Murinae	ANCESTRAL SPECIES	1	ENSGT00950000182893.a.a.b	ENSGT00940000158901	ENSGT00940000155006	ENSGT00940000160486 #8	ENSGT00940000156142 #10	ENSGT00940000158405 #11	ENSGT00940000154090.b #12	ENSGT00720000108866 #13	ENSGT00490000043380 #14	ENSGT00940000162174 #15	ENSGT00390000018723 #16	ENSGT00700000104550.a #17	ENSGT01100000263545.a.a.b #19	ENSGT01100000263545.a.a.a #20	ENSGT00940000161174 #21	ENSGT01050000244866.B #22	ENSGT00950000183094.b.a #23	ENSGT00390000009748 #24	ENSGT00940000159381 #25	ENSGT00390000006931 #26	ENSGT00940000166501 #27	ENSGT00390000014105 #28	ENSGT00940000158250 #29	ENSGT00390000003422 #30	ENSGT00950000183154.b.b #31	ENSGT00390000002635 #32	ENSGT00940000160596 #33	ENSGT00950000183202.a.a #34	ENSGT00390000013867 #35	ENSGT00940000161648 #36	ENSGT00950000182982.B #37
Mus	ANCESTRAL SPECIES	1	ENSGT00900000143312 #7	ENSGT00940000160486 #8	ENSGT00900000143361 #9	ENSGT00940000156142 #10	ENSGT00940000158405 #11	ENSGT00940000154090.b #12	ENSGT00720000108866 #13	ENSGT00490000043380 #14	ENSGT00940000162174 #15	ENSGT00390000018723 #16	ENSGT00700000104550.a #17	ENSGT00610000087508 #18	ENSGT01100000263545.a.a.b #19	ENSGT01100000263545.a.a.a #20	ENSGT00940000161174 #21	ENSGT01050000244866.B #22	ENSGT00950000183094.b.a #23	ENSGT00390000009748 #24	ENSGT00940000159381 #25	ENSGT00390000006931 #26	ENSGT00940000166501 #27	ENSGT00390000014105 #28	ENSGT00940000158250 #29	ENSGT00390000003422 #30	ENSGT00950000183154.b.b #31	ENSGT00390000002635 #32	ENSGT00940000160596 #33	ENSGT00950000183202.a.a #34	ENSGT00390000013867 #35	ENSGT00940000161648 #36	ENSGT00950000182982.B #37
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0026042 #7	Mafb (MGP_PahariEiJ_G0026041) #8	MGP_PahariEiJ_G0026040 #9	Dhx35 (MGP_PahariEiJ_G0026039) #10	Fam83d (MGP_PahariEiJ_G0026038) #11	Ppp1r16b (MGP_PahariEiJ_G0026037) #12	Actr5 (MGP_PahariEiJ_G0026036) #13	Slc32a1 (MGP_PahariEiJ_G0026035) #14	Arhgap40 (MGP_PahariEiJ_G0026034) #15	Adig (MGP_PahariEiJ_G0026033) #16	Ralgapb (MGP_PahariEiJ_G0026032) #17	Snhg11 (MGP_PahariEiJ_G0026031) #18	Lbp (MGP_PahariEiJ_G0026030) #19	MGP_PahariEiJ_G0026029 #20	D630003M21Rik (MGP_PahariEiJ_G0026028) #21	Tgm2 (MGP_PahariEiJ_G0026027) #22	Rprd1b (MGP_PahariEiJ_G0026026) #23	Tti1 (MGP_PahariEiJ_G0026025) #24	Vstm2l (MGP_PahariEiJ_G0026024) #25	Ctnnbl1 (MGP_PahariEiJ_G0026023) #26	Nnat (MGP_PahariEiJ_G0026022) #27	Blcap (MGP_PahariEiJ_G0026021) #28	Src (MGP_PahariEiJ_G0026020) #29	Manbal (MGP_PahariEiJ_G0026019) #30	Ghrh (MGP_PahariEiJ_G0026018) #31	MGP_PahariEiJ_G0026017 #32	Mroh8 (MGP_PahariEiJ_G0026016) #33	Rbl1 (MGP_PahariEiJ_G0026015) #34	Samhd1 (MGP_PahariEiJ_G0026014) #35	Tldc2 (MGP_PahariEiJ_G0026013) #36	Soga1 (MGP_PahariEiJ_G0026012) #37
Mus_A	ANCESTRAL SPECIES		ENSGT00900000143312 #7	ENSGT00940000160486 #8	ENSGT00900000143361 #9	ENSGT00940000156142 #10	ENSGT00940000158405 #11	ENSGT00940000154090.b #12	ENSGT00720000108866 #13	ENSGT00490000043380 #14	ENSGT00940000162174 #15	ENSGT00390000018723 #16	ENSGT00700000104550.a #17	ENSGT00610000087508 #18	ENSGT01100000263545.a.a.b #19	ENSGT01100000263545.a.a.a #20	ENSGT00940000161174 #21	ENSGT01050000244866.B #22	ENSGT00950000183094.b.a #23	ENSGT00390000009748 #24	ENSGT00940000159381 #25	ENSGT00390000006931 #26	ENSGT00940000166501 #27	ENSGT00390000014105 #28	ENSGT00940000158250 #29	ENSGT00390000003422 #30	ENSGT00950000183154.b.b #31	ENSGT00390000002635 #32	ENSGT00940000160596 #33	ENSGT00950000183202.a.a #34	ENSGT00390000013867 #35	ENSGT00940000161648 #36	ENSGT00950000182982.B #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00900000143312 #7	ENSGT00940000160486 #8	ENSGT00900000143361 #9	ENSGT00940000156142 #10	ENSGT00940000158405 #11	ENSGT00940000154090.b #12	ENSGT00720000108866 #13	ENSGT00490000043380 #14	ENSGT00940000162174 #15	ENSGT00390000018723 #16	ENSGT00700000104550.a #17	ENSGT00610000087508 #18	ENSGT01100000263545.a.a.b #19	ENSGT01100000263545.a.a.a #20	ENSGT00940000161174 #21	ENSGT01050000244866.B #22	ENSGT00950000183094.b.a #23	ENSGT00390000009748 #24	ENSGT00940000159381 #25	ENSGT00390000006931 #26	ENSGT00940000166501 #27	ENSGT00390000014105 #28	ENSGT00940000158250 #29	ENSGT00390000003422 #30	ENSGT00950000183154.b.b #31	ENSGT00390000002635 #32	ENSGT00940000160596 #33	ENSGT00950000183202.a.a #34	ENSGT00390000013867 #35	ENSGT00940000161648 #36	ENSGT00950000182982.B #37
Mus_C	ANCESTRAL SPECIES		ENSGT00900000143312 #7	ENSGT00940000160486 #8	ENSGT00900000143361 #9	ENSGT00940000156142 #10	ENSGT00940000158405 #11	ENSGT00940000154090.b #12	ENSGT00720000108866 #13	ENSGT00490000043380 #14	ENSGT00940000162174 #15	ENSGT00390000018723 #16	ENSGT00700000104550.a #17	ENSGT00610000087508 #18	ENSGT01100000263545.a.a.b #19	ENSGT01100000263545.a.a.a #20	ENSGT00940000161174 #21	ENSGT01050000244866.B #22	ENSGT00950000183094.b.a #23	ENSGT00390000009748 #24	ENSGT00940000159381 #25	ENSGT00390000006931 #26	ENSGT00940000166501 #27	ENSGT00390000014105 #28	ENSGT00940000158250 #29	ENSGT00390000003422 #30	ENSGT00950000183154.b.b #31	ENSGT00390000002635 #32	ENSGT00940000160596 #33	ENSGT00950000183202.a.a #34	ENSGT00390000013867 #35	ENSGT00940000161648 #36	ENSGT00950000182982.B #37
Steppe mouse	MODERN SPECIES	3259	Mafb (ENSMSIG00000015312) #8	Gm826 (ENSMSIG00000015321)	Dhx35 (ENSMSIG00000015386) #10	Fam83d (ENSMSIG00000015515) #11	Ppp1r16b (ENSMSIG00000015531) #12	Actr5 (ENSMSIG00000015565) #13	Slc32a1 (ENSMSIG00000015584) #14	Arhgap40 (ENSMSIG00000015598) #15	Adig (ENSMSIG00000015625) #16	Ralgapb (ENSMSIG00000015641) #17	ENSMSIG00000015854	ENSMSIG00000015860 #18	Lbp (ENSMSIG00000015964) #19	Bpi (ENSMSIG00000015995) #20	D630003M21Rik (ENSMSIG00000016049) #21	Tgm2 (ENSMSIG00000016148) #22
spretus	MODERN SPECIES	11	MGP_SPRETEiJ_G0025520 #7	Mafb (MGP_SPRETEiJ_G0025519) #8	MGP_SPRETEiJ_G0025518 #9	Dhx35 (MGP_SPRETEiJ_G0025517) #10	Fam83d (MGP_SPRETEiJ_G0025516) #11	Ppp1r16b (MGP_SPRETEiJ_G0025515) #12	Actr5 (MGP_SPRETEiJ_G0025514) #13	Slc32a1 (MGP_SPRETEiJ_G0025513) #14	Arhgap40 (MGP_SPRETEiJ_G0025512) #15	Adig (MGP_SPRETEiJ_G0025511) #16	Ralgapb (MGP_SPRETEiJ_G0025510) #17	Snhg11 (MGP_SPRETEiJ_G0025509) #18	MGP_SPRETEiJ_G0025508 #19	Bpi (MGP_SPRETEiJ_G0025507) #20	D630003M21Rik (MGP_SPRETEiJ_G0025506) #21	Tgm2 (MGP_SPRETEiJ_G0025505) #22	Rprd1b (MGP_SPRETEiJ_G0025504) #23	Tti1 (MGP_SPRETEiJ_G0025503) #24	Vstm2l (MGP_SPRETEiJ_G0025502) #25	Ctnnbl1 (MGP_SPRETEiJ_G0025501) #26	Nnat (MGP_SPRETEiJ_G0025500) #27	Blcap (MGP_SPRETEiJ_G0025499) #28	Src (MGP_SPRETEiJ_G0025498) #29	Manbal (MGP_SPRETEiJ_G0025497) #30	Ghrh (MGP_SPRETEiJ_G0025496) #31	Rpn2 (MGP_SPRETEiJ_G0025495) #32	Mroh8 (MGP_SPRETEiJ_G0025494) #33	Rbl1 (MGP_SPRETEiJ_G0025493) #34	Samhd1 (MGP_SPRETEiJ_G0025492) #35	Tldc2 (MGP_SPRETEiJ_G0025491) #36	Soga1 (MGP_SPRETEiJ_G0025490) #37
Mouse	MODERN SPECIES	11	Top1 (ENSMUSG00000070544)	Mafb (ENSMUSG00000074622) #8	Gm826 (ENSMUSG00000074623)	Dhx35 (ENSMUSG00000027655) #10	Fam83d (ENSMUSG00000027654) #11	Ppp1r16b (ENSMUSG00000037754) #12	Actr5 (ENSMUSG00000037761) #13	Slc32a1 (ENSMUSG00000037771) #14	Arhgap40 (ENSMUSG00000074625) #15	Adig (ENSMUSG00000044405) #16	Ralgapb (ENSMUSG00000027652) #17	Snhg11 (ENSMUSG00000044349) #18	Lbp (ENSMUSG00000016024) #19	Bpi (ENSMUSG00000052922) #20	D630003M21Rik (ENSMUSG00000037813) #21	Tgm2 (ENSMUSG00000037820) #22	Rprd1b (ENSMUSG00000027651) #23	Tti1 (ENSMUSG00000027650) #24	Vstm2l (ENSMUSG00000037843) #25	Ctnnbl1 (ENSMUSG00000027649) #26	Nnat (ENSMUSG00000067786) #27	Blcap (ENSMUSG00000067787) #28	Src (ENSMUSG00000027646) #29	Manbal (ENSMUSG00000063019) #30	Ghrh (ENSMUSG00000027643) #31	Rpn2 (ENSMUSG00000027642) #32	Mroh8 (ENSMUSG00000074627) #33	Rbl1 (ENSMUSG00000027641) #34	Samhd1 (ENSMUSG00000027639) #35	Tldc2 (ENSMUSG00000074628) #36	Soga1 (ENSMUSG00000055485) #37
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024598 #7	Mafb (MGP_CAROLIEiJ_G0024597) #8	MGP_CAROLIEiJ_G0024596 #9	Dhx35 (MGP_CAROLIEiJ_G0024595) #10	Fam83d (MGP_CAROLIEiJ_G0024594) #11	Ppp1r16b (MGP_CAROLIEiJ_G0024593) #12	Actr5 (MGP_CAROLIEiJ_G0024592) #13	Slc32a1 (MGP_CAROLIEiJ_G0024591) #14	Arhgap40 (MGP_CAROLIEiJ_G0024590) #15	Adig (MGP_CAROLIEiJ_G0024589) #16	Ralgapb (MGP_CAROLIEiJ_G0024588) #17	Snhg11 (MGP_CAROLIEiJ_G0024587) #18	Lbp (MGP_CAROLIEiJ_G0024586) #19	Bpi (MGP_CAROLIEiJ_G0024585) #20	D630003M21Rik (MGP_CAROLIEiJ_G0024584) #21	Tgm2 (MGP_CAROLIEiJ_G0024583) #22	Rprd1b (MGP_CAROLIEiJ_G0024582) #23	Tti1 (MGP_CAROLIEiJ_G0024581) #24	Vstm2l (MGP_CAROLIEiJ_G0024580) #25	Ctnnbl1 (MGP_CAROLIEiJ_G0024579) #26	Nnat (MGP_CAROLIEiJ_G0024578) #27	Blcap (MGP_CAROLIEiJ_G0024577) #28	Src (MGP_CAROLIEiJ_G0024576) #29	Manbal (MGP_CAROLIEiJ_G0024575) #30	Ghrh (MGP_CAROLIEiJ_G0024574) #31	Rpn2 (MGP_CAROLIEiJ_G0024573) #32	Mroh8 (MGP_CAROLIEiJ_G0024572) #33	Rbl1 (MGP_CAROLIEiJ_G0024571) #34	Samhd1 (MGP_CAROLIEiJ_G0024570) #35	Tldc2 (MGP_CAROLIEiJ_G0024569) #36	Soga1 (MGP_CAROLIEiJ_G0024568) #37
Rat	MODERN SPECIES	13	Top1 (ENSRNOG00000047611)	ENSRNOG00000066616	Mafb (ENSRNOG00000016037) #8	Dhx35 (ENSRNOG00000015928) #10	Fam83d (ENSRNOG00000015794) #11	LOC120101775 (ENSRNOG00000029227)	Ppp1r16b (ENSRNOG00000015614) #12	Actr5 (ENSRNOG00000023989) #13	Slc32a1 (ENSRNOG00000015393) #14	Arhgap40 (ENSRNOG00000015359) #15	Ralgapb (ENSRNOG00000014836) #17	ENSRNOG00000065727	Lbp (ENSRNOG00000014532) #19	Bpi (ENSRNOG00000034195) #20	Kiaa1755 (ENSRNOG00000014424) #21	Tgm2 (ENSRNOG00000012956) #22	Rprd1b (ENSRNOG00000012923) #23	Tti1 (ENSRNOG00000012880) #24	Vstm2l (ENSRNOG00000034031) #25	Mpc1l-ps3 (ENSRNOG00000049208)	Ctnnbl1 (ENSRNOG00000012021) #26	Nnat (ENSRNOG00000024923) #27	Blcap (ENSRNOG00000024437) #28	Src (ENSRNOG00000009495) #29	Manbal (ENSRNOG00000031453) #30	Ghrh (ENSRNOG00000007782) #31	Rpn2 (ENSRNOG00000007492) #32	Mroh8 (ENSRNOG00000007341) #33	Rbl1 (ENSRNOG00000006921) #34	Samhd1 (ENSRNOG00000006418) #35	Tldc2 (ENSRNOG00000006395) #36