Fungi/Metazoa group	ANCESTRAL SPECIES	10															ENSGT00390000011390	ENSGT01050000244824.F #22
Bilateria	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Gnathostomata	ANCESTRAL SPECIES	40														ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00710000106806	ENSGT00390000006837	ENSGT00390000005903	ENSGT00940000157945	ENSGT00940000158317	ENSGT00940000158123	ENSGT00940000157638
Euteleostomi	ANCESTRAL SPECIES	52	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a	ENSGT00390000018439
Sarcopterygii	ANCESTRAL SPECIES	103	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.B	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Amniota	ANCESTRAL SPECIES	22	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Mammalia	ANCESTRAL SPECIES	18	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00940000177870	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00940000160568.n
Theria	ANCESTRAL SPECIES	28	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Eutheria	ANCESTRAL SPECIES	14			ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Primates	ANCESTRAL SPECIES	1		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Haplorrhini	ANCESTRAL SPECIES	53		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00940000157312	ENSGT00390000008330
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00940000157312	ENSGT00390000008330
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37	ENSGT00940000157312
Rhinopithecus	ANCESTRAL SPECIES	35													ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170.n #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37	ENSGT00940000157312
Black snub-nosed monkey	MODERN SPECIES	772											PRR23E (ENSRBIG00000031852) #17	ENSRBIG00000013923 #18	PRR20G (ENSRBIG00000035864) #19	ENSRBIG00000029763 #20	TPRA1 (ENSRBIG00000021517) #21	MCM2 (ENSRBIG00000034363) #22	PODXL2 (ENSRBIG00000035462) #23	ABTB1 (ENSRBIG00000034937) #24	MGLL (ENSRBIG00000041834) #25	KBTBD12 (ENSRBIG00000030050) #26	ENSRBIG00000031893 #27	ENSRBIG00000008581 #28	RUVBL1 (ENSRBIG00000033313) #29	EEFSEC (ENSRBIG00000032635) #30	DNAJB8 (ENSRBIG00000005878) #31	GATA2 (ENSRBIG00000038834) #32	ENSRBIG00000042871 #33	RPN1 (ENSRBIG00000044116) #34	RAB7A (ENSRBIG00000034869) #35	ENSRBIG00000025725 #36	ENSRBIG00000043768 #37
Golden snub-nosed monkey	MODERN SPECIES	3112															TPRA1 (ENSRROG00000036317) #21	MCM2 (ENSRROG00000042335) #22	PODXL2 (ENSRROG00000039279) #23	ABTB1 (ENSRROG00000037425) #24	MGLL (ENSRROG00000042663) #25	KBTBD12 (ENSRROG00000042733) #26	ENSRROG00000044217 #27	RUVBL1 (ENSRROG00000037342) #29	ENSRROG00000030260 #30
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37	ENSGT00940000157312
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00910000147060	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37
Macaca	ANCESTRAL SPECIES	5	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00910000147060	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37
Pig-tailed macaque	MODERN SPECIES	546													PRR23E (ENSMNEG00000040938) #17	ENSMNEG00000032232 #20	TPRA1 (ENSMNEG00000030541) #21	MCM2 (ENSMNEG00000034425) #22	PODXL2 (ENSMNEG00000035933) #23	ABTB1 (ENSMNEG00000045566) #24	MGLL (ENSMNEG00000038846) #25	KBTBD12 (ENSMNEG00000031241) #26	SEC61A1 (ENSMNEG00000001390) #27	RUVBL1 (ENSMNEG00000030256) #29	ENSMNEG00000023174	EEFSEC (ENSMNEG00000028574) #30	DNAJB8 (ENSMNEG00000011913) #31	GATA2 (ENSMNEG00000029290) #32	ENSMNEG00000030117 #33	RPN1 (ENSMNEG00000023826) #34	ENSMNEG00000040171	ENSMNEG00000014307 #36	RAB7A (ENSMNEG00000033473) #35
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00940000157312	ENSGT00390000008330	ENSGT00950000183014.f.b.a.b	ENSGT00940000161627.a.b.b.a.b.b.b
Rhesus	MODERN SPECIES	11	ENSMMUG00000056933	SLC41A3 (ENSMMUG00000012847)	ALDH1L1 (ENSMMUG00000012488)	KLF15 (ENSMMUG00000003721)	CFAP100 (ENSMMUG00000004192)	ZXDC (ENSMMUG00000004195)	UROC1 (ENSMMUG00000004197)	CHST13 (ENSMMUG00000004201)	C2H3orf22 (ENSMMUG00000004203)	TXNRD3 (ENSMMUG00000001714)	CHCHD6 (ENSMMUG00000016719)	PLXNA1 (ENSMMUG00000016720)	PRR20G (ENSMMUG00000050488) #19	ENSMMUG00000055664	TPRA1 (ENSMMUG00000000756) #21	MCM2 (ENSMMUG00000000158) #22	PODXL2 (ENSMMUG00000000164) #23	ABTB1 (ENSMMUG00000000166) #24	ENSMMUG00000056821	MGLL (ENSMMUG00000000168) #25	KBTBD12 (ENSMMUG00000046638) #26	SEC61A1 (ENSMMUG00000018661) #27	RUVBL1 (ENSMMUG00000018662) #29	EEFSEC (ENSMMUG00000018663) #30	GATA2 (ENSMMUG00000021371) #32	RPN1 (ENSMMUG00000018321) #34	ENSMMUG00000020716	RAB7A (ENSMMUG00000001798) #35	ACAD9 (ENSMMUG00000006338)	CFAP92 (ENSMMUG00000006343)	EFCC1 (ENSMMUG00000047061)
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000040261	SLC41A3 (ENSMFAG00000003568)	ALDH1L1 (ENSMFAG00000039810)	KLF15 (ENSMFAG00000002550)	CFAP100 (ENSMFAG00000042548)	ZXDC (ENSMFAG00000035930)	UROC1 (ENSMFAG00000042232)	C3orf22 (ENSMFAG00000032848)	ENSMFAG00000003422	TXNRD3 (ENSMFAG00000001280)	CHCHD6 (ENSMFAG00000006791)	PLXNA1 (ENSMFAG00000037368)	PRR20G (ENSMFAG00000056785) #19	ENSMFAG00000041353 #20	TPRA1 (ENSMFAG00000038337) #21	MCM2 (ENSMFAG00000021368) #22	PODXL2 (ENSMFAG00000003876) #23	ABTB1 (ENSMFAG00000033156) #24	MGLL (ENSMFAG00000033079) #25	KBTBD12 (ENSMFAG00000007505) #26	SEC61A1 (ENSMFAG00000043634) #27	RUVBL1 (ENSMFAG00000003301) #29	EEFSEC (ENSMFAG00000042128) #30	DNAJB8 (ENSMFAG00000030291) #31	GATA2 (ENSMFAG00000038603) #32	RPN1 (ENSMFAG00000003642) #34	ENSMFAG00000031120	ENSMFAG00000054493	RAB7A (ENSMFAG00000050771) #35	ENSMFAG00000057913	ACAD9 (ENSMFAG00000045035)
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00390000007772.b.b #17	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00910000147060	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37
Olive baboon	MODERN SPECIES	11	OSBPL11 (ENSPANG00000018912)	ENSPANG00000043961	SLC41A3 (ENSPANG00000021689)	ALDH1L1 (ENSPANG00000021688)	KLF15 (ENSPANG00000026096)	CFAP100 (ENSPANG00000000432)	ZXDC (ENSPANG00000000433)	UROC1 (ENSPANG00000023053)	CHST13 (ENSPANG00000023284)	C3orf22 (ENSPANG00000025524)	ENSPANG00000008761	TXNRD3 (ENSPANG00000000735)	PLXNA1 (ENSPANG00000009644)	PRR20G (ENSPANG00000050712) #19	TPRA1 (ENSPANG00000000387) #21	MCM2 (ENSPANG00000000386) #22	PODXL2 (ENSPANG00000004125) #23	ABTB1 (ENSPANG00000020391) #24	MGLL (ENSPANG00000018817) #25	KBTBD12 (ENSPANG00000006163) #26	SEC61A1 (ENSPANG00000012256) #27	RUVBL1 (ENSPANG00000004174) #29	ENSPANG00000048574	EEFSEC (ENSPANG00000017041) #30	DNAJB8 (ENSPANG00000001041) #31	GATA2 (ENSPANG00000005346) #32	ENSPANG00000024411 #33	RPN1 (ENSPANG00000007909) #34	ENSPANG00000041869	RAB7A (ENSPANG00000031173) #35	ENSPANG00000033246 #36
Cercopithecinae_d	ANCESTRAL SPECIES	12													ENSGT00390000007772.b.b #17	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00910000147060	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00910000147229 #37
Sooty mangabey	MODERN SPECIES	650													PRR23E (ENSCATG00000015144) #17	ENSCATG00000029668 #20	TPRA1 (ENSCATG00000030415) #21	MCM2 (ENSCATG00000029562) #22	PODXL2 (ENSCATG00000038361) #23	ABTB1 (ENSCATG00000029268) #24	MGLL (ENSCATG00000034929) #25	KBTBD12 (ENSCATG00000033209) #26	SEC61A1 (ENSCATG00000030097) #27	RUVBL1 (ENSCATG00000030520) #29	ENSCATG00000005753	EEFSEC (ENSCATG00000019414) #30	DNAJB8 (ENSCATG00000000460) #31	GATA2 (ENSCATG00000017111) #32	ENSCATG00000000229 #33	RPN1 (ENSCATG00000037161) #34	ENSCATG00000001293 #36	ENSCATG00000041773	ENSCATG00000037989 #37
Drill	MODERN SPECIES	264	MITF (ENSMLEG00000039415)	ENSMLEG00000034644	MDFIC2 (ENSMLEG00000007420)	FOXP1 (ENSMLEG00000037250)	ENSMLEG00000038551	ENSMLEG00000010756	PROK2 (ENSMLEG00000030120)	ENSMLEG00000037986	RYBP (ENSMLEG00000038150)	SHQ1 (ENSMLEG00000038493)	GXYLT2 (ENSMLEG00000000099)	PPP4R2 (ENSMLEG00000040160)	PRR23E (ENSMLEG00000030492) #17	ENSMLEG00000026183 #20	TPRA1 (ENSMLEG00000034167) #21	MCM2 (ENSMLEG00000038079) #22	PODXL2 (ENSMLEG00000021945) #23	ABTB1 (ENSMLEG00000043506) #24	MGLL (ENSMLEG00000038697) #25	KBTBD12 (ENSMLEG00000032213) #26	SEC61A1 (ENSMLEG00000032430) #27	RUVBL1 (ENSMLEG00000038540) #29	ENSMLEG00000044016	EEFSEC (ENSMLEG00000041771) #30	DNAJB8 (ENSMLEG00000014589) #31	GATA2 (ENSMLEG00000041394) #32	ENSMLEG00000027936 #33	RPN1 (ENSMLEG00000030689) #34
Vervet Monkey	MODERN SPECIES	14	ENSCSAG00000008002	SLC41A3 (ENSCSAG00000008006)	ALDH1L1 (ENSCSAG00000008021)	ENSCSAG00000008030	KLF15 (ENSCSAG00000008037)	CFAP100 (ENSCSAG00000008048)	ZXDC (ENSCSAG00000008075)	UROC1 (ENSCSAG00000008092)	CHST13 (ENSCSAG00000008104)	C3orf22 (ENSCSAG00000008113)	TXNRD3 (ENSCSAG00000008126)	CHCHD6 (ENSCSAG00000008135)	PLXNA1 (ENSCSAG00000008326)	PRR20G (ENSCSAG00000008436) #19	TPRA1 (ENSCSAG00000008452) #21	MCM2 (ENSCSAG00000008462) #22	PODXL2 (ENSCSAG00000008474) #23	ABTB1 (ENSCSAG00000008534) #24	MGLL (ENSCSAG00000008560) #25	KBTBD12 (ENSCSAG00000008568) #26	ENSCSAG00000018715	SEC61A1 (ENSCSAG00000008579) #27	RUVBL1 (ENSCSAG00000008592) #29	EEFSEC (ENSCSAG00000008599) #30	DNAJB8 (ENSCSAG00000018813) #31	GATA2 (ENSCSAG00000008607) #32	RPN1 (ENSCSAG00000008622) #34	RAB7A (ENSCSAG00000008628) #35	ACAD9 (ENSCSAG00000008707)	CFAP92 (ENSCSAG00000008754)	EFCC1 (ENSCSAG00000008762)
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00910000148072	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00910000147060	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00940000157312
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00910000148072	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00910000147060	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00940000157312
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00910000148072	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00910000147965	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00910000147060	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00910000148072	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00910000147965	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00910000147060	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00520000059425
Pan	ANCESTRAL SPECIES	2	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00910000148072	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00530000068689	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00910000147965	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.c #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00910000147060	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000003087 #33	ENSGT00390000009630 #34	ENSGT00520000059425	ENSGT00390000007704 #36
Chimpanzee	MODERN SPECIES	16	KLF15 (ENSPTRG00000015329)	CFAP100 (ENSPTRG00000015330)	ZXDC (ENSPTRG00000015332)	ENSPTRG00000052072	UROC1 (ENSPTRG00000015334)	CHST13 (ENSPTRG00000015335)	C3H3orf22 (ENSPTRG00000015337)	ENSPTRG00000042250	TXNRD3 (ENSPTRG00000015338)	CHCHD6 (ENSPTRG00000015340)	PLXNA1 (ENSPTRG00000015341)	PRR23E (ENSPTRG00000048073) #17	PRR20G (ENSPTRG00000045213) #19	ENSPTRG00000044306 #20	TPRA1 (ENSPTRG00000015344) #21	MCM2 (ENSPTRG00000015345) #22	PODXL2 (ENSPTRG00000015346) #23	ABTB1 (ENSPTRG00000015347) #24	MGLL (ENSPTRG00000015348) #25	ENSPTRG00000049260	KBTBD12 (ENSPTRG00000015350) #26	SEC61A1 (ENSPTRG00000015351) #27	RUVBL1 (ENSPTRG00000015352) #29	EEFSEC (ENSPTRG00000015353) #30	ENSPTRG00000047855	DNAJB8 (ENSPTRG00000030133) #31	GATA2 (ENSPTRG00000015355) #32	ENSPTRG00000015356 #33	RPN1 (ENSPTRG00000015358) #34	ENSPTRG00000052721	RAB7A (ENSPTRG00000015359)
Bonobo	MODERN SPECIES	16	ENSPPAG00000040701	ENSPPAG00000039621	UROC1 (ENSPPAG00000042107)	CHST13 (ENSPPAG00000037247)	C3orf22 (ENSPPAG00000041480)	ENSPPAG00000027916	TXNRD3 (ENSPPAG00000039160)	ENSPPAG00000039882	ENSPPAG00000042983	PLXNA1 (ENSPPAG00000043571)	PRR23E (ENSPPAG00000025709) #17	PRR20G (ENSPPAG00000037173) #19	ENSPPAG00000037957 #20	ENSPPAG00000002927	TPRA1 (ENSPPAG00000027470) #21	MCM2 (ENSPPAG00000007554) #22	PODXL2 (ENSPPAG00000026149) #23	ABTB1 (ENSPPAG00000029212) #24	MGLL (ENSPPAG00000042233) #25	ENSPPAG00000039348	KBTBD12 (ENSPPAG00000042786) #26	SEC61A1 (ENSPPAG00000019985) #27	RUVBL1 (ENSPPAG00000040102) #29	EEFSEC (ENSPPAG00000030936) #30	ENSPPAG00000032736	DNAJB8 (ENSPPAG00000007556) #31	GATA2 (ENSPPAG00000027745) #32	ENSPPAG00000017566 #33	RPN1 (ENSPPAG00000026160) #34	ENSPPAG00000036440	ENSPPAG00000030098
Human	MODERN SPECIES	15	ROPN1B (ENSG00000114547)	SLC41A3 (ENSG00000114544)	ALDH1L1 (ENSG00000144908)	KLF15 (ENSG00000163884)	CFAP100 (ENSG00000163885)	ZXDC (ENSG00000070476)	UROC1 (ENSG00000159650)	CHST13 (ENSG00000180767)	C3orf22 (ENSG00000180697)	TXNRD3 (ENSG00000197763)	CHCHD6 (ENSG00000159685)	PLXNA1 (ENSG00000114554)	PRR23E (ENSG00000214324) #17	PRR20G (ENSG00000239620) #19	TPRA1 (ENSG00000163870) #21	MCM2 (ENSG00000073111) #22	PODXL2 (ENSG00000114631) #23	ABTB1 (ENSG00000114626) #24	MGLL (ENSG00000074416) #25	KBTBD12 (ENSG00000187715) #26	SEC61A1 (ENSG00000058262) #27	RUVBL1 (ENSG00000175792) #29	EEFSEC (ENSG00000132394) #30	DNAJB8 (ENSG00000179407) #31	GATA2 (ENSG00000179348) #32	RPN1 (ENSG00000163902) #34	RAB7A (ENSG00000075785) #35	ACAD9 (ENSG00000177646)	CFAP92 (ENSG00000114656)	EFCC1 (ENSG00000114654)	GP9 (ENSG00000169704)
Gorilla	MODERN SPECIES	16	ALDH1L1 (ENSGGOG00000004772)	KLF15 (ENSGGOG00000009916)	CFAP100 (ENSGGOG00000009922)	ZXDC (ENSGGOG00000009938)	UROC1 (ENSGGOG00000013993)	CHST13 (ENSGGOG00000014010)	C3orf22 (ENSGGOG00000014017)	ENSGGOG00000025139	TXNRD3 (ENSGGOG00000005318)	CHCHD6 (ENSGGOG00000009066)	PLXNA1 (ENSGGOG00000000847)	PRR23E (ENSGGOG00000040736) #17	PRR20G (ENSGGOG00000025848) #19	ENSGGOG00000037140 #20	TPRA1 (ENSGGOG00000010008) #21	MCM2 (ENSGGOG00000014866) #22	PODXL2 (ENSGGOG00000000176) #23	ABTB1 (ENSGGOG00000000177) #24	MGLL (ENSGGOG00000000179) #25	ENSGGOG00000044048	KBTBD12 (ENSGGOG00000025759) #26	SEC61A1 (ENSGGOG00000010507) #27	RUVBL1 (ENSGGOG00000010520) #29	EEFSEC (ENSGGOG00000001445) #30	ENSGGOG00000038952	DNAJB8 (ENSGGOG00000038485) #31	GATA2 (ENSGGOG00000006156) #32	ENSGGOG00000005125 #33	RPN1 (ENSGGOG00000013966) #34	RAB7A (ENSGGOG00000005557) #35	ENSGGOG00000026638 #36
Orangutan	MODERN SPECIES	16	ROPN1B (ENSPPYG00000013469)	SLC41A3 (ENSPPYG00000013457)	ALDH1L1 (ENSPPYG00000013456)	KLF15 (ENSPPYG00000013455)	CFAP100 (ENSPPYG00000013454)	ZXDC (ENSPPYG00000013453)	UROC1 (ENSPPYG00000013452)	CHST13 (ENSPPYG00000013451)	C3orf22 (ENSPPYG00000013450)	TXNRD3 (ENSPPYG00000013449)	CHCHD6 (ENSPPYG00000013447)	PLXNA1 (ENSPPYG00000013446)	PRR23E (ENSPPYG00000013445) #17	PRR20G (ENSPPYG00000031249) #19	ENSPPYG00000013444 #21	MCM2 (ENSPPYG00000013443) #22	PODXL2 (ENSPPYG00000013442) #23	ABTB1 (ENSPPYG00000013441) #24	MGLL (ENSPPYG00000013440) #25	KBTBD12 (ENSPPYG00000037884) #26	SEC61A1 (ENSPPYG00000013438) #27	RUVBL1 (ENSPPYG00000013437) #29	EEFSEC (ENSPPYG00000013436) #30	DNAJB8 (ENSPPYG00000013435) #31	GATA2 (ENSPPYG00000013434) #32	RPN1 (ENSPPYG00000013432) #34	ENSPPYG00000013430 #36	RAB7A (ENSPPYG00000013431) #35	ENSPPYG00000039972	ACAD9 (ENSPPYG00000013429)	CFAP92 (ENSPPYG00000013428)
Gibbon	MODERN SPECIES	13	SLC41A3 (ENSNLEG00000000891)	ALDH1L1 (ENSNLEG00000000948)	KLF15 (ENSNLEG00000028904)	CFAP100 (ENSNLEG00000001053)	ZXDC (ENSNLEG00000001066)	ENSNLEG00000036223	UROC1 (ENSNLEG00000001076)	ENSNLEG00000001080	C3orf22 (ENSNLEG00000001083)	ENSNLEG00000001088	TXNRD3 (ENSNLEG00000001090)	ENSNLEG00000029654	PLXNA1 (ENSNLEG00000001109)	PRR23E (ENSNLEG00000018671) #17	TPRA1 (ENSNLEG00000014115) #21	ENSNLEG00000014125 #22	PODXL2 (ENSNLEG00000014142) #23	ABTB1 (ENSNLEG00000033739) #24	MGLL (ENSNLEG00000014200) #25	KBTBD12 (ENSNLEG00000014254) #26	SEC61A1 (ENSNLEG00000014258) #27	RUVBL1 (ENSNLEG00000014205) #29	EEFSEC (ENSNLEG00000014303) #30	ENSNLEG00000030486	DNAJB8 (ENSNLEG00000019296) #31	GATA2 (ENSNLEG00000014320) #32	ENSNLEG00000014335	ENSNLEG00000014336 #33	ENSNLEG00000031100	RPN1 (ENSNLEG00000014337) #34	RAB7A (ENSNLEG00000029309) #35
Platyrrhini	ANCESTRAL SPECIES	37	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000153786.e.a.a	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22
Cebidae	ANCESTRAL SPECIES	35	ENSGT00940000160913	ENSGT00940000153786.e.a.a	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT01030000237923	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000007772.b.b #17	ENSGT00390000001542.a #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22
Marmoset	MODERN SPECIES	6	ALDH1L1 (ENSCJAG00000006865)	KLF15 (ENSCJAG00000006941)	CFAP100 (ENSCJAG00000006945)	ZXDC (ENSCJAG00000006974)	UROC1 (ENSCJAG00000034319)	CHST13 (ENSCJAG00000077604)	C3orf22 (ENSCJAG00000011278)	TXNRD3 (ENSCJAG00000011289)	ENSCJAG00000064210	CHCHD6 (ENSCJAG00000011355)	PLXNA1 (ENSCJAG00000011377)	ENSCJAG00000072844	ENSCJAG00000022924 #17	PRR20G (ENSCJAG00000041034) #19	TPRA1 (ENSCJAG00000008960) #21	MCM2 (ENSCJAG00000008943) #22	TASOR (ENSCJAG00000010847)	CCDC66 (ENSCJAG00000010819)	ARHGEF3 (ENSCJAG00000010916)	IL17RD (ENSCJAG00000010960)	HESX1 (ENSCJAG00000048644)	APPL1 (ENSCJAG00000010992)	ENSCJAG00000064733	PODXL2 (ENSCJAG00000005226) #23	MGLL (ENSCJAG00000005274) #25	ENSCJAG00000076823	KBTBD12 (ENSCJAG00000005305) #26	SEC61A1 (ENSCJAG00000005358) #27	RUVBL1 (ENSCJAG00000005310) #29	EEFSEC (ENSCJAG00000005387) #30	DNAJB8 (ENSCJAG00000046212) #31
Cebidae_a	ANCESTRAL SPECIES	125	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000153786.e.a.a	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT01030000237923	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542.a #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22
Capuchin	MODERN SPECIES	376	ZDHHC9 (ENSCCAG00000021201)	ENSCCAG00000019807	UTP14A (ENSCCAG00000035074)	BCORL1 (ENSCCAG00000018301)	ELF4 (ENSCCAG00000024590)	AIFM1 (ENSCCAG00000032951)	RAB33A (ENSCCAG00000035680)	ZNF280C (ENSCCAG00000023882)	SLC25A14 (ENSCCAG00000022512)	ENSCCAG00000026471	ENOX2 (ENSCCAG00000029178)	ARHGAP36 (ENSCCAG00000025663)	IGSF1 (ENSCCAG00000027315)	PRR20G (ENSCCAG00000020972) #19	TPRA1 (ENSCCAG00000029851) #21	MCM2 (ENSCCAG00000015881) #22
Bolivian squirrel monkey	MODERN SPECIES	243	ALDH1L1 (ENSSBOG00000028007)	ENSSBOG00000025614	ENSSBOG00000025109	KLF15 (ENSSBOG00000021553)	CFAP100 (ENSSBOG00000019567)	ZXDC (ENSSBOG00000007246)	UROC1 (ENSSBOG00000032280)	CHST13 (ENSSBOG00000026575)	C3orf22 (ENSSBOG00000020324)	TXNRD3 (ENSSBOG00000018547)	ENSSBOG00000036344	CHCHD6 (ENSSBOG00000021537)	PLXNA1 (ENSSBOG00000011978)	PRR20G (ENSSBOG00000027200) #19	TPRA1 (ENSSBOG00000023805) #21	MCM2 (ENSSBOG00000025944) #22
Mas night monkey	MODERN SPECIES	1130	ALDH1L1 (ENSANAG00000035887)	ENSANAG00000020848	KLF15 (ENSANAG00000029612)	CFAP100 (ENSANAG00000036664)	ZXDC (ENSANAG00000030993)	UROC1 (ENSANAG00000037510)	CHST13 (ENSANAG00000011064)	C3orf22 (ENSANAG00000036080)	TXNRD3 (ENSANAG00000034426)	CHCHD6 (ENSANAG00000018993)	PLXNA1 (ENSANAG00000035335)	PRR23E (ENSANAG00000030576) #17	ENSANAG00000028555 #19	ENSANAG00000019489	TPRA1 (ENSANAG00000035830) #21	MCM2 (ENSANAG00000017116) #22
Tarsier	MODERN SPECIES	4147														ENSTSYG00000036818	TPRA1 (ENSTSYG00000029988) #21	MCM2 (ENSTSYG00000006266) #22	PODXL2 (ENSTSYG00000033888) #23	ABTB1 (ENSTSYG00000006434) #24	MGLL (ENSTSYG00000007017) #25	KBTBD12 (ENSTSYG00000005316) #26
Strepsirrhini	ANCESTRAL SPECIES	1					ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Lemuriformes	ANCESTRAL SPECIES	115													ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23
Mouse lemur	MODERN SPECIES	14	ENSMICG00000032573	CEACAM18 (ENSMICG00000028128)	ENSMICG00000035756	ENSMICG00000041738	ENSMICG00000037445 #29	SEC61A1 (ENSMICG00000038735) #27	ENSMICG00000044805	ENSMICG00000032361	ENSMICG00000042999	ENSMICG00000005257 #31	ENSMICG00000044831	UROC1 (ENSMICG00000042477)	ENSMICG00000047409	ENSMICG00000027993	TPRA1 (ENSMICG00000046251) #21	MCM2 (ENSMICG00000033923) #22	MGLL (ENSMICG00000031034) #25	ABTB1 (ENSMICG00000031555) #24	GATA2 (ENSMICG00000047775) #32	ENSMICG00000044691 #34	ENSMICG00000038752 #35	H1-10 (ENSMICG00000040699)	ENSMICG00000046001 ##35	ENSMICG00000042693	COPG1 (ENSMICG00000047416)	CNBP (ENSMICG00000045988)	ISY1 (ENSMICG00000037547)	GP9 (ENSMICG00000047442)	TRH (ENSMICG00000030353)	ENSMICG00000043734	MRPS25 (ENSMICG00000040033)
Lemuriformes_a	ANCESTRAL SPECIES	288														ENSGT00390000001542 #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23
Coquerels sifaka	MODERN SPECIES	924															ENSPCOG00000019263 #21	MCM2 (ENSPCOG00000017456) #22
Greater bamboo lemur	MODERN SPECIES	397														ENSPSMG00000005138 #19	TPRA1 (ENSPSMG00000005120) #21	MCM2 (ENSPSMG00000005099) #22	PODXL2 (ENSPSMG00000005065) #23
Bushbaby	MODERN SPECIES	216						ENSOGAG00000004411	ALDH1L1 (ENSOGAG00000004413)	KLF15 (ENSOGAG00000000703)	CFAP100 (ENSOGAG00000000704)	ZXDC (ENSOGAG00000028511)	UROC1 (ENSOGAG00000000708)	CHST13 (ENSOGAG00000024767)	TXNRD3 (ENSOGAG00000004878)	PLXNA1 (ENSOGAG00000005328)	TPRA1 (ENSOGAG00000010093) #21	MCM2 (ENSOGAG00000010099) #22	PODXL2 (ENSOGAG00000010107) #23	ABTB1 (ENSOGAG00000008864) #24	MGLL (ENSOGAG00000005556) #25	KBTBD12 (ENSOGAG00000029042) #26	SEC61A1 (ENSOGAG00000014076) #27	RUVBL1 (ENSOGAG00000014081) #29	EEFSEC (ENSOGAG00000014084) #30	DNAJB8 (ENSOGAG00000014090) #31	GATA2 (ENSOGAG00000013538) #32	ENSOGAG00000029608	ENSOGAG00000000915 #34	RAB7A (ENSOGAG00000007885) #35	H1-10 (ENSOGAG00000024640)	HMCES (ENSOGAG00000011392)	COPG1 (ENSOGAG00000011386)
Euarchontoglires_A	ANCESTRAL SPECIES	30			ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Glires	ANCESTRAL SPECIES	2	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Lagomorpha	ANCESTRAL SPECIES	104	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00990000205522	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e	ENSGT00390000014109
Rabbit	MODERN SPECIES	20	IQSEC1 (ENSOCUG00000001343)	ENSOCUG00000037996	ENSOCUG00000030059	SLC41A3 (ENSOCUG00000008996)	ALDH1L1 (ENSOCUG00000015071)	KLF15 (ENSOCUG00000012493)	ENSOCUG00000039308	ENSOCUG00000012500	ZXDC (ENSOCUG00000022942)	UROC1 (ENSOCUG00000012624)	CHST13 (ENSOCUG00000025359)	TXNRD3 (ENSOCUG00000008949)	CHCHD6 (ENSOCUG00000008144)	PLXNA1 (ENSOCUG00000003662)	TPRA1 (ENSOCUG00000027115) #21	MCM2 (ENSOCUG00000015924) #22	PODXL2 (ENSOCUG00000014460) #23	ABTB1 (ENSOCUG00000027274) #24	ENSOCUG00000036497	KBTBD12 (ENSOCUG00000016494) #26	SEC61A1 (ENSOCUG00000016501) #27	RUVBL1 (ENSOCUG00000016510) #29	EEFSEC (ENSOCUG00000016517) #30	DNAJB8 (ENSOCUG00000026352) #31	ENSOCUG00000037243	RPN1 (ENSOCUG00000008171) #34	ENSOCUG00000001645 #35	HMCES (ENSOCUG00000005983)	COPG1 (ENSOCUG00000005970)	ENSOCUG00000009170	ENSOCUG00000008696
Pika	MODERN SPECIES	3334																ENSOPRG00000012915 #22	ENSOPRG00000012933 #24	ENSOPRG00000012956 #25
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00940000156047	ENSGT00940000156308	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Muroidea	ANCESTRAL SPECIES	37	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Chinese hamster chok1gshd	MODERN SPECIES	335														ENSCGRG00001019857	Tpra1 (ENSCGRG00001001126) #21	Mcm2 (ENSCGRG00001010056) #22	Podxl2 (ENSCGRG00001010445) #23	Abtb1 (ENSCGRG00001011986) #24	Mgll (ENSCGRG00001012642) #25	Kbtbd12 (ENSCGRG00001015928) #26	Sec61a1 (ENSCGRG00001016511) #27	Ruvbl1 (ENSCGRG00001017058) #29	Eefsec (ENSCGRG00001018089) #30	ENSCGRG00001019550	Dnajb8 (ENSCGRG00001014725) #31	Gata2 (ENSCGRG00001019672) #32	Rpn1 (ENSCGRG00001020104) #34	Rab7 (ENSCGRG00001021807) #35	H1f10 (ENSCGRG00001016043)	Hmces (ENSCGRG00001021867)	Copg1 (ENSCGRG00001023044)
Golden Hamster	MODERN SPECIES	643	Iqsec1 (ENSMAUG00000005597)	Slc41a3 (ENSMAUG00000015587)	ENSMAUG00000014077	Klf15 (ENSMAUG00000005299)	Cfap100 (ENSMAUG00000018814)	Zxdc (ENSMAUG00000019913)	Uroc1 (ENSMAUG00000003968)	Chst13 (ENSMAUG00000021792)	BC048671 (ENSMAUG00000020215)	ENSMAUG00000000996	Txnrd3 (ENSMAUG00000012587)	ENSMAUG00000010425	Plxna1 (ENSMAUG00000014014)	ENSMAUG00000017592	Tpra1 (ENSMAUG00000012903) #21	Mcm2 (ENSMAUG00000008722) #22	Podxl2 (ENSMAUG00000014710) #23	Abtb1 (ENSMAUG00000008631) #24	Mgll (ENSMAUG00000006292) #25	Kbtbd12 (ENSMAUG00000017044) #26	Sec61a1 (ENSMAUG00000003472) #27	Ruvbl1 (ENSMAUG00000001153) #29	Eefsec (ENSMAUG00000011197) #30	ENSMAUG00000021823	Dnajb8 (ENSMAUG00000009689) #31	Gata2 (ENSMAUG00000007355) #32	Rpn1 (ENSMAUG00000022244) #34	H1f10 (ENSMAUG00000010028)	Hmces (ENSMAUG00000007703)	ENSMAUG00000011845	Isy1 (ENSMAUG00000008793)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000009491.d	ENSGT00940000156915	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Northern American deer mouse	MODERN SPECIES	16	Anxa4 (ENSPEMG00000016652)	Gmcl1 (ENSPEMG00000013985)	ENSPEMG00000007464	Mxd1 (ENSPEMG00000024578)	Asprv1 (ENSPEMG00000018734)	Pcbp1 (ENSPEMG00000027674)	C87436 (ENSPEMG00000010949)	Tia1 (ENSPEMG00000001090)	Pcyox1 (ENSPEMG00000016789)	ENSPEMG00000014690	Fam136a (ENSPEMG00000017963)	Tgfa (ENSPEMG00000018354)	Add2 (ENSPEMG00000011378)	Figla (ENSPEMG00000008503)	Tpra1 (ENSPEMG00000013729) #21	Mcm2 (ENSPEMG00000017914) #22	Podxl2 (ENSPEMG00000012840) #23	Abtb1 (ENSPEMG00000010428) #24	Plxna1 (ENSPEMG00000021607)	Chchd6 (ENSPEMG00000000380)	Txnrd3 (ENSPEMG00000001160)	ENSPEMG00000024949	ENSPEMG00000026739	ENSPEMG00000027915	BC048671 (ENSPEMG00000021675)	Chst13 (ENSPEMG00000021441)	Uroc1 (ENSPEMG00000023009)	Zxdc (ENSPEMG00000023131)	Cfap100 (ENSPEMG00000007650)	Klf15 (ENSPEMG00000023025)	Aldh1l1 (ENSPEMG00000004481)
Prairie vole	MODERN SPECIES	84	Aldh1l1 (ENSMOCG00000003909)	Klf15 (ENSMOCG00000022079)	Cfap100 (ENSMOCG00000021845)	Zxdc (ENSMOCG00000017021)	Uroc1 (ENSMOCG00000004244)	Chst13 (ENSMOCG00000002222)	BC048671 (ENSMOCG00000016274)	ENSMOCG00000014528	ENSMOCG00000018983	ENSMOCG00000019875	Txnrd3 (ENSMOCG00000012893)	ENSMOCG00000002972	Chchd6 (ENSMOCG00000014679)	Plxna1 (ENSMOCG00000007977)	Tpra1 (ENSMOCG00000015000) #21	Mcm2 (ENSMOCG00000002693) #22	Podxl2 (ENSMOCG00000012699) #23	Abtb1 (ENSMOCG00000001980) #24	Mgll (ENSMOCG00000000279) #25	Kbtbd12 (ENSMOCG00000010634) #26	Sec61a1 (ENSMOCG00000012823) #27	Ruvbl1 (ENSMOCG00000020711) #29	Eefsec (ENSMOCG00000017748) #30	ENSMOCG00000013516	Dnajb8 (ENSMOCG00000009527) #31	Gata2 (ENSMOCG00000010158) #32	Rpn1 (ENSMOCG00000019555) #34	ENSMOCG00000002760 #35	Hmces (ENSMOCG00000016378)	Copg1 (ENSMOCG00000004622)	Cnbp (ENSMOCG00000002044)
Murinae	ANCESTRAL SPECIES	4	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Mus	ANCESTRAL SPECIES	12	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.a	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00860000136124	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Mus_A	ANCESTRAL SPECIES	7	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT01030000234553.b.b.d.c.b.a.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00860000136124	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.g.a #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Mus_B	ANCESTRAL SPECIES	15	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.b.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.d.b.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.d.b.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.a.b.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.b	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00860000136124	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.g.a #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Mus_C	ANCESTRAL SPECIES	18	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.b.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.d.b.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.a.b.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.a.a.a	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.a.a.c.a.b	ENSGT01030000234553.b.b.d.c.b.a.a.a.a.a.b.b.b.a.a.a	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00860000136124	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.g.a #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.s #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Steppe mouse	MODERN SPECIES	3245													ENSMSIG00000013044	ENSMSIG00000013052	Tpra1 (ENSMSIG00000013070) #21	Mcm2 (ENSMSIG00000013116) #22	Podxl2 (ENSMSIG00000013198) #23	ENSMSIG00000013222	Abtb1 (ENSMSIG00000013235) #24	Mgll (ENSMSIG00000013258) #25	Kbtbd12 (ENSMSIG00000013327) #26	Sec61a1 (ENSMSIG00000013368) #27	Ruvbl1 (ENSMSIG00000013395) #29	Eefsec (ENSMSIG00000013446) #30	Dnajb8 (ENSMSIG00000013500) #31	ENSMSIG00000013506	Gata2 (ENSMSIG00000013519) #32	Rpn1 (ENSMSIG00000013555) #34	Rab7 (ENSMSIG00000013617) #35	Hmces (ENSMSIG00000013812)	Copg1 (ENSMSIG00000013836)
spretus	MODERN SPECIES	15	Vmn1r50 (MGP_SPRETEiJ_G0029662)	Vmn1r49 (MGP_SPRETEiJ_G0029661)	MGP_SPRETEiJ_G0029660	MGP_SPRETEiJ_G0029659	MGP_SPRETEiJ_G0029658	MGP_SPRETEiJ_G0029657	Vmn1r43 (MGP_SPRETEiJ_G0029656)	Vmn1r42 (MGP_SPRETEiJ_G0029655)	MGP_SPRETEiJ_G0029654	MGP_SPRETEiJ_G0029653	Txnrd3 (MGP_SPRETEiJ_G0029652)	MGP_SPRETEiJ_G0029651	Plxna1 (MGP_SPRETEiJ_G0029650)	MGP_SPRETEiJ_G0029649	Tpra1 (MGP_SPRETEiJ_G0029648) #21	Mcm2 (MGP_SPRETEiJ_G0029647) #22	Podxl2 (MGP_SPRETEiJ_G0029646) #23	Abtb1 (MGP_SPRETEiJ_G0029645) #24	Mgll (MGP_SPRETEiJ_G0029644) #25	Kbtbd12 (MGP_SPRETEiJ_G0029643) #26	Sec61a1 (MGP_SPRETEiJ_G0029642) #27	Ruvbl1 (MGP_SPRETEiJ_G0029641) #29	Eefsec (MGP_SPRETEiJ_G0029640) #30	Dnajb8 (MGP_SPRETEiJ_G0029639) #31	Gata2 (MGP_SPRETEiJ_G0029638) #32	Rpn1 (MGP_SPRETEiJ_G0029637) #34	Rab7 (MGP_SPRETEiJ_G0029636) #35	MGP_SPRETEiJ_G0029635	Hmces (MGP_SPRETEiJ_G0029634)	Copg1 (MGP_SPRETEiJ_G0029633)	Cnbp (MGP_SPRETEiJ_G0029632)
Mouse	MODERN SPECIES	15	Vmn1r50 (ENSMUSG00000094553)	Vmn1r49 (ENSMUSG00000095932)	Vmn1r48 (ENSMUSG00000057592)	Vmn1r47 (ENSMUSG00000060724)	Vmn1r46 (ENSMUSG00000061653)	Vmn1r45 (ENSMUSG00000044248)	Vmn1r44 (ENSMUSG00000068234)	Vmn1r43 (ENSMUSG00000068231)	Vmn1r42 (ENSMUSG00000068232)	Vmn1r41 (ENSMUSG00000094586)	Vmn1r40 (ENSMUSG00000096051)	Txnrd3 (ENSMUSG00000000811)	Chchd6 (ENSMUSG00000030086)	Plxna1 (ENSMUSG00000030084)	Tpra1 (ENSMUSG00000002871) #21	Mcm2 (ENSMUSG00000002870) #22	Podxl2 (ENSMUSG00000033152) #23	Abtb1 (ENSMUSG00000030083) #24	Mgll (ENSMUSG00000033174) #25	Kbtbd12 (ENSMUSG00000033182) #26	Sec61a1 (ENSMUSG00000030082) #27	Ruvbl1 (ENSMUSG00000030079) #29	Eefsec (ENSMUSG00000033216) #30	Dnajb8 (ENSMUSG00000048206) #31	Gata2 (ENSMUSG00000015053) #32	Rpn1 (ENSMUSG00000030062) #34	Rab7 (ENSMUSG00000079477) #35	H1f10 (ENSMUSG00000044927)	Hmces (ENSMUSG00000030060)	Copg1 (ENSMUSG00000030058)	Cnbp (ENSMUSG00000030057)
Shrew mouse	MODERN SPECIES	11	Uroc1 (MGP_PahariEiJ_G0022388)	Chst13 (MGP_PahariEiJ_G0022387)	BC048671 (MGP_PahariEiJ_G0022386)	MGP_PahariEiJ_G0022385	MGP_PahariEiJ_G0022384	MGP_PahariEiJ_G0022383	MGP_PahariEiJ_G0022382	MGP_PahariEiJ_G0022381	Vmn1r44 (MGP_PahariEiJ_G0022380)	Vmn1r40 (MGP_PahariEiJ_G0022379)	Txnrd3 (MGP_PahariEiJ_G0022378)	Chchd6 (MGP_PahariEiJ_G0022377)	Plxna1 (MGP_PahariEiJ_G0022376)	MGP_PahariEiJ_G0022375	Tpra1 (MGP_PahariEiJ_G0022374) #21	Mcm2 (MGP_PahariEiJ_G0022373) #22	Podxl2 (MGP_PahariEiJ_G0022372) #23	Abtb1 (MGP_PahariEiJ_G0022371) #24	Mgll (MGP_PahariEiJ_G0022370) #25	Kbtbd12 (MGP_PahariEiJ_G0022369) #26	Sec61a1 (MGP_PahariEiJ_G0022368) #27	Ruvbl1 (MGP_PahariEiJ_G0022367) #29	Eefsec (MGP_PahariEiJ_G0022366) #30	Dnajb8 (MGP_PahariEiJ_G0022365) #31	Gata2 (MGP_PahariEiJ_G0022364) #32	Rpn1 (MGP_PahariEiJ_G0022363) #34	Rab7 (MGP_PahariEiJ_G0022362) #35	MGP_PahariEiJ_G0022361	Hmces (MGP_PahariEiJ_G0022360)	Copg1 (MGP_PahariEiJ_G0022359)	Cnbp (MGP_PahariEiJ_G0022358)
Rat	MODERN SPECIES	14	ENSRNOG00000065051	Vom1r100 (ENSRNOG00000064314)	Vom1r98 (ENSRNOG00000066943)	Vom1r97 (ENSRNOG00000068663)	Vom1r96 (ENSRNOG00000058628)	Vom1r94 (ENSRNOG00000031140)	Vom1r93 (ENSRNOG00000063902)	Vom1r92 (ENSRNOG00000067584)	Vom1r90 (ENSRNOG00000058136)	Txnrd3 (ENSRNOG00000059810)	Chchd6 (ENSRNOG00000060248)	Plxna1 (ENSRNOG00000017003)	AABR07061385.2 (ENSRNOG00000060843)	Prr20e (ENSRNOG00000026675)	Tpra1 (ENSRNOG00000016665) #21	Mcm2 (ENSRNOG00000016316) #22	Podxl2 (ENSRNOG00000016255) #23	Abtb1 (ENSRNOG00000015762) #24	Mgll (ENSRNOG00000014508) #25	Kbtbd12 (ENSRNOG00000061868) #26	Sec61a1 (ENSRNOG00000013743) #27	LOC685085 (ENSRNOG00000062325)	Ruvbl1 (ENSRNOG00000013195) #29	Eefsec (ENSRNOG00000012954) #30	Dnajb8 (ENSRNOG00000034088) #31	Gata2 (ENSRNOG00000012347) #32	ENSRNOG00000070501	Rpn1 (ENSRNOG00000046345) #34	Rab7a (ENSRNOG00000012247) #35	H1f10 (ENSRNOG00000027722)	Hmces (ENSRNOG00000010474)
Upper Galilee mountains blind mole rat	MODERN SPECIES	613	Fbln2 (ENSNGAG00000016556)	Hdac11 (ENSNGAG00000017728)	Nup210 (ENSNGAG00000018875)	Iqsec1 (ENSNGAG00000014890)	Slc41a3 (ENSNGAG00000015843)	Aldh1l1 (ENSNGAG00000017035)	Klf15 (ENSNGAG00000018845)	Cfap100 (ENSNGAG00000011837)	Zxdc (ENSNGAG00000022043)	Uroc1 (ENSNGAG00000020922)	Chst13 (ENSNGAG00000023581)	Txnrd3 (ENSNGAG00000016608)	Chchd6 (ENSNGAG00000023667)	Plxna1 (ENSNGAG00000007243)	Tpra1 (ENSNGAG00000016850) #21	Mcm2 (ENSNGAG00000023436) #22	Podxl2 (ENSNGAG00000005340) #23	Abtb1 (ENSNGAG00000002907) #24	Mgll (ENSNGAG00000013544) #25	ENSNGAG00000023399 #26	Sec61a1 (ENSNGAG00000021635) #27	Ruvbl1 (ENSNGAG00000001573) #29	ENSNGAG00000023278 #30	Dnajb8 (ENSNGAG00000010629) #31	Gata2 (ENSNGAG00000001268) #32	ENSNGAG00000024318 #34	Rab7 (ENSNGAG00000005194) #35	Hmces (ENSNGAG00000023995)	Copg1 (ENSNGAG00000021624)	Cnbp (ENSNGAG00000005084)	Isy1 (ENSNGAG00000015207)
Lesser Egyptian jerboa	MODERN SPECIES	116											Txnrd3 (ENSJJAG00000019781)	Chchd6 (ENSJJAG00000005785)	Plxna1 (ENSJJAG00000016193)	ENSJJAG00000009122	Tpra1 (ENSJJAG00000021306) #21	Mcm2 (ENSJJAG00000015084) #22	Podxl2 (ENSJJAG00000013158) #23	Abtb1 (ENSJJAG00000003349) #24	Mgll (ENSJJAG00000017428) #25	ENSJJAG00000014292	Kbtbd12 (ENSJJAG00000003832) #26	Sec61a1 (ENSJJAG00000000357) #27	Ruvbl1 (ENSJJAG00000022489) #29	ENSJJAG00000020703 #30	Dnajb8 (ENSJJAG00000014628) #31	Gata2 (ENSJJAG00000017283) #32	Rpn1 (ENSJJAG00000016770) #34	Rab7 (ENSJJAG00000014204) #35	Hmces (ENSJJAG00000013891)	Copg1 (ENSJJAG00000021522)	ENSJJAG00000010709
Kangaroo rat	MODERN SPECIES	472									Cfap100 (ENSDORG00000026244)	Zxdc (ENSDORG00000005724)	Uroc1 (ENSDORG00000005334)	Txnrd3 (ENSDORG00000000091)	Chchd6 (ENSDORG00000007486)	Plxna1 (ENSDORG00000004516)	Tpra1 (ENSDORG00000026236) #21	Mcm2 (ENSDORG00000005648) #22	Podxl2 (ENSDORG00000024076) #23	Abtb1 (ENSDORG00000024349) #24	Mgll (ENSDORG00000027520) #25	Kbtbd12 (ENSDORG00000013538) #26	Sec61a1 (ENSDORG00000000901) #27	Ruvbl1 (ENSDORG00000014592) #29	Eefsec (ENSDORG00000000264) #30	Dnajb8 (ENSDORG00000024345) #31	Gata2 (ENSDORG00000027471) #32	Rpn1 (ENSDORG00000011930) #34	Rab7 (ENSDORG00000027671) #35	Hmces (ENSDORG00000026017)	Copg1 (ENSDORG00000012844)	Cnbp (ENSDORG00000002919)	ENSDORG00000027354
Rodentia_A	ANCESTRAL SPECIES	34												ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Hystricomorpha	ANCESTRAL SPECIES	48	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Guinea pig	MODERN SPECIES	185															TPRA1 (ENSCPOG00000026182) #21	MCM2 (ENSCPOG00000010112) #22	PODXL2 (ENSCPOG00000001424) #23	ABTB1 (ENSCPOG00000003052) #24	MGLL (ENSCPOG00000003056) #25	KBTBD12 (ENSCPOG00000004863) #26	SEC61A1 (ENSCPOG00000004865) #27	RUVBL1 (ENSCPOG00000009530) #29	EEFSEC (ENSCPOG00000024352) #30	DNAJB8 (ENSCPOG00000030959) #31	GATA2 (ENSCPOG00000009802) #32	RPN1 (ENSCPOG00000004091) #34	RAB7A (ENSCPOG00000034570) #35	ENSCPOG00000038053	ENSCPOG00000037896	ENSCPOG00000020928
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00640000091558	ENSGT00940000158393	ENSGT00940000157922	ENSGT00940000153655.B	ENSGT00440000033958	ENSGT00940000155615	ENSGT00940000154583	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Long-tailed chinchilla	MODERN SPECIES	136	MRPS25 (ENSCLAG00000008381)	NR2C2 (ENSCLAG00000011082)	FGD5 (ENSCLAG00000011953)	C3orf20 (ENSCLAG00000013841)	CCDC174 (ENSCLAG00000011014)	GRIP2 (ENSCLAG00000013538)	SLC6A6 (ENSCLAG00000010187)	LSM3 (ENSCLAG00000015997)	XPC (ENSCLAG00000013400)	TMEM43 (ENSCLAG00000014810)	CHCHD4 (ENSCLAG00000015153)	TXNRD3 (ENSCLAG00000010439)	CHCHD6 (ENSCLAG00000011198)	PLXNA1 (ENSCLAG00000007472)	TPRA1 (ENSCLAG00000015612) #21	MCM2 (ENSCLAG00000013539) #22	PODXL2 (ENSCLAG00000011183) #23	ABTB1 (ENSCLAG00000010398) #24	MGLL (ENSCLAG00000010527) #25	KBTBD12 (ENSCLAG00000006214) #26	SEC61A1 (ENSCLAG00000004789) #27	RUVBL1 (ENSCLAG00000008051) #29	EEFSEC (ENSCLAG00000006973) #30	DNAJB8 (ENSCLAG00000006709) #31	GATA2 (ENSCLAG00000014980) #32	RPN1 (ENSCLAG00000016036) #34	ENSCLAG00000006333 #35	TSEN2 (ENSCLAG00000011090)	PPARG (ENSCLAG00000014746)	TIMP4 (ENSCLAG00000005949)	ENSCLAG00000005221
Degu	MODERN SPECIES	295				GRIP2 (ENSODEG00000001787)	ENSODEG00000001738	LSM3 (ENSODEG00000001726)	XPC (ENSODEG00000001699)	TMEM43 (ENSODEG00000001624)	ENSODEG00000001498	TXNRD3 (ENSODEG00000001387)	ENSODEG00000001312	ENSODEG00000018745	ENSODEG00000002815	PLXNA1 (ENSODEG00000002675)	TPRA1 (ENSODEG00000002274) #21	MCM2 (ENSODEG00000003959) #22	PODXL2 (ENSODEG00000003875) #23	ABTB1 (ENSODEG00000003795) #24	ENSODEG00000003742	MGLL (ENSODEG00000003434) #25	KBTBD12 (ENSODEG00000003397) #26	SEC61A1 (ENSODEG00000003340) #27	RUVBL1 (ENSODEG00000003323) #29	EEFSEC (ENSODEG00000002928) #30	DNAJB8 (ENSODEG00000018895) #31	GATA2 (ENSODEG00000002888) #32	RPN1 (ENSODEG00000002872) #34	ENSODEG00000002857	RAB7A (ENSODEG00000002835) #35	ENSODEG00000002819
Sciuridae	ANCESTRAL SPECIES	58												ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Marmotini	ANCESTRAL SPECIES	93												ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315.l #32	ENSGT00940000156315.k #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000018439	ENSGT00390000016313.a.b
Alpin marmot	MODERN SPECIES	128													TXNRD3 (ENSMMMG00000020753)	ENSMMMG00000020786	PLXNA1 (ENSMMMG00000020799)	MCM2 (ENSMMMG00000021074) #22	MGLL (ENSMMMG00000021444) #25	ENSMMMG00000021450 #26	SEC61A1 (ENSMMMG00000021456) #27	RUVBL1 (ENSMMMG00000021467) #29	EEFSEC (ENSMMMG00000021474) #30	DNAJB8 (ENSMMMG00000021483) #31	ENSMMMG00000021488	ENSMMMG00000021491 #32	RPN1 (ENSMMMG00000021493) #34	RAB7A (ENSMMMG00000021506) #35	COPG1 (ENSMMMG00000021526)	CNBP (ENSMMMG00000022080)	ENSMMMG00000022094	RAB43 (ENSMMMG00000022095)	GP9 (ENSMMMG00000022097)
Marmotini_b	ANCESTRAL SPECIES	169												ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315.l #32	ENSGT00940000156315.k #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000018439	ENSGT00390000016313.a.b
Arctic ground squirrel	MODERN SPECIES	473											ENSUPAG00010005097	TXNRD3 (ENSUPAG00010005060)	CHCHD6 (ENSUPAG00010005057)	PLXNA1 (ENSUPAG00010005036)	TPRA1 (ENSUPAG00010005011) #21	MCM2 (ENSUPAG00010005000) #22	PODXL2 (ENSUPAG00010004990) #23	ABTB1 (ENSUPAG00010004976) #24	MGLL (ENSUPAG00010004935) #25	KBTBD12 (ENSUPAG00010004923) #26	ENSUPAG00010004903 #27	RUVBL1 (ENSUPAG00010004889) #29	EEFSEC (ENSUPAG00010004881) #30	ENSUPAG00010004878	DNAJB8 (ENSUPAG00010004873) #31	GATA2 (ENSUPAG00010004865) #32	RPN1 (ENSUPAG00010004856) #34	RAB7A (ENSUPAG00010004842) #35	H1-10 (ENSUPAG00010004837)	COPG1 (ENSUPAG00010004499)	CNBP (ENSUPAG00010004475)
Squirrel	MODERN SPECIES	398												ENSSTOG00000030399	TXNRD3 (ENSSTOG00000014092)	ENSSTOG00000033062	PLXNA1 (ENSSTOG00000026715)	MCM2 (ENSSTOG00000021029) #22	ABTB1 (ENSSTOG00000021906) #24	MGLL (ENSSTOG00000023185) #25	ENSSTOG00000020065 #26	SEC61A1 (ENSSTOG00000002214) #27	RUVBL1 (ENSSTOG00000004659) #29	EEFSEC (ENSSTOG00000019802) #30	DNAJB8 (ENSSTOG00000026698) #31	GATA2 (ENSSTOG00000006138) #32	RPN1 (ENSSTOG00000004679) #34	RAB7A (ENSSTOG00000028487) #35	HMCES (ENSSTOG00000030763)	COPG1 (ENSSTOG00000003424)	CNBP (ENSSTOG00000000173)	ISY1 (ENSSTOG00000024769)	RAB43 (ENSSTOG00000024799)
Eurasian red squirrel	MODERN SPECIES	10	NUP210 (ENSSVLG00005015337)	HDAC11 (ENSSVLG00005015239)	FBLN2 (ENSSVLG00005015192)	WNT7A (ENSSVLG00005015151)	ENSSVLG00005015108	ENSSVLG00005015044	ENSSVLG00005014984	ENSSVLG00005014949	ENSSVLG00005014928	ENSSVLG00005014888	TXNRD3 (ENSSVLG00005014625)	ENSSVLG00005014556	CHCHD6 (ENSSVLG00005014522)	PLXNA1 (ENSSVLG00005014487)	TPRA1 (ENSSVLG00005014369) #21	MCM2 (ENSSVLG00005014217) #22	PODXL2 (ENSSVLG00005014162) #23	ABTB1 (ENSSVLG00005014044) #24	MGLL (ENSSVLG00005013883) #25	KBTBD12 (ENSSVLG00005013693) #26	SEC61A1 (ENSSVLG00005013613) #27	RUVBL1 (ENSSVLG00005013318) #29	EEFSEC (ENSSVLG00005013205) #30	ENSSVLG00005013112	DNAJB8 (ENSSVLG00005013080) #31	GATA2 (ENSSVLG00005013037) #32	RPN1 (ENSSVLG00005012900) #34	RAB7A (ENSSVLG00005012710) #35	H1-10 (ENSSVLG00005012682)	HMCES (ENSSVLG00005012539)	COPG1 (ENSSVLG00005012487)
Laurasiatheria	ANCESTRAL SPECIES	2		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Hedgehog	MODERN SPECIES	7078																ENSEEUG00000014799 #22
Laurasiatheria_a	ANCESTRAL SPECIES	3		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Artiodactyla	ANCESTRAL SPECIES	2				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Suina	ANCESTRAL SPECIES	1	ENSGT00390000000805	ENSGT00940000159820	ENSGT00390000000626	ENSGT00940000156398.d	ENSGT00940000156177	ENSGT00940000160993	ENSGT01030000234667.a.a.a.b	ENSGT00390000017582	ENSGT00940000160450	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Chacoan peccary	MODERN SPECIES	949															TPRA1 (ENSCWAG00000019837) #21	MCM2 (ENSCWAG00000019787) #22	PODXL2 (ENSCWAG00000019774) #23	ABTB1 (ENSCWAG00000019756) #24	MGLL (ENSCWAG00000019660) #25	KBTBD12 (ENSCWAG00000019608) #26	SEC61A1 (ENSCWAG00000019570) #27	RUVBL1 (ENSCWAG00000019553) #29	EEFSEC (ENSCWAG00000019470) #30	ENSCWAG00000019462	DNAJB8 (ENSCWAG00000019451) #31	GATA2 (ENSCWAG00000019399) #32	RPN1 (ENSCWAG00000019356) #34	RAB7A (ENSCWAG00000019290) #35	H1-10 (ENSCWAG00000019275)	HMCES (ENSCWAG00000019226)	COPG1 (ENSCWAG00000019186)
Pig	MODERN SPECIES	4	TMEM108 (ENSSSCG00000011635)	NPHP3 (ENSSSCG00000011632)	UBA5 (ENSSSCG00000011631)	ACKR4 (ENSSSCG00000011630)	ACAD11 (ENSSSCG00000011629)	DNAJC13 (ENSSSCG00000011628)	ACP3 (ENSSSCG00000011627)	ENSSSCG00000056342	CHST13 (ENSSSCG00000011625)	ENSSSCG00000011626	ENSSSCG00000045066	TXNRD3 (ENSSSCG00000023929)	CHCHD6 (ENSSSCG00000031557)	PLXNA1 (ENSSSCG00000024001)	TPRA1 (ENSSSCG00000011623) #21	MCM2 (ENSSSCG00000011624) #22	PODXL2 (ENSSSCG00000021397) #23	ABTB1 (ENSSSCG00000024827) #24	MGLL (ENSSSCG00000024134) #25	ENSSSCG00000054607	KBTBD12 (ENSSSCG00000011622) #26	SEC61A1 (ENSSSCG00000011621) #27	RUVBL1 (ENSSSCG00000011620) #29	EEFSEC (ENSSSCG00000011619) #30	ENSSSCG00000011617	DNAJB8 (ENSSSCG00000058052) #31	GATA2 (ENSSSCG00000011618) #32	RPN1 (ENSSSCG00000011612) #34	RAB7A (ENSSSCG00000011615) #35	H1-10 (ENSSSCG00000061599)	HMCES (ENSSSCG00000011611)
Artiodactyla_a	ANCESTRAL SPECIES	18				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Camelidae	ANCESTRAL SPECIES	7							ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Arabian camel	MODERN SPECIES	8							KLF15 (ENSCDRG00005017650)	ALDH1L1 (ENSCDRG00005017361)	SLC41A3 (ENSCDRG00005017182)	ENSCDRG00005017119	UROC1 (ENSCDRG00005017069)	TXNRD3 (ENSCDRG00005016948)	CHCHD6 (ENSCDRG00005016897)	PLXNA1 (ENSCDRG00005012667)	TPRA1 (ENSCDRG00005012385) #21	MCM2 (ENSCDRG00005012229) #22	PODXL2 (ENSCDRG00005012159) #23	ABTB1 (ENSCDRG00005012018) #24	MGLL (ENSCDRG00005011712) #25	KBTBD12 (ENSCDRG00005011561) #26	SEC61A1 (ENSCDRG00005011502) #27	RUVBL1 (ENSCDRG00005011446) #29	EEFSEC (ENSCDRG00005010991) #30	ENSCDRG00005010941 #31	GATA2 (ENSCDRG00005010903) #32	RPN1 (ENSCDRG00005010840) #34	RAB7A (ENSCDRG00005010579) #35	H1-10 (ENSCDRG00005010548)	HMCES (ENSCDRG00005010445)	COPG1 (ENSCDRG00005010147)	CNBP (ENSCDRG00005010027)
Artiodactyla_b	ANCESTRAL SPECIES	21				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Cetacea	ANCESTRAL SPECIES	7				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.b.a #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.j #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Odontoceti	ANCESTRAL SPECIES	5				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.b.a #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.j #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Odontoceti_a	ANCESTRAL SPECIES	5				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.b.a #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.j #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439.d	ENSGT00390000016313.a.b
Odontoceti_b	ANCESTRAL SPECIES	6				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.b.a #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.j #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439.d	ENSGT00390000016313.a.b
Monodontidae	ANCESTRAL SPECIES	4				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216.a	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A.b.a #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.j #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439.d	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Narwhal	MODERN SPECIES	310					CFAP100 (ENSMMNG00015014873)	KLF15 (ENSMMNG00015014858)	ALDH1L1 (ENSMMNG00015014798)	SLC41A3 (ENSMMNG00015014716)	ENSMMNG00015014677	UROC1 (ENSMMNG00015014633)	CHST13 (ENSMMNG00015014619)	TXNRD3 (ENSMMNG00015014461)	ENSMMNG00015014396	PLXNA1 (ENSMMNG00015014355)	TPRA1 (ENSMMNG00015014317) #21	MCM2 (ENSMMNG00015014295) #22	PODXL2 (ENSMMNG00015013667) #23	ABTB1 (ENSMMNG00015013635) #24	ENSMMNG00015013585 #25	KBTBD12 (ENSMMNG00015013549) #26	SEC61A1 (ENSMMNG00015013516) #27	ENSMMNG00015013489 #29	DNAJB8 (ENSMMNG00015013478) #31	EEFSEC (ENSMMNG00015013459) #30	GATA2 (ENSMMNG00015013442) #32	RPN1 (ENSMMNG00015013416) #34	RAB7A (ENSMMNG00015013387) #35	H1-10 (ENSMMNG00015013367)	HMCES (ENSMMNG00015013354)	COPG1 (ENSMMNG00015013321)	CNBP (ENSMMNG00015013299)
Beluga whale	MODERN SPECIES	66	CFAP100 (ENSDLEG00000012459)	KLF15 (ENSDLEG00000012456)	ALDH1L1 (ENSDLEG00000012433)	SLC41A3 (ENSDLEG00000012387)	ENSDLEG00000012374	ENSDLEG00000012356	ENSDLEG00000012256	UROC1 (ENSDLEG00000012148)	CHST13 (ENSDLEG00000012133)	ENSDLEG00000012121	TXNRD3 (ENSDLEG00000011052)	CHCHD6 (ENSDLEG00000010964)	PLXNA1 (ENSDLEG00000010868)	ENSDLEG00000010846 #20	TPRA1 (ENSDLEG00000010809) #21	MCM2 (ENSDLEG00000010766) #22	ENSDLEG00000010753 #23	ENSDLEG00000010743	ABTB1 (ENSDLEG00000010723) #24	MGLL (ENSDLEG00000010650) #25	KBTBD12 (ENSDLEG00000010611) #26	SEC61A1 (ENSDLEG00000010591) #27	RUVBL1 (ENSDLEG00000010575) #29	DNAJB8 (ENSDLEG00000010568) #31	EEFSEC (ENSDLEG00000010534) #30	GATA2 (ENSDLEG00000010521) #32	RPN1 (ENSDLEG00000010491) #34	RAB7A (ENSDLEG00000010466) #35	H1-10 (ENSDLEG00000010459)	HMCES (ENSDLEG00000010426)	COPG1 (ENSDLEG00000010326)
Vaquita	MODERN SPECIES	2				CFAP100 (ENSPSNG00000022656)	KLF15 (ENSPSNG00000022657)	ALDH1L1 (ENSPSNG00000022658)	SLC41A3 (ENSPSNG00000022659)	ZXDC (ENSPSNG00000022660)	UROC1 (ENSPSNG00000022661)	CHST13 (ENSPSNG00000022662)	ENSPSNG00000022663	TXNRD3 (ENSPSNG00000022664)	ENSPSNG00000022665	PLXNA1 (ENSPSNG00000022666)	TPRA1 (ENSPSNG00000022668) #21	MCM2 (ENSPSNG00000022669) #22	PODXL2 (ENSPSNG00000022670) #23	ABTB1 (ENSPSNG00000022671) #24	MGLL (ENSPSNG00000022673) #25	ENSPSNG00000022674 #26	SEC61A1 (ENSPSNG00000022676) #27	ENSPSNG00000022677 #29	EEFSEC (ENSPSNG00000022678) #30	ENSPSNG00000022679	DNAJB8 (ENSPSNG00000022680) #31	GATA2 (ENSPSNG00000022681) #32	RPN1 (ENSPSNG00000022682) #34	RAB7A (ENSPSNG00000022683) #35	H1-10 (ENSPSNG00000022685)	HMCES (ENSPSNG00000022686)	COPG1 (ENSPSNG00000022687)
Dolphin	MODERN SPECIES	1477															TPRA1 (ENSTTRG00000017103) #21	MCM2 (ENSTTRG00000017105) #22	PODXL2 (ENSTTRG00000017107) #23	ABTB1 (ENSTTRG00000017109) #24	MGLL (ENSTTRG00000017110) #25
Sperm whale	MODERN SPECIES	9	ENSPCTG00005018987	PSMD13 (ENSPCTG00005019034)	ENSPCTG00005019159	PLXNA1 (ENSPCTG00005019210)	CHCHD6 (ENSPCTG00005019316)	TXNRD3 (ENSPCTG00005019379)	CHST13 (ENSPCTG00005019410)	UROC1 (ENSPCTG00005019468)	ZXDC (ENSPCTG00005019762)	SLC41A3 (ENSPCTG00005019856)	ENSPCTG00005020054	ENSPCTG00005020094	ALDH1L1 (ENSPCTG00005020145)	KLF15 (ENSPCTG00005020670)	CFAP100 (ENSPCTG00005020699)	MCM2 (ENSPCTG00005020839) #22	PODXL2 (ENSPCTG00005020915) #23	ENSPCTG00005020956	ABTB1 (ENSPCTG00005020971) #24	MGLL (ENSPCTG00005021055) #25	KBTBD12 (ENSPCTG00005021183) #26	SEC61A1 (ENSPCTG00005021231) #27	RUVBL1 (ENSPCTG00005021315) #29	ENSPCTG00005021354 #30	GATA2 (ENSPCTG00005021380) #32	RPN1 (ENSPCTG00005021424) #34	EEFSEC (ENSPCTG00005021497) #30	RAB7A (ENSPCTG00005021510) #35	CNBP (ENSPCTG00005021559)	RAB43 (ENSPCTG00005021593)	GP9 (ENSPCTG00005021605)
Blue whale	MODERN SPECIES	2			CFAP100 (ENSBMSG00010009313)	KLF15 (ENSBMSG00010009299)	ALDH1L1 (ENSBMSG00010009202)	ENSBMSG00010009159	SLC41A3 (ENSBMSG00010009132)	ZXDC (ENSBMSG00010009104)	UROC1 (ENSBMSG00010009072)	CHST13 (ENSBMSG00010009052)	ENSBMSG00010009042	TXNRD3 (ENSBMSG00010008948)	CHCHD6 (ENSBMSG00010008862)	PLXNA1 (ENSBMSG00010012942)	TPRA1 (ENSBMSG00010012862) #21	MCM2 (ENSBMSG00010012822) #22	PODXL2 (ENSBMSG00010012808) #23	ABTB1 (ENSBMSG00010012797) #24	MGLL (ENSBMSG00010012751) #25	KBTBD12 (ENSBMSG00010012727) #26	SEC61A1 (ENSBMSG00010012693) #27	ENSBMSG00010012665 #29	DNAJB8 (ENSBMSG00010012656) #31	EEFSEC (ENSBMSG00010012611) #30	GATA2 (ENSBMSG00010012574) #32	RPN1 (ENSBMSG00010012549) #34	RAB7A (ENSBMSG00010012513) #35	H1-10 (ENSBMSG00010012485)	HMCES (ENSBMSG00010012470)	COPG1 (ENSBMSG00010012394)	CNBP (ENSBMSG00010012370)
Pecora	ANCESTRAL SPECIES	17				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Yarkand deer	MODERN SPECIES	16					CFAP100 (ENSCHYG00000013643)	KLF15 (ENSCHYG00000013892)	ALDH1L1 (ENSCHYG00000013957)	SLC41A3 (ENSCHYG00000014509)	ZXDC (ENSCHYG00000014680)	UROC1 (ENSCHYG00000014990)	CHST13 (ENSCHYG00000015340)	TXNRD3 (ENSCHYG00000015385)	ENSCHYG00000015490	ENSCHYG00000015704	TPRA1 (ENSCHYG00000016085) #21	MCM2 (ENSCHYG00000016311) #22	PODXL2 (ENSCHYG00000016661) #23	ABTB1 (ENSCHYG00000016715) #24	MGLL (ENSCHYG00000016817) #25	KBTBD12 (ENSCHYG00000017212) #26	ENSCHYG00000017330	SEC61A1 (ENSCHYG00000017378) #27	RUVBL1 (ENSCHYG00000017903) #29	EEFSEC (ENSCHYG00000018386) #30	DNAJB8 (ENSCHYG00000018438) #31	ENSCHYG00000018454	GATA2 (ENSCHYG00000018476) #32	ENSCHYG00000018559 #34	ENSCHYG00000018740 #35	H1-10 (ENSCHYG00000018910)	HMCES (ENSCHYG00000018936)
Percora_a	ANCESTRAL SPECIES	19				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Bovidae	ANCESTRAL SPECIES	19				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Caprinae	ANCESTRAL SPECIES	15				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Rambouillet Sheep	MODERN SPECIES	10					CFAP100 (ENSOARG00020019822)	KLF15 (ENSOARG00020019792)	ENSOARG00020019756	SLC41A3 (ENSOARG00020019589)	UROC1 (ENSOARG00020019321)	CHST13 (ENSOARG00020019293)	ENSOARG00020019263	TXNRD3 (ENSOARG00020019156)	ENSOARG00020019013	PLXNA1 (ENSOARG00020018631)	TPRA1 (ENSOARG00020018474) #21	MCM2 (ENSOARG00020018340) #22	PODXL2 (ENSOARG00020018264) #23	ENSOARG00020018222	MGLL (ENSOARG00020017820) #25	KBTBD12 (ENSOARG00020017695) #26	SEC61A1 (ENSOARG00020017586) #27	RUVBL1 (ENSOARG00020017524) #29	EEFSEC (ENSOARG00020017339) #30	ENSOARG00020017282	DNAJB8 (ENSOARG00020017252) #31	GATA2 (ENSOARG00020017118) #32	ENSOARG00020017009 #34	RAB7A (ENSOARG00020016775) #35	ENSOARG00020016757	H1-10 (ENSOARG00020016747)	HMCES (ENSOARG00020016666)
Goat	MODERN SPECIES	108															TPRA1 (ENSCHIG00000016889) #21	MCM2 (ENSCHIG00000019820) #22	PODXL2 (ENSCHIG00000023197) #23
Bovinae	ANCESTRAL SPECIES	16				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Bos	ANCESTRAL SPECIES	16				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00950000183010.a.b.a.a.a.a.a.a.a.b.a	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439
Bos_b	ANCESTRAL SPECIES	17			ENSGT01100000263503.E.d.a.a.b.b.k.b	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00950000183010.a.b.a.a.a.a.a.a.a.b.a	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439
Cow	MODERN SPECIES	14			ENSBTAG00000046534	CFAP100 (ENSBTAG00000019402)	KLF15 (ENSBTAG00000008313)	ALDH1L1 (ENSBTAG00000014470)	SLC41A3 (ENSBTAG00000005617)	ZXDC (ENSBTAG00000009874)	UROC1 (ENSBTAG00000008774)	CHST13 (ENSBTAG00000008778)	C22H3orf22 (ENSBTAG00000039194)	TXNRD3 (ENSBTAG00000011795)	CHCHD6 (ENSBTAG00000030855)	PLXNA1 (ENSBTAG00000009159)	TPRA1 (ENSBTAG00000022575) #21	MCM2 (ENSBTAG00000014380) #22	PODXL2 (ENSBTAG00000018031) #23	ABTB1 (ENSBTAG00000018238) #24	MGLL (ENSBTAG00000018248) #25	KBTBD12 (ENSBTAG00000011547) #26	SEC61A1 (ENSBTAG00000004937) #27	RUVBL1 (ENSBTAG00000020998) #29	EEFSEC (ENSBTAG00000030962) #30	ENSBTAG00000051049	DNAJB8 (ENSBTAG00000006179) #31	GATA2 (ENSBTAG00000019707) #32	RPN1 (ENSBTAG00000005191) #34	ENSBTAG00000030941	RAB7A (ENSBTAG00000010193) #35	H1-10 (ENSBTAG00000040116)	HMCES (ENSBTAG00000030930)
Hybrid Bos Indicus	MODERN SPECIES	14			ENSBIXG00005011495	CFAP100 (ENSBIXG00005011454)	KLF15 (ENSBIXG00005000465)	ALDH1L1 (ENSBIXG00005001102)	SLC41A3 (ENSBIXG00005007101)	ZXDC (ENSBIXG00005011270)	UROC1 (ENSBIXG00005001051)	CHST13 (ENSBIXG00005011148)	ENSBIXG00005001025	TXNRD3 (ENSBIXG00005011121)	ENSBIXG00005011053	PLXNA1 (ENSBIXG00005001001)	ENSBIXG00005000580 #21	MCM2 (ENSBIXG00005010892) #22	PODXL2 (ENSBIXG00005010863) #23	ENSBIXG00005010805	MGLL (ENSBIXG00005010790) #25	KBTBD12 (ENSBIXG00005010709) #26	SEC61A1 (ENSBIXG00005000921) #27	RUVBL1 (ENSBIXG00005010629) #29	EEFSEC (ENSBIXG00005010586) #30	ENSBIXG00005000713	DNAJB8 (ENSBIXG00005010579) #31	GATA2 (ENSBIXG00005010558) #32	RPN1 (ENSBIXG00005001966) #34	ENSBIXG00005005134	RAB7A (ENSBIXG00005029044) #35	H1-10 (ENSBIXG00005005106)	HMCES (ENSBIXG00005028993)
Bos_a	ANCESTRAL SPECIES	9				ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630.i.a #34	ENSGT00950000183010.a.b.a.a.a.a.a.a.a.b.a	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Domestic yak	MODERN SPECIES	14				CFAP100 (ENSBGRG00000022740)	KLF15 (ENSBGRG00000022957)	ALDH1L1 (ENSBGRG00000023010)	SLC41A3 (ENSBGRG00000023166)	ZXDC (ENSBGRG00000023297)	UROC1 (ENSBGRG00000023472)	CHST13 (ENSBGRG00000023785)	ENSBGRG00000023833	TXNRD3 (ENSBGRG00000023918)	CHCHD6 (ENSBGRG00000024662)	PLXNA1 (ENSBGRG00000025111)	ENSBGRG00000026549 #21	MCM2 (ENSBGRG00000010580) #22	PODXL2 (ENSBGRG00000010818) #23	ENSBGRG00000011063 #25	ENSBGRG00000011409	KBTBD12 (ENSBGRG00000011463) #26	SEC61A1 (ENSBGRG00000011620) #27	RUVBL1 (ENSBGRG00000012210) #29	EEFSEC (ENSBGRG00000012475) #30	ENSBGRG00000012674 #31	ENSBGRG00000012704 #32	RPN1 (ENSBGRG00000012844) #34	ENSBGRG00000012940	RAB7A (ENSBGRG00000013027) #35	ENSBGRG00000013189	HMCES (ENSBGRG00000013212)	COPG1 (ENSBGRG00000013407)
Wild yak	MODERN SPECIES	1037															ENSBMUG00000017733 #21	MCM2 (ENSBMUG00000017754) #22
American bison	MODERN SPECIES	2526																MCM2 (ENSBBBG00000004070) #22
Siberian musk deer	MODERN SPECIES	195														PLXNA1 (ENSMMSG00000020038)	TPRA1 (ENSMMSG00000020007) #21	MCM2 (ENSMMSG00000019878) #22
Laurasiatheria_b	ANCESTRAL SPECIES	2		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Carnivora	ANCESTRAL SPECIES	6		ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Canidae	ANCESTRAL SPECIES		ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00910000147012 #20	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00900000143336.d.a	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00900000143259	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439
Dog	MODERN SPECIES	12	ZNF660 (ENSCAFG00845011143)	SLC41A3 (ENSCAFG00845011187)	ENSCAFG00845011541	ENSCAFG00845011924	KLF15 (ENSCAFG00845011948)	CFAP100 (ENSCAFG00845012088)	ZXDC (ENSCAFG00845012175)	UROC1 (ENSCAFG00845012399)	CHST13 (ENSCAFG00845012493)	C3orf22 (ENSCAFG00845012512)	TXNRD3 (ENSCAFG00845012644)	PLXNA1 (ENSCAFG00845013076)	ENSCAFG00845013657 #19	ENSCAFG00845013670 #20	TPRA1 (ENSCAFG00845013707) #21	MCM2 (ENSCAFG00845013762) #22	PODXL2 (ENSCAFG00845013813) #23	ABTB1 (ENSCAFG00845013853) #24	MGLL (ENSCAFG00845017684) #25	KBTBD12 (ENSCAFG00845018022) #26	SEC61A1 (ENSCAFG00845018244) #27	RUVBL1 (ENSCAFG00845018527) #29	ENSCAFG00845018606	EEFSEC (ENSCAFG00845018712) #30	DNAJB8 (ENSCAFG00845018870) #31	ENSCAFG00845018909	GATA2 (ENSCAFG00845018934) #32	ENSCAFG00845019001	RPN1 (ENSCAFG00845019047) #34	RAB7A (ENSCAFG00845019242) #35	H1FX (ENSCAFG00845019714)
Dingo	MODERN SPECIES	236	ZNF197 (ENSCAFG00020000786)	ZNF660 (ENSCAFG00020000794)	SLC41A3 (ENSCAFG00020000803)	ALDH1L1 (ENSCAFG00020000824)	ENSCAFG00020000841	KLF15 (ENSCAFG00020000848)	CFAP100 (ENSCAFG00020000858)	ZXDC (ENSCAFG00020000879)	UROC1 (ENSCAFG00020000941)	CHST13 (ENSCAFG00020000995)	C3orf22 (ENSCAFG00020001002)	TXNRD3 (ENSCAFG00020001171)	CHCHD6 (ENSCAFG00020002738)	PLXNA1 (ENSCAFG00020002883)	TPRA1 (ENSCAFG00020004776) #21	MCM2 (ENSCAFG00020004780) #22	PODXL2 (ENSCAFG00020004787) #23	ABTB1 (ENSCAFG00020004789) #24	MGLL (ENSCAFG00020004791) #25	KBTBD12 (ENSCAFG00020004798) #26	SEC61A1 (ENSCAFG00020004799) #27	RUVBL1 (ENSCAFG00020004803) #29	ENSCAFG00020004807	EEFSEC (ENSCAFG00020004811) #30	DNAJB8 (ENSCAFG00020004815) #31	ENSCAFG00020004821	GATA2 (ENSCAFG00020004824) #32	ENSCAFG00020004831	RPN1 (ENSCAFG00020004839) #34	RAB7A (ENSCAFG00020004847) #35	H1-10 (ENSCAFG00020004851)
Red fox	MODERN SPECIES	8	ZNF35 (ENSVVUG00000021550)	ZNF197 (ENSVVUG00000021549)	ENSVVUG00000021547	SLC41A3 (ENSVVUG00000021538)	ALDH1L1 (ENSVVUG00000021527)	KLF15 (ENSVVUG00000021522)	CFAP100 (ENSVVUG00000021517)	ZXDC (ENSVVUG00000021514)	UROC1 (ENSVVUG00000021508)	CUNH3orf22 (ENSVVUG00000021504)	TXNRD3 (ENSVVUG00000018617)	CHCHD6 (ENSVVUG00000018555)	PLXNA1 (ENSVVUG00000018526)	ENSVVUG00000018521 #19	TPRA1 (ENSVVUG00000018518) #21	MCM2 (ENSVVUG00000018515) #22	PODXL2 (ENSVVUG00000018512) #23	ABTB1 (ENSVVUG00000018416) #24	MGLL (ENSVVUG00000018407) #25	KBTBD12 (ENSVVUG00000018401) #26	SEC61A1 (ENSVVUG00000018390) #27	RUVBL1 (ENSVVUG00000018377) #29	ENSVVUG00000018375	EEFSEC (ENSVVUG00000018372) #30	ENSVVUG00000018366	DNAJB8 (ENSVVUG00000018364) #31	GATA2 (ENSVVUG00000018360) #32	RPN1 (ENSVVUG00000018354) #34	RAB7A (ENSVVUG00000018308) #35	H1-10 (ENSVVUG00000018298)	HMCES (ENSVVUG00000018293)
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00940000162289	ENSGT00940000162801	ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Mustelinae	ANCESTRAL SPECIES	18						ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
American mink	MODERN SPECIES	147							GDAP2 (ENSNVIG00000017448)	WDR3 (ENSNVIG00000017483)	SPAG17 (ENSNVIG00000017552)	ENSNVIG00000017640	ENSNVIG00000017651	TXNRD3 (ENSNVIG00000017669)	CHCH6 (ENSNVIG00000017817)	PLXNA1 (ENSNVIG00000017884)	TPRA1 (ENSNVIG00000017919) #21	MCM2 (ENSNVIG00000017938) #22	PODXL2 (ENSNVIG00000017970) #23	ABTB1 (ENSNVIG00000018008) #24	MGLL (ENSNVIG00000018064) #25	KBTBD12 (ENSNVIG00000018133) #26	S61A1 (ENSNVIG00000018169) #27	RUVBL1 (ENSNVIG00000018223) #29	EEFSEC (ENSNVIG00000018235) #30	ENSNVIG00000018247	DNAJB8 (ENSNVIG00000018251) #31	GATA2 (ENSNVIG00000018256) #32	RPN1 (ENSNVIG00000018278) #34	ENSNVIG00000018317 #35	ENSNVIG00000018366 #36	H1-10 (ENSNVIG00000018376)	HMCES (ENSNVIG00000018380)
Ferret	MODERN SPECIES	163					KLF15 (ENSMPUG00000017390)	CFAP100 (ENSMPUG00000017389)	ZXDC (ENSMPUG00000017379)	UROC1 (ENSMPUG00000017376)	CHST13 (ENSMPUG00000017374)	ENSMPUG00000017372	TXNRD3 (ENSMPUG00000017369)	CHCHD6 (ENSMPUG00000017366)	PLXNA1 (ENSMPUG00000017363)	ENSMPUG00000017360	TPRA1 (ENSMPUG00000017359) #21	MCM2 (ENSMPUG00000017353) #22	PODXL2 (ENSMPUG00000017350) #23	ABTB1 (ENSMPUG00000017345) #24	MGLL (ENSMPUG00000017344) #25	KBTBD12 (ENSMPUG00000017343) #26	SEC61A1 (ENSMPUG00000017342) #27	RUVBL1 (ENSMPUG00000017341) #29	EEFSEC (ENSMPUG00000017340) #30	DNAJB8 (ENSMPUG00000017339) #31	GATA2 (ENSMPUG00000017338) #32	ENSMPUG00000017337	RPN1 (ENSMPUG00000017335) #34	RAB7A (ENSMPUG00000017333) #35	HMCES (ENSMPUG00000017327)	ENSMPUG00000017316	CNBP (ENSMPUG00000017315)
Ursidae	ANCESTRAL SPECIES	11	ENSGT00940000162289	ENSGT00940000162801	ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323.b #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Ursus	ANCESTRAL SPECIES	43	ENSGT00940000162801	ENSGT00940000163766	ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01010000223084	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323.b #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Polar bear	MODERN SPECIES	210		ZNF35 (ENSUMAG00000013450)	ZNF197 (ENSUMAG00000013454)	ZNF660 (ENSUMAG00000013458)	SLC41A3 (ENSUMAG00000013475)	ALDH1L1 (ENSUMAG00000013630)	KLF15 (ENSUMAG00000013967)	ENSUMAG00000013971	ENSUMAG00000013976	UROC1 (ENSUMAG00000013982)	ENSUMAG00000014003	TXNRD3 (ENSUMAG00000014041)	ENSUMAG00000014342	PLXNA1 (ENSUMAG00000014352)	TPRA1 (ENSUMAG00000014378) #21	MCM2 (ENSUMAG00000014421) #22	PODXL2 (ENSUMAG00000014839) #23	ABTB1 (ENSUMAG00000014845) #24	MGLL (ENSUMAG00000014853) #25	KBTBD12 (ENSUMAG00000014859) #26	SEC61A1 (ENSUMAG00000014866) #27	RUVBL1 (ENSUMAG00000014877) #29	EEFSEC (ENSUMAG00000014890) #30	ENSUMAG00000014901 #31	GATA2 (ENSUMAG00000014913) #32	RPN1 (ENSUMAG00000014970) #34	RAB7A (ENSUMAG00000015081) #35	ENSUMAG00000015085 #36	HMCES (ENSUMAG00000015093)	COPG1 (ENSUMAG00000015102)	ENSUMAG00000015120
American black bear	MODERN SPECIES	1838															TPRA1 (ENSUAMG00000021537) #21	MCM2 (ENSUAMG00000021536) #22	PODXL2 (ENSUAMG00000021535) #23	ABTB1 (ENSUAMG00000021534) #24	MGLL (ENSUAMG00000021533) #25
Giant Panda	MODERN SPECIES	14	ENSAMEG00000006384	ENSAMEG00000001309	ENSAMEG00000018703	ENSAMEG00000004769	ENSAMEG00000004768	ENSAMEG00000006403	CFAP100 (ENSAMEG00000006408)	ZXDC (ENSAMEG00000006438)	UROC1 (ENSAMEG00000006448)	ENSAMEG00000029947	TXNRD3 (ENSAMEG00000006480)	CHCHD6 (ENSAMEG00000026556)	PLXNA1 (ENSAMEG00000006541)	ENSAMEG00000019709	TPRA1 (ENSAMEG00000014977) #21	MCM2 (ENSAMEG00000014998) #22	PODXL2 (ENSAMEG00000015046) #23	ABTB1 (ENSAMEG00000015059) #24	ENSAMEG00000015086 #25	KBTBD12 (ENSAMEG00000015099) #26	SEC61A1 (ENSAMEG00000015108) #27	RUVBL1 (ENSAMEG00000015136) #29	EEFSEC (ENSAMEG00000015165) #30	ENSAMEG00000028762	DNAJB8 (ENSAMEG00000018919) #31	GATA2 (ENSAMEG00000015180) #32	ENSAMEG00000015201 #34	ENSAMEG00000024109 #36	ENSAMEG00000026307	ENSAMEG00000015269	ENSAMEG00000015249 #35
Felidae	ANCESTRAL SPECIES	17				ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.w #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Panthera	ANCESTRAL SPECIES	1	ENSGT00950000182926.b.c	ENSGT00940000156732	ENSGT00940000154390.A.j	ENSGT00390000011179	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.w #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Tiger	MODERN SPECIES	564						ALDH1L1 (ENSPTIG00000014274)	KLF15 (ENSPTIG00000014256)	CFAP100 (ENSPTIG00000014234)	ZXDC (ENSPTIG00000014220)	UROC1 (ENSPTIG00000014212)	C3orf22 (ENSPTIG00000014195)	TXNRD3 (ENSPTIG00000014110)	CHCHD6 (ENSPTIG00000014085)	PLXNA1 (ENSPTIG00000014058)	TPRA1 (ENSPTIG00000014035) #21	MCM2 (ENSPTIG00000014022) #22	PODXL2 (ENSPTIG00000014008) #23	ABTB1 (ENSPTIG00000013992) #24	MGLL (ENSPTIG00000013965) #25	KBTBD12 (ENSPTIG00000013942) #26	SEC61A1 (ENSPTIG00000013892) #27	RUVBL1 (ENSPTIG00000013864) #29	EEFSEC (ENSPTIG00000013855) #30	ENSPTIG00000013847	DNAJB8 (ENSPTIG00000009261) #31	GATA2 (ENSPTIG00000013832) #32	RPN1 (ENSPTIG00000013813) #34
Panthera_a	ANCESTRAL SPECIES		ENSGT00950000182926.b.c	ENSGT00940000156732	ENSGT00940000154390.A.j	ENSGT00390000011179	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.w #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
lion	MODERN SPECIES	2	PGAM2 (ENSPLOG00000005255)	DBNL (ENSPLOG00000005208)	URGCP (ENSPLOG00000005169)	MRPS24 (ENSPLOG00000005156)	ALDH1L1 (ENSPLOG00000004392)	KLF15 (ENSPLOG00000004355)	CFAP100 (ENSPLOG00000004337)	ZXDC (ENSPLOG00000004315)	UROC1 (ENSPLOG00000004294)	CHST13 (ENSPLOG00000004278)	C3orf22 (ENSPLOG00000004263)	TXNRD3 (ENSPLOG00000004215)	CHCHD6 (ENSPLOG00000004177)	PLXNA1 (ENSPLOG00000004165)	TPRA1 (ENSPLOG00000004134) #21	MCM2 (ENSPLOG00000004115) #22	PODXL2 (ENSPLOG00000004100) #23	ABTB1 (ENSPLOG00000004091) #24	MGLL (ENSPLOG00000004066) #25	KBTBD12 (ENSPLOG00000004046) #26	SEC61A1 (ENSPLOG00000004023) #27	RUVBL1 (ENSPLOG00000003920) #29	EEFSEC (ENSPLOG00000003896) #30	ENSPLOG00000003882	DNAJB8 (ENSPLOG00000003879) #31	GATA2 (ENSPLOG00000003865) #32	RPN1 (ENSPLOG00000003850) #34	ENSPLOG00000003821 #35	ENSPLOG00000003798 #36	H1-10 (ENSPLOG00000003787)	HMCES (ENSPLOG00000003766)
leopard	MODERN SPECIES	135					ENSPPRG00000001408	ENSPPRG00000001423	KLF15 (ENSPPRG00000001430)	CFAP100 (ENSPPRG00000001466)	ZXDC (ENSPPRG00000001552)	UROC1 (ENSPPRG00000001664)	CHST13 (ENSPPRG00000001750)	C3orf22 (ENSPPRG00000001767)	TXNRD3 (ENSPPRG00000001957)	PLXNA1 (ENSPPRG00000002031)	TPRA1 (ENSPPRG00000002097) #21	MCM2 (ENSPPRG00000002132) #22	PODXL2 (ENSPPRG00000002169) #23	ABTB1 (ENSPPRG00000002183) #24	MGLL (ENSPPRG00000002430) #25	KBTBD12 (ENSPPRG00000002619) #26	SEC61A1 (ENSPPRG00000002652) #27	RUVBL1 (ENSPPRG00000002788) #29	ENSPPRG00000002794 #30	EEFSEC (ENSPPRG00000002846) #30	ENSPPRG00000002912	DNAJB8 (ENSPPRG00000011004) #31	GATA2 (ENSPPRG00000002963) #32	RPN1 (ENSPPRG00000003007) #34	ENSPPRG00000003104 #35	ENSPPRG00000011010 #36	H1-10 (ENSPPRG00000011017)
Cat	MODERN SPECIES	1	AEBP1 (ENSFCAG00000014358)	POLM (ENSFCAG00000029004)	PGAM2 (ENSFCAG00000023275)	DBNL (ENSFCAG00000014355)	URGCP (ENSFCAG00000031416)	MRPS24 (ENSFCAG00000027947)	ENSFCAG00000001776	KLF15 (ENSFCAG00000015732)	CFAP100 (ENSFCAG00000015734)	ZXDC (ENSFCAG00000015744)	UROC1 (ENSFCAG00000015746)	CHST13 (ENSFCAG00000032669)	ENSFCAG00000049526	TXNRD3 (ENSFCAG00000000974)	PLXNA1 (ENSFCAG00000000976)	MCM2 (ENSFCAG00000013550) #22	TPRA1 (ENSFCAG00000028259) #21	ABTB1 (ENSFCAG00000013553) #24	MGLL (ENSFCAG00000026204) #25	KBTBD12 (ENSFCAG00000022102) #26	SEC61A1 (ENSFCAG00000008819) #27	RUVBL1 (ENSFCAG00000008821) #29	EEFSEC (ENSFCAG00000006153) #30	ENSFCAG00000045815	DNAJB8 (ENSFCAG00000001739) #31	GATA2 (ENSFCAG00000006154) #32	RPN1 (ENSFCAG00000008222) #34	ENSFCAG00000022971 #35	ENSFCAG00000033094 #36	H1-10 (ENSFCAG00000044498)	HMCES (ENSFCAG00000045478)
Laurasiatheria_c	ANCESTRAL SPECIES	2			ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT00390000018439
Chiroptera	ANCESTRAL SPECIES	76				ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Microchiroptera	ANCESTRAL SPECIES	56					ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Greater horseshoe bat	MODERN SPECIES	10	ENSRFEG00010009511	SLC41A3 (ENSRFEG00010009372)	ALDH1L1 (ENSRFEG00010009061)	ENSRFEG00010008962	KLF15 (ENSRFEG00010008935)	CFAP100 (ENSRFEG00010008614)	ZXDC (ENSRFEG00010008385)	UROC1 (ENSRFEG00010008245)	CHST13 (ENSRFEG00010008204)	ENSRFEG00010008188	TXNRD3 (ENSRFEG00010007252)	CHCHD6 (ENSRFEG00010007121)	PLXNA1 (ENSRFEG00010007057)	ENSRFEG00010007030	TPRA1 (ENSRFEG00010006977) #21	MCM2 (ENSRFEG00010006924) #22	PODXL2 (ENSRFEG00010006876) #23	ENSRFEG00010006843	MGLL (ENSRFEG00010006765) #25	ENSRFEG00010006714	KBTBD12 (ENSRFEG00010006684) #26	SEC61A1 (ENSRFEG00010006596) #27	RUVBL1 (ENSRFEG00010006540) #29	EEFSEC (ENSRFEG00010006458) #30	DNAJB8 (ENSRFEG00010006393) #31	GATA2 (ENSRFEG00010006359) #32	RPN1 (ENSRFEG00010006310) #34	RAB7A (ENSRFEG00010006246) #35	H1-10 (ENSRFEG00010006197)	HMCES (ENSRFEG00010006155)	COPG1 (ENSRFEG00010006037)
Microbat	MODERN SPECIES	1027															TPRA1 (ENSMLUG00000007464) #21	MCM2 (ENSMLUG00000017140) #22	PODXL2 (ENSMLUG00000017144) #23	ABTB1 (ENSMLUG00000017150) #24	MGLL (ENSMLUG00000017152) #25	KBTBD12 (ENSMLUG00000001141) #26	SEC61A1 (ENSMLUG00000004248) #27	RUVBL1 (ENSMLUG00000004254) #29	EEFSEC (ENSMLUG00000004261) #30	DNAJB8 (ENSMLUG00000001820) #31	GATA2 (ENSMLUG00000005506) #32	RPN1 (ENSMLUG00000017213) #34	RAB7A (ENSMLUG00000008454) #35	HMCES (ENSMLUG00000010630)	COPG1 (ENSMLUG00000012542)	CNBP (ENSMLUG00000012554)	ENSMLUG00000025147
Megabat	MODERN SPECIES	5404																MCM2 (ENSPVAG00000001963) #22
Equus	ANCESTRAL SPECIES	5				ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000001542 #19	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00900000143259	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000007704 #36	ENSGT00730000111536	ENSGT01090000263326
Donkey	MODERN SPECIES	13				ENSEASG00005006151	ALDH1L1 (ENSEASG00005006155)	KLF15 (ENSEASG00005006160)	CFAP100 (ENSEASG00005006165)	ZXDC (ENSEASG00005006173)	UROC1 (ENSEASG00005006181)	CHST13 (ENSEASG00005006186)	TXNRD3 (ENSEASG00005006188)	CHCHD6 (ENSEASG00005006190)	PLXNA1 (ENSEASG00005006242)	ENSEASG00005034594 #19	ENSEASG00005006757 #21	MCM2 (ENSEASG00005006759) #22	PODXL2 (ENSEASG00005006765) #23	ABTB1 (ENSEASG00005006769) #24	MGLL (ENSEASG00005024928) #25	KBTBD12 (ENSEASG00005006776) #26	SEC61A1 (ENSEASG00005006778) #27	RUVBL1 (ENSEASG00005006781) #29	EEFSEC (ENSEASG00005006786) #30	ENSEASG00005006788	ENSEASG00005006791 #31	GATA2 (ENSEASG00005006794) #32	RPN1 (ENSEASG00005006797) #34	ENSEASG00005037828 #36	ENSEASG00005006800 #35	ENSEASG00005034619	ENSEASG00005015815
Horse	MODERN SPECIES	7	ENSECAG00000050448	ALDH1L1 (ENSECAG00000021048)	KLF15 (ENSECAG00000021092)	CFAP100 (ENSECAG00000021105)	ZXDC (ENSECAG00000026954)	UROC1 (ENSECAG00000021115)	CHST13 (ENSECAG00000032529)	ENSECAG00000056170	TXNRD3 (ENSECAG00000022090)	CHCHD6 (ENSECAG00000000017)	PLXNA1 (ENSECAG00000000022)	ENSECAG00000043184	ENSECAG00000037753 #19	ENSECAG00000034966	TPRA1 (ENSECAG00000016300) #21	MCM2 (ENSECAG00000019631) #22	PODXL2 (ENSECAG00000008843) #23	ABTB1 (ENSECAG00000012607) #24	MGLL (ENSECAG00000007658) #25	ENSECAG00000059312	KBTBD12 (ENSECAG00000011193) #26	SEC61A1 (ENSECAG00000013475) #27	RUVBL1 (ENSECAG00000000545) #29	EEFSEC (ENSECAG00000016565) #30	DNAJB8 (ENSECAG00000032630) #31	GATA2 (ENSECAG00000016768) #32	RPN1 (ENSECAG00000003030) #34	RAB7A (ENSECAG00000012559) #35	ENSECAG00000048657 #36	H1-10 (ENSECAG00000003332)	ENSECAG00000028617
Atlantogenata	ANCESTRAL SPECIES	34				ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00390000004778	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Afrotheria	ANCESTRAL SPECIES	32					ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e	ENSGT00390000014109	ENSGT00940000161980
Afrotheria_a	ANCESTRAL SPECIES	32					ENSGT00950000183042.b	ENSGT00940000160913	ENSGT00940000156977	ENSGT00940000153110.A	ENSGT00940000162216	ENSGT00390000015136	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e	ENSGT00390000014109	ENSGT00940000161980
Elephant	MODERN SPECIES	49	TRAK1 (ENSLAFG00000007369)	CTNNB1 (ENSLAFG00000018290)	RPL14 (ENSLAFG00000010371)	ENTPD3 (ENSLAFG00000017276)	SLC41A3 (ENSLAFG00000003959)	ALDH1L1 (ENSLAFG00000015488)	KLF15 (ENSLAFG00000011970)	CFAP100 (ENSLAFG00000010385)	ENSLAFG00000017934	UROC1 (ENSLAFG00000003586)	CHST13 (ENSLAFG00000030095)	TXNRD3 (ENSLAFG00000013303)	ENSLAFG00000009741	PLXNA1 (ENSLAFG00000030064)	TPRA1 (ENSLAFG00000010110) #21	MCM2 (ENSLAFG00000010112) #22	PODXL2 (ENSLAFG00000029373) #23	ABTB1 (ENSLAFG00000004651) #24	MGLL (ENSLAFG00000026229) #25	KBTBD12 (ENSLAFG00000014423) #26	SEC61A1 (ENSLAFG00000009106) #27	RUVBL1 (ENSLAFG00000017383) #29	EEFSEC (ENSLAFG00000001997) #30	GATA2 (ENSLAFG00000029178) #32	RPN1 (ENSLAFG00000000220) #34	RAB7A (ENSLAFG00000007945) #35	HMCES (ENSLAFG00000013939)	COPG1 (ENSLAFG00000013929)	CNBP (ENSLAFG00000002502)	ISY1 (ENSLAFG00000004015)	RAB43 (ENSLAFG00000023035)
Hyrax	MODERN SPECIES	9743															TPRA1 (ENSPCAG00000010339) #21	MCM2 (ENSPCAG00000010421) #22
Tenrec	MODERN SPECIES	6834																MCM2 (ENSETEG00000008231) #22	PODXL2 (ENSETEG00000008236) #23	ABTB1 (ENSETEG00000008238) #24
Xenarthra	ANCESTRAL SPECIES	861															ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26
Armadillo	MODERN SPECIES	1804															TPRA1 (ENSDNOG00000033901) #21	MCM2 (ENSDNOG00000015931) #22	PODXL2 (ENSDNOG00000047477) #23	ABTB1 (ENSDNOG00000042047) #24	MGLL (ENSDNOG00000012970) #25	KBTBD12 (ENSDNOG00000014429) #26
Sloth	MODERN SPECIES	6593																MCM2 (ENSCHOG00000004753) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Opossum	MODERN SPECIES	5	XPC (ENSMODG00000007289)	TMEM43 (ENSMODG00000007313)	ENSMODG00000007319	ENSMODG00000007369	UROC1 (ENSMODG00000007413)	ENSMODG00000007443	ENSMODG00000007452	ENSMODG00000051161	ALDH1L1 (ENSMODG00000007603)	SLC41A3 (ENSMODG00000007626)	CHST13 (ENSMODG00000007630)	TXNRD3 (ENSMODG00000007668)	ENSMODG00000028931	PLXNA1 (ENSMODG00000007833)	TPRA1 (ENSMODG00000007864) #21	MCM2 (ENSMODG00000007891) #22	PODXL2 (ENSMODG00000007905) #23	ABTB1 (ENSMODG00000007935) #24	MGLL (ENSMODG00000007949) #25	KBTBD12 (ENSMODG00000007955) #26	SEC61A1 (ENSMODG00000007982) #27	RUVBL1 (ENSMODG00000008018) #29	EEFSEC (ENSMODG00000008034) #30	GATA2 (ENSMODG00000008048) #32	RPN1 (ENSMODG00000008079) #34	RAB7A (ENSMODG00000008095) #35	H1-10 (ENSMODG00000008155)	ENSMODG00000018764	HMCES (ENSMODG00000008182)	COPG1 (ENSMODG00000008326)	CNBP (ENSMODG00000008362)
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT00390000000903.b	ENSGT01050000244850.A.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT00950000183041.A.e
Common wonbat	MODERN SPECIES	1012	CHCHD4 (ENSVURG00010015776)	ENSVURG00010015780	UROC1 (ENSVURG00010015797)	ENSVURG00010015824	ENSVURG00010016102	KLF15 (ENSVURG00010016133)	ALDH1L1 (ENSVURG00010016140)	SLC41A3 (ENSVURG00010016155)	CHST13 (ENSVURG00010016165)	TXNRD3 (ENSVURG00010016171)	ENSVURG00010016184	CHCHD6 (ENSVURG00010016196)	PLXNA1 (ENSVURG00010016213)	ENSVURG00010016248	TPRA1 (ENSVURG00010016259) #21	MCM2 (ENSVURG00010016271) #22	PODXL2 (ENSVURG00010016299) #23	ABTB1 (ENSVURG00010016361) #24	MGLL (ENSVURG00010016384) #25	KBTBD12 (ENSVURG00010016417) #26	SEC61A1 (ENSVURG00010016438) #27	RUVBL1 (ENSVURG00010016464) #29	EEFSEC (ENSVURG00010016493) #30	ENSVURG00010016566	DNAJB8 (ENSVURG00010016573) #31	GATA2 (ENSVURG00010016576) #32	RPN1 (ENSVURG00010016597) #34	RAB7A (ENSVURG00010016611) #35	ENSVURG00010016622	ENSVURG00010016629	HMCES (ENSVURG00010016642)
koala	MODERN SPECIES	10	TMEM43 (ENSPCIG00000007570)	ENSPCIG00000007567	ENSPCIG00000007553	UROC1 (ENSPCIG00000007560)	ENSPCIG00000007546	CFAP100 (ENSPCIG00000007541)	KLF15 (ENSPCIG00000007539)	ALDH1L1 (ENSPCIG00000007535)	SLC41A3 (ENSPCIG00000030893)	CHST13 (ENSPCIG00000031809)	TXNRD3 (ENSPCIG00000007513)	CHCHD6 (ENSPCIG00000007502)	ENSPCIG00000007509	PLXNA1 (ENSPCIG00000018273)	TPRA1 (ENSPCIG00000027112) #21	MCM2 (ENSPCIG00000027110) #22	PODXL2 (ENSPCIG00000027108) #23	ABTB1 (ENSPCIG00000027104) #24	MGLL (ENSPCIG00000027100) #25	KBTBD12 (ENSPCIG00000027094) #26	SEC61A1 (ENSPCIG00000030476) #27	RUVBL1 (ENSPCIG00000030477) #29	EEFSEC (ENSPCIG00000020494) #30	DNAJB8 (ENSPCIG00000000133) #31	GATA2 (ENSPCIG00000000175) #32	RPN1 (ENSPCIG00000000200) #34	RAB7A (ENSPCIG00000000237) #35	H1-10 (ENSPCIG00000000261)	ENSPCIG00000031362	HMCES (ENSPCIG00000000399)	COPG1 (ENSPCIG00000000412)
Wallaby	DUPLICATION
Wallaby	MODERN SPECIES	11875																ENSMEUG00000001879 #22
Wallaby	MODERN SPECIES	8835																ENSMEUG00000002241 #22
Tasmanian devil	MODERN SPECIES		XPC (ENSSHAG00000001194)	TMEM43 (ENSSHAG00000029957)	ENSSHAG00000021201	ENSSHAG00000003679	ENSSHAG00000004989	ENSSHAG00000006236	ENSSHAG00000006525	KLF15 (ENSSHAG00000007635)	ALDH1L1 (ENSSHAG00000009971)	ENSSHAG00000010624	ENSSHAG00000011415	ENSSHAG00000011983	ENSSHAG00000013122	PLXNA1 (ENSSHAG00000001587)	TPRA1 (ENSSHAG00000011029) #21	MCM2 (ENSSHAG00000009218) #22	PODXL2 (ENSSHAG00000011541) #23	ABTB1 (ENSSHAG00000011642) #24	MGLL (ENSSHAG00000022270) #25	KBTBD12 (ENSSHAG00000013098) #26	SEC61A1 (ENSSHAG00000013915) #27	RUVBL1 (ENSSHAG00000014141) #29	EEFSEC (ENSSHAG00000014760) #30	ENSSHAG00000015694	DNAJB8 (ENSSHAG00000015964) #31	GATA2 (ENSSHAG00000016131) #32	ENSSHAG00000023146 #34	ENSSHAG00000025451 #35	ENSSHAG00000026204	ENSSHAG00000026824	COPG1 (ENSSHAG00000016954)
Platypus	MODERN SPECIES	84	MUSTN1 (ENSOANG00000045634)	STIMATE (ENSOANG00000043186)	SFMBT1 (ENSOANG00000030105)	RFT1 (ENSOANG00000022204)	PRKCD (ENSOANG00000004136)	PFKFB4 (ENSOANG00000004303)	ENSOANG00000048750	ENSOANG00000041592	ENSOANG00000004300	ENSOANG00000039019	ENSOANG00000047095	PLXNB1 (ENSOANG00000004295)	PLXNA1 (ENSOANG00000013278)	ENSOANG00000021064	TPRA1 (ENSOANG00000003056) #21	MCM2 (ENSOANG00000007166) #22	PODXL2 (ENSOANG00000048912) #23	ABTB1 (ENSOANG00000000959) #24	MGLL (ENSOANG00000047996) #25	KBTBD12 (ENSOANG00000005842) #26	SEC61A1 (ENSOANG00000009106) #27	RUVBL1 (ENSOANG00000009107) #29	EEFSEC (ENSOANG00000009108) #30	ENSOANG00000036896	DNAJB8 (ENSOANG00000006706) #31	GATA2 (ENSOANG00000029173) #32	RPN1 (ENSOANG00000005779) #34	ENSOANG00000001856 #35	ENSOANG00000011250	HMCES (ENSOANG00000001855)	COPG1 (ENSOANG00000001854)
Sauria	ANCESTRAL SPECIES	13	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Archosauria	ANCESTRAL SPECIES	24	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Aves	ANCESTRAL SPECIES	29	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Neognathae	ANCESTRAL SPECIES	27	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.n #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b.n #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Common canary	MODERN SPECIES	15	ENSSCAG00000005009	UROC1 (ENSSCAG00000004991)	ENSSCAG00000004983	CHCHD4 (ENSSCAG00000004966)	TMEM43 (ENSSCAG00000004954)	XPC (ENSSCAG00000004942)	LSM3 (ENSSCAG00000004937)	SLC6A6 (ENSSCAG00000004898)	ENSSCAG00000004841	SLC41A3 (ENSSCAG00000004815)	CHST13 (ENSSCAG00000004805)	TXNRD3 (ENSSCAG00000004795)	PLXNA1 (ENSSCAG00000004775)	ENSSCAG00000004760	TPRA1 (ENSSCAG00000004751) #21	MCM2 (ENSSCAG00000004746) #22	PODXL2 (ENSSCAG00000004743) #23	ABTB1 (ENSSCAG00000004735) #24	MGLL (ENSSCAG00000004726) #25	KBTBD12 (ENSSCAG00000004717) #26	SEC61A1 (ENSSCAG00000004712) #27	RUVBL1 (ENSSCAG00000004689) #29	EEFSEC (ENSSCAG00000004678) #30	DNAJB8 (ENSSCAG00000004665) #31	GATA2 (ENSSCAG00000004658) #32	RPN1 (ENSSCAG00000004648) #34	ENSSCAG00000004642 #35	HMCES (ENSSCAG00000004636)	COPG1 (ENSSCAG00000004615)	ENSSCAG00000004608	ENSSCAG00000004604
Zebra finch	MODERN SPECIES	3	LSM3 (ENSTGUG00000008327)	XPC (ENSTGUG00000008307)	TMEM43 (ENSTGUG00000008280)	CHCHD4 (ENSTGUG00000008273)	ENSTGUG00000008258	UROC1 (ENSTGUG00000008227)	ENSTGUG00000018312	CFAP100 (ENSTGUG00000008217)	KLF15 (ENSTGUG00000008214)	SLC41A3 (ENSTGUG00000008199)	CHST13 (ENSTGUG00000008191)	TXNRD3 (ENSTGUG00000008152)	PLXNA1 (ENSTGUG00000008067)	ENSTGUG00000027600	TPRA1 (ENSTGUG00000008045) #21	MCM2 (ENSTGUG00000008031) #22	PODXL2 (ENSTGUG00000008022) #23	ABTB1 (ENSTGUG00000008002) #24	MGLL (ENSTGUG00000019506) #25	KBTBD12 (ENSTGUG00000007987) #26	SEC61A1 (ENSTGUG00000007959) #27	RUVBL1 (ENSTGUG00000007914) #29	EEFSEC (ENSTGUG00000007895) #30	DNAJB8 (ENSTGUG00000007894) #31	ENSTGUG00000021454	GATA2 (ENSTGUG00000007879) #32	RPN1 (ENSTGUG00000007857) #34	RAB7A (ENSTGUG00000007832) #35	H1-10 (ENSTGUG00000027546)	HMCES (ENSTGUG00000007825)	COPG1 (ENSTGUG00000007768)
Medium ground finch	MODERN SPECIES	20	LSM3 (ENSGFOG00000008878)	XPC (ENSGFOG00000008887)	TMEM43 (ENSGFOG00000008907)	CHCHD4 (ENSGFOG00000008917)	ENSGFOG00000008926	UROC1 (ENSGFOG00000008934)	ENSGFOG00000008953	CFAP100 (ENSGFOG00000008967)	KLF15 (ENSGFOG00000008995)	SLC41A3 (ENSGFOG00000008999)	CHST13 (ENSGFOG00000009013)	TXNRD3 (ENSGFOG00000009020)	PLXNA1 (ENSGFOG00000009131)	ENSGFOG00000010062	TPRA1 (ENSGFOG00000010078) #21	MCM2 (ENSGFOG00000010084) #22	PODXL2 (ENSGFOG00000010090) #23	ABTB1 (ENSGFOG00000010096) #24	MGLL (ENSGFOG00000010108) #25	KBTBD12 (ENSGFOG00000010114) #26	SEC61A1 (ENSGFOG00000010124) #27
Flycatcher	MODERN SPECIES	3	LSM3 (ENSFALG00000012644)	XPC (ENSFALG00000012642)	TMEM43 (ENSFALG00000012635)	CHCHD4 (ENSFALG00000028192)	ENSFALG00000012626	UROC1 (ENSFALG00000012619)	ENSFALG00000012609	CFAP100 (ENSFALG00000012603)	KLF15 (ENSFALG00000012601)	SLC41A3 (ENSFALG00000002080)	CHST13 (ENSFALG00000026839)	ENSFALG00000007847	ENSFALG00000007849	ENSFALG00000007851	TPRA1 (ENSFALG00000007855) #21	MCM2 (ENSFALG00000007857) #22	PODXL2 (ENSFALG00000007860) #23	ABTB1 (ENSFALG00000007868) #24	MGLL (ENSFALG00000007883) #25	KBTBD12 (ENSFALG00000007885) #26	SEC61A1 (ENSFALG00000007889) #27	RUVBL1 (ENSFALG00000007894) #29	ENSFALG00000024665 #30	EEFSEC (ENSFALG00000007901) #30	DNAJB8 (ENSFALG00000025661) #31	ENSFALG00000025652	GATA2 (ENSFALG00000007910) #32	RPN1 (ENSFALG00000007922) #34	RAB7A (ENSFALG00000007930) #35	H1-10 (ENSFALG00000025637)	ENSFALG00000014697
Great tit	MODERN SPECIES	3	LSM3 (ENSPMJG00000013238)	XPC (ENSPMJG00000012831)	TMEM43 (ENSPMJG00000012830)	CHCHD4 (ENSPMJG00000012829)	ENSPMJG00000012828	UROC1 (ENSPMJG00000012826)	ENSPMJG00000012825	CFAP100 (ENSPMJG00000012824)	KLF15 (ENSPMJG00000012823)	SLC41A3 (ENSPMJG00000012821)	CHST13 (ENSPMJG00000012820)	TXNRD3 (ENSPMJG00000012818)	PLXNA1 (ENSPMJG00000012816)	ENSPMJG00000012815	TPRA1 (ENSPMJG00000012814) #21	MCM2 (ENSPMJG00000012813) #22	PODXL2 (ENSPMJG00000012812) #23	ABTB1 (ENSPMJG00000012811) #24	MGLL (ENSPMJG00000012810) #25	KBTBD12 (ENSPMJG00000012809) #26	SEC61A1 (ENSPMJG00000012808) #27	RUVBL1 (ENSPMJG00000012806) #29	EEFSEC (ENSPMJG00000012805) #30	ENSPMJG00000012801	ENSPMJG00000012800	GATA2 (ENSPMJG00000012796) #32	RPN1 (ENSPMJG00000012793) #34	RAB7A (ENSPMJG00000012792) #35	H1-10 (ENSPMJG00000012791)	ENSPMJG00000012790	HMCES (ENSPMJG00000012789)
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Kakapo	MODERN SPECIES	3	XPC (ENSSHBG00005018333)	TMEM43 (ENSSHBG00005018350)	CHCHD4 (ENSSHBG00005018450)	ENSSHBG00005018453	UROC1 (ENSSHBG00005018461)	ENSSHBG00005018469	CFAP100 (ENSSHBG00005018478)	KLF15 (ENSSHBG00005018483)	SLC41A3 (ENSSHBG00005018487)	CHST13 (ENSSHBG00005018491)	TXNRD3 (ENSSHBG00005018495)	ENSSHBG00005018503	ENSSHBG00005018513	CHCHD6 (ENSSHBG00005018520)	TPRA1 (ENSSHBG00005018525) #21	MCM2 (ENSSHBG00005018527) #22	PODXL2 (ENSSHBG00005018531) #23	ABTB1 (ENSSHBG00005018535) #24	MGLL (ENSSHBG00005018539) #25	KBTBD12 (ENSSHBG00005018544) #26	SEC61A1 (ENSSHBG00005018547) #27	RUVBL1 (ENSSHBG00005018549) #29	EEFSEC (ENSSHBG00005018553) #30	ENSSHBG00005018558	GATA2 (ENSSHBG00005018562) #32	ENSSHBG00005018567	RPN1 (ENSSHBG00005018569) #34	RAB7A (ENSSHBG00005018574) #35	H1-10 (ENSSHBG00005018576)	ENSSHBG00005018580	HMCES (ENSSHBG00005018584)
Golden eagle	MODERN SPECIES	12	LSM3 (ENSACCG00020009737)	XPC (ENSACCG00020009715)	TMEM43 (ENSACCG00020009687)	CHCHD4 (ENSACCG00020009661)	ENSACCG00020009642	UROC1 (ENSACCG00020009609)	ENSACCG00020009560	ENSACCG00020009520	KLF15 (ENSACCG00020009511)	SLC41A3 (ENSACCG00020009488)	CHST13 (ENSACCG00020009455)	TXNRD3 (ENSACCG00020009439)	PLXNA1 (ENSACCG00020009421)	ENSACCG00020009394	TPRA1 (ENSACCG00020009367) #21	MCM2 (ENSACCG00020009318) #22	PODXL2 (ENSACCG00020009302) #23	ABTB1 (ENSACCG00020009282) #24	MGLL (ENSACCG00020009254) #25	KBTBD12 (ENSACCG00020009234) #26	SEC61A1 (ENSACCG00020009218) #27	RUVBL1 (ENSACCG00020009200) #29	EEFSEC (ENSACCG00020009179) #30	DNAJB8 (ENSACCG00020009160) #31	ENSACCG00020009146	GATA2 (ENSACCG00020009131) #32	RPN1 (ENSACCG00020009106) #34	RAB7A (ENSACCG00020009085) #35	H1-10 (ENSACCG00020009076)	ENSACCG00020009070	HMCES (ENSACCG00020009060)
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT01030000235385	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00940000153118.db.a.a.b.a.a.b.a.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Turkey	MODERN SPECIES	5	LSM3 (ENSMGAG00000007776)	XPC (ENSMGAG00000007750)	TMEM43 (ENSMGAG00000007717)	CHCHD4 (ENSMGAG00000021277)	ENSMGAG00000007685	UROC1 (ENSMGAG00000007651)	ENSMGAG00000007639	CFAP100 (ENSMGAG00000007620)	KLF15 (ENSMGAG00000007616)	SLC41A3 (ENSMGAG00000007576)	ENSMGAG00000007567	ENSMGAG00000007529	ENSMGAG00000007508	ENSMGAG00000007467	TPRA1 (ENSMGAG00000007445) #21	MCM2 (ENSMGAG00000007374) #22	PODXL2 (ENSMGAG00000007365) #23	ABTB1 (ENSMGAG00000007350) #24	MGLL (ENSMGAG00000007336) #25	KBTBD12 (ENSMGAG00000007327) #26	SEC61A1 (ENSMGAG00000007282) #27	RUVBL1 (ENSMGAG00000007246) #29	EEFSEC (ENSMGAG00000007243) #30	ENSMGAG00000019312	GATA2 (ENSMGAG00000016475) #32	RPN1 (ENSMGAG00000007231) #34	RAB7A (ENSMGAG00000007208) #35	ENSMGAG00000019081	ENSMGAG00000007189	ENSMGAG00000007126	ENSMGAG00000022810
Chicken	MODERN SPECIES	3	LSM3 (ENSGALG00010021258)	XPC (ENSGALG00010021252)	TMEM43 (ENSGALG00010021241)	CHCHD4 (ENSGALG00010021227)	NTN4L (ENSGALG00010021222)	UROC1 (ENSGALG00010021202)	ENSGALG00010021190	CFAP100 (ENSGALG00010021183)	KLF15 (ENSGALG00010021173)	SLC41A3 (ENSGALG00010021164)	CHST13 (ENSGALG00010021154)	TXNRD3 (ENSGALG00010021129)	PLXNA1 (ENSGALG00010022196)	ENSGALG00010028196	TPRA1 (ENSGALG00010028187) #21	MCM2 (ENSGALG00010028179) #22	ENSGALG00010028178 #23	ABTB1 (ENSGALG00010026982) #24	MGLL (ENSGALG00010026973) #25	KBTBD12 (ENSGALG00010028414) #26	SEC61A1 (ENSGALG00010026960) #27	RUVBL1 (ENSGALG00010026951) #29	EEFSEC (ENSGALG00010026943) #30	ENSGALG00010026925	GATA2 (ENSGALG00010026920) #32	RPN1 (ENSGALG00010027286) #34	RAB7A (ENSGALG00010027283) #35	ENSGALG00010027282	HMCES (ENSGALG00010027280)	H1-10 (ENSGALG00010027278)	COPG1 (ENSGALG00010027274)
Japanese quail	MODERN SPECIES	3	LSM3 (ENSCJPG00005016126)	XPC (ENSCJPG00005016125)	TMEM43 (ENSCJPG00005016123)	CHCHD4 (ENSCJPG00005016122)	ENSCJPG00005016121	UROC1 (ENSCJPG00005016013)	ENSCJPG00005016011	CFAP100 (ENSCJPG00005016005)	KLF15 (ENSCJPG00005016002)	SLC41A3 (ENSCJPG00005015992)	CHST13 (ENSCJPG00005015991)	TXNRD3 (ENSCJPG00005015989)	PLXNA1 (ENSCJPG00005013965)	ENSCJPG00005013964	TPRA1 (ENSCJPG00005013963) #21	MCM2 (ENSCJPG00005013962) #22	PODXL2 (ENSCJPG00005013961) #23	ABTB1 (ENSCJPG00005013960) #24	MGLL (ENSCJPG00005013959) #25	KBTBD12 (ENSCJPG00005013958) #26	SEC61A1 (ENSCJPG00005013957) #27	RUVBL1 (ENSCJPG00005013956) #29	EEFSEC (ENSCJPG00005013955) #30	DNAJB8 (ENSCJPG00005013954) #31	GATA2 (ENSCJPG00005013953) #32	RPN1 (ENSCJPG00005013951) #34	RAB7A (ENSCJPG00005013950) #35	H1-10 (ENSCJPG00005013949)	ENSCJPG00005013948	HMCES (ENSCJPG00005013947)	COPG1 (ENSCJPG00005013946)
Anatidae	ANCESTRAL SPECIES	48	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT01030000235510
Pink-footed goose	MODERN SPECIES	95	LSM3 (ENSABRG00000010342)	XPC (ENSABRG00000010322)	TMEM43 (ENSABRG00000010309)	CHCHD4 (ENSABRG00000010300)	ENSABRG00000010289	UROC1 (ENSABRG00000009894)	ENSABRG00000009849	CFAP100 (ENSABRG00000009839)	KLF15 (ENSABRG00000009826)	SLC41A3 (ENSABRG00000009804)	CHST13 (ENSABRG00000009793)	TXNRD3 (ENSABRG00000009756)	PLXNA1 (ENSABRG00000009694)	CHCHD6 (ENSABRG00000009683)	TPRA1 (ENSABRG00000009675) #21	MCM2 (ENSABRG00000009664) #22	PODXL2 (ENSABRG00000009659) #23	ABTB1 (ENSABRG00000009643) #24	MGLL (ENSABRG00000009629) #25	KBTBD12 (ENSABRG00000009611) #26	SEC61A1 (ENSABRG00000009603) #27	RUVBL1 (ENSABRG00000009587) #29	EEFSEC (ENSABRG00000009583) #30	DNAJB8 (ENSABRG00000009559) #31	GATA2 (ENSABRG00000009553) #32	RPN1 (ENSABRG00000009533) #34	RAB7A (ENSABRG00000009523) #35	H1-10 (ENSABRG00000009519)	HMCES (ENSABRG00000009512)	COPG1 (ENSABRG00000009484)	ENSABRG00000009474
Duck	MODERN SPECIES	4	CAND2 (ENSAPLG00000003936)	ENSAPLG00000004194	IFT122 (ENSAPLG00000004234)	RHO (ENSAPLG00000005189)	ENSAPLG00000005857	ENSAPLG00000024672	PLXND1 (ENSAPLG00000005859)	TMCC1 (ENSAPLG00000007270)	TRH (ENSAPLG00000007356)	RBSN (ENSAPLG00000007412)	MRPS25 (ENSAPLG00000029888)	NR2C2 (ENSAPLG00000007538)	FGD5 (ENSAPLG00000007924)	ENSAPLG00000004192	TPRA1 (ENSAPLG00000004211) #21	MCM2 (ENSAPLG00000004520) #22	PODXL2 (ENSAPLG00000005040) #23	ABTB1 (ENSAPLG00000005102) #24	MGLL (ENSAPLG00000005523) #25	KBTBD12 (ENSAPLG00000005631) #26	SEC61A1 (ENSAPLG00000005703) #27	RUVBL1 (ENSAPLG00000006088) #29	EEFSEC (ENSAPLG00000006745) #30	ENSAPLG00000029764 #32	RPN1 (ENSAPLG00000004411) #34	RAB7A (ENSAPLG00000004323) #35	ENSAPLG00000020965	HMCES (ENSAPLG00000004071)	COPG1 (ENSAPLG00000002838)	ENSAPLG00000017276	UQCRC1 (ENSAPLG00000001974)
African ostrich	MODERN SPECIES	416	TMEM43 (ENSSCUG00000007824)	CHCHD4 (ENSSCUG00000007826)	ENSSCUG00000007828	UROC1 (ENSSCUG00000007832)	ENSSCUG00000007837	CFAP100 (ENSSCUG00000007841)	KLF15 (ENSSCUG00000007844)	ENSSCUG00000007845	SLC41A3 (ENSSCUG00000007848)	CHST13 (ENSSCUG00000007851)	ENSSCUG00000007852	TXNRD3 (ENSSCUG00000007858)	PLXNA1 (ENSSCUG00000007866)	CHCHD6 (ENSSCUG00000007876)	TPRA1 (ENSSCUG00000007879) #21	MCM2 (ENSSCUG00000007882) #22	PODXL2 (ENSSCUG00000007886) #23	ABTB1 (ENSSCUG00000007888) #24	MGLL (ENSSCUG00000007890) #25	KBTBD12 (ENSSCUG00000007893) #26	SEC61A1 (ENSSCUG00000007895) #27	RUVBL1 (ENSSCUG00000007904) #29	EEFSEC (ENSSCUG00000007910) #30	ENSSCUG00000007912	ENSSCUG00000007914	ENSSCUG00000007917 #32	RPN1 (ENSSCUG00000007921) #34	RAB7A (ENSSCUG00000007924) #35	HMCES (ENSSCUG00000007926)	COPG1 (ENSSCUG00000007929)	ARL6IP5 (ENSSCUG00000007930)
Australian saltwater crocodile	MODERN SPECIES	37	LSM3 (ENSCPRG00005017591)	XPC (ENSCPRG00005017622)	TMEM43 (ENSCPRG00005017741)	CHCHD4 (ENSCPRG00005017745)	ENSCPRG00005017757	UROC1 (ENSCPRG00005017780)	ENSCPRG00005017797	CFAP100 (ENSCPRG00005017801)	KLF15 (ENSCPRG00005017808)	SLC41A3 (ENSCPRG00005017815)	CHST13 (ENSCPRG00005017822)	TXNRD3 (ENSCPRG00005017900)	PLXNA1 (ENSCPRG00005018072)	CHCHD6 (ENSCPRG00005018101)	TPRA1 (ENSCPRG00005018104) #21	MCM2 (ENSCPRG00005018109) #22	PODXL2 (ENSCPRG00005018114) #23	ABTB1 (ENSCPRG00005018116) #24	MGLL (ENSCPRG00005018119) #25	ENSCPRG00005018120	KBTBD12 (ENSCPRG00005018121) #26	SEC61A1 (ENSCPRG00005018123) #27	RUVBL1 (ENSCPRG00005018126) #29	EEFSEC (ENSCPRG00005018127) #30	ENSCPRG00005018129	GATA2 (ENSCPRG00005018131) #32	RPN1 (ENSCPRG00005018143) #34	RAB7A (ENSCPRG00005018178) #35	H1-10 (ENSCPRG00005018181)	HMCES (ENSCPRG00005018182)	COPG1 (ENSCPRG00005018187)
Cryptodira	ANCESTRAL SPECIES	17	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00960000189676	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385.a	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Emydidae	ANCESTRAL SPECIES	13	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b	ENSGT01030000235510
Three-toed box turtle	MODERN SPECIES	33	SLC6A6 (ENSTMTG00000020095)	XPC (ENSTMTG00000020128)	TMEM43 (ENSTMTG00000020161)	CHCHD4 (ENSTMTG00000020171)	ENSTMTG00000009407	UROC1 (ENSTMTG00000009635)	ENSTMTG00000009694	CFAP100 (ENSTMTG00000009787)	KLF15 (ENSTMTG00000010012)	SLC41A3 (ENSTMTG00000010025)	CHST13 (ENSTMTG00000010062)	TXNRD3 (ENSTMTG00000010077)	PLXNA1 (ENSTMTG00000010144)	CHCHD6 (ENSTMTG00000010204)	TPRA1 (ENSTMTG00000010240) #21	MCM2 (ENSTMTG00000010267) #22	PODXL2 (ENSTMTG00000010337) #23	ABTB1 (ENSTMTG00000010495) #24	MGLL (ENSTMTG00000010511) #25	KBTBD12 (ENSTMTG00000010545) #26	SEC61A1 (ENSTMTG00000010588) #27	RUVBL1 (ENSTMTG00000010618) #29	EEFSEC (ENSTMTG00000010647) #30	DNAJB8 (ENSTMTG00000010671) #31	ENSTMTG00000010687	GATA2 (ENSTMTG00000010699) #32	RPN1 (ENSTMTG00000010717) #34	RAB7A (ENSTMTG00000010739) #35	H1-10 (ENSTMTG00000010751)	ENSTMTG00000010760	HMCES (ENSTMTG00000010771)
painted turtle	MODERN SPECIES	699	LSM3 (ENSCPBG00000014531)	XPC (ENSCPBG00000014521)	TMEM43 (ENSCPBG00000014515)	CHCHD4 (ENSCPBG00000014513)	ENSCPBG00000014510	UROC1 (ENSCPBG00000014452)	ENSCPBG00000014442	CFAP100 (ENSCPBG00000014435)	KLF15 (ENSCPBG00000014431)	SLC41A3 (ENSCPBG00000014419)	CHST13 (ENSCPBG00000014414)	TXNRD3 (ENSCPBG00000014404)	PLXNA1 (ENSCPBG00000014392)	CHCHD6 (ENSCPBG00000014388)	TPRA1 (ENSCPBG00000014386) #21	MCM2 (ENSCPBG00000014382) #22	PODXL2 (ENSCPBG00000014381) #23	ABTB1 (ENSCPBG00000014379) #24	MGLL (ENSCPBG00000014377) #25	KBTBD12 (ENSCPBG00000014373) #26	SEC61A1 (ENSCPBG00000014367) #27	RUVBL1 (ENSCPBG00000014361) #29	EEFSEC (ENSCPBG00000014356) #30	DNAJB8 (ENSCPBG00000014352) #31	GATA2 (ENSCPBG00000014348) #32	RPN1 (ENSCPBG00000014345) #34	RAB7A (ENSCPBG00000014343) #35	H1-10 (ENSCPBG00000014342)	ENSCPBG00000014334	HMCES (ENSCPBG00000014333)	COPG1 (ENSCPBG00000014326)
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00990000205522	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT01030000235385.a	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT00390000018439	ENSGT00390000016313.a.b
Goode s thornscrub tortoise	MODERN SPECIES	21	ENSGEVG00005006079	UROC1 (ENSGEVG00005005863)	ENSGEVG00005005723	ENSGEVG00005005681	ENSGEVG00005005658	KLF15 (ENSGEVG00005005641)	SLC41A3 (ENSGEVG00005004799)	CHST13 (ENSGEVG00005004550)	TXNRD3 (ENSGEVG00005004510)	ENSGEVG00005004491	ENSGEVG00005004477	ENSGEVG00005004450	PLXNA1 (ENSGEVG00005004198)	CHCHD6 (ENSGEVG00005004106)	TPRA1 (ENSGEVG00005004075) #21	MCM2 (ENSGEVG00005004063) #22	ENSGEVG00005004046	PODXL2 (ENSGEVG00005004032) #23	ABTB1 (ENSGEVG00005020013) #24	MGLL (ENSGEVG00005020007) #25	KBTBD12 (ENSGEVG00005020003) #26	SEC61A1 (ENSGEVG00005019999) #27	RUVBL1 (ENSGEVG00005019989) #29	EEFSEC (ENSGEVG00005019984) #30	DNAJB8 (ENSGEVG00005019975) #31	GATA2 (ENSGEVG00005019972) #32	RPN1 (ENSGEVG00005019961) #34	RAB7A (ENSGEVG00005019958) #35	H1-10 (ENSGEVG00005019957)	ENSGEVG00005019953	HMCES (ENSGEVG00005019944)
Abingdon island giant tortoise	MODERN SPECIES	2223														ENSCABG00000008968	TPRA1 (ENSCABG00000008970) #21	MCM2 (ENSCABG00000008975) #22	PODXL2 (ENSCABG00000008978) #23	ABTB1 (ENSCABG00000008980) #24	MGLL (ENSCABG00000008982) #25	KBTBD12 (ENSCABG00000008985) #26	SEC61A1 (ENSCABG00000008986) #27	RUVBL1 (ENSCABG00000008989) #29	EEFSEC (ENSCABG00000008991) #30	ENSCABG00000008995	ENSCABG00000009033	SVBP (ENSCABG00000009037)
Chinese turtle	MODERN SPECIES	863												TXNRD3 (ENSPSIG00000007047)	PLXNA1 (ENSPSIG00000007550)	CHCHD6 (ENSPSIG00000010223)	TPRA1 (ENSPSIG00000010558) #21	MCM2 (ENSPSIG00000011042) #22	ENSPSIG00000012756 #23	ABTB1 (ENSPSIG00000012926) #24	MGLL (ENSPSIG00000012935) #25	KBTBD12 (ENSPSIG00000012977) #26	SEC61A1 (ENSPSIG00000014020) #27	RUVBL1 (ENSPSIG00000014837) #29	EEFSEC (ENSPSIG00000015135) #30	DNAJB8 (ENSPSIG00000000348) #31
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567 #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a	ENSGT00390000018439
Episquamata	ANCESTRAL SPECIES	4	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Laterata	ANCESTRAL SPECIES	1	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178.u	ENSGT00940000154420.C.h.a	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000011264	ENSPMRG00000011217	ENSPMRG00000011199	ENSPMRG00000011188	CFAP100 (ENSPMRG00000011175)	KLF15 (ENSPMRG00000011173)	SLC41A3 (ENSPMRG00000011167)	CHST13 (ENSPMRG00000011159)	TXNRD3 (ENSPMRG00000011148)	ENSPMRG00000011144	ENSPMRG00000011130	PLXNA1 (ENSPMRG00000011115)	ENSPMRG00000011112	ENSPMRG00000011105	TPRA1 (ENSPMRG00000011092) #21	MCM2 (ENSPMRG00000011085) #22	PODXL2 (ENSPMRG00000011080) #23	ABTB1 (ENSPMRG00000011070) #24	MGLL (ENSPMRG00000011055) #25	KBTBD12 (ENSPMRG00000011043) #26	SEC61A1 (ENSPMRG00000011031) #27	RUVBL1 (ENSPMRG00000011024) #29	EEFSEC (ENSPMRG00000011012) #30	DNAJB8 (ENSPMRG00000011002) #31	GATA2 (ENSPMRG00000010998) #32	RPN1 (ENSPMRG00000010992) #34	RAB7A (ENSPMRG00000010986) #35	ENSPMRG00000010983	H1-10 (ENSPMRG00000010980)	ENSPMRG00000010978	HMCES (ENSPMRG00000010972)
Argentine black and white tegu	MODERN SPECIES	8	CHCHD4 (ENSSMRG00000002521)	ENSSMRG00000002514	UROC1 (ENSSMRG00000001185)	ENSSMRG00000001157	CFAP100 (ENSSMRG00000001120)	KLF15 (ENSSMRG00000001106)	ENSSMRG00000001036	ENSSMRG00000001018	SLC41A3 (ENSSMRG00000000928)	CHST13 (ENSSMRG00000000915)	TXNRD3 (ENSSMRG00000000838)	ENSSMRG00000000832	PLXNA1 (ENSSMRG00000000739)	ENSSMRG00000000660	TPRA1 (ENSSMRG00000000546) #21	MCM2 (ENSSMRG00000000504) #22	PODXL2 (ENSSMRG00000000490) #23	ABTB1 (ENSSMRG00000000466) #24	MGLL (ENSSMRG00000000405) #25	KBTBD12 (ENSSMRG00000000387) #26	SEC61A1 (ENSSMRG00000000301) #27	RUVBL1 (ENSSMRG00000000262) #29	ENSSMRG00000000213 #31	ENSSMRG00000000203 #31	GATA2 (ENSSMRG00000000167) #32	ENSSMRG00000000054	RPN1 (ENSSMRG00000000016) #34	RAB7A (ENSSMRG00000021116) #35	H1-10 (ENSSMRG00000021115)	ENSSMRG00000021113	HMCES (ENSSMRG00000021112)
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00390000013951	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Elapidae	ANCESTRAL SPECIES	2	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00940000159738.b	ENSGT00390000000903.b	ENSGT00900000141932	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000010229	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00940000159738.b	ENSGT00900000141932	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000010229	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.A	ENSGT00940000156977	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00940000159738.b	ENSGT00900000141932	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000010229	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000162567.b #31	ENSGT00940000162567.a #31	ENSGT00940000156315 #32	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a
Eastern brown snake	MODERN SPECIES	3	TMEM43 (ENSPTXG00000003067)	CHCHD4 (ENSPTXG00000003068)	ENSPTXG00000003070	UROC1 (ENSPTXG00000003078)	ENSPTXG00000003081	CFAP100 (ENSPTXG00000003082)	KLF15 (ENSPTXG00000003151)	SLC41A3 (ENSPTXG00000003152)	CHST13 (ENSPTXG00000003156)	TXNRD3 (ENSPTXG00000003158)	PLXNA1 (ENSPTXG00000003183)	ENSPTXG00000003422	ENSPTXG00000003423	ENSPTXG00000003424	TPRA1 (ENSPTXG00000003426) #21	MCM2 (ENSPTXG00000003437) #22	PODXL2 (ENSPTXG00000003523) #23	C12orf4 (ENSPTXG00000003524)	ABTB1 (ENSPTXG00000003525) #24	MGLL (ENSPTXG00000003526) #25	KBTBD12 (ENSPTXG00000003528) #26	SEC61A1 (ENSPTXG00000003530) #27	RUVBL1 (ENSPTXG00000003532) #29	EEFSEC (ENSPTXG00000003533) #30	ENSPTXG00000003534 #31	ENSPTXG00000003536 #31	GATA2 (ENSPTXG00000003537) #32	RPN1 (ENSPTXG00000003538) #34	RAB7A (ENSPTXG00000003539) #35	H1-10 (ENSPTXG00000003540)	ENSPTXG00000003541
Mainland tiger snake	MODERN SPECIES	2	ENSNSUG00000001741	UROC1 (ENSNSUG00000001729)	ENSNSUG00000001726	ENSNSUG00000001724	ENSNSUG00000001721	KLF15 (ENSNSUG00000001719)	SLC41A3 (ENSNSUG00000001713)	CHST13 (ENSNSUG00000001711)	TXNRD3 (ENSNSUG00000001166)	ENSNSUG00000001155	PLXNA1 (ENSNSUG00000001028)	ENSNSUG00000001016	ENSNSUG00000001009	ENSNSUG00000001007	TPRA1 (ENSNSUG00000000429) #21	MCM2 (ENSNSUG00000000407) #22	PODXL2 (ENSNSUG00000000403) #23	C12orf4 (ENSNSUG00000000400)	ABTB1 (ENSNSUG00000000394) #24	MGLL (ENSNSUG00000000098) #25	KBTBD12 (ENSNSUG00000000057) #26	SEC61A1 (ENSNSUG00000000050) #27	RUVBL1 (ENSNSUG00000000007) #29	ENSNSUG00000020298 #30	EEFSEC (ENSNSUG00000020297) #30	GATA2 (ENSNSUG00000020295) #32	RPN1 (ENSNSUG00000020294) #34	RAB7A (ENSNSUG00000020293) #35	H1-10 (ENSNSUG00000020292)	ENSNSUG00000020291	HMCES (ENSNSUG00000020290)
Blue-lipped sea krait	MODERN SPECIES	10059																MCM2 (ENSLLTG00000009978) #22
Indian cobra	MODERN SPECIES	1	ENSNNAG00000018977	UROC1 (ENSNNAG00000018994)	ENSNNAG00000019015	ENSNNAG00000019018	KLF15 (ENSNNAG00000019020)	ENSNNAG00000019026	ENSNNAG00000019033	ENSNNAG00000019036	CHST13 (ENSNNAG00000019037)	TXNRD3 (ENSNNAG00000019039)	PLXNA1 (ENSNNAG00000019046)	ENSNNAG00000019063	ENSNNAG00000019066	ENSNNAG00000019068	TPRA1 (ENSNNAG00000019073) #21	MCM2 (ENSNNAG00000019079) #22	ENSNNAG00000019081	PODXL2 (ENSNNAG00000019083) #23	ENSNNAG00000019086	ABTB1 (ENSNNAG00000019087) #24	MGLL (ENSNNAG00000019090) #25	KBTBD12 (ENSNNAG00000019092) #26	SEC61A1 (ENSNNAG00000019096) #27	RUVBL1 (ENSNNAG00000019098) #29	EEFSEC (ENSNNAG00000019099) #30	ENSNNAG00000019101 #31	ENSNNAG00000000323 #31	GATA2 (ENSNNAG00000000343) #32	RPN1 (ENSNNAG00000000359) #34	ENSNNAG00000000396 #35	H2AX (ENSNNAG00000000431)
Lizard	MODERN SPECIES	1	CHST13 (ENSACAG00000040038)	ENSACAG00000014005	ENSACAG00000044615	ENSACAG00000035770	ENSACAG00000041924	ENSACAG00000043029	ENSACAG00000038087	ENSACAG00000042825	ENSACAG00000007544	ENSACAG00000040888	ENSACAG00000041051	ENSACAG00000034913	ENSACAG00000041400	ENSACAG00000007543	TPRA1 (ENSACAG00000007501) #21	MCM2 (ENSACAG00000007455) #22	PODXL2 (ENSACAG00000007435) #23	ABTB1 (ENSACAG00000007369) #24	ENSACAG00000036767	MGLL (ENSACAG00000007334) #25	KBTBD12 (ENSACAG00000007321) #26	SEC61A1 (ENSACAG00000007248) #27	RUVBL1 (ENSACAG00000007201) #29	ENSACAG00000043743	EEFSEC (ENSACAG00000028177) #30	ENSACAG00000045444	ENSACAG00000005807 #31	ENSACAG00000042631 #31	GATA2 (ENSACAG00000045513) #32	ENSACAG00000005837	RPN1 (ENSACAG00000005839) #34
tuatara	MODERN SPECIES	54													PLXNA1 (ENSSPUG00000003281)	ENSSPUG00000003914	TPRA1 (ENSSPUG00000003949) #21	MCM2 (ENSSPUG00000003968) #22	PODXL2 (ENSSPUG00000003994) #23	ABTB1 (ENSSPUG00000004030) #24	MGLL (ENSSPUG00000004059) #25	KBTBD12 (ENSSPUG00000004134) #26	SEC61A1 (ENSSPUG00000004146) #27	RUVBL1 (ENSSPUG00000004163) #29	ENSSPUG00000004177 #30	EEFSEC (ENSSPUG00000004191) #30	GATA2 (ENSSPUG00000004217) #32	ENSSPUG00000004245 #34	RAB7A (ENSSPUG00000004262) #35	ENSSPUG00000004303	HMCES (ENSSPUG00000004309)	COPG1 (ENSSPUG00000004325)	UQCRC1 (ENSSPUG00000004358)
Anura	ANCESTRAL SPECIES	36	ENSGT00390000005194	ENSGT00390000009671	ENSGT00390000013132	ENSGT00940000165132	ENSGT00390000015136	ENSGT00940000164258	ENSGT00940000153110.B	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00390000011364 #25	ENSGT00940000156836 #26	ENSGT00390000003721.d.a #27	ENSGT00940000153556.A #29	ENSGT00940000158170 #30	ENSGT00940000156315 #32	ENSGT00940000165491	ENSGT00390000009630 #34	ENSGT00940000155864.a.b #35	ENSGT00730000111536	ENSGT01020000230360.c.a	ENSGT00390000018439	ENSGT00390000016313.a.b
Leishan spiny toad	MODERN SPECIES	11	ENSLLEG00000019987	ENSLLEG00000019824	KLF15 (ENSLLEG00000019778)	ENSLLEG00000019703	ENSLLEG00000019683	ALDH1L1 (ENSLLEG00000019392)	ENSLLEG00000019256	CHST13 (ENSLLEG00000019171)	ENSLLEG00000019146	ENSLLEG00000018797	ENSLLEG00000018692	ENSLLEG00000018661	PLXNA1 (ENSLLEG00000017683)	ENSLLEG00000016948	ENSLLEG00000016883	MCM2 (ENSLLEG00000016598) #22	TPRA1 (ENSLLEG00000016357) #21	PODXL2 (ENSLLEG00000016236) #23	ENSLLEG00000016210	ENSLLEG00000016187	ABTB1 (ENSLLEG00000015915) #24	MGLL (ENSLLEG00000015856) #25	KBTBD12 (ENSLLEG00000015765) #26	ENSLLEG00000015724	SEC61A1 (ENSLLEG00000015234) #27	RUVBL1 (ENSLLEG00000015116) #29	ENSLLEG00000015066	EEFSEC (ENSLLEG00000014919) #30	GATA2 (ENSLLEG00000014722) #32	ENSLLEG00000014628 #34	ENSLLEG00000014534 #35
Frog	MODERN SPECIES	4	tmem43 (ENSXETG00000011540)	chchd4 (ENSXETG00000025311)	ENSXETG00000011542	uroc1 (ENSXETG00000011543)	zxdc (ENSXETG00000011547)	cfap100 (ENSXETG00000011548)	klf15 (ENSXETG00000011549)	aldh1l1 (ENSXETG00000011551)	slc41a3 (ENSXETG00000004787)	chst13 (ENSXETG00000004794)	ENSXETG00000042479	plxna1 (ENSXETG00000018635)	chchd6 (ENSXETG00000018684)	ENSXETG00000035971	tpra1 (ENSXETG00000036087) #21	mcm2 (ENSXETG00000002059) #22	podxl2 (ENSXETG00000039537) #23	abtb1 (ENSXETG00000002061) #24	mgll (ENSXETG00000002062) #25	kbtbd12 (ENSXETG00000031782) #26	sec61a1 (ENSXETG00000024743) #27	ruvbl1 (ENSXETG00000002064) #29	eefsec (ENSXETG00000002066) #30	gata2 (ENSXETG00000016171) #32	ENSXETG00000043594	rpn1 (ENSXETG00000016175) #34	rab7a (ENSXETG00000016176) #35	mgc69473 (ENSXETG00000042020)	ENSXETG00000047199	hmces (ENSXETG00000024746)	copg1 (ENSXETG00000016180)
Coelacanth	MODERN SPECIES	351													PLXNA1 (ENSLACG00000005715)	chchd6b (ENSLACG00000009466)	TPRA1 (ENSLACG00000010780) #21	MCM2 (ENSLACG00000011014) #22	PODXL2 (ENSLACG00000011229) #23	ABTB1 (ENSLACG00000011392) #24	MGLL (ENSLACG00000011685) #25	KBTBD12 (ENSLACG00000012517) #26	SEC61A1 (ENSLACG00000012749) #27	RUVBL1 (ENSLACG00000012962) #29	EEFSEC (ENSLACG00000013137) #30	GATA2 (ENSLACG00000015208) #32	ENSLACG00000015368	ENSLACG00000015636	RPN1 (ENSLACG00000015681) #34	RAB7A (ENSLACG00000015770) #35	h1-10 (ENSLACG00000015984)	h1-10 (ENSLACG00000022163)	ENSLACG00000016077
Actinopterygii	ANCESTRAL SPECIES	141	ENSGT00940000157877.a	ENSGT00940000165995	ENSGT00940000157446	ENSGT00990000203541.a.b.b	ENSGT00390000018852	ENSGT00940000159659	ENSGT00940000164258	ENSGT00940000156977	ENSGT00940000160913	ENSGT00950000183042.b	ENSGT00940000161154	ENSGT00940000159178	ENSGT01050000244850.A.b	ENSGT00390000000903.b	ENSGT00390000016807 #21	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890
Reedfish	MODERN SPECIES	9	nos1 (ENSECRG00000020549)	KSR2 (ENSECRG00000020476)	rfc5 (ENSECRG00000020441)	wsb2 (ENSECRG00000020430)	ENSECRG00000020414	PEBP1 (ENSECRG00000020405)	ENSECRG00000020398	TAOK3 (ENSECRG00000020378)	suds3 (ENSECRG00000020335)	ENSECRG00000020319	ENSECRG00000020304	ENSECRG00000020290	ENSECRG00000020235	ENSECRG00000020180	tpra1 (ENSECRG00000020116) #21	mcm2 (ENSECRG00000020065) #22	zgc:171566 (ENSECRG00000020032)	LSM3 (ENSECRG00000020010)	slc6a6b (ENSECRG00000019983)	GRIP2 (ENSECRG00000018586)	sec13 (ENSECRG00000018488)	cand2 (ENSECRG00000018469)	RPL32 (ENSECRG00000018447)	RFT1 (ENSECRG00000018406)	SFMBT1 (ENSECRG00000018351)	stimate (ENSECRG00000018256)	mustn1b (ENSECRG00000018218)	itih3a.1 (ENSECRG00000018012)	ENSECRG00000017513	ENSECRG00000022824	qrich1 (ENSECRG00000022821)
Neopterygii	ANCESTRAL SPECIES	70														ENSGT00940000166028	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000017131 #24	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873	ENSGT00440000038003	ENSGT00940000165085	ENSGT00390000005874	ENSGT00940000155514	ENSGT00390000007160.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000159891	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT00390000002190	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000166028	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873	ENSGT00440000038003	ENSGT00940000165085	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000007160.a.a	ENSGT00940000160561
Clupeocephala	ANCESTRAL SPECIES	7	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT00390000002190	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000007160.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000159891	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k	ENSGT00390000002190	ENSGT01090000260174	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00440000038003	ENSGT00940000165085	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a
Acanthomorphata	ANCESTRAL SPECIES	71	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a	ENSGT00390000018016
Euacanthomorphacea	ANCESTRAL SPECIES	72										ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Pinecone sodierfish	MODERN SPECIES	19	or90a1 (ENSMMDG00005005788)	ENSMMDG00005005793	ENSMMDG00005005801	KCNS1 (ENSMMDG00005005813)	ENSMMDG00005005878	cox6c (ENSMMDG00005006156)	ANGPT4 (ENSMMDG00005006167)	ENSMMDG00005006503	cand2 (ENSMMDG00005006506)	sec13 (ENSMMDG00005006511)	BRCC3 (ENSMMDG00005006518)	ENSMMDG00005006519	rbl1 (ENSMMDG00005006525)	psmf1 (ENSMMDG00005006531)	pigu (ENSMMDG00005006532)	mcm2 (ENSMMDG00005006566) #22	ENSMMDG00005009354 #23	blcap (ENSMMDG00005009358)	ripor3 (ENSMMDG00005009362)	CHD6 (ENSMMDG00005009374)	rspo4 (ENSMMDG00005009389)	PTPRT (ENSMMDG00005009429)	zgc:171566 (ENSMMDG00005010560)	GRIP2 (ENSMMDG00005010568)	slc6a6b (ENSMMDG00005010607)	LSM3 (ENSMMDG00005012308)	ENSMMDG00005012311	RIMS4 (ENSMMDG00005012312)	ENSMMDG00005012315	PIK3C2B (ENSMMDG00005012343)	ENSMMDG00005014385
Percomorphaceae	ANCESTRAL SPECIES	33	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000153649.A	ENSGT01040000241001	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b
Tiger tail seahorse	MODERN SPECIES	513															prickle2b (ENSHCOG00000011912)	mcm2 (ENSHCOG00000011966) #22	zgc:171566 (ENSHCOG00000011992)	PTPRT (ENSHCOG00000012064)	rspo4 (ENSHCOG00000012080)	ENSHCOG00000012108	ripor3 (ENSHCOG00000012120)	blcap (ENSHCOG00000012133)	rbl1 (ENSHCOG00000012180)	psmf1 (ENSHCOG00000012194)	pigu (ENSHCOG00000012234)	cyc1 (ENSHCOG00000012243)	raly (ENSHCOG00000012268)	ENSHCOG00000012290	ahcy (ENSHCOG00000012330)	ENSHCOG00000012340	ENSHCOG00000012352
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Atherinomorphae	ANCESTRAL SPECIES	2												ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Oryzias	ANCESTRAL SPECIES	59	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986
Oryzias_a	ANCESTRAL SPECIES	94	ENSGT00940000160254	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986
Chinese medaka	MODERN SPECIES	127																mcm2 (ENSOSIG00000019558) #22	ENSOSIG00000019554 #23
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000029294	oser1 (ENSORLG00000025333)	manf (ENSORLG00000028270)	rbm15b (ENSORLG00000025754)	pcbp4 (ENSORLG00000003061)	foxp1b (ENSORLG00000003081)	zgc:113054 (ENSORLG00000003095)	ENSORLG00000023023	ENSORLG00000029419	mitfa (ENSORLG00000003123)	ENSORLG00000022242	ENSORLG00000022697	ENSORLG00000003143	trnt1 (ENSORLG00000003165)	ENSORLG00000003170	mcm2 (ENSORLG00000003191) #22	ENSORLG00000025961 #23	blcap (ENSORLG00000026381)	ENSORLG00000003227	ENSORLG00000003286	ENSORLG00000026691	itr1 (ENSORLG00000003297)	cav4a (ENSORLG00000027005)	rrp9 (ENSORLG00000003315)	grm2b (ENSORLG00000003328)	TEX264 (ENSORLG00000027237)	brk1 (ENSORLG00000022796)	rbm5 (ENSORLG00000003369)	ENSORLG00000003445	gnai2b (ENSORLG00000022563)	inka1b (ENSORLG00000003453)
Oryzias_b	ANCESTRAL SPECIES	65	ENSGT00390000018118	ENSGT00940000160455	ENSGT00940000176933	ENSGT00940000160663	ENSGT00390000018547	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00940000165920.b	ENSGT00940000178117	ENSGT00940000165309.g	ENSGT00940000156326.a.b	ENSGT00940000179841	ENSGT00390000009678	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986
Indian medaka	MODERN SPECIES	8	uqcc1 (ENSOMEG00000000077)	GDF5 (ENSOMEG00000003585)	ENSOMEG00000003580	ENSOMEG00000003570	oser1 (ENSOMEG00000003557)	manf (ENSOMEG00000003547)	rbm15b (ENSOMEG00000000801)	pcbp4 (ENSOMEG00000003516)	foxp1b (ENSOMEG00000003447)	ENSOMEG00000003410	zgc:113054 (ENSOMEG00000003392)	mitfa (ENSOMEG00000003364)	trnt1 (ENSOMEG00000003331)	ENSOMEG00000003313	lmcd1 (ENSOMEG00000003298)	mcm2 (ENSOMEG00000003267) #22	blcap (ENSOMEG00000003240)	ENSOMEG00000003225	ENSOMEG00000003185	ENSOMEG00000003166	ENSOMEG00000003153	pcgf1 (ENSOMEG00000003141)	lbx2 (ENSOMEG00000003113)	nanos1 (ENSOMEG00000003107)	LIMCH1 (ENSOMEG00000003079)	phox2bb (ENSOMEG00000003025)	tmem33 (ENSOMEG00000003014)	bbs7 (ENSOMEG00000002989)	ccna2 (ENSOMEG00000002951)	ENSOMEG00000002942	anxa5a (ENSOMEG00000002931)
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b.r	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c.n
Aplocheiloidei	ANCESTRAL SPECIES	10										ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c.m.b
Mangrove rivulus	MODERN SPECIES	121								pdhb (ENSKMAG00000013726)	pxk (ENSKMAG00000013757)	HTD2 (ENSKMAG00000013829)	ENSKMAG00000013843	ENSKMAG00000013863	ENSKMAG00000013871	ABHD6 (ENSKMAG00000013902)	lmcd1 (ENSKMAG00000013944)	mcm2 (ENSKMAG00000013981) #22	ENSKMAG00000014083 #23	blcap (ENSKMAG00000014112)	ENSKMAG00000014128	ripor3 (ENSKMAG00000014169)	ENSKMAG00000014242	ENSKMAG00000014262	RSPO4 (ENSKMAG00000014287)	PTPRT (ENSKMAG00000014489)	zgc:171566 (ENSKMAG00000014850)	GRIP2 (ENSKMAG00000014940)	slc6a6b (ENSKMAG00000015136)	LSM3 (ENSKMAG00000015182)	ENSKMAG00000015236	RIMS4 (ENSKMAG00000015252)	YWHAB (ENSKMAG00000015283)
Turquoise killifish	MODERN SPECIES	1619	MAGI3 (ENSNFUG00015010562)	ENSNFUG00015010547	ENSNFUG00015010540	Nfu_g_1_020813 (ENSNFUG00015010528)	ENSNFUG00015010522	PLXNA2 (ENSNFUG00015010192)	ENSNFUG00015010096	ENSNFUG00015010075	ora1 (ENSNFUG00015010063)	phtf1 (ENSNFUG00015010047)	PFKFB2 (ENSNFUG00015009513)	yod1 (ENSNFUG00015009446)	zgc:158258 (ENSNFUG00015009431)	ENSNFUG00015009416	LMCD1 (ENSNFUG00015009398)	MCM2 (ENSNFUG00015009278) #22	PODXL2 (ENSNFUG00015009251) #23	BLCAP (ENSNFUG00015009235)	FAM65C (ENSNFUG00015021815)	CHD6 (ENSNFUG00015021686)	rspo4 (ENSNFUG00015021679)	BX927253.1 (ENSNFUG00015021674)	PTPRT (ENSNFUG00015017179)	ENSNFUG00015017042	Nfu_g_1_021471 (ENSNFUG00015017037)	GRIP2 (ENSNFUG00015015885)	SLC6A6A (ENSNFUG00015015269)	LSM3 (ENSNFUG00015015161)	Nfu_g_1_021249 (ENSNFUG00015014946)	RBM12 (ENSNFUG00015014576)	cpne1 (ENSNFUG00015012394)
Cyprinodontoidei	ANCESTRAL SPECIES	77														ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Poeciliinae	ANCESTRAL SPECIES	31									ENSGT00390000006658.a.a	ENSGT00940000157802	ENSGT00390000012411	ENSGT00530000063735.a.b	ENSGT00940000158385	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c.n
Poecilia	ANCESTRAL SPECIES	25	ENSGT00940000156550.a	ENSGT00550000074784.b.f	ENSGT00940000174941	ENSGT00940000158156.a	ENSGT00940000157205	ENSGT00940000177776	ENSGT00940000158909	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.a.a.b.a	ENSGT00390000006658.a.a	ENSGT00940000157802	ENSGT00390000012411	ENSGT00530000063735.a.b.g	ENSGT00940000158385	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c.n
NAME_6	ANCESTRAL SPECIES	262													ENSGT00940000158385	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00390000009571.a.b.a.b.h.b	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Sailfin molly	MODERN SPECIES	292														ENSPLAG00000002999	lmcd1 (ENSPLAG00000003006)	mcm2 (ENSPLAG00000003032) #22	ENSPLAG00000003047 #23	blcap (ENSPLAG00000003055)	ripor3 (ENSPLAG00000003083)	CHD6 (ENSPLAG00000003128)	rspo4 (ENSPLAG00000003154)	ENSPLAG00000003165
Amazon molly	MODERN SPECIES	357													arhgef3 (ENSPFOG00000011936)	ENSPFOG00000020645	lmcd1 (ENSPFOG00000011850)	mcm2 (ENSPFOG00000011685) #22	ENSPFOG00000011671 #23	blcap (ENSPFOG00000020644)	ripor3 (ENSPFOG00000011492)	ENSPFOG00000010939	rspo4 (ENSPFOG00000010891)	ENSPFOG00000010869	PTPRT (ENSPFOG00000009123)	zgc:171566 (ENSPFOG00000009003)	GRIP2 (ENSPFOG00000008525)	slc6a6b (ENSPFOG00000008415)	LSM3 (ENSPFOG00000008372)	ENSPFOG00000008363	RIMS4 (ENSPFOG00000008320)	YWHAB (ENSPFOG00000008238)	tomm34 (ENSPFOG00000008162)
Guppy	MODERN SPECIES	457	ASB14 (ENSPREG00000022867)	ENSPREG00000022860	rps23 (ENSPREG00000022850)	ENSPREG00000022841	ENSPREG00000022835	pde12 (ENSPREG00000022831)	ENSPREG00000022824	gmppb (ENSPREG00000022817)	ENSPREG00000022808	osgn1 (ENSPREG00000022801)	IP6K1 (ENSPREG00000022796)	ENSPREG00000022783	arhgef3 (ENSPREG00000022771)	ENSPREG00000022767	lmcd1 (ENSPREG00000022762)	mcm2 (ENSPREG00000022748) #22	ENSPREG00000022737 #23	blcap (ENSPREG00000022730)	ripor3 (ENSPREG00000022691)	CHD6 (ENSPREG00000022653)	rspo4 (ENSPREG00000022639)	ENSPREG00000022625	ENSPREG00000022619	PTPRT (ENSPREG00000022602)	zgc:171566 (ENSPREG00000022580)	GRIP2 (ENSPREG00000022527)	slc6a6b (ENSPREG00000022491)	LSM3 (ENSPREG00000022485)	ENSPREG00000022474	RIMS4 (ENSPREG00000022461)	ENSPREG00000022423
Platyfish	MODERN SPECIES	12	il17rd (ENSXMAG00000008778)	pxk (ENSXMAG00000008793)	pdhb (ENSXMAG00000008822)	ENSXMAG00000025314	ENSXMAG00000026268	ccdc71 (ENSXMAG00000020114)	stab1 (ENSXMAG00000021784)	ENSXMAG00000029242	NISCH (ENSXMAG00000000318)	ENSXMAG00000023453	hgh1 (ENSXMAG00000000313)	zgc:153675 (ENSXMAG00000022860)	arhgef3 (ENSXMAG00000025917)	ENSXMAG00000022108	lmcd1 (ENSXMAG00000000309)	mcm2 (ENSXMAG00000000302) #22	ENSXMAG00000021779 #23	blcap (ENSXMAG00000019463)	ripor3 (ENSXMAG00000012157)	IP6K1 (ENSXMAG00000012185)	osgepl1 (ENSXMAG00000022739)	ENSXMAG00000026386	ENSXMAG00000020957	rspo4 (ENSXMAG00000000286)	PTPRT (ENSXMAG00000000264)	zgc:171566 (ENSXMAG00000021526)	GRIP2 (ENSXMAG00000009165)	slc6a6b (ENSXMAG00000009153)	LSM3 (ENSXMAG00000009151)	ENSXMAG00000009150	RIMS4 (ENSXMAG00000009148)
NAME_4	ANCESTRAL SPECIES	411											ENSGT00390000012411	ENSGT00940000157802	ENSGT00390000006658.a.a	ENSGT00970000193381.a.b.a.b.a.b.a.b.j.b	ENSGT00940000158813	ENSGT01050000244824.F #22
Sheepshead minnow	MODERN SPECIES	1525												IP6K1 (ENSCVAG00000019424)	osgn1 (ENSCVAG00000019454)	ENSCVAG00000019473	ENSCVAG00000019477	mcm2 (ENSCVAG00000019493) #22	ENSCVAG00000019502	ENSCVAG00000019515	ENSCVAG00000019521
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b.cc	ENSGT01050000244866.D.a.c.h
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00940000157928	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b.cc	ENSGT01050000244866.D.a.c.h
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00390000010053	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b.cc	ENSGT01050000244866.D.a.c.h
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00390000010053	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b.cc	ENSGT01050000244866.D.a.c.h
P. nyererei	MODERN SPECIES	541	ippk (ENSPNYG00000022148)	rbbp5 (ENSPNYG00000022173)	zgc:153675 (ENSPNYG00000022210)	hgh1 (ENSPNYG00000022220)	ENSPNYG00000022235	ENSPNYG00000022245	stab1 (ENSPNYG00000022293)	ENSPNYG00000022399	ccdc71 (ENSPNYG00000022406)	ENSPNYG00000022412	pdhb (ENSPNYG00000022423)	pxk (ENSPNYG00000022441)	rpp14 (ENSPNYG00000022453)	ABHD6 (ENSPNYG00000022459)	lmcd1 (ENSPNYG00000022464)	mcm2 (ENSPNYG00000022469) #22	blcap (ENSPNYG00000022481)	ripor3 (ENSPNYG00000022490)	ENSPNYG00000022501	CHD6 (ENSPNYG00000022516)	ENSPNYG00000022566
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00390000010053	ENSGT00530000064100	ENSGT00390000013899.a.b	ENSGT00390000016546	ENSGT00620000089227	ENSGT00940000156494	ENSGT00970000193381.a.b.a.b.a.b.a.a.a.a.b.b	ENSGT00940000157928	ENSGT00940000155306.a	ENSGT00940000157869.f	ENSGT00940000155146	ENSGT00390000017669	ENSGT00510000048121	ENSGT00510000047225.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00460000041731.C.c.b.b	ENSGT00940000164996.A.d.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00940000169847	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934
Eastern happy	MODERN SPECIES	17	ENSACLG00000004771	ENSACLG00000004780	ENSACLG00000004813	stab1 (ENSACLG00000005183)	ENSACLG00000005423	ENSACLG00000005435	ccdc71 (ENSACLG00000005444)	ENSACLG00000005447	ENSACLG00000005454	ENSACLG00000005458	pdhb (ENSACLG00000005893)	pxk (ENSACLG00000005918)	rpp14 (ENSACLG00000006157)	ABHD6 (ENSACLG00000006186)	lmcd1 (ENSACLG00000006217)	mcm2 (ENSACLG00000006226) #22	ENSACLG00000006270	blcap (ENSACLG00000006274)	ripor3 (ENSACLG00000006280)	ENSACLG00000006311	ENSACLG00000006337	PTPRT (ENSACLG00000006357)	ENSACLG00000006511	ENSACLG00000006515	zgc:171566 (ENSACLG00000006527)	ENSACLG00000007039	GRIP2 (ENSACLG00000007045)	ENSACLG00000007073	slc6a6b (ENSACLG00000007075)	ENSACLG00000007108	ENSACLG00000007131
Zebra mbuna	MODERN SPECIES	1108	ippk (ENSMZEG00005017051)	rbbp5 (ENSMZEG00005017040)	zgc:153675 (ENSMZEG00005017033)	hgh1 (ENSMZEG00005017028)	ENSMZEG00005017023	ENSMZEG00005017005	ENSMZEG00005016998	stab1 (ENSMZEG00005016959)	ccdc71 (ENSMZEG00005016949)	ENSMZEG00005016941	pdhb (ENSMZEG00005016928)	pxk (ENSMZEG00005016864)	rpp14 (ENSMZEG00005016843)	ABHD6 (ENSMZEG00005016838)	lmcd1 (ENSMZEG00005016837)	mcm2 (ENSMZEG00005016827) #22	ENSMZEG00005016818 #23	blcap (ENSMZEG00005016817)	ENSMZEG00005016812	ripor3 (ENSMZEG00005016783)	ENSMZEG00005016756	ENSMZEG00005016753	ENSMZEG00005016748	PTPRT (ENSMZEG00005016737)	ENSMZEG00005016710	ENSMZEG00005016708	zgc:171566 (ENSMZEG00005016703)	GRIP2 (ENSMZEG00005016699)	slc6a6b (ENSMZEG00005016690)	ENSMZEG00005016687	LSM3 (ENSMZEG00005016682)
Burton s mouthbrooder	MODERN SPECIES	621								ENSHBUG00000014277	ccdc71 (ENSHBUG00000014283)	ENSHBUG00000014330	pdhb (ENSHBUG00000014341)	pxk (ENSHBUG00000014359)	rpp14 (ENSHBUG00000014383)	ABHD6 (ENSHBUG00000014425)	lmcd1 (ENSHBUG00000014434)	mcm2 (ENSHBUG00000014551) #22	ENSHBUG00000014578 #23	blcap (ENSHBUG00000014584)	ripor3 (ENSHBUG00000014634)	CHD6 (ENSHBUG00000014701)	ENSHBUG00000014722
Lyretail cichlid	MODERN SPECIES	294	rbbp5 (ENSNBRG00000012966)	zgc:153675 (ENSNBRG00000013008)	hgh1 (ENSNBRG00000013015)	ENSNBRG00000013056	ENSNBRG00000013074	stab1 (ENSNBRG00000013159)	ENSNBRG00000013419	ccdc71 (ENSNBRG00000013429)	ENSNBRG00000013434	pdhb (ENSNBRG00000013454)	pxk (ENSNBRG00000013498)	HTD2 (ENSNBRG00000013603)	rpp14 (ENSNBRG00000013614)	ABHD6 (ENSNBRG00000013641)	lmcd1 (ENSNBRG00000013672)	mcm2 (ENSNBRG00000013686) #22	blcap (ENSNBRG00000013740)	ripor3 (ENSNBRG00000013748)	CHD6 (ENSNBRG00000013839)	rspo4 (ENSNBRG00000014063)	PTPRT (ENSNBRG00000014099)	zgc:171566 (ENSNBRG00000014172)	GRIP2 (ENSNBRG00000014239)	slc6a6b (ENSNBRG00000014311)	LSM3 (ENSNBRG00000014318)	ENSNBRG00000014351	RIMS4 (ENSNBRG00000014369)	YWHAB (ENSNBRG00000014393)	tomm34 (ENSNBRG00000014430)	ENSNBRG00000014475	ENSNBRG00000014544
Nile tilapia	MODERN SPECIES	17	rbbp5 (ENSONIG00000000468)	ENSONIG00000037729	zgc:153675 (ENSONIG00000000466)	hgh1 (ENSONIG00000000462)	NISCH (ENSONIG00000000457)	stab1 (ENSONIG00000000426)	ENSONIG00000031297	ccdc71 (ENSONIG00000038353)	ENSONIG00000000422	pdhb (ENSONIG00000000416)	pxk (ENSONIG00000027396)	HTD2 (ENSONIG00000020731)	rpp14 (ENSONIG00000031687)	ABHD6 (ENSONIG00000000411)	lmcd1 (ENSONIG00000000408)	mcm2 (ENSONIG00000000404) #22	ENSONIG00000032385 #23	blcap (ENSONIG00000035245)	ripor3 (ENSONIG00000000401)	CHD6 (ENSONIG00000000393)	ENSONIG00000000392	PTPRT (ENSONIG00000000384)	zgc:171566 (ENSONIG00000000380)	GRIP2 (ENSONIG00000000373)	slc6a6b (ENSONIG00000000371)	LSM3 (ENSONIG00000000370)	ENSONIG00000000367	rims4 (ENSONIG00000036454)	YWHAB (ENSONIG00000017317)	tomm34 (ENSONIG00000000360)	ENSONIG00000035273
Midas cichlid	MODERN SPECIES	945	ENSACIG00000010510	zgc:153675 (ENSACIG00000010502)	hgh1 (ENSACIG00000010475)	ENSACIG00000010468	ENSACIG00000010435	ENSACIG00000010421	stab1 (ENSACIG00000010316)	ccdc71 (ENSACIG00000010298)	ENSACIG00000010285	pdhb (ENSACIG00000010107)	pxk (ENSACIG00000009910)	HTD2 (ENSACIG00000009881)	rpp14 (ENSACIG00000009835)	ABHD6 (ENSACIG00000009756)	lmcd1 (ENSACIG00000009734)	mcm2 (ENSACIG00000009681) #22	blcap (ENSACIG00000009676)	ripor3 (ENSACIG00000009616)	ENSACIG00000009577	ENSACIG00000009564
Pomacentridae	ANCESTRAL SPECIES	139	ENSGT00950000183117.a.b.b	ENSGT01030000234578.B.b.b	ENSGT00390000014270	ENSGT00940000155740	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000158813	ENSGT01050000244824.F #22
Pomacentridae_A	ANCESTRAL SPECIES	141	ENSGT00950000183117.a.b.b	ENSGT01030000234578.B.b.b	ENSGT00390000014270	ENSGT00940000155740	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00940000158986	ENSGT00940000153717.a.b	ENSGT00390000014105	ENSGT00730000111323 #23
Amphiprion	ANCESTRAL SPECIES	174	ENSGT00950000183117.a.b.b	ENSGT01030000234578.B.b.b	ENSGT00390000014270	ENSGT00940000155740	ENSGT00940000162210	ENSGT00940000160586	ENSGT00940000165482	ENSGT00940000166842	ENSGT00940000163873.c.b	ENSGT00940000160613	ENSGT00950000182991.A.a.c.a.a	ENSGT00950000182986.a.a	ENSGT00940000166455	ENSGT00950000183062.a.b.a	ENSGT00940000158813	ENSGT01050000244824.F #22	ENSGT00940000158986	ENSGT00940000153717.a.b	ENSGT00390000014105	ENSGT00730000111323 #23	ENSGT00950000183127.c.b.d.a.a.a.b
Orange clownfish	MODERN SPECIES	20	cpne1 (ENSAPEG00000021373)	ENSAPEG00000021442	ENSAPEG00000021563	ENSAPEG00000021571	ENSAPEG00000021584	st3gal8 (ENSAPEG00000021608)	ENSAPEG00000021628	ENSAPEG00000021647	ENSAPEG00000021663	REM1 (ENSAPEG00000021680)	pnp4a (ENSAPEG00000021731)	trib3 (ENSAPEG00000022071)	ENSAPEG00000022086	ENSAPEG00000022101	lmcd1 (ENSAPEG00000022134)	mcm2 (ENSAPEG00000022154) #22	ENSAPEG00000022241	ripor3 (ENSAPEG00000022278)	blcap (ENSAPEG00000022320)	ENSAPEG00000022346	pck1 (ENSAPEG00000022362)	PMEPA1 (ENSAPEG00000022380)	ENSAPEG00000022402	ENSAPEG00000022462	ENSAPEG00000022471	ENSAPEG00000022505	ENSAPEG00000022518	osgn1 (ENSAPEG00000022534)	ccdc51 (ENSAPEG00000022548)	tma7 (ENSAPEG00000022566)	dnase1l4.1 (ENSAPEG00000022607)
Clown anemonefish	MODERN SPECIES	2965															lmcd1 (ENSAOCG00000024206)	mcm2 (ENSAOCG00000024178) #22
Spiny chromis	MODERN SPECIES	616														lmcd1 (ENSAPOG00000013589)	ENSAPOG00000013609	mcm2 (ENSAPOG00000013702) #22	ENSAPOG00000013736	ENSAPOG00000013745	ripor3 (ENSAPOG00000013774)
Bicolor damselfish	MODERN SPECIES	1307										ENSSPAG00000003345	ENSSPAG00000003374	REM1 (ENSSPAG00000003414)	pnp4a (ENSSPAG00000003419)	trib3 (ENSSPAG00000003459)	lmcd1 (ENSSPAG00000003464)	mcm2 (ENSSPAG00000003485) #22
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Tetraodontidae	ANCESTRAL SPECIES	289															ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23
Fugu	MODERN SPECIES	10	ENSTRUG00000021583	ENSTRUG00000020276	IP6K1 (ENSTRUG00000026515)	ENSTRUG00000031648	ENSTRUG00000027111	ENSTRUG00000030015	ASB14 (ENSTRUG00000004831)	rps23 (ENSTRUG00000032236)	ENSTRUG00000027702	ENSTRUG00000023267	pde12 (ENSTRUG00000005159)	gmppb (ENSTRUG00000005517)	lmcd1 (ENSTRUG00000005704)	aldh1l1 (ENSTRUG00000006080)	pigu (ENSTRUG00000007128)	mcm2 (ENSTRUG00000007322) #22	ENSTRUG00000029249 #23	ENSTRUG00000030747	ENSTRUG00000030545	ENSTRUG00000028331	ENSTRUG00000028322	ENSTRUG00000026377	ENSTRUG00000026351	ENSTRUG00000032675	ENSTRUG00000020080	ENSTRUG00000032621	ahcy (ENSTRUG00000002607)	asip (ENSTRUG00000003467)	chmp4b (ENSTRUG00000033019)	ccdc71 (ENSTRUG00000030040)	pdhb (ENSTRUG00000002340)
Tetraodon	MODERN SPECIES	26	lrrc39 (ENSTNIG00000004723)	MAP1S (ENSTNIG00000004722)	il17rd (ENSTNIG00000017503)	arhgef3 (ENSTNIG00000017502)	IP6K1 (ENSTNIG00000017501)	IP6K1 (ENSTNIG00000017500)	ASB14 (ENSTNIG00000017499)	rps23 (ENSTNIG00000002407)	ENSTNIG00000017498	pde12 (ENSTNIG00000017497)	gmppb (ENSTNIG00000017496)	lmcd1 (ENSTNIG00000017495)	ABHD6 (ENSTNIG00000017494)	aldh1l1 (ENSTNIG00000017493)	pigu (ENSTNIG00000017492)	mcm2 (ENSTNIG00000017491) #22	ENSTNIG00000017490 #23	blcap (ENSTNIG00000017489)	ripor3 (ENSTNIG00000017488)	CHD6 (ENSTNIG00000017487)	pck1 (ENSTNIG00000017486)	ENSTNIG00000017485	appl1 (ENSTNIG00000006821)	ENSTNIG00000000796	ENSTNIG00000001632	ENSTNIG00000003021	ENSTNIG00000003567	ENSTNIG00000000231	ENSTNIG00000014251	ENSTNIG00000014252	fezf2 (ENSTNIG00000014253)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	1839															pigu (ENSLBEG00000025914)	mcm2 (ENSLBEG00000025859) #22
Ballan wrasse	MODERN SPECIES	736													TMEM74B (ENSLBEG00000005908)	psmf1 (ENSLBEG00000005942)	pigu (ENSLBEG00000006055)	mcm2 (ENSLBEG00000006141) #22	ENSLBEG00000006243 #23	blcap (ENSLBEG00000006265)	ripor3 (ENSLBEG00000006284)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.a.b	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
European seabass	MODERN SPECIES	10	ENSDLAG00005010670	ENSDLAG00005018463	ENSDLAG00005010648	ENSDLAG00005010643	ENSDLAG00005003923	ENSDLAG00005003925	ENSDLAG00005031509	ENSDLAG00005034830	ENSDLAG00005027176	ENSDLAG00005034007	ENSDLAG00005003939	ENSDLAG00005027938	ENSDLAG00005020249	ENSDLAG00005020243	ENSDLAG00005020193	ENSDLAG00005020042 #22	ENSDLAG00005020023 #23	blcap (ENSDLAG00005020020)	ripor3 (ENSDLAG00005020011)	ENSDLAG00005016739	ENSDLAG00005016675	ENSDLAG00005014719	ENSDLAG00005014560	GRIP2 (ENSDLAG00005012133)	ENSDLAG00005010961	LSM3 (ENSDLAG00005031719)	ENSDLAG00005031114	ENSDLAG00005033166	ENSDLAG00005010870	ENSDLAG00005030692	ywhaba (ENSDLAG00005010824)
Large yellow croaker	MODERN SPECIES	478	GPR37L1 (ENSLCRG00005020136)	atp2b4 (ENSLCRG00005020232)	ENSLCRG00005020448	cept1b (ENSLCRG00005020474)	dram2b (ENSLCRG00005020552)	ANGPT4 (ENSLCRG00005020616)	ENSLCRG00005020796	ENSLCRG00005020807	cand2 (ENSLCRG00005020877)	sec13 (ENSLCRG00005021200)	ENSLCRG00005021280	rbl1 (ENSLCRG00005021384)	ENSLCRG00005021558	psmf1 (ENSLCRG00005021567)	pigu (ENSLCRG00005021665)	mcm2 (ENSLCRG00005021884) #22	blcap (ENSLCRG00005021930)	CHD6 (ENSLCRG00005022498)	rspo4 (ENSLCRG00005023660)	PTPRT (ENSLCRG00005023843)	ENSLCRG00005023893	ENSLCRG00005023894	zgc:171566 (ENSLCRG00005023895)	GRIP2 (ENSLCRG00005023898)	slc6a6b (ENSLCRG00005023902)	LSM3 (ENSLCRG00005023912)	ENSLCRG00005023915	RIMS4 (ENSLCRG00005023916)	YWHAB (ENSLCRG00005023917)	tomm34 (ENSLCRG00005023918)	ENSLCRG00005023920
Gilthead seabream	MODERN SPECIES	20	dennd6aa (ENSSAUG00010022554)	slmapa (ENSSAUG00010022524)	FLNB (ENSSAUG00010016399)	ENSSAUG00010016321	ENSSAUG00010016319	ENSSAUG00010016314	ENSSAUG00010016312	ENSSAUG00010016311	ENSSAUG00010016308	ENSSAUG00010016301	ENSSAUG00010016297	rbl1 (ENSSAUG00010015485)	ENSSAUG00010015468	psmf1 (ENSSAUG00010015466)	pigu (ENSSAUG00010015457)	mcm2 (ENSSAUG00010015440) #22	ENSSAUG00010015438 #23	blcap (ENSSAUG00010015437)	ripor3 (ENSSAUG00010015434)	CHD6 (ENSSAUG00010014707)	rspo4 (ENSSAUG00010014677)	PTPRT (ENSSAUG00010001672)	zgc:171566 (ENSSAUG00010001184)	GRIP2 (ENSSAUG00010001085)	slc6a6b (ENSSAUG00010000496)	ENSSAUG00010000338	LSM3 (ENSSAUG00010000328)	ENSSAUG00010000306	ENSSAUG00010000303	RIMS4 (ENSSAUG00010007649)	YWHAB (ENSSAUG00010007643)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Cottioidei	ANCESTRAL SPECIES		ENSGT00390000006044	ENSGT00390000005874.j	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000160129	ENSGT00940000165514	ENSGT00940000154984.B	ENSGT00940000160096	ENSGT00940000161337.a.a.b.a.a.a.a.a.a	ENSGT00940000157086.b	ENSGT00390000005197.b	ENSGT00530000063880.a	ENSGT00950000183202.a.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00940000163190.h.a.b	ENSGT00940000163864	ENSGT00940000154404.b	ENSGT00940000158263	ENSGT00390000011228.b.a.e.a	ENSGT00950000183077.a.b	ENSGT01030000235208	ENSGT00390000003839.a	ENSGT00390000013266
Lumpfish	MODERN SPECIES	20	cox6c (ENSCLMG00005019568)	ENSCLMG00005019504	KCNS1 (ENSCLMG00005019503)	ENSCLMG00005019502	ENSCLMG00005019500	ENSCLMG00005019499	ENSCLMG00005019498	matn4 (ENSCLMG00005019482)	ENSCLMG00005019479	RBPJL (ENSCLMG00005019477)	ENSCLMG00005019476	ENSCLMG00005019475	rbl1 (ENSCLMG00005018994)	psmf1 (ENSCLMG00005018988)	pigu (ENSCLMG00005018982)	mcm2 (ENSCLMG00005018892) #22	blcap (ENSCLMG00005018891)	ENSCLMG00005018889	ENSCLMG00005018887	CHD6 (ENSCLMG00005009283)	rspo4 (ENSCLMG00005009209)	ENSCLMG00005009208	PTPRT (ENSCLMG00005008937)	aldh4a1 (ENSCLMG00005007771)	ENSCLMG00005007760	ASCL5 (ENSCLMG00005007759)	ENSCLMG00005007758	PIK3C2B (ENSCLMG00005003083)	ENSCLMG00005004010	mkrn2 (ENSCLMG00005004009)	ENSCLMG00005004008
Stickleback	MODERN SPECIES	587	dynlrb2 (ENSGACG00000000011)	ENSGACG00000000012	smpd4 (ENSGACG00000000013)	DOCK3 (ENSGACG00000000014)	cand2 (ENSGACG00000000015)	cox6c (ENSGACG00000000016)	ENSGACG00000000017	ENSGACG00000000018	KCNS1 (ENSGACG00000000019)	ENSGACG00000000020	ENSGACG00000000021	matn4 (ENSGACG00000000022)	ENSGACG00000000023	rbl1 (ENSGACG00000000024)	psmf1 (ENSGACG00000000025)	mcm2 (ENSGACG00000000027) #22	ENSGACG00000000030	ENSGACG00000000031 #23	blcap (ENSGACG00000000033)	ripor3 (ENSGACG00000000035)	CHD6 (ENSGACG00000000037)	PTPRT (ENSGACG00000000039)
Perciformes_a	ANCESTRAL SPECIES	41	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951
Pike perch	MODERN SPECIES	46	ENSSLUG00000012381	cox6c (ENSSLUG00000012374)	ANGPT4 (ENSSLUG00000011967)	ENSSLUG00000011928	ENSSLUG00000011920	ENSSLUG00000011914	cand2 (ENSSLUG00000010664)	sec13 (ENSSLUG00000010459)	ENSSLUG00000010428	dnase1l4.2 (ENSSLUG00000010416)	ENSSLUG00000010397	rbl1 (ENSSLUG00000009964)	TMEM74B (ENSSLUG00000009929)	psmf1 (ENSSLUG00000009925)	pigu (ENSSLUG00000009917)	mcm2 (ENSSLUG00000009787) #22	ENSSLUG00000009745 #23	blcap (ENSSLUG00000009739)	ripor3 (ENSSLUG00000009731)	ENSSLUG00000005468	rspo4 (ENSSLUG00000004968)	PTPRT (ENSSLUG00000004751)	zgc:171566 (ENSSLUG00000004705)	GRIP2 (ENSSLUG00000004685)	slc6a6b (ENSSLUG00000004216)
Channel bull blenny	MODERN SPECIES	201														psmf1 (ENSCGOG00000005993)	pigu (ENSCGOG00000005995)	mcm2 (ENSCGOG00000006049) #22	ENSCGOG00000007102	ENSCGOG00000007104
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Climbing perch	MODERN SPECIES	18	ENSATEG00000006393	ENSATEG00000006331	ENSATEG00000006317	ENSATEG00000006283	ENSATEG00000025508	ENSATEG00000006259	ENSATEG00000006129	ENSATEG00000006068	ENSATEG00000006055	ENSATEG00000006049	ENSATEG00000005917	ENSATEG00000005897	ENSATEG00000005830	ENSATEG00000005765	ENSATEG00000005756	ENSATEG00000005658 #22	ENSATEG00000025482 #23	blcap (ENSATEG00000005651)	ENSATEG00000005629	ENSATEG00000005608	ENSATEG00000005598	ENSATEG00000005438	ENSATEG00000005430	ENSATEG00000005329	GRIP2 (ENSATEG00000005261)	ENSATEG00000005177	LSM3 (ENSATEG00000005153)	ENSATEG00000005124	ENSATEG00000005100	ENSATEG00000005068	tomm34 (ENSATEG00000027534)
Siamese fighting fish	MODERN SPECIES	16	ccndbp1 (ENSBSLG00000009761)	ENSBSLG00000009854	tomm34 (ENSBSLG00000009918)	YWHAB (ENSBSLG00000009956)	RIMS4 (ENSBSLG00000010044)	ENSBSLG00000010064	LSM3 (ENSBSLG00000010073)	ENSBSLG00000010116	GRIP2 (ENSBSLG00000011740)	sec13 (ENSBSLG00000012434)	ENSBSLG00000012461	rbl1 (ENSBSLG00000012532)	TMEM74B (ENSBSLG00000012730)	psmf1 (ENSBSLG00000012735)	pigu (ENSBSLG00000012751)	mcm2 (ENSBSLG00000012803) #22	ENSBSLG00000012908 #23	ENSBSLG00000012925	sec13 (ENSBSLG00000012974)	dnase1l4.2 (ENSBSLG00000012984)	ENSBSLG00000012990	rbl1 (ENSBSLG00000013014)	TMEM74B (ENSBSLG00000013705)	ENSBSLG00000013712	blcap (ENSBSLG00000013721)	ripor3 (ENSBSLG00000014068)	CHD6 (ENSBSLG00000014218)	rspo4 (ENSBSLG00000014721)	rspo4 (ENSBSLG00000014756)	PTPRT (ENSBSLG00000014784)	zgc:171566 (ENSBSLG00000016657)
Zig-zag eel	MODERN SPECIES	19	C1QA (ENSMAMG00000013566)	ENSMAMG00000013589	ENSMAMG00000013499	ENSMAMG00000013525	ENSMAMG00000013490	ENSMAMG00000013482	ENSMAMG00000013474	ENSMAMG00000013447	ENSMAMG00000013444	ENSMAMG00000013427	ENSMAMG00000013369	ENSMAMG00000013318	ENSMAMG00000013306	ENSMAMG00000013292	ENSMAMG00000013240	ENSMAMG00000013179 #22	blcap (ENSMAMG00000013164)	ENSMAMG00000013154	ENSMAMG00000013111	ENSMAMG00000013086	ENSMAMG00000027283	ENSMAMG00000013034	ENSMAMG00000013021	GRIP2 (ENSMAMG00000012888)	ENSMAMG00000012821	LSM3 (ENSMAMG00000027704)	ENSMAMG00000025253	ENSMAMG00000012777	ENSMAMG00000012756	tomm34 (ENSMAMG00000012740)	ENSMAMG00000012702
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Carangaria_A	ANCESTRAL SPECIES	58	ENSGT00940000160096	ENSGT00940000159787	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b
Seriola	ANCESTRAL SPECIES	79	ENSGT00940000160096	ENSGT00940000159787	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813.g	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.b	ENSGT00950000182846.a.a.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000163911.a.a.b.a.a.a.a.b.h	ENSGT00940000163911.a.a.b.a.b.j	ENSGT01100000263625.B	ENSGT01030000235115.c	ENSGT00940000158986	ENSGT01040000241001	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951
Greater amberjack	MODERN SPECIES	58	KCNS1 (ENSSDUG00000009952)	ENSSDUG00000009917	cox6c (ENSSDUG00000009898)	ENSSDUG00000009880	ENSSDUG00000009857	ANGPT4 (ENSSDUG00000009828)	cand2 (ENSSDUG00000009736)	sec13 (ENSSDUG00000009712)	dnase1l4.2 (ENSSDUG00000009635)	ENSSDUG00000009611	ENSSDUG00000009560	rbl1 (ENSSDUG00000009497)	ENSSDUG00000009481	psmf1 (ENSSDUG00000009454)	pigu (ENSSDUG00000009387)	mcm2 (ENSSDUG00000009334) #22	ENSSDUG00000009313 #23	blcap (ENSSDUG00000009308)	ripor3 (ENSSDUG00000009248)	ENSSDUG00000009233
Yellowtail amberjack	MODERN SPECIES	3216	STK4 (ENSSLDG00000005771)	ENSSLDG00000005808	cox6c (ENSSLDG00000005824)	ANGPT4 (ENSSLDG00000006007)	ENSSLDG00000006471	cand2 (ENSSLDG00000006504)	sec13 (ENSSLDG00000006564)	ENSSLDG00000006594	dnase1l4.2 (ENSSLDG00000006623)	ENSSLDG00000006645	ENSSLDG00000006696	rbl1 (ENSSLDG00000006727)	ENSSLDG00000006789	psmf1 (ENSSLDG00000006804)	pigu (ENSSLDG00000006823)	mcm2 (ENSSLDG00000006844) #22	blcap (ENSSLDG00000006886)	ripor3 (ENSSLDG00000006901)	ENSSLDG00000006963	ENSSLDG00000006978	ENSSLDG00000006990	ENSSLDG00000007038
Barramundi perch	MODERN SPECIES	268						cand2 (ENSLCAG00010010323)	sec13 (ENSLCAG00010010550)	dnase1l4.2 (ENSLCAG00010010583)	ENSLCAG00010010589	rbl1 (ENSLCAG00010010623)	ENSLCAG00010010776	pigu (ENSLCAG00010010779)	psmf1 (ENSLCAG00010010788)	ENSLCAG00010010791	ENSLCAG00010010793	mcm2 (ENSLCAG00010010878) #22	ENSLCAG00010011394	blcap (ENSLCAG00010011404)	ripor3 (ENSLCAG00010011409)	CHD6 (ENSLCAG00010011649)	rspo4 (ENSLCAG00010012991)	PTPRT (ENSLCAG00010013037)
Pleuronectoidei	ANCESTRAL SPECIES	31	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000161337.a.a.b.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000183202.a.a	ENSGT00530000063880.a	ENSGT00390000012257	ENSGT00390000014941	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00390000014105	ENSGT00940000153717.a.b	ENSGT00940000158986	ENSGT00940000160937	ENSGT00940000155326.b	ENSGT00490000043388.b.a	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00940000166055	ENSGT00940000158934	ENSGT01090000260040.b.a.b.y.b	ENSGT00940000154697.a.b	ENSGT01050000244866.D.a.c
Tongue sole	MODERN SPECIES	2	rbm39a (ENSCSEG00000020394)	tsen2 (ENSCSEG00000020407)	MKRN2OS (ENSCSEG00000020411)	mkrn2 (ENSCSEG00000020415)	ENSCSEG00000020423	PIK3C2B (ENSCSEG00000020431)	ENSCSEG00000020442	CHST15 (ENSCSEG00000020445)	aldh4a1 (ENSCSEG00000020448)	RNF123 (ENSCSEG00000020456)	AMIGO3 (ENSCSEG00000020465)	psmf1 (ENSCSEG00000020469)	tma7 (ENSCSEG00000020472)	slmapa (ENSCSEG00000020484)	ENSCSEG00000020757	mcm2 (ENSCSEG00000020768) #22	cyc1 (ENSCSEG00000020779)	smpd4 (ENSCSEG00000020794)	pigu (ENSCSEG00000000428)	ccdc51 (ENSCSEG00000000439)
Turbot	MODERN SPECIES	18	mych (ENSSMAG00000024502)	romo1 (ENSSMAG00000002225)	ergic3 (ENSSMAG00000002145)	ENSSMAG00000002115	cyc1 (ENSSMAG00000002094)	ENSSMAG00000037016	raly (ENSSMAG00000001107)	ENSSMAG00000001134	ahcy (ENSSMAG00000001148)	ENSSMAG00000001174	ENSSMAG00000001196	ENSSMAG00000001211	ENSSMAG00000033180	ENSSMAG00000001221	ENSSMAG00000001234	ENSSMAG00000001283 #22	ENSSMAG00000001364 #23	blcap (ENSSMAG00000001391)	ENSSMAG00000001403	ENSSMAG00000029660	ENSSMAG00000001453	ENSSMAG00000001528	ENSSMAG00000036804	ENSSMAG00000001575	ENSSMAG00000001646	ENSSMAG00000036970	GRIP2 (ENSSMAG00000001664)	ENSSMAG00000001779	LSM3 (ENSSMAG00000037919)	ENSSMAG00000034190	ENSSMAG00000001844
Cod	MODERN SPECIES	4	ENSGMOG00000020267	or90a1 (ENSGMOG00000036460)	ENSGMOG00000032011	ENSGMOG00000009447	ENSGMOG00000022904	KCNS1 (ENSGMOG00000009434)	ENSGMOG00000009422	ENSGMOG00000009416	ENSGMOG00000036758	ENSGMOG00000016530	ENSGMOG00000016515	ENSGMOG00000016476	ENSGMOG00000030069	ENSGMOG00000011628	ENSGMOG00000011636	ENSGMOG00000011681 #22	ENSGMOG00000025916 #23	blcap (ENSGMOG00000020157)	ENSGMOG00000011700	ENSGMOG00000011715	ENSGMOG00000034789	ENSGMOG00000001119	ENSGMOG00000005084	GRIP2 (ENSGMOG00000029861)	ENSGMOG00000001938	LSM3 (ENSGMOG00000011024)	ENSGMOG00000033940	ENSGMOG00000011031	ENSGMOG00000012246	tomm34 (ENSGMOG00000011260)	ENSGMOG00000011248
Protacanthopterygii	ANCESTRAL SPECIES	98	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.b	ENSGT00940000165535	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a	ENSGT00950000182846.a.a.b.b	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000017740.a.b	ENSGT00940000158890.h	ENSGT00940000163873.c.b	ENSGT00440000038003	ENSGT00940000165085.b	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000007160.a.a	ENSGT00940000160561	ENSGT00940000159711.g	ENSGT00390000008429.e.a	ENSGT00390000001505	ENSGT01030000234648.a.a.c.a.g
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	101	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT00940000168601.c.b	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e #22	ENSGT00730000111323.f #23	ENSGT00490000043388.b.a.o	ENSGT00940000154583.e.b.b.a.b	ENSGT00940000155615.i.a.b	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b	ENSGT00940000158890.h.b	ENSGT00440000038003	ENSGT00940000165085.b.b	ENSGT00390000005874.j	ENSGT00940000155514.c.c.b	ENSGT00390000007160.a.a.o	ENSGT00940000160561.ab	ENSGT00940000159711.g.f	ENSGT00390000008429.e.a.e
Huchen	MODERN SPECIES	2148								ENSHHUG00000007621	smarcd1 (ENSHHUG00000007432)	gpd1b (ENSHHUG00000007353)	cers5 (ENSHHUG00000007316)	ENSHHUG00000007198	ENSHHUG00000007182	dnase1l4.2 (ENSHHUG00000007112)	ccdc51 (ENSHHUG00000007107)	mcm2 (ENSHHUG00000007073) #22	ENSHHUG00000007068 #23	zgc:171566 (ENSHHUG00000007034)
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e #22	ENSGT00730000111323.f #23	ENSGT00490000043388.b.a.o	ENSGT00390000013951	ENSGT00940000154583.e.b.b.a.a	ENSGT00940000155615.i.a.a	ENSGT01060000248575.D.c.b.b.a.m.b.b.a	ENSGT00940000154583.e.b.b.a.b	ENSGT00940000155615.i.a.b	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b	ENSGT00940000158890.h.b	ENSGT00440000038003	ENSGT00940000165085.b.b	ENSGT00390000005874.j	ENSGT00940000155514.c.c.b
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e.a #22	ENSGT00730000111323.f #23	ENSGT00490000043388.b.a.o	ENSGT00950000184126	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b	ENSGT00940000158890.h.b	ENSGT00440000038003	ENSGT00390000005874.j	ENSGT00940000155514.c.c.b	ENSGT00390000007160.a.a.o	ENSGT00940000160561.ab	ENSGT00940000159711.g.f	ENSGT00390000008429.e.a.e	ENSGT00950000183146.b.b.d	ENSGT00940000158813.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	54	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT00940000169926.a	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e.a #22	ENSGT00730000111323.f #23	ENSGT00490000043388.b.a.o	ENSGT00950000184126	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b	ENSGT00940000158890.h.b.a	ENSGT00940000158890.h.b.b	ENSGT00440000038003	ENSGT00390000005874.j	ENSGT00940000155514.c.c.b	ENSGT00390000007160.a.a.o	ENSGT00940000160561.ab	ENSGT00940000159711.g.f	ENSGT00390000008429.e.a.e	ENSGT00950000183146.b.b.d
Coho salmon	MODERN SPECIES		ITGA7 (ENSOKIG00005019140)	ENSOKIG00005019100	GLS2 (ENSOKIG00005018748)	ENSOKIG00005018711	CELA1 (ENSOKIG00005018672)	ENSOKIG00005018138	ENSOKIG00005018130	ENSOKIG00005018122	ENSOKIG00005017949	smarcd1 (ENSOKIG00005017726)	ENSOKIG00005017692	ENSOKIG00005017656	dnase1l4.2 (ENSOKIG00005017638)	gpd1b (ENSOKIG00005017558)	ENSOKIG00005017534	MCM2 (ENSOKIG00005017128) #22	ENSOKIG00005017105 #23	ENSOKIG00005017098	zgc:171566 (ENSOKIG00005017086)	ENSOKIG00005017059	ENSOKIG00005017055	ENSOKIG00005017045	ENSOKIG00005017042	ENSOKIG00005016829	ENSOKIG00005016787	GRIP2 (ENSOKIG00005011407)	ENSOKIG00005011182	sec13 (ENSOKIG00005011074)	cand2 (ENSOKIG00005009619)	rpl32 (ENSOKIG00005009537)	ENSOKIG00005009522
Chinook salmon	MODERN SPECIES	11	DOCK3 (ENSOTSG00005004638)	manf (ENSOTSG00005004628)	rbm15b (ENSOTSG00005004627)	ENSOTSG00005004624	AMIGO3 (ENSOTSG00005004623)	ENSOTSG00005004622	GRM7 (ENSOTSG00005004621)	ENSOTSG00005004618	SMARCD1 (ENSOTSG00005004274)	gpd1b (ENSOTSG00005004201)	ENSOTSG00005004194	ENSOTSG00005004190	ENSOTSG00005004188	dnase1l4.2 (ENSOTSG00005004183)	ccdc51 (ENSOTSG00005004176)	mcm2 (ENSOTSG00005003900) #22	zgc:171566 (ENSOTSG00005003894)	LSM3 (ENSOTSG00005003892)	ENSOTSG00005003890	rpl32 (ENSOTSG00005003887)	cand2 (ENSOTSG00005002395)	sec13 (ENSOTSG00005002355)	igsf8 (ENSOTSG00005002347)	ENSOTSG00005002341	ENSOTSG00005002316	ENSOTSG00005002310	gls2b (ENSOTSG00005002305)	CELA1 (ENSOTSG00005001148)	CELA1 (ENSOTSG00005001112)	ENSOTSG00005001106	ENSOTSG00005001103
Rainbow trout	MODERN SPECIES	8	gls2b (ENSOMYG00000029215)	ENSOMYG00000060523	ENSOMYG00000029112	ENSOMYG00000056096	ENSOMYG00000049787	ENSOMYG00000049086	asic1b (ENSOMYG00000032449)	smarcd1 (ENSOMYG00000032432)	gpd1b (ENSOMYG00000032387)	cers5 (ENSOMYG00000075255)	ENSOMYG00000027870	ENSOMYG00000072396	dnsl3 (ENSOMYG00000032287)	ENSOMYG00000032261	ccdc51 (ENSOMYG00000032259)	mcm2 (ENSOMYG00000031800) #22	ENSOMYG00000031634 #23	zgc:171566 (ENSOMYG00000031594)	ENSOMYG00000055231	ENSOMYG00000055980	cand2 (ENSOMYG00000030716)	rpl32 (ENSOMYG00000028139)	ENSOMYG00000066629	ENSOMYG00000061470	ENSOMYG00000057567	ENSOMYG00000064291	ENSOMYG00000032724	DOCK3 (ENSOMYG00000032548)	ENSOMYG00000065223	manf (ENSOMYG00000069831)	rbm15b (ENSOMYG00000032495)
Oncorhynchus	ANCESTRAL SPECIES	72	ENSGT01050000244866.D.a.e.a.b	ENSGT00940000177988	ENSGT00390000002689.h.a.a	ENSGT00940000161168.j	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000165535.d	ENSGT00940000168601.c.a.b	ENSGT00940000156629.a.a	ENSGT01030000234515.a.a.a.k.c	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000168313	ENSGT00940000164287.e	ENSGT01050000244824.F.e.b #22	ENSGT00730000111323.e #23	ENSGT00490000043388.b.a.p	ENSGT00390000013951.jd	ENSGT00940000154583.e.b.b.a.a	ENSGT00940000155615.i.a.a	ENSGT01060000248575.D.c.b.b.a.m.b.b.a	ENSGT00940000153393.B.g	ENSGT00940000158890.h.a	ENSGT00940000163873.c.b	ENSGT00940000165085.b.a	ENSGT00940000155514.c.c.a	ENSGT00390000007160.a.a.p	ENSGT00940000160561.`b	ENSGT00940000159711.g.e	ENSGT00390000008429.e.a.f
Oncorhynchus_a	ANCESTRAL SPECIES	4	ENSGT00940000157009.c.b	ENSGT00950000183066.a.b.a.b.l.d	ENSGT00390000002689.h.a.a	ENSGT00940000161168.j	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000165535.d	ENSGT00940000168601.c.a.b	ENSGT00940000156629.a.a	ENSGT01030000234515.a.a.a.k.c	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000171889	ENSGT00940000164287.e	ENSGT01050000244824.F.e.b #22	ENSGT00730000111323.e #23	ENSGT00390000013951.jd	ENSGT00940000154583.e.b.b.a.a	ENSGT00940000155615.i.a.a	ENSGT01060000248575.D.c.b.b.a.m.b.b.a	ENSGT00940000153393.B.g	ENSGT00940000158890.h.a	ENSGT00940000163873.c.b	ENSGT00940000165085.b.a	ENSGT00940000155514.c.c.a	ENSGT00390000007160.a.a.p	ENSGT00940000160561.`b	ENSGT00940000159711.g.e	ENSGT00390000008429.e.a.f	ENSGT00390000001505
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	31	ENSOTSG00005004333	ITGA7 (ENSOTSG00005002629)	bloc1s1 (ENSOTSG00005002607)	rdh5 (ENSOTSG00005002601)	gls2b (ENSOTSG00005001488)	ENSOTSG00005001302	ENSOTSG00005001193	smarcd1 (ENSOTSG00005001073)	cers5 (ENSOTSG00005001046)	ENSOTSG00005027009	BCDIN3D (ENSOTSG00005027007)	ENSOTSG00005027005	dnase1l4.1 (ENSOTSG00005027002)	ENSOTSG00005027001	ccdc51 (ENSOTSG00005027000)	mcm2 (ENSOTSG00005026998) #22	ENSOTSG00005026997 #23	LSM3 (ENSOTSG00005026996)	ENSOTSG00005026988	ENSOTSG00005026986	GRIP2 (ENSOTSG00005026979)	ENSOTSG00005026976	ANKRD60 (ENSOTSG00005026973)	ENSOTSG00005026955	rab22a (ENSOTSG00005026948)	ENSOTSG00005026947	vapb (ENSOTSG00005026944)	APCDD1L (ENSOTSG00005026942)	ENSOTSG00005026940	SRC (ENSOTSG00005026474)	ENSOTSG00005026461
Chinook salmon	MODERN SPECIES	2920	ENSOTSG00005030617	ITGA7 (ENSOTSG00005030627)	bloc1s1 (ENSOTSG00005032588)	rdh5 (ENSOTSG00005032590)	gls2b (ENSOTSG00005032595)	ENSOTSG00005032620	ENSOTSG00005032622	smarcd1 (ENSOTSG00005032624)	cers5 (ENSOTSG00005032654)	ENSOTSG00005032656	BCDIN3D (ENSOTSG00005032657)	ENSOTSG00005032658	dnase1l4.1 (ENSOTSG00005032664)	ENSOTSG00005032672	ccdc51 (ENSOTSG00005032674)	mcm2 (ENSOTSG00005032681) #22	ENSOTSG00005032716 #23	LSM3 (ENSOTSG00005032719)	ENSOTSG00005032722	ENSOTSG00005032725	GRIP2 (ENSOTSG00005032728)	ENSOTSG00005032731
Coho salmon	MODERN SPECIES	25	ITGA7 (ENSOKIG00005002324)	bloc1s1 (ENSOKIG00005002625)	rdh5 (ENSOKIG00005002638)	gls2b (ENSOKIG00005002739)	ENSOKIG00005003434	ENSOKIG00005003435	ENSOKIG00005003442	ENSOKIG00005003447	ENSOKIG00005003499	SMARCD1 (ENSOKIG00005003707)	cers5 (ENSOKIG00005003924)	ENSOKIG00005003953	ENSOKIG00005003959	dnase1l4.1 (ENSOKIG00005003981)	ENSOKIG00005004037	mcm2 (ENSOKIG00005004073) #22	LSM3 (ENSOKIG00005004219)	ENSOKIG00005004225	ENSOKIG00005004314	ENSOKIG00005004522	GRIP2 (ENSOKIG00005004775)	ENSOKIG00005009283	sec13 (ENSOKIG00005009338)	rpl32 (ENSOKIG00005009374)	ENSOKIG00005009392	ENSOKIG00005009435	DOCK3 (ENSOKIG00005009589)	ENSOKIG00005011918	ENSOKIG00005011951	manf (ENSOKIG00005011974)	rbm15b (ENSOKIG00005011984)
Rainbow trout	MODERN SPECIES	28	gls2b (ENSOMYG00000030014)	ENSOMYG00000030008	ENSOMYG00000050503	ENSOMYG00000051033	ENSOMYG00000056542	ENSOMYG00000062884	ENSOMYG00000029990	cers5 (ENSOMYG00000075534)	ENSOMYG00000035065	ENSOMYG00000035072	ENSOMYG00000035059	dnase1l4.1 (ENSOMYG00000073690)	dnase1l4.1 (ENSOMYG00000034990)	ENSOMYG00000034925	ccdc51 (ENSOMYG00000064669)	mcm2 (ENSOMYG00000033325) #22	ENSOMYG00000033062 #23	zgc:171566 (ENSOMYG00000033030)	LSM3 (ENSOMYG00000033020)	ENSOMYG00000071683	ENSOMYG00000033005	GRIP2 (ENSOMYG00000066525)	ENSOMYG00000065048	ENSOMYG00000035109	sec13 (ENSOMYG00000035210)	ENSOMYG00000055767	rpl32 (ENSOMYG00000035278)	ENSOMYG00000035309	ENSOMYG00000063564	DOCK3 (ENSOMYG00000002166)	ENSOMYG00000071478
Salmo	ANCESTRAL SPECIES	33	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e #22	ENSGT00730000111323.f #23	ENSGT00490000043388.b.a.o	ENSGT00390000013951	ENSGT00940000154583.e.b.b.a.b	ENSGT00940000155615.i.a.b	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b	ENSGT00940000158890.h.b	ENSGT00440000038003	ENSGT00940000165085.b.b	ENSGT00940000165085.a	ENSGT00390000005874.j	ENSGT00940000155514.c.c.b	ENSGT00390000007160.a.a.o	ENSGT00940000160561.ab
River trout	MODERN SPECIES	5	gls2b (ENSSTUG00000016763)	ENSSTUG00000016735	CELA1 (ENSSTUG00000016694)	ENSSTUG00000016682	ENSSTUG00000016678	asic1b (ENSSTUG00000016407)	smarcd1 (ENSSTUG00000016029)	gpd1b (ENSSTUG00000015795)	cers5 (ENSSTUG00000015768)	ENSSTUG00000015759	ENSSTUG00000015745	dnase1l4.2 (ENSSTUG00000015701)	ENSSTUG00000015674	ENSSTUG00000015665	ccdc51 (ENSSTUG00000015661)	mcm2 (ENSSTUG00000015273) #22	ENSSTUG00000015217 #23	zgc:171566 (ENSSTUG00000015204)	LSM3 (ENSSTUG00000015178)	ENSSTUG00000013971	ENSSTUG00000013938	ENSSTUG00000013926	GRIP2 (ENSSTUG00000009540)	sec13 (ENSSTUG00000009381)	cand2 (ENSSTUG00000008322)	rpl32 (ENSSTUG00000008287)	ENSSTUG00000008279	ENSSTUG00000008271	ENSSTUG00000008262	ENSSTUG00000008255	DCAF1 (ENSSTUG00000008140)
Atlantic salmon	MODERN SPECIES	3	gls2b (ENSSSAG00000055116)	ENSSSAG00000087837	ENSSSAG00000055002	ENSSSAG00000055016	ENSSSAG00000120768	ENSSSAG00000087361	asic1b (ENSSSAG00000047167)	smarcd1 (ENSSSAG00000043397)	gpd1b (ENSSSAG00000043162)	cers5 (ENSSSAG00000067468)	CL062 (ENSSSAG00000043016)	ENSSSAG00000108536	dnase1l4.2 (ENSSSAG00000042975)	ccdc51 (ENSSSAG00000082299)	ENSSSAG00000108862	MCM2 (ENSSSAG00000042717) #22	ENSSSAG00000042697 #23	zgc:171566 (ENSSSAG00000042676)	ENSSSAG00000042655	ENSSSAG00000039620	ENSSSAG00000006160	sec13 (ENSSSAG00000106589)	cand2 (ENSSSAG00000106568)	ENSSSAG00000119644	rpl32 (ENSSSAG00000087271)	ENSSSAG00000062932	ENSSSAG00000062654	ENSSSAG00000054650	ENSSSAG00000065584	manf (ENSSSAG00000107019)	pcbp4 (ENSSSAG00000053929)
Salmoninae	ANCESTRAL SPECIES	322									ENSGT01030000234515.a.a.a.k.c	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000168313	ENSGT00940000164287.e	ENSGT01050000244824.F.f #22	ENSGT00730000111323.e #23	ENSGT00490000043388.b.a.p	ENSGT00390000013951	ENSGT00940000154583.e.b.b.a.a	ENSGT00940000155615.i.a.a	ENSGT01060000248575.D.c.b.b.a.m.b.b.a	ENSGT00940000153393.B.g	ENSGT00940000158890.h.a	ENSGT00940000163873.c.b	ENSGT00940000165085.b.a	ENSGT00940000155514.c.c.a	ENSGT00390000007160.a.a.p	ENSGT00940000160561.`b	ENSGT00940000159711.g.e	ENSGT00390000008429.e.a.f
Salmoninae_a	ANCESTRAL SPECIES	152	ENSGT00940000159891.c	ENSGT00390000002689.h	ENSGT00940000161168.j	ENSGT00390000010463.a.a.a.a.f	ENSGT01030000234528.B.b.a.a.a.c.b.v	ENSGT00940000165535.d	ENSGT00940000168601.c.a.b	ENSGT00940000156629.a.a	ENSGT01030000234515.a.a.a.k.c	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000168313	ENSGT00940000164287.e	ENSGT01050000244824.F.f #22	ENSGT00730000111323.e #23	ENSGT00490000043388.b.a.p
Salmo	ANCESTRAL SPECIES	61	ENSGT00940000159891.c	ENSGT00390000002689.h	ENSGT00940000161168.j	ENSGT00390000010463.a.a.a.a.f	ENSGT01030000234528.B.b.a.a.a.c.b.v	ENSGT00940000165535.d	ENSGT00940000168601.d	ENSGT00940000156629.a.a	ENSGT01030000234515.a.a.a.k.c	ENSGT01090000260174.d	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000176379.b	ENSGT00940000164287.e	ENSGT01050000244824.F.f #22	ENSGT00730000111323.e #23	ENSGT00490000043388.b.a.p	ENSGT00940000154583.e.b.b.a.a	ENSGT00940000155615.i.a.a	ENSGT01060000248575.D.c.b.b.a.m.b.b.a	ENSGT00940000153393.B.g	ENSGT00940000158890.h.a	ENSGT00940000163873.c.b	ENSGT00940000165085.b.a	ENSGT00940000155514.c.c.a	ENSGT00390000007160.a.a.p	ENSGT00940000160561.`b	ENSGT00940000159711.g.e	ENSGT01060000250309.c	ENSGT00990000212314
River trout	MODERN SPECIES	7	ENSSTUG00000018204	ENSSTUG00000018192	ENSSTUG00000018188	ENSSTUG00000018181	ENSSTUG00000018177	ENSSTUG00000018086	smarcd1 (ENSSTUG00000017777)	ENSSTUG00000017751	cers5 (ENSSTUG00000017612)	BCDIN3D (ENSSTUG00000017749)	ENSSTUG00000017602	dnase1l4.1 (ENSSTUG00000017594)	dnase1l4.1 (ENSSTUG00000017592)	ENSSTUG00000017584	ccdc51 (ENSSTUG00000017580)	mcm2 (ENSSTUG00000017472) #22	zgc:171566 (ENSSTUG00000017413)	ENSSTUG00000017400 #23	ENSSTUG00000015292	ENSSTUG00000015181	ENSSTUG00000015151	GRIP2 (ENSSTUG00000015022)	ENSSTUG00000014977	ENSSTUG00000014974	ENSSTUG00000014969	sec13 (ENSSTUG00000014944)	rpl32 (ENSSTUG00000014905)	ENSSTUG00000014885	ENSSTUG00000014815	DOCK3 (ENSSTUG00000004144)	manf (ENSSTUG00000003628)
Atlantic salmon	MODERN SPECIES	14	RDH5 (ENSSSAG00000073617)	gls2b (ENSSSAG00000071268)	ENSSSAG00000086986	ENSSSAG00000071023	smarcd1 (ENSSSAG00000067559)	cers5 (ENSSSAG00000043031)	ENSSSAG00000110229	ENSSSAG00000042994	ENSSSAG00000106190	ENSSSAG00000105877	dnase1l4.1 (ENSSSAG00000090871)	dnase1l4.1 (ENSSSAG00000067463)	dnase1l4.1 (ENSSSAG00000042104)	dnase1l4.1 (ENSSSAG00000010981)	ENSSSAG00000117722	ENSSSAG00000078605 #22	ENSSSAG00000078558 #23	zgc:171566 (ENSSSAG00000078536)	LSM3 (ENSSSAG00000078534)	ENSSSAG00000090074	ENSSSAG00000078396	GRIP2 (ENSSSAG00000076971)	ENSSSAG00000076912	ENSSSAG00000113964	sec13 (ENSSSAG00000008770)	rpl32 (ENSSSAG00000048749)	ENSSSAG00000008683	ENSSSAG00000008666	DOCK3 (ENSSSAG00000079345)	manf (ENSSSAG00000079178)	rbm15b (ENSSSAG00000079177)
Huchen	MODERN SPECIES	2541									ENSHHUG00000051387	ENSHHUG00000051389	BCDIN3D (ENSHHUG00000051392)	ENSHHUG00000051394	dnase1l4.1 (ENSHHUG00000051401)	ENSHHUG00000051418	ccdc51 (ENSHHUG00000051426)	mcm2 (ENSHHUG00000051435) #22	ENSHHUG00000051602 #23	ENSHHUG00000051606	LSM3 (ENSHHUG00000051607)
Northern pike	MODERN SPECIES	16							gls2b (ENSELUG00000019242)	rdh5 (ENSELUG00000019207)	bloc1s1 (ENSELUG00000027972)	ITGA7 (ENSELUG00000019180)	ENSELUG00000019127	ENSELUG00000019134	dnase1l4.1 (ENSELUG00000019112)	ENSELUG00000028682	ccdc51 (ENSELUG00000019018)	mcm2 (ENSELUG00000019000) #22	ENSELUG00000018971 #23	zgc:171566 (ENSELUG00000018957)	lsm3 (ENSELUG00000018922)	SLC6A6 (ENSELUG00000018892)	GRIP2 (ENSELUG00000018842)	ENSELUG00000018777	sec13 (ENSELUG00000018648)	cand2 (ENSELUG00000018618)	rpl32 (ENSELUG00000030440)	SSUH2 (ENSELUG00000018514)	ENSELUG00000018500	ENSELUG00000018480	ENSELUG00000028334	DCAF1 (ENSELUG00000018442)	DOCK3 (ENSELUG00000018356)
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234528.B.b.a.a.a.d	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00950000182846.a.a.b.a.c	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00940000155514.c	ENSGT00390000007160.a.a	ENSGT00940000160561
Otophysi	ANCESTRAL SPECIES	2	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234528.B.b.a.a.a.d	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000166028	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00940000155514.c	ENSGT00390000007160.a.a	ENSGT00940000160561
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234528.B.b.a.a.a.d	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00950000182846.a.a.b.a.c	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000153973	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00940000155514.c	ENSGT00390000007160.a.a
Channel catfish	MODERN SPECIES	13	gls2b (ENSIPUG00000009764)	tmprss12 (ENSIPUG00000009741)	ENSIPUG00000009731	ENSIPUG00000009724	asic1 (ENSIPUG00000009680)	smarcd1 (ENSIPUG00000009660)	gpd1 (ENSIPUG00000009634)	CERS5 (ENSIPUG00000009566)	ENSIPUG00000009553	bcdin3d (ENSIPUG00000009539)	ENSIPUG00000009514	dnase1l4.2 (ENSIPUG00000009506)	ENSIPUG00000009381	ENSIPUG00000009357	ccdc51 (ENSIPUG00000009350)	mcm2 (ENSIPUG00000009302) #22	podxl2 (ENSIPUG00000009274) #23	Ggh (ENSIPUG00000009249)	ENSIPUG00000009238	lsm3 (ENSIPUG00000009207)	slc6a6b (ENSIPUG00000009147)	GRIP2 (ENSIPUG00000008974)	sec13 (ENSIPUG00000008812)	cand2 (ENSIPUG00000008700)	rpl32 (ENSIPUG00000008634)	ENSIPUG00000008605	ENSIPUG00000008562	ENSIPUG00000008545	ENSIPUG00000008535	DOCK3 (ENSIPUG00000008398)	MANF (ENSIPUG00000008352)
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a.c.a	ENSGT01030000234528.B.b.a.a.a.d.a	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00950000182846.a.a.b.a.c	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000153973	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00940000155514.c	ENSGT00390000007160.a.a
Characoidei	ANCESTRAL SPECIES	100						ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00950000182846.a.a.b.a.c	ENSGT00940000166028	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000153973	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003	ENSGT00940000165085	ENSGT00940000155514.c	ENSGT00390000007160.a.a
Red-bellied piranha	MODERN SPECIES	608						smarcd1 (ENSPNAG00000003757)	gpd1b (ENSPNAG00000023170)	cers5 (ENSPNAG00000023206)	ENSPNAG00000023234	BCDIN3D (ENSPNAG00000023242)	ENSPNAG00000003763	dnase1l4.2 (ENSPNAG00000023285)	tma7 (ENSPNAG00000023323)	ENSPNAG00000023363	ccdc51 (ENSPNAG00000023375)	mcm2 (ENSPNAG00000023422) #22	ENSPNAG00000023434 #23	zgc:171566 (ENSPNAG00000023440)	LSM3 (ENSPNAG00000023467)
Mexicana tetra	MODERN SPECIES	14	PLCH2 (ENSAMXG00000006425)	ENSAMXG00000024789	LACTBL1 (ENSAMXG00000004600)	ENSAMXG00000043590	ENSAMXG00000029622	smarcd1 (ENSAMXG00000004577)	gpd1b (ENSAMXG00000029979)	cers5 (ENSAMXG00000004553)	ENSAMXG00000025806	BCDIN3D (ENSAMXG00000004546)	ENSAMXG00000038993	dnase1l4.2 (ENSAMXG00000036786)	ENSAMXG00000030524	tma7 (ENSAMXG00000004518)	ccdc51 (ENSAMXG00000039839)	mcm2 (ENSAMXG00000004474) #22	zgc:171566 (ENSAMXG00000031950)	LSM3 (ENSAMXG00000041214)	slc6a6b (ENSAMXG00000004425)	GRIP2 (ENSAMXG00000004381)	sec13 (ENSAMXG00000004356)	cand2 (ENSAMXG00000032469)	rpl32 (ENSAMXG00000043771)	ENSAMXG00000043820	ssuh2.4 (ENSAMXG00000031934)	ENSAMXG00000004300	ENSAMXG00000043899	DOCK3 (ENSAMXG00000004203)	manf (ENSAMXG00000040494)	rbm15b (ENSAMXG00000025805)	pcbp4 (ENSAMXG00000033125)
Electric eel	MODERN SPECIES	356									ENSEEEG00000023638	BCDIN3D (ENSEEEG00000023637)	ENSEEEG00000023635	dnase1l4.2 (ENSEEEG00000023633)	ENSEEEG00000023632	ENSEEEG00000023631	ccdc51 (ENSEEEG00000023629)	mcm2 (ENSEEEG00000023589) #22	zgc:171566 (ENSEEEG00000023578)	LSM3 (ENSEEEG00000023576)	slc6a6b (ENSEEEG00000023351)	GRIP2 (ENSEEEG00000023313)	sec13 (ENSEEEG00000023311)	cand2 (ENSEEEG00000023309)	RPL32 (ENSEEEG00000023305)	ENSEEEG00000023301	ssuh2.4 (ENSEEEG00000023299)	ENSEEEG00000023295	ENSEEEG00000023291	mpst (ENSEEEG00000023290)	ENSEEEG00000023288	mief1 (ENSEEEG00000023286)	napsa (ENSEEEG00000023282)
Cyprinoidei	ANCESTRAL SPECIES	96		ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.a.b	ENSGT01030000234528.B.b.a.a.a.d.c	ENSGT00940000168601	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000163467.a.b.b.b.a.a	ENSGT00950000182846.a.a.b.a.d	ENSGT00950000182846.a.a.b.b	ENSGT00940000166028	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT01050000244806.b.a.b.c.a.a.b.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.b.a.a	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b	ENSGT00390000003488.a.b.a	ENSGT00390000000777	ENSGT00940000154779.a.a.d	ENSGT00940000165007.b	ENSGT00940000158364.b	ENSGT00940000162148	ENSGT00940000160775	ENSGT00940000163917.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	808									ENSGT01030000234515.a.a.a.m.a	ENSGT01090000260194.a	ENSGT00940000161090.B.c.b.b.a.f	ENSGT00950000182846.a.a.b.a.d.a	ENSGT00950000182846.a.a.b.b.k.b	ENSGT00940000166028	ENSGT00940000164287.a.b	ENSGT01050000244824.F.g #22	ENSGT00730000111323.g.b #23
Cyprininae_a	ANCESTRAL SPECIES	1025																ENSGT01050000244824.F.g #22	ENSGT00730000111323.g.b #23
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	369														dnase1l4.2 (ENSSGRG00000045800)	dnase1l4.1 (ENSSGRG00000045806)	mcm2 (ENSSGRG00000045827) #22	ENSSGRG00000046122	zgc:171566 (ENSSGRG00000046124)	ENSSGRG00000046126	ENSSGRG00000046128	zgc:194627 (ENSSGRG00000046129)	MYO9B (ENSSGRG00000046133)	s1pr4 (ENSSGRG00000046161)	ncln (ENSSGRG00000046162)	CERS1 (ENSSGRG00000046194)	tnfaip8l1 (ENSSGRG00000046195)	mydgf (ENSSGRG00000046200)	loxl5a (ENSSGRG00000046202)	mibp (ENSSGRG00000046203)	ENSSGRG00000046234	ENSSGRG00000046235
Golden-line barbel	MODERN SPECIES	3037																mcm2 (ENSSGRG00000011177) #22
Common carp reference	MODERN SPECIES	43	ENSCCRG00000055642	ENSCCRG00000069747	ENSCCRG00000055478	ENSCCRG00000038391	ENSCCRG00000075034	ENSCCRG00000080414	ENSCCRG00000071246	cers5 (ENSCCRG00000036296)	ENSCCRG00000072000	ENSCCRG00000036305	ENSCCRG00000012643	ENSCCRG00000073556	ENSCCRG00000036806	dnase1l4.2 (ENSCCRG00000039317)	tma7 (ENSCCRG00000077514)	mcm2 (ENSCCRG00000054626) #22	ENSCCRG00000024338 #23	ENSCCRG00000071276	ENSCCRG00000021582	ENSCCRG00000057239	zgc:194627 (ENSCCRG00000049894)	ENSCCRG00000043639	s1pr4 (ENSCCRG00000057515)	ncln (ENSCCRG00000030135)	ENSCCRG00000008459	tnfaip8l1 (ENSCCRG00000057448)	mydgf (ENSCCRG00000031450)	loxl5a (ENSCCRG00000032114)	mibp (ENSCCRG00000032098)	ENSCCRG00000032130	ENSCCRG00000032140
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3173							ENSCARG00000058474	ENSCARG00000058428	cers5 (ENSCARG00000058309)	ENSCARG00000058298	ENSCARG00000058209	dnase1l4.2 (ENSCARG00000058184)	dnase1l4.1 (ENSCARG00000058159)	tma7 (ENSCARG00000058133)	ccdc51 (ENSCARG00000058121)	mcm2 (ENSCARG00000057932) #22	ENSCARG00000057908	zgc:171566 (ENSCARG00000057802)	ENSCARG00000057796	ENSCARG00000055802	ENSCARG00000055795	ENSCARG00000055778
Goldfish	MODERN SPECIES	1226					ENSCARG00000041819	ENSCARG00000041803	ENSCARG00000041791	ENSCARG00000041769	cers5 (ENSCARG00000041552)	ENSCARG00000041526	ENSCARG00000041396	dnase1l4.2 (ENSCARG00000041304)	dnase1l4.1 (ENSCARG00000041168)	tma7 (ENSCARG00000041148)	ccdc51 (ENSCARG00000041125)	mcm2 (ENSCARG00000040158) #22	ENSCARG00000040096	zgc:171566 (ENSCARG00000039988)	ENSCARG00000039973	ENSCARG00000039963	ENSCARG00000039942	ENSCARG00000039929	MYO9B (ENSCARG00000039757)	s1pr4 (ENSCARG00000039705)	ncln (ENSCARG00000039435)	CERS1 (ENSCARG00000039420)
Cyprininae	ANCESTRAL SPECIES	551			ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.b.a.b.b.a.b.a.a.a.b	ENSGT01030000234515.a.a.a.m.b	ENSGT01090000260194.b	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.e	ENSGT00940000163467.a.b.b.b.a.a.a.a	ENSGT00940000163467.a.b.b.b.a.a.a.b	ENSGT00950000182846.a.a.b.a.d.b	ENSGT00950000182846.a.a.b.b.k.a	ENSGT00940000168313	ENSGT00940000164287.b	ENSGT00950000182846.a.a.b.b.l	ENSGT00940000164287.a.a	ENSGT01050000244824.F.h #22	ENSGT00730000111323.g.a #23	ENSGT00490000043388.b.a.q	ENSGT01050000244806.b.a.b.c.a.a.b.b.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.b.a.a.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.a.b.a.a.b.b
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	14	ENSCARG00000004284	ENSCARG00000004295	ENSCARG00000004314	ENSCARG00000004334	ENSCARG00000004346	ENSCARG00000004356	ENSCARG00000004366	cers5 (ENSCARG00000004396)	ENSCARG00000004495	BCDIN3D (ENSCARG00000004498)	ENSCARG00000004523	dnase1l4.2 (ENSCARG00000004552)	dnase1l4.1 (ENSCARG00000004576)	ENSCARG00000004602	ccdc51 (ENSCARG00000004608)	mcm2 (ENSCARG00000004622) #22	ENSCARG00000004665 #23	zgc:171566 (ENSCARG00000004671)	ENSCARG00000004686	ENSCARG00000004694	ENSCARG00000004698	zgc:194627 (ENSCARG00000004706)	zgc:194627 (ENSCARG00000004714)	zgc:194627 (ENSCARG00000004720)	zgc:194627 (ENSCARG00000004732)	MYO9B (ENSCARG00000004764)	s1pr4 (ENSCARG00000004985)	ncln (ENSCARG00000005010)	CERS1 (ENSCARG00000005080)	mydgf (ENSCARG00000005087)	mibp (ENSCARG00000005096)
Goldfish	MODERN SPECIES	14	ENSCARG00000044806	ENSCARG00000044804	ENSCARG00000044792	ENSCARG00000044789	ENSCARG00000007653	cers5 (ENSCARG00000007046)	ENSCARG00000006995	BCDIN3D (ENSCARG00000006991)	ENSCARG00000006978	ENSCARG00000006975	ENSCARG00000006971	dnase1l4.2 (ENSCARG00000006947)	dnase1l4.1 (ENSCARG00000006935)	tma7 (ENSCARG00000006928)	ccdc51 (ENSCARG00000006921)	mcm2 (ENSCARG00000006800) #22	ENSCARG00000006757 #23	zgc:171566 (ENSCARG00000006739)	ENSCARG00000006729	ENSCARG00000006717	ENSCARG00000006703	ENSCARG00000006695	ENSCARG00000006690	ENSCARG00000006681	rnasel4 (ENSCARG00000006665)	rnasel4 (ENSCARG00000006658)	ENSCARG00000006651	ENSCARG00000006615	ENSCARG00000006566	ENSCARG00000006539	ENSCARG00000006524
Cyprininae_a	ANCESTRAL SPECIES	320					ENSGT01030000234515.a.a.a.n	ENSGT01090000260194.b	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a.f	ENSGT00940000161090.B.c.b.b.a.e	ENSGT00940000163467.a.b.b.b.a.a.a.a	ENSGT00940000163467.a.b.b.b.a.a.a.b	ENSGT00950000182846.a.a.b.a.d.b	ENSGT00950000182846.a.a.b.b.k.a	ENSGT00950000182846.a.a.b.b.l	ENSGT00940000164287.a.a	ENSGT01050000244824.F.h #22	ENSGT00730000111323.g.a #23	ENSGT00730000111323.h #23	ENSGT00490000043388.b.a.q	ENSGT01050000244806.b.a.b.c.a.a.b.b.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.b.a.a.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.a.b.a.a.b.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.a.b.a.a.b.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.b.b.a.a	ENSGT00990000209519.a.a	ENSGT00940000156845.yc.b	ENSGT01050000244887.B.d	ENSGT00500000044945.a.b	ENSGT01030000234515.b.p	ENSGT00390000003488.a.b.a.i	ENSGT00390000000777.c
Common carp reference	MODERN SPECIES	5	ENSCCRG00000033310	ENSCCRG00000066856	ENSCCRG00000044359	ENSCCRG00000054857	cers5 (ENSCCRG00000051105)	ENSCCRG00000067065	ENSCCRG00000057310	ENSCCRG00000044740	ENSCCRG00000068149	ENSCCRG00000064108	dnase1l4.2 (ENSCCRG00000026300)	dnase1l4.1 (ENSCCRG00000026272)	ENSCCRG00000074839	dnase1l4.1 (ENSCCRG00000065204)	ccdc51 (ENSCCRG00000066535)	mcm2 (ENSCCRG00000026201) #22	ENSCCRG00000074609 #23	ENSCCRG00000075112	zgc:171566 (ENSCCRG00000024346)	ENSCCRG00000026195	ENSCCRG00000065418	ENSCCRG00000024469	ENSCCRG00000069885	ENSCCRG00000054931	ENSCCRG00000081711	ENSCCRG00000064369	ENSCCRG00000058856	ENSCCRG00000073014	ENSCCRG00000072831	ENSCCRG00000059895	ENSCCRG00000047847
Golden-line barbel	MODERN SPECIES	1067								cers5 (ENSSGRG00000017914)	ENSSGRG00000017932	BCDIN3D (ENSSGRG00000017933)	ENSSGRG00000017934	dnase1l4.2 (ENSSGRG00000017935)	dnase1l4.1 (ENSSGRG00000017936)	dnase1l4.1 (ENSSGRG00000017937)	ENSSGRG00000017946	mcm2 (ENSSGRG00000017947) #22	ENSSGRG00000018005 #23	zgc:171566 (ENSSGRG00000018006)	ENSSGRG00000018007	ENSSGRG00000018008	zgc:194627 (ENSSGRG00000018010)	ENSSGRG00000018011	ENSSGRG00000018013	zgc:194627 (ENSSGRG00000018014)	MYO9B (ENSSGRG00000018018)	s1pr4 (ENSSGRG00000018462)	ncln (ENSSGRG00000018474)	CERS1 (ENSSGRG00000018979)	ENSSGRG00000018981	tnfaip8l1 (ENSSGRG00000018982)	mydgf (ENSSGRG00000018983)
Zebrafish	MODERN SPECIES	14	ENSDARG00000071662	ENSDARG00000093686	ENSDARG00000095295	ENSDARG00000071667	ENSDARG00000076358	ENSDARG00000077252	cers5 (ENSDARG00000002365)	cox14 (ENSDARG00000092124)	BCDIN3D (ENSDARG00000074111)	ENSDARG00000043242	ENSDARG00000079328	dnase1l4.2 (ENSDARG00000011376)	dnase1l4.1 (ENSDARG00000015123)	tma7 (ENSDARG00000071670)	ccdc51 (ENSDARG00000058828)	mcm2 (ENSDARG00000102798) #22	GGH (ENSDARG00000105118)	ENSDARG00000104592	ENSDARG00000094155	ENSDARG00000103696	ENSDARG00000098966	ENSDARG00000104399	zgc:194627 (ENSDARG00000102594)	MYO9B (ENSDARG00000078313)	s1pr4 (ENSDARG00000074851)	ncln (ENSDARG00000058861)	CERS1 (ENSDARG00000063412)	tnfaip8l1 (ENSDARG00000086457)	mydgf (ENSDARG00000071679)	ENSDARG00000116752	loxl5a (ENSDARG00000071680)
Clupeiformes	ANCESTRAL SPECIES	345													ENSGT00950000182846.a.a.b.a.c	ENSGT00940000168313	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000158890	ENSGT00940000163873.c.b	ENSGT00940000163873.d	ENSGT00440000038003
Denticle herring	MODERN SPECIES	3	TMEM43 (ENSDCDG00000015112)	ENSDCDG00000015086	cishb (ENSDCDG00000015078)	twf2b (ENSDCDG00000014861)	rpusd4 (ENSDCDG00000014842)	qrich1 (ENSDCDG00000014837)	ENSDCDG00000014834	NBL1 (ENSDCDG00000014833)	ENSDCDG00000032924	ENSDCDG00000032747	celsr2 (ENSDCDG00000032620)	dstyk (ENSDCDG00000031876)	dnase1l4.2 (ENSDCDG00000031807)	ENSDCDG00000031803	ccdc51 (ENSDCDG00000031801)	mcm2 (ENSDCDG00000031792) #22	ENSDCDG00000031782 #23	zgc:171566 (ENSDCDG00000031775)	LSM3 (ENSDCDG00000031769)	slc6a6b (ENSDCDG00000031544)	GRIP2 (ENSDCDG00000031515)	sec13 (ENSDCDG00000031506)	cand2 (ENSDCDG00000031447)	rpl32 (ENSDCDG00000031439)	ENSDCDG00000031437	ddo (ENSDCDG00000031436)	ENSDCDG00000031426	ora4 (ENSDCDG00000031425)	ENSDCDG00000031423	ssu72 (ENSDCDG00000031421)	TMEM240 (ENSDCDG00000031419)
Osteoglossiformes	ANCESTRAL SPECIES	34	ENSGT00390000002689	ENSGT00940000161168	ENSGT00390000010463.a.a.a.a	ENSGT01030000234528.B.b.a.a.a	ENSGT00940000165535	ENSGT00940000168601	ENSGT00940000158414	ENSGT00940000156629	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a	ENSGT01090000260194	ENSGT00940000153993.B	ENSGT00940000161090.B.c.b.b.a	ENSGT00390000003710	ENSGT00940000164287	ENSGT01050000244824.F #22	ENSGT00730000111323 #23	ENSGT00490000043388.b.a	ENSGT00390000013951	ENSGT00940000154583.e.a	ENSGT00940000155615.i.a	ENSGT00940000155615.j	ENSGT00940000153393.B	ENSGT00390000017740.a.b	ENSGT00940000163873	ENSGT00440000038003	ENSGT00940000165085	ENSGT00390000005874.j	ENSGT00940000155514.c	ENSGT00390000007160.a.a.r	ENSGT00940000160561
P. kingsleyae	MODERN SPECIES	51	ITGA7 (ENSPKIG00000001224)	bloc1s1 (ENSPKIG00000024779)	rdh5 (ENSPKIG00000024770)	gls2b (ENSPKIG00000024748)	cela1.3 (ENSPKIG00000024733)	ENSPKIG00000024723	ENSPKIG00000024713	smarcd1 (ENSPKIG00000024684)	gpd1b (ENSPKIG00000024669)	COX14 (ENSPKIG00000024660)	cers5 (ENSPKIG00000024634)	BCDIN3D (ENSPKIG00000024617)	ENSPKIG00000024610	TMA7B (ENSPKIG00000024601)	ccdc51 (ENSPKIG00000024587)	mcm2 (ENSPKIG00000024553) #22
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015027355	ENSSFOG00015025491	ENSSFOG00015031401	ENSSFOG00015032804	ENSSFOG00015025933	ENSSFOG00015027284	ENSSFOG00015028401	ENSSFOG00015006648	smarcd1 (ENSSFOG00015006704)	gpd1b (ENSSFOG00015006749)	cers5 (ENSSFOG00015006797)	ENSSFOG00015006854	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006878	ccdc51 (ENSSFOG00015006990)	mcm2 (ENSSFOG00015007003) #22	ENSSFOG00015007051 #23	zgc:171566 (ENSSFOG00015007061)	LSM3 (ENSSFOG00015007071)	slc6a6b (ENSSFOG00015007103)	GRIP2 (ENSSFOG00015007150)	sec13 (ENSSFOG00015007199)	cand2 (ENSSFOG00015007228)	ENSSFOG00015026029	ssuh2rs1 (ENSSFOG00015007404)	ssuh2.4 (ENSSFOG00015007409)	ENSSFOG00015007426	ENSSFOG00015007443	DCAF1 (ENSSFOG00015007471)	DOCK3 (ENSSFOG00015007666)	manf (ENSSFOG00015024701)
Spotted gar	MODERN SPECIES	671	ENSLOCG00000013709	ENSLOCG00000013702	CPNE9 (ENSLOCG00000013677)	MTMR14 (ENSLOCG00000013669)	LHFPL4 (ENSLOCG00000013665)	ENSLOCG00000013661	ENSLOCG00000013656	si:dkey-19e4.5 (ENSLOCG00000013652)	SETD5 (ENSLOCG00000013641)	ENSLOCG00000013623	zgc:171775 (ENSLOCG00000013616)	dnase1l4.2 (ENSLOCG00000013612)	ENSLOCG00000013606	tma7 (ENSLOCG00000013602)	ccdc51 (ENSLOCG00000013595)	mcm2 (ENSLOCG00000013582) #22	ENSLOCG00000013579 #23	ABTB1 (ENSLOCG00000013573) #24	zgc:171566 (ENSLOCG00000013564)	LSM3 (ENSLOCG00000013560)	slc6a6b (ENSLOCG00000013551)	grip2a (ENSLOCG00000013537)	sec13 (ENSLOCG00000013529)	cand2 (ENSLOCG00000013520)	rpl32 (ENSLOCG00000013512)	ENSLOCG00000013502	ssuh2.4 (ENSLOCG00000013496)	ENSLOCG00000013492	ENSLOCG00000013481	DCAF1 (ENSLOCG00000013471)	DOCK3 (ENSLOCG00000013416)
Elephant shark	MODERN SPECIES	1500	ENSCMIG00000018825	ENSCMIG00000018827	ENSCMIG00000018829	ENSCMIG00000018830	ENSCMIG00000018831	ENSCMIG00000018832	ENSCMIG00000018834	ENSCMIG00000018837	ENSCMIG00000018838	ENSCMIG00000018839	ENSCMIG00000018840	COPG1 (ENSCMIG00000018845)	hmces (ENSCMIG00000018866)	PLXNA1 (ENSCMIG00000018959)	tpra1 (ENSCMIG00000019216) #21	mcm2 (ENSCMIG00000019230) #22	ENSCMIG00000019235 #23	ABTB1 (ENSCMIG00000019237) #24	mgll (ENSCMIG00000019241) #25	kbtbd12 (ENSCMIG00000019242) #26	sec61a1 (ENSCMIG00000019258) #27	ruvbl1 (ENSCMIG00000019320) #29	eefsec (ENSCMIG00000019328) #30	ENSCMIG00000019331 #32	rpn1 (ENSCMIG00000019336) #34	HCFC1 (ENSCMIG00000019363)	rab7a (ENSCMIG00000019410) #35	h1-10 (ENSCMIG00000019429)	ENSCMIG00000019431	txnrd3 (ENSCMIG00000019447)	CHST13 (ENSCMIG00000019479)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Lamprey	MODERN SPECIES	5682																mcm2 (ENSPMAG00000004823) #22
Hagfish	MODERN SPECIES	59	ENSEBUG00000009186	setd3 (ENSEBUG00000006193)	ENSEBUG00000007548	ENSEBUG00000003845	ENSEBUG00000003292	ENSEBUG00000014175	ENSEBUG00000003665	ENSEBUG00000011548	LDLRAD2 (ENSEBUG00000013324)	ENSEBUG00000003860	ENSEBUG00000017064	farsb (ENSEBUG00000006846)	M6PR (ENSEBUG00000012165)	wdr45 (ENSEBUG00000012687)	rab7a (ENSEBUG00000003339) #35	mcm2 (ENSEBUG00000017080) #22	CHST13 (ENSEBUG00000007715)
Ciona	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Ciona intestinalis	DUPLICATION
Ciona intestinalis	MODERN SPECIES	10	ENSCING00000020976	ENSCING00000002530	ENSCING00000010128	ENSCING00000002532	ENSCING00000002527	ENSCING00000015157	ENSCING00000015155	ENSCING00000002525	ENSCING00000022787	ENSCING00000017598	ENSCING00000004589	ftzf (ENSCING00000004593)	ENSCING00000022567	ENSCING00000014991	ENSCING00000021669	ENSCING00000014926 #22	ENSCING00000010070	ENSCING00000007851	ENSCING00000007852	ENSCING00000004625	ENSCING00000014944	ENSCING00000004616	ENSCING00000004597	ENSCING00000014981	ENSCING00000020564	ENSCING00000014986	ENSCING00000019706	ENSCING00000014988	ENSCING00000022352	ENSCING00000007846 #22	ENSCING00000018520
Ciona intestinalis	MODERN SPECIES	10	ENSCING00000021669	ENSCING00000014926 #22	ENSCING00000010070	ENSCING00000007851	ENSCING00000007852	ENSCING00000004625	ENSCING00000014944	ENSCING00000004616	ENSCING00000004597	ENSCING00000014981	ENSCING00000020564	ENSCING00000014986	ENSCING00000019706	ENSCING00000014988	ENSCING00000022352	ENSCING00000007846 #22	ENSCING00000018520	ENSCING00000014921	ENSCING00000014874	ENSCING00000010068	ENSCING00000021904	ENSCING00000020623	ENSCING00000022107	ENSCING00000014875	ENSCING00000014876	ENSCING00000024829	ENSCING00000025059	ENSCING00000007823	ENSCING00000020970	ENSCING00000014877	ENSCING00000010069
Ciona savignyi	MODERN SPECIES	307	ENSCSAVG00000006476	ENSCSAVG00000006473	ENSCSAVG00000006470	ENSCSAVG00000006465	ENSCSAVG00000006464	ENSCSAVG00000006463	ENSCSAVG00000006460	ENSCSAVG00000006359	ENSCSAVG00000006356	ENSCSAVG00000006212	ENSCSAVG00000006208	ENSCSAVG00000006187	ENSCSAVG00000006156	ENSCSAVG00000006045	ENSCSAVG00000006033	ENSCSAVG00000005742 #22	ENSCSAVG00000005724	ENSCSAVG00000005721	ENSCSAVG00000005718	ENSCSAVG00000005716	ENSCSAVG00000005201	ENSCSAVG00000005170	ENSCSAVG00000005167	ENSCSAVG00000005165	ENSCSAVG00000005088	ENSCSAVG00000004757	ENSCSAVG00000004754	ENSCSAVG00000004670	ENSCSAVG00000004668	ENSCSAVG00000004666	ENSCSAVG00000004659
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01050000244824.F #22
Fruitfly	MODERN SPECIES	19	CG7878 (FBgn0037549)	CG9667 (FBgn0037550)	Arl8 (FBgn0037551)	grn (FBgn0001138)	CheA84a (FBgn0261290)	CG7800 (FBgn0037552)	CG18249 (FBgn0037553)	PolI (FBgn0037554)	Ada2b (FBgn0037555)	CG9636 (FBgn0037556)	CG33722 (FBgn0064126)	CG18749 (FBgn0042182)	CG15864 (FBgn0040528)	mtg (FBgn0260386)	RPA1 (FBgn0010173)	Mcm2 (FBgn0014861) #22	CG9630 (FBgn0037561)	ato (FBgn0010433)	Nazo (FBgn0037562)	CG11672 (FBgn0037563)	CG31464 (FBgn0051464)	CG31463 (FBgn0051463)	CG9626 (FBgn0037565)	mRpL1 (FBgn0037566)	nac (FBgn0265351)	Sgt1 (FBgn0265101)	tex (FBgn0037569)	CG11693 (FBgn0037570)	CG11694 (FBgn0037571)	CG11698 (FBgn0037572)	CG7483 (FBgn0037573)
Caenorhabditis elegans	MODERN SPECIES	1	set-24 (WBGene00012845)	Y43F11A.1 (WBGene00012841)	Y17G7B.18 (WBGene00012469)	Y17G7B.17 (WBGene00012468)	cnt-1 (WBGene00000565)	Y17G7B.22 (WBGene00012473)	arrd-8 (WBGene00012467)	arrd-7 (WBGene00012464)	nadk-2 (WBGene00012463)	ippk-1 (WBGene00012466)	tpi-1 (WBGene00006601)	cyn-16 (WBGene00000892)	Y17G7B.8 (WBGene00012462)	Y17G7B.12 (WBGene00012465)	glb-29 (WBGene00012461)	mcm-2 (WBGene00003154) #22	Y17G7B.23 (WBGene00044030)	dhps-1 (WBGene00012460)	Y17G7B.3 (WBGene00012459)	ash-2 (WBGene00012458)	Y17G7B.20 (WBGene00012471)	Y17G7B.21 (WBGene00012472)	acbp-6 (WBGene00012457)	mex-1 (WBGene00003228)	W03C9.5 (WBGene00012221)	rab-7 (WBGene00004271)	W03C9.2 (WBGene00012220)	W03C9.1 (WBGene00012219)	W03C9.6 (WBGene00012222)	W03C9.8 (WBGene00012223)	lin-29 (WBGene00003015)
Yeast	MODERN SPECIES	1	YBL008W-A	ALK2 (YBL009W)	YBL010C	SCT1 (YBL011W)	YBL012C	FMT1 (YBL013W)	RRN6 (YBL014C)	ACH1 (YBL015W)	FUS3 (YBL016W)	PEP1 (YBL017C)	POP8 (YBL018C)	APN2 (YBL019W)	RFT1 (YBL020W)	HAP3 (YBL021C)	PIM1 (YBL022C)	MCM2 (YBL023C) #22	NCL1 (YBL024W)	RRN10 (YBL025W)	LSM2 (YBL026W)	RPL19B (YBL027W)	YBL028C	YBL029W	YBL029C-A	PET9 (YBL030C)	SHE1 (YBL031W)	HEK2 (YBL032W)	RIB1 (YBL033C)	STU1 (YBL034C)	POL12 (YBL035C)	YBL036C	APL3 (YBL037W)