Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Euteleostomi	ANCESTRAL SPECIES	8	ENSGT00940000163032	ENSGT00390000014654	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.A	ENSGT00940000166976	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000159992	ENSGT00520000055578.a.a.d	ENSGT00940000166855	ENSGT00940000159556	ENSGT00940000166646	ENSGT00530000063834.e.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00950000183111.b.a	ENSGT00950000182909.b.a.a	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158138	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.a.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.a	ENSGT00940000155981	ENSGT00940000160563	ENSGT00940000156037.a	ENSGT00510000049120	ENSGT00940000156453.a
Sarcopterygii	ANCESTRAL SPECIES	736															ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00390000017195	ENSGT00940000161946	ENSGT00940000165828	ENSGT00940000161371	ENSGT00940000163547	ENSGT00940000159693	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000161092	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439	ENSGT00940000167629	ENSGT00940000162362 #35	ENSGT00940000162013 #37	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D
Mammalia	ANCESTRAL SPECIES	38												ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892
Theria	ANCESTRAL SPECIES	4	ENSGT00390000002428.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000154526.h	ENSGT00940000161750 #15	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00410000029004 #31	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Primates	ANCESTRAL SPECIES	5	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00900000143764 #28	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00900000143764 #28	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00900000143764 #28	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000000903.a.f.a.b.a	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00900000143764 #28	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Pig-tailed macaque	MODERN SPECIES	174	KLHL31 (ENSMNEG00000033545) #7	ENSMNEG00000035875 #8	GCLC (ENSMNEG00000035105) #9	ELOVL5 (ENSMNEG00000044116) #10	GCM1 (ENSMNEG00000037532) #11	FBXO9 (ENSMNEG00000041281) #12	CILK1 (ENSMNEG00000032820) #13	GSTA4 (ENSMNEG00000018065) #14	ENSMNEG00000034303 #15	GSTA3 (ENSMNEG00000037930) #16	TMEM14A (ENSMNEG00000035396) #17	TRAM2 (ENSMNEG00000032001) #18	EFHC1 (ENSMNEG00000041404) #19	ENSMNEG00000007313 #20	PAQR8 (ENSMNEG00000011526) #21	MCM3 (ENSMNEG00000035280) #22	IL17F (ENSMNEG00000038791) #23	ENSMNEG00000033057 #24	IL17A (ENSMNEG00000041013) #25	PKHD1 (ENSMNEG00000037126) #26	TFAP2B (ENSMNEG00000044465) #27	ENSMNEG00000011383 #28	TFAP2D (ENSMNEG00000039212) #29	ENSMNEG00000044311 #30	DEFB112 (ENSMNEG00000036563) #31	DEFB110 (ENSMNEG00000042902) #32	DEFB113 (ENSMNEG00000035185) #33	DEFB114 (ENSMNEG00000028375) #34	CRISP1 (ENSMNEG00000040906) #35	PGK2 (ENSMNEG00000038249) #36	CRISP3 (ENSMNEG00000035624) #37
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00390000007738
Rhesus	MODERN SPECIES	14	LRRC1 (ENSMMUG00000011049)	ENSMMUG00000059097	KLHL31 (ENSMMUG00000023789) #7	GCLC (ENSMMUG00000008684) #9	ELOVL5 (ENSMMUG00000006422) #10	GCM1 (ENSMMUG00000022083) #11	FBXO9 (ENSMMUG00000005340) #12	CILK1 (ENSMMUG00000005344) #13	ENSMMUG00000058208	GSTA4 (ENSMMUG00000014899) #14	GSTA2 (ENSMMUG00000017137) #16	TMEM14A (ENSMMUG00000060163) #17	TRAM2 (ENSMMUG00000013718) #18	EFHC1 (ENSMMUG00000013716) #19	PAQR8 (ENSMMUG00000052626) #21	MCM3 (ENSMMUG00000021149) #22	IL17F (ENSMMUG00000006691) #23	IL17A (ENSMMUG00000007403) #25	PKHD1 (ENSMMUG00000016993) #26	TFAP2B (ENSMMUG00000002869) #27	TFAP2D (ENSMMUG00000002867) #29	DEFB112 (ENSMMUG00000038276) #31	DEFB110 (ENSMMUG00000029616) #32	DEFB113 (ENSMMUG00000029617) #33	DEFB114 (ENSMMUG00000004191) #34	CRISP1 (ENSMMUG00000004190) #35	PGK2 (ENSMMUG00000011998) #36	CRISP3 (ENSMMUG00000019818) #37	ENSMMUG00000054154	ENSMMUG00000029619	ENSMMUG00000046373
Crab-eating macaque	MODERN SPECIES	14	COL9A1 (ENSMFAG00000031890)	COL19A1 (ENSMFAG00000031633)	LMBRD1 (ENSMFAG00000028262)	ENSMFAG00000050203	ADGRB3 (ENSMFAG00000003819)	ENSMFAG00000052667	EYS (ENSMFAG00000032080)	ENSMFAG00000064767	ENSMFAG00000064522	PHF3 (ENSMFAG00000046395)	PTP4A1 (ENSMFAG00000046284)	ENSMFAG00000059971	TRAM2 (ENSMFAG00000042433) #18	EFHC1 (ENSMFAG00000036082) #19	PAQR8 (ENSMFAG00000004629) #21	MCM3 (ENSMFAG00000001888) #22	IL17F (ENSMFAG00000044851) #23	IL17A (ENSMFAG00000059281) #25	PKHD1 (ENSMFAG00000031421) #26	TFAP2B (ENSMFAG00000046210) #27	TFAP2D (ENSMFAG00000040653) #29	DEFB112 (ENSMFAG00000035902) #31	DEFB110 (ENSMFAG00000045112) #32	DEFB113 (ENSMFAG00000052987) #33	DEFB114 (ENSMFAG00000039532) #34	CRISP1 (ENSMFAG00000035443) #35	PGK2 (ENSMFAG00000007944) #36	CRISP3 (ENSMFAG00000037975) #37	CRISP2 (ENSMFAG00000037005)	ENSMFAG00000043215	RHAG (ENSMFAG00000042670)
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Olive baboon	MODERN SPECIES	16	ENSPANG00000041153	ELOVL5 (ENSPANG00000013429) #10	ENSPANG00000039030	ENSPANG00000042447	ENSPANG00000038301	GCM1 (ENSPANG00000037213) #11	FBXO9 (ENSPANG00000015587) #12	CILK1 (ENSPANG00000016921) #13	GSTA4 (ENSPANG00000007356) #14	GSTA1 (ENSPANG00000046442)	GSTA3 (ENSPANG00000017005) #16	TMEM14A (ENSPANG00000045952) #17	TRAM2 (ENSPANG00000005247) #18	EFHC1 (ENSPANG00000020492) #19	PAQR8 (ENSPANG00000005625) #21	MCM3 (ENSPANG00000017188) #22	IL17F (ENSPANG00000011221) #23	IL17A (ENSPANG00000043854) #25	ENSPANG00000024397	PKHD1 (ENSPANG00000020811) #26	TFAP2B (ENSPANG00000026000) #27	TFAP2D (ENSPANG00000017493) #29	DEFB112 (ENSPANG00000050890) #31	DEFB110 (ENSPANG00000006857) #32	DEFB113 (ENSPANG00000015184) #33	DEFB114 (ENSPANG00000009022) #34	ENSPANG00000008642	CRISP1 (ENSPANG00000005250) #35	PGK2 (ENSPANG00000003184) #36	CRISP2 (ENSPANG00000020813)	ENSPANG00000036186
Cercopithecinae_d	ANCESTRAL SPECIES	13	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Drill	MODERN SPECIES	817	ELOVL5 (ENSMLEG00000041247) #10	ENSMLEG00000004252	GCM1 (ENSMLEG00000035639) #11	FBXO9 (ENSMLEG00000043788) #12	CILK1 (ENSMLEG00000006267) #13	GSTA4 (ENSMLEG00000042277) #14	GSTA3 (ENSMLEG00000037252) #16	GSTA5 (ENSMLEG00000036948)	GSTA1 (ENSMLEG00000043178)	GSTA2 (ENSMLEG00000027727)	TMEM14A (ENSMLEG00000043906) #17	TRAM2 (ENSMLEG00000040892) #18	EFHC1 (ENSMLEG00000029768) #19	ENSMLEG00000027940 #20	PAQR8 (ENSMLEG00000013701) #21	MCM3 (ENSMLEG00000041965) #22	ENSMLEG00000038466	IL17F (ENSMLEG00000024263) #23	ENSMLEG00000041887 #24	IL17A (ENSMLEG00000031459) #25	PKHD1 (ENSMLEG00000043301) #26
Sooty mangabey	MODERN SPECIES	97	KLHL31 (ENSCATG00000044715) #7	ENSCATG00000018676 ##8	GCLC (ENSCATG00000033054) #9	ELOVL5 (ENSCATG00000041100) #10	GCM1 (ENSCATG00000008922) #11	FBXO9 (ENSCATG00000019206) #12	CILK1 (ENSCATG00000041316) #13	GSTA4 (ENSCATG00000027052) #14	ENSCATG00000040439 #15	GSTA2 (ENSCATG00000033148)	TMEM14A (ENSCATG00000043586) #17	TRAM2 (ENSCATG00000029584) #18	EFHC1 (ENSCATG00000038309) #19	ENSCATG00000021876 #20	PAQR8 (ENSCATG00000020608) #21	MCM3 (ENSCATG00000031333) #22	IL17F (ENSCATG00000041329) #23	ENSCATG00000035212 #24	IL17A (ENSCATG00000036902) #25	PKHD1 (ENSCATG00000039572) #26	TFAP2B (ENSCATG00000033725) #27	TFAP2D (ENSCATG00000031294) #29	ENSCATG00000040634 #30	DEFB112 (ENSCATG00000031101) #31	DEFB110 (ENSCATG00000038500) #32	DEFB113 (ENSCATG00000031427) #33	DEFB114 (ENSCATG00000033669) #34	ENSCATG00000038484	CRISP1 (ENSCATG00000039100) #35	PGK2 (ENSCATG00000021299) #36	CRISP3 (ENSCATG00000039496) #37
Vervet Monkey	MODERN SPECIES	8	KLHL31 (ENSCSAG00000013164) #7	GCLC (ENSCSAG00000013162) #9	ELOVL5 (ENSCSAG00000013156) #10	GCM1 (ENSCSAG00000013148) #11	FBXO9 (ENSCSAG00000013142) #12	CILK1 (ENSCSAG00000013132) #13	GSTA4 (ENSCSAG00000013126) #14	ENSCSAG00000013119 #15	GSTA2 (ENSCSAG00000013108)	GSTA5 (ENSCSAG00000013097)	GSTA1 (ENSCSAG00000013074)	TMEM14A (ENSCSAG00000013069) #17	TRAM2 (ENSCSAG00000013065) #18	EFHC1 (ENSCSAG00000013059) #19	PAQR8 (ENSCSAG00000019294) #21	MCM3 (ENSCSAG00000013052) #22	IL17F (ENSCSAG00000013043) #23	IL17A (ENSCSAG00000013028) #25	ENSCSAG00000013016	PKHD1 (ENSCSAG00000013005) #26	TFAP2B (ENSCSAG00000012975) #27	TFAP2D (ENSCSAG00000012915) #29	DEFB110 (ENSCSAG00000012904) #32	DEFB113 (ENSCSAG00000012901) #33	DEFB114 (ENSCSAG00000012897) #34	ENSCSAG00000019295	CRISP1 (ENSCSAG00000012884) #35	PGK2 (ENSCSAG00000019296) #36	CRISP3 (ENSCSAG00000012862) #37	CRISP2 (ENSCSAG00000012852)	RHAG (ENSCSAG00000012820)
Rhinopithecus	ANCESTRAL SPECIES	86	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT00390000014907.B	ENSGT00400000022679	ENSGT00390000015066.d	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317.c	ENSGT00390000017600	ENSGT00390000004385	ENSGT00940000161211	ENSGT00910000144211.n.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00900000143764 #28	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Golden snub-nosed monkey	MODERN SPECIES	617	GCLC (ENSRROG00000039518) #9	ELOVL5 (ENSRROG00000038948) #10	GCM1 (ENSRROG00000032236) #11	FBXO9 (ENSRROG00000029600) #12	CILK1 (ENSRROG00000034096) #13	GSTA4 (ENSRROG00000029994) #14	GSTA1 (ENSRROG00000044471)	ENSRROG00000041870	TMEM14A (ENSRROG00000041634) #17	ENSRROG00000030207	TRAM2 (ENSRROG00000036043) #18	EFHC1 (ENSRROG00000022951) #19	ENSRROG00000023565 #20	ENSRROG00000039209	PAQR8 (ENSRROG00000006635) #21	MCM3 (ENSRROG00000045226) #22	ENSRROG00000040384	IL17F (ENSRROG00000010614) #23	ENSRROG00000043580 #24	IL17A (ENSRROG00000040427) #25	PKHD1 (ENSRROG00000035962) #26	TFAP2B (ENSRROG00000036382) #27	ENSRROG00000014074 #28	TFAP2D (ENSRROG00000043555) #29
Black snub-nosed monkey	MODERN SPECIES	1471								LARS2 (ENSRBIG00000038739)	TMEM14A (ENSRBIG00000030712) #17	ENSRBIG00000042424	TRAM2 (ENSRBIG00000042642) #18	EFHC1 (ENSRBIG00000040029) #19	ENSRBIG00000021464 #20	ENSRBIG00000032677	PAQR8 (ENSRBIG00000031177) #21	MCM3 (ENSRBIG00000036354) #22	ENSRBIG00000027505	IL17F (ENSRBIG00000036495) #23	ENSRBIG00000033175 #24	IL17A (ENSRBIG00000044223) #25	PKHD1 (ENSRBIG00000044462) #26	TFAP2B (ENSRBIG00000040359) #27	TFAP2D (ENSRBIG00000027596) #29	ENSRBIG00000027571 #30	DEFB112 (ENSRBIG00000006289) #31	DEFB110 (ENSRBIG00000030990) #32	DEFB113 (ENSRBIG00000038298) #33	DEFB114 (ENSRBIG00000042286) #34
Hominoidea	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Gibbon	MODERN SPECIES	14	KLHL31 (ENSNLEG00000003415) #7	GCLC (ENSNLEG00000003422) #9	ENSNLEG00000032611	ELOVL5 (ENSNLEG00000003499) #10	GCM1 (ENSNLEG00000003544) #11	FBXO9 (ENSNLEG00000003558) #12	CILK1 (ENSNLEG00000003607) #13	GSTA4 (ENSNLEG00000003648) #14	GSTA3 (ENSNLEG00000003666) #16	GSTA5 (ENSNLEG00000027295)	GSTA1 (ENSNLEG00000003684)	TMEM14A (ENSNLEG00000027983) #17	TRAM2 (ENSNLEG00000003748) #18	EFHC1 (ENSNLEG00000003764) #19	PAQR8 (ENSNLEG00000028996) #21	MCM3 (ENSNLEG00000003799) #22	IL17F (ENSNLEG00000003875) #23	ENSNLEG00000034287 #24	IL17A (ENSNLEG00000003884) #25	PKHD1 (ENSNLEG00000003892) #26	ENSNLEG00000032903	ENSNLEG00000031575	TFAP2B (ENSNLEG00000003972) #27	ENSNLEG00000029633 #28	TFAP2D (ENSNLEG00000003990) #29	ENSNLEG00000029907 #30	DEFB110 (ENSNLEG00000003996) #32	ENSNLEG00000003997	CRISP1 (ENSNLEG00000003999) #35	PGK2 (ENSNLEG00000018744) #36	CRISP3 (ENSNLEG00000004028) #37
Hominidae	ANCESTRAL SPECIES	5	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000164034.a	ENSGT00940000164034.b	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000164034.a.b	ENSGT00940000163367	ENSGT00940000164034.a.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663 #20	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000165163	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000164034.a.b	ENSGT00940000163367	ENSGT00940000164034.a.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Pan	ANCESTRAL SPECIES	5	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000164319 #16	ENSGT00940000164034.a.b	ENSGT00940000163367	ENSGT00940000164034.a.a	ENSGT00940000164034.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000148681	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00390000013931.a.a	ENSGT00390000006548.b.j.b.d	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650
Chimpanzee	MODERN SPECIES	19	ELOVL5 (ENSPTRG00000018289) #10	GCM1 (ENSPTRG00000018288) #11	FBXO9 (ENSPTRG00000018287) #12	CILK1 (ENSPTRG00000018286) #13	GSTA4 (ENSPTRG00000018285) #14	GSTA3 (ENSPTRG00000032453) #16	ENSPTRG00000048903	GSTA5 (ENSPTRG00000018284)	GSTA1 (ENSPTRG00000018280)	GSTA2 (ENSPTRG00000032454)	TMEM14A (ENSPTRG00000018279) #17	TRAM2 (ENSPTRG00000040958) #18	ENSPTRG00000044462	EFHC1 (ENSPTRG00000018277) #19	PAQR8 (ENSPTRG00000047053) #21	MCM3 (ENSPTRG00000018275) #22	IL17F (ENSPTRG00000018274) #23	ENSPTRG00000052866 #24	IL17A (ENSPTRG00000018273) #25	PKHD1 (ENSPTRG00000018272) #26	ENSPTRG00000051627	ENSPTRG00000007377	ENSPTRG00000043674 #28	TFAP2B (ENSPTRG00000018269) #27	TFAP2D (ENSPTRG00000018268) #29	ENSPTRG00000052375 #30	DEFB112 (ENSPTRG00000018267) #31	DEFB110 (ENSPTRG00000029615) #32	DEFB113 (ENSPTRG00000032456) #33	DEFB114 (ENSPTRG00000018266) #34	DEFB133 (ENSPTRG00000032458)
Bonobo	MODERN SPECIES	19	ENSPPAG00000029855	ELOVL5 (ENSPPAG00000035952) #10	GCM1 (ENSPPAG00000040280) #11	FBXO9 (ENSPPAG00000043395) #12	CILK1 (ENSPPAG00000037696) #13	GSTA4 (ENSPPAG00000033249) #14	GSTA3 (ENSPPAG00000033156) #16	ENSPPAG00000008098	GSTA5 (ENSPPAG00000039462)	GSTA2 (ENSPPAG00000034591)	TMEM14A (ENSPPAG00000035341) #17	TRAM2 (ENSPPAG00000010782) #18	ENSPPAG00000043386	EFHC1 (ENSPPAG00000009640) #19	PAQR8 (ENSPPAG00000026339) #21	MCM3 (ENSPPAG00000028475) #22	IL17F (ENSPPAG00000039561) #23	ENSPPAG00000007695 #24	IL17A (ENSPPAG00000028707) #25	PKHD1 (ENSPPAG00000040343) #26	ENSPPAG00000027898	TFAP2B (ENSPPAG00000031196) #27	TFAP2D (ENSPPAG00000038341) #29	ENSPPAG00000036979 #31	DEFB110 (ENSPPAG00000042577) #32	DEFB114 (ENSPPAG00000030543) #34	CRISP1 (ENSPPAG00000029268) #35	PGK2 (ENSPPAG00000005435) #36	CRISP3 (ENSPPAG00000041881) #37	CRISP2 (ENSPPAG00000014874)	RHAG (ENSPPAG00000034078)
Human	MODERN SPECIES	18	ELOVL5 (ENSG00000012660) #10	GCM1 (ENSG00000137270) #11	ENSG00000288646	FBXO9 (ENSG00000112146) #12	ENSG00000288614	CILK1 (ENSG00000112144) #13	GSTA4 (ENSG00000170899) #14	GSTA3 (ENSG00000174156) #16	GSTA5 (ENSG00000182793)	GSTA1 (ENSG00000243955)	GSTA2 (ENSG00000244067)	TMEM14A (ENSG00000096092) #17	TRAM2 (ENSG00000065308) #18	EFHC1 (ENSG00000096093) #19	PAQR8 (ENSG00000170915) #21	MCM3 (ENSG00000112118) #22	IL17F (ENSG00000112116) #23	IL17A (ENSG00000112115) #25	PKHD1 (ENSG00000170927) #26	TFAP2B (ENSG00000008196) #27	TFAP2D (ENSG00000008197) #29	DEFB112 (ENSG00000180872) #31	DEFB110 (ENSG00000203970) #32	DEFB113 (ENSG00000214642) #33	DEFB114 (ENSG00000177684) #34	CRISP1 (ENSG00000124812) #35	PGK2 (ENSG00000170950) #36	CRISP3 (ENSG00000096006) #37	CRISP2 (ENSG00000124490)	RHAG (ENSG00000112077)	C6orf141 (ENSG00000197261)
Gorilla	MODERN SPECIES	19	KLHL31 (ENSGGOG00000016811) #7	GCLC (ENSGGOG00000006714) #9	ELOVL5 (ENSGGOG00000011386) #10	GCM1 (ENSGGOG00000006527) #11	FBXO9 (ENSGGOG00000006520) #12	CILK1 (ENSGGOG00000000189) #13	GSTA4 (ENSGGOG00000005376) #14	ENSGGOG00000024635	GSTA5 (ENSGGOG00000027587)	GSTA2 (ENSGGOG00000026997)	TMEM14A (ENSGGOG00000000773) #17	TRAM2 (ENSGGOG00000011922) #18	ENSGGOG00000039603 #20	EFHC1 (ENSGGOG00000023504) #19	PAQR8 (ENSGGOG00000038667) #21	MCM3 (ENSGGOG00000005009) #22	IL17F (ENSGGOG00000005003) #23	ENSGGOG00000039441 #24	IL17A (ENSGGOG00000009736) #25	PKHD1 (ENSGGOG00000010943) #26	ENSGGOG00000041406	ENSGGOG00000041412	TFAP2B (ENSGGOG00000014613) #27	TFAP2D (ENSGGOG00000003510) #29	ENSGGOG00000043782 #30	ENSGGOG00000025282 #31	DEFB110 (ENSGGOG00000001322) #32	ENSGGOG00000025750 #33	ENSGGOG00000022278	CRISP1 (ENSGGOG00000010522) #35	PGK2 (ENSGGOG00000026767) #36
Orangutan	MODERN SPECIES	19	ENSPPYG00000039927	LRRC1 (ENSPPYG00000016725)	KLHL31 (ENSPPYG00000016724) #7	GCLC (ENSPPYG00000016722) #9	ELOVL5 (ENSPPYG00000016720) #10	GCM1 (ENSPPYG00000016719) #11	FBXO9 (ENSPPYG00000016718) #12	CILK1 (ENSPPYG00000016716) #13	GSTA4 (ENSPPYG00000016715) #14	GSTA3 (ENSPPYG00000016714) #16	ENSPPYG00000038815	TMEM14A (ENSPPYG00000030434) #17	TRAM2 (ENSPPYG00000016708) #18	ENSPPYG00000039550 #20	EFHC1 (ENSPPYG00000016707) #19	MCM3 (ENSPPYG00000016705) #22	IL17F (ENSPPYG00000016704) #23	IL17A (ENSPPYG00000016703) #25	PKHD1 (ENSPPYG00000016702) #26	ENSPPYG00000033183 #28	TFAP2B (ENSPPYG00000034593) #27	TFAP2D (ENSPPYG00000016699) #29	ENSPPYG00000016698 #31	ENSPPYG00000016697	DEFB113 (ENSPPYG00000016696) #33	DEFB114 (ENSPPYG00000016695) #34	ENSPPYG00000016694	CRISP1 (ENSPPYG00000016693) #35	PGK2 (ENSPPYG00000016692) #36	CRISP3 (ENSPPYG00000016691) #37	CRISP2 (ENSPPYG00000016690)
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT01050000244824.B.fb #22
Cebidae	ANCESTRAL SPECIES																	ENSGT01050000244824.B.fb #22
Marmoset	MODERN SPECIES	12	FTO (ENSCJAG00000001425)	IRX3 (ENSCJAG00000001418)	ENSCJAG00000084160	IRX5 (ENSCJAG00000012968)	IRX6 (ENSCJAG00000012962)	MMP2 (ENSCJAG00000012929)	LPCAT2 (ENSCJAG00000012902)	SLC6A2 (ENSCJAG00000012830)	ENSCJAG00000076318	ENSCJAG00000038677	GNAO1 (ENSCJAG00000012765)	AMFR (ENSCJAG00000012741)	NUDT21 (ENSCJAG00000053553)	OGFOD1 (ENSCJAG00000012630)	BBS2 (ENSCJAG00000012681)	ENSCJAG00000012664 #22	MT4 (ENSCJAG00000012675)	MT3 (ENSCJAG00000080783)	ENSCJAG00000071755	ENSCJAG00000072438	ENSCJAG00000083624	ENSCJAG00000066047	ENSCJAG00000086098	ENSCJAG00000080825	NUP93 (ENSCJAG00000012507)	SLC12A3 (ENSCJAG00000012443)	HERPUD1 (ENSCJAG00000012357)	CETP (ENSCJAG00000012329)	NLRC5 (ENSCJAG00000012266)	CPNE2 (ENSCJAG00000012206)	PSME3IP1 (ENSCJAG00000012189)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000000938.p.a	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319.a.a #16	ENSGT00940000164034	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000000938.p.a	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319.a.a #16	ENSGT00940000164034	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000000938.p.a	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319.a.a #16	ENSGT00940000164319.a.b #16	ENSGT00940000163367	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00950000183133.f
Bolivian squirrel monkey	MODERN SPECIES	49	ENSSBOG00000021715	HSD17B8 (ENSSBOG00000033905)	SLC39A7 (ENSSBOG00000027575)	RXRB (ENSSBOG00000028234)	COL11A2 (ENSSBOG00000030814)	HLA-DPB1 (ENSSBOG00000023374)	HLA-DPA1 (ENSSBOG00000026139)	HLA-DOA (ENSSBOG00000022957)	ENSSBOG00000033070	ENSSBOG00000034712	HLA-DMA (ENSSBOG00000020585)	HLA-DMB (ENSSBOG00000028499)	TRAM2 (ENSSBOG00000033153) #18	EFHC1 (ENSSBOG00000023512) #19	PAQR8 (ENSSBOG00000008561) #21	MCM3 (ENSSBOG00000019946) #22	IL17F (ENSSBOG00000022387) #23	IL17A (ENSSBOG00000031117) #25	PKHD1 (ENSSBOG00000026830) #26	ENSSBOG00000033280	TFAP2B (ENSSBOG00000021734) #27	TFAP2D (ENSSBOG00000033191) #29	DEFB112 (ENSSBOG00000031354) #31	DEFB110 (ENSSBOG00000019583) #32	DEFB113 (ENSSBOG00000035856) #33	DEFB114 (ENSSBOG00000036180) #34	ENSSBOG00000025633	CRISP1 (ENSSBOG00000031933) #35	PGK2 (ENSSBOG00000018220) #36	CRISP3 (ENSSBOG00000026829) #37	CRISP2 (ENSSBOG00000012807)
Capuchin	MODERN SPECIES	148	ELOVL5 (ENSCCAG00000037812) #10	ENSCCAG00000036125	GCM1 (ENSCCAG00000035036) #11	FBXO9 (ENSCCAG00000034208) #12	ENSCCAG00000033768	CILK1 (ENSCCAG00000036719) #13	GSTA4 (ENSCCAG00000021314) #14	ENSCCAG00000030512 #15	ENSCCAG00000024288 #16	ENSCCAG00000003496 #16	TMEM14A (ENSCCAG00000035958) #17	TRAM2 (ENSCCAG00000023806) #18	EFHC1 (ENSCCAG00000016309) #19	PAQR8 (ENSCCAG00000007857) #21	ENSCCAG00000032332	MCM3 (ENSCCAG00000034476) #22	IL17F (ENSCCAG00000031579) #23	ENSCCAG00000024543	C17orf58 (ENSCCAG00000037327)	BPTF (ENSCCAG00000025806)	ENSCCAG00000000617	ENSCCAG00000030090	NOL11 (ENSCCAG00000021153)	PITPNC1 (ENSCCAG00000032031)	ENSCCAG00000035221	PSMD12 (ENSCCAG00000033167)	ENSCCAG00000004672	ENSCCAG00000025885
Marmoset	MODERN SPECIES	16	ELOVL5 (ENSCJAG00000011119) #10	GCM1 (ENSCJAG00000079175) #11	FBXO9 (ENSCJAG00000042701) #12	CILK1 (ENSCJAG00000011214) #13	GSTA4 (ENSCJAG00000011268) #14	ENSCJAG00000034823 #15	ENSCJAG00000060605 #16	ENSCJAG00000066217	TMEM14A (ENSCJAG00000011309) #17	ENSCJAG00000082568	TRAM2 (ENSCJAG00000011314) #18	EFHC1 (ENSCJAG00000011346) #19	PAQR8 (ENSCJAG00000011379) #21	ENSCJAG00000080195	ENSCJAG00000080533	ENSCJAG00000011389 #22	IL17F (ENSCJAG00000043579) #23	IL17A (ENSCJAG00000011432) #25	PKHD1 (ENSCJAG00000011434) #26	ENSCJAG00000078173	TFAP2B (ENSCJAG00000011561) #27	TFAP2D (ENSCJAG00000011580) #29	ENSCJAG00000083090	DEFB112 (ENSCJAG00000052292) #31	DEFB110 (ENSCJAG00000076216) #32	DEFB113 (ENSCJAG00000011605) #33	DEFB114 (ENSCJAG00000011608) #34	ENSCJAG00000011612	CRISP1 (ENSCJAG00000011614) #35	PGK2 (ENSCJAG00000022394) #36	CRISP2 (ENSCJAG00000047298)
Mas night monkey	MODERN SPECIES	993	ELOVL5 (ENSANAG00000027703) #10	ENSANAG00000031805	GCM1 (ENSANAG00000018757) #11	FBXO9 (ENSANAG00000037929) #12	CILK1 (ENSANAG00000018446) #13	GSTA4 (ENSANAG00000037353) #14	ENSANAG00000014954 #15	ENSANAG00000037760 #16	ENSANAG00000016846 #16	TMEM14A (ENSANAG00000021933) #17	ENSANAG00000030800	TRAM2 (ENSANAG00000024793) #18	EFHC1 (ENSANAG00000032647) #19	ENSANAG00000030513	PAQR8 (ENSANAG00000003283) #21	MCM3 (ENSANAG00000024257) #22	IL17F (ENSANAG00000036118) #23	IL17A (ENSANAG00000036235) #25	PKHD1 (ENSANAG00000022549) #26	TFAP2B (ENSANAG00000019812) #27	TFAP2D (ENSANAG00000026393) #29	DEFB112 (ENSANAG00000036019) #31	DEFB110 (ENSANAG00000027463) #32	DEFB113 (ENSANAG00000028898) #33	DEFB114 (ENSANAG00000028900) #34	ENSANAG00000030784	CRISP1 (ENSANAG00000033292) #35	PGK2 (ENSANAG00000011649) #36	CRISP3 (ENSANAG00000035593) #37	CRISP2 (ENSANAG00000022988)	RHAG (ENSANAG00000024380)
Tarsier	MODERN SPECIES	3009															PAQR8 (ENSTSYG00000010045) #21	MCM3 (ENSTSYG00000012610) #22	IL17F (ENSTSYG00000014142) #23	IL17A (ENSTSYG00000011180) #25
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.e.b	ENSGT00940000163367	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.e.b	ENSGT00940000163367	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00910000147043 #30	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629
Mouse lemur	MODERN SPECIES	28	ENSMICG00000011320	ELOVL5 (ENSMICG00000004038) #10	ENSMICG00000042951	GCM1 (ENSMICG00000030765) #11	FBXO9 (ENSMICG00000008924) #12	CILK1 (ENSMICG00000038462) #13	GSTA4 (ENSMICG00000005858) #14	ENSMICG00000029781 #15	ENSMICG00000041824	ENSMICG00000001561	ENSMICG00000026922	ENSMICG00000042743 #17	TRAM2 (ENSMICG00000032391) #18	EFHC1 (ENSMICG00000004321) #19	PAQR8 (ENSMICG00000044671) #21	MCM3 (ENSMICG00000011430) #22	IL17F (ENSMICG00000026740) #23	IL17A (ENSMICG00000043002) #25	PKHD1 (ENSMICG00000008392) #26	TFAP2B (ENSMICG00000017317) #27	TFAP2D (ENSMICG00000005507) #29	ENSMICG00000047064 #30	DEFB110 (ENSMICG00000047331) #32	DEFB113 (ENSMICG00000032756) #33	DEFB114 (ENSMICG00000044264) #34	CRISP1 (ENSMICG00000002786) #35	CRISP3 (ENSMICG00000002617) #37	CRISP2 (ENSMICG00000014964)	RHAG (ENSMICG00000008366)	ENSMICG00000046680	GLYATL3 (ENSMICG00000002636)
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000163367	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Coquerels sifaka	MODERN SPECIES	412	KLHL31 (ENSPCOG00000028812) #7	GCLC (ENSPCOG00000020387) #9	ELOVL5 (ENSPCOG00000019780) #10	GCM1 (ENSPCOG00000013341) #11	FBXO9 (ENSPCOG00000011211) #12	CILK1 (ENSPCOG00000025293) #13	GSTA4 (ENSPCOG00000024795) #14	ENSPCOG00000017536 #15	GSTA5 (ENSPCOG00000020631)	ENSPCOG00000018411	ENSPCOG00000027305	TMEM14A (ENSPCOG00000019026) #17	TRAM2 (ENSPCOG00000020466) #18	EFHC1 (ENSPCOG00000026614) #19	PAQR8 (ENSPCOG00000013953) #21	MCM3 (ENSPCOG00000014588) #22	IL17F (ENSPCOG00000018992) #23	ENSPCOG00000015611	IL17A (ENSPCOG00000021965) #25	PKHD1 (ENSPCOG00000025913) #26	TFAP2B (ENSPCOG00000019712) #27	TFAP2D (ENSPCOG00000023340) #29	ENSPCOG00000019467	DUSP26 (ENSPCOG00000023702)	RNF122 (ENSPCOG00000018082)	TTI2 (ENSPCOG00000018445)	ENSPCOG00000018065	FUT10 (ENSPCOG00000025506)	NRG1 (ENSPCOG00000015684)	WRN (ENSPCOG00000012938)	PURG (ENSPCOG00000005104)
Greater bamboo lemur	MODERN SPECIES	655									ENSPSMG00000016493	ENSPSMG00000016475	ENSPSMG00000016464	TMEM14A (ENSPSMG00000016417) #17	TRAM2 (ENSPSMG00000016397) #18	EFHC1 (ENSPSMG00000016338) #19	PAQR8 (ENSPSMG00000016211) #21	MCM3 (ENSPSMG00000016201) #22	IL17F (ENSPSMG00000016144) #23	IL17A (ENSPSMG00000016139) #25	PKHD1 (ENSPSMG00000016108) #26	TFAP2B (ENSPSMG00000015936) #27	TFAP2D (ENSPSMG00000015932) #29	ENSPSMG00000015914	DEFB113 (ENSPSMG00000015905) #33	DEFB114 (ENSPSMG00000015897) #34	CRISP1 (ENSPSMG00000015890) #35	PGK2 (ENSPSMG00000015865) #36	CRISP3 (ENSPSMG00000015857) #37	CRISP2 (ENSPSMG00000015837)	ENSPSMG00000015791	RHAG (ENSPSMG00000015777)	ENSPSMG00000015759
Bushbaby	MODERN SPECIES	150	GCLC (ENSOGAG00000007018) #9	ELOVL5 (ENSOGAG00000004272) #10	GCM1 (ENSOGAG00000007879) #11	FBXO9 (ENSOGAG00000007875) #12	CILK1 (ENSOGAG00000007868) #13	GSTA4 (ENSOGAG00000007865) #14	ENSOGAG00000031992 #15	GSTA5 (ENSOGAG00000032237)	ENSOGAG00000003726	ENSOGAG00000026926	ENSOGAG00000014699	TMEM14A (ENSOGAG00000014698) #17	TRAM2 (ENSOGAG00000011863) #18	EFHC1 (ENSOGAG00000015937) #19	PAQR8 (ENSOGAG00000027916) #21	MCM3 (ENSOGAG00000015546) #22	ENSOGAG00000015545 #23	IL17A (ENSOGAG00000015542) #25	PKHD1 (ENSOGAG00000015530) #26	ENSOGAG00000024262
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Tree shrew	MODERN SPECIES	436																MCM3 (ENSTBEG00000002019) #22	IL17F (ENSTBEG00000001700) #23	IL17A (ENSTBEG00000000474) #25
Glires	ANCESTRAL SPECIES	5	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000154526.h.i.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738
Rabbit	MODERN SPECIES	3	GCLC (ENSOCUG00000012805) #9	ELOVL5 (ENSOCUG00000011469) #10	GCM1 (ENSOCUG00000009246) #11	FBXO9 (ENSOCUG00000011388) #12	CILK1 (ENSOCUG00000027465) #13	GSTA4 (ENSOCUG00000003680) #14	ENSOCUG00000034994 #16	GSTA5 (ENSOCUG00000029486)	ENSOCUG00000012902	ENSOCUG00000038012	ENSOCUG00000012895	TRAM2 (ENSOCUG00000012094) #18	EFHC1 (ENSOCUG00000012087) #19	PAQR8 (ENSOCUG00000003946) #21	IL17F (ENSOCUG00000004271) #23	MCM3 (ENSOCUG00000004273) #22	IL17A (ENSOCUG00000004270) #25	PKHD1 (ENSOCUG00000004246) #26	TFAP2B (ENSOCUG00000025542) #27	TFAP2D (ENSOCUG00000025550) #29	DEFB110 (ENSOCUG00000015973) #32	ENSOCUG00000024437	DEFB113 (ENSOCUG00000022579) #33	DEFB114 (ENSOCUG00000032209) #34	ENSOCUG00000039348	ENSOCUG00000032803	ENSOCUG00000035733	CRISP1 (ENSOCUG00000025156) #35	CRISP3 (ENSOCUG00000012801) #37	CRISP2 (ENSOCUG00000022149)	RHAG (ENSOCUG00000016186)
Pika	MODERN SPECIES	5013										ENSOPRG00000016044	ENSOPRG00000016033	TMEM14A (ENSOPRG00000016026) #17	TRAM2 (ENSOPRG00000016017) #18	EFHC1 (ENSOPRG00000015995) #19	PAQR8 (ENSOPRG00000015992) #21	MCM3 (ENSOPRG00000015977) #22	IL17F (ENSOPRG00000015973) #23
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738
Myomorpha	ANCESTRAL SPECIES	11									ENSGT00940000154526.h.i.b	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738
Muroidea	ANCESTRAL SPECIES	42									ENSGT00940000154526.h.i.b	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00840000130532	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000163367.g.a	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000156439.k	ENSGT00940000162013 #37	ENSGT00840000130532	ENSGT00940000156439.l	ENSGT00950000182844.b.a
Cricetinae	ANCESTRAL SPECIES	28	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT01000000215862	ENSGT00940000156439.l	ENSGT00950000182844.b.a	ENSGT00390000007738	ENSGT00950000183133.f	ENSGT00390000005599
Chinese hamster chok1gshd	MODERN SPECIES	165	Fam135a (ENSCGRG00001014193)	Sdhaf4 (ENSCGRG00001020774)	Smap1 (ENSCGRG00001022239)	B3gat2 (ENSCGRG00001020528)	Ogfrl1 (ENSCGRG00001008053)	Rims1 (ENSCGRG00001019526)	ENSCGRG00001017322	Kcnq5 (ENSCGRG00001009953)	ENSCGRG00001021036	ENSCGRG00001017591	Gsta3 (ENSCGRG00001023755)	Tmem14a (ENSCGRG00001009902) #17	Tram2 (ENSCGRG00001015106) #18	Efhc1 (ENSCGRG00001022397) #19	Paqr8 (ENSCGRG00001004665) #21	Mcm3 (ENSCGRG00001009748) #22	Il17f (ENSCGRG00001020910) #23	Il17a (ENSCGRG00001015169) #25	Pkhd1 (ENSCGRG00001020061) #26	Tfap2b (ENSCGRG00001014115) #27	Tfap2d (ENSCGRG00001003273) #29	Crisp4 (ENSCGRG00001015574) #35	Pgk2 (ENSCGRG00001002124) #36	ENSCGRG00001000239 #37	ENSCGRG00001018785	Crisp2 (ENSCGRG00001007053)	Rhag (ENSCGRG00001011984)	9130008F23Rik (ENSCGRG00001006784)	Glyatl3 (ENSCGRG00001016869)	Cenpq (ENSCGRG00001010699)	Mmut (ENSCGRG00001019456)
Golden Hamster	MODERN SPECIES	649					B3gat2 (ENSMAUG00000012703)	ENSMAUG00000009953	ENSMAUG00000017764	ENSMAUG00000011817	Kcnq5 (ENSMAUG00000012668)	ENSMAUG00000013236	Gsta3 (ENSMAUG00000014278)	Tmem14a (ENSMAUG00000014884) #17	Tram2 (ENSMAUG00000001094) #18	Efhc1 (ENSMAUG00000010139) #19	Paqr8 (ENSMAUG00000011171) #21	Mcm3 (ENSMAUG00000012859) #22	Il17f (ENSMAUG00000014457) #23	Il17a (ENSMAUG00000014054) #25	Pkhd1 (ENSMAUG00000017819) #26	Tfap2b (ENSMAUG00000017922) #27	Tfap2d (ENSMAUG00000004727) #29	Defb41 (ENSMAUG00000005698) #32	Crisp4 (ENSMAUG00000007766) #35	Pgk2 (ENSMAUG00000017658) #36	ENSMAUG00000009650 #37	ENSMAUG00000017696	ENSMAUG00000010754	Crisp2 (ENSMAUG00000008482)	Rhag (ENSMAUG00000010616)	9130008F23Rik (ENSMAUG00000012110)	Glyatl3 (ENSMAUG00000013095)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a	ENSGT00940000158206 #17	ENSGT00940000166012	ENSGT00940000163367.h	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36
Prairie vole	MODERN SPECIES	135													Tram2 (ENSMOCG00000018961) #18	Efhc1 (ENSMOCG00000012258) #19	Paqr8 (ENSMOCG00000011453) #21	Mcm3 (ENSMOCG00000006791) #22	Il17f (ENSMOCG00000005401) #23	Il17a (ENSMOCG00000000135) #25	Pkhd1 (ENSMOCG00000020192) #26	Tfap2b (ENSMOCG00000015002) #27	Tfap2d (ENSMOCG00000015633) #29	Defb41 (ENSMOCG00000014245) #32	Crisp4 (ENSMOCG00000001532) #35	Pgk2 (ENSMOCG00000022317) #36
Northern American deer mouse	MODERN SPECIES	13	Foxp4 (ENSPEMG00000022403)	1700122O11Rik (ENSPEMG00000001711)	1700067P10Rik (ENSPEMG00000010780)	ENSPEMG00000031001	ENSPEMG00000029261	ENSPEMG00000004910	ENSPEMG00000023708	Gsta3 (ENSPEMG00000002630)	ENSPEMG00000015141	Tmem14a (ENSPEMG00000020022) #17	ENSPEMG00000027417	ENSPEMG00000031008	Tram2 (ENSPEMG00000006945) #18	Efhc1 (ENSPEMG00000014331) #19	Paqr8 (ENSPEMG00000019532) #21	Mcm3 (ENSPEMG00000019473) #22	Il17f (ENSPEMG00000019678) #23	Il17a (ENSPEMG00000020016) #25	Pkhd1 (ENSPEMG00000030256) #26	ENSPEMG00000026183	ENSPEMG00000029888 #28	Tfap2b (ENSPEMG00000020723) #27	Tfap2d (ENSPEMG00000012171) #29	Mmut (ENSPEMG00000009713)	Cenpq (ENSPEMG00000013318)	Glyatl3 (ENSPEMG00000000995)	9130008F23Rik (ENSPEMG00000002757)	ENSPEMG00000027470	Rhag (ENSPEMG00000003150)	Crisp2 (ENSPEMG00000022961)	ENSPEMG00000030274
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.b	ENSGT00940000154526.h.j	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT01000000215862	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00840000130532.a.a	ENSGT00840000130532.b.a.b	ENSGT00840000130532.b.a.a
Mus	ANCESTRAL SPECIES	5	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000162362 #35
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000162362 #35	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Mus_B	ANCESTRAL SPECIES	21	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000182985.b.b	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a.b	ENSGT00940000163367.g.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000162362 #35	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Mouse	MODERN SPECIES		Sdhaf4 (ENSMUSG00000026154)	Smap1 (ENSMUSG00000026155)	B3gat2 (ENSMUSG00000026156)	Ogfrl1 (ENSMUSG00000026158)	Ppp1r14bl (ENSMUSG00000073730)	Rims1 (ENSMUSG00000041670)	Kcnq5 (ENSMUSG00000028033)	Khdc1b (ENSMUSG00000085079)	Khdc1c (ENSMUSG00000041722)	Khdc1a (ENSMUSG00000067750)	Gsta3 (ENSMUSG00000025934)	Tmem14a (ENSMUSG00000025933) #17	Tram2 (ENSMUSG00000041779) #18	Efhc1 (ENSMUSG00000041809) #19	Paqr8 (ENSMUSG00000025931) #21	Mcm3 (ENSMUSG00000041859) #22	Il17f (ENSMUSG00000041872) #23	Il17a (ENSMUSG00000025929) #25	Pkhd1 (ENSMUSG00000043760) #26	Tfap2b (ENSMUSG00000025927) #27	Tfap2d (ENSMUSG00000042596) #29	Defb41 (ENSMUSG00000067773) #32	Defb18 (ENSMUSG00000073735) #33	Crisp4 (ENSMUSG00000025774) #35	Crispld1 (ENSMUSG00000025776)	Pi15 (ENSMUSG00000067780)	Gdap1 (ENSMUSG00000025777)	Jph1 (ENSMUSG00000042686)	Ly96 (ENSMUSG00000025779)	Tmem70 (ENSMUSG00000025940)	Eloc (ENSMUSG00000079658)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000182985.b.b	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000162362 #35	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Steppe mouse	MODERN SPECIES	3008											Gsta3 (ENSMSIG00000030752)	ENSMSIG00000030749	Tram2 (ENSMSIG00000030743) #18	Efhc1 (ENSMSIG00000030737) #19	Paqr8 (ENSMSIG00000030732) #21	Mcm3 (ENSMSIG00000030719) #22	Il17f (ENSMSIG00000030717) #23	Il17a (ENSMSIG00000030714) #25	Pkhd1 (ENSMSIG00000030694) #26
spretus	MODERN SPECIES		Col19a1 (MGP_SPRETEiJ_G0014804)	Col9a1 (MGP_SPRETEiJ_G0014803)	Fam135a (MGP_SPRETEiJ_G0014802)	Sdhaf4 (MGP_SPRETEiJ_G0014801)	Smap1 (MGP_SPRETEiJ_G0014800)	B3gat2 (MGP_SPRETEiJ_G0014799)	Ogfrl1 (MGP_SPRETEiJ_G0014798)	Ppp1r14bl (MGP_SPRETEiJ_G0014797)	MGP_SPRETEiJ_G0014796	Kcnq5 (MGP_SPRETEiJ_G0014795)	Gsta3 (MGP_SPRETEiJ_G0014794)	MGP_SPRETEiJ_G0014793 #17	Tram2 (MGP_SPRETEiJ_G0014792) #18	Efhc1 (MGP_SPRETEiJ_G0014791) #19	Paqr8 (MGP_SPRETEiJ_G0014790) #21	Mcm3 (MGP_SPRETEiJ_G0014789) #22	Il17f (MGP_SPRETEiJ_G0014788) #23	Il17a (MGP_SPRETEiJ_G0014787) #25	MGP_SPRETEiJ_G0014786 #26	Tfap2b (MGP_SPRETEiJ_G0014785) #27	Tfap2d (MGP_SPRETEiJ_G0014784) #29	Defb41 (MGP_SPRETEiJ_G0014783) #32	Defb18 (MGP_SPRETEiJ_G0014782) #33	Crisp4 (MGP_SPRETEiJ_G0014781) #35	Crispld1 (MGP_SPRETEiJ_G0014780)	Pi15 (MGP_SPRETEiJ_G0014779)	Gdap1 (MGP_SPRETEiJ_G0014778)	Jph1 (MGP_SPRETEiJ_G0014777)	Ly96 (MGP_SPRETEiJ_G0014776)	Tmem70 (MGP_SPRETEiJ_G0014775)	Eloc (MGP_SPRETEiJ_G0014774)
Ryukyu mouse	MODERN SPECIES		Col9a1 (MGP_CAROLIEiJ_G0013999)	Fam135a (MGP_CAROLIEiJ_G0013998)	Sdhaf4 (MGP_CAROLIEiJ_G0013997)	Smap1 (MGP_CAROLIEiJ_G0013996)	B3gat2 (MGP_CAROLIEiJ_G0013995)	Ogfrl1 (MGP_CAROLIEiJ_G0013994)	Ppp1r14bl (MGP_CAROLIEiJ_G0013993)	MGP_CAROLIEiJ_G0013992	MGP_CAROLIEiJ_G0013991	MGP_CAROLIEiJ_G0013990	MGP_CAROLIEiJ_G0013989	Tmem14a (MGP_CAROLIEiJ_G0013988) #17	Tram2 (MGP_CAROLIEiJ_G0013987) #18	Efhc1 (MGP_CAROLIEiJ_G0013986) #19	Paqr8 (MGP_CAROLIEiJ_G0013985) #21	Mcm3 (MGP_CAROLIEiJ_G0013984) #22	Il17f (MGP_CAROLIEiJ_G0013983) #23	Il17a (MGP_CAROLIEiJ_G0013982) #25	Pkhd1 (MGP_CAROLIEiJ_G0013981) #26	Tfap2b (MGP_CAROLIEiJ_G0013980) #27	Tfap2d (MGP_CAROLIEiJ_G0013979) #29	Defb41 (MGP_CAROLIEiJ_G0013978) #32	Defb18 (MGP_CAROLIEiJ_G0013977) #33	Crisp4 (MGP_CAROLIEiJ_G0013976) #35	Crispld1 (MGP_CAROLIEiJ_G0013975)	Pi15 (MGP_CAROLIEiJ_G0013974)	Gdap1 (MGP_CAROLIEiJ_G0013973)	Jph1 (MGP_CAROLIEiJ_G0013972)	Ly96 (MGP_CAROLIEiJ_G0013971)	Tmem70 (MGP_CAROLIEiJ_G0013970)	Eloc (MGP_CAROLIEiJ_G0013969)
Shrew mouse	MODERN SPECIES	18	Col19a1 (MGP_PahariEiJ_G0027249)	Col9a1 (MGP_PahariEiJ_G0027248)	Fam135a (MGP_PahariEiJ_G0027247)	Sdhaf4 (MGP_PahariEiJ_G0027246)	Smap1 (MGP_PahariEiJ_G0027245)	B3gat2 (MGP_PahariEiJ_G0027244)	MGP_PahariEiJ_G0027243	Ppp1r14bl (MGP_PahariEiJ_G0027242)	MGP_PahariEiJ_G0027241	Kcnq5 (MGP_PahariEiJ_G0027240)	Gsta3 (MGP_PahariEiJ_G0027239)	Tmem14a (MGP_PahariEiJ_G0027238) #17	Tram2 (MGP_PahariEiJ_G0027237) #18	Efhc1 (MGP_PahariEiJ_G0027236) #19	Paqr8 (MGP_PahariEiJ_G0027235) #21	Mcm3 (MGP_PahariEiJ_G0027234) #22	Il17f (MGP_PahariEiJ_G0027233) #23	Il17a (MGP_PahariEiJ_G0027232) #25	Pkhd1 (MGP_PahariEiJ_G0027231) #26	Tfap2b (MGP_PahariEiJ_G0027230) #27	Tfap2d (MGP_PahariEiJ_G0027229) #29	Defb41 (MGP_PahariEiJ_G0027228) #32	Defb18 (MGP_PahariEiJ_G0027227) #33	Crisp4 (MGP_PahariEiJ_G0027226) #35
Rat	MODERN SPECIES	19	Rims1 (ENSRNOG00000011000)	Kcnq5 (ENSRNOG00000013781)	AABR07067042.3 (ENSRNOG00000052878)	Khdc1 (ENSRNOG00000028595)	Gsta6 (ENSRNOG00000033402)	Tmem14a (ENSRNOG00000046593) #17	Rpl10a-ps1 (ENSRNOG00000063674)	Gsta1 (ENSRNOG00000013484)	ENSRNOG00000064063	Gsta3 (ENSRNOG00000056847)	Tmem14a (ENSRNOG00000013238) #17	RGD1562107 (ENSRNOG00000024755)	Tram2 (ENSRNOG00000013046) #18	Efhc1 (ENSRNOG00000042729) #19	Paqr8 (ENSRNOG00000067120) #21	Mcm3 (ENSRNOG00000012543) #22	Il17f (ENSRNOG00000012509) #23	Il17a (ENSRNOG00000012467) #25	Pkhd1 (ENSRNOG00000058742) #26	Tfap2b (ENSRNOG00000011823) #27	Tfap2d (ENSRNOG00000011642) #29	ENSRNOG00000064433	ENSRNOG00000069864	Defb16 (ENSRNOG00000066154)	Defb18 (ENSRNOG00000039650) #33	Defb49 (ENSRNOG00000039651)	Crisp1 (ENSRNOG00000013612) #35	ENSRNOG00000066520	Pgk2 (ENSRNOG00000013600) #36	Crisp3 (ENSRNOG00000013496) #37	ENSRNOG00000066672
Upper Galilee mountains blind mole rat	MODERN SPECIES	1882										ENSNGAG00000011078	ENSNGAG00000008046	ENSNGAG00000018209 #17	Tram2 (ENSNGAG00000003316) #18	Efhc1 (ENSNGAG00000015995) #19	Paqr8 (ENSNGAG00000019180) #21	Mcm3 (ENSNGAG00000009877) #22	Il17f (ENSNGAG00000019809) #23	Il17a (ENSNGAG00000003868) #25	Pkhd1 (ENSNGAG00000009481) #26	Tfap2b (ENSNGAG00000011310) #27	Tfap2d (ENSNGAG00000020572) #29	ENSNGAG00000008579	Defb18 (ENSNGAG00000009235) #33	ENSNGAG00000000040 #35	ENSNGAG00000000270 #36	ENSNGAG00000008808 #37	ENSNGAG00000000227	Rhag (ENSNGAG00000014043)	9130008F23Rik (ENSNGAG00000014630)	Glyatl3 (ENSNGAG00000017110)	Cenpq (ENSNGAG00000006423)
Lesser Egyptian jerboa	MODERN SPECIES	41	ENSJJAG00000018259	Cdc42bpb (ENSJJAG00000021480)	Tnfrsf21 (ENSJJAG00000021218)	ENSJJAG00000021681	Cd2ap (ENSJJAG00000018750)	Adgrf2 (ENSJJAG00000016491)	Adgrf4 (ENSJJAG00000022843)	Opn5 (ENSJJAG00000023915)	Ptchd4 (ENSJJAG00000012388)	ENSJJAG00000004017	Mmut (ENSJJAG00000020693)	ENSJJAG00000002394	Cenpq (ENSJJAG00000016270)	Glyatl3 (ENSJJAG00000016081)	Rhag (ENSJJAG00000017373)	Mcm3 (ENSJJAG00000019109) #22	Il17f (ENSJJAG00000020203) #23	Il17a (ENSJJAG00000003345) #25	Pkhd1 (ENSJJAG00000020101) #26	Tfap2b (ENSJJAG00000018867) #27	Tfap2d (ENSJJAG00000013114) #29	ENSJJAG00000000785 #35	ENSJJAG00000020807 #37	Pgk2 (ENSJJAG00000003644) #36	Crisp2 (ENSJJAG00000018523)	ENSJJAG00000021834	Gsta3 (ENSJJAG00000022357)	ENSJJAG00000022957 #17	Tram2 (ENSJJAG00000019249) #18	Efhc1 (ENSJJAG00000019979) #19	Paqr8 (ENSJJAG00000002669) #21
Kangaroo rat	MODERN SPECIES	363	Tinag (ENSDORG00000011595)	ENSDORG00000011594	Lrrc1 (ENSDORG00000010229)	Klhl31 (ENSDORG00000027643) #7	Gclc (ENSDORG00000026700) #9	Elovl5 (ENSDORG00000014395) #10	Gcm1 (ENSDORG00000003627) #11	Fbxo9 (ENSDORG00000003625) #12	Cilk1 (ENSDORG00000003623) #13	Gsta4 (ENSDORG00000029976) #15	ENSDORG00000029294	ENSDORG00000014473	ENSDORG00000012421 #17	Tram2 (ENSDORG00000006868) #18	Efhc1 (ENSDORG00000006864) #19	Mcm3 (ENSDORG00000006138) #22	Il17f (ENSDORG00000006136) #23	Il17a (ENSDORG00000008932) #25	Pkhd1 (ENSDORG00000002272) #26	Tfap2b (ENSDORG00000025666) #27	Tfap2d (ENSDORG00000003703) #29	ENSDORG00000028707	ENSDORG00000011420 #37	ENSDORG00000011413	Rhag (ENSDORG00000024892)	Glyatl3 (ENSDORG00000006589)	Mmut (ENSDORG00000002052)	Ptchd4 (ENSDORG00000014666)	Opn5 (ENSDORG00000007833)	Adgrf2 (ENSDORG00000007827)	Cd2ap (ENSDORG00000007826)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000163367.c.b	ENSGT00940000163367.c.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738
Alpin marmot	MODERN SPECIES	20	GCLC (ENSMMMG00000000505) #9	ELOVL5 (ENSMMMG00000000490) #10	ENSMMMG00000000473 #11	ENSMMMG00000000458	ENSMMMG00000000398 #12	CILK1 (ENSMMMG00000000307) #13	GSTA4 (ENSMMMG00000000272) #14	ENSMMMG00000000204	ENSMMMG00000000189	ENSMMMG00000000069	TMEM14A (ENSMMMG00000000009) #17	TRAM2 (ENSMMMG00000024638) #18	EFHC1 (ENSMMMG00000024637) #19	PAQR8 (ENSMMMG00000024636) #21	ENSMMMG00000024635	MCM3 (ENSMMMG00000024634) #22	IL17F (ENSMMMG00000024633) #23	IL17A (ENSMMMG00000024632) #25	PKHD1 (ENSMMMG00000024629) #26	TFAP2B (ENSMMMG00000024628) #27	ENSMMMG00000024624	DEFB114 (ENSMMMG00000024623) #34	CRISP1 (ENSMMMG00000024622) #35	ENSMMMG00000024621 #36	ENSMMMG00000024620 #36	CRISP3 (ENSMMMG00000024619) #37	CRISP2 (ENSMMMG00000024618)	ENSMMMG00000024617	RHAG (ENSMMMG00000024616)	ENSMMMG00000024615	ENSMMMG00000024614
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.i.a	ENSGT00940000163367.c.b	ENSGT00940000163367.c.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00940000162362 #35	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00390000007738	ENSGT00950000183133.f	ENSGT00390000005599
Arctic ground squirrel	MODERN SPECIES	237								ENSUPAG00010018634	ENSUPAG00010018624	ENSUPAG00010018562	TMEM14A (ENSUPAG00010018549) #17	ENSUPAG00010018545	TRAM2 (ENSUPAG00010018531) #18	EFHC1 (ENSUPAG00010018516) #19	PAQR8 (ENSUPAG00010018506) #21	MCM3 (ENSUPAG00010018473) #22	IL17F (ENSUPAG00010018464) #23	IL17A (ENSUPAG00010018457) #25	PKHD1 (ENSUPAG00010018346) #26	TFAP2B (ENSUPAG00010018310) #27	TFAP2D (ENSUPAG00010018299) #29	ENSUPAG00010018290	CRISP1 (ENSUPAG00010018274) #35
Squirrel	MODERN SPECIES	76	GCLC (ENSSTOG00000000903) #9	ENSSTOG00000015170 #10	ENSSTOG00000014763 #11	FBXO9 (ENSSTOG00000002185) #12	CILK1 (ENSSTOG00000012510) #13	GSTA4 (ENSSTOG00000012502) #14	ENSSTOG00000019919 #15	ENSSTOG00000003609	ENSSTOG00000020625	ENSSTOG00000028252	ENSSTOG00000028449	TMEM14A (ENSSTOG00000034800) #17	TRAM2 (ENSSTOG00000013535) #18	EFHC1 (ENSSTOG00000012272) #19	PAQR8 (ENSSTOG00000013049) #21	MCM3 (ENSSTOG00000001358) #22	IL17F (ENSSTOG00000002268) #23	IL17A (ENSSTOG00000008569) #25	PKHD1 (ENSSTOG00000013374) #26	TFAP2B (ENSSTOG00000025602) #27	TFAP2D (ENSSTOG00000011817) #29	DEFB110 (ENSSTOG00000033113) #32	CRISP1 (ENSSTOG00000025570) #35	CRISP3 (ENSSTOG00000033453) #37	CRISP2 (ENSSTOG00000013131)	RHAG (ENSSTOG00000001434)	ENSSTOG00000020139	ENSSTOG00000001431	GLYATL3 (ENSSTOG00000001428)	CENPQ (ENSSTOG00000001426)	MMUT (ENSSTOG00000001420)
Eurasian red squirrel	MODERN SPECIES	16	ELOVL5 (ENSSVLG00005008217) #10	GCM1 (ENSSVLG00005008319) #11	FBXO9 (ENSSVLG00005008390) #12	CILK1 (ENSSVLG00005008509) #13	GSTA4 (ENSSVLG00005008538) #14	ENSSVLG00005008575 #15	GSTA3 (ENSSVLG00005008617) #16	ENSSVLG00005008692	TMEM14A (ENSSVLG00005008760) #17	ENSSVLG00005008800	ENSSVLG00005008845	ENSSVLG00005008875	TRAM2 (ENSSVLG00005008921) #18	EFHC1 (ENSSVLG00005008978) #19	ENSSVLG00005009141	MCM3 (ENSSVLG00005009178) #22	IL17F (ENSSVLG00005009322) #23	IL17A (ENSSVLG00005009355) #25	PKHD1 (ENSSVLG00005009423) #26	ENSSVLG00005010145	TFAP2B (ENSSVLG00005010190) #27	TFAP2D (ENSSVLG00005010245) #29	DEFB110 (ENSSVLG00005010300) #32	DEFB113 (ENSSVLG00005010331) #33	ENSSVLG00005010409	CRISP1 (ENSSVLG00005010451) #35	ENSSVLG00005010557 #36	ENSSVLG00005010570 #36	CRISP3 (ENSSVLG00005010598) #37	ENSSVLG00005010778 #36	CRISP2 (ENSSVLG00005010832)
Hystricomorpha	ANCESTRAL SPECIES	41										ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000004341	ENSHGLG00000034564	ACAT2 (ENSHGLG00000006902)	ENSHGLG00000033037	WTAP (ENSHGLG00000007879)	ENSHGLG00000016518	ENSHGLG00000048454	ENSHGLG00000007131	ENSHGLG00000043320	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000035426 #17	ENSHGLG00000047464	ENSHGLG00000009261 #18	EFHC1 (ENSHGLG00000009785) #19	PAQR8 (ENSHGLG00000010601) #21	MCM3 (ENSHGLG00000016531) #22	IL17F (ENSHGLG00000017633) #23	IL17A (ENSHGLG00000014659) #25	ENSHGLG00000021226	PKHD1 (ENSHGLG00000018109) #26	ENSHGLG00000005244	TFAP2B (ENSHGLG00000008303) #27	TFAP2D (ENSHGLG00000003984) #29	ENSHGLG00000032464	ENSHGLG00000020379	DEFB110 (ENSHGLG00000004350) #32	ENSHGLG00000032826	CRISP3 (ENSHGLG00000043304) #37	ENSHGLG00000002662 #36	ENSHGLG00000002573	ENSHGLG00000002312
Hystricomorpha_a	ANCESTRAL SPECIES	46										ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	41	ENSGT00940000159781	ENSGT00390000001024	ENSGT00940000160069	ENSGT00940000155172	ENSGT00390000018879	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986	ENSGT00390000016421.b.b
Degu	DUPLICATION
Degu	MODERN SPECIES	63	ENSODEG00000019779	ERMARD (ENSODEG00000010972)	DYNLT2 (ENSODEG00000009837)	PHF10 (ENSODEG00000009105)	C6orf120 (ENSODEG00000019614)	ENSODEG00000009298	ENSODEG00000010394	THBS2 (ENSODEG00000009890)	SMOC2 (ENSODEG00000008584)	DACT2 (ENSODEG00000009034)	ENSODEG00000009677	TMEM14A (ENSODEG00000009025) #17	TRAM2 (ENSODEG00000008597) #18	EFHC1 (ENSODEG00000010266) #19	PAQR8 (ENSODEG00000008711) #21	ENSODEG00000009125 #22	IL17F (ENSODEG00000010370) #23	IL17A (ENSODEG00000010713) #25	PKHD1 (ENSODEG00000011040) #26	TFAP2B (ENSODEG00000010145) #27	ENSODEG00000009809	TFAP2D (ENSODEG00000009777) #29	CRISP2 (ENSODEG00000009452)	RHAG (ENSODEG00000010420)	MMUT (ENSODEG00000008529)	ENSODEG00000019538	BCKDHB (ENSODEG00000010271)	TENT5A (ENSODEG00000008776)	IBTK (ENSODEG00000010597)	TPBG (ENSODEG00000009537)	ENSODEG00000009092
Degu	MODERN SPECIES	139	SPNS2 (ENSODEG00000016391)	MYBBP1A (ENSODEG00000016740)	GGT6 (ENSODEG00000016629)	SMTNL2 (ENSODEG00000016870)	TEKT1 (ENSODEG00000016783)	FBXO39 (ENSODEG00000016674)	SLC13A5 (ENSODEG00000016589)	ENSODEG00000017372	ENSODEG00000016487	ENSODEG00000017470	PITPNM3 (ENSODEG00000016603)	ENSODEG00000016504	AIPL1 (ENSODEG00000016462)	WSCD1 (ENSODEG00000016638)	ENSODEG00000016653	ENSODEG00000017106 #22	ENSODEG00000017048	ENSODEG00000017171	ENSODEG00000020440	DERL2 (ENSODEG00000017040)	DHX33 (ENSODEG00000017026)	ENSODEG00000016744	RPAIN (ENSODEG00000016860)	NUP88 (ENSODEG00000017074)	RABEP1 (ENSODEG00000017178)	SCIMP (ENSODEG00000017150)	ZNF232 (ENSODEG00000016845)	ZFP3 (ENSODEG00000020398)	ENSODEG00000016994	KIF1C (ENSODEG00000017049)	INCA1 (ENSODEG00000017076)
Long-tailed chinchilla	MODERN SPECIES	118	ERMARD (ENSCLAG00000010666)	ENSCLAG00000011269	PHF10 (ENSCLAG00000012283)	C6orf120 (ENSCLAG00000013630)	WDR27 (ENSCLAG00000008515)	THBS2 (ENSCLAG00000015165)	SMOC2 (ENSCLAG00000014318)	ENSCLAG00000015281	ENSCLAG00000015569	ENSCLAG00000011232	ENSCLAG00000011460	TMEM14A (ENSCLAG00000012364) #17	TRAM2 (ENSCLAG00000012768) #18	EFHC1 (ENSCLAG00000017038) #19	PAQR8 (ENSCLAG00000017940) #21	MCM3 (ENSCLAG00000015905) #22	IL17F (ENSCLAG00000011803) #23	IL17A (ENSCLAG00000012310) #25	PKHD1 (ENSCLAG00000010173) #26	TFAP2B (ENSCLAG00000008266) #27	TFAP2D (ENSCLAG00000012034) #29	DEFB110 (ENSCLAG00000011894) #32	DEFB113 (ENSCLAG00000010106) #33	CRISP3 (ENSCLAG00000010600) #37	CRISP2 (ENSCLAG00000009665)	RHAG (ENSCLAG00000009257)	MMUT (ENSCLAG00000011186)	BCKDHB (ENSCLAG00000013713)	TENT5A (ENSCLAG00000013935)	IBTK (ENSCLAG00000008463)	UBE3D (ENSCLAG00000010406)
Guinea pig	MODERN SPECIES	12											ENSCPOG00000004186	TMEM14A (ENSCPOG00000009279) #17	TRAM2 (ENSCPOG00000034245) #18	EFHC1 (ENSCPOG00000001955) #19	PAQR8 (ENSCPOG00000039705) #21	MCM3 (ENSCPOG00000000867) #22	IL17F (ENSCPOG00000012646) #23	IL17A (ENSCPOG00000035708) #25	PKHD1 (ENSCPOG00000010473) #26	TFAP2B (ENSCPOG00000022967) #27	TFAP2D (ENSCPOG00000026397) #29	DEFB110 (ENSCPOG00000004557) #32	DEFB113 (ENSCPOG00000026683) #33	CRISP2 (ENSCPOG00000011111)	RHAG (ENSCPOG00000014678)	MMUT (ENSCPOG00000014677)	BCKDHB (ENSCPOG00000010332)	TENT5A (ENSCPOG00000033104)	IBTK (ENSCPOG00000010950)	TPBG (ENSCPOG00000002388)	UBE3D (ENSCPOG00000012708)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Eulipotyphla	ANCESTRAL SPECIES	686																ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25
Common shrew	MODERN SPECIES	936																MCM3 (ENSSARG00000013765) #22
Hedgehog	MODERN SPECIES	8898															ENSEEUG00000005180	MCM3 (ENSEEUG00000005026) #22	IL17F (ENSEEUG00000004993) #23
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Suina	ANCESTRAL SPECIES	17				ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.r	ENSGT00940000154526.h.q.a	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
Pig	MODERN SPECIES	15	ENSSSCG00000047070	ELOVL5 (ENSSSCG00000024149) #10	GCM1 (ENSSSCG00000032538) #11	FBXO9 (ENSSSCG00000002629) #12	CILK1 (ENSSSCG00000002628) #13	GSTA4 (ENSSSCG00000002627) #14	ENSSSCG00000023467 #15	ENSSSCG00000058308	ENSSSCG00000002623	GSTA1 (ENSSSCG00000052947)	TMEM14A (ENSSSCG00000002622) #17	ENSSSCG00000058149	TRAM2 (ENSSSCG00000038401) #18	EFHC1 (ENSSSCG00000002620) #19	PAQR8 (ENSSSCG00000001750) #21	MCM3 (ENSSSCG00000025488) #22	IL17F (ENSSSCG00000054125) #23	IL17A (ENSSSCG00000001748) #25	ENSSSCG00000039768	PKHD1 (ENSSSCG00000001746) #26	ENSSSCG00000056595 #28	TFAP2B (ENSSSCG00000025535) #27	TFAP2D (ENSSSCG00000001744) #29	ENSSSCG00000036460 #31	DEFB110 (ENSSSCG00000001743) #32	DEFB113 (ENSSSCG00000034490) #33	DEFB114 (ENSSSCG00000001741) #34	ENSSSCG00000031069	CRISP1 (ENSSSCG00000001739) #35	PGK2 (ENSSSCG00000001738) #36	CRISP3 (ENSSSCG00000024347) #37
Chacoan peccary	MODERN SPECIES	781	LONRF1 (ENSCWAG00000018362)	PRAG1 (ENSCWAG00000018444)	CLDN23 (ENSCWAG00000018482)	ELOVL5 (ENSCWAG00000018497) #10	GCM1 (ENSCWAG00000018558) #11	FBXO9 (ENSCWAG00000018597) #12	CILK1 (ENSCWAG00000018689) #13	GSTA4 (ENSCWAG00000018735) #14	ENSCWAG00000018798 #15	ENSCWAG00000018859	ENSCWAG00000018876	TMEM14A (ENSCWAG00000018901) #17	TRAM2 (ENSCWAG00000018920) #18	EFHC1 (ENSCWAG00000018950) #19	PAQR8 (ENSCWAG00000019013) #21	MCM3 (ENSCWAG00000019032) #22	IL17F (ENSCWAG00000019202) #23	IL17A (ENSCWAG00000007969) #25	PKHD1 (ENSCWAG00000008121) #26	ENSCWAG00000009248 #28	TFAP2B (ENSCWAG00000009267) #27	TFAP2D (ENSCWAG00000009359) #29	ENSCWAG00000009466	ENSCWAG00000009493 #33	DEFB114 (ENSCWAG00000009520) #34	ENSCWAG00000009550	CRISP1 (ENSCWAG00000009604) #35	PGK2 (ENSCWAG00000009751) #36	CRISP3 (ENSCWAG00000009771) #37	CRISP2 (ENSCWAG00000009872)	RHAG (ENSCWAG00000009972)
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000160997	ENSGT00940000155371.m.a.b.a	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000158206.p #17	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000156439
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000160997	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT01000000219458
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000160997	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000154993.f	ENSGT00940000155371.m.a.a	ENSGT00940000154993.e	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000154993.f	ENSGT00940000155371.m.a.a	ENSGT00940000154993.e	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Narwhal	MODERN SPECIES	310	ENSMMNG00015015182	ENSMMNG00015015196	ENSMMNG00015015207	HLA-DQB1 (ENSMMNG00015015225)	ELOVL5 (ENSMMNG00015015252) #10	ENSMMNG00015015268	GCM1 (ENSMMNG00015015289) #11	FBXO9 (ENSMMNG00015015321) #12	CILK1 (ENSMMNG00015015375) #13	GSTA4 (ENSMMNG00015015395) #14	ENSMMNG00015015404	ENSMMNG00015015418 #17	TRAM2 (ENSMMNG00015015438) #18	EFHC1 (ENSMMNG00015015488) #19	PAQR8 (ENSMMNG00015015528) #21	MCM3 (ENSMMNG00015015544) #22	IL17F (ENSMMNG00015015583) #23	IL17A (ENSMMNG00015015597) #25	PKHD1 (ENSMMNG00015015772) #26	ENSMMNG00015016265	TFAP2B (ENSMMNG00015016361) #27	ENSMMNG00015016422	TFAP2D (ENSMMNG00015016446) #29	CRISP1 (ENSMMNG00015016511) #35	CRISP2 (ENSMMNG00015016586)	RHAG (ENSMMNG00015016693)	ENSMMNG00015016848	ENSMMNG00015016858	CENPQ (ENSMMNG00015016873)	MMUT (ENSMMNG00015016903)	ENSMMNG00015016931
Beluga whale	MODERN SPECIES	8	HLA-DRA (ENSDLEG00000002344)	ENSDLEG00000002322	ENSDLEG00000002285	ENSDLEG00000002263	HLA-DQB1 (ENSDLEG00000002245)	ELOVL5 (ENSDLEG00000002205) #10	GCM1 (ENSDLEG00000002174) #11	FBXO9 (ENSDLEG00000002148) #12	ICK (ENSDLEG00000002133) #13	GSTA4 (ENSDLEG00000002121) #14	ENSDLEG00000002101	TMEM14A (ENSDLEG00000002084) #17	TRAM2 (ENSDLEG00000002065) #18	EFHC1 (ENSDLEG00000002046) #19	PAQR8 (ENSDLEG00000002037) #21	MCM3 (ENSDLEG00000002008) #22	IL17A (ENSDLEG00000001992) #25	ENSDLEG00000001960	PKHD1 (ENSDLEG00000001491) #26	TFAP2B (ENSDLEG00000001419) #27	ENSDLEG00000001409	TFAP2D (ENSDLEG00000001397) #29	ENSDLEG00000001355 #35	CRISP2 (ENSDLEG00000001268)	RHAG (ENSDLEG00000001216)	ENSDLEG00000001190	CENPQ (ENSDLEG00000001158)	MUT (ENSDLEG00000001129)	PTCHD4 (ENSDLEG00000001112)	OPN5 (ENSDLEG00000001084)	CD2AP (ENSDLEG00000001041)
Vaquita	MODERN SPECIES	2	ENSPSNG00000014710	ENSPSNG00000014600	ENSPSNG00000014515	HLA-DQB1 (ENSPSNG00000014402)	ENSPSNG00000014305	ELOVL5 (ENSPSNG00000014225) #10	GCM1 (ENSPSNG00000014108) #11	FBXO9 (ENSPSNG00000014029) #12	CILK1 (ENSPSNG00000013951) #13	GSTA4 (ENSPSNG00000013846) #14	ENSPSNG00000013816	ENSPSNG00000013758 #17	TRAM2 (ENSPSNG00000013712) #18	EFHC1 (ENSPSNG00000013416) #19	PAQR8 (ENSPSNG00000013353) #21	MCM3 (ENSPSNG00000013109) #22	IL17F (ENSPSNG00000013032) #23	IL17A (ENSPSNG00000012960) #25	PKHD1 (ENSPSNG00000011341) #26	TFAP2B (ENSPSNG00000011121) #27	TFAP2D (ENSPSNG00000010982) #29	ENSPSNG00000010938	CRISP1 (ENSPSNG00000010733) #35	CRISP2 (ENSPSNG00000010467)	RHAG (ENSPSNG00000010096)	ENSPSNG00000009943	CENPQ (ENSPSNG00000009856)	MMUT (ENSPSNG00000009697)	ENSPSNG00000009630	PTCHD4 (ENSPSNG00000009578)	OPN5 (ENSPSNG00000009417)
Dolphin	MODERN SPECIES	3446																MCM3 (ENSTTRG00000003714) #22	ENSTTRG00000003712 #23
Sperm whale	MODERN SPECIES	9	BTNL2 (ENSPCTG00005005240)	HLA-DRA (ENSPCTG00005005185)	ENSPCTG00005005163	FBXO9 (ENSPCTG00005004996) #12	GCM1 (ENSPCTG00005004942) #11	ELOVL5 (ENSPCTG00005004916) #10	ENSPCTG00005004880	ENSPCTG00005004822	CILK1 (ENSPCTG00005004767) #13	GSTA4 (ENSPCTG00005004750) #14	ENSPCTG00005004724	TMEM14A (ENSPCTG00005004702) #17	TRAM2 (ENSPCTG00005004651) #18	EFHC1 (ENSPCTG00005004508) #19	PAQR8 (ENSPCTG00005004467) #21	MCM3 (ENSPCTG00005004374) #22	IL17F (ENSPCTG00005004341) #23	IL17A (ENSPCTG00005004302) #25	ENSPCTG00005011885	PKHD1 (ENSPCTG00005010720) #26	TFAP2B (ENSPCTG00005010627) #27	TFAP2D (ENSPCTG00005010496) #29	ENSPCTG00005010431 #31	ENSPCTG00005010390	ENSPCTG00005010352 #33	DEFB114 (ENSPCTG00005010314) #34	DEFB133 (ENSPCTG00005010282)	CRISP1 (ENSPCTG00005010113) #35	CRISP2 (ENSPCTG00005010038)	RHAG (ENSPCTG00005009633)	ENSPCTG00005009572
Blue whale	MODERN SPECIES	2	ENSBMSG00010014110	ENSBMSG00010015021	ENSBMSG00010015089	ELOVL5 (ENSBMSG00010015116) #10	GCM1 (ENSBMSG00010015146) #11	FBXO9 (ENSBMSG00010015186) #12	CILK1 (ENSBMSG00010015250) #13	GSTA4 (ENSBMSG00010015291) #14	ENSBMSG00010015322 #15	ENSBMSG00010015367	ENSBMSG00010015390	TMEM14A (ENSBMSG00010015410) #17	TRAM2 (ENSBMSG00010015431) #18	EFHC1 (ENSBMSG00010015480) #19	PAQR8 (ENSBMSG00010015634) #21	MCM3 (ENSBMSG00010015679) #22	IL17F (ENSBMSG00010015799) #23	IL17A (ENSBMSG00010015822) #25	PKHD1 (ENSBMSG00010015888) #26	ENSBMSG00010016025	TFAP2B (ENSBMSG00010016047) #27	ENSBMSG00010016081	TFAP2D (ENSBMSG00010016123) #29	ENSBMSG00010016161	ENSBMSG00010016185 #33	DEFB114 (ENSBMSG00010016205) #34	ENSBMSG00010016221	ENSBMSG00010016251	CRISP1 (ENSBMSG00010016283) #35	PGK2 (ENSBMSG00010016360) #36	CRISP2 (ENSBMSG00010016371)
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000160997	ENSGT00940000155371.n	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000164319 #16	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000001781	ENSCHYG00000001738	ENSCHYG00000001614	ELOVL5 (ENSCHYG00000001467) #10	GCM1 (ENSCHYG00000001431) #11	FBXO9 (ENSCHYG00000001319) #12	CILK1 (ENSCHYG00000001256) #13	GSTA4 (ENSCHYG00000001213) #14	ENSCHYG00000001165 #15	ENSCHYG00000001040	TMEM14A (ENSCHYG00000000971) #17	ENSCHYG00000000961	TRAM2 (ENSCHYG00000000901) #18	EFHC1 (ENSCHYG00000000722) #19	PAQR8 (ENSCHYG00000000660) #21	MCM3 (ENSCHYG00000000583) #22	IL17F (ENSCHYG00000000554) #23	IL17A (ENSCHYG00000000544) #25	PKHD1 (ENSCHYG00000000348) #26	TFAP2B (ENSCHYG00000000256) #27	TFAP2D (ENSCHYG00000000212) #29	ENSCHYG00000000206	ENSCHYG00000000193 #31	ENSCHYG00000000185	ENSCHYG00000004622 #33	DEFB114 (ENSCHYG00000004611) #34	ENSCHYG00000004600	CRISP1 (ENSCHYG00000004574) #35	PGK2 (ENSCHYG00000004559) #36	CRISP3 (ENSCHYG00000004545) #37	CRISP2 (ENSCHYG00000004535)
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.a	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000164319 #16	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Siberian musk deer	MODERN SPECIES	355	ENSMMSG00000007817	ENSMMSG00000007750	ENSMMSG00000007625	ELOVL5 (ENSMMSG00000007510) #10	GCM1 (ENSMMSG00000007462) #11	FBXO9 (ENSMMSG00000007357) #12	CILK1 (ENSMMSG00000007320) #13	GSTA4 (ENSMMSG00000007272) #14	ENSMMSG00000007230 #15	GSTA3 (ENSMMSG00000007165) #16	ENSMMSG00000007076	TMEM14A (ENSMMSG00000007019) #17	TRAM2 (ENSMMSG00000012917) #18	EFHC1 (ENSMMSG00000012624) #19	PAQR8 (ENSMMSG00000012597) #21	MCM3 (ENSMMSG00000012469) #22	IL17F (ENSMMSG00000012453) #23	IL17A (ENSMMSG00000012428) #25	ENSMMSG00000012401	PKHD1 (ENSMMSG00000011131) #26	TFAP2B (ENSMMSG00000010960) #27	TFAP2D (ENSMMSG00000010911) #29	ENSMMSG00000010891	ENSMMSG00000010864 #33	DEFB114 (ENSMMSG00000010840) #34	ENSMMSG00000010809	CRISP1 (ENSMMSG00000010711) #35	PGK2 (ENSMMSG00000010682) #36	CRISP3 (ENSMMSG00000010609) #37	CRISP2 (ENSMMSG00000010560)	RHAG (ENSMMSG00000010283)
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000154723.b.mb.a.a	ENSGT00940000161821.d.e.a	ENSGT00940000154723.b.mb.a.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161821.d.e.a	ENSGT00940000154723.b.mb.a.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.b.b.b	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Goat	MODERN SPECIES	15	ENSCHIG00000016214	ELOVL5 (ENSCHIG00000012953) #10	GCM1 (ENSCHIG00000017917) #11	FBXO9 (ENSCHIG00000018667) #12	CILK1 (ENSCHIG00000010890) #13	GSTA4 (ENSCHIG00000016853) #14	ENSCHIG00000008471 #15	ENSCHIG00000006022	ENSCHIG00000026143	ENSCHIG00000013282	ENSCHIG00000008585	TMEM14A (ENSCHIG00000018513) #17	TRAM2 (ENSCHIG00000014597) #18	EFHC1 (ENSCHIG00000014186) #19	PAQR8 (ENSCHIG00000004272) #21	MCM3 (ENSCHIG00000020423) #22	ENSCHIG00000008358 #23	IL17A (ENSCHIG00000022239) #25	PKHD1 (ENSCHIG00000021972) #26	TFAP2B (ENSCHIG00000007665) #27	TFAP2D (ENSCHIG00000023280) #29	ENSCHIG00000008615 #31	DEFB110 (ENSCHIG00000017625) #32	DEFB114 (ENSCHIG00000020648) #34	CRISP1 (ENSCHIG00000015225) #35	ENSCHIG00000010083	ENSCHIG00000004238	PGK2 (ENSCHIG00000003650) #36	CRISP3 (ENSCHIG00000012989) #37	CRISP2 (ENSCHIG00000009328)	RHAG (ENSCHIG00000019103)
Rambouillet Sheep	MODERN SPECIES	12	ENSOARG00020021487	ELOVL5 (ENSOARG00020021349) #10	GCM1 (ENSOARG00020021293) #11	FBXO9 (ENSOARG00020021181) #12	CILK1 (ENSOARG00020021095) #13	GSTA4 (ENSOARG00020021007) #14	ENSOARG00020020938 #15	ENSOARG00020020898	ENSOARG00020020785	ENSOARG00020020565	TMEM14A (ENSOARG00020020512) #17	TRAM2 (ENSOARG00020020430) #18	ENSOARG00020020412	EFHC1 (ENSOARG00020020221) #19	PAQR8 (ENSOARG00020020203) #21	MCM3 (ENSOARG00020019991) #22	ENSOARG00020019944 #23	IL17A (ENSOARG00020019903) #25	PKHD1 (ENSOARG00020016458) #26	TFAP2B (ENSOARG00020016055) #27	TFAP2D (ENSOARG00020015981) #29	ENSOARG00020015930 #31	ENSOARG00020015886	ENSOARG00020015856 #33	DEFB114 (ENSOARG00020015818) #34	ENSOARG00020015759	CRISP1 (ENSOARG00020015573) #35	PGK2 (ENSOARG00020015502) #36	CRISP3 (ENSOARG00020015128) #37	RHAG (ENSOARG00020014891)	ENSOARG00020014845
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000161821.d.e.b.a	ENSGT00940000154723.b.nb.c.a	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
American bison	MODERN SPECIES	3345									ENSBBBG00000005545	ENSBBBG00000020535	TMEM14A (ENSBBBG00000005538) #17	TRAM2 (ENSBBBG00000020513) #18	EFHC1 (ENSBBBG00000020498) #19	PAQR8 (ENSBBBG00000000596) #21	ENSBBBG00000000602	MCM3 (ENSBBBG00000000609) #22	IL17F (ENSBBBG00000000666) #23	ENSBBBG00000000676	IL17A (ENSBBBG00000000680) #25	ENSBBBG00000000695	PKHD1 (ENSBBBG00000020399) #26	TFAP2B (ENSBBBG00000020023) #27	TFAP2D (ENSBBBG00000020011) #29	ENSBBBG00000020004	ENSBBBG00000020001 #33	DEFB114 (ENSBBBG00000005405) #34	ENSBBBG00000019989	CRISP1 (ENSBBBG00000005404) #35	PGK2 (ENSBBBG00000005127) #36	CRISP3 (ENSBBBG00000019958) #37	CRISP2 (ENSBBBG00000019922)
Bos	ANCESTRAL SPECIES	17	ENSGT00940000154723.b.mb.a.a.a	ENSGT00940000161821.c.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000154723.b.mb.a.a.a	ENSGT00940000161821.c.b	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT01090000261241	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Cow	MODERN SPECIES	15	ELOVL5 (ENSBTAG00000003359) #10	GCM1 (ENSBTAG00000008148) #11	FBXO9 (ENSBTAG00000015083) #12	CILK1 (ENSBTAG00000015590) #13	GSTA4 (ENSBTAG00000004288) #14	GSTA3 (ENSBTAG00000032642) #15	GSTA5 (ENSBTAG00000037949)	GSTA1 (ENSBTAG00000021516)	ENSBTAG00000025485	GSTA2 (ENSBTAG00000006546)	TMEM14A (ENSBTAG00000005206) #17	ENSBTAG00000055192	TRAM2 (ENSBTAG00000009112) #18	EFHC1 (ENSBTAG00000017810) #19	PAQR8 (ENSBTAG00000025494) #21	MCM3 (ENSBTAG00000010721) #22	IL17F (ENSBTAG00000016835) #23	IL17A (ENSBTAG00000002150) #25	PKHD1 (ENSBTAG00000011237) #26	ENSBTAG00000053324	TFAP2B (ENSBTAG00000020426) #27	TFAP2D (ENSBTAG00000020425) #29	ENSBTAG00000046711 #31	DEFB110 (ENSBTAG00000051453) #32	DEFB113 (ENSBTAG00000054396) #33	DEFB114 (ENSBTAG00000054219) #34	CRISP1 (ENSBTAG00000008085) #35	ENSBTAG00000053808	CRISP3 (ENSBTAG00000012918) #37	CRISP2 (ENSBTAG00000002166)	RHAG (ENSBTAG00000011300)
Hybrid Bos Indicus	MODERN SPECIES	15	ENSBIXG00005004075	ENSBIXG00005023918	ENSBIXG00005024073	ELOVL5 (ENSBIXG00005024171) #10	GCM1 (ENSBIXG00005024212) #11	FBXO9 (ENSBIXG00005024313) #12	CILK1 (ENSBIXG00005024517) #13	ENSBIXG00005024575 #15	ENSBIXG00005024698	TMEM14A (ENSBIXG00005024760) #17	ENSBIXG00005024796	TRAM2 (ENSBIXG00005024830) #18	EFHC1 (ENSBIXG00005024957) #19	ENSBIXG00005024978	PAQR8 (ENSBIXG00005025001) #21	MCM3 (ENSBIXG00005025134) #22	IL17F (ENSBIXG00005007088) #23	IL17A (ENSBIXG00005025184) #25	ENSBIXG00005025213	PKHD1 (ENSBIXG00005026553) #26	TFAP2B (ENSBIXG00005026756) #27	TFAP2D (ENSBIXG00005026782) #29	ENSBIXG00005026805 #31	ENSBIXG00005006615	ENSBIXG00005026837 #33	DEFB114 (ENSBIXG00005026856) #34	ENSBIXG00005026869	CRISP1 (ENSBIXG00005004613) #35	PGK2 (ENSBIXG00005026974) #36	CRISP3 (ENSBIXG00005027026) #37	CRISP2 (ENSBIXG00005004644)
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.b.a	ENSGT00940000154723.b.mb.a.a.a	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000154526.h.m.b.a	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00970000198301	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00900000143290	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Wild yak	MODERN SPECIES	853											TMEM14A (ENSBMUG00000021104) #17	TRAM2 (ENSBMUG00000021123) #18	EFHC1 (ENSBMUG00000021212) #19	PAQR8 (ENSBMUG00000021229) #21	ENSBMUG00000021239	MCM3 (ENSBMUG00000021258) #22	IL17F (ENSBMUG00000021272) #23	IL17A (ENSBMUG00000021282) #25	ENSBMUG00000021309
Domestic yak	MODERN SPECIES	16	ENSBGRG00000019125	ENSBGRG00000019169	HLA-DQB1 (ENSBGRG00000019265)	ELOVL5 (ENSBGRG00000019509) #10	GCM1 (ENSBGRG00000019628) #11	FBXO9 (ENSBGRG00000019692) #12	CILK1 (ENSBGRG00000019840) #13	GSTA4 (ENSBGRG00000019949) #14	ENSBGRG00000020093	TMEM14A (ENSBGRG00000020421) #17	TRAM2 (ENSBGRG00000020480) #18	EFHC1 (ENSBGRG00000020698) #19	ENSBGRG00000020825	PAQR8 (ENSBGRG00000020850) #21	ENSBGRG00000020869	MCM3 (ENSBGRG00000020908) #22	ENSBGRG00000021331 #23	ENSBGRG00000021362 #25	PKHD1 (ENSBGRG00000021566) #26	ENSBGRG00000023198	TFAP2B (ENSBGRG00000023229) #27	TFAP2D (ENSBGRG00000023390) #29	ENSBGRG00000023509 #31	ENSBGRG00000023539	ENSBGRG00000023558 #33	DEFB114 (ENSBGRG00000023574) #34	ENSBGRG00000023617	CRISP1 (ENSBGRG00000023658) #35	PGK2 (ENSBGRG00000023754) #36	CRISP3 (ENSBGRG00000023771) #37	ENSBGRG00000023897
Camelidae	ANCESTRAL SPECIES	13	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Arabian camel	MODERN SPECIES	12	KLHL31 (ENSCDRG00005013321) #7	GCLC (ENSCDRG00005012966) #9	ELOVL5 (ENSCDRG00005012827) #10	GCM1 (ENSCDRG00005012750) #11	FBXO9 (ENSCDRG00005012262) #12	CILK1 (ENSCDRG00005012148) #13	GSTA4 (ENSCDRG00005012092) #14	ENSCDRG00005012038 #15	ENSCDRG00005011762	ENSCDRG00005011698	ENSCDRG00005011642 #17	TRAM2 (ENSCDRG00005011552) #18	EFHC1 (ENSCDRG00005011151) #19	PAQR8 (ENSCDRG00005011116) #21	ENSCDRG00005011086	MCM3 (ENSCDRG00005010811) #22	IL17F (ENSCDRG00005010775) #23	IL17A (ENSCDRG00005010750) #25	PKHD1 (ENSCDRG00005009579) #26	TFAP2B (ENSCDRG00005009426) #27	TFAP2D (ENSCDRG00005009248) #29	ENSCDRG00005009210	ENSCDRG00005009165 #33	DEFB114 (ENSCDRG00005009130) #34	ENSCDRG00005009079	CRISP1 (ENSCDRG00005008884) #35	PGK2 (ENSCDRG00005008847) #36	ENSCDRG00005019362	CRISP3 (ENSCDRG00005019335) #37	CRISP2 (ENSCDRG00005019315)	RHAG (ENSCDRG00005018599)
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000164319 #16	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00940000167568	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Greater horseshoe bat	MODERN SPECIES	21	MLIP (ENSRFEG00010012806)	LRRC1 (ENSRFEG00010012721)	KLHL31 (ENSRFEG00010012687) #7	GCLC (ENSRFEG00010011982) #9	ELOVL5 (ENSRFEG00010011860) #10	GCM1 (ENSRFEG00010011767) #11	FBXO9 (ENSRFEG00010011690) #12	CILK1 (ENSRFEG00010011638) #13	GSTA4 (ENSRFEG00010011544) #14	ENSRFEG00010011511 #15	ENSRFEG00010011486	TMEM14A (ENSRFEG00010011433) #17	TRAM2 (ENSRFEG00010011364) #18	EFHC1 (ENSRFEG00010011237) #19	PAQR8 (ENSRFEG00010011220) #21	MCM3 (ENSRFEG00010010927) #22	IL17F (ENSRFEG00010010852) #23	IL17A (ENSRFEG00010010796) #25	PKHD1 (ENSRFEG00010009512) #26	ENSRFEG00010009444	TFAP2B (ENSRFEG00010009189) #27	TFAP2D (ENSRFEG00010009088) #29	ENSRFEG00010009052	DEFB113 (ENSRFEG00010009018) #33	DEFB114 (ENSRFEG00010008975) #34	ENSRFEG00010008951	CRISP1 (ENSRFEG00010008812) #35	PGK2 (ENSRFEG00010008789) #36	CRISP3 (ENSRFEG00010008695) #37	CRISP2 (ENSRFEG00010008622)	ENSRFEG00010008592
Microbat	MODERN SPECIES	1048	ENSMLUG00000011240 #9	ELOVL5 (ENSMLUG00000015489) #10	GCM1 (ENSMLUG00000002762) #11	FBXO9 (ENSMLUG00000002752) #12	CILK1 (ENSMLUG00000002739) #13	GSTA4 (ENSMLUG00000002733) #14	ENSMLUG00000030329 #15	ENSMLUG00000025719	ENSMLUG00000029046	ENSMLUG00000010177	TMEM14A (ENSMLUG00000030435) #17	ENSMLUG00000023726	TRAM2 (ENSMLUG00000013636) #18	EFHC1 (ENSMLUG00000013628) #19	PAQR8 (ENSMLUG00000001768) #21	MCM3 (ENSMLUG00000001752) #22	IL17F (ENSMLUG00000001744) #23	IL17A (ENSMLUG00000001736) #25	PKHD1 (ENSMLUG00000014592) #26	TFAP2B (ENSMLUG00000016209) #27	TFAP2D (ENSMLUG00000005054) #29	ENSMLUG00000015666 #31	ENSMLUG00000025685	DEFB110 (ENSMLUG00000006294) #32	DEFB113 (ENSMLUG00000025016) #33	DEFB114 (ENSMLUG00000011206) #34	CRISP1 (ENSMLUG00000017580) #35	CRISP3 (ENSMLUG00000002126) #37	ENSMLUG00000026053	ENSMLUG00000010302	RHAG (ENSMLUG00000012875)
Megabat	MODERN SPECIES	4032																MCM3 (ENSPVAG00000010177) #22	IL17F (ENSPVAG00000010176) #23	IL17A (ENSPVAG00000010174) #25
Equus	ANCESTRAL SPECIES	10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.u.b	ENSGT00940000154526.h.u.a.a.a	ENSGT00940000154526.h.u.a.b.a.b	ENSGT00940000164319 #16	ENSGT00940000154526.h.v	ENSGT00940000158206 #17	ENSGT00940000165202.C.l	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Donkey	MODERN SPECIES	28	FBXO9 (ENSEASG00005019722) #12	CILK1 (ENSEASG00005019720) #13	GSTA4 (ENSEASG00005019714) #14	ENSEASG00005019712 #15	ENSEASG00005027189	ENSEASG00005024056	ENSEASG00005030146	ENSEASG00005004299	ENSEASG00005024395	ENSEASG00005027355	ENSEASG00005028323 #17	ENSEASG00005033157	ENSEASG00005004245	TRAM2 (ENSEASG00005004236) #18	EFHC1 (ENSEASG00005004217) #19	MCM3 (ENSEASG00005004205) #22	IL17F (ENSEASG00005029310) #23	IL17A (ENSEASG00005004197) #25	PKHD1 (ENSEASG00005004167) #26	ENSEASG00005026197	ENSEASG00005004154 #28	TFAP2B (ENSEASG00005004150) #27	TFAP2D (ENSEASG00005004143) #29	DEFB110 (ENSEASG00005028434) #32	DEFB113 (ENSEASG00005004132) #33	DEFB114 (ENSEASG00005025998) #34	CRISP1 (ENSEASG00005004126) #35	PGK2 (ENSEASG00005033787) #36	CRISP3 (ENSEASG00005004119) #37	CRISP2 (ENSEASG00005004114)	ENSEASG00005004108
Horse	MODERN SPECIES	12	ENSECAG00000053489	ENSECAG00000051447	GSTA3 (ENSECAG00000030691)	ENSECAG00000055342	ENSECAG00000059890	ENSECAG00000039093	ENSECAG00000033172 #16	ENSECAG00000046735	ENSECAG00000044907	ENSECAG00000052505	TMEM14A (ENSECAG00000015579) #17	ENSECAG00000030805	TRAM2 (ENSECAG00000010916) #18	EFHC1 (ENSECAG00000008434) #19	PAQR8 (ENSECAG00000005594) #21	MCM3 (ENSECAG00000020506) #22	ENSECAG00000031935 #23	IL17A (ENSECAG00000038266) #25	PKHD1 (ENSECAG00000022699) #26	ENSECAG00000046206	TFAP2B (ENSECAG00000015046) #27	TFAP2D (ENSECAG00000012285) #29	ENSECAG00000032228 #31	DEFB110 (ENSECAG00000058073) #32	DEFB113 (ENSECAG00000033376) #33	DEFB114 (ENSECAG00000040842) #34	CRISP1 (ENSECAG00000011049) #35	PGK2 (ENSECAG00000003389) #36	CRISP2 (ENSECAG00000006482)	ENSECAG00000019920	RHAG (ENSECAG00000012957)
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT01040000243268	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510
Ursidae	ANCESTRAL SPECIES	35	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT01040000243268	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a
Ursus	ANCESTRAL SPECIES	28	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h.y.a	ENSGT00940000154526.h.y.b	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f
American black bear	MODERN SPECIES	4937																MCM3 (ENSUAMG00000019018) #22	IL17F (ENSUAMG00000019017) #23	IL17A (ENSUAMG00000019016) #25
Polar bear	MODERN SPECIES	174	KLHL31 (ENSUMAG00000004157) #7	GCLC (ENSUMAG00000004165) #9	ELOVL5 (ENSUMAG00000004173) #10	GCM1 (ENSUMAG00000004179) #11	FBXO9 (ENSUMAG00000004188) #12	CILK1 (ENSUMAG00000004198) #13	GSTA4 (ENSUMAG00000004218) #14	ENSUMAG00000004224 #15	ENSUMAG00000004238	ENSUMAG00000004271	ENSUMAG00000004280	TMEM14A (ENSUMAG00000004281) #17	TRAM2 (ENSUMAG00000004285) #18	EFHC1 (ENSUMAG00000004342) #19	PAQR8 (ENSUMAG00000004353) #21	MCM3 (ENSUMAG00000004355) #22	IL17F (ENSUMAG00000004365) #23	IL17A (ENSUMAG00000004369) #25	PKHD1 (ENSUMAG00000004400) #26	TFAP2B (ENSUMAG00000004537) #27	TFAP2D (ENSUMAG00000004569) #29	DEFB110 (ENSUMAG00000004590) #32	DEFB113 (ENSUMAG00000004594) #33	DEFB114 (ENSUMAG00000004596) #34	CRISP1 (ENSUMAG00000004606) #35	PGK2 (ENSUMAG00000004614) #36	CRISP3 (ENSUMAG00000004620) #37	CRISP2 (ENSUMAG00000004625)	RHAG (ENSUMAG00000004639)	ENSUMAG00000004674	GLYATL3 (ENSUMAG00000004931)
Giant Panda	MODERN SPECIES	10	ENSAMEG00000029587	LRRC1 (ENSAMEG00000005818)	KLHL31 (ENSAMEG00000005814) #7	GCLC (ENSAMEG00000005766) #9	ELOVL5 (ENSAMEG00000005760) #10	GCM1 (ENSAMEG00000005755) #11	FBXO9 (ENSAMEG00000005714) #12	CILK1 (ENSAMEG00000005669) #13	GSTA4 (ENSAMEG00000005658) #14	ENSAMEG00000005598 #15	ENSAMEG00000002320	TMEM14A (ENSAMEG00000002373) #17	TRAM2 (ENSAMEG00000008465) #18	EFHC1 (ENSAMEG00000008516) #19	PAQR8 (ENSAMEG00000019263) #21	MCM3 (ENSAMEG00000008540) #22	IL17F (ENSAMEG00000025810) #23	IL17A (ENSAMEG00000025948) #25	PKHD1 (ENSAMEG00000008599) #26	ENSAMEG00000029833 #28	TFAP2B (ENSAMEG00000008680) #27	TFAP2D (ENSAMEG00000008744) #29	ENSAMEG00000028632	ENSAMEG00000008748 #31	ENSAMEG00000024830	DEFB113 (ENSAMEG00000008753) #33	DEFB114 (ENSAMEG00000008754) #34	ENSAMEG00000031410	CRISP1 (ENSAMEG00000030508) #35	PGK2 (ENSAMEG00000019293) #36	CRISP3 (ENSAMEG00000008761) #37
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778.d #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000163367	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT01040000243268	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f.d
Ferret	MODERN SPECIES	328	MLIP (ENSMPUG00000008821)	LRRC1 (ENSMPUG00000008840)	KLHL31 (ENSMPUG00000008851) #7	GCLC (ENSMPUG00000008858) #9	ELOVL5 (ENSMPUG00000008865) #10	GCM1 (ENSMPUG00000008870) #11	FBXO9 (ENSMPUG00000008879) #12	CILK1 (ENSMPUG00000008895) #13	ENSMPUG00000008911 #14	ENSMPUG00000008918 #15	ENSMPUG00000008923	ENSMPUG00000008935 #17	TRAM2 (ENSMPUG00000008954) #18	EFHC1 (ENSMPUG00000008966) #19	PAQR8 (ENSMPUG00000008975) #21	MCM3 (ENSMPUG00000008986) #22	ENSMPUG00000008998 #23	IL17A (ENSMPUG00000009002) #25	PKHD1 (ENSMPUG00000009027) #26	TFAP2B (ENSMPUG00000009084) #27	TFAP2D (ENSMPUG00000009095) #29	ENSMPUG00000009106	CRISP1 (ENSMPUG00000009126) #35	PGK2 (ENSMPUG00000009179) #36	CRISP3 (ENSMPUG00000009188) #37	CRISP2 (ENSMPUG00000009206)	RHAG (ENSMPUG00000009226)	ENSMPUG00000009246	ENSMPUG00000009342
American mink	MODERN SPECIES	140	KLHL31 (ENSNVIG00000008175) #7	GCLC (ENSNVIG00000008195) #9	ELOVL5 (ENSNVIG00000008437) #10	GCM1 (ENSNVIG00000008468) #11	FBXO9 (ENSNVIG00000008485) #12	CILK1 (ENSNVIG00000008499) #13	ENSNVIG00000008538 #14	GSTA5 (ENSNVIG00000008573) #15	ENSNVIG00000008592	GSTA5 (ENSNVIG00000008633)	ENSNVIG00000008670	TMEM14A (ENSNVIG00000008776) #17	TRAM2 (ENSNVIG00000008831) #18	EFHC1 (ENSNVIG00000008855) #19	MPRB (ENSNVIG00000008871) #21	MCM3 (ENSNVIG00000008873) #22	IL17F (ENSNVIG00000008918) #23
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778.a.a.a #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00390000011908 #9	ENSGT00950000182891.a.a.b.a.b.a	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000009040.f	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778.a.a.a #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00950000182844.b.a	ENSGT00940000162510
Dingo	MODERN SPECIES	276	ENSCAFG00020013338	ELOVL5 (ENSCAFG00020013335) #10	GCM1 (ENSCAFG00020013333) #11	ENSCAFG00020013324	FBXO9 (ENSCAFG00020013321) #12	CILK1 (ENSCAFG00020013302) #13	ENSCAFG00020013292 #14	ENSCAFG00020013287 #15	ENSCAFG00020013286	ENSCAFG00020013267	ENSCAFG00020013223	TMEM14A (ENSCAFG00020013218) #17	TRAM2 (ENSCAFG00020013215) #18	EFHC1 (ENSCAFG00020013152) #19	PAQR8 (ENSCAFG00020013138) #21	MCM3 (ENSCAFG00020013128) #22	IL17F (ENSCAFG00020013124) #23	IL17A (ENSCAFG00020013118) #25	ENSCAFG00020013110	ENSCAFG00020013106	ENSCAFG00020013095 #26	ENSCAFG00020013074	TFAP2B (ENSCAFG00020013037) #27	TFAP2D (ENSCAFG00020013014) #29	ENSCAFG00020012997 #31	DEFB110 (ENSCAFG00020012995) #32	DEFB113 (ENSCAFG00020012992) #33	DEFB114 (ENSCAFG00020012990) #34	CRISP1 (ENSCAFG00020012976) #35	PGK2 (ENSCAFG00020012973) #36	CRISP3 (ENSCAFG00020012950) #37
Dog	MODERN SPECIES	3	ENSCAFG00845010216	ELOVL5 (ENSCAFG00845010176) #10	GCM1 (ENSCAFG00845010149) #11	ENSCAFG00845010095	FBXO9 (ENSCAFG00845010007) #12	CILK1 (ENSCAFG00845009901) #13	GSTA4 (ENSCAFG00845009775) #14	ENSCAFG00845009716 #15	ENSCAFG00845009638	ENSCAFG00845009595	ENSCAFG00845009512 #17	ENSCAFG00845009462	TRAM2 (ENSCAFG00845009321) #18	EFHC1 (ENSCAFG00845009042) #19	PAQR8 (ENSCAFG00845008976) #21	MCM3 (ENSCAFG00845008858) #22	ENSCAFG00845008815 #23	ENSCAFG00845008776 #25	PKHD1 (ENSCAFG00845007749) #26	TFAP2B (ENSCAFG00845007336) #27	TFAP2D (ENSCAFG00845007225) #29	DEFB112 (ENSCAFG00845007163) #31	DEFB110 (ENSCAFG00845007134) #32	DEFB113 (ENSCAFG00845007099) #33	DEFB114 (ENSCAFG00845007058) #34	ENSCAFG00845006978 #35	PGK2 (ENSCAFG00845006942) #36	CRISP2 (ENSCAFG00845006782) #37	RHAG (ENSCAFG00845006661)	ENSCAFG00845006583	ENSCAFG00845006548
Red fox	MODERN SPECIES	7	GCLC (ENSVVUG00000000995) #9	ENSVVUG00000000947	ENSVVUG00000000903	ELOVL5 (ENSVVUG00000000875) #10	GCM1 (ENSVVUG00000000853) #11	FBXO9 (ENSVVUG00000000847) #12	ICK (ENSVVUG00000000836) #13	GSTA4 (ENSVVUG00000000802) #14	ENSVVUG00000000787 #15	GSTA3 (ENSVVUG00000000776) #16	ENSVVUG00000000107	ENSVVUG00000000047 #17	TRAM2 (ENSVVUG00000000039) #18	EFHC1 (ENSVVUG00000000034) #19	PAQR8 (ENSVVUG00000000031) #21	MCM3 (ENSVVUG00000000023) #22	ENSVVUG00000000020 #23	IL17A (ENSVVUG00000029390) #25	PKHD1 (ENSVVUG00000029354) #26	TFAP2B (ENSVVUG00000029350) #27	TFAP2D (ENSVVUG00000029349) #29	ENSVVUG00000029343 #31	DEFB110 (ENSVVUG00000029342) #32	DEFB113 (ENSVVUG00000029341) #33	DEFB114 (ENSVVUG00000029340) #34	CRISP1 (ENSVVUG00000029339) #35	PGK2 (ENSVVUG00000029337) #36	CRISP2 (ENSVVUG00000029335)	RHAG (ENSVVUG00000029332)	ENSVVUG00000029330	GLYATL3 (ENSVVUG00000029329)
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00910000147043 #30	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439
Tiger	MODERN SPECIES	502	LRRC1 (ENSPTIG00000016682)	KLHL31 (ENSPTIG00000015573) #7	GCLC (ENSPTIG00000012154) #9	ELOVL5 (ENSPTIG00000010022) #10	GCM1 (ENSPTIG00000008977) #11	FBXO9 (ENSPTIG00000006392) #12	CILK1 (ENSPTIG00000005233) #13	GSTA4 (ENSPTIG00000001771) #14	ENSPTIG00000019692 #15	ENSPTIG00000019425	ENSPTIG00000012893	TMEM14A (ENSPTIG00000012513) #17	TRAM2 (ENSPTIG00000011782) #18	EFHC1 (ENSPTIG00000020087) #19	PAQR8 (ENSPTIG00000006353) #21	MCM3 (ENSPTIG00000014984) #22	ENSPTIG00000014469 #23	IL17A (ENSPTIG00000013074) #25	PKHD1 (ENSPTIG00000016269) #26	TFAP2B (ENSPTIG00000015692) #27	TFAP2D (ENSPTIG00000014790) #29	ENSPTIG00000014718 #30	DEFB110 (ENSPTIG00000013917) #32	DEFB113 (ENSPTIG00000013601) #33	DEFB114 (ENSPTIG00000013188) #34	ENSPTIG00000013176	CRISP1 (ENSPTIG00000010800) #35	PGK2 (ENSPTIG00000005933) #36	CRISP3 (ENSPTIG00000008183) #37	CRISP2 (ENSPTIG00000007728)	RHAG (ENSPTIG00000006917)
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00910000147043 #30	ENSGT00390000006761 #32	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00940000162362 #35	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37
leopard	MODERN SPECIES	30	KLHL31 (ENSPPRG00000008171) #7	GCLC (ENSPPRG00000008679) #9	ELOVL5 (ENSPPRG00000008980) #10	GCM1 (ENSPPRG00000009556) #11	FBXO9 (ENSPPRG00000009682) #12	CILK1 (ENSPPRG00000009939) #13	GSTA4 (ENSPPRG00000010076) #14	ENSPPRG00000010128 #15	ENSPPRG00000012459	ENSPPRG00000012829	ENSPPRG00000012997	TMEM14A (ENSPPRG00000013164) #17	TRAM2 (ENSPPRG00000013374) #18	EFHC1 (ENSPPRG00000017929) #19	PAQR8 (ENSPPRG00000014367) #21	MCM3 (ENSPPRG00000025020) #22	IL17F (ENSPPRG00000025009) #23	IL17A (ENSPPRG00000024972) #25	PKHD1 (ENSPPRG00000024687) #26	ENSPPRG00000014502 #28	TFAP2B (ENSPPRG00000024586) #27	TFAP2D (ENSPPRG00000024559) #29	ENSPPRG00000024419 #30	DEFB110 (ENSPPRG00000024311) #32	DEFB113 (ENSPPRG00000024287) #33	DEFB114 (ENSPPRG00000024231) #34	ENSPPRG00000014518	ENSPPRG00000023824 #35	PGK2 (ENSPPRG00000014531) #36	CRISP3 (ENSPPRG00000023334) #37	CRISP2 (ENSPPRG00000023239)
lion	MODERN SPECIES	5	KLHL31 (ENSPLOG00000004028) #7	GCLC (ENSPLOG00000003932) #9	ELOVL5 (ENSPLOG00000003839) #10	GCM1 (ENSPLOG00000003807) #11	FBXO9 (ENSPLOG00000003770) #12	CILK1 (ENSPLOG00000003736) #13	GSTA4 (ENSPLOG00000003698) #14	ENSPLOG00000003677 #15	ENSPLOG00000003654	ENSPLOG00000003645	ENSPLOG00000003623	TMEM14A (ENSPLOG00000003538) #17	TRAM2 (ENSPLOG00000003508) #18	EFHC1 (ENSPLOG00000003384) #19	PAQR8 (ENSPLOG00000003284) #21	MCM3 (ENSPLOG00000003222) #22	IL17F (ENSPLOG00000003194) #23	IL17A (ENSPLOG00000003180) #25	PKHD1 (ENSPLOG00000002992) #26	TFAP2B (ENSPLOG00000002864) #27	TFAP2D (ENSPLOG00000002828) #29	ENSPLOG00000002805	ENSPLOG00000002784	DEFB113 (ENSPLOG00000002765) #33	DEFB114 (ENSPLOG00000002746) #34	ENSPLOG00000002728	CRISP1 (ENSPLOG00000002615) #35	PGK2 (ENSPLOG00000002586) #36	CRISP3 (ENSPLOG00000002561) #37	CRISP2 (ENSPLOG00000002530)	RHAG (ENSPLOG00000002490)
Cat	MODERN SPECIES	236	KLHL31 (ENSFCAG00000014353) #7	GCLC (ENSFCAG00000022171) #9	ELOVL5 (ENSFCAG00000000586) #10	GCM1 (ENSFCAG00000035631) #11	FBXO9 (ENSFCAG00000029612) #12	CILK1 (ENSFCAG00000005238) #13	GSTA4 (ENSFCAG00000036046) #14	ENSFCAG00000024966 #15	ENSFCAG00000049404	ENSFCAG00000005236	ENSFCAG00000034807	TMEM14A (ENSFCAG00000025366) #17	TRAM2 (ENSFCAG00000002975) #18	EFHC1 (ENSFCAG00000011487) #19	PAQR8 (ENSFCAG00000031260) #21	MCM3 (ENSFCAG00000026755) #22	IL17F (ENSFCAG00000008513) #23	IL17A (ENSFCAG00000033485) #25	PKHD1 (ENSFCAG00000009219) #26	TFAP2B (ENSFCAG00000015482) #27	TFAP2D (ENSFCAG00000003435) #29	DEFB112 (ENSFCAG00000010863) #31	DEFB110 (ENSFCAG00000024655) #32	DEFB113 (ENSFCAG00000038240) #33	DEFB114 (ENSFCAG00000039120) #34	ENSFCAG00000045877	CRISP1 (ENSFCAG00000002580) #35	PGK2 (ENSFCAG00000025078) #36	CRISP3 (ENSFCAG00000028647) #37	RHAG (ENSFCAG00000001258)	ENSFCAG00000051234
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00400000023306 #33	ENSGT00390000016155 #34	ENSGT00400000023650	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a
Xenarthra	ANCESTRAL SPECIES	656												ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26
Sloth	MODERN SPECIES	1166																MCM3 (ENSCHOG00000005508) #22
Armadillo	MODERN SPECIES	2088												ENSDNOG00000044229 #17	TRAM2 (ENSDNOG00000004095) #18	EFHC1 (ENSDNOG00000012190) #19	PAQR8 (ENSDNOG00000005176) #21	MCM3 (ENSDNOG00000007714) #22	IL17F (ENSDNOG00000039389) #23	IL17A (ENSDNOG00000011858) #25	PKHD1 (ENSDNOG00000014976) #26
Afrotheria	ANCESTRAL SPECIES	24	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00400000023306 #33	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00390000007738	ENSGT00950000183133.f
Afrotheria_a	ANCESTRAL SPECIES	23	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000162778 #14	ENSGT00940000161750 #15	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00410000029004 #31	ENSGT00400000023306 #33	ENSGT00390000008820.e.a #36	ENSGT00940000162013 #37	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00390000007738	ENSGT00950000183133.f
Elephant	MODERN SPECIES	1	KLHL31 (ENSLAFG00000003844) #7	GCLC (ENSLAFG00000018430) #9	ELOVL5 (ENSLAFG00000018020) #10	GCM1 (ENSLAFG00000012093) #11	FBXO9 (ENSLAFG00000012088) #12	CILK1 (ENSLAFG00000005014) #13	GSTA4 (ENSLAFG00000005012) #14	ENSLAFG00000031171 #15	ENSLAFG00000031720	ENSLAFG00000027205	ENSLAFG00000026604	TMEM14A (ENSLAFG00000001644) #17	TRAM2 (ENSLAFG00000005516) #18	EFHC1 (ENSLAFG00000005509) #19	PAQR8 (ENSLAFG00000009293) #21	MCM3 (ENSLAFG00000010584) #22	IL17F (ENSLAFG00000002150) #23	IL17A (ENSLAFG00000001544) #25	ENSLAFG00000031836	ENSLAFG00000012699 #26	ENSLAFG00000032031 #26	ENSLAFG00000030680	TFAP2B (ENSLAFG00000027209) #27	TFAP2D (ENSLAFG00000006172) #29	ENSLAFG00000016703 #31	DEFB113 (ENSLAFG00000020991) #33	PGK2 (ENSLAFG00000008546) #36	ENSLAFG00000000995 #37	CRISP2 (ENSLAFG00000005361)	ENSLAFG00000031706	RHAG (ENSLAFG00000004728)
Hyrax	MODERN SPECIES	1061																MCM3 (ENSPCAG00000006957) #22	ENSPCAG00000006944 #23
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	10058																ENSETEG00000008204 #22
Tenrec	MODERN SPECIES	1380																ENSETEG00000015458 #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00390000002428.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000161750 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000161750 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Diprotodontia	ANCESTRAL SPECIES	37	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000161750 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Diprotodontia_a	ANCESTRAL SPECIES	36	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352 #7	ENSGT00390000011908 #9	ENSGT01050000244838.C.b #10	ENSGT00390000006777.a #11	ENSGT00390000014256 #12	ENSGT00940000158807 #13	ENSGT00940000161750 #15	ENSGT00940000166012.b	ENSGT00940000166012.a.a	ENSGT00940000158206.f #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162362 #35	ENSGT00940000156439	ENSGT00940000167629	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Common wonbat	MODERN SPECIES	257												ENSVURG00010013233 #18	EFHC1 (ENSVURG00010013221) #19	PAQR8 (ENSVURG00010013216) #21	ENSVURG00010013213	MCM3 (ENSVURG00010013208) #22	ENSVURG00010013204 #23	PKHD1 (ENSVURG00010013187) #26
koala	MODERN SPECIES	54	GCLC (ENSPCIG00000018141) #9	ENSPCIG00000018142	ELOVL5 (ENSPCIG00000012473) #10	GCM1 (ENSPCIG00000012474) #11	FBXO9 (ENSPCIG00000012476) #12	CILK1 (ENSPCIG00000034988) #13	ENSPCIG00000030864 #15	ENSPCIG00000032157 #15	ENSPCIG00000013280 #15	ENSPCIG00000003985	ENSPCIG00000013272	TRAM2 (ENSPCIG00000003947) #18	EFHC1 (ENSPCIG00000003906) #19	PAQR8 (ENSPCIG00000037305) #21	ENSPCIG00000014334	MCM3 (ENSPCIG00000014331) #22	ENSPCIG00000034042 #23	IL17A (ENSPCIG00000035772) #25	PKHD1 (ENSPCIG00000003504) #26	TFAP2B (ENSPCIG00000007165) #27	TFAP2D (ENSPCIG00000007171) #29	ENSPCIG00000023828	ENSPCIG00000036631 #35	ENSPCIG00000019838	CRISP2 (ENSPCIG00000019841)	ENSPCIG00000015108	ENSPCIG00000030205	RHAG (ENSPCIG00000030203)	ENSPCIG00000030199	GLYATL3 (ENSPCIG00000032282)	ENSPCIG00000012996
Wallaby	MODERN SPECIES	2089																MCM3 (ENSMEUG00000001924) #22
Tasmanian devil	MODERN SPECIES	3	TINAG (ENSSHAG00000018382)	ENSSHAG00000031578	LRRC1 (ENSSHAG00000017632)	KLHL31 (ENSSHAG00000017310) #7	GCLC (ENSSHAG00000016777) #9	ELOVL5 (ENSSHAG00000028536) #10	GCM1 (ENSSHAG00000015905) #11	FBXO9 (ENSSHAG00000015737) #12	CILK1 (ENSSHAG00000015447) #13	ENSSHAG00000028098 #15	ENSSHAG00000026000	TMEM14A (ENSSHAG00000014906) #17	TRAM2 (ENSSHAG00000014037) #18	EFHC1 (ENSSHAG00000013635) #19	PAQR8 (ENSSHAG00000031854) #21	MCM3 (ENSSHAG00000012437) #22	ENSSHAG00000032353 #23	IL17A (ENSSHAG00000012109) #25	PKHD1 (ENSSHAG00000010639) #26	TFAP2B (ENSSHAG00000012585) #27	TFAP2D (ENSSHAG00000028854) #29	ENSSHAG00000029329	ENSSHAG00000022744	ENSSHAG00000006653	ENSSHAG00000000853 #35	CRISP2 (ENSSHAG00000001880)	ENSSHAG00000023038	ENSSHAG00000031560	GLYATL3 (ENSSHAG00000004258)	ENSSHAG00000003275	MMUT (ENSSHAG00000001599)
Opossum	MODERN SPECIES	1	ENSMODG00000018795	KLHL31 (ENSMODG00000018798) #7	GCLC (ENSMODG00000018800) #9	ENSMODG00000046779	ELOVL5 (ENSMODG00000018802) #10	GCM1 (ENSMODG00000018803) #11	FBXO9 (ENSMODG00000018806) #12	CILK1 (ENSMODG00000018808) #13	ENSMODG00000018813 #15	ENSMODG00000018812 #15	ENSMODG00000018815	ENSMODG00000039234 #17	TRAM2 (ENSMODG00000018818) #18	EFHC1 (ENSMODG00000018819) #19	PAQR8 (ENSMODG00000023518) #21	MCM3 (ENSMODG00000018822) #22	ENSMODG00000018823 #23	IL17A (ENSMODG00000018824) #25	PKHD1 (ENSMODG00000018828) #26	TFAP2B (ENSMODG00000018831) #27	TFAP2D (ENSMODG00000018834) #29	ENSMODG00000018838 #35	CRISP2 (ENSMODG00000025686)	ENSMODG00000039954	ENSMODG00000018844	ENSMODG00000018846	RHAG (ENSMODG00000018849)	ENSMODG00000018850	GLYATL3 (ENSMODG00000041446)	MMUT (ENSMODG00000018855)	ENSMODG00000043712
Platypus	MODERN SPECIES	84	HTR4 (ENSOANG00000009365)	SLC26A2 (ENSOANG00000037790)	PDE6A (ENSOANG00000009367)	PPARGC1B (ENSOANG00000009368)	ARHGEF37 (ENSOANG00000039639)	CSNK1A1 (ENSOANG00000002863)	ENSOANG00000013479	PCYOX1L (ENSOANG00000013478)	GRPEL2 (ENSOANG00000011040)	ENSOANG00000042936	ENSOANG00000003988	TRAM2 (ENSOANG00000020088) #18	EFHC1 (ENSOANG00000003986) #19	PAQR8 (ENSOANG00000003985) #21	ENSOANG00000003133 #25	MCM3 (ENSOANG00000039131) #22	PKHD1 (ENSOANG00000003131) #26	TFAP2B (ENSOANG00000003130) #27	TFAP2D (ENSOANG00000003129) #29	ENSOANG00000041605	ENSOANG00000037001	ENSOANG00000046212	ENSOANG00000014322 #35	CRISP2 (ENSOANG00000032114)	ENSOANG00000029415	ENSOANG00000012923	ENSOANG00000003948	ENSOANG00000002004	ENSOANG00000012924	ENSOANG00000003950	ENSOANG00000029648
Sauria	ANCESTRAL SPECIES	1	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01040000244791	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.s	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000162362 #35	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Aves	ANCESTRAL SPECIES	10									ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Neognathae	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Anatidae	ANCESTRAL SPECIES		ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Pink-footed goose	MODERN SPECIES	47									ENSABRG00000004022	ENSABRG00000004011	ENSABRG00000004002	XKR5 (ENSABRG00000003990)	TRAM2 (ENSABRG00000003981) #18	EFHC1 (ENSABRG00000003968) #19	PAQR8 (ENSABRG00000003957) #21	MCM3 (ENSABRG00000003938) #22	ENSABRG00000003923 #23	ENSABRG00000003911 #23	PKHD1 (ENSABRG00000003777) #26	ENSABRG00000003752 #28	TFAP2B (ENSABRG00000003733) #27	TFAP2D (ENSABRG00000003701) #29	ENSABRG00000003661	CRISP2 (ENSABRG00000003618)	RHAG (ENSABRG00000003580)	ENSABRG00000003543	ENSABRG00000003534	GLYATL3 (ENSABRG00000003506)	CENPQ (ENSABRG00000003478)	MMUT (ENSABRG00000003449)	ENSABRG00000003415
Duck	MODERN SPECIES	21	CTSB (ENSAPLG00000011195)	ENSAPLG00000020811	ENSAPLG00000011923	ENSAPLG00000011932	ENSAPLG00000011572	ENSAPLG00000031088	ENSAPLG00000012251	ENSAPLG00000012287	ENSAPLG00000027595	ENSAPLG00000027564	ENSAPLG00000001297	ENSAPLG00000012580	TRAM2 (ENSAPLG00000012648) #18	EFHC1 (ENSAPLG00000012873) #19	PAQR8 (ENSAPLG00000001301) #21	MCM3 (ENSAPLG00000013058) #22	ENSAPLG00000013357 #23	ENSAPLG00000028302 #23	PKHD1 (ENSAPLG00000013410) #26	ENSAPLG00000016671 #28	TFAP2B (ENSAPLG00000013905) #27	TFAP2D (ENSAPLG00000014639) #29	CRISP3 (ENSAPLG00000014850) #37	CRISP2 (ENSAPLG00000018429)	RHAG (ENSAPLG00000015305)	ENSAPLG00000015676	ENSAPLG00000015871	TNFRSF21 (ENSAPLG00000003358)	ENSAPLG00000019835	ADGRF5 (ENSAPLG00000004634)	ENSAPLG00000004740
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710.b	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Japanese quail	MODERN SPECIES	21	ENSCJPG00005000979	ENSCJPG00005000994	AvBD10 (ENSCJPG00005001000)	AvBD9 (ENSCJPG00005001006)	ENSCJPG00005001019	ENSCJPG00005001035	ENSCJPG00005001043	AvBD1 (ENSCJPG00005001050)	AvBD5 (ENSCJPG00005001067)	ENSCJPG00005001077	ENSCJPG00005001086	XKR5 (ENSCJPG00005001097)	TRAM2 (ENSCJPG00005001100) #18	EFHC1 (ENSCJPG00005001110) #19	PAQR8 (ENSCJPG00005001120) #21	MCM3 (ENSCJPG00005001126) #22	ENSCJPG00005001135 #23	ENSCJPG00005001139 #23	PKHD1 (ENSCJPG00005001217) #26	TFAP2B (ENSCJPG00005002491) #27	TFAP2D (ENSCJPG00005002497) #29	ENSCJPG00005002501	CRISP2 (ENSCJPG00005002502)	RHAG (ENSCJPG00005002504)	ENSCJPG00005002505	ENSCJPG00005002508	CENPQ (ENSCJPG00005002511)	MMUT (ENSCJPG00005002514)	ENSCJPG00005002516	ENSCJPG00005002519	CDC5L (ENSCJPG00005002523)
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710.a	ENSGT00420000030710.b	ENSGT00530000068084	ENSGT00730000114755	ENSGT01010000224714	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Chicken	MODERN SPECIES	22	ENSGALG00010011415	AvBD11 (ENSGALG00010011435)	AvBD10 (ENSGALG00010011448)	AvBD9 (ENSGALG00010011980)	AvBD8 (ENSGALG00010011455)	AvBD7 (ENSGALG00010007851)	AvBD6 (ENSGALG00010011870)	DEFB4A (ENSGALG00010007860)	AvBD1 (ENSGALG00010007863)	AvBD3 (ENSGALG00010007870)	AvBD4 (ENSGALG00010007875)	AvBD14 (ENSGALG00010007881)	ENSGALG00010007890	EFHC1 (ENSGALG00010007897) #19	PAQR8 (ENSGALG00010007914) #21	MCM3 (ENSGALG00010007916) #22	IL17F (ENSGALG00010007919) #23	IL17A (ENSGALG00010007922) #23	PKHD1 (ENSGALG00010007934) #26	TFAP2B (ENSGALG00010007845) #27	TFAP2D (ENSGALG00010007848) #29	CRISP2 (ENSGALG00010008054) #37	CRISP2 (ENSGALG00010008061)	RHAG (ENSGALG00010008074)	CYP2AC1 (ENSGALG00010008084)	CYP2AC2 (ENSGALG00010011879)	CENPQ (ENSGALG00010008101)	MMUT (ENSGALG00010008105)	OPN5L2 (ENSGALG00010008109)	CDC5L (ENSGALG00010008120)	ENSGALG00010008124
Turkey	MODERN SPECIES	11	ENSMGAG00000020465	ENSMGAG00000014265	ENSMGAG00000018734	ENSMGAG00000014263	ENSMGAG00000014259	ENSMGAG00000014261	ENSMGAG00000019876	ENSMGAG00000014250	ENSMGAG00000014251	ENSMGAG00000014257	CRISP2 (ENSMGAG00000020479)	ENSMGAG00000014249	ENSMGAG00000017668 #29	ENSMGAG00000020296 #27	ENSMGAG00000014245 #27	ENSMGAG00000014229 #22	ENSMGAG00000014236 #23	ENSMGAG00000014238 #23	TRAM2 (ENSMGAG00000014225) #18	ENSMGAG00000014226 #19	PAQR8 (ENSMGAG00000015659) #21	ENSMGAG00000014222	ENSMGAG00000005531	ENSMGAG00000021529	ENSMGAG00000005535	ENSMGAG00000016469	ENSMGAG00000014213	ENSMGAG00000014212	ENSMGAG00000021776	ENSMGAG00000014220	ENSMGAG00000021998
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00600000085213
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.b	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT01030000235606.a.a	ENSGT01030000235606.a.b	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.a	ENSGT01030000237530	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Medium ground finch	MODERN SPECIES	80	ENSGFOG00000001513	ENSGFOG00000001508	ENSGFOG00000001498	ENSGFOG00000001489	ENSGFOG00000001483	ENSGFOG00000001478	ENSGFOG00000001472	ENSGFOG00000001465	ENSGFOG00000001460	ENSGFOG00000001454	ENSGFOG00000001448	XKR5 (ENSGFOG00000001438)	TRAM2 (ENSGFOG00000001428) #18	ENSGFOG00000001414 #19	ENSGFOG00000001399 #19	MCM3 (ENSGFOG00000001382) #22	ENSGFOG00000001374 #23	ENSGFOG00000001354 #23	PKHD1 (ENSGFOG00000001306) #26	ENSGFOG00000001279	TFAP2B (ENSGFOG00000001259) #27	TFAP2D (ENSGFOG00000001241) #29	ENSGFOG00000001233	CRISP2 (ENSGFOG00000001225)	RHAG (ENSGFOG00000001210)	ENSGFOG00000001156	CENPQ (ENSGFOG00000001131)	MMUT (ENSGFOG00000001120)	ENSGFOG00000001113	ENSGFOG00000001103	CDC5L (ENSGFOG00000001077)
Passeroidea	ANCESTRAL SPECIES		ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.a	ENSGT01030000237530	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Zebra finch	MODERN SPECIES	23	ENSTGUG00000027030	ENSTGUG00000023222	ENSTGUG00000019642	ENSTGUG00000022992	ENSTGUG00000026460	ENSTGUG00000020966	ENSTGUG00000020849	ENSTGUG00000025056	ENSTGUG00000024610	ENSTGUG00000013282	ENSTGUG00000020291	XKR5 (ENSTGUG00000024722)	TRAM2 (ENSTGUG00000013281) #18	EFHC1 (ENSTGUG00000013278) #19	PAQR8 (ENSTGUG00000020284) #21	MCM3 (ENSTGUG00000013275) #22	ENSTGUG00000013274 #23	ENSTGUG00000013272 #23	PKHD1 (ENSTGUG00000013268) #26	TFAP2B (ENSTGUG00000022691) #27	TFAP2D (ENSTGUG00000013264) #29	ENSTGUG00000013263	CRISP2 (ENSTGUG00000024271)	RHAG (ENSTGUG00000013262)	ENSTGUG00000013260	ENSTGUG00000023639	MMUT (ENSTGUG00000013257)	ENSTGUG00000013256	ENSTGUG00000023300	CDC5L (ENSTGUG00000013251)	SUPT3H (ENSTGUG00000013250)
Common canary	MODERN SPECIES	1	ENSSCAG00000014462	ENSSCAG00000014459	ENSSCAG00000014456	ENSSCAG00000014455	ENSSCAG00000014454	ENSSCAG00000014450	ENSSCAG00000014447	ENSSCAG00000014449	ENSSCAG00000014445	ENSSCAG00000014444	ENSSCAG00000014442	TRAM2 (ENSSCAG00000014440) #18	EFHC1 (ENSSCAG00000014419) #19	ENSSCAG00000014417	PAQR8 (ENSSCAG00000014415) #21	MCM3 (ENSSCAG00000014410) #22	ENSSCAG00000014404 #23	ENSSCAG00000014390 #23	PKHD1 (ENSSCAG00000014315) #26	TFAP2B (ENSSCAG00000014289) #27	TFAP2D (ENSSCAG00000014286) #29	ENSSCAG00000014279	CRISP2 (ENSSCAG00000014273)	RHAG (ENSSCAG00000014264)	ENSSCAG00000014256	CENPQ (ENSSCAG00000014246)	MMUT (ENSSCAG00000014237)	ENSSCAG00000014230	ENSSCAG00000014225	CDC5L (ENSSCAG00000014215)	SUPT3H (ENSSCAG00000014193)
Flycatcher	MODERN SPECIES	21	ENSFALG00000002479	ENSFALG00000002478	ENSFALG00000002477	ENSFALG00000002473	ENSFALG00000024522	ENSFALG00000023902	ENSFALG00000023742	ENSFALG00000027123	ENSFALG00000027745	ENSFALG00000024001	ENSFALG00000002122	ENSFALG00000025192	TRAM2 (ENSFALG00000027316) #18	EFHC1 (ENSFALG00000002100) #19	PAQR8 (ENSFALG00000014850) #21	MCM3 (ENSFALG00000002082) #22	ENSFALG00000002066 #23	ENSFALG00000002061 #23	PKHD1 (ENSFALG00000002049) #26	ENSFALG00000028076	TFAP2B (ENSFALG00000012772) #27	TFAP2D (ENSFALG00000012770) #29	ENSFALG00000012765	CRISP2 (ENSFALG00000012752)	RHAG (ENSFALG00000012740)	ENSFALG00000023033	CENPQ (ENSFALG00000012725)	MMUT (ENSFALG00000012716)	ENSFALG00000012705	ENSFALG00000025757	CDC5L (ENSFALG00000012688)
Great tit	MODERN SPECIES	22	ENSPMJG00000013029	ENSPMJG00000013028	ENSPMJG00000013027	ENSPMJG00000013026	ENSPMJG00000013025	ENSPMJG00000013024	ENSPMJG00000013023	ENSPMJG00000013022	ENSPMJG00000013021	ENSPMJG00000013020	ENSPMJG00000013019	XKR5 (ENSPMJG00000013018)	TRAM2 (ENSPMJG00000013017) #18	EFHC1 (ENSPMJG00000013016) #19	PAQR8 (ENSPMJG00000013015) #21	MCM3 (ENSPMJG00000013013) #22	ENSPMJG00000013012 #23	ENSPMJG00000013010 #23	PKHD1 (ENSPMJG00000013009) #26	TFAP2B (ENSPMJG00000013007) #27	TFAP2D (ENSPMJG00000013006) #29	ENSPMJG00000013005	ENSPMJG00000013003	CRISP2 (ENSPMJG00000013002)	RHAG (ENSPMJG00000013001)	ENSPMJG00000013000	CENPQ (ENSPMJG00000012999)	MMUT (ENSPMJG00000012998)	ENSPMJG00000012997	ENSPMJG00000012996	CDC5L (ENSPMJG00000012995)
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.a	ENSGT00960000189777	ENSGT01030000235606	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00600000085213
Golden eagle	MODERN SPECIES	6	ENSACCG00020008674	ENSACCG00020008696	ENSACCG00020008712	ENSACCG00020008727	ENSACCG00020008737	ENSACCG00020008743	ENSACCG00020008760	ENSACCG00020008771	ENSACCG00020008784	ENSACCG00020008805	ENSACCG00020008813	XKR5 (ENSACCG00020008835)	TRAM2 (ENSACCG00020008859) #18	EFHC1 (ENSACCG00020008887) #19	PAQR8 (ENSACCG00020008905) #21	MCM3 (ENSACCG00020008930) #22	ENSACCG00020008950 #23	ENSACCG00020008978 #23	PKHD1 (ENSACCG00020009046) #26	TFAP2B (ENSACCG00020009084) #27	TFAP2D (ENSACCG00020009109) #29	CRISP2 (ENSACCG00020009125)	RHAG (ENSACCG00020009143)	ENSACCG00020009158	CENPQ (ENSACCG00020009178)	MMUT (ENSACCG00020009201)	ENSACCG00020009214	ENSACCG00020009222	CDC5L (ENSACCG00020008066)	SUPT3H (ENSACCG00020008080)	RUNX2 (ENSACCG00020008097)
Kakapo	MODERN SPECIES	23	ENSSHBG00005013131	ENSSHBG00005013121	ENSSHBG00005013115	ENSSHBG00005013104	ENSSHBG00005013080	ENSSHBG00005013058	ENSSHBG00005013046	ENSSHBG00005013039	ENSSHBG00005012961	ENSSHBG00005012931	ENSSHBG00005012911	XKR5 (ENSSHBG00005012889)	TRAM2 (ENSSHBG00005012874) #18	EFHC1 (ENSSHBG00005012808) #19	PAQR8 (ENSSHBG00005012766) #21	MCM3 (ENSSHBG00005012482) #22	ENSSHBG00005012367 #23	ENSSHBG00005012349 #23	TFAP2B (ENSSHBG00005012191) #27	TFAP2D (ENSSHBG00005012161) #29	ENSSHBG00005012112	CRISP2 (ENSSHBG00005012078)	RHAG (ENSSHBG00005012046)	ENSSHBG00005012003	CENPQ (ENSSHBG00005011988)	MMUT (ENSSHBG00005011965)	ENSSHBG00005011951	ENSSHBG00005011936	CDC5L (ENSSHBG00005011911)	ENSSHBG00005011887	SUPT3H (ENSSHBG00005011873)
African ostrich	MODERN SPECIES	677								ENSSCUG00000008372	ENSSCUG00000008374	ENSSCUG00000008376	ENSSCUG00000008377	XKR5 (ENSSCUG00000008381)	TRAM2 (ENSSCUG00000008384) #18	EFHC1 (ENSSCUG00000008389) #19	PAQR8 (ENSSCUG00000008393) #21	MCM3 (ENSSCUG00000008397) #22	ENSSCUG00000008402 #23	ENSSCUG00000008406 #23	PKHD1 (ENSSCUG00000008417) #26	ENSSCUG00000008436 #28	TFAP2B (ENSSCUG00000008439) #27	TFAP2D (ENSSCUG00000008443) #29	ENSSCUG00000008446	CRISP2 (ENSSCUG00000008449)	RHAG (ENSSCUG00000008452)
Australian saltwater crocodile	MODERN SPECIES	38	ENSCPRG00005002289	CTSB (ENSCPRG00005002136)	ENSCPRG00005002116	ENSCPRG00005002114	ENSCPRG00005002090	ENSCPRG00005002086	ENSCPRG00005002079	ENSCPRG00005002071	ENSCPRG00005002069	ENSCPRG00005002060	ENSCPRG00005002057	XKR5 (ENSCPRG00005002053)	TRAM2 (ENSCPRG00005002038) #18	EFHC1 (ENSCPRG00005001978) #19	PAQR8 (ENSCPRG00005001965) #21	MCM3 (ENSCPRG00005001928) #22	ENSCPRG00005001908 #23	ENSCPRG00005001893 #23	PKHD1 (ENSCPRG00005001865) #26	ENSCPRG00005001798 #28	TFAP2B (ENSCPRG00005001794) #27	TFAP2D (ENSCPRG00005001788) #29	ENSCPRG00005001766	ENSCPRG00005001748	ENSCPRG00005001719	ENSCPRG00005001610	CRISP2 (ENSCPRG00005001568)	ENSCPRG00005001534	RHAG (ENSCPRG00005001518)	ENSCPRG00005001147	GLYATL3 (ENSCPRG00005001102)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000162013 #37	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000158680	ENSGT01030000235367	ENSGT00950000186336	ENSGT00990000212697	ENSGT00950000186370	ENSGT00980000200519	ENSGT01030000235368	ENSGT00960000192217	ENSGT00990000207928	ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Emydidae	ANCESTRAL SPECIES	8										ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Three-toed box turtle	MODERN SPECIES	15											ENSTMTG00000009872	XKR5 (ENSTMTG00000009831)	TRAM2 (ENSTMTG00000009801) #18	EFHC1 (ENSTMTG00000009658) #19	PAQR8 (ENSTMTG00000009614) #21	MCM3 (ENSTMTG00000008814) #22	ENSTMTG00000008740 #23	ENSTMTG00000008721 #23	PKHD1 (ENSTMTG00000008105) #26	TFAP2B (ENSTMTG00000008044) #27	TFAP2D (ENSTMTG00000008019) #29	ENSTMTG00000008013	CRISP3 (ENSTMTG00000007986) #37	ENSTMTG00000007961	CRISP2 (ENSTMTG00000007573)	RHAG (ENSTMTG00000007519)	GLYATL3 (ENSTMTG00000007494)	CENPQ (ENSTMTG00000007473)	MMUT (ENSTMTG00000007460)	ENSTMTG00000007443	CDC5L (ENSTMTG00000007409)
painted turtle	MODERN SPECIES	2397								ENSCPBG00000003079	ENSCPBG00000003054	ENSCPBG00000003028	ENSCPBG00000003006	XKR5 (ENSCPBG00000002982)	TRAM2 (ENSCPBG00000002965) #18	EFHC1 (ENSCPBG00000002922) #19	PAQR8 (ENSCPBG00000002902) #21	MCM3 (ENSCPBG00000002873) #22	ENSCPBG00000002473 #23	ENSCPBG00000002351 #23	ENSCPBG00000021703 #23	PKHD1 (ENSCPBG00000021692) #26	TFAP2B (ENSCPBG00000021691) #27	TFAP2D (ENSCPBG00000021688) #29	ENSCPBG00000021687	SCAMP1 (ENSCPBG00000021684)	SUPT3H (ENSCPBG00000021682)	RUNX2 (ENSCPBG00000021680)	CLIC5 (ENSCPBG00000021676)	ENPP4 (ENSCPBG00000021674)	ENPP5 (ENSCPBG00000021673)	ENSCPBG00000021672	ENSCPBG00000021668
Testudinidae	ANCESTRAL SPECIES	10										ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a	ENSGT00940000156439.r.b	ENSGT00950000182844.b.a	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738	ENSGT00940000160171
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005007717	ENSGEVG00005007734	ENSGEVG00005007754	ENSGEVG00005007768	ENSGEVG00005007821	ENSGEVG00005007835	ENSGEVG00005007854	ENSGEVG00005007864	ENSGEVG00005007883	ENSGEVG00005007902	ENSGEVG00005007927	ENSGEVG00005007962	TRAM2 (ENSGEVG00005007985) #18	EFHC1 (ENSGEVG00005008122) #19	PAQR8 (ENSGEVG00005008419) #21	MCM3 (ENSGEVG00005008431) #22	ENSGEVG00005008475 #23	ENSGEVG00005008539 #23	PKHD1 (ENSGEVG00005008582) #26	TFAP2B (ENSGEVG00005008797) #27	TFAP2D (ENSGEVG00005008838) #29	ENSGEVG00005008897	CRISP2 (ENSGEVG00005008958)	RHAG (ENSGEVG00005009014)	ENSGEVG00005009050	ENSGEVG00005009242	CENPQ (ENSGEVG00005009413)	MMUT (ENSGEVG00005009448)	ENSGEVG00005009501	ENSGEVG00005009530	CDC5L (ENSGEVG00005009562)
Abingdon island giant tortoise	MODERN SPECIES	1965						ENSCABG00000000141	ENSCABG00000000150	ENSCABG00000000159	ENSCABG00000000163	ENSCABG00000000168	XKR5 (ENSCABG00000000175)	ENSCABG00000000181	TRAM2 (ENSCABG00000000185) #18	EFHC1 (ENSCABG00000000297) #19	PAQR8 (ENSCABG00000001054) #21	MCM3 (ENSCABG00000001058) #22	ENSCABG00000001179 #23	ENSCABG00000001194 #23	PKHD1 (ENSCABG00000001229) #26
Chinese turtle	MODERN SPECIES	2172													XKR5 (ENSPSIG00000014857)	TRAM2 (ENSPSIG00000014870) #18	EFHC1 (ENSPSIG00000006183) #19	MCM3 (ENSPSIG00000006428) #22	ENSPSIG00000007604 #23	ENSPSIG00000007951 #23	ENSPSIG00000000897 #26	TFAP2B (ENSPSIG00000008002) #27	TFAP2D (ENSPSIG00000008307) #29	ENSPSIG00000008437	ENSPSIG00000008444	ENSPSIG00000008487	CRISP3 (ENSPSIG00000008972) #37	ENSPSIG00000009967	ENSPSIG00000011704	ENSPSIG00000013152	ENSPSIG00000013188 #35	RHAG (ENSPSIG00000013778)	ENSPSIG00000014061
Lepidosauria	ANCESTRAL SPECIES		ENSGT00390000010738	ENSGT00550000074922	ENSGT00940000161979.B	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a	ENSGT00940000156439.r.b	ENSGT00940000162362 #35	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.s	ENSGT00940000162013 #37	ENSGT00940000156439.r.a
Episquamata	ANCESTRAL SPECIES		ENSGT00940000179889.a	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a	ENSGT00940000162362.b #35	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.s	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a	ENSGT00940000156439.r.b	ENSGT00940000162362.a.a #35	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a.c #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.s	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002539	ENSPMRG00000002532	ENSPMRG00000002513	ENSPMRG00000002506	ENSPMRG00000002482	ENSPMRG00000002473	RHAG (ENSPMRG00000002467)	ENSPMRG00000002463	ENSPMRG00000002460	ENSPMRG00000002457 #19	TRAM2 (ENSPMRG00000002403) #18	ENSPMRG00000002354 #19	PAQR8 (ENSPMRG00000002330) #21	ENSPMRG00000002325	ENSPMRG00000002318	MCM3 (ENSPMRG00000002305) #22	IL17F (ENSPMRG00000002301) #23	PKHD1 (ENSPMRG00000007352) #26	ENSPMRG00000007318	TFAP2B (ENSPMRG00000007290) #27	TFAP2D (ENSPMRG00000007272) #29	ENSPMRG00000007258	ENSPMRG00000007239 #37	ENSPMRG00000007046	ENSPMRG00000006997	FAM161A (ENSPMRG00000006987)	CCT4 (ENSPMRG00000006964)	COMMD1 (ENSPMRG00000006951)	ENSPMRG00000006943	TMEM17 (ENSPMRG00000006917)	EHBP1 (ENSPMRG00000006897)
Argentine black and white tegu	MODERN SPECIES	54	RUNX2 (ENSSMRG00000006169)	SUPT3H (ENSSMRG00000006146)	CDC5L (ENSSMRG00000006101)	ENSSMRG00000006098	MMUT (ENSSMRG00000006094)	ENSSMRG00000006082	RHAG (ENSSMRG00000006066)	ENSSMRG00000006060	ENSSMRG00000006058 #35	CRISP3 (ENSSMRG00000006050) #37	ENSSMRG00000006037 #35	ENSSMRG00000006016	TRAM2 (ENSSMRG00000006014) #18	EFHC1 (ENSSMRG00000005996) #19	ENSSMRG00000005995 #21	MCM3 (ENSSMRG00000005991) #22	IL17F (ENSSMRG00000005978) #23	ENSSMRG00000005977	TFAP2B (ENSSMRG00000005975) #27	TFAP2D (ENSSMRG00000005974) #29	ENSSMRG00000005927	ENSSMRG00000005909	ENSSMRG00000005739	FAM161A (ENSSMRG00000005692)	CCT4 (ENSSMRG00000005614)	COMMD1 (ENSSMRG00000005611)	B3GNT2 (ENSSMRG00000005605)	ENSSMRG00000005599	TMEM17 (ENSSMRG00000005554)	EHBP1 (ENSSMRG00000005524)	OTX1 (ENSSMRG00000005510)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156406.b	ENSGT00940000179889.a	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a	ENSGT00940000162362.b #35	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439.r.a	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Elapidae	ANCESTRAL SPECIES		ENSGT00550000074922	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510.s.a.a.b	ENSGT00940000162510.s.a.b.b	ENSGT00940000162510.s.a.a.a.a.a	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013 #37	ENSGT00940000156439.r.a.d	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Indian cobra	MODERN SPECIES		MMUT (ENSNNAG00000000438)	CENPQ (ENSNNAG00000000424)	GLYATL3 (ENSNNAG00000000413)	ENSNNAG00000000401	ENSNNAG00000000364	ENSNNAG00000000271	ENSNNAG00000000238	ENSNNAG00000000234	ENSNNAG00000000226	ENSNNAG00000014629	ENSNNAG00000014612	RHAG (ENSNNAG00000014592)	TRAM2 (ENSNNAG00000014579) #18	EFHC1 (ENSNNAG00000014556) #19	PAQR8 (ENSNNAG00000014541) #21	MCM3 (ENSNNAG00000014512) #22	IL17F (ENSNNAG00000014489) #23	PKHD1 (ENSNNAG00000014363) #26	TFAP2B (ENSNNAG00000014323) #27	ENSNNAG00000014311	ENSNNAG00000014300	ENSNNAG00000014282	ENSNNAG00000014151	FAM161A (ENSNNAG00000014113)	CCT4 (ENSNNAG00000014059)	ENSNNAG00000014050	ENSNNAG00000014035	B3GNT2 (ENSNNAG00000014031)	TMEM17 (ENSNNAG00000014018)	EHBP1 (ENSNNAG00000013729)	OTX1 (ENSNNAG00000013651)
Elapidae_a	ANCESTRAL SPECIES	6							ENSGT00940000162510.s.a.a.a.a.a.b	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013.p #37	ENSGT00940000156439.r.a.d	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Acanthophiinae	ANCESTRAL SPECIES	8							ENSGT00940000162510.s.a.a.a.a.a.b	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000162013.p #37	ENSGT00940000156439.r.a.d	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Eastern brown snake	MODERN SPECIES	56									ENSPTXG00000006002	ENSPTXG00000006003	ENSPTXG00000006444	ENSPTXG00000006447	ENSPTXG00000006448	TRAM2 (ENSPTXG00000006451) #18	EFHC1 (ENSPTXG00000006452) #19	MCM3 (ENSPTXG00000006453) #22	IL17F (ENSPTXG00000006464) #23	TFAP2B (ENSPTXG00000006479) #27	TFAP2D (ENSPTXG00000006480) #29	ENSPTXG00000006481 #37	ENSPTXG00000006483	ENSPTXG00000006485	ENSPTXG00000006487	ENSPTXG00000006489	CCT4 (ENSPTXG00000006490)	COMMD1 (ENSPTXG00000006517)	B3GNT2 (ENSPTXG00000006518)	TMEM17 (ENSPTXG00000006519)	EHBP1 (ENSPTXG00000006520)	OTX1 (ENSPTXG00000006521)	ENSPTXG00000006522
Mainland tiger snake	MODERN SPECIES	177								ENSNSUG00000003326	ENSNSUG00000003324	ENSNSUG00000003319	ENSNSUG00000003318	ENSNSUG00000003316	TRAM2 (ENSNSUG00000003305) #18	EFHC1 (ENSNSUG00000003302) #19	PAQR8 (ENSNSUG00000003301) #21	MCM3 (ENSNSUG00000003293) #22	IL17F (ENSNSUG00000003284) #23	PKHD1 (ENSNSUG00000003277) #26	TFAP2B (ENSNSUG00000003274) #27	TFAP2D (ENSNSUG00000003267) #29	ENSNSUG00000003265
Blue-lipped sea krait	MODERN SPECIES	2560														EFHC1 (ENSLLTG00000001070) #19	PAQR8 (ENSLLTG00000001105) #21	MCM3 (ENSLLTG00000001151) #22
Lizard	MODERN SPECIES		MLPH (ENSACAG00000004551)	PRLH (ENSACAG00000020999)	RAB17 (ENSACAG00000004554)	ENSACAG00000004607	ENSACAG00000043473	ENSACAG00000036057	ENSACAG00000004735	COL6A2 (ENSACAG00000004843)	FTCD (ENSACAG00000004847)	SPATC1L (ENSACAG00000042410)	LSS (ENSACAG00000004914)	MCM3AP (ENSACAG00000004980)	YBEY (ENSACAG00000005066)	TRAM2 (ENSACAG00000005070) #18	EFHC1 (ENSACAG00000005118) #19	MCM3 (ENSACAG00000005146) #22	IL17F (ENSACAG00000005245) #23	TFAP2B (ENSACAG00000005251) #27	TFAP2D (ENSACAG00000005336) #29	ENSACAG00000005354	CRISP3 (ENSACAG00000005469)	FAM161A (ENSACAG00000005568)	CCT4 (ENSACAG00000005569)	ENSACAG00000034625	COMMD1 (ENSACAG00000005706)	B3GNT2 (ENSACAG00000005727)	ENSACAG00000040766	ENSACAG00000037410	ENSACAG00000037825	EHBP1 (ENSACAG00000005744)	OTX1 (ENSACAG00000005818)
tuatara	MODERN SPECIES	779											RHAG (ENSSPUG00000006919)	ENSSPUG00000006910	TRAM2 (ENSSPUG00000006859) #18	EFHC1 (ENSSPUG00000006661) #19	ENSSPUG00000006577	MCM3 (ENSSPUG00000006558) #22	ENSSPUG00000006537 #23	ENSSPUG00000006524	TNFRSF21 (ENSSPUG00000006510)	CD2AP (ENSSPUG00000006485)	ENSSPUG00000006443
Anura	ANCESTRAL SPECIES	37	ENSGT00390000018895.b	ENSGT00940000155718	ENSGT00940000165828	ENSGT00940000161371	ENSGT00940000163547	ENSGT00940000159693	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #19	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.g.b #23	ENSGT00940000156618.h #23	ENSGT00940000156618.g.a #23	ENSGT00940000160697 #26	ENSGT00900000143764 #28	ENSGT00950000182848.c.b.b.b #27	ENSGT00950000182848.d #29	ENSGT00940000156439.f.a	ENSGT00950000182844.b.a	ENSGT00940000162510.g.b
Frog	MODERN SPECIES	5	pinx1 (ENSXETG00000000688)	ENSXETG00000043976	xkr6 (ENSXETG00000000686)	mtmr9 (ENSXETG00000000685)	ENSXETG00000000682	fam167a (ENSXETG00000039457)	blk (ENSXETG00000021626)	ENSXETG00000040921	gata4 (ENSXETG00000000673)	fdft1 (ENSXETG00000033587)	ctsb (ENSXETG00000000671)	xkr5 (ENSXETG00000042442)	tram2 (ENSXETG00000044336) #18	efhc1 (ENSXETG00000000659) #19	paqr8 (ENSXETG00000046634) #21	zmcm3 (ENSXETG00000021701) #22	ENSXETG00000046398 #23	ENSXETG00000043603 #23	ENSXETG00000042645 #23	ENSXETG00000021699 #23	ENSXETG00000026914 #23	ENSXETG00000037552	pkhd1 (ENSXETG00000021681) #26	ENSXETG00000035528 #28	tfap2b (ENSXETG00000021674) #27	tfap2d (ENSXETG00000032997) #29	crisp2-like (ENSXETG00000010986)	ENSXETG00000031486	crispl (ENSXETG00000011148)	ENSXETG00000039459	crisp1.7 (ENSXETG00000011152)
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	8	CEBPD (ENSLLEG00000020717)	SPIDR (ENSLLEG00000020740)	ENSLLEG00000020944	ENSLLEG00000021255	ENSLLEG00000021488	DTNA (ENSLLEG00000021623)	ENSLLEG00000022993	NOL4 (ENSLLEG00000023036)	ENSLLEG00000023505	ASXL3 (ENSLLEG00000023522)	ENSLLEG00000023647	KLHL14 (ENSLLEG00000024189)	ENSLLEG00000024284	ENSLLEG00000024364	GAREM1 (ENSLLEG00000024387)	ENSLLEG00000024490 #22	ENSLLEG00000024739	ENSLLEG00000024904	ENSLLEG00000005699	ENSLLEG00000005946	ENSLLEG00000006001	RNF125 (ENSLLEG00000006191)	ENSLLEG00000006244	TRAPPC8 (ENSLLEG00000006292)	ENSLLEG00000006679	B4GALT6 (ENSLLEG00000006713)	ENSLLEG00000006768	DSG2 (ENSLLEG00000006964)	ENSLLEG00000007041	ENSLLEG00000007077	ENSLLEG00000007244
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000011512	ENSLLEG00000011464	ENSLLEG00000011443	ENSLLEG00000011423	ENSLLEG00000011408	ENSLLEG00000011383	CTSB (ENSLLEG00000011350)	ENSLLEG00000011320	ENSLLEG00000011229	ENSLLEG00000011181	TRAM2 (ENSLLEG00000011027) #18	EFHC1 (ENSLLEG00000010817) #19	ENSLLEG00000010782	PAQR8 (ENSLLEG00000010762) #21	ENSLLEG00000010723	MCM3 (ENSLLEG00000010258) #22	ENSLLEG00000010161 #23	ENSLLEG00000010127	ENSLLEG00000010078 #23	ENSLLEG00000010041 #23	ENSLLEG00000010009 #23	ENSLLEG00000009963 #23	ENSLLEG00000009874	ENSLLEG00000009562	ENSLLEG00000009504	ENSLLEG00000008822	NEIL2 (ENSLLEG00000008722)	ENSLLEG00000008601	BLK (ENSLLEG00000008485)	ENSLLEG00000008462	FAM167A (ENSLLEG00000008426)
Coelacanth	MODERN SPECIES	2151															PAQR8 (ENSLACG00000009123) #21	MCM3 (ENSLACG00000007689) #22	ENSLACG00000007297 #23	IL17F (ENSLACG00000007083) #23	RPL7L1 (ENSLACG00000006089)	SLC5A6 (ENSLACG00000004585)	ENSLACG00000002596
Actinopterygii	ANCESTRAL SPECIES	4	ENSGT00940000163032	ENSGT00390000014654	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.A	ENSGT00940000166976	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000159992	ENSGT00520000055578.a.a.d	ENSGT00940000166855	ENSGT00940000159556	ENSGT00940000166646	ENSGT00530000063834.e.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00950000183111.b.a	ENSGT00950000182909.b.a.a.db	ENSGT00950000182909.b.a.a.cb	ENSGT00390000000568	ENSGT01100000263524.B.b.b
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	14	SNAI2 (ENSECRG00000004405)	ube2v2 (ENSECRG00000004380)	mcm4 (ENSECRG00000006775) ##22	PRKDC (ENSECRG00000006128)	cebpd (ENSECRG00000005879)	SPIDR (ENSECRG00000005855)	ENSECRG00000005839	mapre2 (ENSECRG00000005807)	dtna (ENSECRG00000005776)	NOL4 (ENSECRG00000005742)	ENSECRG00000005722	ASXL3 (ENSECRG00000005707)	KLHL14 (ENSECRG00000005688)	ENSECRG00000005678	garem (ENSECRG00000005664)	mcm3l (ENSECRG00000005647) #22	mep1ba (ENSECRG00000005606)	ENSECRG00000005578	ENSECRG00000005562	TRAPPC8 (ENSECRG00000005471)	rpl7 (ENSECRG00000005442)	rdh10b (ENSECRG00000005338)	stau2 (ENSECRG00000005284)	ube2wa (ENSECRG00000005250)	elocb (ENSECRG00000005216)	TMEM70 (ENSECRG00000005208)	jph1b (ENSECRG00000005198)	gdap1 (ENSECRG00000005190)	pi15a (ENSECRG00000005157)	crispld1b (ENSECRG00000005123)	hnf4g (ENSECRG00000005100)
Reedfish	MODERN SPECIES	11	rnf217 (ENSECRG00000005549)	ENSECRG00000005534	ENSECRG00000005523	nkain2 (ENSECRG00000005518)	ENSECRG00000005508	ENSECRG00000005498	ENSECRG00000005493	clvs2 (ENSECRG00000005478)	smpdl3a (ENSECRG00000005461)	fabp7b (ENSECRG00000005451)	pkib (ENSECRG00000005439)	serinc1 (ENSECRG00000005417)	hebp2 (ENSECRG00000005398)	KIF25 (ENSECRG00000005392)	AFDN (ENSECRG00000005331)	mcm3 (ENSECRG00000005255) #22	ENSECRG00000005236	ENSECRG00000005229	ENSECRG00000005221	stmn4 (ENSECRG00000005217)	gpn1 (ENSECRG00000005201)	emilin1a (ENSECRG00000004841)	khk (ENSECRG00000004749)	ENSECRG00000004736	ENSECRG00000004731	rpl7l1 (ENSECRG00000004713)	slc5a6b (ENSECRG00000004696)	TCF23 (ENSECRG00000004682)	preb (ENSECRG00000004671)	ABHD1 (ENSECRG00000004646)	ctsba (ENSECRG00000004619)
Neopterygii	ANCESTRAL SPECIES	138							ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C	ENSGT00940000157136.b	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183172.C	ENSGT01030000234633.A	ENSGT00390000007458	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000018900	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT01030000235230	ENSGT00980000199001	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	283																mcm3l (ENSLOCG00000012167) #22	mep1ba (ENSLOCG00000012175)	ENSLOCG00000012183	RNF138 (ENSLOCG00000012186)	TRAPPC8 (ENSLOCG00000012192)	opn7a (ENSLOCG00000012203)
Spotted gar	MODERN SPECIES	647	cdc42bpab (ENSLOCG00000016021)	lft2 (ENSLOCG00000016018)	tmem63a (ENSLOCG00000016012)	rsph9 (ENSLOCG00000016010)	mrps18a (ENSLOCG00000016008)	vegfab (ENSLOCG00000016005)	extl3 (ENSLOCG00000016002)	ints9 (ENSLOCG00000015999)	hmbox1a (ENSLOCG00000015994)	KIF13B (ENSLOCG00000015976)	elp3 (ENSLOCG00000015972)	si:ch211-63o20.7 (ENSLOCG00000015970)	pnocb (ENSLOCG00000015967)	znf395b (ENSLOCG00000015964)	paqr8 (ENSLOCG00000017993) #21	mcm3 (ENSLOCG00000015961) #22	il17a/f2 (ENSLOCG00000015959) #23	il17a/f1 (ENSLOCG00000015957) #23	stmn4 (ENSLOCG00000015955)	gpn1 (ENSLOCG00000015949)	emilin1a (ENSLOCG00000015947)	khk (ENSLOCG00000015943)	ankef1a (ENSLOCG00000015942)	snap25b (ENSLOCG00000015938)	wdr26b (ENSLOCG00000015931)	ADCY3 (ENSLOCG00000015927)	preb (ENSLOCG00000015926)	lyplal1 (ENSLOCG00000015924)	ENSLOCG00000015923	tgfb2 (ENSLOCG00000015921)	rrp15 (ENSLOCG00000015920)
Osteoglossocephalai	ANCESTRAL SPECIES	98	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000158137.c.a	ENSGT00950000183111.b.a.a	ENSGT00950000182909.b.a.a.cb	ENSGT00950000183102.A.b.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.b	ENSGT01030000234624.a	ENSGT00940000155981	ENSGT00940000156037.a.f	ENSGT00940000156453.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354
Osteoglossiformes	ANCESTRAL SPECIES	126	ENSGT00940000158622.h	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.a.e	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b.b	ENSGT01030000234517.H.b.a	ENSGT00940000156491.a.b
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	20	ENSPKIG00000008624	SLC22A23 (ENSPKIG00000008590)	DSP (ENSPKIG00000008536)	DSP (ENSPKIG00000008493)	ENSPKIG00000008447	ENSPKIG00000008426	igfbp3 (ENSPKIG00000008313)	igfbp1a (ENSPKIG00000008217)	adcy1a (ENSPKIG00000008108)	sirt5 (ENSPKIG00000008055)	ENSPKIG00000008041	ENSPKIG00000008026	tbc1d7 (ENSPKIG00000007972)	PHLPP1 (ENSPKIG00000007909)	si:ch211-191a24.4 (ENSPKIG00000007876)	mcm3l (ENSPKIG00000007826) #22	TRAPPC8 (ENSPKIG00000007667)	ENSPKIG00000007592	B4GALT5 (ENSPKIG00000007532)	ENSPKIG00000007492	ENSPKIG00000007457	ENSPKIG00000007391	ENSPKIG00000007329	ENSPKIG00000007312	ENSPKIG00000007260	ENSPKIG00000007148	ENSPKIG00000007093	ENSPKIG00000007066	ENSPKIG00000007054	maf1b (ENSPKIG00000007008)	ENSPKIG00000006974
P. kingsleyae	MODERN SPECIES	82	cpsf2 (ENSPKIG00000021453)	NDUFB1 (ENSPKIG00000021476)	riox1 (ENSPKIG00000021498)	CRIM1 (ENSPKIG00000021580)	ENSPKIG00000021696	extl3 (ENSPKIG00000021711)	ints9 (ENSPKIG00000021742)	HMBOX1 (ENSPKIG00000021795)	KIF13B (ENSPKIG00000021846)	ENSPKIG00000021882	elp3 (ENSPKIG00000021890)	si:ch211-63o20.7 (ENSPKIG00000021912)	pnocb (ENSPKIG00000021933)	znf395b (ENSPKIG00000021950)	paqr8 (ENSPKIG00000021982) #21	mcm3 (ENSPKIG00000021999) #22	il17a/f3 (ENSPKIG00000022047) #23	stmn4 (ENSPKIG00000022059)	EMILIN1 (ENSPKIG00000022077)	ankef1a (ENSPKIG00000022097)	snap25a (ENSPKIG00000022134)	cnstb (ENSPKIG00000022184)	KIF26B (ENSPKIG00000022242)	hnrnpub (ENSPKIG00000022332)	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	10	ripk1l (ENSSFOG00015013668)	BPHL (ENSSFOG00015032944)	ENSSFOG00015013649	ENSSFOG00015013633	SLC22A23 (ENSSFOG00015013601)	DSP (ENSSFOG00015013531)	TNS3 (ENSSFOG00015013361)	igfbp3 (ENSSFOG00015030365)	igfbp1a (ENSSFOG00015025197)	adcy1a (ENSSFOG00015013194)	sirt5 (ENSSFOG00015027400)	PHACTR1 (ENSSFOG00015013145)	tbc1d7 (ENSSFOG00015013112)	PHLPP1 (ENSSFOG00015011540)	si:ch211-191a24.4 (ENSSFOG00015011524)	mcm3l (ENSSFOG00015011464) #22	TRAPPC8 (ENSSFOG00015011261)	opn7a (ENSSFOG00015011229)	B4GALT5 (ENSSFOG00015026026)	ENSSFOG00015011178	ENSSFOG00015030217	ENSSFOG00015011027	ENSSFOG00015010975	cdh2 (ENSSFOG00015030474)	aqp4 (ENSSFOG00015010438)	KCTD1 (ENSSFOG00015025639)	TAF4B (ENSSFOG00015010259)	psma8 (ENSSFOG00015010234)	SS18 (ENSSFOG00015010184)	ZNF521 (ENSSFOG00015010128)	ENSSFOG00015024307
Asian bonytongue	MODERN SPECIES		TMEM121 (ENSSFOG00015002265)	RIN3 (ENSSFOG00015002243)	SLC24A4 (ENSSFOG00015002186)	cpsf2 (ENSSFOG00015002117)	NDUFB1 (ENSSFOG00015002101)	riox1 (ENSSFOG00015002091)	extl3 (ENSSFOG00015002047)	ints9 (ENSSFOG00015001945)	HMBOX1 (ENSSFOG00015026281)	KIF13B (ENSSFOG00015001708)	ENSSFOG00015001678	elp3 (ENSSFOG00015001622)	si:ch211-63o20.7 (ENSSFOG00015001614)	pnocb (ENSSFOG00015001572)	paqr8 (ENSSFOG00015001521) #21	mcm3 (ENSSFOG00015001433) #22	il17a/f3 (ENSSFOG00015001417) #23	stmn4 (ENSSFOG00015001386)	EMILIN1 (ENSSFOG00015001373)	ankef1a (ENSSFOG00015001355)	snap25a (ENSSFOG00015001305)	cnstb (ENSSFOG00015001287)	KIF26B (ENSSFOG00015001188)	hnrnpub (ENSSFOG00015001124)	ENSSFOG00015031684	ENSSFOG00015000984	cdc42bpab (ENSSFOG00015000828)	fzd3a (ENSSFOG00015000788)	fbxo16 (ENSSFOG00015000776)	nrbp1 (ENSSFOG00015000718)	esrrga (ENSSFOG00015000691)
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	87								ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00940000166222	ENSGT00390000010872	ENSGT00940000162937.a.a	ENSGT00940000163866.a.b	ENSGT00940000162303.a.a	ENSGT00440000033640.h	ENSGT00940000156211.a.a	ENSGT00940000154573.db	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00950000183014.f.b.b.a.a	ENSGT00390000004681.a.a	ENSGT00390000003161	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	7	ENSELUG00000001984	exoc2 (ENSELUG00000002012)	foxq1b (ENSELUG00000001117)	ENSELUG00000002020	foxc1b (ENSELUG00000002021)	ENSELUG00000033999	gmds (ENSELUG00000002034)	MYLK4 (ENSELUG00000002040)	serpinb1 (ENSELUG00000002049)	cahz (ENSELUG00000002055)	ENSELUG00000002069	pycr3 (ENSELUG00000002076)	bmb (ENSELUG00000002084)	GFUS (ENSELUG00000002100)	ARHGAP39 (ENSELUG00000002107)	mcm3l (ENSELUG00000002112) #22	mep1ba (ENSELUG00000000058)	ENSELUG00000002121	TRAPPC8 (ENSELUG00000002149)	ENSELUG00000034701	opn7a (ENSELUG00000002161)	b4galt6 (ENSELUG00000002166)	ttr (ENSELUG00000000062)	ENSELUG00000002186	dsc2l (ENSELUG00000002197)	ENSELUG00000002204	cdh2 (ENSELUG00000002228)	aqp4 (ENSELUG00000002244)	ENSELUG00000002251	TAF4B (ENSELUG00000002260)	psma8 (ENSELUG00000002277)
Northern pike	MODERN SPECIES	17	GAREM2 (ENSELUG00000024865)	hadhb (ENSELUG00000008448)	tfap2d (ENSELUG00000008515) #29	vsx2 (ENSELUG00000008538)	ENSELUG00000008557	abcd4 (ENSELUG00000008610)	HMBOX1 (ENSELUG00000008628)	KIF13B (ENSELUG00000008682)	elp3 (ENSELUG00000008716)	si:ch211-63o20.7 (ENSELUG00000027051)	ENSELUG00000008760	ENSELUG00000008786	pnocb (ENSELUG00000008865)	znf395b (ENSELUG00000008831)	paqr8 (ENSELUG00000008884) #21	mcm3 (ENSELUG00000009016) #22	il17a/f3 (ENSELUG00000009048) #23	stmn4 (ENSELUG00000009061)	emilin1a (ENSELUG00000009133)	vrtn (ENSELUG00000009185)	ENSELUG00000009229	ENSELUG00000009282	rd3 (ENSELUG00000009302)	rhag (ENSELUG00000009333)	gxylt1b (ENSELUG00000009378)	pdzrn4 (ENSELUG00000009410)	cntn1b (ENSELUG00000009490)	nrcama (ENSELUG00000009785)	PNPLA8 (ENSELUG00000009898)	ENSELUG00000009924	avpr2l (ENSELUG00000009942)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	856													ENSGT00390000013141.c.b	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000011890.l	ENSGT00390000016097.c.c.a	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000016097.c.d	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b	ENSGT00940000157848.a.b.c
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000070180	ENSOMYG00000064812	ENSOMYG00000054627	YLPM1 (ENSOMYG00000073604)	ENSOMYG00000002458	DLST (ENSOMYG00000069400)	ENSOMYG00000002517	ENSOMYG00000002541	ENSOMYG00000002565	ENSOMYG00000048281	ENSOMYG00000077685	ENSOMYG00000074150	pnocb (ENSOMYG00000002654)	znf395b (ENSOMYG00000002692)	ENSOMYG00000075400	mcm3 (ENSOMYG00000069397) #22	ENSOMYG00000003616	stmn4 (ENSOMYG00000003536)	emilin1a (ENSOMYG00000068144)	ENSOMYG00000059677	vrtn (ENSOMYG00000003729)	ENSOMYG00000003480	ENSOMYG00000068295	ENSOMYG00000058802	dll4 (ENSOMYG00000064805)	vps18 (ENSOMYG00000002855)	rhov (ENSOMYG00000073208)	ENSOMYG00000002990	ZFYVE1 (ENSOMYG00000003004)	wdr21 (ENSOMYG00000003033)	dpf3 (ENSOMYG00000003045)
Oncorhynchus_a	ANCESTRAL SPECIES	81	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.a.a	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000016097.c.d	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b	ENSGT00940000157848.a.b.c
Chinook salmon	MODERN SPECIES	29			ENSOTSG00005018650	ENSOTSG00005018652	ENSOTSG00005018656	ENSOTSG00005018665	znf513a (ENSOTSG00005018668)	SNX17 (ENSOTSG00005018673)	ENSOTSG00005018674	atraid (ENSOTSG00005018678)	ENSOTSG00005018681	ENSOTSG00005018683	xkr6b (ENSOTSG00005018684)	mtmr9 (ENSOTSG00005018744)	ENSOTSG00005018747	mcm3 (ENSOTSG00005018750) #22	ENSOTSG00005018752 #23	dll4 (ENSOTSG00005000473)	vps18 (ENSOTSG00005000478)	rhov (ENSOTSG00005000482)	ENSOTSG00005000485	ENSOTSG00005000490	SYNDIG1L (ENSOTSG00005000495)	ENSOTSG00005000496	ENSOTSG00005000497	gpr176 (ENSOTSG00005000499)	THBS1 (ENSOTSG00005000501)	katnbl1 (ENSOTSG00005000502)	emc7b (ENSOTSG00005000504)	chrm5b (ENSOTSG00005000506)	ENSOTSG00005000508
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01100000266732	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.a.a	ENSGT00940000157624.a.f	ENSGT00390000011890.l	ENSGT00390000016097.c.c.a	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000155070.b	ENSGT00940000157159.f.d
Atlantic salmon	MODERN SPECIES	6	FLVCR2 (ENSSSAG00000050878)	ENSSSAG00000111561	ENSSSAG00000046852	YLPM1 (ENSSSAG00000046863)	ENSSSAG00000102016	ENSSSAG00000085263	DLST (ENSSSAG00000050787)	ENSSSAG00000114459	ENSSSAG00000087627	ENSSSAG00000110290	ENSSSAG00000047064	ELP3 (ENSSSAG00000111667)	ENSSSAG00000119832	pnocb (ENSSSAG00000082859)	znf395b (ENSSSAG00000055437)	mcm3 (ENSSSAG00000055449) #22	stmn4 (ENSSSAG00000046831)	il17a/f3 (ENSSSAG00000056094) #23	ENSSSAG00000093523	ENSSSAG00000090511	emilin1a (ENSSSAG00000066717)	vrtn (ENSSSAG00000113477)	ENSSSAG00000107443	dll4 (ENSSSAG00000055522)	vps18 (ENSSSAG00000056372)	rhov (ENSSSAG00000118918)	pigh (ENSSSAG00000057756)	ZFYVE1 (ENSSSAG00000057772)	dcaf4 (ENSSSAG00000057830)	dpf3 (ENSSSAG00000039971)	ENSSSAG00000057549
Huchen	MODERN SPECIES	4168										vsx2 (ENSHHUG00000037834)	HMBOX1 (ENSHHUG00000037833)	ENSHHUG00000037775	pnocb (ENSHHUG00000037773)	znf395b (ENSHHUG00000037765)	ENSHHUG00000037764	mcm3 (ENSHHUG00000037738) #22
Salmoninae	ANCESTRAL SPECIES	672					ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT01100000263491.a.b.a.a.a.b.a.n	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000154790.b.a.a.b	ENSGT00930000151014.r.c	ENSGT00940000154297.A.g.b	ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000155621.wc	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a	ENSGT00390000007874.d	ENSGT01100000265031	ENSGT00950000183147.A.a.g.b.d	ENSGT00940000167177.c.b	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B.d	ENSGT00940000157624.a.e	ENSGT00390000011890.k	ENSGT00390000016097.c.c.b	ENSGT00940000159153.e.b	ENSGT00940000157159.f.c	ENSGT00940000155944.f.b.a.a	ENSGT00940000157848.a.b.d
Salmo	ANCESTRAL SPECIES	12	ENSGT00930000151014.r.c	ENSGT00940000154297.A.g.b	ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000155621.wc	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f.d	ENSGT00940000155500.f.f.c	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a	ENSGT01060000253605	ENSGT00390000007874.d	ENSGT01100000265031	ENSGT00950000183147.A.a.g.b.d	ENSGT00940000167177.c.b	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B.d	ENSGT00940000157624.a.e	ENSGT00390000011890.k	ENSGT00390000016097.c.c.b	ENSGT00940000159153.e.b	ENSGT00940000157159.f.c	ENSGT00940000155944.f.b.a.a
Atlantic salmon	MODERN SPECIES	25	DLST (ENSSSAG00000103763)	ENSSSAG00000050768	ENSSSAG00000050757	ENSSSAG00000050699	ENSSSAG00000062923	ENSSSAG00000050666	ENSSSAG00000109642	ENSSSAG00000050640	ENSSSAG00000044344	elp3 (ENSSSAG00000043627)	si:ch211-63o20.7 (ENSSSAG00000043610)	ENSSSAG00000117071	pnocb (ENSSSAG00000115566)	znf395b (ENSSSAG00000043583)	paqr8 (ENSSSAG00000106493) #21	mcm3 (ENSSSAG00000043532) #22	ENSSSAG00000043476	ENSSSAG00000095104	stmn4 (ENSSSAG00000092698)	ENSSSAG00000103833	vrtn (ENSSSAG00000043527)	ENSSSAG00000108907	syndig1l (ENSSSAG00000037837)	ENSSSAG00000082736	dll4 (ENSSSAG00000043356)	chac1 (ENSSSAG00000043336)	ino80 (ENSSSAG00000042852)	vps18 (ENSSSAG00000042597)	rhov (ENSSSAG00000112030)	pigh (ENSSSAG00000042530)	ENSSSAG00000091400
Huchen	MODERN SPECIES	3078													NUAK1 (ENSHHUG00000024376)	ENSHHUG00000024383	paqr8 (ENSHHUG00000024385) #21	mcm3 (ENSHHUG00000024391) #22	stmn4 (ENSHHUG00000024654)
Salmoninae	ANCESTRAL SPECIES	15										ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568.m	ENSGT00940000158019.h.a.a	ENSGT01050000245154	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db.d	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00970000197999	ENSGT00390000000568.n	ENSGT00940000158019.h.a.b	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l.b	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000167364.d	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00970000197999	ENSGT00390000000568.n	ENSGT00940000158019.h.a.b	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a	ENSGT00940000156897	ENSGT00950000182993.B.a.d.a
Coho salmon	MODERN SPECIES	4	ENSOKIG00005029169	ENSOKIG00005029186	BPHL (ENSOKIG00005029195)	ENSOKIG00005029205	exoc2 (ENSOKIG00005029268)	foxq1b (ENSOKIG00005029424)	ENSOKIG00005029436	foxc1b (ENSOKIG00005029445)	gmds (ENSOKIG00005029460)	MYLK4 (ENSOKIG00005029507)	SERPINB1 (ENSOKIG00005029582)	ENSOKIG00005029601	pycr3 (ENSOKIG00005029624)	bmb (ENSOKIG00005029642)	GFUS (ENSOKIG00005029673)	mcm3l (ENSOKIG00005030023) #22	mep1ba (ENSOKIG00005029383)	ENSOKIG00005029429	TRAPPC8 (ENSOKIG00005029499)	b4galt6 (ENSOKIG00005029921)	ENSOKIG00005029986	ENSOKIG00005030011	ENSOKIG00005030102	ENSOKIG00005030210	cdh2 (ENSOKIG00005030494)	ENSOKIG00005033160	ENSOKIG00005033184	ENSOKIG00005033194	ENSOKIG00005033215	psma8 (ENSOKIG00005033272)	rad54l (ENSOKIG00005033381)
Chinook salmon	MODERN SPECIES	29	DSP (ENSOTSG00005014075)	SLC22A23 (ENSOTSG00005014063)	ENSOTSG00005014061	ENSOTSG00005014059	BPHL (ENSOTSG00005014056)	ENSOTSG00005014054	exoc2 (ENSOTSG00005013998)	ENSOTSG00005013993	foxc1b (ENSOTSG00005013992)	gmds (ENSOTSG00005013991)	SERPINB1 (ENSOTSG00005013989)	ENSOTSG00005013988	pycr3 (ENSOTSG00005013987)	bmb (ENSOTSG00005013986)	ENSOTSG00005013978	mcm3l (ENSOTSG00005011938) #22	mep1ba (ENSOTSG00005011933)	ENSOTSG00005011932	TRAPPC8 (ENSOTSG00005011769)	b4galt6 (ENSOTSG00005011729)	ttr (ENSOTSG00005011725)	ENSOTSG00005011720	ENSOTSG00005011717	dsc2l (ENSOTSG00005011714)	cdh2 (ENSOTSG00005011689)	aqp4 (ENSOTSG00005011686)	ENSOTSG00005011685	ENSOTSG00005011684	psma8 (ENSOTSG00005011680)	rad54l (ENSOTSG00005011427)	st3gal3a (ENSOTSG00005011424)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000076665	ENSOMYG00000071598	ENSOMYG00000034883	exoc2 (ENSOMYG00000034717)	foxq1b (ENSOMYG00000075977)	ENSOMYG00000034595	foxc1b (ENSOMYG00000034587)	ENSOMYG00000067598	ENSOMYG00000034537	ENSOMYG00000034489	ENSOMYG00000057579	pycr3 (ENSOMYG00000034461)	ENSOMYG00000034442	ENSOMYG00000034413	ENSOMYG00000057621	mcm3l (ENSOMYG00000033322) #22	mep1ba (ENSOMYG00000033033)	ENSOMYG00000033012	ENSOMYG00000072644	ENSOMYG00000043268	ENSOMYG00000069389	ENSOMYG00000032386	ENSOMYG00000056633	ENSOMYG00000067818	ENSOMYG00000032203	ttr (ENSOMYG00000032166)	ENSOMYG00000032154	ENSOMYG00000032128	ENSOMYG00000032104	ENSOMYG00000063226	cdh2 (ENSOMYG00000032078)
Salmo	ANCESTRAL SPECIES	14	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db.d	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a	ENSGT00940000156897
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000089628	ENSSSAG00000009083	exoc2 (ENSSSAG00000007450)	foxq1b (ENSSSAG00000118532)	ENSSSAG00000007409	foxc1b (ENSSSAG00000113293)	gmds (ENSSSAG00000007080)	MYLK4 (ENSSSAG00000007045)	ENSSSAG00000007035	ENSSSAG00000007023	pycrl (ENSSSAG00000007006)	ENSSSAG00000006996	ENSSSAG00000080945	ENSSSAG00000107918	ENSSSAG00000080932	mcm3l (ENSSSAG00000080838) #22	mep1ba (ENSSSAG00000080805)	ENSSSAG00000120970	ENSSSAG00000080164	opn7a (ENSSSAG00000080081)	b4galt6 (ENSSSAG00000079954)	ttr (ENSSSAG00000118339)	ENSSSAG00000079927	ENSSSAG00000079910	ENSSSAG00000079892	cdh2 (ENSSSAG00000079280)	AQP4 (ENSSSAG00000079222)	ENSSSAG00000079220	TAF4B (ENSSSAG00000079213)	PSMA8 (ENSSSAG00000079190)	rad54l (ENSSSAG00000079143)
River trout	MODERN SPECIES	14	ENSSTUG00000012033	BPHL (ENSSTUG00000012027)	ENSSTUG00000012003	exoc2 (ENSSTUG00000011842)	foxq1b (ENSSTUG00000011830)	ENSSTUG00000011826	foxc1b (ENSSTUG00000011822)	ENSSTUG00000011810	MYLK4 (ENSSTUG00000011780)	SERPINB1 (ENSSTUG00000011763)	ENSSTUG00000011722	pycr3 (ENSSTUG00000011685)	bmb (ENSSTUG00000011664)	GFUS (ENSSTUG00000011614)	ARHGAP39 (ENSSTUG00000011571)	mcm3l (ENSSTUG00000011263) #22	mep1ba (ENSSTUG00000011231)	ENSSTUG00000011223	TRAPPC8 (ENSSTUG00000011036)	opn7a (ENSSTUG00000010998)	b4galt6 (ENSSTUG00000010928)	ttr (ENSSTUG00000010910)	ENSSTUG00000010898	ENSSTUG00000010844	ENSSTUG00000010842	dsc2l (ENSSTUG00000010779)	cdh2 (ENSSTUG00000007612)	aqp4 (ENSSTUG00000007478)	ENSSTUG00000007457	TAF4B (ENSSTUG00000007439)	psma8 (ENSSTUG00000007376)
Huchen	MODERN SPECIES	944											SERPINB1 (ENSHHUG00000008952)	ENSHHUG00000008916	pycr3 (ENSHHUG00000008884)	bmb (ENSHHUG00000008849)	ARHGAP39 (ENSHHUG00000008817)	mcm3l (ENSHHUG00000008671) #22	mep1ba (ENSHHUG00000008609)	ENSHHUG00000008603	TRAPPC8 (ENSHHUG00000008544)	opn7a (ENSHHUG00000008519)	b4galt6 (ENSHHUG00000008434)	ttr (ENSHHUG00000008424)	ENSHHUG00000008407	ENSHHUG00000008399	dsc2l (ENSHHUG00000008344)
Acanthomorphata	ANCESTRAL SPECIES	35								ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00390000000568	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000156852.c.f	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Tiger tail seahorse	MODERN SPECIES	500										KIF13B (ENSHCOG00000004099)	elp3 (ENSHCOG00000004054)	si:ch211-63o20.7 (ENSHCOG00000004037)	pnocb (ENSHCOG00000004019)	znf395b (ENSHCOG00000004001)	paqr8 (ENSHCOG00000003989) #21	mcm3 (ENSHCOG00000003973) #22	stmn4 (ENSHCOG00000003923)	emilin1a (ENSHCOG00000003905)	ankef1a (ENSHCOG00000003891)	snap25a (ENSHCOG00000003838)	sccpdhb (ENSHCOG00000003809)	ENSHCOG00000003795	fzd3a (ENSHCOG00000003769)	cdc42bpab (ENSHCOG00000003743)	lft1 (ENSHCOG00000020138)	hnrnpub (ENSHCOG00000020091)	fbxo16 (ENSHCOG00000020077)	fam49a (ENSHCOG00000020000)	vsnl1a (ENSHCOG00000000609)	sf3b6 (ENSHCOG00000019962)	tdrd6 (ENSHCOG00000019950)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Pleuronectoidei	ANCESTRAL SPECIES	46	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021
Tongue sole	MODERN SPECIES	24							TLR5 (ENSCSEG00000010461)	disp1 (ENSCSEG00000010473)	HMBOX1 (ENSCSEG00000010512)	KIF13B (ENSCSEG00000010536)	elp3 (ENSCSEG00000010569)	si:ch211-63o20.7 (ENSCSEG00000010600)	ENSCSEG00000010612	znf395b (ENSCSEG00000010616)	paqr8 (ENSCSEG00000010624) #21	mcm3 (ENSCSEG00000010629) #22	il17a/f3 (ENSCSEG00000010649) #23	stmn4 (ENSCSEG00000010659)	emilin1a (ENSCSEG00000010674)	ankef1a (ENSCSEG00000010701)	snap25a (ENSCSEG00000010748)	cnstb (ENSCSEG00000010773)	ENSCSEG00000010789	hnrnpub (ENSCSEG00000010804)	lft1 (ENSCSEG00000010820)	cdc42bpab (ENSCSEG00000010828)	fzd3a (ENSCSEG00000010870)	fbxo16 (ENSCSEG00000010900)
Turbot	MODERN SPECIES	12	mep1a.1 (ENSSMAG00000002640)	ENSSMAG00000002672	brox (ENSSMAG00000002686)	ENSSMAG00000002755	ENSSMAG00000022622	ENSSMAG00000002760	tlr5-b (ENSSMAG00000002774)	disp1 (ENSSMAG00000002808)	ENSSMAG00000002835	ENSSMAG00000002902	ELP3 (ENSSMAG00000002962)	pnocb (ENSSMAG00000003062)	si:ch211-63o20.7 (ENSSMAG00000003079)	znf395b (ENSSMAG00000003089)	paqr8 (ENSSMAG00000003117) #21	mcm3 (ENSSMAG00000003130) #22	ENSSMAG00000003245	stmn4 (ENSSMAG00000037598)	emilin1a (ENSSMAG00000003273)	ankef1a (ENSSMAG00000003325)	snap25a (ENSSMAG00000003362)	sccpdhb (ENSSMAG00000003507)	cnstb (ENSSMAG00000003574)	ENSSMAG00000003590	hnrnpub (ENSSMAG00000003607)	lft1 (ENSSMAG00000003629)	cdc42bpab (ENSSMAG00000003667)	ENSSMAG00000026000	fzd3a (ENSSMAG00000003731)	fbxo16 (ENSSMAG00000003762)	ENSSMAG00000003785
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000159678	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Seriola	ANCESTRAL SPECIES	4	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00390000002693	ENSGT00490000043329.a.b.g.b	ENSGT01030000234527.A.a.a.b.b	ENSGT00940000155459.x.a	ENSGT00940000153897.b.b	ENSGT00940000162464.r	ENSGT00940000153739.a.b.s	ENSGT00940000156975	ENSGT00940000157684	ENSGT00390000004803	ENSGT00950000183032.B.b.b	ENSGT00940000165711.a.a	ENSGT00940000159155
Yellowtail amberjack	MODERN SPECIES	2936	mep1a.1 (ENSSLDG00000019576)	ENSSLDG00000019596	brox (ENSSLDG00000019611)	ENSSLDG00000019646	ENSSLDG00000019662	ENSSLDG00000019760	disp1 (ENSSLDG00000019770)	HMBOX1 (ENSSLDG00000019781)	KIF13B (ENSSLDG00000019810)	ENSSLDG00000019861	elp3 (ENSSLDG00000019877)	si:ch211-63o20.7 (ENSSLDG00000019915)	pnocb (ENSSLDG00000019931)	znf395b (ENSSLDG00000019938)	paqr8 (ENSSLDG00000019955) #21	mcm3 (ENSSLDG00000019971) #22	il17a/f3 (ENSSLDG00000020022) #23	stmn4 (ENSSLDG00000020032)	tmem214 (ENSSLDG00000020045)	mapre3b (ENSSLDG00000020081)	dpysl5b (ENSSLDG00000020131)	dnmt3aa (ENSSLDG00000020176)	ENSSLDG00000020301	ENSSLDG00000020328	KIF3C (ENSSLDG00000020350)	rab10 (ENSSLDG00000020361)	lats1 (ENSSLDG00000020377)	nup43 (ENSSLDG00000020406)	pcmt (ENSSLDG00000020446)	ENSSLDG00000020473	lrp11 (ENSSLDG00000020480)
Greater amberjack	MODERN SPECIES	10	mep1a.1 (ENSSDUG00000008272)	ENSSDUG00000008262	brox (ENSSDUG00000008235)	ENSSDUG00000008228	ENSSDUG00000008219	ENSSDUG00000008205	disp1 (ENSSDUG00000008180)	HMBOX1 (ENSSDUG00000008155)	KIF13B (ENSSDUG00000008074)	ENSSDUG00000008063	elp3 (ENSSDUG00000008034)	si:ch211-63o20.7 (ENSSDUG00000008025)	pnocb (ENSSDUG00000008014)	znf395b (ENSSDUG00000007991)	paqr8 (ENSSDUG00000007985) #21	mcm3 (ENSSDUG00000007923) #22	il17a/f3 (ENSSDUG00000007890) #23	stmn4 (ENSSDUG00000007867)	tmem214 (ENSSDUG00000007836)	mapre3b (ENSSDUG00000007781)	dpysl5b (ENSSDUG00000007700)	dnmt3aa (ENSSDUG00000007664)	dtnba (ENSSDUG00000007553)	ENSSDUG00000007522	KIF3C (ENSSDUG00000007492)	rab10 (ENSSDUG00000007478)	lats1 (ENSSDUG00000007453)	nup43 (ENSSDUG00000007426)	pcmt (ENSSDUG00000007397)	lrp11 (ENSSDUG00000007384)	map3k5 (ENSSDUG00000007290)
Barramundi perch	MODERN SPECIES	126	ENSLCAG00010006384	mep1a.2 (ENSLCAG00010006371)	mep1a.1 (ENSLCAG00010006360)	ENSLCAG00010006353	brox (ENSLCAG00010006344)	ENSLCAG00010006301	ENSLCAG00010006278	disp1 (ENSLCAG00010006255)	HMBOX1 (ENSLCAG00010006244)	KIF13B (ENSLCAG00010005696)	elp3 (ENSLCAG00010005534)	si:ch211-63o20.7 (ENSLCAG00010005523)	pnocb (ENSLCAG00010005519)	znf395b (ENSLCAG00010005513)	paqr8 (ENSLCAG00010005512) #21	mcm3 (ENSLCAG00010005468) #22	ENSLCAG00010005449	stmn4 (ENSLCAG00010005448)	emilin1a (ENSLCAG00010005443)	ankef1a (ENSLCAG00010005442)	snap25a (ENSLCAG00010005413)	sccpdhb (ENSLCAG00010005391)	cnstb (ENSLCAG00010005375)	ENSLCAG00010005369	hnrnpub (ENSLCAG00010005315)	lft1 (ENSLCAG00010005297)	cdc42bpab (ENSLCAG00010004587)	fzd3a (ENSLCAG00010004464)	fbxo16 (ENSLCAG00010004458)	fam49a (ENSLCAG00010004431)	vsnl1a (ENSLCAG00010004412)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Climbing perch	MODERN SPECIES	15	mep1a.1 (ENSATEG00000015405)	ENSATEG00000025480	brox (ENSATEG00000015446)	ENSATEG00000015508	ENSATEG00000015523	ENSATEG00000029292	ENSATEG00000015550	disp1 (ENSATEG00000015562)	ENSATEG00000015579	ENSATEG00000015673	elp3 (ENSATEG00000015813)	si:ch211-63o20.7 (ENSATEG00000015842)	pnocb (ENSATEG00000027895)	znf395b (ENSATEG00000015873)	paqr8 (ENSATEG00000015880) #21	mcm3 (ENSATEG00000015894) #22	stmn4 (ENSATEG00000027591)	ENSATEG00000015923	emilin1a (ENSATEG00000015971)	ankef1a (ENSATEG00000015998)	snap25a (ENSATEG00000016086)	cnstb (ENSATEG00000016109)	ENSATEG00000016123	ENSATEG00000027762	hnrnpub (ENSATEG00000016178)	lft1 (ENSATEG00000016192)	cdc42bpab (ENSATEG00000016212)	fzd3a (ENSATEG00000016313)	fbxo16 (ENSATEG00000016459)	ENSATEG00000016512	VSNL1 (ENSATEG00000029333)
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000007770	ENSBSLG00000007788	brox (ENSBSLG00000007828)	ENSBSLG00000007897	ENSBSLG00000007905	ENSBSLG00000007916	TLR5 (ENSBSLG00000007927)	disp1 (ENSBSLG00000007951)	HMBOX1 (ENSBSLG00000007971)	KIF13B (ENSBSLG00000008070)	elp3 (ENSBSLG00000009675)	si:ch211-63o20.7 (ENSBSLG00000010588)	pnocb (ENSBSLG00000010611)	znf395b (ENSBSLG00000010635)	paqr8 (ENSBSLG00000010652) #21	mcm3 (ENSBSLG00000010778) #22	il17a/f3 (ENSBSLG00000011580) #23	stmn4 (ENSBSLG00000011614)	ENSBSLG00000011653	ENSBSLG00000011717	ENSBSLG00000011844	ENSBSLG00000011894	ENSBSLG00000011863	emilin1a (ENSBSLG00000011916)	ankef1a (ENSBSLG00000011931)	snap25a (ENSBSLG00000011993)	cnstb (ENSBSLG00000012126)	ENSBSLG00000012187	hnrnpub (ENSBSLG00000013195)	lft1 (ENSBSLG00000013468)	cdc42bpab (ENSBSLG00000013848)
Zig-zag eel	MODERN SPECIES	16	mep1a.1 (ENSMAMG00000006249)	ENSMAMG00000006266	brox (ENSMAMG00000006277)	ENSMAMG00000006311	ENSMAMG00000006318	ENSMAMG00000024460	ENSMAMG00000006340	disp1 (ENSMAMG00000006373)	ENSMAMG00000006435	ENSMAMG00000006450	elp3 (ENSMAMG00000006874)	si:ch211-63o20.7 (ENSMAMG00000006887)	pnocb (ENSMAMG00000006903)	znf395b (ENSMAMG00000006924)	paqr8 (ENSMAMG00000006934) #21	mcm3 (ENSMAMG00000006953) #22	ENSMAMG00000007001	stmn4 (ENSMAMG00000007012)	ENSMAMG00000027512	emilin1a (ENSMAMG00000007042)	ankef1a (ENSMAMG00000007059)	snap25a (ENSMAMG00000007092)	cnstb (ENSMAMG00000007139)	hnrnpub (ENSMAMG00000007196)	lft1 (ENSMAMG00000007252)	cdc42bpab (ENSMAMG00000007328)	ENSMAMG00000025640	fzd3a (ENSMAMG00000007585)	fbxo16 (ENSMAMG00000028207)	ENSMAMG00000026352	VSNL1 (ENSMAMG00000024490)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Tetraodontidae	ANCESTRAL SPECIES	50					ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566
Tetraodon	MODERN SPECIES	5	exoc8 (ENSTNIG00000019159)	TRIM67 (ENSTNIG00000019160)	GNPAT (ENSTNIG00000019161)	ENSTNIG00000019162	scara5 (ENSTNIG00000019163)	pbk (ENSTNIG00000019164)	esco2 (ENSTNIG00000019165)	ccdc25 (ENSTNIG00000019166)	brox (ENSTNIG00000019167)	KIF13B (ENSTNIG00000019168)	elp3 (ENSTNIG00000019169)	si:ch211-63o20.7 (ENSTNIG00000019170)	pnocb (ENSTNIG00000019171)	znf395b (ENSTNIG00000019172)	paqr8 (ENSTNIG00000001524) #21	mcm3 (ENSTNIG00000019173) #22	stmn4 (ENSTNIG00000019174)	emilin1a (ENSTNIG00000019175)	ankef1a (ENSTNIG00000019176)	mep1a.1 (ENSTNIG00000019177)	ENSTNIG00000019178	TAAR1 (ENSTNIG00000001506)	TAAR1 (ENSTNIG00000001360)	TAAR1 (ENSTNIG00000000579)	TAAR1 (ENSTNIG00000001657)	TAAR1 (ENSTNIG00000001335)	TAAR1 (ENSTNIG00000019179)	ENSTNIG00000001411	tnfrsf21 (ENSTNIG00000019180)	cd2ap (ENSTNIG00000019181)	ENSTNIG00000000684
Fugu	MODERN SPECIES	7	ENSTRUG00000029350	brox (ENSTRUG00000004871)	ENSTRUG00000004865	ENSTRUG00000029069	ENSTRUG00000004836	ENSTRUG00000029235	ENSTRUG00000004759	disp1 (ENSTRUG00000004602)	HMBOX1 (ENSTRUG00000020592)	KIF13B (ENSTRUG00000003931)	elp3 (ENSTRUG00000003113)	si:ch211-63o20.7 (ENSTRUG00000024378)	pnocb (ENSTRUG00000002503)	znf395b (ENSTRUG00000002307)	paqr8 (ENSTRUG00000002225) #21	mcm3 (ENSTRUG00000001596) #22	ENSTRUG00000020732	stmn4 (ENSTRUG00000001455)	emilin1a (ENSTRUG00000024201)	ankef1a (ENSTRUG00000001116)	ENSTRUG00000032825	mep1a.1 (ENSTRUG00000028118)	mep1a.2 (ENSTRUG00000004892)	ENSTRUG00000023061	ENSTRUG00000021997	TAAR1 (ENSTRUG00000004891)	TAAR1 (ENSTRUG00000004890)	ENSTRUG00000029680	TAAR1 (ENSTRUG00000026196)	ENSTRUG00000031044	ENSTRUG00000030271
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
European seabass	MODERN SPECIES	7	ENSDLAG00005033196	ENSDLAG00005014720	ENSDLAG00005014732	mep1a.1 (ENSDLAG00005014921)	ENSDLAG00005028785	brox (ENSDLAG00005032102)	ENSDLAG00005015063	ENSDLAG00005015080	ENSDLAG00005015096	ENSDLAG00005000194	ENSDLAG00005030130	ENSDLAG00005000329	elp3 (ENSDLAG00005028766)	si:ch211-63o20.7 (ENSDLAG00005000871)	znf395b (ENSDLAG00005000893)	mcm3 (ENSDLAG00005000903) #22	ENSDLAG00005000925	stmn4 (ENSDLAG00005000928)	emilin1a (ENSDLAG00005000932)	ankef1a (ENSDLAG00005000937)	snap25a (ENSDLAG00005000946)	sccpdhb (ENSDLAG00005000966)	cnstb (ENSDLAG00005028602)	ENSDLAG00005001031	ENSDLAG00005001037	hnrnpub (ENSDLAG00005001043)	lft1 (ENSDLAG00005001061)	cdc42bpab (ENSDLAG00005001801)	fzd3a (ENSDLAG00005014961)	fbxo16 (ENSDLAG00005014987)	ENSDLAG00005015016
Large yellow croaker	MODERN SPECIES	482	mep1a.1 (ENSLCRG00005021017)	ENSLCRG00005021014	brox (ENSLCRG00005021013)	ENSLCRG00005021011	ENSLCRG00005021010	ENSLCRG00005021009	ENSLCRG00005020959	disp1 (ENSLCRG00005020957)	HMBOX1 (ENSLCRG00005020955)	KIF13B (ENSLCRG00005020915)	elp3 (ENSLCRG00005020704)	si:ch211-63o20.7 (ENSLCRG00005020703)	pnocb (ENSLCRG00005020701)	znf395b (ENSLCRG00005020700)	paqr8 (ENSLCRG00005020699) #21	mcm3 (ENSLCRG00005020698) #22	il17a/f3 (ENSLCRG00005020696) #23	stmn4 (ENSLCRG00005020695)	emilin1a (ENSLCRG00005020694)	ankef1a (ENSLCRG00005020693)	snap25a (ENSLCRG00005020677)	cnstb (ENSLCRG00005020670)	ENSLCRG00005020667	ENSLCRG00005020666	hnrnpub (ENSLCRG00005020466)	lft1 (ENSLCRG00005020460)	cdc42bpab (ENSLCRG00005008268)	fzd3a (ENSLCRG00005008135)	fbxo16 (ENSLCRG00005008133)	fam49a (ENSLCRG00005008104)	vsnl1a (ENSLCRG00005008100)
Gilthead seabream	MODERN SPECIES	14	ENSSAUG00010002806	ENSSAUG00010020899	mep1a.2 (ENSSAUG00010020892)	mep1a.1 (ENSSAUG00010020890)	ENSSAUG00010020889	brox (ENSSAUG00010020887)	ENSSAUG00010020884	ENSSAUG00010020882	ENSSAUG00010020878	disp1 (ENSSAUG00010020877)	HMBOX1 (ENSSAUG00010020875)	KIF13B (ENSSAUG00010017552)	elp3 (ENSSAUG00010017444)	pnocb (ENSSAUG00010017434)	znf395b (ENSSAUG00010017431)	mcm3 (ENSSAUG00010017176) #22	ENSSAUG00010017139	si:ch211-63o20.7 (ENSSAUG00010017137)	emilin1a (ENSSAUG00010017133)	ankef1a (ENSSAUG00010017130)	snap25a (ENSSAUG00010017119)	sccpdhb (ENSSAUG00010016662)	cnstb (ENSSAUG00010016650)	ENSSAUG00010016648	hnrnpub (ENSSAUG00010016615)	lft1 (ENSSAUG00010016610)	ENSSAUG00010016609	cdc42bpab (ENSSAUG00010011853)	fzd3a (ENSSAUG00010011760)	fbxo16 (ENSSAUG00010011755)	fam49a (ENSSAUG00010011251)
Perciformes	ANCESTRAL SPECIES	14	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Lumpfish	MODERN SPECIES	16	mep1a.1 (ENSCLMG00005019837)	ENSCLMG00005019854	brox (ENSCLMG00005019857)	ENSCLMG00005019859	ENSCLMG00005019861	ENSCLMG00005019864	ENSCLMG00005019866	TLR5 (ENSCLMG00005019882)	disp1 (ENSCLMG00005020064)	HMBOX1 (ENSCLMG00005020065)	KIF13B (ENSCLMG00005020093)	elp3 (ENSCLMG00005020255)	si:ch211-63o20.7 (ENSCLMG00005020275)	pnocb (ENSCLMG00005020276)	znf395b (ENSCLMG00005020277)	mcm3 (ENSCLMG00005020280) #22	ENSCLMG00005020285	stmn4 (ENSCLMG00005020288)	emilin1a (ENSCLMG00005020290)	ankef1a (ENSCLMG00005020291)	snap25a (ENSCLMG00005020299)	ENSCLMG00005020301	hnrnpub (ENSCLMG00005020305)	lft1 (ENSCLMG00005020334)	cdc42bpab (ENSCLMG00005020405)	fzd3a (ENSCLMG00005002830)	fbxo16 (ENSCLMG00005002871)	fam49a (ENSCLMG00005002940)	vsnl1a (ENSCLMG00005003163)	sf3b6 (ENSCLMG00005003164)	tdrd6 (ENSCLMG00005003166)
Stickleback	MODERN SPECIES	18	ENSGACG00000004287	mep1a.2 (ENSGACG00000004292)	mep1a.1 (ENSGACG00000004319)	brox (ENSGACG00000004335)	ENSGACG00000004375	ENSGACG00000004376	ENSGACG00000004379	TLR5 (ENSGACG00000004381)	disp1 (ENSGACG00000004386)	HMBOX1 (ENSGACG00000004391)	KIF13B (ENSGACG00000004401)	elp3 (ENSGACG00000004427)	si:ch211-63o20.7 (ENSGACG00000004453)	pnocb (ENSGACG00000004461)	znf395b (ENSGACG00000004464)	mcm3 (ENSGACG00000004469) #22	stmn4 (ENSGACG00000004482)	emilin1a (ENSGACG00000004508)	ankef1a (ENSGACG00000004520)	snap25a (ENSGACG00000004546)	ENSGACG00000004618	ENSGACG00000004653	ENSGACG00000004657	ENSGACG00000004658	ENSGACG00000004668	hnrnpub (ENSGACG00000004679)	lft1 (ENSGACG00000004693)	cdc42bpab (ENSGACG00000004707)	fzd3a (ENSGACG00000004714)	fbxo16 (ENSGACG00000004722)	ENSGACG00000004726
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a
Pike perch	MODERN SPECIES	129	mep1a.2 (ENSSLUG00000016596)	mep1a.1 (ENSSLUG00000016584)	ENSSLUG00000016577	brox (ENSSLUG00000016556)	ENSSLUG00000016543	ENSSLUG00000016536	TLR5 (ENSSLUG00000016532)	disp1 (ENSSLUG00000016523)	HMBOX1 (ENSSLUG00000016513)	KIF13B (ENSSLUG00000014228)	elp3 (ENSSLUG00000013311)	si:ch211-63o20.7 (ENSSLUG00000013275)	pnocb (ENSSLUG00000013270)	znf395b (ENSSLUG00000013264)	paqr8 (ENSSLUG00000013262) #21	mcm3 (ENSSLUG00000013146) #22	ENSSLUG00000013112	stmn4 (ENSSLUG00000013099)	emilin1a (ENSSLUG00000013089)	ankef1a (ENSSLUG00000013081)	snap25a (ENSSLUG00000013056)	ENSSLUG00000013049	sccpdhb (ENSSLUG00000013041)	ENSSLUG00000013036	ENSSLUG00000013030	ENSSLUG00000013024	ENSSLUG00000013010	hnrnpub (ENSSLUG00000012886)	lft1 (ENSSLUG00000012848)	cdc42bpab (ENSSLUG00000012618)	fzd3a (ENSSLUG00000012560)
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000007654	mep1a.2 (ENSCGOG00000007649)	ENSCGOG00000007646	mep1a.1 (ENSCGOG00000007546)	ENSCGOG00000007542	ENSCGOG00000007541	ENSCGOG00000007540	disp1 (ENSCGOG00000007532)	HMBOX1 (ENSCGOG00000007526)	KIF13B (ENSCGOG00000004597)	elp3 (ENSCGOG00000003965)	si:ch211-63o20.7 (ENSCGOG00000003948)	pnocb (ENSCGOG00000003945)	znf395b (ENSCGOG00000003942)	paqr8 (ENSCGOG00000003937) #21	mcm3 (ENSCGOG00000002993) #22	il17a/f3 (ENSCGOG00000002946) #23	stmn4 (ENSCGOG00000002938)	emilin1a (ENSCGOG00000002936)	ankef1a (ENSCGOG00000002928)	ENSCGOG00000002918	snap25a (ENSCGOG00000002816)	sccpdhb (ENSCGOG00000022232)	cnstb (ENSCGOG00000022223)	ENSCGOG00000022216	hnrnpub (ENSCGOG00000022201)	lft1 (ENSCGOG00000022197)	cdc42bpab (ENSCGOG00000017526)	fbxo16 (ENSCGOG00000017358)	fam49a (ENSCGOG00000017328)	VSNL1 (ENSCGOG00000017323)
Ballan wrasse	MODERN SPECIES	41	mep1a.1 (ENSLBEG00000021377)	ENSLBEG00000021402	brox (ENSLBEG00000021422)	ENSLBEG00000021457	ENSLBEG00000021467	ENSLBEG00000021480	TLR5 (ENSLBEG00000021492)	disp1 (ENSLBEG00000021514)	HMBOX1 (ENSLBEG00000021557)	KIF13B (ENSLBEG00000021669)	elp3 (ENSLBEG00000021916)	si:ch211-63o20.7 (ENSLBEG00000021971)	pnocb (ENSLBEG00000021986)	znf395b (ENSLBEG00000022000)	paqr8 (ENSLBEG00000022027) #21	mcm3 (ENSLBEG00000022065) #22	ENSLBEG00000022137	stmn4 (ENSLBEG00000022173)	emilin1a (ENSLBEG00000022192)	ankef1a (ENSLBEG00000022262)	snap25a (ENSLBEG00000022394)	sccpdhb (ENSLBEG00000022425)	ENSLBEG00000022446	cnstb (ENSLBEG00000022460)	ENSLBEG00000022484	hnrnpub (ENSLBEG00000022520)	lft1 (ENSLBEG00000022573)	cdc42bpab (ENSLBEG00000022609)	fzd3a (ENSLBEG00000022728)	fbxo16 (ENSLBEG00000022850)	fam49a (ENSLBEG00000022873)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Aplocheiloidei	ANCESTRAL SPECIES	102	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d
Mangrove rivulus	MODERN SPECIES	174	ENSKMAG00000019268	brox (ENSKMAG00000019289)	ENSKMAG00000019322	ENSKMAG00000019337	ENSKMAG00000019359	TLR5 (ENSKMAG00000019374)	disp1 (ENSKMAG00000019401)	HMBOX1 (ENSKMAG00000019434)	KIF13B (ENSKMAG00000019450)	ENSKMAG00000019492	elp3 (ENSKMAG00000019511)	si:ch211-63o20.7 (ENSKMAG00000019551)	pnocb (ENSKMAG00000019559)	znf395b (ENSKMAG00000019578)	paqr8 (ENSKMAG00000019589) #21	mcm3 (ENSKMAG00000019607) #22	il17a/f3 (ENSKMAG00000019670) #23	stmn4 (ENSKMAG00000019680)	emilin1a (ENSKMAG00000019702)	ankef1a (ENSKMAG00000019715)
Turquoise killifish	MODERN SPECIES	835																MCM3 (ENSNFUG00015009576) #22	ENSNFUG00015009556	ENSNFUG00015009554
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
NAME_6	ANCESTRAL SPECIES	85	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Amazon molly	MODERN SPECIES	463	mep1a.2 (ENSPFOG00000000495)	mep1a.1 (ENSPFOG00000000564)	ENSPFOG00000023228	brox (ENSPFOG00000000628)	ENSPFOG00000020528	ENSPFOG00000020529	TLR5 (ENSPFOG00000000726)	disp1 (ENSPFOG00000000773)	HMBOX1 (ENSPFOG00000000843)	KIF13B (ENSPFOG00000001119)	elp3 (ENSPFOG00000001657)	si:ch211-63o20.7 (ENSPFOG00000001871)	pnocb (ENSPFOG00000001912)	znf395b (ENSPFOG00000001931)	paqr8 (ENSPFOG00000020530) #21	mcm3 (ENSPFOG00000002039) #22	il17a/f3 (ENSPFOG00000024626) #23	stmn4 (ENSPFOG00000002375)	emilin1a (ENSPFOG00000002432)	ankef1a (ENSPFOG00000002517)	snap25a (ENSPFOG00000002657)	cnstb (ENSPFOG00000002789)	ENSPFOG00000002809	hnrnpub (ENSPFOG00000002908)	lft1 (ENSPFOG00000003010)	cdc42bpab (ENSPFOG00000003122)	fzd3a (ENSPFOG00000004133)	fbxo16 (ENSPFOG00000004233)	fam49a (ENSPFOG00000004341)
Sailfin molly	MODERN SPECIES	122	ENSPLAG00000014685	brox (ENSPLAG00000014667)	ENSPLAG00000014622	ENSPLAG00000014617	ENSPLAG00000014608	TLR5 (ENSPLAG00000014543)	disp1 (ENSPLAG00000014443)	HMBOX1 (ENSPLAG00000014436)	KIF13B (ENSPLAG00000014410)	ENSPLAG00000014340	elp3 (ENSPLAG00000014319)	si:ch211-63o20.7 (ENSPLAG00000014289)	pnocb (ENSPLAG00000014284)	znf395b (ENSPLAG00000014277)	paqr8 (ENSPLAG00000014267) #21	mcm3 (ENSPLAG00000014257) #22	ENSPLAG00000014208	stmn4 (ENSPLAG00000014180)
Guppy	MODERN SPECIES	452	mep1a.2 (ENSPREG00000019852)	mep1a.1 (ENSPREG00000019833)	ENSPREG00000019807	brox (ENSPREG00000019785)	ENSPREG00000019776	ENSPREG00000019705	TLR5 (ENSPREG00000019675)	disp1 (ENSPREG00000019639)	HMBOX1 (ENSPREG00000019608)	KIF13B (ENSPREG00000019518)	elp3 (ENSPREG00000019454)	si:ch211-63o20.7 (ENSPREG00000019424)	pnocb (ENSPREG00000019418)	znf395b (ENSPREG00000019411)	paqr8 (ENSPREG00000019405) #21	mcm3 (ENSPREG00000019355) #22	ENSPREG00000019327	stmn4 (ENSPREG00000019308)	emilin1a (ENSPREG00000019292)	ankef1a (ENSPREG00000019273)	snap25a (ENSPREG00000019226)	cnstb (ENSPREG00000019179)	ENSPREG00000019145	ENSPREG00000019131	ENSPREG00000019117	lft1 (ENSPREG00000019085)	cdc42bpab (ENSPREG00000019012)	fzd3a (ENSPREG00000018969)	fbxo16 (ENSPREG00000018940)	fam49a (ENSPREG00000018894)	vsnl1a (ENSPREG00000018875)
Platyfish	MODERN SPECIES	6	mep1a.2 (ENSXMAG00000001763)	mep1a.1 (ENSXMAG00000001768)	ENSXMAG00000001775	brox (ENSXMAG00000001776)	ENSXMAG00000001787	ENSXMAG00000020057	TLR5 (ENSXMAG00000001788)	disp1 (ENSXMAG00000001789)	HMBOX1 (ENSXMAG00000001795)	KIF13B (ENSXMAG00000001804)	elp3 (ENSXMAG00000001825)	si:ch211-63o20.7 (ENSXMAG00000025014)	pnocb (ENSXMAG00000007809)	znf395b (ENSXMAG00000007800)	paqr8 (ENSXMAG00000019722) #21	mcm3 (ENSXMAG00000007764) #22	ENSXMAG00000024073	stmn4 (ENSXMAG00000007755)	emilin1a (ENSXMAG00000007750)	ankef1a (ENSXMAG00000007741)	ENSXMAG00000028320	snap25a (ENSXMAG00000007734)	cnstb (ENSXMAG00000028462)	ENSXMAG00000010348	hnrnpub (ENSXMAG00000010356)	lft1 (ENSXMAG00000014683)	cdc42bpab (ENSXMAG00000010796)	fzd3a (ENSXMAG00000010779)	fbxo16 (ENSXMAG00000010768)	fam49a (ENSXMAG00000010759)	vsnl1a (ENSXMAG00000010752)
NAME_4	ANCESTRAL SPECIES	167									ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Sheepshead minnow	MODERN SPECIES	673																mcm3 (ENSCVAG00000003962) #22	il17a/f3 (ENSCVAG00000003976) #23	stmn4 (ENSCVAG00000003980)	emilin1a (ENSCVAG00000003993)	ankef1a (ENSCVAG00000004008)	snap25a (ENSCVAG00000004040)	cnstb (ENSCVAG00000004051)	ENSCVAG00000004063	hnrnpub (ENSCVAG00000004280)	lft1 (ENSCVAG00000004301)	cdc42bpab (ENSCVAG00000004580)	fzd3a (ENSCVAG00000004608)	fbxo16 (ENSCVAG00000004708)	fam49a (ENSCVAG00000004748)
Mummichog	MODERN SPECIES	459								HMBOX1 (ENSFHEG00000006890)	KIF13B (ENSFHEG00000007070)	ENSFHEG00000007082	elp3 (ENSFHEG00000007122)	si:ch211-63o20.7 (ENSFHEG00000007134)	pnocb (ENSFHEG00000007145)	znf395b (ENSFHEG00000007167)	paqr8 (ENSFHEG00000007173) #21	mcm3 (ENSFHEG00000007224) #22	ENSFHEG00000007232	stmn4 (ENSFHEG00000007251)
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Indian medaka	MODERN SPECIES	22	atraid (ENSOMEG00000000842)	eif2b4 (ENSOMEG00000015664)	nme6 (ENSOMEG00000015579)	ENSOMEG00000015547	KIF13B (ENSOMEG00000015533)	HMBOX1 (ENSOMEG00000015496)	disp1 (ENSOMEG00000015454)	TLR5 (ENSOMEG00000015427)	ENSOMEG00000015395	ENSOMEG00000015389	elp3 (ENSOMEG00000015360)	si:ch211-63o20.7 (ENSOMEG00000015299)	pnocb (ENSOMEG00000015283)	znf395b (ENSOMEG00000015274)	paqr8 (ENSOMEG00000015257) #21	mcm3 (ENSOMEG00000015230) #22	il17a/f3 (ENSOMEG00000015139) #23	stmn4 (ENSOMEG00000015119)	emilin1a (ENSOMEG00000015102)	ankef1a (ENSOMEG00000015083)	snap25a (ENSOMEG00000015054)	cnstb (ENSOMEG00000015019)	ENSOMEG00000014992	hnrnpub (ENSOMEG00000014951)	lft1 (ENSOMEG00000014909)	cdc42bpab (ENSOMEG00000014868)	fzd3a (ENSOMEG00000001038)	fbxo16 (ENSOMEG00000000364)	fam49a (ENSOMEG00000014624)	vsnl1a (ENSOMEG00000014521)	sf3b6 (ENSOMEG00000014506)
Javanese ricefish	MODERN SPECIES	16	nme6 (ENSOJAG00000018826)	eif2b4 (ENSOJAG00000018738)	atraid (ENSOJAG00000018718)	snx17 (ENSOJAG00000018680)	znf513a (ENSOJAG00000018668)	KIF13B (ENSOJAG00000016463)	HMBOX1 (ENSOJAG00000016311)	TLR5 (ENSOJAG00000016284)	ENSOJAG00000016247	ENSOJAG00000016197	elp3 (ENSOJAG00000016009)	si:ch211-63o20.7 (ENSOJAG00000016004)	pnocb (ENSOJAG00000015999)	znf395b (ENSOJAG00000015995)	paqr8 (ENSOJAG00000015988) #21	mcm3 (ENSOJAG00000015618) #22	il17a/f3 (ENSOJAG00000015606) #23	stmn4 (ENSOJAG00000015593)	emilin1a (ENSOJAG00000015582)	ankef1a (ENSOJAG00000015571)	snap25a (ENSOJAG00000015504)	cnstb (ENSOJAG00000015449)	ENSOJAG00000015382	hnrnpub (ENSOJAG00000015260)	lft1 (ENSOJAG00000015234)	cdc42bpab (ENSOJAG00000005241)	fzd3a (ENSOJAG00000004150)	fbxo16 (ENSOJAG00000004130)	fam49a (ENSOJAG00000003754)	vsnl1a (ENSOJAG00000003661)	sf3b6 (ENSOJAG00000003639)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.b	ENSGT00390000005908
Japanese Medaka HdrR	MODERN SPECIES	16	atraid (ENSORLG00000016287)	eif2b4 (ENSORLG00000016283)	nme6 (ENSORLG00000027536)	ENSORLG00000016269	ENSORLG00000016265	HMBOX1 (ENSORLG00000016242)	disp1 (ENSORLG00000016227)	TLR5 (ENSORLG00000016221)	ENSORLG00000026137	ENSORLG00000025386	elp3 (ENSORLG00000016211)	si:ch211-63o20.7 (ENSORLG00000016204)	pnocb (ENSORLG00000016198)	znf395b (ENSORLG00000016195)	paqr8 (ENSORLG00000016192) #21	mcm3 (ENSORLG00000016187) #22	il17a/f3 (ENSORLG00000027446) #23	stmn4 (ENSORLG00000016161)	emilin1a (ENSORLG00000016152)	ankef1a (ENSORLG00000016142)	snap25a (ENSORLG00000016124)	cnstb (ENSORLG00000026472)	ENSORLG00000016117	hnrnpub (ENSORLG00000016114)	lft1 (ENSORLG00000016105)	cdc42bpab (ENSORLG00000016081)	fzd3a (ENSORLG00000015986)	fbxo16 (ENSORLG00000015978)	fam49a (ENSORLG00000015966)	ENSORLG00000023053	ENSORLG00000029879
Chinese medaka	MODERN SPECIES	796	snx17 (ENSOSIG00000013179)	atraid (ENSOSIG00000013324)	eif2b4 (ENSOSIG00000013327)	nme6 (ENSOSIG00000013331)	ENSOSIG00000013333	KIF13B (ENSOSIG00000013341)	HMBOX1 (ENSOSIG00000013529)	disp1 (ENSOSIG00000013533)	TLR5 (ENSOSIG00000013534)	ENSOSIG00000013535	ENSOSIG00000013536	elp3 (ENSOSIG00000013540)	si:ch211-63o20.7 (ENSOSIG00000013548)	pnocb (ENSOSIG00000013551)	znf395b (ENSOSIG00000013555)	mcm3 (ENSOSIG00000013558) #22	il17a/f3 (ENSOSIG00000013568) #23	stmn4 (ENSOSIG00000013574)	emilin1a (ENSOSIG00000013585)	ankef1a (ENSOSIG00000013599)	snap25a (ENSOSIG00000013608)	cnstb (ENSOSIG00000013803)	ENSOSIG00000013807	ENSOSIG00000013811	hnrnpub (ENSOSIG00000013815)	lft1 (ENSOSIG00000013816)	cdc42bpab (ENSOSIG00000013919)	fzd3a (ENSOSIG00000020399)	fbxo16 (ENSOSIG00000020402)	fam49a (ENSOSIG00000020436)	VSNL1 (ENSOSIG00000020565)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Amphiprion	ANCESTRAL SPECIES	113	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000164218	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Orange clownfish	MODERN SPECIES	2	brox (ENSAPEG00000013758)	ENSAPEG00000013795	ENSAPEG00000013805	ENSAPEG00000013826	disp1 (ENSAPEG00000013871)	ENSAPEG00000013921	ENSAPEG00000013938	HMBOX1 (ENSAPEG00000013963)	ENSAPEG00000014024	ENSAPEG00000014090	elp3 (ENSAPEG00000014113)	si:ch211-63o20.7 (ENSAPEG00000014157)	pnocb (ENSAPEG00000014170)	znf395b (ENSAPEG00000014182)	paqr8 (ENSAPEG00000014188) #21	mcm3 (ENSAPEG00000014200) #22	ENSAPEG00000014273	stmn4 (ENSAPEG00000014317)	emilin1a (ENSAPEG00000014361)	ankef1a (ENSAPEG00000014440)	snap25a (ENSAPEG00000014574)	sccpdhb (ENSAPEG00000014595)	cnstb (ENSAPEG00000014613)	ENSAPEG00000014631	hnrnpub (ENSAPEG00000014679)	lft1 (ENSAPEG00000014731)	cdc42bpab (ENSAPEG00000014843)	fzd3a (ENSAPEG00000015142)	fbxo16 (ENSAPEG00000015182)	fam49a (ENSAPEG00000015213)	vsnl1a (ENSAPEG00000015297)
Clown anemonefish	MODERN SPECIES	1204										ENSAOCG00000010958	elp3 (ENSAOCG00000010984)	si:ch211-63o20.7 (ENSAOCG00000000695)	pnocb (ENSAOCG00000011006)	znf395b (ENSAOCG00000011012)	paqr8 (ENSAOCG00000011023) #21	mcm3 (ENSAOCG00000011074) #22
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4325																mcm3 (ENSAPOG00000012758) #22
Spiny chromis	MODERN SPECIES	4333																mcm3 (ENSAPOG00000012516) #22
Spiny chromis	MODERN SPECIES	4336																mcm3 (ENSAPOG00000012414) #22
Spiny chromis	MODERN SPECIES	2226																mcm3 (ENSAPOG00000006541) #22	ENSAPOG00000006484	stmn4 (ENSAPOG00000006473)
Bicolor damselfish	MODERN SPECIES	855								HMBOX1 (ENSSPAG00000020569)	KIF13B (ENSSPAG00000020496)	ENSSPAG00000020485	elp3 (ENSSPAG00000020449)	si:ch211-63o20.7 (ENSSPAG00000020436)	pnocb (ENSSPAG00000020418)	znf395b (ENSSPAG00000020400)	paqr8 (ENSSPAG00000020394) #21	mcm3 (ENSSPAG00000020349) #22	ENSSPAG00000020312	stmn4 (ENSSPAG00000020276)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Nile tilapia	MODERN SPECIES	6	ENSONIG00000020924	ENSONIG00000039277	ENSONIG00000033230	ENSONIG00000020923	ENSONIG00000042239	TLR5 (ENSONIG00000001333)	disp1 (ENSONIG00000001330)	ENSONIG00000036493	HMBOX1 (ENSONIG00000001328)	KIF13B (ENSONIG00000001311)	elp3 (ENSONIG00000001307)	si:ch211-63o20.7 (ENSONIG00000001306)	pnocb (ENSONIG00000040429)	znf395b (ENSONIG00000036384)	paqr8 (ENSONIG00000020922) #21	mcm3 (ENSONIG00000001295) #22	ENSONIG00000001294	stmn4 (ENSONIG00000001293)	emilin1a (ENSONIG00000001290)	ankef1a (ENSONIG00000001282)	snap25a (ENSONIG00000001276)	he1.2 (ENSONIG00000037262)	cnstb (ENSONIG00000032036)	ENSONIG00000001269	hnrnpub (ENSONIG00000001260)	lft1 (ENSONIG00000001253)	cdc42bpab (ENSONIG00000001238)	fzd3a (ENSONIG00000001234)	fbxo16 (ENSONIG00000001230)	fam49a (ENSONIG00000001228)	VSNL1 (ENSONIG00000001225)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.h	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Burton s mouthbrooder	MODERN SPECIES	286									HMBOX1 (ENSHBUG00000011164)	KIF13B (ENSHBUG00000011324)	elp3 (ENSHBUG00000011383)	si:ch211-63o20.7 (ENSHBUG00000011405)	pnocb (ENSHBUG00000011424)	znf395b (ENSHBUG00000011443)	paqr8 (ENSHBUG00000011665) #21	mcm3 (ENSHBUG00000011722) #22	ENSHBUG00000011737	stmn4 (ENSHBUG00000011752)	emilin1a (ENSHBUG00000012025)	ankef1a (ENSHBUG00000012124)	snap25a (ENSHBUG00000012144)	ENSHBUG00000012237	cnstb (ENSHBUG00000012245)	ENSHBUG00000012254	hnrnpub (ENSHBUG00000012290)	lft1 (ENSHBUG00000000814)	cdc42bpab (ENSHBUG00000000350)	fzd3a (ENSHBUG00000012457)	fbxo16 (ENSHBUG00000012505)	fam49a (ENSHBUG00000012532)	vsnl1a (ENSHBUG00000012542)
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000161541	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000161541	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g.a.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Zebra mbuna	MODERN SPECIES	76				ENSMZEG00005022776	ENSMZEG00005022775	TLR5 (ENSMZEG00005022774)	disp1 (ENSMZEG00005022769)	ENSMZEG00005022768	HMBOX1 (ENSMZEG00005022766)	KIF13B (ENSMZEG00005022759)	elp3 (ENSMZEG00005022755)	si:ch211-63o20.7 (ENSMZEG00005022752)	pnocb (ENSMZEG00005022751)	znf395b (ENSMZEG00005022748)	ENSMZEG00005022746 #21	mcm3 (ENSMZEG00005022743) #22	ENSMZEG00005022740	stmn4 (ENSMZEG00005022738)	ENSMZEG00005022733
Eastern happy	MODERN SPECIES	6	ENSACLG00000009624	ENSACLG00000009620	brox (ENSACLG00000009591)	ENSACLG00000009586	ENSACLG00000009234	ENSACLG00000009215	TLR5 (ENSACLG00000009202)	disp1 (ENSACLG00000009170)	HMBOX1 (ENSACLG00000009067)	KIF13B (ENSACLG00000008995)	elp3 (ENSACLG00000008972)	si:ch211-63o20.7 (ENSACLG00000008500)	pnocb (ENSACLG00000008488)	znf395b (ENSACLG00000008468)	ENSACLG00000008462 #21	mcm3 (ENSACLG00000008434) #22	ENSACLG00000008427	stmn4 (ENSACLG00000008407)	emilin1a (ENSACLG00000008275)	ankef1a (ENSACLG00000008259)	snap25a (ENSACLG00000008238)	ENSACLG00000008209	cnstb (ENSACLG00000008204)	ENSACLG00000008195	hnrnpub (ENSACLG00000008165)	lft1 (ENSACLG00000008151)	cdc42bpab (ENSACLG00000008108)	fzd3a (ENSACLG00000008090)	fbxo16 (ENSACLG00000008073)	fam49a (ENSACLG00000008056)	vsnl1a (ENSACLG00000007802)
P. nyererei	MODERN SPECIES	308	ENSPNYG00000020923	brox (ENSPNYG00000020941)	ENSPNYG00000020971	ENSPNYG00000020979	ENSPNYG00000020988	ENSPNYG00000020997	TLR5 (ENSPNYG00000021037)	disp1 (ENSPNYG00000021059)	HMBOX1 (ENSPNYG00000021100)	KIF13B (ENSPNYG00000021149)	elp3 (ENSPNYG00000021199)	si:ch211-63o20.7 (ENSPNYG00000021251)	pnocb (ENSPNYG00000021265)	znf395b (ENSPNYG00000021284)	ENSPNYG00000021315 #21	mcm3 (ENSPNYG00000021333) #22	ENSPNYG00000021361	stmn4 (ENSPNYG00000021377)	emilin1a (ENSPNYG00000021397)	ankef1a (ENSPNYG00000021429)	snap25a (ENSPNYG00000021470)	ENSPNYG00000021503	cnstb (ENSPNYG00000021537)	ENSPNYG00000021572	hnrnpub (ENSPNYG00000021642)	lft1 (ENSPNYG00000021680)	cdc42bpab (ENSPNYG00000021718)	fzd3a (ENSPNYG00000021766)	fbxo16 (ENSPNYG00000021787)	fam49a (ENSPNYG00000021805)	vsnl1a (ENSPNYG00000021821)
Lyretail cichlid	MODERN SPECIES	316												si:ch211-63o20.7 (ENSNBRG00000017284)	pnocb (ENSNBRG00000017299)	znf395b (ENSNBRG00000017316)	paqr8 (ENSNBRG00000017333) #21	mcm3 (ENSNBRG00000017357) #22	ENSNBRG00000017430	stmn4 (ENSNBRG00000017485)	emilin1a (ENSNBRG00000017653)	ankef1a (ENSNBRG00000017686)	snap25a (ENSNBRG00000017728)	ENSNBRG00000017762	ENSNBRG00000017796	hnrnpub (ENSNBRG00000017855)	lft1 (ENSNBRG00000017915)	cdc42bpab (ENSNBRG00000018000)	ARPC5 (ENSNBRG00000018168)	ENSNBRG00000018181	fbxo16 (ENSNBRG00000018191)	fam49a (ENSNBRG00000018205)	vsnl1a (ENSNBRG00000018237)
Midas cichlid	MODERN SPECIES	1196									srp9 (ENSACIG00000022298)	KIF13B (ENSACIG00000022249)	elp3 (ENSACIG00000022227)	si:ch211-63o20.7 (ENSACIG00000022218)	pnocb (ENSACIG00000022211)	znf395b (ENSACIG00000022190)	paqr8 (ENSACIG00000022167) #21	mcm3 (ENSACIG00000022146) #22	ENSACIG00000022134	stmn4 (ENSACIG00000022120)	emilin1a (ENSACIG00000022030)	ENSACIG00000021903	ENSACIG00000021876	ENSACIG00000021867	ZC3H6 (ENSACIG00000021843)	ENSACIG00000021820	itga9 (ENSACIG00000021762)	ENSACIG00000021743	ENSACIG00000021728	ENSACIG00000021721	KCNK12 (ENSACIG00000021712)	msh6 (ENSACIG00000021689)	ENSACIG00000021646
Pinecone sodierfish	MODERN SPECIES	16	brox (ENSMMDG00005010618)	ENSMMDG00005010631	ENSMMDG00005010632	ENSMMDG00005010636	ENSMMDG00005010637	ENSMMDG00005010638	TLR5 (ENSMMDG00005010650)	disp1 (ENSMMDG00005011170)	HMBOX1 (ENSMMDG00005011173)	KIF13B (ENSMMDG00005011280)	elp3 (ENSMMDG00005015987)	si:ch211-63o20.7 (ENSMMDG00005016091)	pnocb (ENSMMDG00005016093)	znf395b (ENSMMDG00005016094)	paqr8 (ENSMMDG00005016096) #21	mcm3 (ENSMMDG00005016110) #22	ENSMMDG00005016180	stmn4 (ENSMMDG00005016183)	emilin1a (ENSMMDG00005016185)	ankef1a (ENSMMDG00005016192)	snap25a (ENSMMDG00005016197)	sccpdhb (ENSMMDG00005016214)	ENSMMDG00005016274	ENSMMDG00005002548	hnrnpub (ENSMMDG00005002655)	lft1 (ENSMMDG00005004998)	cdc42bpab (ENSMMDG00005005174)	fzd3a (ENSMMDG00005008184)	fbxo16 (ENSMMDG00005008194)	fam49a (ENSMMDG00005008220)	vsnl1a (ENSMMDG00005008866)
Cod	DUPLICATION
Cod	MODERN SPECIES	3	ENSGMOG00000032827	ENSGMOG00000027611	ENSGMOG00000036634	ENSGMOG00000029318	NAALADL2 (ENSGMOG00000033608)	ENSGMOG00000034887	ENSGMOG00000013578	ENSGMOG00000034640	ENSGMOG00000017718	ENSGMOG00000017738	ENSGMOG00000002087	ENSGMOG00000028574	ENSGMOG00000029420	ENSGMOG00000001071	ENSGMOG00000027434	mcm3l (ENSGMOG00000016488) #22	ENSGMOG00000004169	ENSGMOG00000003154	ENSGMOG00000016645	ENSGMOG00000016633	ENSGMOG00000033138	ENSGMOG00000015105	ENSGMOG00000029535	PDE4B (ENSGMOG00000006501)	ENSGMOG00000006467	ENSGMOG00000032209	dnai4 (ENSGMOG00000015481)	pars2 (ENSGMOG00000015460)	ENSGMOG00000006256	ENSGMOG00000006271	ENSGMOG00000018572
Cod	MODERN SPECIES	13	ENSGMOG00000034835	ENSGMOG00000030172	ENSGMOG00000031017	ENSGMOG00000036977	ENSGMOG00000024877	ENSGMOG00000000601	ENSGMOG00000000611	ENSGMOG00000017957	ENSGMOG00000029100	ENSGMOG00000030695	ENSGMOG00000029003	ENSGMOG00000027137	ENSGMOG00000012418	ENSGMOG00000032540	paqr8 (ENSGMOG00000029479) #21	ENSGMOG00000000832 #22	stmn4 (ENSGMOG00000023347)	ENSGMOG00000024035	ENSGMOG00000031634	ENSGMOG00000008578	ENSGMOG00000008575	ENSGMOG00000008571	ENSGMOG00000008560	ENSGMOG00000008550	ENSGMOG00000003573	gabrr1 (ENSGMOG00000010603)	GABRR2 (ENSGMOG00000000454)	ube2j1 (ENSGMOG00000015107)	ANKRD6 (ENSGMOG00000002106)	LYRM2 (ENSGMOG00000032297)	MDN1 (ENSGMOG00000009684)
Otomorpha	ANCESTRAL SPECIES	64	ENSGT00940000176161	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Clupeiformes	ANCESTRAL SPECIES	260			ENSGT00940000166222	ENSGT00390000004746	ENSGT00940000167364	ENSGT00940000157354.i	ENSGT00940000154843.F.c.b	ENSGT00390000009122	ENSGT00940000155842.s	ENSGT00940000156080.l	ENSGT00940000154872.B	ENSGT00940000157394.a	ENSGT00940000158092.o	ENSGT00940000156328.a.b	ENSGT00950000183102.A.b.a	ENSGT01050000244824.B #22	ENSGT00940000156618.d #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b
Denticle herring	MODERN SPECIES	5	ENSDCDG00000031932	kcnk3a (ENSDCDG00000031934)	slc35f6 (ENSDCDG00000031936)	mboat2b (ENSDCDG00000031943)	ENSDCDG00000031950	ENSDCDG00000031952	ENSDCDG00000031954	ENSDCDG00000031956	ENSDCDG00000031957	kcnk3a (ENSDCDG00000031959)	ENSDCDG00000031961	mboat2b (ENSDCDG00000031966)	ENSDCDG00000031969	ENSDCDG00000031970	ASAP2 (ENSDCDG00000031979)	mcm3 (ENSDCDG00000032043) #22	ENSDCDG00000032529	ENSDCDG00000032533	ENSDCDG00000032536	ENSDCDG00000003276	ENSDCDG00000003416
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	1	BPHL (ENSCHAG00000024409)	ENSCHAG00000024413	ENSCHAG00000024419	DSP (ENSCHAG00000024435)	tbc1d7 (ENSCHAG00000024454)	ENSCHAG00000024461	sirt5 (ENSCHAG00000024475)	adcy1a (ENSCHAG00000024527)	igfbp1a (ENSCHAG00000024566)	igfbp3 (ENSCHAG00000024570)	ENSCHAG00000024572	ENSCHAG00000024574	ENSCHAG00000024579	ENSCHAG00000024584	si:ch211-191a24.4 (ENSCHAG00000000324)	mcm3l (ENSCHAG00000000597) #22	mep1ba (ENSCHAG00000000890)	ENSCHAG00000000954	TRAPPC8 (ENSCHAG00000001395)	ENSCHAG00000005560	b4galt6 (ENSCHAG00000005696)	ttr (ENSCHAG00000005935)	ENSCHAG00000005948	ENSCHAG00000006042	ENSCHAG00000006129	dsc2l (ENSCHAG00000006228)	cdh2 (ENSCHAG00000006482)	aqp4 (ENSCHAG00000008107)	ENSCHAG00000008111	ENSCHAG00000008119	ENSCHAG00000008130
Atlantic herring	MODERN SPECIES	6	dtl (ENSCHAG00000020537)	PPP2R5A (ENSCHAG00000020626)	opn8c (ENSCHAG00000021073)	tagapb (ENSCHAG00000021089)	ENSCHAG00000021100	rsph3 (ENSCHAG00000021105)	ezrb (ENSCHAG00000021133)	SYTL3 (ENSCHAG00000021579)	enpp1 (ENSCHAG00000021672)	kcnk3a (ENSCHAG00000023836)	slc35f6 (ENSCHAG00000023842)	ENSCHAG00000023959	e2f6 (ENSCHAG00000026214)	mboat2b (ENSCHAG00000026224)	GPX1 (ENSCHAG00000026244)	mcm3 (ENSCHAG00000026249) #22	ENSCHAG00000026259 #23	stmn4 (ENSCHAG00000026263)	emilin1a (ENSCHAG00000026270)	ankef1a (ENSCHAG00000026273)	SNAP25 (ENSCHAG00000026280)	sccpdhb (ENSCHAG00000026292)	cnstb (ENSCHAG00000026297)	ENSCHAG00000026300	hnrnpub (ENSCHAG00000026311)	lft1 (ENSCHAG00000026327)	cdc42bpab (ENSCHAG00000026335)	fzd3a (ENSCHAG00000026363)	fbxo16 (ENSCHAG00000026367)	fam49a (ENSCHAG00000026381)	ENSCHAG00000026402
Otophysi	ANCESTRAL SPECIES	7	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.d	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d
Characiphysae	ANCESTRAL SPECIES	24	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	17	bloc1s2 (ENSIPUG00000013494)	USP24 (ENSIPUG00000013521)	PCSK9 (ENSIPUG00000013650)	bsnd (ENSIPUG00000013697)	si:dkeyp-51f12.2 (ENSIPUG00000013708)	dhcr24 (ENSIPUG00000013718)	lexm (ENSIPUG00000013763)	ENSIPUG00000013779	sirt5 (ENSIPUG00000014162)	adcy1a (ENSIPUG00000014220)	igfbp1a (ENSIPUG00000014271)	igfbp3 (ENSIPUG00000014299)	ENSIPUG00000014338	ENSIPUG00000014368	si:ch211-191a24.4 (ENSIPUG00000014382)	mcm3l (ENSIPUG00000014393) #22	mep1b (ENSIPUG00000014431)	ENSIPUG00000014461	trappc8 (ENSIPUG00000014508)	B4galt6 (ENSIPUG00000014871)	TTR (ENSIPUG00000014900)	ENSIPUG00000014914	ENSIPUG00000014933	dsc2l (ENSIPUG00000014955)	si:dkey-5n18.1 (ENSIPUG00000014981)	cdh2 (ENSIPUG00000014994)	aqp4 (ENSIPUG00000015039)	ENSIPUG00000015055	ENSIPUG00000015072	ENSIPUG00000015081	psma8 (ENSIPUG00000015106)
Channel catfish	MODERN SPECIES	17	srd5a3 (ENSIPUG00000008842)	c25h12orf57 (ENSIPUG00000008823)	niban1a (ENSIPUG00000008779)	KIFAP3 (ENSIPUG00000008497)	mettl11b (ENSIPUG00000008461)	gorab (ENSIPUG00000008452)	PRRX1 (ENSIPUG00000008362)	ENSIPUG00000008346	ENSIPUG00000008267	slc25a24 (ENSIPUG00000008225)	elp3 (ENSIPUG00000008133)	PDIK1L (ENSIPUG00000008116)	pnoc (ENSIPUG00000008105)	znf395 (ENSIPUG00000008084)	paqr8 (ENSIPUG00000008073) #21	MCM3 (ENSIPUG00000007956) #22	Il17f (ENSIPUG00000007931) #23	Stmn4 (ENSIPUG00000007910)	emilin1a (ENSIPUG00000007899)	ankef1a (ENSIPUG00000007880)	snap25 (ENSIPUG00000007864)	cnstb (ENSIPUG00000007828)	ENSIPUG00000007794	hnrnpu (ENSIPUG00000007749)	lft1 (ENSIPUG00000007713)	cdc42bpab (ENSIPUG00000007633)	FZD3 (ENSIPUG00000007603)	fbxo16 (ENSIPUG00000007590)	fam49a (ENSIPUG00000007421)	vsnl1a (ENSIPUG00000007389)	TMEM30A (ENSIPUG00000007370)
Characiphysae_b	ANCESTRAL SPECIES	23	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a
Characoidei	ANCESTRAL SPECIES	21	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029153	myh6 (ENSAMXG00000025295)	slc25a29 (ENSAMXG00000032847)	ENSAMXG00000029912	ENSAMXG00000025292	ppp2r5cb (ENSAMXG00000020584)	hsp90aa1.2 (ENSAMXG00000020572)	mgat2 (ENSAMXG00000025291)	ENSAMXG00000020569	ENSAMXG00000039635	ENSAMXG00000035428	igfbp1a (ENSAMXG00000009512)	igfbp3 (ENSAMXG00000036513)	TNS3 (ENSAMXG00000009528)	si:ch211-191a24.4 (ENSAMXG00000035418)	mcm3l (ENSAMXG00000032018) #22	mep1ba (ENSAMXG00000009554)	ENSAMXG00000036278	ENSAMXG00000037574	PALLD (ENSAMXG00000009581)	cbr4 (ENSAMXG00000036711)	TRMT1L (ENSAMXG00000009602)	niban1a (ENSAMXG00000009608)	kifap3a (ENSAMXG00000009625)	ntmt2 (ENSAMXG00000009655)	gorab (ENSAMXG00000035192)	PRRX1 (ENSAMXG00000032983)	ENSAMXG00000036779	ENSAMXG00000042731	ENSAMXG00000043606	slc25a24 (ENSAMXG00000009717)
Mexicana tetra	MODERN SPECIES	18	TRMT1L (ENSAMXG00000009602)	niban1a (ENSAMXG00000009608)	kifap3a (ENSAMXG00000009625)	ntmt2 (ENSAMXG00000009655)	gorab (ENSAMXG00000035192)	PRRX1 (ENSAMXG00000032983)	ENSAMXG00000036779	ENSAMXG00000042731	ENSAMXG00000043606	slc25a24 (ENSAMXG00000009717)	elp3 (ENSAMXG00000009723)	si:ch211-63o20.7 (ENSAMXG00000009746)	pnocb (ENSAMXG00000042920)	znf395b (ENSAMXG00000009775)	paqr8 (ENSAMXG00000025525) #21	mcm3 (ENSAMXG00000009797) #22	il17a/f3 (ENSAMXG00000039772) #23	stmn4 (ENSAMXG00000041709)	cdc42bpb (ENSAMXG00000019172)	vipas39 (ENSAMXG00000019164)	ENSAMXG00000026157	runx2b (ENSAMXG00000035698)	opn8a (ENSAMXG00000030048)	opn8b (ENSAMXG00000032634)	mmut (ENSAMXG00000017324)	fkbp1b (ENSAMXG00000032570)	wdcp (ENSAMXG00000017293)	mfsd2b (ENSAMXG00000017279)	UBXN2A (ENSAMXG00000035346)	ATAD2B (ENSAMXG00000017229)	KLHL29 (ENSAMXG00000017203)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	13	bloc1s2 (ENSPNAG00000029256)	USP24 (ENSPNAG00000029226)	PCSK9 (ENSPNAG00000029007)	ENSPNAG00000028995	si:dkeyp-51f12.2 (ENSPNAG00000004482)	dhcr24 (ENSPNAG00000028979)	ENSPNAG00000028890	ENSPNAG00000028878	ENSPNAG00000028865	sirt5 (ENSPNAG00000028851)	adcy1a (ENSPNAG00000028838)	igfbp1a (ENSPNAG00000005775)	igfbp3 (ENSPNAG00000028714)	ENSPNAG00000005173	si:ch211-191a24.4 (ENSPNAG00000028597)	mcm3l (ENSPNAG00000028584) #22	mep1ba (ENSPNAG00000028478)	mep1ba (ENSPNAG00000004353)	ENSPNAG00000028337	TRAPPC8 (ENSPNAG00000028290)	opn7a (ENSPNAG00000028088)	b4galt6 (ENSPNAG00000028079)	ttr (ENSPNAG00000028049)	ENSPNAG00000028033	ENSPNAG00000005279	ENSPNAG00000027969	ENSPNAG00000027949	dsc2l (ENSPNAG00000027829)	si:dkey-5n18.1 (ENSPNAG00000027804)	cdh2 (ENSPNAG00000027771)	aqp4 (ENSPNAG00000027697)
Red-bellied piranha	MODERN SPECIES	329			TRMT1L (ENSPNAG00000004389)	niban1a (ENSPNAG00000005531)	kifap3a (ENSPNAG00000028726)	ntmt2 (ENSPNAG00000028749)	gorab (ENSPNAG00000028768)	PRRX1 (ENSPNAG00000028803)	ENSPNAG00000028915	slc25a24 (ENSPNAG00000028987)	elp3 (ENSPNAG00000029054)	si:ch211-63o20.7 (ENSPNAG00000029063)	pnocb (ENSPNAG00000029078)	znf395b (ENSPNAG00000029097)	paqr8 (ENSPNAG00000004508) #21	mcm3 (ENSPNAG00000029681) #22	il17a/f3 (ENSPNAG00000029698) #23	stmn4 (ENSPNAG00000029705)	emilin1a (ENSPNAG00000029714)	ankef1a (ENSPNAG00000029721)	snap25a (ENSPNAG00000029735)	sccpdhb (ENSPNAG00000029744)	cnstb (ENSPNAG00000029747)	ENSPNAG00000009749
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	472													ENSEEEG00000000808	ENSEEEG00000000788	si:ch211-191a24.4 (ENSEEEG00000000775)	mcm3l (ENSEEEG00000000725) #22	ENSEEEG00000000710	TRAPPC8 (ENSEEEG00000000589)	b4galt6 (ENSEEEG00000000494)	ttr (ENSEEEG00000000474)	ENSEEEG00000000451	ENSEEEG00000000422	ENSEEEG00000000392	ENSEEEG00000000375	dsc2l (ENSEEEG00000000365)	si:dkey-5n18.1 (ENSEEEG00000000356)
Electric eel	MODERN SPECIES	250		cbr4 (ENSEEEG00000005123)	TRMT1L (ENSEEEG00000005125)	niban1a (ENSEEEG00000005136)	kifap3a (ENSEEEG00000005154)	ntmt2 (ENSEEEG00000005199)	gorab (ENSEEEG00000005215)	prrx1b (ENSEEEG00000005218)	ENSEEEG00000005222	slc25a24 (ENSEEEG00000005231)	elp3 (ENSEEEG00000005247)	si:ch211-63o20.7 (ENSEEEG00000005417)	pnocb (ENSEEEG00000005418)	znf395b (ENSEEEG00000005419)	paqr8 (ENSEEEG00000005421) #21	mcm3 (ENSEEEG00000005426) #22	il17a/f3 (ENSEEEG00000005440) #23	stmn4 (ENSEEEG00000005443)	emilin1a (ENSEEEG00000005444)	ankef1a (ENSEEEG00000005449)	snap25a (ENSEEEG00000005459)	ENSEEEG00000005526	hnrnpub (ENSEEEG00000005540)	lft1 (ENSEEEG00000005622)	cdc42bpab (ENSEEEG00000005658)	ENSEEEG00000006157	fzd3a (ENSEEEG00000006159)	fbxo16 (ENSEEEG00000006160)	fam49a (ENSEEEG00000006173)	vsnl1a (ENSEEEG00000006572)	sf3b6 (ENSEEEG00000006573)
Cyprinoidei	ANCESTRAL SPECIES	334															ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	12	dsc2l (ENSDARG00000039677)	bsnd (ENSDARG00000086265)	si:dkeyp-51f12.3 (ENSDARG00000091904)	si:dkeyp-51f12.2 (ENSDARG00000095606)	dhcr24 (ENSDARG00000013236)	ENSDARG00000028541	ENSDARG00000034707	si:ch211-121a2.2 (ENSDARG00000039682)	sirt5 (ENSDARG00000039684)	adcy1a (ENSDARG00000069026)	igfbp1a (ENSDARG00000099351)	igfbp3 (ENSDARG00000099144)	ENSDARG00000031911	ENSDARG00000095654	si:ch211-191a24.4 (ENSDARG00000037528)	mcm3l (ENSDARG00000037532) #22	mep1ba (ENSDARG00000037533)	TRAPPC8 (ENSDARG00000038866)	opn7a (ENSDARG00000024208)	b4galt6 (ENSDARG00000010301)	ttr (ENSDARG00000037191)	pum2 (ENSDARG00000061040)	tshr (ENSDARG00000037195)	cep128 (ENSDARG00000103771)	nrxn3b (ENSDARG00000062693)	snw1 (ENSDARG00000091563)	sptlc2b (ENSDARG00000074287)	ism2b (ENSDARG00000053859)	cyp46a1.3 (ENSDARG00000089177)	cyp46a1.4 (ENSDARG00000113820)	cyp46a1.2 (ENSDARG00000004262)
Zebrafish	MODERN SPECIES	12	ENSDARG00000094010	ENSDARG00000079036	TRMT1L (ENSDARG00000042057)	niban1a (ENSDARG00000042055)	kifap3a (ENSDARG00000008639)	ntmt2 (ENSDARG00000042033)	gorab (ENSDARG00000042031)	prrx1b (ENSDARG00000042027)	ENSDARG00000054723	slc25a24 (ENSDARG00000008568)	elp3 (ENSDARG00000042005)	si:ch211-63o20.7 (ENSDARG00000042000)	pnocb (ENSDARG00000024189)	znf395b (ENSDARG00000024195)	paqr8 (ENSDARG00000088828) #21	mcm3 (ENSDARG00000024204) #22	stmn4 (ENSDARG00000030106)	il17a/f3 (ENSDARG00000041976) #23	emilin1a (ENSDARG00000024537)	ankef1a (ENSDARG00000019135)	snap25a (ENSDARG00000020609)	sccpdhb (ENSDARG00000024564)	cnstb (ENSDARG00000042759)	ENSDARG00000024575	hnrnpub (ENSDARG00000004735)	lft1 (ENSDARG00000019920)	cdc42bpab (ENSDARG00000016464)	fbxo16 (ENSDARG00000033949)	fzd3a (ENSDARG00000021664)	fam49a (ENSDARG00000006672)	vsnl1a (ENSDARG00000023228)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	339						ENSGT00390000014886.j	ENSGT00940000159466.d.c.b	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b.a.b	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a #21	ENSGT01050000244824.B.db.a #22	ENSGT00940000156618.c.a.b #23	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n	ENSGT00390000005861.a.b	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.a
Goldfish	MODERN SPECIES	12	lratd1 (ENSCARG00000005899)	rnaseh1 (ENSCARG00000005871)	rps7 (ENSCARG00000005846)	allc (ENSCARG00000005816)	ntmt2 (ENSCARG00000005808)	gorab (ENSCARG00000005799)	prrx1b (ENSCARG00000005769)	ENSCARG00000005760	ENSCARG00000005722	slc25a24 (ENSCARG00000005688)	elp3 (ENSCARG00000005669)	si:ch211-63o20.7 (ENSCARG00000005660)	pnocb (ENSCARG00000005656)	znf395b (ENSCARG00000005649)	paqr8 (ENSCARG00000005646) #21	mcm3 (ENSCARG00000005596) #22	il17a/f3 (ENSCARG00000005581) #23	stmn4 (ENSCARG00000005572)	emilin1a (ENSCARG00000005563)	ankef1a (ENSCARG00000005555)	snap25a (ENSCARG00000005536)	sccpdhb (ENSCARG00000005286)	cnstb (ENSCARG00000005271)	ENSCARG00000005266	hnrnpub (ENSCARG00000004898)	lft1 (ENSCARG00000004860)	cdc42bpab (ENSCARG00000003756)	fzd3a (ENSCARG00000003670)	ENSCARG00000003651	fam49a (ENSCARG00000035535)	vsnl1a (ENSCARG00000035506)
Cyprininae_a	ANCESTRAL SPECIES	323								ENSGT00390000014886.j	ENSGT00940000159466.d.c.b	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a #21	ENSGT01050000244824.B.db.a #22	ENSGT00940000156618.c.a.b #23	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n	ENSGT00390000005861.a.b	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.b.b
Common carp reference	MODERN SPECIES	34	ENSCCRG00000079211	TRMT1L (ENSCCRG00000022240)	niban1a (ENSCCRG00000022247)	kifap3a (ENSCCRG00000022274)	ntmt2 (ENSCCRG00000022893)	gorab (ENSCCRG00000055088)	prrx1b (ENSCCRG00000076310)	ENSCCRG00000030163	ENSCCRG00000047315	slc25a24 (ENSCCRG00000047317)	elp3 (ENSCCRG00000047319)	si:ch211-63o20.7 (ENSCCRG00000054786)	pnocb (ENSCCRG00000059629)	znf395b (ENSCCRG00000005473)	paqr8 (ENSCCRG00000072910) #21	mcm3 (ENSCCRG00000005245) #22	il17a/f3 (ENSCCRG00000067104) #23	stmn4 (ENSCCRG00000074692)	emilin1a (ENSCCRG00000075193)	ankef1a (ENSCCRG00000034142)	ENSCCRG00000057731	sccpdhb (ENSCCRG00000003293)	cnstb (ENSCCRG00000061873)	ENSCCRG00000023045	hnrnpub (ENSCCRG00000023049)	lft1 (ENSCCRG00000010540)	cdc42bpab (ENSCCRG00000033766)	fzd3a (ENSCCRG00000050984)	fbxo16 (ENSCCRG00000011349)	fam49a (ENSCCRG00000050994)	vsnl1a (ENSCCRG00000059197)
Golden-line barbel	MODERN SPECIES	472	PLA2G4A (ENSSGRG00000042480)	arpc5b (ENSSGRG00000042479)	HMCN1 (ENSSGRG00000042464)	ivns1abpa (ENSSGRG00000042195)	TRMT1L (ENSSGRG00000042192)	niban1a (ENSSGRG00000042191)	kifap3a (ENSSGRG00000042116)	gorab (ENSSGRG00000042113)	prrx1b (ENSSGRG00000042108)	slc25a24 (ENSSGRG00000042056)	elp3 (ENSSGRG00000041972)	si:ch211-63o20.7 (ENSSGRG00000041959)	pnocb (ENSSGRG00000041957)	znf395b (ENSSGRG00000041956)	paqr8 (ENSSGRG00000041955) #21	mcm3 (ENSSGRG00000041541) #22	il17a/f3 (ENSSGRG00000041534) #23	stmn4 (ENSSGRG00000041532)	emilin1a (ENSSGRG00000041528)	ankef1a (ENSSGRG00000041525)	SNAP25 (ENSSGRG00000041520)	sccpdhb (ENSSGRG00000041516)	cnstb (ENSSGRG00000041514)	ENSSGRG00000041512	hnrnpub (ENSSGRG00000041491)	lft1 (ENSSGRG00000041489)	cdc42bpab (ENSSGRG00000034778)	fzd3a (ENSSGRG00000034722)	fbxo16 (ENSSGRG00000034720)	fam49a (ENSSGRG00000034659)	vsnl1a (ENSSGRG00000034656)
Cyprininae	ANCESTRAL SPECIES	58	ENSGT00940000155635.u.b	ENSGT00390000001254.e	ENSGT00530000063646.a.c	ENSGT00940000154149.b.a.g.b.a	ENSGT00390000003574.a.b	ENSGT00390000008371.a.e	ENSGT00390000014886.i	ENSGT00940000159466.d.c.a	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT00940000159860.e.b #21	ENSGT01050000244824.B.db.b #22	ENSGT00940000156618.c.a.a #23	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a	ENSGT00940000156513.a.b.b.a.a	ENSGT00390000005908.b.b	ENSGT00940000159049.a.a
Cyprininae_a	ANCESTRAL SPECIES	257	ENSGT00940000154149.b.a.g.b.a	ENSGT00390000003574.a.b	ENSGT00390000008371.a.e	ENSGT00390000008371.a.f	ENSGT00390000014886.i	ENSGT00940000159466.d.c.a	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b.a.b	ENSGT00950000183190.a.a.b.c.b.b	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT01050000244824.B.db.b #22	ENSGT00940000156618.c.a.a #23	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a
Golden-line barbel	MODERN SPECIES	259	arpc5b (ENSSGRG00000036499)	ivns1abpa (ENSSGRG00000036336)	ENSSGRG00000036329	TRMT1L (ENSSGRG00000036324)	kifap3a (ENSSGRG00000036160)	ntmt2 (ENSSGRG00000036153)	ENSSGRG00000036151	prrx1b (ENSSGRG00000036137)	ENSSGRG00000036134	ENSSGRG00000036130	slc25a24 (ENSSGRG00000036074)	elp3 (ENSSGRG00000035922)	si:ch211-63o20.7 (ENSSGRG00000035921)	pnocb (ENSSGRG00000035920)	znf395b (ENSSGRG00000035919)	mcm3 (ENSSGRG00000034715) #22	il17a/f3 (ENSSGRG00000034707) #23	stmn4 (ENSSGRG00000034706)	emilin1a (ENSSGRG00000034705)	ENSSGRG00000034703	snap25a (ENSSGRG00000034697)	cnstb (ENSSGRG00000034696)	sccpdhb (ENSSGRG00000034695)	cnstb (ENSSGRG00000034694)	hnrnpub (ENSSGRG00000034693)	lft1 (ENSSGRG00000034692)	cdc42bpab (ENSSGRG00000033401)	fzd3a (ENSSGRG00000033390)	fbxo16 (ENSSGRG00000033389)	fam49a (ENSSGRG00000033378)	ENSSGRG00000033377
Common carp reference	MODERN SPECIES	28	arpc5b (ENSCCRG00000074120)	HMCN1 (ENSCCRG00000021811)	ivns1abpa (ENSCCRG00000028200)	ENSCCRG00000028194	niban1a (ENSCCRG00000027491)	kifap3a (ENSCCRG00000023708)	ntmt2 (ENSCCRG00000037004)	gorab (ENSCCRG00000023654)	prrx1b (ENSCCRG00000071513)	ENSCCRG00000069171	ENSCCRG00000070865	slc25a24 (ENSCCRG00000062518)	elp3 (ENSCCRG00000007703)	si:ch211-63o20.7 (ENSCCRG00000066954)	znf395b (ENSCCRG00000007688)	mcm3 (ENSCCRG00000020414) #22	il17a/f3 (ENSCCRG00000078734) #23	stmn4 (ENSCCRG00000068496)	emilin1a (ENSCCRG00000056865)	ankef1a (ENSCCRG00000032559)	snap25a (ENSCCRG00000034090)	sccpdhb (ENSCCRG00000009379)	cnstb (ENSCCRG00000078235)	ENSCCRG00000009391	hnrnpub (ENSCCRG00000009415)	lft1 (ENSCCRG00000023109)	cdc42bpab (ENSCCRG00000010550)	fzd3a (ENSCCRG00000011341)	fbxo16 (ENSCCRG00000050979)	ENSCCRG00000050960	ENSCCRG00000022773
Goldfish	MODERN SPECIES	39	ivns1abpa (ENSCARG00000068328)	TRMT1L (ENSCARG00000068128)	niban1a (ENSCARG00000068067)	ENSCARG00000068062	kifap3a (ENSCARG00000067962)	ntmt2 (ENSCARG00000067920)	gorab (ENSCARG00000067913)	prrx1b (ENSCARG00000067889)	ENSCARG00000067854	slc25a24 (ENSCARG00000067716)	elp3 (ENSCARG00000067485)	si:ch211-63o20.7 (ENSCARG00000067453)	pnocb (ENSCARG00000067449)	znf395b (ENSCARG00000067406)	paqr8 (ENSCARG00000067389) #21	mcm3 (ENSCARG00000066540) #22	il17a/f3 (ENSCARG00000066446) #23	moxd1 (ENSCARG00000066358)	ccn2a (ENSCARG00000066342)	itsn2a (ENSCARG00000066063)	mrpl19 (ENSCARG00000066000)	pfas (ENSCARG00000065577)	ENSCARG00000065543	hook1 (ENSCARG00000063593)	cyp2n13 (ENSCARG00000063137)	cyp2ad2 (ENSCARG00000063089)	cyp2v1 (ENSCARG00000062887)	ENSCARG00000062027	paics (ENSCARG00000061075)	ppat (ENSCARG00000060856)	si:dkeyp-117h8.4 (ENSCARG00000060837)
Cyprininae	ANCESTRAL SPECIES	318	ENSGT00940000156945.a	ENSGT00940000156450.c.d	ENSGT00390000005889.b	ENSGT00940000159474.d	ENSGT00490000043472.c	ENSGT01060000249130	ENSGT00390000008338.b	ENSGT00390000016298.b.a	ENSGT01090000260029.a.a.b.a.b.c.a	ENSGT00940000156080.l.d	ENSGT00940000154872.B.d	ENSGT00940000157394.a.d	ENSGT00940000158092.o.g	ENSGT00940000163886.A.a.a.a.a	ENSGT00950000183102.A.b.a.h	ENSGT01050000244824.B.eb #22	ENSGT00950000183111.b.a.b.c	ENSGT00950000183111.b.a.b.d.a.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT01050000245154	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f
Goldfish	MODERN SPECIES	39	ENSCARG00000015644	ENSCARG00000015641	bloc1s2 (ENSCARG00000015630)	USP24 (ENSCARG00000015610)	PCSK9 (ENSCARG00000015590)	dhcr24 (ENSCARG00000015547)	ENSCARG00000015539	ENSCARG00000015533	sirt5 (ENSCARG00000015491)	adcy1a (ENSCARG00000015415)	igfbp1a (ENSCARG00000015366)	IGFBP-1 (ENSCARG00000015357)	igfbp3 (ENSCARG00000015348)	ENSCARG00000015336	si:ch211-191a24.4 (ENSCARG00000015328)	mcm3l (ENSCARG00000013461) #22	ENSCARG00000045730	TRAPPC8 (ENSCARG00000038100)	opn7a (ENSCARG00000037789)	ENSCARG00000037753	ENSCARG00000037719	b4galt6 (ENSCARG00000037298)	ENSCARG00000037188	ENSCARG00000037151	ENSCARG00000036994	dsc2l (ENSCARG00000036912)	ENSCARG00000036893	cdh2 (ENSCARG00000032339)	aqp4 (ENSCARG00000032153)	ENSCARG00000032139	psma8 (ENSCARG00000032090)
Cyprininae_a	ANCESTRAL SPECIES	34		ENSGT00390000005889.b	ENSGT00940000159474.d	ENSGT00490000043472.c	ENSGT01060000249130	ENSGT00390000008338.b	ENSGT00390000016298.b.a	ENSGT01090000260029.a.a.b.a.b.c.a	ENSGT00940000156080.l.d	ENSGT00940000154872.B.d	ENSGT00940000157394.a.d	ENSGT00940000158092.o.g	ENSGT00940000156328.a.b	ENSGT00940000163886.A.a.a.a.a	ENSGT00950000183102.A.b.a.h	ENSGT01050000244824.B.eb #22	ENSGT00950000182909.b.a.a.db.a	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT00940000158019.e.b	ENSGT00940000153229.A.a.b.db	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f	ENSGT00940000160354.k
Common carp reference	MODERN SPECIES	28	PRKAA2 (ENSCCRG00000019855)	PLPP3 (ENSCCRG00000070026)	USP24 (ENSCCRG00000002958)	ENSCCRG00000037022	PCSK9 (ENSCCRG00000002872)	dhcr24 (ENSCCRG00000009491)	ENSCCRG00000077673	ENSCCRG00000064046	sirt5 (ENSCCRG00000068878)	adcy1a (ENSCCRG00000033894)	igfbp3 (ENSCCRG00000082123)	igfbp1a (ENSCCRG00000078979)	ENSCCRG00000061058	ENSCCRG00000035329	si:ch211-191a24.4 (ENSCCRG00000035332)	mcm3l (ENSCCRG00000024357) #22	ENSCCRG00000082763	TRAPPC8 (ENSCCRG00000006394)	opn7a (ENSCCRG00000080477)	ENSCCRG00000054103	ENSCCRG00000012674	b4galt6 (ENSCCRG00000055122)	ttr (ENSCCRG00000069752)	ENSCCRG00000079988	ENSCCRG00000025894	ENSCCRG00000025887	cdh2 (ENSCCRG00000033391)	AQP4 (ENSCCRG00000057730)	ENSCCRG00000058327	ENSCCRG00000062827	psma8 (ENSCCRG00000000585)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	694												adcy1a (ENSSGRG00000010610)	igfbp1a (ENSSGRG00000010602)	igfbp3 (ENSSGRG00000010600)	si:ch211-191a24.4 (ENSSGRG00000010587)	mcm3l (ENSSGRG00000010433) #22	ENSSGRG00000010418	TRAPPC8 (ENSSGRG00000009013)	opn7a (ENSSGRG00000008999)	ENSSGRG00000008998	ttr (ENSSGRG00000008996)	ENSSGRG00000008993	ENSSGRG00000008991	alad (ENSSGRG00000008799)	tmem203 (ENSSGRG00000008796)	ENSSGRG00000008795	ssna1 (ENSSGRG00000008794)	ENSSGRG00000007833	ENSSGRG00000007784
Golden-line barbel	MODERN SPECIES	34	dab1a (ENSSGRG00000054161)	PRKAA2 (ENSSGRG00000054139)	PLPP3 (ENSSGRG00000054134)	bloc1s2 (ENSSGRG00000054129)	USP24 (ENSSGRG00000054118)	dhcr24 (ENSSGRG00000054096)	ENSSGRG00000054095	ENSSGRG00000054094	sirt5 (ENSSGRG00000054005)	adcy1a (ENSSGRG00000054004)	igfbp1a (ENSSGRG00000054003)	igfbp3 (ENSSGRG00000054002)	ENSSGRG00000054001	ENSSGRG00000054000	si:ch211-191a24.4 (ENSSGRG00000053998)	mcm3l (ENSSGRG00000053997) #22	mep1ba (ENSSGRG00000053996)	mep1ba (ENSSGRG00000053995)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	3090																ENSCMIG00000004636 #22
Elephant shark	MODERN SPECIES	2403																ENSCMIG00000006466 #22	ENSCMIG00000006471
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Lamprey	MODERN SPECIES	5523																mcm3 (ENSPMAG00000007367) #22
Hagfish	MODERN SPECIES	911																mcm3l (ENSEBUG00000007856) #22	ENSEBUG00000010493 ##11	ENSEBUG00000001443	ENSEBUG00000014616	ENSEBUG00000014359	elovl2 (ENSEBUG00000005653) ##10
Ciona	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Ciona intestinalis	MODERN SPECIES	22	ENSCING00000022933	ENSCING00000001249	nodal (ENSCING00000001251)	ENSCING00000001256	ENSCING00000014932	ENSCING00000014934	ENSCING00000022708	ENSCING00000014936	ENSCING00000014937	ENSCING00000024002	ENSCING00000025130	ENSCING00000001246	ENSCING00000014922	ENSCING00000001260	ENSCING00000023554	ENSCING00000001519 #22	ENSCING00000014740	ENSCING00000024449	ENSCING00000014739	ENSCING00000014738	ENSCING00000019388	ENSCING00000000262