Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Bilateria	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Euteleostomi	ANCESTRAL SPECIES	8	ENSGT00940000163032	ENSGT00390000014654	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.A	ENSGT00940000166976	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000159992	ENSGT00520000055578.a.a.d	ENSGT00940000166855	ENSGT00940000159556	ENSGT00940000166646	ENSGT00530000063834.e.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00950000183111.b.a	ENSGT00950000182909.b.a.a	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158138	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.a.a	ENSGT01030000234624.b.a.b	ENSGT01030000234624.a	ENSGT00940000155981	ENSGT00940000160563	ENSGT00940000156037.a	ENSGT00510000049120	ENSGT00940000156453.a
Sarcopterygii	ANCESTRAL SPECIES	736															ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00390000017195	ENSGT00940000161946	ENSGT00940000165828	ENSGT00940000161371	ENSGT00940000163547	ENSGT00940000159693	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000161092	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00940000162362 #33	ENSGT00940000162013 #35	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D
Mammalia	ANCESTRAL SPECIES	38												ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892
Theria	ANCESTRAL SPECIES	4	ENSGT00390000002428.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000154526.h	ENSGT00940000161750	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00410000029004 #30	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Primates	ANCESTRAL SPECIES	5	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33
Hominoidea	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Hominidae	ANCESTRAL SPECIES	5	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000164034.a.b #14	ENSGT00940000163367 #15	ENSGT00940000164034.a.a ##14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000165163 #7	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000164034.a.b #14	ENSGT00940000163367 #15	ENSGT00940000164034.a.a ##14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Pan	ANCESTRAL SPECIES	5	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000164034.a.b #14	ENSGT00940000163367 #15	ENSGT00940000164034.a.a ##14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000148681 #19	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00390000013931.a.a	ENSGT00390000006548.b.j.b.d	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650
Bonobo	MODERN SPECIES	19	ENSPPAG00000029855 #7	ELOVL5 (ENSPPAG00000035952) #8	GCM1 (ENSPPAG00000040280) #9	FBXO9 (ENSPPAG00000043395) #10	CILK1 (ENSPPAG00000037696) #11	GSTA4 (ENSPPAG00000033249) #12	GSTA3 (ENSPPAG00000033156) #13	ENSPPAG00000008098 #14	GSTA5 (ENSPPAG00000039462) #15	GSTA2 (ENSPPAG00000034591) #16	TMEM14A (ENSPPAG00000035341) #17	TRAM2 (ENSPPAG00000010782) #18	ENSPPAG00000043386 #19	EFHC1 (ENSPPAG00000009640) #20	PAQR8 (ENSPPAG00000026339) #21	MCM3 (ENSPPAG00000028475) #22	IL17F (ENSPPAG00000039561) #23	ENSPPAG00000007695 #24	IL17A (ENSPPAG00000028707) #25	PKHD1 (ENSPPAG00000040343) #26	ENSPPAG00000027898 #27	TFAP2B (ENSPPAG00000031196) #28	TFAP2D (ENSPPAG00000038341) #29	ENSPPAG00000036979 #30	DEFB110 (ENSPPAG00000042577) #31	DEFB114 (ENSPPAG00000030543) #32	CRISP1 (ENSPPAG00000029268) #33	PGK2 (ENSPPAG00000005435) #34	CRISP3 (ENSPPAG00000041881) #35	CRISP2 (ENSPPAG00000014874) #36	RHAG (ENSPPAG00000034078) #37
Chimpanzee	MODERN SPECIES	19	ELOVL5 (ENSPTRG00000018289) #8	GCM1 (ENSPTRG00000018288) #9	FBXO9 (ENSPTRG00000018287) #10	CILK1 (ENSPTRG00000018286) #11	GSTA4 (ENSPTRG00000018285) #12	GSTA3 (ENSPTRG00000032453) #13	ENSPTRG00000048903 #14	GSTA5 (ENSPTRG00000018284) #15	GSTA1 (ENSPTRG00000018280) ##14	GSTA2 (ENSPTRG00000032454) #16	TMEM14A (ENSPTRG00000018279) #17	TRAM2 (ENSPTRG00000040958) #18	ENSPTRG00000044462 #19	EFHC1 (ENSPTRG00000018277) #20	PAQR8 (ENSPTRG00000047053) #21	MCM3 (ENSPTRG00000018275) #22	IL17F (ENSPTRG00000018274) #23	ENSPTRG00000052866 #24	IL17A (ENSPTRG00000018273) #25	PKHD1 (ENSPTRG00000018272) #26	ENSPTRG00000051627	ENSPTRG00000007377	ENSPTRG00000043674	TFAP2B (ENSPTRG00000018269) #28	TFAP2D (ENSPTRG00000018268) #29	ENSPTRG00000052375	DEFB112 (ENSPTRG00000018267) #30	DEFB110 (ENSPTRG00000029615) #31	DEFB113 (ENSPTRG00000032456)	DEFB114 (ENSPTRG00000018266) #32	DEFB133 (ENSPTRG00000032458)
Human	MODERN SPECIES	18	ELOVL5 (ENSG00000012660) #8	GCM1 (ENSG00000137270) #9	ENSG00000288646	FBXO9 (ENSG00000112146) #10	ENSG00000288614	CILK1 (ENSG00000112144) #11	GSTA4 (ENSG00000170899) #12	GSTA3 (ENSG00000174156) #13	GSTA5 (ENSG00000182793) #15	GSTA1 (ENSG00000243955) ##14	GSTA2 (ENSG00000244067) #16	TMEM14A (ENSG00000096092) #17	TRAM2 (ENSG00000065308) #18	EFHC1 (ENSG00000096093) #20	PAQR8 (ENSG00000170915) #21	MCM3 (ENSG00000112118) #22	IL17F (ENSG00000112116) #23	IL17A (ENSG00000112115) #25	PKHD1 (ENSG00000170927) #26	TFAP2B (ENSG00000008196) #28	TFAP2D (ENSG00000008197) #29	DEFB112 (ENSG00000180872) #30	DEFB110 (ENSG00000203970) #31	DEFB113 (ENSG00000214642)	DEFB114 (ENSG00000177684) #32	CRISP1 (ENSG00000124812) #33	PGK2 (ENSG00000170950) #34	CRISP3 (ENSG00000096006) #35	CRISP2 (ENSG00000124490) #36	RHAG (ENSG00000112077) #37	C6orf141 (ENSG00000197261)
Gorilla	MODERN SPECIES	19	KLHL31 (ENSGGOG00000016811)	GCLC (ENSGGOG00000006714)	ELOVL5 (ENSGGOG00000011386) #8	GCM1 (ENSGGOG00000006527) #9	FBXO9 (ENSGGOG00000006520) #10	CILK1 (ENSGGOG00000000189) #11	GSTA4 (ENSGGOG00000005376) #12	ENSGGOG00000024635 #14	GSTA5 (ENSGGOG00000027587) #15	GSTA2 (ENSGGOG00000026997) #16	TMEM14A (ENSGGOG00000000773) #17	TRAM2 (ENSGGOG00000011922) #18	ENSGGOG00000039603	EFHC1 (ENSGGOG00000023504) #20	PAQR8 (ENSGGOG00000038667) #21	MCM3 (ENSGGOG00000005009) #22	IL17F (ENSGGOG00000005003) #23	ENSGGOG00000039441 #24	IL17A (ENSGGOG00000009736) #25	PKHD1 (ENSGGOG00000010943) #26	ENSGGOG00000041406	ENSGGOG00000041412 ##27	TFAP2B (ENSGGOG00000014613) #28	TFAP2D (ENSGGOG00000003510) #29	ENSGGOG00000043782	ENSGGOG00000025282 #30	DEFB110 (ENSGGOG00000001322) #31	ENSGGOG00000025750	ENSGGOG00000022278	CRISP1 (ENSGGOG00000010522) #33	PGK2 (ENSGGOG00000026767) #34
Orangutan	MODERN SPECIES	19	ENSPPYG00000039927	LRRC1 (ENSPPYG00000016725)	KLHL31 (ENSPPYG00000016724)	GCLC (ENSPPYG00000016722)	ELOVL5 (ENSPPYG00000016720) #8	GCM1 (ENSPPYG00000016719) #9	FBXO9 (ENSPPYG00000016718) #10	CILK1 (ENSPPYG00000016716) #11	GSTA4 (ENSPPYG00000016715) #12	GSTA3 (ENSPPYG00000016714) #13	ENSPPYG00000038815	TMEM14A (ENSPPYG00000030434) #17	TRAM2 (ENSPPYG00000016708) #18	ENSPPYG00000039550	EFHC1 (ENSPPYG00000016707) #20	MCM3 (ENSPPYG00000016705) #22	IL17F (ENSPPYG00000016704) #23	IL17A (ENSPPYG00000016703) #25	PKHD1 (ENSPPYG00000016702) #26	ENSPPYG00000033183	TFAP2B (ENSPPYG00000034593) #28	TFAP2D (ENSPPYG00000016699) #29	ENSPPYG00000016698 #30	ENSPPYG00000016697	DEFB113 (ENSPPYG00000016696)	DEFB114 (ENSPPYG00000016695) #32	ENSPPYG00000016694	CRISP1 (ENSPPYG00000016693) #33	PGK2 (ENSPPYG00000016692) #34	CRISP3 (ENSPPYG00000016691) #35	CRISP2 (ENSPPYG00000016690) #36
Gibbon	MODERN SPECIES	14	KLHL31 (ENSNLEG00000003415)	GCLC (ENSNLEG00000003422)	ENSNLEG00000032611 #7	ELOVL5 (ENSNLEG00000003499) #8	GCM1 (ENSNLEG00000003544) #9	FBXO9 (ENSNLEG00000003558) #10	CILK1 (ENSNLEG00000003607) #11	GSTA4 (ENSNLEG00000003648) #12	GSTA3 (ENSNLEG00000003666) #13	GSTA5 (ENSNLEG00000027295) #15	GSTA1 (ENSNLEG00000003684) #14	TMEM14A (ENSNLEG00000027983) #17	TRAM2 (ENSNLEG00000003748) #18	EFHC1 (ENSNLEG00000003764) #20	PAQR8 (ENSNLEG00000028996) #21	MCM3 (ENSNLEG00000003799) #22	IL17F (ENSNLEG00000003875) #23	ENSNLEG00000034287 #24	IL17A (ENSNLEG00000003884) #25	PKHD1 (ENSNLEG00000003892) #26	ENSNLEG00000032903	ENSNLEG00000031575	TFAP2B (ENSNLEG00000003972) #28	ENSNLEG00000029633	TFAP2D (ENSNLEG00000003990) #29	ENSNLEG00000029907	DEFB110 (ENSNLEG00000003996) #31	ENSNLEG00000003997	CRISP1 (ENSNLEG00000003999) #33	PGK2 (ENSNLEG00000018744) #34	CRISP3 (ENSNLEG00000004028) #35
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00900000143764	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650
Rhinopithecus	ANCESTRAL SPECIES	86	ENSGT00940000154470.a	ENSGT00940000162144	ENSGT00950000182938.b.b.b.b.b.b	ENSGT00940000159146	ENSGT00390000014907.B	ENSGT00400000022679	ENSGT00390000015066.d	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317.c	ENSGT00390000017600	ENSGT00390000004385	ENSGT00940000161211	ENSGT00910000144211.n.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00900000143764	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Golden snub-nosed monkey	MODERN SPECIES	617	GCLC (ENSRROG00000039518)	ELOVL5 (ENSRROG00000038948) #8	GCM1 (ENSRROG00000032236) #9	FBXO9 (ENSRROG00000029600) #10	CILK1 (ENSRROG00000034096) #11	GSTA4 (ENSRROG00000029994) #12	GSTA1 (ENSRROG00000044471) #14	ENSRROG00000041870	TMEM14A (ENSRROG00000041634) #17	ENSRROG00000030207	TRAM2 (ENSRROG00000036043) #18	EFHC1 (ENSRROG00000022951) #20	ENSRROG00000023565	ENSRROG00000039209	PAQR8 (ENSRROG00000006635) #21	MCM3 (ENSRROG00000045226) #22	ENSRROG00000040384	IL17F (ENSRROG00000010614) #23	ENSRROG00000043580 #24	IL17A (ENSRROG00000040427) #25	PKHD1 (ENSRROG00000035962) #26	TFAP2B (ENSRROG00000036382) #28	ENSRROG00000014074	TFAP2D (ENSRROG00000043555) #29
Black snub-nosed monkey	MODERN SPECIES	1471								LARS2 (ENSRBIG00000038739)	TMEM14A (ENSRBIG00000030712) #17	ENSRBIG00000042424	TRAM2 (ENSRBIG00000042642) #18	EFHC1 (ENSRBIG00000040029) #20	ENSRBIG00000021464	ENSRBIG00000032677	PAQR8 (ENSRBIG00000031177) #21	MCM3 (ENSRBIG00000036354) #22	ENSRBIG00000027505	IL17F (ENSRBIG00000036495) #23	ENSRBIG00000033175 #24	IL17A (ENSRBIG00000044223) #25	PKHD1 (ENSRBIG00000044462) #26	TFAP2B (ENSRBIG00000040359) #28	TFAP2D (ENSRBIG00000027596) #29	ENSRBIG00000027571	DEFB112 (ENSRBIG00000006289) #30	DEFB110 (ENSRBIG00000030990) #31	DEFB113 (ENSRBIG00000038298)	DEFB114 (ENSRBIG00000042286) #32
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00900000143764	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650
Vervet Monkey	MODERN SPECIES	8	KLHL31 (ENSCSAG00000013164)	GCLC (ENSCSAG00000013162)	ELOVL5 (ENSCSAG00000013156) #8	GCM1 (ENSCSAG00000013148) #9	FBXO9 (ENSCSAG00000013142) #10	CILK1 (ENSCSAG00000013132) #11	GSTA4 (ENSCSAG00000013126) #12	ENSCSAG00000013119	GSTA2 (ENSCSAG00000013108) #16	GSTA5 (ENSCSAG00000013097) #15	GSTA1 (ENSCSAG00000013074) #14	TMEM14A (ENSCSAG00000013069) #17	TRAM2 (ENSCSAG00000013065) #18	EFHC1 (ENSCSAG00000013059) #20	PAQR8 (ENSCSAG00000019294) #21	MCM3 (ENSCSAG00000013052) #22	IL17F (ENSCSAG00000013043) #23	IL17A (ENSCSAG00000013028) #25	ENSCSAG00000013016	PKHD1 (ENSCSAG00000013005) #26	TFAP2B (ENSCSAG00000012975) #28	TFAP2D (ENSCSAG00000012915) #29	DEFB110 (ENSCSAG00000012904) #31	DEFB113 (ENSCSAG00000012901)	DEFB114 (ENSCSAG00000012897) #32	ENSCSAG00000019295	CRISP1 (ENSCSAG00000012884) #33	PGK2 (ENSCSAG00000019296) #34	CRISP3 (ENSCSAG00000012862) #35	CRISP2 (ENSCSAG00000012852) #36	RHAG (ENSCSAG00000012820) #37
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00900000143764	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000000903.a.f.a.b.a	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00900000143764	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Pig-tailed macaque	MODERN SPECIES	174	KLHL31 (ENSMNEG00000033545)	ENSMNEG00000035875	GCLC (ENSMNEG00000035105)	ELOVL5 (ENSMNEG00000044116) #8	GCM1 (ENSMNEG00000037532) #9	FBXO9 (ENSMNEG00000041281) #10	CILK1 (ENSMNEG00000032820) #11	GSTA4 (ENSMNEG00000018065) #12	ENSMNEG00000034303	GSTA3 (ENSMNEG00000037930) #13	TMEM14A (ENSMNEG00000035396) #17	TRAM2 (ENSMNEG00000032001) #18	EFHC1 (ENSMNEG00000041404) #20	ENSMNEG00000007313	PAQR8 (ENSMNEG00000011526) #21	MCM3 (ENSMNEG00000035280) #22	IL17F (ENSMNEG00000038791) #23	ENSMNEG00000033057 #24	IL17A (ENSMNEG00000041013) #25	PKHD1 (ENSMNEG00000037126) #26	TFAP2B (ENSMNEG00000044465) #28	ENSMNEG00000011383	TFAP2D (ENSMNEG00000039212) #29	ENSMNEG00000044311	DEFB112 (ENSMNEG00000036563) #30	DEFB110 (ENSMNEG00000042902) #31	DEFB113 (ENSMNEG00000035185)	DEFB114 (ENSMNEG00000028375) #32	CRISP1 (ENSMNEG00000040906) #33	PGK2 (ENSMNEG00000038249) #34	CRISP3 (ENSMNEG00000035624) #35
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000164319 #13	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00390000007738
Rhesus	MODERN SPECIES	14	LRRC1 (ENSMMUG00000011049)	ENSMMUG00000059097	KLHL31 (ENSMMUG00000023789)	GCLC (ENSMMUG00000008684)	ELOVL5 (ENSMMUG00000006422) #8	GCM1 (ENSMMUG00000022083) #9	FBXO9 (ENSMMUG00000005340) #10	CILK1 (ENSMMUG00000005344) #11	ENSMMUG00000058208	GSTA4 (ENSMMUG00000014899) #12	GSTA2 (ENSMMUG00000017137) #13	TMEM14A (ENSMMUG00000060163) #17	TRAM2 (ENSMMUG00000013718) #18	EFHC1 (ENSMMUG00000013716) #20	PAQR8 (ENSMMUG00000052626) #21	MCM3 (ENSMMUG00000021149) #22	IL17F (ENSMMUG00000006691) #23	IL17A (ENSMMUG00000007403) #25	PKHD1 (ENSMMUG00000016993) #26	TFAP2B (ENSMMUG00000002869) #28	TFAP2D (ENSMMUG00000002867) #29	DEFB112 (ENSMMUG00000038276) #30	DEFB110 (ENSMMUG00000029616) #31	DEFB113 (ENSMMUG00000029617)	DEFB114 (ENSMMUG00000004191) #32	CRISP1 (ENSMMUG00000004190) #33	PGK2 (ENSMMUG00000011998) #34	CRISP3 (ENSMMUG00000019818) #35	ENSMMUG00000054154	ENSMMUG00000029619	ENSMMUG00000046373
Crab-eating macaque	MODERN SPECIES	14	COL9A1 (ENSMFAG00000031890)	COL19A1 (ENSMFAG00000031633)	LMBRD1 (ENSMFAG00000028262)	ENSMFAG00000050203	ADGRB3 (ENSMFAG00000003819)	ENSMFAG00000052667	EYS (ENSMFAG00000032080)	ENSMFAG00000064767	ENSMFAG00000064522	PHF3 (ENSMFAG00000046395)	PTP4A1 (ENSMFAG00000046284)	ENSMFAG00000059971	TRAM2 (ENSMFAG00000042433) #18	EFHC1 (ENSMFAG00000036082) #20	PAQR8 (ENSMFAG00000004629) #21	MCM3 (ENSMFAG00000001888) #22	IL17F (ENSMFAG00000044851) #23	IL17A (ENSMFAG00000059281) #25	PKHD1 (ENSMFAG00000031421) #26	TFAP2B (ENSMFAG00000046210) #28	TFAP2D (ENSMFAG00000040653) #29	DEFB112 (ENSMFAG00000035902) #30	DEFB110 (ENSMFAG00000045112) #31	DEFB113 (ENSMFAG00000052987)	DEFB114 (ENSMFAG00000039532) #32	CRISP1 (ENSMFAG00000035443) #33	PGK2 (ENSMFAG00000007944) #34	CRISP3 (ENSMFAG00000037975) #35	CRISP2 (ENSMFAG00000037005) #36	ENSMFAG00000043215	RHAG (ENSMFAG00000042670) #37
Cercopithecinae_b	ANCESTRAL SPECIES	18	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Olive baboon	MODERN SPECIES	16	ENSPANG00000041153	ELOVL5 (ENSPANG00000013429) #8	ENSPANG00000039030	ENSPANG00000042447	ENSPANG00000038301	GCM1 (ENSPANG00000037213) #9	FBXO9 (ENSPANG00000015587) #10	CILK1 (ENSPANG00000016921) #11	GSTA4 (ENSPANG00000007356) #12	GSTA1 (ENSPANG00000046442) #14	GSTA3 (ENSPANG00000017005) #13	TMEM14A (ENSPANG00000045952) #17	TRAM2 (ENSPANG00000005247) #18	EFHC1 (ENSPANG00000020492) #20	PAQR8 (ENSPANG00000005625) #21	MCM3 (ENSPANG00000017188) #22	IL17F (ENSPANG00000011221) #23	IL17A (ENSPANG00000043854) #25	ENSPANG00000024397	PKHD1 (ENSPANG00000020811) #26	TFAP2B (ENSPANG00000026000) #28	TFAP2D (ENSPANG00000017493) #29	DEFB112 (ENSPANG00000050890) #30	DEFB110 (ENSPANG00000006857) #31	DEFB113 (ENSPANG00000015184)	DEFB114 (ENSPANG00000009022) #32	ENSPANG00000008642	CRISP1 (ENSPANG00000005250) #33	PGK2 (ENSPANG00000003184) #34	CRISP2 (ENSPANG00000020813) #36	ENSPANG00000036186
Cercopithecinae_d	ANCESTRAL SPECIES	13	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000164034.a #14	ENSGT00940000164034.b #16	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00910000147663	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000157863.h	ENSGT00940000156618 #23	ENSGT00910000147062 #24	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Drill	MODERN SPECIES	817	ELOVL5 (ENSMLEG00000041247) #8	ENSMLEG00000004252	GCM1 (ENSMLEG00000035639) #9	FBXO9 (ENSMLEG00000043788) #10	CILK1 (ENSMLEG00000006267) #11	GSTA4 (ENSMLEG00000042277) #12	GSTA3 (ENSMLEG00000037252) #13	GSTA5 (ENSMLEG00000036948) #15	GSTA1 (ENSMLEG00000043178) #14	GSTA2 (ENSMLEG00000027727) #16	TMEM14A (ENSMLEG00000043906) #17	TRAM2 (ENSMLEG00000040892) #18	EFHC1 (ENSMLEG00000029768) #20	ENSMLEG00000027940	PAQR8 (ENSMLEG00000013701) #21	MCM3 (ENSMLEG00000041965) #22	ENSMLEG00000038466	IL17F (ENSMLEG00000024263) #23	ENSMLEG00000041887 #24	IL17A (ENSMLEG00000031459) #25	PKHD1 (ENSMLEG00000043301) #26
Sooty mangabey	MODERN SPECIES	97	KLHL31 (ENSCATG00000044715)	ENSCATG00000018676	GCLC (ENSCATG00000033054)	ELOVL5 (ENSCATG00000041100) #8	GCM1 (ENSCATG00000008922) #9	FBXO9 (ENSCATG00000019206) #10	CILK1 (ENSCATG00000041316) #11	GSTA4 (ENSCATG00000027052) #12	ENSCATG00000040439	GSTA2 (ENSCATG00000033148) #16	TMEM14A (ENSCATG00000043586) #17	TRAM2 (ENSCATG00000029584) #18	EFHC1 (ENSCATG00000038309) #20	ENSCATG00000021876	PAQR8 (ENSCATG00000020608) #21	MCM3 (ENSCATG00000031333) #22	IL17F (ENSCATG00000041329) #23	ENSCATG00000035212 #24	IL17A (ENSCATG00000036902) #25	PKHD1 (ENSCATG00000039572) #26	TFAP2B (ENSCATG00000033725) #28	TFAP2D (ENSCATG00000031294) #29	ENSCATG00000040634	DEFB112 (ENSCATG00000031101) #30	DEFB110 (ENSCATG00000038500) #31	DEFB113 (ENSCATG00000031427)	DEFB114 (ENSCATG00000033669) #32	ENSCATG00000038484	CRISP1 (ENSCATG00000039100) #33	PGK2 (ENSCATG00000021299) #34	CRISP3 (ENSCATG00000039496) #35
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES																	ENSGT01050000244824.B.fb #22
Cebidae	ANCESTRAL SPECIES																	ENSGT01050000244824.B.fb #22
Marmoset	MODERN SPECIES	12	FTO (ENSCJAG00000001425)	IRX3 (ENSCJAG00000001418)	ENSCJAG00000084160	IRX5 (ENSCJAG00000012968)	IRX6 (ENSCJAG00000012962)	MMP2 (ENSCJAG00000012929)	LPCAT2 (ENSCJAG00000012902)	SLC6A2 (ENSCJAG00000012830)	ENSCJAG00000076318	ENSCJAG00000038677	GNAO1 (ENSCJAG00000012765)	AMFR (ENSCJAG00000012741)	NUDT21 (ENSCJAG00000053553)	OGFOD1 (ENSCJAG00000012630)	BBS2 (ENSCJAG00000012681)	ENSCJAG00000012664 #22	MT4 (ENSCJAG00000012675)	MT3 (ENSCJAG00000080783)	ENSCJAG00000071755	ENSCJAG00000072438	ENSCJAG00000083624	ENSCJAG00000066047	ENSCJAG00000086098	ENSCJAG00000080825	NUP93 (ENSCJAG00000012507)	SLC12A3 (ENSCJAG00000012443)	HERPUD1 (ENSCJAG00000012357)	CETP (ENSCJAG00000012329)	NLRC5 (ENSCJAG00000012266)	CPNE2 (ENSCJAG00000012206)	PSME3IP1 (ENSCJAG00000012189)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000000938.p.a	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319.a.a #13	ENSGT00940000164034 #14	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Cebidae	ANCESTRAL SPECIES	5	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000000938.p.a	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319.a.a #13	ENSGT00940000164034 #14	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Cebidae_a	ANCESTRAL SPECIES	25	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000000938.p.a	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319.a.a #13	ENSGT00940000164319.a.b #13	ENSGT00940000163367 #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B.gb #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00950000183133.f
Bolivian squirrel monkey	MODERN SPECIES	49	ENSSBOG00000021715	HSD17B8 (ENSSBOG00000033905)	SLC39A7 (ENSSBOG00000027575)	RXRB (ENSSBOG00000028234)	COL11A2 (ENSSBOG00000030814)	HLA-DPB1 (ENSSBOG00000023374)	HLA-DPA1 (ENSSBOG00000026139)	HLA-DOA (ENSSBOG00000022957)	ENSSBOG00000033070	ENSSBOG00000034712	HLA-DMA (ENSSBOG00000020585)	HLA-DMB (ENSSBOG00000028499)	TRAM2 (ENSSBOG00000033153) #18	EFHC1 (ENSSBOG00000023512) #20	PAQR8 (ENSSBOG00000008561) #21	MCM3 (ENSSBOG00000019946) #22	IL17F (ENSSBOG00000022387) #23	IL17A (ENSSBOG00000031117) #25	PKHD1 (ENSSBOG00000026830) #26	ENSSBOG00000033280	TFAP2B (ENSSBOG00000021734) #28	TFAP2D (ENSSBOG00000033191) #29	DEFB112 (ENSSBOG00000031354) #30	DEFB110 (ENSSBOG00000019583) #31	DEFB113 (ENSSBOG00000035856)	DEFB114 (ENSSBOG00000036180) #32	ENSSBOG00000025633	CRISP1 (ENSSBOG00000031933) #33	PGK2 (ENSSBOG00000018220) #34	CRISP3 (ENSSBOG00000026829) #35	CRISP2 (ENSSBOG00000012807) #36
Capuchin	MODERN SPECIES	148	ELOVL5 (ENSCCAG00000037812) #8	ENSCCAG00000036125	GCM1 (ENSCCAG00000035036) #9	FBXO9 (ENSCCAG00000034208) #10	ENSCCAG00000033768	CILK1 (ENSCCAG00000036719) #11	GSTA4 (ENSCCAG00000021314) #12	ENSCCAG00000030512	ENSCCAG00000024288 #13	ENSCCAG00000003496 #13	TMEM14A (ENSCCAG00000035958) #17	TRAM2 (ENSCCAG00000023806) #18	EFHC1 (ENSCCAG00000016309) #20	PAQR8 (ENSCCAG00000007857) #21	ENSCCAG00000032332	MCM3 (ENSCCAG00000034476) #22	IL17F (ENSCCAG00000031579) #23	ENSCCAG00000024543	C17orf58 (ENSCCAG00000037327)	BPTF (ENSCCAG00000025806)	ENSCCAG00000000617	ENSCCAG00000030090	NOL11 (ENSCCAG00000021153)	PITPNC1 (ENSCCAG00000032031)	ENSCCAG00000035221	PSMD12 (ENSCCAG00000033167)	ENSCCAG00000004672	ENSCCAG00000025885
Marmoset	MODERN SPECIES	16	ELOVL5 (ENSCJAG00000011119) #8	GCM1 (ENSCJAG00000079175) #9	FBXO9 (ENSCJAG00000042701) #10	CILK1 (ENSCJAG00000011214) #11	GSTA4 (ENSCJAG00000011268) #12	ENSCJAG00000034823	ENSCJAG00000060605 #13	ENSCJAG00000066217 #14	TMEM14A (ENSCJAG00000011309) #17	ENSCJAG00000082568	TRAM2 (ENSCJAG00000011314) #18	EFHC1 (ENSCJAG00000011346) #20	PAQR8 (ENSCJAG00000011379) #21	ENSCJAG00000080195	ENSCJAG00000080533	ENSCJAG00000011389 #22	IL17F (ENSCJAG00000043579) #23	IL17A (ENSCJAG00000011432) #25	PKHD1 (ENSCJAG00000011434) #26	ENSCJAG00000078173	TFAP2B (ENSCJAG00000011561) #28	TFAP2D (ENSCJAG00000011580) #29	ENSCJAG00000083090	DEFB112 (ENSCJAG00000052292) #30	DEFB110 (ENSCJAG00000076216) #31	DEFB113 (ENSCJAG00000011605)	DEFB114 (ENSCJAG00000011608) #32	ENSCJAG00000011612	CRISP1 (ENSCJAG00000011614) #33	PGK2 (ENSCJAG00000022394) #34	CRISP2 (ENSCJAG00000047298) #36
Mas night monkey	MODERN SPECIES	993	ELOVL5 (ENSANAG00000027703) #8	ENSANAG00000031805	GCM1 (ENSANAG00000018757) #9	FBXO9 (ENSANAG00000037929) #10	CILK1 (ENSANAG00000018446) #11	GSTA4 (ENSANAG00000037353) #12	ENSANAG00000014954	ENSANAG00000037760 #13	ENSANAG00000016846 #13	TMEM14A (ENSANAG00000021933) #17	ENSANAG00000030800	TRAM2 (ENSANAG00000024793) #18	EFHC1 (ENSANAG00000032647) #20	ENSANAG00000030513	PAQR8 (ENSANAG00000003283) #21	MCM3 (ENSANAG00000024257) #22	IL17F (ENSANAG00000036118) #23	IL17A (ENSANAG00000036235) #25	PKHD1 (ENSANAG00000022549) #26	TFAP2B (ENSANAG00000019812) #28	TFAP2D (ENSANAG00000026393) #29	DEFB112 (ENSANAG00000036019) #30	DEFB110 (ENSANAG00000027463) #31	DEFB113 (ENSANAG00000028898)	DEFB114 (ENSANAG00000028900) #32	ENSANAG00000030784	CRISP1 (ENSANAG00000033292) #33	PGK2 (ENSANAG00000011649) #34	CRISP3 (ENSANAG00000035593) #35	CRISP2 (ENSANAG00000022988) #36	RHAG (ENSANAG00000024380) #37
Tarsier	MODERN SPECIES	3009															PAQR8 (ENSTSYG00000010045) #21	MCM3 (ENSTSYG00000012610) #22	IL17F (ENSTSYG00000014142) #23	IL17A (ENSTSYG00000011180) #25
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.e.b	ENSGT00940000163367 #15	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.e.b	ENSGT00940000163367 #15	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00910000147043	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629
Mouse lemur	MODERN SPECIES	28	ENSMICG00000011320	ELOVL5 (ENSMICG00000004038) #8	ENSMICG00000042951	GCM1 (ENSMICG00000030765) #9	FBXO9 (ENSMICG00000008924) #10	CILK1 (ENSMICG00000038462) #11	GSTA4 (ENSMICG00000005858) #12	ENSMICG00000029781	ENSMICG00000041824	ENSMICG00000001561	ENSMICG00000026922	ENSMICG00000042743 #17	TRAM2 (ENSMICG00000032391) #18	EFHC1 (ENSMICG00000004321) #20	PAQR8 (ENSMICG00000044671) #21	MCM3 (ENSMICG00000011430) #22	IL17F (ENSMICG00000026740) #23	IL17A (ENSMICG00000043002) #25	PKHD1 (ENSMICG00000008392) #26	TFAP2B (ENSMICG00000017317) #28	TFAP2D (ENSMICG00000005507) #29	ENSMICG00000047064	DEFB110 (ENSMICG00000047331) #31	DEFB113 (ENSMICG00000032756)	DEFB114 (ENSMICG00000044264) #32	CRISP1 (ENSMICG00000002786) #33	CRISP3 (ENSMICG00000002617) #35	CRISP2 (ENSMICG00000014964) #36	RHAG (ENSMICG00000008366) #37	ENSMICG00000046680	GLYATL3 (ENSMICG00000002636)
Lemuriformes_a	ANCESTRAL SPECIES	4	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000163367 #15	ENSGT00940000154526.h.e.a	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Coquerels sifaka	MODERN SPECIES	412	KLHL31 (ENSPCOG00000028812)	GCLC (ENSPCOG00000020387)	ELOVL5 (ENSPCOG00000019780) #8	GCM1 (ENSPCOG00000013341) #9	FBXO9 (ENSPCOG00000011211) #10	CILK1 (ENSPCOG00000025293) #11	GSTA4 (ENSPCOG00000024795) #12	ENSPCOG00000017536	GSTA5 (ENSPCOG00000020631) #15	ENSPCOG00000018411	ENSPCOG00000027305	TMEM14A (ENSPCOG00000019026) #17	TRAM2 (ENSPCOG00000020466) #18	EFHC1 (ENSPCOG00000026614) #20	PAQR8 (ENSPCOG00000013953) #21	MCM3 (ENSPCOG00000014588) #22	IL17F (ENSPCOG00000018992) #23	ENSPCOG00000015611	IL17A (ENSPCOG00000021965) #25	PKHD1 (ENSPCOG00000025913) #26	TFAP2B (ENSPCOG00000019712) #28	TFAP2D (ENSPCOG00000023340) #29	ENSPCOG00000019467	DUSP26 (ENSPCOG00000023702)	RNF122 (ENSPCOG00000018082)	TTI2 (ENSPCOG00000018445)	ENSPCOG00000018065	FUT10 (ENSPCOG00000025506)	NRG1 (ENSPCOG00000015684)	WRN (ENSPCOG00000012938)	PURG (ENSPCOG00000005104)
Greater bamboo lemur	MODERN SPECIES	655									ENSPSMG00000016493	ENSPSMG00000016475 #15	ENSPSMG00000016464	TMEM14A (ENSPSMG00000016417) #17	TRAM2 (ENSPSMG00000016397) #18	EFHC1 (ENSPSMG00000016338) #20	PAQR8 (ENSPSMG00000016211) #21	MCM3 (ENSPSMG00000016201) #22	IL17F (ENSPSMG00000016144) #23	IL17A (ENSPSMG00000016139) #25	PKHD1 (ENSPSMG00000016108) #26	TFAP2B (ENSPSMG00000015936) #28	TFAP2D (ENSPSMG00000015932) #29	ENSPSMG00000015914	DEFB113 (ENSPSMG00000015905)	DEFB114 (ENSPSMG00000015897) #32	CRISP1 (ENSPSMG00000015890) #33	PGK2 (ENSPSMG00000015865) #34	CRISP3 (ENSPSMG00000015857) #35	CRISP2 (ENSPSMG00000015837) #36	ENSPSMG00000015791	RHAG (ENSPSMG00000015777) #37	ENSPSMG00000015759
Bushbaby	MODERN SPECIES	150	GCLC (ENSOGAG00000007018)	ELOVL5 (ENSOGAG00000004272) #8	GCM1 (ENSOGAG00000007879) #9	FBXO9 (ENSOGAG00000007875) #10	CILK1 (ENSOGAG00000007868) #11	GSTA4 (ENSOGAG00000007865) #12	ENSOGAG00000031992	GSTA5 (ENSOGAG00000032237) #15	ENSOGAG00000003726	ENSOGAG00000026926	ENSOGAG00000014699	TMEM14A (ENSOGAG00000014698) #17	TRAM2 (ENSOGAG00000011863) #18	EFHC1 (ENSOGAG00000015937) #20	PAQR8 (ENSOGAG00000027916) #21	MCM3 (ENSOGAG00000015546) #22	ENSOGAG00000015545 #23	IL17A (ENSOGAG00000015542) #25	PKHD1 (ENSOGAG00000015530) #26	ENSOGAG00000024262
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Tree shrew	MODERN SPECIES	436																MCM3 (ENSTBEG00000002019) #22	IL17F (ENSTBEG00000001700) #23	IL17A (ENSTBEG00000000474) #25
Glires	ANCESTRAL SPECIES	5	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Lagomorpha	ANCESTRAL SPECIES	2	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000154526.h.i.b	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738
Rabbit	MODERN SPECIES	3	GCLC (ENSOCUG00000012805)	ELOVL5 (ENSOCUG00000011469) #8	GCM1 (ENSOCUG00000009246) #9	FBXO9 (ENSOCUG00000011388) #10	CILK1 (ENSOCUG00000027465) #11	GSTA4 (ENSOCUG00000003680) #12	ENSOCUG00000034994 #13	GSTA5 (ENSOCUG00000029486) #15	ENSOCUG00000012902 #15	ENSOCUG00000038012	ENSOCUG00000012895	TRAM2 (ENSOCUG00000012094) #18	EFHC1 (ENSOCUG00000012087) #20	PAQR8 (ENSOCUG00000003946) #21	IL17F (ENSOCUG00000004271) #23	MCM3 (ENSOCUG00000004273) #22	IL17A (ENSOCUG00000004270) #25	PKHD1 (ENSOCUG00000004246) #26	TFAP2B (ENSOCUG00000025542) #28	TFAP2D (ENSOCUG00000025550) #29	DEFB110 (ENSOCUG00000015973) #31	ENSOCUG00000024437	DEFB113 (ENSOCUG00000022579)	DEFB114 (ENSOCUG00000032209) #32	ENSOCUG00000039348	ENSOCUG00000032803	ENSOCUG00000035733	CRISP1 (ENSOCUG00000025156) #33	CRISP3 (ENSOCUG00000012801) #35	CRISP2 (ENSOCUG00000022149) #36	RHAG (ENSOCUG00000016186) #37
Pika	MODERN SPECIES	5013										ENSOPRG00000016044 #15	ENSOPRG00000016033	TMEM14A (ENSOPRG00000016026) #17	TRAM2 (ENSOPRG00000016017) #18	EFHC1 (ENSOPRG00000015995) #20	PAQR8 (ENSOPRG00000015992) #21	MCM3 (ENSOPRG00000015977) #22	IL17F (ENSOPRG00000015973) #23
Rodentia	ANCESTRAL SPECIES	6	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Rodentia_B	ANCESTRAL SPECIES	8	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738
Myomorpha	ANCESTRAL SPECIES	11									ENSGT00940000154526.h.i.b	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738
Muroidea	ANCESTRAL SPECIES	42									ENSGT00940000154526.h.i.b	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738
Muroidea_A	ANCESTRAL SPECIES	8	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000154353.A	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a #15	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00840000130532	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Cricetidae	ANCESTRAL SPECIES	9	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000163367.g.a #15	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000156439.k #36	ENSGT00940000162013 #35	ENSGT00840000130532	ENSGT00940000156439.l #36	ENSGT00950000182844.b.a #37
Cricetinae	ANCESTRAL SPECIES	28	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.b	ENSGT00940000155933.b.a	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a #15	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT01000000215862	ENSGT00940000156439.l #36	ENSGT00950000182844.b.a #37	ENSGT00390000007738	ENSGT00950000183133.f	ENSGT00390000005599
Chinese hamster chok1gshd	MODERN SPECIES	165	Fam135a (ENSCGRG00001014193)	Sdhaf4 (ENSCGRG00001020774)	Smap1 (ENSCGRG00001022239)	B3gat2 (ENSCGRG00001020528)	Ogfrl1 (ENSCGRG00001008053)	Rims1 (ENSCGRG00001019526)	ENSCGRG00001017322	Kcnq5 (ENSCGRG00001009953)	ENSCGRG00001021036	ENSCGRG00001017591 #15	Gsta3 (ENSCGRG00001023755) #15	Tmem14a (ENSCGRG00001009902) #17	Tram2 (ENSCGRG00001015106) #18	Efhc1 (ENSCGRG00001022397) #20	Paqr8 (ENSCGRG00001004665) #21	Mcm3 (ENSCGRG00001009748) #22	Il17f (ENSCGRG00001020910) #23	Il17a (ENSCGRG00001015169) #25	Pkhd1 (ENSCGRG00001020061) #26	Tfap2b (ENSCGRG00001014115) #28	Tfap2d (ENSCGRG00001003273) #29	Crisp4 (ENSCGRG00001015574) #33	Pgk2 (ENSCGRG00001002124) #34	ENSCGRG00001000239 #35	ENSCGRG00001018785	Crisp2 (ENSCGRG00001007053) #36	Rhag (ENSCGRG00001011984) #37	9130008F23Rik (ENSCGRG00001006784)	Glyatl3 (ENSCGRG00001016869)	Cenpq (ENSCGRG00001010699)	Mmut (ENSCGRG00001019456)
Golden Hamster	MODERN SPECIES	649					B3gat2 (ENSMAUG00000012703)	ENSMAUG00000009953	ENSMAUG00000017764	ENSMAUG00000011817	Kcnq5 (ENSMAUG00000012668)	ENSMAUG00000013236 #15	Gsta3 (ENSMAUG00000014278) #15	Tmem14a (ENSMAUG00000014884) #17	Tram2 (ENSMAUG00000001094) #18	Efhc1 (ENSMAUG00000010139) #20	Paqr8 (ENSMAUG00000011171) #21	Mcm3 (ENSMAUG00000012859) #22	Il17f (ENSMAUG00000014457) #23	Il17a (ENSMAUG00000014054) #25	Pkhd1 (ENSMAUG00000017819) #26	Tfap2b (ENSMAUG00000017922) #28	Tfap2d (ENSMAUG00000004727) #29	Defb41 (ENSMAUG00000005698) #31	Crisp4 (ENSMAUG00000007766) #33	Pgk2 (ENSMAUG00000017658) #34	ENSMAUG00000009650 #35	ENSMAUG00000017696	ENSMAUG00000010754	Crisp2 (ENSMAUG00000008482) #36	Rhag (ENSMAUG00000010616) #37	9130008F23Rik (ENSMAUG00000012110)	Glyatl3 (ENSMAUG00000013095)
Cricetidae_B	ANCESTRAL SPECIES	12	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154526.h.i.b	ENSGT00940000163367.g.a #15	ENSGT00940000158206 #17	ENSGT00940000166012	ENSGT00940000163367.h #15	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34
Prairie vole	MODERN SPECIES	135													Tram2 (ENSMOCG00000018961) #18	Efhc1 (ENSMOCG00000012258) #20	Paqr8 (ENSMOCG00000011453) #21	Mcm3 (ENSMOCG00000006791) #22	Il17f (ENSMOCG00000005401) #23	Il17a (ENSMOCG00000000135) #25	Pkhd1 (ENSMOCG00000020192) #26	Tfap2b (ENSMOCG00000015002) #28	Tfap2d (ENSMOCG00000015633) #29	Defb41 (ENSMOCG00000014245) #31	Crisp4 (ENSMOCG00000001532) #33	Pgk2 (ENSMOCG00000022317) #34
Northern American deer mouse	MODERN SPECIES	13	Foxp4 (ENSPEMG00000022403)	1700122O11Rik (ENSPEMG00000001711)	1700067P10Rik (ENSPEMG00000010780)	ENSPEMG00000031001	ENSPEMG00000029261	ENSPEMG00000004910	ENSPEMG00000023708	Gsta3 (ENSPEMG00000002630) #15	ENSPEMG00000015141 #15	Tmem14a (ENSPEMG00000020022) #17	ENSPEMG00000027417	ENSPEMG00000031008 #15	Tram2 (ENSPEMG00000006945) #18	Efhc1 (ENSPEMG00000014331) #20	Paqr8 (ENSPEMG00000019532) #21	Mcm3 (ENSPEMG00000019473) #22	Il17f (ENSPEMG00000019678) #23	Il17a (ENSPEMG00000020016) #25	Pkhd1 (ENSPEMG00000030256) #26	ENSPEMG00000026183	ENSPEMG00000029888	Tfap2b (ENSPEMG00000020723) #28	Tfap2d (ENSPEMG00000012171) #29	Mmut (ENSPEMG00000009713)	Cenpq (ENSPEMG00000013318)	Glyatl3 (ENSPEMG00000000995)	9130008F23Rik (ENSPEMG00000002757)	ENSPEMG00000027470	Rhag (ENSPEMG00000003150) #37	Crisp2 (ENSPEMG00000022961) #36	ENSPEMG00000030274
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.b	ENSGT00940000154526.h.j	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT01000000215862	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00840000130532.a.a	ENSGT00840000130532.b.a.b	ENSGT00840000130532.b.a.a
Mus	ANCESTRAL SPECIES	5	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000162362 #33
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000162362 #33	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Mus_B	ANCESTRAL SPECIES	21	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000182985.b.b	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a.b	ENSGT00940000163367.g.b #15	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000162362 #33	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Mouse	MODERN SPECIES		Sdhaf4 (ENSMUSG00000026154)	Smap1 (ENSMUSG00000026155)	B3gat2 (ENSMUSG00000026156)	Ogfrl1 (ENSMUSG00000026158)	Ppp1r14bl (ENSMUSG00000073730)	Rims1 (ENSMUSG00000041670)	Kcnq5 (ENSMUSG00000028033)	Khdc1b (ENSMUSG00000085079)	Khdc1c (ENSMUSG00000041722)	Khdc1a (ENSMUSG00000067750)	Gsta3 (ENSMUSG00000025934) #15	Tmem14a (ENSMUSG00000025933) #17	Tram2 (ENSMUSG00000041779) #18	Efhc1 (ENSMUSG00000041809) #20	Paqr8 (ENSMUSG00000025931) #21	Mcm3 (ENSMUSG00000041859) #22	Il17f (ENSMUSG00000041872) #23	Il17a (ENSMUSG00000025929) #25	Pkhd1 (ENSMUSG00000043760) #26	Tfap2b (ENSMUSG00000025927) #28	Tfap2d (ENSMUSG00000042596) #29	Defb41 (ENSMUSG00000067773) #31	Defb18 (ENSMUSG00000073735)	Crisp4 (ENSMUSG00000025774) #33	Crispld1 (ENSMUSG00000025776)	Pi15 (ENSMUSG00000067780)	Gdap1 (ENSMUSG00000025777)	Jph1 (ENSMUSG00000042686)	Ly96 (ENSMUSG00000025779)	Tmem70 (ENSMUSG00000025940)	Eloc (ENSMUSG00000079658)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00390000002581	ENSGT00940000158276	ENSGT00940000157935	ENSGT00940000157565	ENSGT00390000009155	ENSGT00940000155884	ENSGT00940000159583	ENSGT00390000018730.B	ENSGT00950000182985.b.b	ENSGT00940000155134	ENSGT00940000155933.b.a	ENSGT00940000154353.A.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000162362 #33	ENSGT00940000156473	ENSGT00940000158635	ENSGT00940000159124	ENSGT00940000156130.b	ENSGT00390000000742	ENSGT00390000018710	ENSGT00390000011717
Steppe mouse	MODERN SPECIES	3008											Gsta3 (ENSMSIG00000030752) #15	ENSMSIG00000030749	Tram2 (ENSMSIG00000030743) #18	Efhc1 (ENSMSIG00000030737) #20	Paqr8 (ENSMSIG00000030732) #21	Mcm3 (ENSMSIG00000030719) #22	Il17f (ENSMSIG00000030717) #23	Il17a (ENSMSIG00000030714) #25	Pkhd1 (ENSMSIG00000030694) #26
spretus	MODERN SPECIES		Col19a1 (MGP_SPRETEiJ_G0014804)	Col9a1 (MGP_SPRETEiJ_G0014803)	Fam135a (MGP_SPRETEiJ_G0014802)	Sdhaf4 (MGP_SPRETEiJ_G0014801)	Smap1 (MGP_SPRETEiJ_G0014800)	B3gat2 (MGP_SPRETEiJ_G0014799)	Ogfrl1 (MGP_SPRETEiJ_G0014798)	Ppp1r14bl (MGP_SPRETEiJ_G0014797)	MGP_SPRETEiJ_G0014796	Kcnq5 (MGP_SPRETEiJ_G0014795)	Gsta3 (MGP_SPRETEiJ_G0014794) #15	MGP_SPRETEiJ_G0014793 #17	Tram2 (MGP_SPRETEiJ_G0014792) #18	Efhc1 (MGP_SPRETEiJ_G0014791) #20	Paqr8 (MGP_SPRETEiJ_G0014790) #21	Mcm3 (MGP_SPRETEiJ_G0014789) #22	Il17f (MGP_SPRETEiJ_G0014788) #23	Il17a (MGP_SPRETEiJ_G0014787) #25	MGP_SPRETEiJ_G0014786 #26	Tfap2b (MGP_SPRETEiJ_G0014785) #28	Tfap2d (MGP_SPRETEiJ_G0014784) #29	Defb41 (MGP_SPRETEiJ_G0014783) #31	Defb18 (MGP_SPRETEiJ_G0014782)	Crisp4 (MGP_SPRETEiJ_G0014781) #33	Crispld1 (MGP_SPRETEiJ_G0014780)	Pi15 (MGP_SPRETEiJ_G0014779)	Gdap1 (MGP_SPRETEiJ_G0014778)	Jph1 (MGP_SPRETEiJ_G0014777)	Ly96 (MGP_SPRETEiJ_G0014776)	Tmem70 (MGP_SPRETEiJ_G0014775)	Eloc (MGP_SPRETEiJ_G0014774)
Ryukyu mouse	MODERN SPECIES		Col9a1 (MGP_CAROLIEiJ_G0013999)	Fam135a (MGP_CAROLIEiJ_G0013998)	Sdhaf4 (MGP_CAROLIEiJ_G0013997)	Smap1 (MGP_CAROLIEiJ_G0013996)	B3gat2 (MGP_CAROLIEiJ_G0013995)	Ogfrl1 (MGP_CAROLIEiJ_G0013994)	Ppp1r14bl (MGP_CAROLIEiJ_G0013993)	MGP_CAROLIEiJ_G0013992	MGP_CAROLIEiJ_G0013991	MGP_CAROLIEiJ_G0013990	MGP_CAROLIEiJ_G0013989	Tmem14a (MGP_CAROLIEiJ_G0013988) #17	Tram2 (MGP_CAROLIEiJ_G0013987) #18	Efhc1 (MGP_CAROLIEiJ_G0013986) #20	Paqr8 (MGP_CAROLIEiJ_G0013985) #21	Mcm3 (MGP_CAROLIEiJ_G0013984) #22	Il17f (MGP_CAROLIEiJ_G0013983) #23	Il17a (MGP_CAROLIEiJ_G0013982) #25	Pkhd1 (MGP_CAROLIEiJ_G0013981) #26	Tfap2b (MGP_CAROLIEiJ_G0013980) #28	Tfap2d (MGP_CAROLIEiJ_G0013979) #29	Defb41 (MGP_CAROLIEiJ_G0013978) #31	Defb18 (MGP_CAROLIEiJ_G0013977)	Crisp4 (MGP_CAROLIEiJ_G0013976) #33	Crispld1 (MGP_CAROLIEiJ_G0013975)	Pi15 (MGP_CAROLIEiJ_G0013974)	Gdap1 (MGP_CAROLIEiJ_G0013973)	Jph1 (MGP_CAROLIEiJ_G0013972)	Ly96 (MGP_CAROLIEiJ_G0013971)	Tmem70 (MGP_CAROLIEiJ_G0013970)	Eloc (MGP_CAROLIEiJ_G0013969)
Shrew mouse	MODERN SPECIES	18	Col19a1 (MGP_PahariEiJ_G0027249)	Col9a1 (MGP_PahariEiJ_G0027248)	Fam135a (MGP_PahariEiJ_G0027247)	Sdhaf4 (MGP_PahariEiJ_G0027246)	Smap1 (MGP_PahariEiJ_G0027245)	B3gat2 (MGP_PahariEiJ_G0027244)	MGP_PahariEiJ_G0027243	Ppp1r14bl (MGP_PahariEiJ_G0027242)	MGP_PahariEiJ_G0027241	Kcnq5 (MGP_PahariEiJ_G0027240)	Gsta3 (MGP_PahariEiJ_G0027239) #15	Tmem14a (MGP_PahariEiJ_G0027238) #17	Tram2 (MGP_PahariEiJ_G0027237) #18	Efhc1 (MGP_PahariEiJ_G0027236) #20	Paqr8 (MGP_PahariEiJ_G0027235) #21	Mcm3 (MGP_PahariEiJ_G0027234) #22	Il17f (MGP_PahariEiJ_G0027233) #23	Il17a (MGP_PahariEiJ_G0027232) #25	Pkhd1 (MGP_PahariEiJ_G0027231) #26	Tfap2b (MGP_PahariEiJ_G0027230) #28	Tfap2d (MGP_PahariEiJ_G0027229) #29	Defb41 (MGP_PahariEiJ_G0027228) #31	Defb18 (MGP_PahariEiJ_G0027227)	Crisp4 (MGP_PahariEiJ_G0027226) #33
Rat	MODERN SPECIES	19	Rims1 (ENSRNOG00000011000)	Kcnq5 (ENSRNOG00000013781)	AABR07067042.3 (ENSRNOG00000052878)	Khdc1 (ENSRNOG00000028595)	Gsta6 (ENSRNOG00000033402)	Tmem14a (ENSRNOG00000046593) #17	Rpl10a-ps1 (ENSRNOG00000063674)	Gsta1 (ENSRNOG00000013484) #15	ENSRNOG00000064063	Gsta3 (ENSRNOG00000056847) #15	Tmem14a (ENSRNOG00000013238) #17	RGD1562107 (ENSRNOG00000024755)	Tram2 (ENSRNOG00000013046) #18	Efhc1 (ENSRNOG00000042729) #20	Paqr8 (ENSRNOG00000067120) #21	Mcm3 (ENSRNOG00000012543) #22	Il17f (ENSRNOG00000012509) #23	Il17a (ENSRNOG00000012467) #25	Pkhd1 (ENSRNOG00000058742) #26	Tfap2b (ENSRNOG00000011823) #28	Tfap2d (ENSRNOG00000011642) #29	ENSRNOG00000064433	ENSRNOG00000069864	Defb16 (ENSRNOG00000066154)	Defb18 (ENSRNOG00000039650)	Defb49 (ENSRNOG00000039651)	Crisp1 (ENSRNOG00000013612) #33	ENSRNOG00000066520	Pgk2 (ENSRNOG00000013600) #34	Crisp3 (ENSRNOG00000013496) #35	ENSRNOG00000066672
Upper Galilee mountains blind mole rat	MODERN SPECIES	1882										ENSNGAG00000011078 #15	ENSNGAG00000008046 #15	ENSNGAG00000018209 #17	Tram2 (ENSNGAG00000003316) #18	Efhc1 (ENSNGAG00000015995) #20	Paqr8 (ENSNGAG00000019180) #21	Mcm3 (ENSNGAG00000009877) #22	Il17f (ENSNGAG00000019809) #23	Il17a (ENSNGAG00000003868) #25	Pkhd1 (ENSNGAG00000009481) #26	Tfap2b (ENSNGAG00000011310) #28	Tfap2d (ENSNGAG00000020572) #29	ENSNGAG00000008579	Defb18 (ENSNGAG00000009235)	ENSNGAG00000000040 #33	ENSNGAG00000000270 #34	ENSNGAG00000008808 #35	ENSNGAG00000000227 #36	Rhag (ENSNGAG00000014043) #37	9130008F23Rik (ENSNGAG00000014630)	Glyatl3 (ENSNGAG00000017110)	Cenpq (ENSNGAG00000006423)
Lesser Egyptian jerboa	MODERN SPECIES	41	ENSJJAG00000018259	Cdc42bpb (ENSJJAG00000021480)	Tnfrsf21 (ENSJJAG00000021218)	ENSJJAG00000021681	Cd2ap (ENSJJAG00000018750)	Adgrf2 (ENSJJAG00000016491)	Adgrf4 (ENSJJAG00000022843)	Opn5 (ENSJJAG00000023915)	Ptchd4 (ENSJJAG00000012388)	ENSJJAG00000004017	Mmut (ENSJJAG00000020693)	ENSJJAG00000002394	Cenpq (ENSJJAG00000016270)	Glyatl3 (ENSJJAG00000016081)	Rhag (ENSJJAG00000017373) #37	Mcm3 (ENSJJAG00000019109) #22	Il17f (ENSJJAG00000020203) #23	Il17a (ENSJJAG00000003345) #25	Pkhd1 (ENSJJAG00000020101) #26	Tfap2b (ENSJJAG00000018867) #28	Tfap2d (ENSJJAG00000013114) #29	ENSJJAG00000000785 #33	ENSJJAG00000020807 #35	Pgk2 (ENSJJAG00000003644) #34	Crisp2 (ENSJJAG00000018523) #36	ENSJJAG00000021834	Gsta3 (ENSJJAG00000022357) #15	ENSJJAG00000022957 #17	Tram2 (ENSJJAG00000019249) #18	Efhc1 (ENSJJAG00000019979) #20	Paqr8 (ENSJJAG00000002669) #21
Kangaroo rat	MODERN SPECIES	363	Tinag (ENSDORG00000011595)	ENSDORG00000011594	Lrrc1 (ENSDORG00000010229)	Klhl31 (ENSDORG00000027643)	Gclc (ENSDORG00000026700)	Elovl5 (ENSDORG00000014395) #8	Gcm1 (ENSDORG00000003627) #9	Fbxo9 (ENSDORG00000003625) #10	Cilk1 (ENSDORG00000003623) #11	Gsta4 (ENSDORG00000029976)	ENSDORG00000029294	ENSDORG00000014473	ENSDORG00000012421 #17	Tram2 (ENSDORG00000006868) #18	Efhc1 (ENSDORG00000006864) #20	Mcm3 (ENSDORG00000006138) #22	Il17f (ENSDORG00000006136) #23	Il17a (ENSDORG00000008932) #25	Pkhd1 (ENSDORG00000002272) #26	Tfap2b (ENSDORG00000025666) #28	Tfap2d (ENSDORG00000003703) #29	ENSDORG00000028707	ENSDORG00000011420 #35	ENSDORG00000011413 #36	Rhag (ENSDORG00000024892) #37	Glyatl3 (ENSDORG00000006589)	Mmut (ENSDORG00000002052)	Ptchd4 (ENSDORG00000014666)	Opn5 (ENSDORG00000007833)	Adgrf2 (ENSDORG00000007827)	Cd2ap (ENSDORG00000007826)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Marmotini	ANCESTRAL SPECIES	18	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000163367.c.b #15	ENSGT00940000163367.c.a #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738
Alpin marmot	MODERN SPECIES	20	GCLC (ENSMMMG00000000505)	ELOVL5 (ENSMMMG00000000490) #8	ENSMMMG00000000473 #9	ENSMMMG00000000458	ENSMMMG00000000398 #10	CILK1 (ENSMMMG00000000307) #11	GSTA4 (ENSMMMG00000000272) #12	ENSMMMG00000000204	ENSMMMG00000000189 #15	ENSMMMG00000000069 #15	TMEM14A (ENSMMMG00000000009) #17	TRAM2 (ENSMMMG00000024638) #18	EFHC1 (ENSMMMG00000024637) #20	PAQR8 (ENSMMMG00000024636) #21	ENSMMMG00000024635	MCM3 (ENSMMMG00000024634) #22	IL17F (ENSMMMG00000024633) #23	IL17A (ENSMMMG00000024632) #25	PKHD1 (ENSMMMG00000024629) #26	TFAP2B (ENSMMMG00000024628) #28	ENSMMMG00000024624	DEFB114 (ENSMMMG00000024623) #32	CRISP1 (ENSMMMG00000024622) #33	ENSMMMG00000024621 #34	ENSMMMG00000024620 #34	CRISP3 (ENSMMMG00000024619) #35	CRISP2 (ENSMMMG00000024618) #36	ENSMMMG00000024617	RHAG (ENSMMMG00000024616) #37	ENSMMMG00000024615	ENSMMMG00000024614
Marmotini_b	ANCESTRAL SPECIES	8	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.i.a	ENSGT00940000163367.c.b #15	ENSGT00940000163367.c.a #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00940000162362 #33	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00390000007738	ENSGT00950000183133.f	ENSGT00390000005599
Arctic ground squirrel	MODERN SPECIES	237								ENSUPAG00010018634 #15	ENSUPAG00010018624 #15	ENSUPAG00010018562	TMEM14A (ENSUPAG00010018549) #17	ENSUPAG00010018545	TRAM2 (ENSUPAG00010018531) #18	EFHC1 (ENSUPAG00010018516) #20	PAQR8 (ENSUPAG00010018506) #21	MCM3 (ENSUPAG00010018473) #22	IL17F (ENSUPAG00010018464) #23	IL17A (ENSUPAG00010018457) #25	PKHD1 (ENSUPAG00010018346) #26	TFAP2B (ENSUPAG00010018310) #28	TFAP2D (ENSUPAG00010018299) #29	ENSUPAG00010018290	CRISP1 (ENSUPAG00010018274) #33
Squirrel	MODERN SPECIES	76	GCLC (ENSSTOG00000000903)	ENSSTOG00000015170 #8	ENSSTOG00000014763 #9	FBXO9 (ENSSTOG00000002185) #10	CILK1 (ENSSTOG00000012510) #11	GSTA4 (ENSSTOG00000012502) #12	ENSSTOG00000019919	ENSSTOG00000003609	ENSSTOG00000020625 #15	ENSSTOG00000028252 #15	ENSSTOG00000028449 #15	TMEM14A (ENSSTOG00000034800) #17	TRAM2 (ENSSTOG00000013535) #18	EFHC1 (ENSSTOG00000012272) #20	PAQR8 (ENSSTOG00000013049) #21	MCM3 (ENSSTOG00000001358) #22	IL17F (ENSSTOG00000002268) #23	IL17A (ENSSTOG00000008569) #25	PKHD1 (ENSSTOG00000013374) #26	TFAP2B (ENSSTOG00000025602) #28	TFAP2D (ENSSTOG00000011817) #29	DEFB110 (ENSSTOG00000033113) #31	CRISP1 (ENSSTOG00000025570) #33	CRISP3 (ENSSTOG00000033453) #35	CRISP2 (ENSSTOG00000013131) #36	RHAG (ENSSTOG00000001434) #37	ENSSTOG00000020139	ENSSTOG00000001431	GLYATL3 (ENSSTOG00000001428)	CENPQ (ENSSTOG00000001426)	MMUT (ENSSTOG00000001420)
Eurasian red squirrel	MODERN SPECIES	16	ELOVL5 (ENSSVLG00005008217) #8	GCM1 (ENSSVLG00005008319) #9	FBXO9 (ENSSVLG00005008390) #10	CILK1 (ENSSVLG00005008509) #11	GSTA4 (ENSSVLG00005008538) #12	ENSSVLG00005008575	GSTA3 (ENSSVLG00005008617) #13	ENSSVLG00005008692	TMEM14A (ENSSVLG00005008760) #17	ENSSVLG00005008800 #15	ENSSVLG00005008845 #15	ENSSVLG00005008875	TRAM2 (ENSSVLG00005008921) #18	EFHC1 (ENSSVLG00005008978) #20	ENSSVLG00005009141	MCM3 (ENSSVLG00005009178) #22	IL17F (ENSSVLG00005009322) #23	IL17A (ENSSVLG00005009355) #25	PKHD1 (ENSSVLG00005009423) #26	ENSSVLG00005010145	TFAP2B (ENSSVLG00005010190) #28	TFAP2D (ENSSVLG00005010245) #29	DEFB110 (ENSSVLG00005010300) #31	DEFB113 (ENSSVLG00005010331)	ENSSVLG00005010409	CRISP1 (ENSSVLG00005010451) #33	ENSSVLG00005010557 #34	ENSSVLG00005010570 #34	CRISP3 (ENSSVLG00005010598) #35	ENSSVLG00005010778 #34	CRISP2 (ENSSVLG00005010832) #36
Hystricomorpha	ANCESTRAL SPECIES	41										ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000004341	ENSHGLG00000034564	ACAT2 (ENSHGLG00000006902)	ENSHGLG00000033037	WTAP (ENSHGLG00000007879)	ENSHGLG00000016518	ENSHGLG00000048454	ENSHGLG00000007131	ENSHGLG00000043320	GSTA3 (ENSHGLG00000041079)	ENSHGLG00000035426 #17	ENSHGLG00000047464	ENSHGLG00000009261 #18	EFHC1 (ENSHGLG00000009785) #20	PAQR8 (ENSHGLG00000010601) #21	MCM3 (ENSHGLG00000016531) #22	IL17F (ENSHGLG00000017633) #23	IL17A (ENSHGLG00000014659) #25	ENSHGLG00000021226	PKHD1 (ENSHGLG00000018109) #26	ENSHGLG00000005244	TFAP2B (ENSHGLG00000008303) #28	TFAP2D (ENSHGLG00000003984) #29	ENSHGLG00000032464	ENSHGLG00000020379	DEFB110 (ENSHGLG00000004350) #31	ENSHGLG00000032826	CRISP3 (ENSHGLG00000043304) #35	ENSHGLG00000002662 #34	ENSHGLG00000002573	ENSHGLG00000002312 #37
Hystricomorpha_a	ANCESTRAL SPECIES	46										ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	41	ENSGT00940000159781	ENSGT00390000001024	ENSGT00940000160069	ENSGT00940000155172	ENSGT00390000018879	ENSGT00390000012017	ENSGT00940000157846	ENSGT00390000018436.a.b	ENSGT00950000183181.A.a	ENSGT00940000154526.h.i.a.q	ENSGT00940000154526.h.i.a.r	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00390000011892	ENSGT00940000156533.b	ENSGT00940000157191	ENSGT00940000156277	ENSGT00940000154868.a.a	ENSGT00390000003986	ENSGT00390000016421.b.b
Degu	DUPLICATION
Degu	MODERN SPECIES	63	ENSODEG00000019779	ERMARD (ENSODEG00000010972)	DYNLT2 (ENSODEG00000009837)	PHF10 (ENSODEG00000009105)	C6orf120 (ENSODEG00000019614)	ENSODEG00000009298	ENSODEG00000010394	THBS2 (ENSODEG00000009890)	SMOC2 (ENSODEG00000008584)	DACT2 (ENSODEG00000009034)	ENSODEG00000009677	TMEM14A (ENSODEG00000009025) #17	TRAM2 (ENSODEG00000008597) #18	EFHC1 (ENSODEG00000010266) #20	PAQR8 (ENSODEG00000008711) #21	ENSODEG00000009125 #22	IL17F (ENSODEG00000010370) #23	IL17A (ENSODEG00000010713) #25	PKHD1 (ENSODEG00000011040) #26	TFAP2B (ENSODEG00000010145) #28	ENSODEG00000009809	TFAP2D (ENSODEG00000009777) #29	CRISP2 (ENSODEG00000009452) #36	RHAG (ENSODEG00000010420) #37	MMUT (ENSODEG00000008529)	ENSODEG00000019538	BCKDHB (ENSODEG00000010271)	TENT5A (ENSODEG00000008776)	IBTK (ENSODEG00000010597)	TPBG (ENSODEG00000009537)	ENSODEG00000009092
Degu	MODERN SPECIES	139	SPNS2 (ENSODEG00000016391)	MYBBP1A (ENSODEG00000016740)	GGT6 (ENSODEG00000016629)	SMTNL2 (ENSODEG00000016870)	TEKT1 (ENSODEG00000016783)	FBXO39 (ENSODEG00000016674)	SLC13A5 (ENSODEG00000016589)	ENSODEG00000017372	ENSODEG00000016487	ENSODEG00000017470	PITPNM3 (ENSODEG00000016603)	ENSODEG00000016504	AIPL1 (ENSODEG00000016462)	WSCD1 (ENSODEG00000016638)	ENSODEG00000016653	ENSODEG00000017106 #22	ENSODEG00000017048	ENSODEG00000017171	ENSODEG00000020440	DERL2 (ENSODEG00000017040)	DHX33 (ENSODEG00000017026)	ENSODEG00000016744	RPAIN (ENSODEG00000016860)	NUP88 (ENSODEG00000017074)	RABEP1 (ENSODEG00000017178)	SCIMP (ENSODEG00000017150)	ZNF232 (ENSODEG00000016845)	ZFP3 (ENSODEG00000020398)	ENSODEG00000016994	KIF1C (ENSODEG00000017049)	INCA1 (ENSODEG00000017076)
Long-tailed chinchilla	MODERN SPECIES	118	ERMARD (ENSCLAG00000010666)	ENSCLAG00000011269	PHF10 (ENSCLAG00000012283)	C6orf120 (ENSCLAG00000013630)	WDR27 (ENSCLAG00000008515)	THBS2 (ENSCLAG00000015165)	SMOC2 (ENSCLAG00000014318)	ENSCLAG00000015281	ENSCLAG00000015569	ENSCLAG00000011232	ENSCLAG00000011460	TMEM14A (ENSCLAG00000012364) #17	TRAM2 (ENSCLAG00000012768) #18	EFHC1 (ENSCLAG00000017038) #20	PAQR8 (ENSCLAG00000017940) #21	MCM3 (ENSCLAG00000015905) #22	IL17F (ENSCLAG00000011803) #23	IL17A (ENSCLAG00000012310) #25	PKHD1 (ENSCLAG00000010173) #26	TFAP2B (ENSCLAG00000008266) #28	TFAP2D (ENSCLAG00000012034) #29	DEFB110 (ENSCLAG00000011894) #31	DEFB113 (ENSCLAG00000010106)	CRISP3 (ENSCLAG00000010600) #35	CRISP2 (ENSCLAG00000009665) #36	RHAG (ENSCLAG00000009257) #37	MMUT (ENSCLAG00000011186)	BCKDHB (ENSCLAG00000013713)	TENT5A (ENSCLAG00000013935)	IBTK (ENSCLAG00000008463)	UBE3D (ENSCLAG00000010406)
Guinea pig	MODERN SPECIES	12											ENSCPOG00000004186	TMEM14A (ENSCPOG00000009279) #17	TRAM2 (ENSCPOG00000034245) #18	EFHC1 (ENSCPOG00000001955) #20	PAQR8 (ENSCPOG00000039705) #21	MCM3 (ENSCPOG00000000867) #22	IL17F (ENSCPOG00000012646) #23	IL17A (ENSCPOG00000035708) #25	PKHD1 (ENSCPOG00000010473) #26	TFAP2B (ENSCPOG00000022967) #28	TFAP2D (ENSCPOG00000026397) #29	DEFB110 (ENSCPOG00000004557) #31	DEFB113 (ENSCPOG00000026683)	CRISP2 (ENSCPOG00000011111) #36	RHAG (ENSCPOG00000014678) #37	MMUT (ENSCPOG00000014677)	BCKDHB (ENSCPOG00000010332)	TENT5A (ENSCPOG00000033104)	IBTK (ENSCPOG00000010950)	TPBG (ENSCPOG00000002388)	UBE3D (ENSCPOG00000012708)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Eulipotyphla	ANCESTRAL SPECIES	686																ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25
Common shrew	MODERN SPECIES	936																MCM3 (ENSSARG00000013765) #22
Hedgehog	MODERN SPECIES	8898															ENSEEUG00000005180	MCM3 (ENSEEUG00000005026) #22	IL17F (ENSEEUG00000004993) #23
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Artiodactyla	ANCESTRAL SPECIES	15	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Suina	ANCESTRAL SPECIES	17				ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.r	ENSGT00940000154526.h.q.a	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
Pig	MODERN SPECIES	15	ENSSSCG00000047070	ELOVL5 (ENSSSCG00000024149) #8	GCM1 (ENSSSCG00000032538) #9	FBXO9 (ENSSSCG00000002629) #10	CILK1 (ENSSSCG00000002628) #11	GSTA4 (ENSSSCG00000002627) #12	ENSSSCG00000023467	ENSSSCG00000058308	ENSSSCG00000002623	GSTA1 (ENSSSCG00000052947)	TMEM14A (ENSSSCG00000002622) #17	ENSSSCG00000058149	TRAM2 (ENSSSCG00000038401) #18	EFHC1 (ENSSSCG00000002620) #20	PAQR8 (ENSSSCG00000001750) #21	MCM3 (ENSSSCG00000025488) #22	IL17F (ENSSSCG00000054125) #23	IL17A (ENSSSCG00000001748) #25	ENSSSCG00000039768	PKHD1 (ENSSSCG00000001746) #26	ENSSSCG00000056595	TFAP2B (ENSSSCG00000025535) #28	TFAP2D (ENSSSCG00000001744) #29	ENSSSCG00000036460 #30	DEFB110 (ENSSSCG00000001743) #31	DEFB113 (ENSSSCG00000034490)	DEFB114 (ENSSSCG00000001741) #32	ENSSSCG00000031069	CRISP1 (ENSSSCG00000001739) #33	PGK2 (ENSSSCG00000001738) #34	CRISP3 (ENSSSCG00000024347) #35
Chacoan peccary	MODERN SPECIES	781	LONRF1 (ENSCWAG00000018362)	PRAG1 (ENSCWAG00000018444)	CLDN23 (ENSCWAG00000018482)	ELOVL5 (ENSCWAG00000018497) #8	GCM1 (ENSCWAG00000018558) #9	FBXO9 (ENSCWAG00000018597) #10	CILK1 (ENSCWAG00000018689) #11	GSTA4 (ENSCWAG00000018735) #12	ENSCWAG00000018798	ENSCWAG00000018859	ENSCWAG00000018876	TMEM14A (ENSCWAG00000018901) #17	TRAM2 (ENSCWAG00000018920) #18	EFHC1 (ENSCWAG00000018950) #20	PAQR8 (ENSCWAG00000019013) #21	MCM3 (ENSCWAG00000019032) #22	IL17F (ENSCWAG00000019202) #23	IL17A (ENSCWAG00000007969) #25	PKHD1 (ENSCWAG00000008121) #26	ENSCWAG00000009248	TFAP2B (ENSCWAG00000009267) #28	TFAP2D (ENSCWAG00000009359) #29	ENSCWAG00000009466	ENSCWAG00000009493	DEFB114 (ENSCWAG00000009520) #32	ENSCWAG00000009550	CRISP1 (ENSCWAG00000009604) #33	PGK2 (ENSCWAG00000009751) #34	CRISP3 (ENSCWAG00000009771) #35	CRISP2 (ENSCWAG00000009872) #36	RHAG (ENSCWAG00000009972) #37
Artiodactyla_a	ANCESTRAL SPECIES	19	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Artiodactyla_b	ANCESTRAL SPECIES	15	ENSGT00940000160997	ENSGT00940000155371.m.a.b.a	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000158206.p #17	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Cetacea	ANCESTRAL SPECIES	7	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000156439 #36
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00940000160997	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT01000000219458
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000160997	ENSGT00940000155371.m.a.a	ENSGT00940000154993	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000154993.f	ENSGT00940000155371.m.a.a	ENSGT00940000154993.e	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000154993.f	ENSGT00940000155371.m.a.a	ENSGT00940000154993.e	ENSGT00940000161821.d	ENSGT00940000154723.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000154526.h	ENSGT00940000158206.o.a #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00390000008767.a.b	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT01000000219458	ENSGT00390000007738	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Narwhal	MODERN SPECIES	310	ENSMMNG00015015182	ENSMMNG00015015196	ENSMMNG00015015207	HLA-DQB1 (ENSMMNG00015015225)	ELOVL5 (ENSMMNG00015015252) #8	ENSMMNG00015015268	GCM1 (ENSMMNG00015015289) #9	FBXO9 (ENSMMNG00015015321) #10	CILK1 (ENSMMNG00015015375) #11	GSTA4 (ENSMMNG00015015395) #12	ENSMMNG00015015404	ENSMMNG00015015418 #17	TRAM2 (ENSMMNG00015015438) #18	EFHC1 (ENSMMNG00015015488) #20	PAQR8 (ENSMMNG00015015528) #21	MCM3 (ENSMMNG00015015544) #22	IL17F (ENSMMNG00015015583) #23	IL17A (ENSMMNG00015015597) #25	PKHD1 (ENSMMNG00015015772) #26	ENSMMNG00015016265	TFAP2B (ENSMMNG00015016361) #28	ENSMMNG00015016422	TFAP2D (ENSMMNG00015016446) #29	CRISP1 (ENSMMNG00015016511) #33	CRISP2 (ENSMMNG00015016586) #36	RHAG (ENSMMNG00015016693) #37	ENSMMNG00015016848	ENSMMNG00015016858	CENPQ (ENSMMNG00015016873)	MMUT (ENSMMNG00015016903)	ENSMMNG00015016931
Beluga whale	MODERN SPECIES	8	HLA-DRA (ENSDLEG00000002344)	ENSDLEG00000002322	ENSDLEG00000002285	ENSDLEG00000002263	HLA-DQB1 (ENSDLEG00000002245)	ELOVL5 (ENSDLEG00000002205) #8	GCM1 (ENSDLEG00000002174) #9	FBXO9 (ENSDLEG00000002148) #10	ICK (ENSDLEG00000002133) #11	GSTA4 (ENSDLEG00000002121) #12	ENSDLEG00000002101	TMEM14A (ENSDLEG00000002084) #17	TRAM2 (ENSDLEG00000002065) #18	EFHC1 (ENSDLEG00000002046) #20	PAQR8 (ENSDLEG00000002037) #21	MCM3 (ENSDLEG00000002008) #22	IL17A (ENSDLEG00000001992) #25	ENSDLEG00000001960	PKHD1 (ENSDLEG00000001491) #26	TFAP2B (ENSDLEG00000001419) #28	ENSDLEG00000001409	TFAP2D (ENSDLEG00000001397) #29	ENSDLEG00000001355 #33	CRISP2 (ENSDLEG00000001268) #36	RHAG (ENSDLEG00000001216) #37	ENSDLEG00000001190	CENPQ (ENSDLEG00000001158)	MUT (ENSDLEG00000001129)	PTCHD4 (ENSDLEG00000001112)	OPN5 (ENSDLEG00000001084)	CD2AP (ENSDLEG00000001041)
Vaquita	MODERN SPECIES	2	ENSPSNG00000014710	ENSPSNG00000014600	ENSPSNG00000014515	HLA-DQB1 (ENSPSNG00000014402)	ENSPSNG00000014305	ELOVL5 (ENSPSNG00000014225) #8	GCM1 (ENSPSNG00000014108) #9	FBXO9 (ENSPSNG00000014029) #10	CILK1 (ENSPSNG00000013951) #11	GSTA4 (ENSPSNG00000013846) #12	ENSPSNG00000013816	ENSPSNG00000013758 #17	TRAM2 (ENSPSNG00000013712) #18	EFHC1 (ENSPSNG00000013416) #20	PAQR8 (ENSPSNG00000013353) #21	MCM3 (ENSPSNG00000013109) #22	IL17F (ENSPSNG00000013032) #23	IL17A (ENSPSNG00000012960) #25	PKHD1 (ENSPSNG00000011341) #26	TFAP2B (ENSPSNG00000011121) #28	TFAP2D (ENSPSNG00000010982) #29	ENSPSNG00000010938	CRISP1 (ENSPSNG00000010733) #33	CRISP2 (ENSPSNG00000010467) #36	RHAG (ENSPSNG00000010096) #37	ENSPSNG00000009943	CENPQ (ENSPSNG00000009856)	MMUT (ENSPSNG00000009697)	ENSPSNG00000009630	PTCHD4 (ENSPSNG00000009578)	OPN5 (ENSPSNG00000009417)
Dolphin	MODERN SPECIES	3446																MCM3 (ENSTTRG00000003714) #22	ENSTTRG00000003712 #23
Sperm whale	MODERN SPECIES	9	BTNL2 (ENSPCTG00005005240)	HLA-DRA (ENSPCTG00005005185)	ENSPCTG00005005163	FBXO9 (ENSPCTG00005004996) #10	GCM1 (ENSPCTG00005004942) #9	ELOVL5 (ENSPCTG00005004916) #8	ENSPCTG00005004880	ENSPCTG00005004822	CILK1 (ENSPCTG00005004767) #11	GSTA4 (ENSPCTG00005004750) #12	ENSPCTG00005004724	TMEM14A (ENSPCTG00005004702) #17	TRAM2 (ENSPCTG00005004651) #18	EFHC1 (ENSPCTG00005004508) #20	PAQR8 (ENSPCTG00005004467) #21	MCM3 (ENSPCTG00005004374) #22	IL17F (ENSPCTG00005004341) #23	IL17A (ENSPCTG00005004302) #25	ENSPCTG00005011885	PKHD1 (ENSPCTG00005010720) #26	TFAP2B (ENSPCTG00005010627) #28	TFAP2D (ENSPCTG00005010496) #29	ENSPCTG00005010431 #30	ENSPCTG00005010390	ENSPCTG00005010352	DEFB114 (ENSPCTG00005010314) #32	DEFB133 (ENSPCTG00005010282)	CRISP1 (ENSPCTG00005010113) #33	CRISP2 (ENSPCTG00005010038) #36	RHAG (ENSPCTG00005009633) #37	ENSPCTG00005009572
Blue whale	MODERN SPECIES	2	ENSBMSG00010014110	ENSBMSG00010015021	ENSBMSG00010015089	ELOVL5 (ENSBMSG00010015116) #8	GCM1 (ENSBMSG00010015146) #9	FBXO9 (ENSBMSG00010015186) #10	CILK1 (ENSBMSG00010015250) #11	GSTA4 (ENSBMSG00010015291) #12	ENSBMSG00010015322	ENSBMSG00010015367	ENSBMSG00010015390	TMEM14A (ENSBMSG00010015410) #17	TRAM2 (ENSBMSG00010015431) #18	EFHC1 (ENSBMSG00010015480) #20	PAQR8 (ENSBMSG00010015634) #21	MCM3 (ENSBMSG00010015679) #22	IL17F (ENSBMSG00010015799) #23	IL17A (ENSBMSG00010015822) #25	PKHD1 (ENSBMSG00010015888) #26	ENSBMSG00010016025	TFAP2B (ENSBMSG00010016047) #28	ENSBMSG00010016081	TFAP2D (ENSBMSG00010016123) #29	ENSBMSG00010016161	ENSBMSG00010016185	DEFB114 (ENSBMSG00010016205) #32	ENSBMSG00010016221	ENSBMSG00010016251	CRISP1 (ENSBMSG00010016283) #33	PGK2 (ENSBMSG00010016360) #34	CRISP2 (ENSBMSG00010016371) #36
Pecora	ANCESTRAL SPECIES	21	ENSGT00940000160997	ENSGT00940000155371.n	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000164319 #13	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Yarkand deer	MODERN SPECIES	30	ENSCHYG00000001781	ENSCHYG00000001738	ENSCHYG00000001614	ELOVL5 (ENSCHYG00000001467) #8	GCM1 (ENSCHYG00000001431) #9	FBXO9 (ENSCHYG00000001319) #10	CILK1 (ENSCHYG00000001256) #11	GSTA4 (ENSCHYG00000001213) #12	ENSCHYG00000001165	ENSCHYG00000001040	TMEM14A (ENSCHYG00000000971) #17	ENSCHYG00000000961	TRAM2 (ENSCHYG00000000901) #18	EFHC1 (ENSCHYG00000000722) #20	PAQR8 (ENSCHYG00000000660) #21	MCM3 (ENSCHYG00000000583) #22	IL17F (ENSCHYG00000000554) #23	IL17A (ENSCHYG00000000544) #25	PKHD1 (ENSCHYG00000000348) #26	TFAP2B (ENSCHYG00000000256) #28	TFAP2D (ENSCHYG00000000212) #29	ENSCHYG00000000206	ENSCHYG00000000193 #30	ENSCHYG00000000185	ENSCHYG00000004622	DEFB114 (ENSCHYG00000004611) #32	ENSCHYG00000004600	CRISP1 (ENSCHYG00000004574) #33	PGK2 (ENSCHYG00000004559) #34	CRISP3 (ENSCHYG00000004545) #35	CRISP2 (ENSCHYG00000004535) #36
Percora_a	ANCESTRAL SPECIES	12	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.a	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000164319 #13	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Siberian musk deer	MODERN SPECIES	355	ENSMMSG00000007817	ENSMMSG00000007750	ENSMMSG00000007625	ELOVL5 (ENSMMSG00000007510) #8	GCM1 (ENSMMSG00000007462) #9	FBXO9 (ENSMMSG00000007357) #10	CILK1 (ENSMMSG00000007320) #11	GSTA4 (ENSMMSG00000007272) #12	ENSMMSG00000007230	GSTA3 (ENSMMSG00000007165) #13	ENSMMSG00000007076	TMEM14A (ENSMMSG00000007019) #17	TRAM2 (ENSMMSG00000012917) #18	EFHC1 (ENSMMSG00000012624) #20	PAQR8 (ENSMMSG00000012597) #21	MCM3 (ENSMMSG00000012469) #22	IL17F (ENSMMSG00000012453) #23	IL17A (ENSMMSG00000012428) #25	ENSMMSG00000012401	PKHD1 (ENSMMSG00000011131) #26	TFAP2B (ENSMMSG00000010960) #28	TFAP2D (ENSMMSG00000010911) #29	ENSMMSG00000010891	ENSMMSG00000010864	DEFB114 (ENSMMSG00000010840) #32	ENSMMSG00000010809	CRISP1 (ENSMMSG00000010711) #33	PGK2 (ENSMMSG00000010682) #34	CRISP3 (ENSMMSG00000010609) #35	CRISP2 (ENSMMSG00000010560) #36	RHAG (ENSMMSG00000010283) #37
Bovidae	ANCESTRAL SPECIES	13	ENSGT00940000154723.b.mb.a.a	ENSGT00940000161821.d.e.a	ENSGT00940000154723.b.mb.a.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Caprinae	ANCESTRAL SPECIES	16	ENSGT00940000161821.d.e.a	ENSGT00940000154723.b.mb.a.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.b.b.b	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Goat	MODERN SPECIES	15	ENSCHIG00000016214	ELOVL5 (ENSCHIG00000012953) #8	GCM1 (ENSCHIG00000017917) #9	FBXO9 (ENSCHIG00000018667) #10	CILK1 (ENSCHIG00000010890) #11	GSTA4 (ENSCHIG00000016853) #12	ENSCHIG00000008471	ENSCHIG00000006022	ENSCHIG00000026143	ENSCHIG00000013282	ENSCHIG00000008585	TMEM14A (ENSCHIG00000018513) #17	TRAM2 (ENSCHIG00000014597) #18	EFHC1 (ENSCHIG00000014186) #20	PAQR8 (ENSCHIG00000004272) #21	MCM3 (ENSCHIG00000020423) #22	ENSCHIG00000008358 #23	IL17A (ENSCHIG00000022239) #25	PKHD1 (ENSCHIG00000021972) #26	TFAP2B (ENSCHIG00000007665) #28	TFAP2D (ENSCHIG00000023280) #29	ENSCHIG00000008615 #30	DEFB110 (ENSCHIG00000017625) #31	DEFB114 (ENSCHIG00000020648) #32	CRISP1 (ENSCHIG00000015225) #33	ENSCHIG00000010083	ENSCHIG00000004238	PGK2 (ENSCHIG00000003650) #34	CRISP3 (ENSCHIG00000012989) #35	CRISP2 (ENSCHIG00000009328) #36	RHAG (ENSCHIG00000019103) #37
Rambouillet Sheep	MODERN SPECIES	12	ENSOARG00020021487	ELOVL5 (ENSOARG00020021349) #8	GCM1 (ENSOARG00020021293) #9	FBXO9 (ENSOARG00020021181) #10	CILK1 (ENSOARG00020021095) #11	GSTA4 (ENSOARG00020021007) #12	ENSOARG00020020938	ENSOARG00020020898	ENSOARG00020020785	ENSOARG00020020565	TMEM14A (ENSOARG00020020512) #17	TRAM2 (ENSOARG00020020430) #18	ENSOARG00020020412	EFHC1 (ENSOARG00020020221) #20	PAQR8 (ENSOARG00020020203) #21	MCM3 (ENSOARG00020019991) #22	ENSOARG00020019944 #23	IL17A (ENSOARG00020019903) #25	PKHD1 (ENSOARG00020016458) #26	TFAP2B (ENSOARG00020016055) #28	TFAP2D (ENSOARG00020015981) #29	ENSOARG00020015930 #30	ENSOARG00020015886	ENSOARG00020015856	DEFB114 (ENSOARG00020015818) #32	ENSOARG00020015759	CRISP1 (ENSOARG00020015573) #33	PGK2 (ENSOARG00020015502) #34	CRISP3 (ENSOARG00020015128) #35	RHAG (ENSOARG00020014891) #37	ENSOARG00020014845
Bovinae	ANCESTRAL SPECIES	9	ENSGT00940000161821.d.e.b.a	ENSGT00940000154723.b.nb.c.a	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
American bison	MODERN SPECIES	3345									ENSBBBG00000005545	ENSBBBG00000020535	TMEM14A (ENSBBBG00000005538) #17	TRAM2 (ENSBBBG00000020513) #18	EFHC1 (ENSBBBG00000020498) #20	PAQR8 (ENSBBBG00000000596) #21	ENSBBBG00000000602	MCM3 (ENSBBBG00000000609) #22	IL17F (ENSBBBG00000000666) #23	ENSBBBG00000000676	IL17A (ENSBBBG00000000680) #25	ENSBBBG00000000695	PKHD1 (ENSBBBG00000020399) #26	TFAP2B (ENSBBBG00000020023) #28	TFAP2D (ENSBBBG00000020011) #29	ENSBBBG00000020004	ENSBBBG00000020001	DEFB114 (ENSBBBG00000005405) #32	ENSBBBG00000019989	CRISP1 (ENSBBBG00000005404) #33	PGK2 (ENSBBBG00000005127) #34	CRISP3 (ENSBBBG00000019958) #35	CRISP2 (ENSBBBG00000019922) #36
Bos	ANCESTRAL SPECIES	17	ENSGT00940000154723.b.mb.a.a.a	ENSGT00940000161821.c.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Bos_b	ANCESTRAL SPECIES	8	ENSGT00940000154723.b.mb.a.a.a	ENSGT00940000161821.c.b	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.n	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT01090000261241	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Cow	MODERN SPECIES	15	ELOVL5 (ENSBTAG00000003359) #8	GCM1 (ENSBTAG00000008148) #9	FBXO9 (ENSBTAG00000015083) #10	CILK1 (ENSBTAG00000015590) #11	GSTA4 (ENSBTAG00000004288) #12	GSTA3 (ENSBTAG00000032642)	GSTA5 (ENSBTAG00000037949)	GSTA1 (ENSBTAG00000021516)	ENSBTAG00000025485	GSTA2 (ENSBTAG00000006546)	TMEM14A (ENSBTAG00000005206) #17	ENSBTAG00000055192	TRAM2 (ENSBTAG00000009112) #18	EFHC1 (ENSBTAG00000017810) #20	PAQR8 (ENSBTAG00000025494) #21	MCM3 (ENSBTAG00000010721) #22	IL17F (ENSBTAG00000016835) #23	IL17A (ENSBTAG00000002150) #25	PKHD1 (ENSBTAG00000011237) #26	ENSBTAG00000053324	TFAP2B (ENSBTAG00000020426) #28	TFAP2D (ENSBTAG00000020425) #29	ENSBTAG00000046711 #30	DEFB110 (ENSBTAG00000051453) #31	DEFB113 (ENSBTAG00000054396)	DEFB114 (ENSBTAG00000054219) #32	CRISP1 (ENSBTAG00000008085) #33	ENSBTAG00000053808	CRISP3 (ENSBTAG00000012918) #35	CRISP2 (ENSBTAG00000002166) #36	RHAG (ENSBTAG00000011300) #37
Hybrid Bos Indicus	MODERN SPECIES	15	ENSBIXG00005004075	ENSBIXG00005023918	ENSBIXG00005024073	ELOVL5 (ENSBIXG00005024171) #8	GCM1 (ENSBIXG00005024212) #9	FBXO9 (ENSBIXG00005024313) #10	CILK1 (ENSBIXG00005024517) #11	ENSBIXG00005024575	ENSBIXG00005024698	TMEM14A (ENSBIXG00005024760) #17	ENSBIXG00005024796	TRAM2 (ENSBIXG00005024830) #18	EFHC1 (ENSBIXG00005024957) #20	ENSBIXG00005024978	PAQR8 (ENSBIXG00005025001) #21	MCM3 (ENSBIXG00005025134) #22	IL17F (ENSBIXG00005007088) #23	IL17A (ENSBIXG00005025184) #25	ENSBIXG00005025213	PKHD1 (ENSBIXG00005026553) #26	TFAP2B (ENSBIXG00005026756) #28	TFAP2D (ENSBIXG00005026782) #29	ENSBIXG00005026805 #30	ENSBIXG00005006615	ENSBIXG00005026837	DEFB114 (ENSBIXG00005026856) #32	ENSBIXG00005026869	CRISP1 (ENSBIXG00005004613) #33	PGK2 (ENSBIXG00005026974) #34	CRISP3 (ENSBIXG00005027026) #35	CRISP2 (ENSBIXG00005004644) #36
Bos_a	ANCESTRAL SPECIES	11	ENSGT00940000155371.m.a.a	ENSGT00940000161821.d.e.b.a	ENSGT00940000154723.b.mb.a.a.a	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000154526.h.m.b.a	ENSGT00940000154526.h.m.a	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT00390000003710.c.a.b.a.b	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00970000198301	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00900000143290	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Wild yak	MODERN SPECIES	853											TMEM14A (ENSBMUG00000021104) #17	TRAM2 (ENSBMUG00000021123) #18	EFHC1 (ENSBMUG00000021212) #20	PAQR8 (ENSBMUG00000021229) #21	ENSBMUG00000021239	MCM3 (ENSBMUG00000021258) #22	IL17F (ENSBMUG00000021272) #23	IL17A (ENSBMUG00000021282) #25	ENSBMUG00000021309
Domestic yak	MODERN SPECIES	16	ENSBGRG00000019125	ENSBGRG00000019169	HLA-DQB1 (ENSBGRG00000019265)	ELOVL5 (ENSBGRG00000019509) #8	GCM1 (ENSBGRG00000019628) #9	FBXO9 (ENSBGRG00000019692) #10	CILK1 (ENSBGRG00000019840) #11	GSTA4 (ENSBGRG00000019949) #12	ENSBGRG00000020093	TMEM14A (ENSBGRG00000020421) #17	TRAM2 (ENSBGRG00000020480) #18	EFHC1 (ENSBGRG00000020698) #20	ENSBGRG00000020825	PAQR8 (ENSBGRG00000020850) #21	ENSBGRG00000020869	MCM3 (ENSBGRG00000020908) #22	ENSBGRG00000021331 #23	ENSBGRG00000021362 #25	PKHD1 (ENSBGRG00000021566) #26	ENSBGRG00000023198	TFAP2B (ENSBGRG00000023229) #28	TFAP2D (ENSBGRG00000023390) #29	ENSBGRG00000023509 #30	ENSBGRG00000023539	ENSBGRG00000023558	DEFB114 (ENSBGRG00000023574) #32	ENSBGRG00000023617	CRISP1 (ENSBGRG00000023658) #33	PGK2 (ENSBGRG00000023754) #34	CRISP3 (ENSBGRG00000023771) #35	ENSBGRG00000023897
Camelidae	ANCESTRAL SPECIES	13	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206.p #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Arabian camel	MODERN SPECIES	12	KLHL31 (ENSCDRG00005013321)	GCLC (ENSCDRG00005012966)	ELOVL5 (ENSCDRG00005012827) #8	GCM1 (ENSCDRG00005012750) #9	FBXO9 (ENSCDRG00005012262) #10	CILK1 (ENSCDRG00005012148) #11	GSTA4 (ENSCDRG00005012092) #12	ENSCDRG00005012038	ENSCDRG00005011762	ENSCDRG00005011698	ENSCDRG00005011642 #17	TRAM2 (ENSCDRG00005011552) #18	EFHC1 (ENSCDRG00005011151) #20	PAQR8 (ENSCDRG00005011116) #21	ENSCDRG00005011086	MCM3 (ENSCDRG00005010811) #22	IL17F (ENSCDRG00005010775) #23	IL17A (ENSCDRG00005010750) #25	PKHD1 (ENSCDRG00005009579) #26	TFAP2B (ENSCDRG00005009426) #28	TFAP2D (ENSCDRG00005009248) #29	ENSCDRG00005009210	ENSCDRG00005009165	DEFB114 (ENSCDRG00005009130) #32	ENSCDRG00005009079	CRISP1 (ENSCDRG00005008884) #33	PGK2 (ENSCDRG00005008847) #34	ENSCDRG00005019362	CRISP3 (ENSCDRG00005019335) #35	CRISP2 (ENSCDRG00005019315) #36	RHAG (ENSCDRG00005018599) #37
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000164319 #13	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00940000167568	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Greater horseshoe bat	MODERN SPECIES	21	MLIP (ENSRFEG00010012806)	LRRC1 (ENSRFEG00010012721)	KLHL31 (ENSRFEG00010012687)	GCLC (ENSRFEG00010011982)	ELOVL5 (ENSRFEG00010011860) #8	GCM1 (ENSRFEG00010011767) #9	FBXO9 (ENSRFEG00010011690) #10	CILK1 (ENSRFEG00010011638) #11	GSTA4 (ENSRFEG00010011544) #12	ENSRFEG00010011511	ENSRFEG00010011486	TMEM14A (ENSRFEG00010011433) #17	TRAM2 (ENSRFEG00010011364) #18	EFHC1 (ENSRFEG00010011237) #20	PAQR8 (ENSRFEG00010011220) #21	MCM3 (ENSRFEG00010010927) #22	IL17F (ENSRFEG00010010852) #23	IL17A (ENSRFEG00010010796) #25	PKHD1 (ENSRFEG00010009512) #26	ENSRFEG00010009444	TFAP2B (ENSRFEG00010009189) #28	TFAP2D (ENSRFEG00010009088) #29	ENSRFEG00010009052	DEFB113 (ENSRFEG00010009018)	DEFB114 (ENSRFEG00010008975) #32	ENSRFEG00010008951	CRISP1 (ENSRFEG00010008812) #33	PGK2 (ENSRFEG00010008789) #34	CRISP3 (ENSRFEG00010008695) #35	CRISP2 (ENSRFEG00010008622) #36	ENSRFEG00010008592
Microbat	MODERN SPECIES	1048	ENSMLUG00000011240	ELOVL5 (ENSMLUG00000015489) #8	GCM1 (ENSMLUG00000002762) #9	FBXO9 (ENSMLUG00000002752) #10	CILK1 (ENSMLUG00000002739) #11	GSTA4 (ENSMLUG00000002733) #12	ENSMLUG00000030329	ENSMLUG00000025719	ENSMLUG00000029046	ENSMLUG00000010177	TMEM14A (ENSMLUG00000030435) #17	ENSMLUG00000023726	TRAM2 (ENSMLUG00000013636) #18	EFHC1 (ENSMLUG00000013628) #20	PAQR8 (ENSMLUG00000001768) #21	MCM3 (ENSMLUG00000001752) #22	IL17F (ENSMLUG00000001744) #23	IL17A (ENSMLUG00000001736) #25	PKHD1 (ENSMLUG00000014592) #26	TFAP2B (ENSMLUG00000016209) #28	TFAP2D (ENSMLUG00000005054) #29	ENSMLUG00000015666 #30	ENSMLUG00000025685	DEFB110 (ENSMLUG00000006294) #31	DEFB113 (ENSMLUG00000025016)	DEFB114 (ENSMLUG00000011206) #32	CRISP1 (ENSMLUG00000017580) #33	CRISP3 (ENSMLUG00000002126) #35	ENSMLUG00000026053 #36	ENSMLUG00000010302 #36	RHAG (ENSMLUG00000012875) #37
Megabat	MODERN SPECIES	4032																MCM3 (ENSPVAG00000010177) #22	IL17F (ENSPVAG00000010176) #23	IL17A (ENSPVAG00000010174) #25
Equus	ANCESTRAL SPECIES	10	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.u.b	ENSGT00940000154526.h.u.a.a.a	ENSGT00940000154526.h.u.a.b.a.b	ENSGT00940000164319 #13	ENSGT00940000154526.h.v	ENSGT00940000158206 #17	ENSGT00940000165202.C.l	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182891.a.a.b.a.a.a.b.a.a	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Donkey	MODERN SPECIES	28	FBXO9 (ENSEASG00005019722) #10	CILK1 (ENSEASG00005019720) #11	GSTA4 (ENSEASG00005019714) #12	ENSEASG00005019712	ENSEASG00005027189	ENSEASG00005024056	ENSEASG00005030146	ENSEASG00005004299	ENSEASG00005024395	ENSEASG00005027355	ENSEASG00005028323 #17	ENSEASG00005033157	ENSEASG00005004245	TRAM2 (ENSEASG00005004236) #18	EFHC1 (ENSEASG00005004217) #20	MCM3 (ENSEASG00005004205) #22	IL17F (ENSEASG00005029310) #23	IL17A (ENSEASG00005004197) #25	PKHD1 (ENSEASG00005004167) #26	ENSEASG00005026197	ENSEASG00005004154	TFAP2B (ENSEASG00005004150) #28	TFAP2D (ENSEASG00005004143) #29	DEFB110 (ENSEASG00005028434) #31	DEFB113 (ENSEASG00005004132)	DEFB114 (ENSEASG00005025998) #32	CRISP1 (ENSEASG00005004126) #33	PGK2 (ENSEASG00005033787) #34	CRISP3 (ENSEASG00005004119) #35	CRISP2 (ENSEASG00005004114) #36	ENSEASG00005004108
Horse	MODERN SPECIES	12	ENSECAG00000053489	ENSECAG00000051447	GSTA3 (ENSECAG00000030691)	ENSECAG00000055342	ENSECAG00000059890	ENSECAG00000039093	ENSECAG00000033172 #13	ENSECAG00000046735	ENSECAG00000044907	ENSECAG00000052505	TMEM14A (ENSECAG00000015579) #17	ENSECAG00000030805	TRAM2 (ENSECAG00000010916) #18	EFHC1 (ENSECAG00000008434) #20	PAQR8 (ENSECAG00000005594) #21	MCM3 (ENSECAG00000020506) #22	ENSECAG00000031935 #23	IL17A (ENSECAG00000038266) #25	PKHD1 (ENSECAG00000022699) #26	ENSECAG00000046206	TFAP2B (ENSECAG00000015046) #28	TFAP2D (ENSECAG00000012285) #29	ENSECAG00000032228 #30	DEFB110 (ENSECAG00000058073) #31	DEFB113 (ENSECAG00000033376)	DEFB114 (ENSECAG00000040842) #32	CRISP1 (ENSECAG00000011049) #33	PGK2 (ENSECAG00000003389) #34	CRISP2 (ENSECAG00000006482) #36	ENSECAG00000019920	RHAG (ENSECAG00000012957) #37
Carnivora	ANCESTRAL SPECIES	4	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Caniformia	ANCESTRAL SPECIES	3	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT01040000243268	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Ursidae	ANCESTRAL SPECIES	35	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT01040000243268	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37
Ursus	ANCESTRAL SPECIES	28	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h.y.a	ENSGT00940000154526.h.y.b	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f
American black bear	MODERN SPECIES	4937																MCM3 (ENSUAMG00000019018) #22	IL17F (ENSUAMG00000019017) #23	IL17A (ENSUAMG00000019016) #25
Polar bear	MODERN SPECIES	174	KLHL31 (ENSUMAG00000004157)	GCLC (ENSUMAG00000004165)	ELOVL5 (ENSUMAG00000004173) #8	GCM1 (ENSUMAG00000004179) #9	FBXO9 (ENSUMAG00000004188) #10	CILK1 (ENSUMAG00000004198) #11	GSTA4 (ENSUMAG00000004218) #12	ENSUMAG00000004224	ENSUMAG00000004238	ENSUMAG00000004271	ENSUMAG00000004280	TMEM14A (ENSUMAG00000004281) #17	TRAM2 (ENSUMAG00000004285) #18	EFHC1 (ENSUMAG00000004342) #20	PAQR8 (ENSUMAG00000004353) #21	MCM3 (ENSUMAG00000004355) #22	IL17F (ENSUMAG00000004365) #23	IL17A (ENSUMAG00000004369) #25	PKHD1 (ENSUMAG00000004400) #26	TFAP2B (ENSUMAG00000004537) #28	TFAP2D (ENSUMAG00000004569) #29	DEFB110 (ENSUMAG00000004590) #31	DEFB113 (ENSUMAG00000004594)	DEFB114 (ENSUMAG00000004596) #32	CRISP1 (ENSUMAG00000004606) #33	PGK2 (ENSUMAG00000004614) #34	CRISP3 (ENSUMAG00000004620) #35	CRISP2 (ENSUMAG00000004625) #36	RHAG (ENSUMAG00000004639) #37	ENSUMAG00000004674	GLYATL3 (ENSUMAG00000004931)
Giant Panda	MODERN SPECIES	10	ENSAMEG00000029587	LRRC1 (ENSAMEG00000005818)	KLHL31 (ENSAMEG00000005814)	GCLC (ENSAMEG00000005766)	ELOVL5 (ENSAMEG00000005760) #8	GCM1 (ENSAMEG00000005755) #9	FBXO9 (ENSAMEG00000005714) #10	CILK1 (ENSAMEG00000005669) #11	GSTA4 (ENSAMEG00000005658) #12	ENSAMEG00000005598	ENSAMEG00000002320	TMEM14A (ENSAMEG00000002373) #17	TRAM2 (ENSAMEG00000008465) #18	EFHC1 (ENSAMEG00000008516) #20	PAQR8 (ENSAMEG00000019263) #21	MCM3 (ENSAMEG00000008540) #22	IL17F (ENSAMEG00000025810) #23	IL17A (ENSAMEG00000025948) #25	PKHD1 (ENSAMEG00000008599) #26	ENSAMEG00000029833	TFAP2B (ENSAMEG00000008680) #28	TFAP2D (ENSAMEG00000008744) #29	ENSAMEG00000028632	ENSAMEG00000008748 #30	ENSAMEG00000024830	DEFB113 (ENSAMEG00000008753)	DEFB114 (ENSAMEG00000008754) #32	ENSAMEG00000031410	CRISP1 (ENSAMEG00000030508) #33	PGK2 (ENSAMEG00000019293) #34	CRISP3 (ENSAMEG00000008761) #35
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778.d #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000163367 #15	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT01040000243268	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f.d
Ferret	MODERN SPECIES	328	MLIP (ENSMPUG00000008821)	LRRC1 (ENSMPUG00000008840)	KLHL31 (ENSMPUG00000008851)	GCLC (ENSMPUG00000008858)	ELOVL5 (ENSMPUG00000008865) #8	GCM1 (ENSMPUG00000008870) #9	FBXO9 (ENSMPUG00000008879) #10	CILK1 (ENSMPUG00000008895) #11	ENSMPUG00000008911 #12	ENSMPUG00000008918	ENSMPUG00000008923	ENSMPUG00000008935 #17	TRAM2 (ENSMPUG00000008954) #18	EFHC1 (ENSMPUG00000008966) #20	PAQR8 (ENSMPUG00000008975) #21	MCM3 (ENSMPUG00000008986) #22	ENSMPUG00000008998 #23	IL17A (ENSMPUG00000009002) #25	PKHD1 (ENSMPUG00000009027) #26	TFAP2B (ENSMPUG00000009084) #28	TFAP2D (ENSMPUG00000009095) #29	ENSMPUG00000009106	CRISP1 (ENSMPUG00000009126) #33	PGK2 (ENSMPUG00000009179) #34	CRISP3 (ENSMPUG00000009188) #35	CRISP2 (ENSMPUG00000009206) #36	RHAG (ENSMPUG00000009226) #37	ENSMPUG00000009246	ENSMPUG00000009342
American mink	MODERN SPECIES	140	KLHL31 (ENSNVIG00000008175)	GCLC (ENSNVIG00000008195)	ELOVL5 (ENSNVIG00000008437) #8	GCM1 (ENSNVIG00000008468) #9	FBXO9 (ENSNVIG00000008485) #10	CILK1 (ENSNVIG00000008499) #11	ENSNVIG00000008538 #12	GSTA5 (ENSNVIG00000008573)	ENSNVIG00000008592	GSTA5 (ENSNVIG00000008633) #15	ENSNVIG00000008670	TMEM14A (ENSNVIG00000008776) #17	TRAM2 (ENSNVIG00000008831) #18	EFHC1 (ENSNVIG00000008855) #20	MPRB (ENSNVIG00000008871) #21	MCM3 (ENSNVIG00000008873) #22	IL17F (ENSNVIG00000008918) #23
Canidae	ANCESTRAL SPECIES	6	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778.a.a.a #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Canis_lupus	ANCESTRAL SPECIES	11	ENSGT00390000011908	ENSGT00950000182891.a.a.b.a.b.a	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000009040.f	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778.a.a.a #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510
Dingo	MODERN SPECIES	276	ENSCAFG00020013338	ELOVL5 (ENSCAFG00020013335) #8	GCM1 (ENSCAFG00020013333) #9	ENSCAFG00020013324	FBXO9 (ENSCAFG00020013321) #10	CILK1 (ENSCAFG00020013302) #11	ENSCAFG00020013292 #12	ENSCAFG00020013287	ENSCAFG00020013286	ENSCAFG00020013267	ENSCAFG00020013223	TMEM14A (ENSCAFG00020013218) #17	TRAM2 (ENSCAFG00020013215) #18	EFHC1 (ENSCAFG00020013152) #20	PAQR8 (ENSCAFG00020013138) #21	MCM3 (ENSCAFG00020013128) #22	IL17F (ENSCAFG00020013124) #23	IL17A (ENSCAFG00020013118) #25	ENSCAFG00020013110	ENSCAFG00020013106	ENSCAFG00020013095 #26	ENSCAFG00020013074	TFAP2B (ENSCAFG00020013037) #28	TFAP2D (ENSCAFG00020013014) #29	ENSCAFG00020012997 #30	DEFB110 (ENSCAFG00020012995) #31	DEFB113 (ENSCAFG00020012992)	DEFB114 (ENSCAFG00020012990) #32	CRISP1 (ENSCAFG00020012976) #33	PGK2 (ENSCAFG00020012973) #34	CRISP3 (ENSCAFG00020012950) #35
Dog	MODERN SPECIES	3	ENSCAFG00845010216	ELOVL5 (ENSCAFG00845010176) #8	GCM1 (ENSCAFG00845010149) #9	ENSCAFG00845010095	FBXO9 (ENSCAFG00845010007) #10	CILK1 (ENSCAFG00845009901) #11	GSTA4 (ENSCAFG00845009775) #12	ENSCAFG00845009716	ENSCAFG00845009638	ENSCAFG00845009595	ENSCAFG00845009512 #17	ENSCAFG00845009462	TRAM2 (ENSCAFG00845009321) #18	EFHC1 (ENSCAFG00845009042) #20	PAQR8 (ENSCAFG00845008976) #21	MCM3 (ENSCAFG00845008858) #22	ENSCAFG00845008815 #23	ENSCAFG00845008776 #25	PKHD1 (ENSCAFG00845007749) #26	TFAP2B (ENSCAFG00845007336) #28	TFAP2D (ENSCAFG00845007225) #29	DEFB112 (ENSCAFG00845007163) #30	DEFB110 (ENSCAFG00845007134) #31	DEFB113 (ENSCAFG00845007099)	DEFB114 (ENSCAFG00845007058) #32	ENSCAFG00845006978 #33	PGK2 (ENSCAFG00845006942) #34	CRISP2 (ENSCAFG00845006782) #35	RHAG (ENSCAFG00845006661) #37	ENSCAFG00845006583	ENSCAFG00845006548
Red fox	MODERN SPECIES	7	GCLC (ENSVVUG00000000995)	ENSVVUG00000000947	ENSVVUG00000000903	ELOVL5 (ENSVVUG00000000875) #8	GCM1 (ENSVVUG00000000853) #9	FBXO9 (ENSVVUG00000000847) #10	ICK (ENSVVUG00000000836) #11	GSTA4 (ENSVVUG00000000802) #12	ENSVVUG00000000787	GSTA3 (ENSVVUG00000000776) #13	ENSVVUG00000000107	ENSVVUG00000000047 #17	TRAM2 (ENSVVUG00000000039) #18	EFHC1 (ENSVVUG00000000034) #20	PAQR8 (ENSVVUG00000000031) #21	MCM3 (ENSVVUG00000000023) #22	ENSVVUG00000000020 #23	IL17A (ENSVVUG00000029390) #25	PKHD1 (ENSVVUG00000029354) #26	TFAP2B (ENSVVUG00000029350) #28	TFAP2D (ENSVVUG00000029349) #29	ENSVVUG00000029343 #30	DEFB110 (ENSVVUG00000029342) #31	DEFB113 (ENSVVUG00000029341)	DEFB114 (ENSVVUG00000029340) #32	CRISP1 (ENSVVUG00000029339) #33	PGK2 (ENSVVUG00000029337) #34	CRISP2 (ENSVVUG00000029335) #36	RHAG (ENSVVUG00000029332) #37	ENSVVUG00000029330	GLYATL3 (ENSVVUG00000029329)
Felidae	ANCESTRAL SPECIES	5	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00910000147043	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36
Tiger	MODERN SPECIES	502	LRRC1 (ENSPTIG00000016682)	KLHL31 (ENSPTIG00000015573)	GCLC (ENSPTIG00000012154)	ELOVL5 (ENSPTIG00000010022) #8	GCM1 (ENSPTIG00000008977) #9	FBXO9 (ENSPTIG00000006392) #10	CILK1 (ENSPTIG00000005233) #11	GSTA4 (ENSPTIG00000001771) #12	ENSPTIG00000019692	ENSPTIG00000019425	ENSPTIG00000012893	TMEM14A (ENSPTIG00000012513) #17	TRAM2 (ENSPTIG00000011782) #18	EFHC1 (ENSPTIG00000020087) #20	PAQR8 (ENSPTIG00000006353) #21	MCM3 (ENSPTIG00000014984) #22	ENSPTIG00000014469 #23	IL17A (ENSPTIG00000013074) #25	PKHD1 (ENSPTIG00000016269) #26	TFAP2B (ENSPTIG00000015692) #28	TFAP2D (ENSPTIG00000014790) #29	ENSPTIG00000014718	DEFB110 (ENSPTIG00000013917) #31	DEFB113 (ENSPTIG00000013601)	DEFB114 (ENSPTIG00000013188) #32	ENSPTIG00000013176	CRISP1 (ENSPTIG00000010800) #33	PGK2 (ENSPTIG00000005933) #34	CRISP3 (ENSPTIG00000008183) #35	CRISP2 (ENSPTIG00000007728) #36	RHAG (ENSPTIG00000006917) #37
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00900000143290	ENSGT00910000147043	ENSGT00390000006761 #31	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00940000162362 #33	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35
leopard	MODERN SPECIES	30	KLHL31 (ENSPPRG00000008171)	GCLC (ENSPPRG00000008679)	ELOVL5 (ENSPPRG00000008980) #8	GCM1 (ENSPPRG00000009556) #9	FBXO9 (ENSPPRG00000009682) #10	CILK1 (ENSPPRG00000009939) #11	GSTA4 (ENSPPRG00000010076) #12	ENSPPRG00000010128	ENSPPRG00000012459	ENSPPRG00000012829	ENSPPRG00000012997	TMEM14A (ENSPPRG00000013164) #17	TRAM2 (ENSPPRG00000013374) #18	EFHC1 (ENSPPRG00000017929) #20	PAQR8 (ENSPPRG00000014367) #21	MCM3 (ENSPPRG00000025020) #22	IL17F (ENSPPRG00000025009) #23	IL17A (ENSPPRG00000024972) #25	PKHD1 (ENSPPRG00000024687) #26	ENSPPRG00000014502	TFAP2B (ENSPPRG00000024586) #28	TFAP2D (ENSPPRG00000024559) #29	ENSPPRG00000024419	DEFB110 (ENSPPRG00000024311) #31	DEFB113 (ENSPPRG00000024287)	DEFB114 (ENSPPRG00000024231) #32	ENSPPRG00000014518	ENSPPRG00000023824 #33	PGK2 (ENSPPRG00000014531) #34	CRISP3 (ENSPPRG00000023334) #35	CRISP2 (ENSPPRG00000023239) #36
lion	MODERN SPECIES	5	KLHL31 (ENSPLOG00000004028)	GCLC (ENSPLOG00000003932)	ELOVL5 (ENSPLOG00000003839) #8	GCM1 (ENSPLOG00000003807) #9	FBXO9 (ENSPLOG00000003770) #10	CILK1 (ENSPLOG00000003736) #11	GSTA4 (ENSPLOG00000003698) #12	ENSPLOG00000003677	ENSPLOG00000003654	ENSPLOG00000003645	ENSPLOG00000003623	TMEM14A (ENSPLOG00000003538) #17	TRAM2 (ENSPLOG00000003508) #18	EFHC1 (ENSPLOG00000003384) #20	PAQR8 (ENSPLOG00000003284) #21	MCM3 (ENSPLOG00000003222) #22	IL17F (ENSPLOG00000003194) #23	IL17A (ENSPLOG00000003180) #25	PKHD1 (ENSPLOG00000002992) #26	TFAP2B (ENSPLOG00000002864) #28	TFAP2D (ENSPLOG00000002828) #29	ENSPLOG00000002805	ENSPLOG00000002784	DEFB113 (ENSPLOG00000002765)	DEFB114 (ENSPLOG00000002746) #32	ENSPLOG00000002728	CRISP1 (ENSPLOG00000002615) #33	PGK2 (ENSPLOG00000002586) #34	CRISP3 (ENSPLOG00000002561) #35	CRISP2 (ENSPLOG00000002530) #36	RHAG (ENSPLOG00000002490) #37
Cat	MODERN SPECIES	236	KLHL31 (ENSFCAG00000014353)	GCLC (ENSFCAG00000022171)	ELOVL5 (ENSFCAG00000000586) #8	GCM1 (ENSFCAG00000035631) #9	FBXO9 (ENSFCAG00000029612) #10	CILK1 (ENSFCAG00000005238) #11	GSTA4 (ENSFCAG00000036046) #12	ENSFCAG00000024966	ENSFCAG00000049404	ENSFCAG00000005236	ENSFCAG00000034807	TMEM14A (ENSFCAG00000025366) #17	TRAM2 (ENSFCAG00000002975) #18	EFHC1 (ENSFCAG00000011487) #20	PAQR8 (ENSFCAG00000031260) #21	MCM3 (ENSFCAG00000026755) #22	IL17F (ENSFCAG00000008513) #23	IL17A (ENSFCAG00000033485) #25	PKHD1 (ENSFCAG00000009219) #26	TFAP2B (ENSFCAG00000015482) #28	TFAP2D (ENSFCAG00000003435) #29	DEFB112 (ENSFCAG00000010863) #30	DEFB110 (ENSFCAG00000024655) #31	DEFB113 (ENSFCAG00000038240)	DEFB114 (ENSFCAG00000039120) #32	ENSFCAG00000045877	CRISP1 (ENSFCAG00000002580) #33	PGK2 (ENSFCAG00000025078) #34	CRISP3 (ENSFCAG00000028647) #35	RHAG (ENSFCAG00000001258) #37	ENSFCAG00000051234
Atlantogenata	ANCESTRAL SPECIES	3	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00400000023306	ENSGT00390000016155 #32	ENSGT00400000023650	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37
Xenarthra	ANCESTRAL SPECIES	656												ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26
Sloth	MODERN SPECIES	1166																MCM3 (ENSCHOG00000005508) #22
Armadillo	MODERN SPECIES	2088												ENSDNOG00000044229 #17	TRAM2 (ENSDNOG00000004095) #18	EFHC1 (ENSDNOG00000012190) #20	PAQR8 (ENSDNOG00000005176) #21	MCM3 (ENSDNOG00000007714) #22	IL17F (ENSDNOG00000039389) #23	IL17A (ENSDNOG00000011858) #25	PKHD1 (ENSDNOG00000014976) #26
Afrotheria	ANCESTRAL SPECIES	24	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00400000023306	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00390000007738	ENSGT00950000183133.f
Afrotheria_a	ANCESTRAL SPECIES	23	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000162778 #12	ENSGT00940000161750	ENSGT00940000154526.h	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00910000145322	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00410000029004 #30	ENSGT00400000023306	ENSGT00390000008820.e.a #34	ENSGT00940000162013 #35	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00390000007738	ENSGT00950000183133.f
Elephant	MODERN SPECIES	1	KLHL31 (ENSLAFG00000003844)	GCLC (ENSLAFG00000018430)	ELOVL5 (ENSLAFG00000018020) #8	GCM1 (ENSLAFG00000012093) #9	FBXO9 (ENSLAFG00000012088) #10	CILK1 (ENSLAFG00000005014) #11	GSTA4 (ENSLAFG00000005012) #12	ENSLAFG00000031171	ENSLAFG00000031720	ENSLAFG00000027205	ENSLAFG00000026604	TMEM14A (ENSLAFG00000001644) #17	TRAM2 (ENSLAFG00000005516) #18	EFHC1 (ENSLAFG00000005509) #20	PAQR8 (ENSLAFG00000009293) #21	MCM3 (ENSLAFG00000010584) #22	IL17F (ENSLAFG00000002150) #23	IL17A (ENSLAFG00000001544) #25	ENSLAFG00000031836	ENSLAFG00000012699 #26	ENSLAFG00000032031 #26	ENSLAFG00000030680	TFAP2B (ENSLAFG00000027209) #28	TFAP2D (ENSLAFG00000006172) #29	ENSLAFG00000016703 #30	DEFB113 (ENSLAFG00000020991)	PGK2 (ENSLAFG00000008546) #34	ENSLAFG00000000995 #35	CRISP2 (ENSLAFG00000005361) #36	ENSLAFG00000031706	RHAG (ENSLAFG00000004728) #37
Hyrax	MODERN SPECIES	1061																MCM3 (ENSPCAG00000006957) #22	ENSPCAG00000006944 #23
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	10058																ENSETEG00000008204 #22
Tenrec	MODERN SPECIES	1380																ENSETEG00000015458 #22
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00390000002428.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000161750	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000161750	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Diprotodontia	ANCESTRAL SPECIES	37	ENSGT00940000161065	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000161750	ENSGT00940000166012	ENSGT00940000158206 #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Diprotodontia_a	ANCESTRAL SPECIES	36	ENSGT00390000015862	ENSGT00940000154025.b	ENSGT00940000158352	ENSGT00390000011908	ENSGT01050000244838.C.b #8	ENSGT00390000006777.a #9	ENSGT00390000014256 #10	ENSGT00940000158807 #11	ENSGT00940000161750	ENSGT00940000166012.b	ENSGT00940000166012.a.a	ENSGT00940000158206.f #17	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000161882 #25	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162362 #33	ENSGT00940000156439 #36	ENSGT00940000167629	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f	ENSGT00390000005599	ENSGT00390000011892	ENSGT00940000156827	ENSGT01100000263524.B.a
Common wonbat	MODERN SPECIES	257												ENSVURG00010013233 #18	EFHC1 (ENSVURG00010013221) #20	PAQR8 (ENSVURG00010013216) #21	ENSVURG00010013213	MCM3 (ENSVURG00010013208) #22	ENSVURG00010013204 #23	PKHD1 (ENSVURG00010013187) #26
koala	MODERN SPECIES	54	GCLC (ENSPCIG00000018141)	ENSPCIG00000018142	ELOVL5 (ENSPCIG00000012473) #8	GCM1 (ENSPCIG00000012474) #9	FBXO9 (ENSPCIG00000012476) #10	CILK1 (ENSPCIG00000034988) #11	ENSPCIG00000030864	ENSPCIG00000032157	ENSPCIG00000013280	ENSPCIG00000003985	ENSPCIG00000013272	TRAM2 (ENSPCIG00000003947) #18	EFHC1 (ENSPCIG00000003906) #20	PAQR8 (ENSPCIG00000037305) #21	ENSPCIG00000014334	MCM3 (ENSPCIG00000014331) #22	ENSPCIG00000034042 #23	IL17A (ENSPCIG00000035772) #25	PKHD1 (ENSPCIG00000003504) #26	TFAP2B (ENSPCIG00000007165) #28	TFAP2D (ENSPCIG00000007171) #29	ENSPCIG00000023828	ENSPCIG00000036631 #33	ENSPCIG00000019838	CRISP2 (ENSPCIG00000019841) #36	ENSPCIG00000015108	ENSPCIG00000030205	RHAG (ENSPCIG00000030203) #37	ENSPCIG00000030199	GLYATL3 (ENSPCIG00000032282)	ENSPCIG00000012996
Wallaby	MODERN SPECIES	2089																MCM3 (ENSMEUG00000001924) #22
Tasmanian devil	MODERN SPECIES	3	TINAG (ENSSHAG00000018382)	ENSSHAG00000031578	LRRC1 (ENSSHAG00000017632)	KLHL31 (ENSSHAG00000017310)	GCLC (ENSSHAG00000016777)	ELOVL5 (ENSSHAG00000028536) #8	GCM1 (ENSSHAG00000015905) #9	FBXO9 (ENSSHAG00000015737) #10	CILK1 (ENSSHAG00000015447) #11	ENSSHAG00000028098	ENSSHAG00000026000	TMEM14A (ENSSHAG00000014906) #17	TRAM2 (ENSSHAG00000014037) #18	EFHC1 (ENSSHAG00000013635) #20	PAQR8 (ENSSHAG00000031854) #21	MCM3 (ENSSHAG00000012437) #22	ENSSHAG00000032353 #23	IL17A (ENSSHAG00000012109) #25	PKHD1 (ENSSHAG00000010639) #26	TFAP2B (ENSSHAG00000012585) #28	TFAP2D (ENSSHAG00000028854) #29	ENSSHAG00000029329	ENSSHAG00000022744	ENSSHAG00000006653	ENSSHAG00000000853 #33	CRISP2 (ENSSHAG00000001880) #36	ENSSHAG00000023038	ENSSHAG00000031560	GLYATL3 (ENSSHAG00000004258)	ENSSHAG00000003275	MMUT (ENSSHAG00000001599)
Opossum	MODERN SPECIES	1	ENSMODG00000018795	KLHL31 (ENSMODG00000018798)	GCLC (ENSMODG00000018800)	ENSMODG00000046779	ELOVL5 (ENSMODG00000018802) #8	GCM1 (ENSMODG00000018803) #9	FBXO9 (ENSMODG00000018806) #10	CILK1 (ENSMODG00000018808) #11	ENSMODG00000018813	ENSMODG00000018812	ENSMODG00000018815	ENSMODG00000039234 #17	TRAM2 (ENSMODG00000018818) #18	EFHC1 (ENSMODG00000018819) #20	PAQR8 (ENSMODG00000023518) #21	MCM3 (ENSMODG00000018822) #22	ENSMODG00000018823 #23	IL17A (ENSMODG00000018824) #25	PKHD1 (ENSMODG00000018828) #26	TFAP2B (ENSMODG00000018831) #28	TFAP2D (ENSMODG00000018834) #29	ENSMODG00000018838 #33	CRISP2 (ENSMODG00000025686) #36	ENSMODG00000039954	ENSMODG00000018844	ENSMODG00000018846 #36	RHAG (ENSMODG00000018849) #37	ENSMODG00000018850	GLYATL3 (ENSMODG00000041446)	MMUT (ENSMODG00000018855)	ENSMODG00000043712
Platypus	MODERN SPECIES	84	HTR4 (ENSOANG00000009365)	SLC26A2 (ENSOANG00000037790)	PDE6A (ENSOANG00000009367)	PPARGC1B (ENSOANG00000009368)	ARHGEF37 (ENSOANG00000039639)	CSNK1A1 (ENSOANG00000002863)	ENSOANG00000013479	PCYOX1L (ENSOANG00000013478)	GRPEL2 (ENSOANG00000011040)	ENSOANG00000042936	ENSOANG00000003988	TRAM2 (ENSOANG00000020088) #18	EFHC1 (ENSOANG00000003986) #20	PAQR8 (ENSOANG00000003985) #21	ENSOANG00000003133 #25	MCM3 (ENSOANG00000039131) #22	PKHD1 (ENSOANG00000003131) #26	TFAP2B (ENSOANG00000003130) #28	TFAP2D (ENSOANG00000003129) #29	ENSOANG00000041605	ENSOANG00000037001	ENSOANG00000046212	ENSOANG00000014322 #33	CRISP2 (ENSOANG00000032114) #36	ENSOANG00000029415 #36	ENSOANG00000012923	ENSOANG00000003948	ENSOANG00000002004	ENSOANG00000012924	ENSOANG00000003950	ENSOANG00000029648
Sauria	ANCESTRAL SPECIES	1	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01040000244791	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.s #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000162362 #33	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00450000040279	ENSGT01070000253766.C	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Aves	ANCESTRAL SPECIES	10									ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Neognathae	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Anatidae	ANCESTRAL SPECIES		ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892
Pink-footed goose	MODERN SPECIES	47									ENSABRG00000004022	ENSABRG00000004011	ENSABRG00000004002	XKR5 (ENSABRG00000003990)	TRAM2 (ENSABRG00000003981) #18	EFHC1 (ENSABRG00000003968) #20	PAQR8 (ENSABRG00000003957) #21	MCM3 (ENSABRG00000003938) #22	ENSABRG00000003923 #23	ENSABRG00000003911 #23	PKHD1 (ENSABRG00000003777) #26	ENSABRG00000003752	TFAP2B (ENSABRG00000003733) #28	TFAP2D (ENSABRG00000003701) #29	ENSABRG00000003661 #36	CRISP2 (ENSABRG00000003618) #36	RHAG (ENSABRG00000003580) #37	ENSABRG00000003543	ENSABRG00000003534	GLYATL3 (ENSABRG00000003506)	CENPQ (ENSABRG00000003478)	MMUT (ENSABRG00000003449)	ENSABRG00000003415
Duck	MODERN SPECIES	21	CTSB (ENSAPLG00000011195)	ENSAPLG00000020811	ENSAPLG00000011923	ENSAPLG00000011932	ENSAPLG00000011572	ENSAPLG00000031088	ENSAPLG00000012251	ENSAPLG00000012287	ENSAPLG00000027595	ENSAPLG00000027564	ENSAPLG00000001297	ENSAPLG00000012580	TRAM2 (ENSAPLG00000012648) #18	EFHC1 (ENSAPLG00000012873) #20	PAQR8 (ENSAPLG00000001301) #21	MCM3 (ENSAPLG00000013058) #22	ENSAPLG00000013357 #23	ENSAPLG00000028302 #23	PKHD1 (ENSAPLG00000013410) #26	ENSAPLG00000016671	TFAP2B (ENSAPLG00000013905) #28	TFAP2D (ENSAPLG00000014639) #29	CRISP3 (ENSAPLG00000014850) #35	CRISP2 (ENSAPLG00000018429) #36	RHAG (ENSAPLG00000015305) #37	ENSAPLG00000015676	ENSAPLG00000015871	TNFRSF21 (ENSAPLG00000003358)	ENSAPLG00000019835	ADGRF5 (ENSAPLG00000004634)	ENSAPLG00000004740
Phasianidae	ANCESTRAL SPECIES	28	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710.b	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B
Japanese quail	MODERN SPECIES	21	ENSCJPG00005000979	ENSCJPG00005000994	AvBD10 (ENSCJPG00005001000)	AvBD9 (ENSCJPG00005001006)	ENSCJPG00005001019	ENSCJPG00005001035	ENSCJPG00005001043	AvBD1 (ENSCJPG00005001050)	AvBD5 (ENSCJPG00005001067)	ENSCJPG00005001077	ENSCJPG00005001086	XKR5 (ENSCJPG00005001097)	TRAM2 (ENSCJPG00005001100) #18	EFHC1 (ENSCJPG00005001110) #20	PAQR8 (ENSCJPG00005001120) #21	MCM3 (ENSCJPG00005001126) #22	ENSCJPG00005001135 #23	ENSCJPG00005001139 #23	PKHD1 (ENSCJPG00005001217) #26	TFAP2B (ENSCJPG00005002491) #28	TFAP2D (ENSCJPG00005002497) #29	ENSCJPG00005002501 #36	CRISP2 (ENSCJPG00005002502) #36	RHAG (ENSCJPG00005002504) #37	ENSCJPG00005002505	ENSCJPG00005002508	CENPQ (ENSCJPG00005002511)	MMUT (ENSCJPG00005002514)	ENSCJPG00005002516	ENSCJPG00005002519	CDC5L (ENSCJPG00005002523)
Phasianidae_b	ANCESTRAL SPECIES	29	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710.a	ENSGT00420000030710.b	ENSGT00530000068084	ENSGT00730000114755	ENSGT01010000224714	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.k	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Chicken	MODERN SPECIES	22	ENSGALG00010011415	AvBD11 (ENSGALG00010011435)	AvBD10 (ENSGALG00010011448)	AvBD9 (ENSGALG00010011980)	AvBD8 (ENSGALG00010011455)	AvBD7 (ENSGALG00010007851)	AvBD6 (ENSGALG00010011870)	DEFB4A (ENSGALG00010007860)	AvBD1 (ENSGALG00010007863)	AvBD3 (ENSGALG00010007870)	AvBD4 (ENSGALG00010007875)	AvBD14 (ENSGALG00010007881)	ENSGALG00010007890	EFHC1 (ENSGALG00010007897) #20	PAQR8 (ENSGALG00010007914) #21	MCM3 (ENSGALG00010007916) #22	IL17F (ENSGALG00010007919) #23	IL17A (ENSGALG00010007922) #23	PKHD1 (ENSGALG00010007934) #26	TFAP2B (ENSGALG00010007845) #28	TFAP2D (ENSGALG00010007848) #29	CRISP2 (ENSGALG00010008054) #35	CRISP2 (ENSGALG00010008061) #36	RHAG (ENSGALG00010008074) #37	CYP2AC1 (ENSGALG00010008084)	CYP2AC2 (ENSGALG00010011879)	CENPQ (ENSGALG00010008101)	MMUT (ENSGALG00010008105)	OPN5L2 (ENSGALG00010008109)	CDC5L (ENSGALG00010008120)	ENSGALG00010008124
Turkey	MODERN SPECIES	11	ENSMGAG00000020465	ENSMGAG00000014265	ENSMGAG00000018734	ENSMGAG00000014263	ENSMGAG00000014259	ENSMGAG00000014261	ENSMGAG00000019876	ENSMGAG00000014250 #37	ENSMGAG00000014251	ENSMGAG00000014257	CRISP2 (ENSMGAG00000020479) #36	ENSMGAG00000014249 #36	ENSMGAG00000017668 #29	ENSMGAG00000020296 #28	ENSMGAG00000014245 #28	ENSMGAG00000014229 #22	ENSMGAG00000014236 #23	ENSMGAG00000014238 #23	TRAM2 (ENSMGAG00000014225) #18	ENSMGAG00000014226 #20	PAQR8 (ENSMGAG00000015659) #21	ENSMGAG00000014222	ENSMGAG00000005531	ENSMGAG00000021529	ENSMGAG00000005535	ENSMGAG00000016469	ENSMGAG00000014213	ENSMGAG00000014212	ENSMGAG00000021776	ENSMGAG00000014220	ENSMGAG00000021998
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00600000085213
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.b	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00530000069121	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT01030000235606.a.a	ENSGT01030000235606.a.b	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.a	ENSGT01030000237530	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Medium ground finch	MODERN SPECIES	80	ENSGFOG00000001513	ENSGFOG00000001508	ENSGFOG00000001498	ENSGFOG00000001489	ENSGFOG00000001483	ENSGFOG00000001478	ENSGFOG00000001472	ENSGFOG00000001465	ENSGFOG00000001460	ENSGFOG00000001454	ENSGFOG00000001448	XKR5 (ENSGFOG00000001438)	TRAM2 (ENSGFOG00000001428) #18	ENSGFOG00000001414 #20	ENSGFOG00000001399 #20	MCM3 (ENSGFOG00000001382) #22	ENSGFOG00000001374 #23	ENSGFOG00000001354 #23	PKHD1 (ENSGFOG00000001306) #26	ENSGFOG00000001279	TFAP2B (ENSGFOG00000001259) #28	TFAP2D (ENSGFOG00000001241) #29	ENSGFOG00000001233 #36	CRISP2 (ENSGFOG00000001225) #36	RHAG (ENSGFOG00000001210) #37	ENSGFOG00000001156	CENPQ (ENSGFOG00000001131)	MMUT (ENSGFOG00000001120)	ENSGFOG00000001113	ENSGFOG00000001103	CDC5L (ENSGFOG00000001077)
Passeroidea	ANCESTRAL SPECIES		ENSGT00530000069149	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.d	ENSGT01030000235606.a.a	ENSGT01030000237530	ENSGT01030000235483	ENSGT01030000235503	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738
Zebra finch	MODERN SPECIES	23	ENSTGUG00000027030	ENSTGUG00000023222	ENSTGUG00000019642	ENSTGUG00000022992	ENSTGUG00000026460	ENSTGUG00000020966	ENSTGUG00000020849	ENSTGUG00000025056	ENSTGUG00000024610	ENSTGUG00000013282	ENSTGUG00000020291	XKR5 (ENSTGUG00000024722)	TRAM2 (ENSTGUG00000013281) #18	EFHC1 (ENSTGUG00000013278) #20	PAQR8 (ENSTGUG00000020284) #21	MCM3 (ENSTGUG00000013275) #22	ENSTGUG00000013274 #23	ENSTGUG00000013272 #23	PKHD1 (ENSTGUG00000013268) #26	TFAP2B (ENSTGUG00000022691) #28	TFAP2D (ENSTGUG00000013264) #29	ENSTGUG00000013263 #36	CRISP2 (ENSTGUG00000024271) #36	RHAG (ENSTGUG00000013262) #37	ENSTGUG00000013260	ENSTGUG00000023639	MMUT (ENSTGUG00000013257)	ENSTGUG00000013256	ENSTGUG00000023300	CDC5L (ENSTGUG00000013251)	SUPT3H (ENSTGUG00000013250)
Common canary	MODERN SPECIES	1	ENSSCAG00000014462	ENSSCAG00000014459	ENSSCAG00000014456	ENSSCAG00000014455	ENSSCAG00000014454	ENSSCAG00000014450	ENSSCAG00000014447	ENSSCAG00000014449	ENSSCAG00000014445	ENSSCAG00000014444	ENSSCAG00000014442	TRAM2 (ENSSCAG00000014440) #18	EFHC1 (ENSSCAG00000014419) #20	ENSSCAG00000014417	PAQR8 (ENSSCAG00000014415) #21	MCM3 (ENSSCAG00000014410) #22	ENSSCAG00000014404 #23	ENSSCAG00000014390 #23	PKHD1 (ENSSCAG00000014315) #26	TFAP2B (ENSSCAG00000014289) #28	TFAP2D (ENSSCAG00000014286) #29	ENSSCAG00000014279 #36	CRISP2 (ENSSCAG00000014273) #36	RHAG (ENSSCAG00000014264) #37	ENSSCAG00000014256	CENPQ (ENSSCAG00000014246)	MMUT (ENSSCAG00000014237)	ENSSCAG00000014230	ENSSCAG00000014225	CDC5L (ENSSCAG00000014215)	SUPT3H (ENSSCAG00000014193)
Flycatcher	MODERN SPECIES	21	ENSFALG00000002479	ENSFALG00000002478	ENSFALG00000002477	ENSFALG00000002473	ENSFALG00000024522	ENSFALG00000023902	ENSFALG00000023742	ENSFALG00000027123	ENSFALG00000027745	ENSFALG00000024001	ENSFALG00000002122	ENSFALG00000025192	TRAM2 (ENSFALG00000027316) #18	EFHC1 (ENSFALG00000002100) #20	PAQR8 (ENSFALG00000014850) #21	MCM3 (ENSFALG00000002082) #22	ENSFALG00000002066 #23	ENSFALG00000002061 #23	PKHD1 (ENSFALG00000002049) #26	ENSFALG00000028076	TFAP2B (ENSFALG00000012772) #28	TFAP2D (ENSFALG00000012770) #29	ENSFALG00000012765 #36	CRISP2 (ENSFALG00000012752) #36	RHAG (ENSFALG00000012740) #37	ENSFALG00000023033	CENPQ (ENSFALG00000012725)	MMUT (ENSFALG00000012716)	ENSFALG00000012705	ENSFALG00000025757	CDC5L (ENSFALG00000012688)
Great tit	MODERN SPECIES	22	ENSPMJG00000013029	ENSPMJG00000013028	ENSPMJG00000013027	ENSPMJG00000013026	ENSPMJG00000013025	ENSPMJG00000013024	ENSPMJG00000013023	ENSPMJG00000013022	ENSPMJG00000013021	ENSPMJG00000013020	ENSPMJG00000013019	XKR5 (ENSPMJG00000013018)	TRAM2 (ENSPMJG00000013017) #18	EFHC1 (ENSPMJG00000013016) #20	PAQR8 (ENSPMJG00000013015) #21	MCM3 (ENSPMJG00000013013) #22	ENSPMJG00000013012 #23	ENSPMJG00000013010 #23	PKHD1 (ENSPMJG00000013009) #26	TFAP2B (ENSPMJG00000013007) #28	TFAP2D (ENSPMJG00000013006) #29	ENSPMJG00000013005	ENSPMJG00000013003 #36	CRISP2 (ENSPMJG00000013002) #36	RHAG (ENSPMJG00000013001) #37	ENSPMJG00000013000	CENPQ (ENSPMJG00000012999)	MMUT (ENSPMJG00000012998)	ENSPMJG00000012997	ENSPMJG00000012996	CDC5L (ENSPMJG00000012995)
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT01030000235368	ENSGT00960000187509	ENSGT00530000067237	ENSGT00420000030710	ENSGT00530000068084	ENSGT00730000114755.a	ENSGT00960000189777	ENSGT01030000235606	ENSGT01030000235483	ENSGT01030000235503	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.e.b #23	ENSGT00940000156618.e.a #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.l	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00600000085213
Golden eagle	MODERN SPECIES	6	ENSACCG00020008674	ENSACCG00020008696	ENSACCG00020008712	ENSACCG00020008727	ENSACCG00020008737	ENSACCG00020008743	ENSACCG00020008760	ENSACCG00020008771	ENSACCG00020008784	ENSACCG00020008805	ENSACCG00020008813	XKR5 (ENSACCG00020008835)	TRAM2 (ENSACCG00020008859) #18	EFHC1 (ENSACCG00020008887) #20	PAQR8 (ENSACCG00020008905) #21	MCM3 (ENSACCG00020008930) #22	ENSACCG00020008950 #23	ENSACCG00020008978 #23	PKHD1 (ENSACCG00020009046) #26	TFAP2B (ENSACCG00020009084) #28	TFAP2D (ENSACCG00020009109) #29	CRISP2 (ENSACCG00020009125) #36	RHAG (ENSACCG00020009143) #37	ENSACCG00020009158	CENPQ (ENSACCG00020009178)	MMUT (ENSACCG00020009201)	ENSACCG00020009214	ENSACCG00020009222	CDC5L (ENSACCG00020008066)	SUPT3H (ENSACCG00020008080)	RUNX2 (ENSACCG00020008097)
Kakapo	MODERN SPECIES	23	ENSSHBG00005013131	ENSSHBG00005013121	ENSSHBG00005013115	ENSSHBG00005013104	ENSSHBG00005013080	ENSSHBG00005013058	ENSSHBG00005013046	ENSSHBG00005013039	ENSSHBG00005012961	ENSSHBG00005012931	ENSSHBG00005012911	XKR5 (ENSSHBG00005012889)	TRAM2 (ENSSHBG00005012874) #18	EFHC1 (ENSSHBG00005012808) #20	PAQR8 (ENSSHBG00005012766) #21	MCM3 (ENSSHBG00005012482) #22	ENSSHBG00005012367 #23	ENSSHBG00005012349 #23	TFAP2B (ENSSHBG00005012191) #28	TFAP2D (ENSSHBG00005012161) #29	ENSSHBG00005012112 #36	CRISP2 (ENSSHBG00005012078) #36	RHAG (ENSSHBG00005012046) #37	ENSSHBG00005012003	CENPQ (ENSSHBG00005011988)	MMUT (ENSSHBG00005011965)	ENSSHBG00005011951	ENSSHBG00005011936	CDC5L (ENSSHBG00005011911)	ENSSHBG00005011887	SUPT3H (ENSSHBG00005011873)
African ostrich	MODERN SPECIES	677								ENSSCUG00000008372	ENSSCUG00000008374	ENSSCUG00000008376	ENSSCUG00000008377	XKR5 (ENSSCUG00000008381)	TRAM2 (ENSSCUG00000008384) #18	EFHC1 (ENSSCUG00000008389) #20	PAQR8 (ENSSCUG00000008393) #21	MCM3 (ENSSCUG00000008397) #22	ENSSCUG00000008402 #23	ENSSCUG00000008406 #23	PKHD1 (ENSSCUG00000008417) #26	ENSSCUG00000008436	TFAP2B (ENSSCUG00000008439) #28	TFAP2D (ENSSCUG00000008443) #29	ENSSCUG00000008446 #36	CRISP2 (ENSSCUG00000008449) #36	RHAG (ENSSCUG00000008452) #37
Australian saltwater crocodile	MODERN SPECIES	38	ENSCPRG00005002289	CTSB (ENSCPRG00005002136)	ENSCPRG00005002116	ENSCPRG00005002114	ENSCPRG00005002090	ENSCPRG00005002086	ENSCPRG00005002079	ENSCPRG00005002071	ENSCPRG00005002069	ENSCPRG00005002060	ENSCPRG00005002057	XKR5 (ENSCPRG00005002053)	TRAM2 (ENSCPRG00005002038) #18	EFHC1 (ENSCPRG00005001978) #20	PAQR8 (ENSCPRG00005001965) #21	MCM3 (ENSCPRG00005001928) #22	ENSCPRG00005001908 #23	ENSCPRG00005001893 #23	PKHD1 (ENSCPRG00005001865) #26	ENSCPRG00005001798	TFAP2B (ENSCPRG00005001794) #28	TFAP2D (ENSCPRG00005001788) #29	ENSCPRG00005001766	ENSCPRG00005001748	ENSCPRG00005001719 #36	ENSCPRG00005001610 #36	CRISP2 (ENSCPRG00005001568) #36	ENSCPRG00005001534	RHAG (ENSCPRG00005001518) #37	ENSCPRG00005001147	GLYATL3 (ENSCPRG00005001102)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000157818	ENSGT00390000014037	ENSGT00940000159097	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01030000235367	ENSGT01030000235368	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00940000158680	ENSGT01030000235367	ENSGT00950000186336	ENSGT00990000212697	ENSGT00950000186370	ENSGT00980000200519	ENSGT01030000235368	ENSGT00960000192217	ENSGT00990000207928	ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Emydidae	ANCESTRAL SPECIES	8										ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00950000183133.f.h	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922
Three-toed box turtle	MODERN SPECIES	15											ENSTMTG00000009872	XKR5 (ENSTMTG00000009831)	TRAM2 (ENSTMTG00000009801) #18	EFHC1 (ENSTMTG00000009658) #20	PAQR8 (ENSTMTG00000009614) #21	MCM3 (ENSTMTG00000008814) #22	ENSTMTG00000008740 #23	ENSTMTG00000008721 #23	PKHD1 (ENSTMTG00000008105) #26	TFAP2B (ENSTMTG00000008044) #28	TFAP2D (ENSTMTG00000008019) #29	ENSTMTG00000008013	CRISP3 (ENSTMTG00000007986) #35	ENSTMTG00000007961 #36	CRISP2 (ENSTMTG00000007573) #36	RHAG (ENSTMTG00000007519) #37	GLYATL3 (ENSTMTG00000007494)	CENPQ (ENSTMTG00000007473)	MMUT (ENSTMTG00000007460)	ENSTMTG00000007443	CDC5L (ENSTMTG00000007409)
painted turtle	MODERN SPECIES	2397								ENSCPBG00000003079	ENSCPBG00000003054	ENSCPBG00000003028	ENSCPBG00000003006	XKR5 (ENSCPBG00000002982)	TRAM2 (ENSCPBG00000002965) #18	EFHC1 (ENSCPBG00000002922) #20	PAQR8 (ENSCPBG00000002902) #21	MCM3 (ENSCPBG00000002873) #22	ENSCPBG00000002473 #23	ENSCPBG00000002351 #23	ENSCPBG00000021703 #23	PKHD1 (ENSCPBG00000021692) #26	TFAP2B (ENSCPBG00000021691) #28	TFAP2D (ENSCPBG00000021688) #29	ENSCPBG00000021687	SCAMP1 (ENSCPBG00000021684)	SUPT3H (ENSCPBG00000021682)	RUNX2 (ENSCPBG00000021680)	CLIC5 (ENSCPBG00000021676)	ENPP4 (ENSCPBG00000021674)	ENPP5 (ENSCPBG00000021673)	ENSCPBG00000021672	ENSCPBG00000021668
Testudinidae	ANCESTRAL SPECIES	10										ENSGT00960000188922	ENSGT00710000108307	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.f.a #23	ENSGT00940000156618.f.b #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.r.a #36	ENSGT00940000156439.r.b #36	ENSGT00950000182844.b.a #37	ENSGT00390000005599	ENSGT00390000011892	ENSGT01100000263524.D	ENSGT00940000161979.B	ENSGT00550000074922	ENSGT00390000010738	ENSGT00940000160171
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005007717	ENSGEVG00005007734	ENSGEVG00005007754	ENSGEVG00005007768	ENSGEVG00005007821	ENSGEVG00005007835	ENSGEVG00005007854	ENSGEVG00005007864	ENSGEVG00005007883	ENSGEVG00005007902	ENSGEVG00005007927	ENSGEVG00005007962	TRAM2 (ENSGEVG00005007985) #18	EFHC1 (ENSGEVG00005008122) #20	PAQR8 (ENSGEVG00005008419) #21	MCM3 (ENSGEVG00005008431) #22	ENSGEVG00005008475 #23	ENSGEVG00005008539 #23	PKHD1 (ENSGEVG00005008582) #26	TFAP2B (ENSGEVG00005008797) #28	TFAP2D (ENSGEVG00005008838) #29	ENSGEVG00005008897 #36	CRISP2 (ENSGEVG00005008958) #36	RHAG (ENSGEVG00005009014) #37	ENSGEVG00005009050	ENSGEVG00005009242	CENPQ (ENSGEVG00005009413)	MMUT (ENSGEVG00005009448)	ENSGEVG00005009501	ENSGEVG00005009530	CDC5L (ENSGEVG00005009562)
Abingdon island giant tortoise	MODERN SPECIES	1965						ENSCABG00000000141	ENSCABG00000000150	ENSCABG00000000159	ENSCABG00000000163	ENSCABG00000000168	XKR5 (ENSCABG00000000175)	ENSCABG00000000181	TRAM2 (ENSCABG00000000185) #18	EFHC1 (ENSCABG00000000297) #20	PAQR8 (ENSCABG00000001054) #21	MCM3 (ENSCABG00000001058) #22	ENSCABG00000001179 #23	ENSCABG00000001194 #23	PKHD1 (ENSCABG00000001229) #26
Chinese turtle	MODERN SPECIES	2172													XKR5 (ENSPSIG00000014857)	TRAM2 (ENSPSIG00000014870) #18	EFHC1 (ENSPSIG00000006183) #20	MCM3 (ENSPSIG00000006428) #22	ENSPSIG00000007604 #23	ENSPSIG00000007951 #23	ENSPSIG00000000897 #26	TFAP2B (ENSPSIG00000008002) #28	TFAP2D (ENSPSIG00000008307) #29	ENSPSIG00000008437	ENSPSIG00000008444 #36	ENSPSIG00000008487 #36	CRISP3 (ENSPSIG00000008972) #35	ENSPSIG00000009967 #36	ENSPSIG00000011704 #36	ENSPSIG00000013152 #36	ENSPSIG00000013188 #33	RHAG (ENSPSIG00000013778) #37	ENSPSIG00000014061
Lepidosauria	ANCESTRAL SPECIES		ENSGT00390000010738	ENSGT00550000074922	ENSGT00940000161979.B	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a #37	ENSGT00940000156439.r.b #36	ENSGT00940000162362 #33	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.s #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36
Episquamata	ANCESTRAL SPECIES		ENSGT00940000179889.a	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a #37	ENSGT00940000162362.b #33	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.s #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a #37	ENSGT00940000156439.r.b #36	ENSGT00940000162362.a.a #33	ENSGT00710000108307	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a.c #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.s #36	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000002539	ENSPMRG00000002532	ENSPMRG00000002513	ENSPMRG00000002506	ENSPMRG00000002482	ENSPMRG00000002473	RHAG (ENSPMRG00000002467) #37	ENSPMRG00000002463	ENSPMRG00000002460	ENSPMRG00000002457 #20	TRAM2 (ENSPMRG00000002403) #18	ENSPMRG00000002354 #20	PAQR8 (ENSPMRG00000002330) #21	ENSPMRG00000002325	ENSPMRG00000002318	MCM3 (ENSPMRG00000002305) #22	IL17F (ENSPMRG00000002301) #23	PKHD1 (ENSPMRG00000007352) #26	ENSPMRG00000007318	TFAP2B (ENSPMRG00000007290) #28	TFAP2D (ENSPMRG00000007272) #29	ENSPMRG00000007258 #36	ENSPMRG00000007239 #35	ENSPMRG00000007046 #36	ENSPMRG00000006997 #36	FAM161A (ENSPMRG00000006987)	CCT4 (ENSPMRG00000006964)	COMMD1 (ENSPMRG00000006951)	ENSPMRG00000006943	TMEM17 (ENSPMRG00000006917)	EHBP1 (ENSPMRG00000006897)
Argentine black and white tegu	MODERN SPECIES	54	RUNX2 (ENSSMRG00000006169)	SUPT3H (ENSSMRG00000006146)	CDC5L (ENSSMRG00000006101)	ENSSMRG00000006098	MMUT (ENSSMRG00000006094)	ENSSMRG00000006082	RHAG (ENSSMRG00000006066) #37	ENSSMRG00000006060 #36	ENSSMRG00000006058 #33	CRISP3 (ENSSMRG00000006050) #35	ENSSMRG00000006037 #33	ENSSMRG00000006016	TRAM2 (ENSSMRG00000006014) #18	EFHC1 (ENSSMRG00000005996) #20	ENSSMRG00000005995 #21	MCM3 (ENSSMRG00000005991) #22	IL17F (ENSSMRG00000005978) #23	ENSSMRG00000005977	TFAP2B (ENSSMRG00000005975) #28	TFAP2D (ENSSMRG00000005974) #29	ENSSMRG00000005927 #36	ENSSMRG00000005909 #36	ENSSMRG00000005739 #36	FAM161A (ENSSMRG00000005692)	CCT4 (ENSSMRG00000005614)	COMMD1 (ENSSMRG00000005611)	B3GNT2 (ENSSMRG00000005605)	ENSSMRG00000005599	TMEM17 (ENSSMRG00000005554)	EHBP1 (ENSSMRG00000005524)	OTX1 (ENSSMRG00000005510)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156406.b	ENSGT00940000179889.a	ENSGT00940000160171	ENSGT00390000010738	ENSGT00550000074922	ENSGT01100000263524.D	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510	ENSGT00950000182844.b.a #37	ENSGT00940000162362.b #33	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439.r.a #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Elapidae	ANCESTRAL SPECIES		ENSGT00550000074922	ENSGT00390000011892	ENSGT00390000005599	ENSGT00950000183133.f.h	ENSGT00940000162510.s.a.a.b	ENSGT00940000162510.s.a.b.b	ENSGT00940000162510.s.a.a.a.a.a	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a #37	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013 #35	ENSGT00940000156439.r.a.d #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Indian cobra	MODERN SPECIES		MMUT (ENSNNAG00000000438)	CENPQ (ENSNNAG00000000424)	GLYATL3 (ENSNNAG00000000413)	ENSNNAG00000000401	ENSNNAG00000000364	ENSNNAG00000000271	ENSNNAG00000000238	ENSNNAG00000000234	ENSNNAG00000000226	ENSNNAG00000014629	ENSNNAG00000014612	RHAG (ENSNNAG00000014592) #37	TRAM2 (ENSNNAG00000014579) #18	EFHC1 (ENSNNAG00000014556) #20	PAQR8 (ENSNNAG00000014541) #21	MCM3 (ENSNNAG00000014512) #22	IL17F (ENSNNAG00000014489) #23	PKHD1 (ENSNNAG00000014363) #26	TFAP2B (ENSNNAG00000014323) #28	ENSNNAG00000014311	ENSNNAG00000014300	ENSNNAG00000014282 #36	ENSNNAG00000014151 #36	FAM161A (ENSNNAG00000014113)	CCT4 (ENSNNAG00000014059)	ENSNNAG00000014050	ENSNNAG00000014035	B3GNT2 (ENSNNAG00000014031)	TMEM17 (ENSNNAG00000014018)	EHBP1 (ENSNNAG00000013729)	OTX1 (ENSNNAG00000013651)
Elapidae_a	ANCESTRAL SPECIES	6							ENSGT00940000162510.s.a.a.a.a.a.b	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a #37	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013.p #35	ENSGT00940000156439.r.a.d #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Acanthophiinae	ANCESTRAL SPECIES	8							ENSGT00940000162510.s.a.a.a.a.a.b	ENSGT00940000162510.s.a.a.a.b	ENSGT00940000162510.s.b	ENSGT00940000162510.t.a	ENSGT00940000162510.t.b	ENSGT00950000182844.b.a #37	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00940000160697 #26	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000162013.p #35	ENSGT00940000156439.r.a.d #36	ENSGT00940000157824	ENSGT00550000074956	ENSGT00390000012029	ENSGT00940000155345	ENSGT00940000153899.b.b	ENSGT00940000157597	ENSGT00940000161234	ENSGT00390000016551	ENSGT00530000063410.a
Eastern brown snake	MODERN SPECIES	56									ENSPTXG00000006002	ENSPTXG00000006003	ENSPTXG00000006444	ENSPTXG00000006447	ENSPTXG00000006448 #37	TRAM2 (ENSPTXG00000006451) #18	EFHC1 (ENSPTXG00000006452) #20	MCM3 (ENSPTXG00000006453) #22	IL17F (ENSPTXG00000006464) #23	TFAP2B (ENSPTXG00000006479) #28	TFAP2D (ENSPTXG00000006480) #29	ENSPTXG00000006481 #35	ENSPTXG00000006483	ENSPTXG00000006485 #36	ENSPTXG00000006487	ENSPTXG00000006489	CCT4 (ENSPTXG00000006490)	COMMD1 (ENSPTXG00000006517)	B3GNT2 (ENSPTXG00000006518)	TMEM17 (ENSPTXG00000006519)	EHBP1 (ENSPTXG00000006520)	OTX1 (ENSPTXG00000006521)	ENSPTXG00000006522
Mainland tiger snake	MODERN SPECIES	177								ENSNSUG00000003326	ENSNSUG00000003324	ENSNSUG00000003319	ENSNSUG00000003318	ENSNSUG00000003316 #37	TRAM2 (ENSNSUG00000003305) #18	EFHC1 (ENSNSUG00000003302) #20	PAQR8 (ENSNSUG00000003301) #21	MCM3 (ENSNSUG00000003293) #22	IL17F (ENSNSUG00000003284) #23	PKHD1 (ENSNSUG00000003277) #26	TFAP2B (ENSNSUG00000003274) #28	TFAP2D (ENSNSUG00000003267) #29	ENSNSUG00000003265
Blue-lipped sea krait	MODERN SPECIES	2560														EFHC1 (ENSLLTG00000001070) #20	PAQR8 (ENSLLTG00000001105) #21	MCM3 (ENSLLTG00000001151) #22
Lizard	MODERN SPECIES		MLPH (ENSACAG00000004551)	PRLH (ENSACAG00000020999)	RAB17 (ENSACAG00000004554)	ENSACAG00000004607	ENSACAG00000043473	ENSACAG00000036057	ENSACAG00000004735	COL6A2 (ENSACAG00000004843)	FTCD (ENSACAG00000004847)	SPATC1L (ENSACAG00000042410)	LSS (ENSACAG00000004914)	MCM3AP (ENSACAG00000004980)	YBEY (ENSACAG00000005066)	TRAM2 (ENSACAG00000005070) #18	EFHC1 (ENSACAG00000005118) #20	MCM3 (ENSACAG00000005146) #22	IL17F (ENSACAG00000005245) #23	TFAP2B (ENSACAG00000005251) #28	TFAP2D (ENSACAG00000005336) #29	ENSACAG00000005354 #36	CRISP3 (ENSACAG00000005469) #36	FAM161A (ENSACAG00000005568)	CCT4 (ENSACAG00000005569)	ENSACAG00000034625	COMMD1 (ENSACAG00000005706)	B3GNT2 (ENSACAG00000005727)	ENSACAG00000040766	ENSACAG00000037410	ENSACAG00000037825	EHBP1 (ENSACAG00000005744)	OTX1 (ENSACAG00000005818)
tuatara	MODERN SPECIES	779											RHAG (ENSSPUG00000006919) #37	ENSSPUG00000006910 #36	TRAM2 (ENSSPUG00000006859) #18	EFHC1 (ENSSPUG00000006661) #20	ENSSPUG00000006577	MCM3 (ENSSPUG00000006558) #22	ENSSPUG00000006537 #23	ENSSPUG00000006524	TNFRSF21 (ENSSPUG00000006510)	CD2AP (ENSSPUG00000006485)	ENSSPUG00000006443
Anura	ANCESTRAL SPECIES	37	ENSGT00390000018895.b	ENSGT00940000155718	ENSGT00940000165828	ENSGT00940000161371	ENSGT00940000163547	ENSGT00940000159693	ENSGT00940000159864	ENSGT00940000158349	ENSGT00940000153230.B	ENSGT00390000016034	ENSGT00940000158680	ENSGT01070000253766.A.a.a.b	ENSGT00510000046470.a.b #18	ENSGT00530000063528.A.a #20	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.g.b #23	ENSGT00940000156618.h #23	ENSGT00940000156618.g.a #23	ENSGT00940000160697 #26	ENSGT00900000143764	ENSGT00950000182848.c.b.b.b #28	ENSGT00950000182848.d #29	ENSGT00940000156439.f.a #36	ENSGT00950000182844.b.a #37	ENSGT00940000162510.g.b
Frog	MODERN SPECIES	5	pinx1 (ENSXETG00000000688)	ENSXETG00000043976	xkr6 (ENSXETG00000000686)	mtmr9 (ENSXETG00000000685)	ENSXETG00000000682	fam167a (ENSXETG00000039457)	blk (ENSXETG00000021626)	ENSXETG00000040921	gata4 (ENSXETG00000000673)	fdft1 (ENSXETG00000033587)	ctsb (ENSXETG00000000671)	xkr5 (ENSXETG00000042442)	tram2 (ENSXETG00000044336) #18	efhc1 (ENSXETG00000000659) #20	paqr8 (ENSXETG00000046634) #21	zmcm3 (ENSXETG00000021701) #22	ENSXETG00000046398 #23	ENSXETG00000043603 #23	ENSXETG00000042645 #23	ENSXETG00000021699 #23	ENSXETG00000026914 #23	ENSXETG00000037552	pkhd1 (ENSXETG00000021681) #26	ENSXETG00000035528	tfap2b (ENSXETG00000021674) #28	tfap2d (ENSXETG00000032997) #29	crisp2-like (ENSXETG00000010986) #36	ENSXETG00000031486	crispl (ENSXETG00000011148) #36	ENSXETG00000039459	crisp1.7 (ENSXETG00000011152) #36
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	8	CEBPD (ENSLLEG00000020717)	SPIDR (ENSLLEG00000020740)	ENSLLEG00000020944	ENSLLEG00000021255	ENSLLEG00000021488	DTNA (ENSLLEG00000021623)	ENSLLEG00000022993	NOL4 (ENSLLEG00000023036)	ENSLLEG00000023505	ASXL3 (ENSLLEG00000023522)	ENSLLEG00000023647	KLHL14 (ENSLLEG00000024189)	ENSLLEG00000024284	ENSLLEG00000024364	GAREM1 (ENSLLEG00000024387)	ENSLLEG00000024490 #22	ENSLLEG00000024739	ENSLLEG00000024904	ENSLLEG00000005699	ENSLLEG00000005946	ENSLLEG00000006001	RNF125 (ENSLLEG00000006191)	ENSLLEG00000006244	TRAPPC8 (ENSLLEG00000006292)	ENSLLEG00000006679	B4GALT6 (ENSLLEG00000006713)	ENSLLEG00000006768	DSG2 (ENSLLEG00000006964)	ENSLLEG00000007041	ENSLLEG00000007077	ENSLLEG00000007244
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000011512	ENSLLEG00000011464	ENSLLEG00000011443	ENSLLEG00000011423	ENSLLEG00000011408	ENSLLEG00000011383	CTSB (ENSLLEG00000011350)	ENSLLEG00000011320	ENSLLEG00000011229	ENSLLEG00000011181	TRAM2 (ENSLLEG00000011027) #18	EFHC1 (ENSLLEG00000010817) #20	ENSLLEG00000010782	PAQR8 (ENSLLEG00000010762) #21	ENSLLEG00000010723	MCM3 (ENSLLEG00000010258) #22	ENSLLEG00000010161 #23	ENSLLEG00000010127	ENSLLEG00000010078 #23	ENSLLEG00000010041 #23	ENSLLEG00000010009 #23	ENSLLEG00000009963 #23	ENSLLEG00000009874	ENSLLEG00000009562	ENSLLEG00000009504	ENSLLEG00000008822	NEIL2 (ENSLLEG00000008722)	ENSLLEG00000008601	BLK (ENSLLEG00000008485)	ENSLLEG00000008462	FAM167A (ENSLLEG00000008426)
Coelacanth	MODERN SPECIES	2151															PAQR8 (ENSLACG00000009123) #21	MCM3 (ENSLACG00000007689) #22	ENSLACG00000007297 #23	IL17F (ENSLACG00000007083) #23	RPL7L1 (ENSLACG00000006089)	SLC5A6 (ENSLACG00000004585)	ENSLACG00000002596
Actinopterygii	ANCESTRAL SPECIES	4	ENSGT00940000163032	ENSGT00390000014654	ENSGT00950000183117.b	ENSGT00940000153804.A	ENSGT00940000155086.A	ENSGT00940000166976	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a	ENSGT00940000159992	ENSGT00520000055578.a.a.d	ENSGT00940000166855	ENSGT00940000159556	ENSGT00940000166646	ENSGT00530000063834.e.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT00950000183111.b.a	ENSGT00950000182909.b.a.a.db	ENSGT00950000182909.b.a.a.cb	ENSGT00390000000568	ENSGT01100000263524.B.b.b
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	14	SNAI2 (ENSECRG00000004405)	ube2v2 (ENSECRG00000004380)	mcm4 (ENSECRG00000006775) ##22	PRKDC (ENSECRG00000006128)	cebpd (ENSECRG00000005879)	SPIDR (ENSECRG00000005855)	ENSECRG00000005839	mapre2 (ENSECRG00000005807)	dtna (ENSECRG00000005776)	NOL4 (ENSECRG00000005742)	ENSECRG00000005722	ASXL3 (ENSECRG00000005707)	KLHL14 (ENSECRG00000005688)	ENSECRG00000005678	garem (ENSECRG00000005664)	mcm3l (ENSECRG00000005647) #22	mep1ba (ENSECRG00000005606)	ENSECRG00000005578	ENSECRG00000005562	TRAPPC8 (ENSECRG00000005471)	rpl7 (ENSECRG00000005442)	rdh10b (ENSECRG00000005338)	stau2 (ENSECRG00000005284)	ube2wa (ENSECRG00000005250)	elocb (ENSECRG00000005216)	TMEM70 (ENSECRG00000005208)	jph1b (ENSECRG00000005198)	gdap1 (ENSECRG00000005190)	pi15a (ENSECRG00000005157)	crispld1b (ENSECRG00000005123)	hnf4g (ENSECRG00000005100)
Reedfish	MODERN SPECIES	11	rnf217 (ENSECRG00000005549)	ENSECRG00000005534	ENSECRG00000005523	nkain2 (ENSECRG00000005518)	ENSECRG00000005508	ENSECRG00000005498	ENSECRG00000005493	clvs2 (ENSECRG00000005478)	smpdl3a (ENSECRG00000005461)	fabp7b (ENSECRG00000005451)	pkib (ENSECRG00000005439)	serinc1 (ENSECRG00000005417)	hebp2 (ENSECRG00000005398)	KIF25 (ENSECRG00000005392)	AFDN (ENSECRG00000005331)	mcm3 (ENSECRG00000005255) #22	ENSECRG00000005236	ENSECRG00000005229	ENSECRG00000005221	stmn4 (ENSECRG00000005217)	gpn1 (ENSECRG00000005201)	emilin1a (ENSECRG00000004841)	khk (ENSECRG00000004749)	ENSECRG00000004736	ENSECRG00000004731	rpl7l1 (ENSECRG00000004713)	slc5a6b (ENSECRG00000004696)	TCF23 (ENSECRG00000004682)	preb (ENSECRG00000004671)	ABHD1 (ENSECRG00000004646)	ctsba (ENSECRG00000004619)
Neopterygii	ANCESTRAL SPECIES	138							ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a	ENSGT00940000155500	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C	ENSGT00940000157136.b	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618 #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183172.C	ENSGT01030000234633.A	ENSGT00390000007458	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000018900	ENSGT00940000163104	ENSGT00390000004799	ENSGT00390000005861	ENSGT01030000235230	ENSGT00980000199001	ENSGT00950000183142.a.b.a.b	ENSGT00940000156766
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	283																mcm3l (ENSLOCG00000012167) #22	mep1ba (ENSLOCG00000012175)	ENSLOCG00000012183	RNF138 (ENSLOCG00000012186)	TRAPPC8 (ENSLOCG00000012192)	opn7a (ENSLOCG00000012203)
Spotted gar	MODERN SPECIES	647	cdc42bpab (ENSLOCG00000016021)	lft2 (ENSLOCG00000016018)	tmem63a (ENSLOCG00000016012)	rsph9 (ENSLOCG00000016010)	mrps18a (ENSLOCG00000016008)	vegfab (ENSLOCG00000016005)	extl3 (ENSLOCG00000016002)	ints9 (ENSLOCG00000015999)	hmbox1a (ENSLOCG00000015994)	KIF13B (ENSLOCG00000015976)	elp3 (ENSLOCG00000015972)	si:ch211-63o20.7 (ENSLOCG00000015970)	pnocb (ENSLOCG00000015967)	znf395b (ENSLOCG00000015964)	paqr8 (ENSLOCG00000017993) #21	mcm3 (ENSLOCG00000015961) #22	il17a/f2 (ENSLOCG00000015959) #23	il17a/f1 (ENSLOCG00000015957) #23	stmn4 (ENSLOCG00000015955)	gpn1 (ENSLOCG00000015949)	emilin1a (ENSLOCG00000015947)	khk (ENSLOCG00000015943)	ankef1a (ENSLOCG00000015942)	snap25b (ENSLOCG00000015938)	wdr26b (ENSLOCG00000015931)	ADCY3 (ENSLOCG00000015927)	preb (ENSLOCG00000015926)	lyplal1 (ENSLOCG00000015924)	ENSLOCG00000015923	tgfb2 (ENSLOCG00000015921)	rrp15 (ENSLOCG00000015920)
Osteoglossocephalai	ANCESTRAL SPECIES	98	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000158137.c.a	ENSGT00950000183111.b.a.a	ENSGT00950000182909.b.a.a.cb	ENSGT00950000183102.A.b.a	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT01100000263524.B.b.b	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.b	ENSGT01030000234624.a	ENSGT00940000155981	ENSGT00940000156037.a.f	ENSGT00940000156453.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354
Osteoglossiformes	ANCESTRAL SPECIES	126	ENSGT00940000158622.h	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860 #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.a.e	ENSGT00940000156852	ENSGT00950000182843.a.a.a.b.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b.b	ENSGT01030000234517.H.b.a	ENSGT00940000156491.a.b
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	20	ENSPKIG00000008624	SLC22A23 (ENSPKIG00000008590)	DSP (ENSPKIG00000008536)	DSP (ENSPKIG00000008493)	ENSPKIG00000008447	ENSPKIG00000008426	igfbp3 (ENSPKIG00000008313)	igfbp1a (ENSPKIG00000008217)	adcy1a (ENSPKIG00000008108)	sirt5 (ENSPKIG00000008055)	ENSPKIG00000008041	ENSPKIG00000008026	tbc1d7 (ENSPKIG00000007972)	PHLPP1 (ENSPKIG00000007909)	si:ch211-191a24.4 (ENSPKIG00000007876)	mcm3l (ENSPKIG00000007826) #22	TRAPPC8 (ENSPKIG00000007667)	ENSPKIG00000007592	B4GALT5 (ENSPKIG00000007532)	ENSPKIG00000007492	ENSPKIG00000007457	ENSPKIG00000007391	ENSPKIG00000007329	ENSPKIG00000007312	ENSPKIG00000007260	ENSPKIG00000007148	ENSPKIG00000007093	ENSPKIG00000007066	ENSPKIG00000007054	maf1b (ENSPKIG00000007008)	ENSPKIG00000006974
P. kingsleyae	MODERN SPECIES	82	cpsf2 (ENSPKIG00000021453)	NDUFB1 (ENSPKIG00000021476)	riox1 (ENSPKIG00000021498)	CRIM1 (ENSPKIG00000021580)	ENSPKIG00000021696	extl3 (ENSPKIG00000021711)	ints9 (ENSPKIG00000021742)	HMBOX1 (ENSPKIG00000021795)	KIF13B (ENSPKIG00000021846)	ENSPKIG00000021882	elp3 (ENSPKIG00000021890)	si:ch211-63o20.7 (ENSPKIG00000021912)	pnocb (ENSPKIG00000021933)	znf395b (ENSPKIG00000021950)	paqr8 (ENSPKIG00000021982) #21	mcm3 (ENSPKIG00000021999) #22	il17a/f3 (ENSPKIG00000022047) #23	stmn4 (ENSPKIG00000022059)	EMILIN1 (ENSPKIG00000022077)	ankef1a (ENSPKIG00000022097)	snap25a (ENSPKIG00000022134)	cnstb (ENSPKIG00000022184)	KIF26B (ENSPKIG00000022242)	hnrnpub (ENSPKIG00000022332)	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	10	ripk1l (ENSSFOG00015013668)	BPHL (ENSSFOG00015032944)	ENSSFOG00015013649	ENSSFOG00015013633	SLC22A23 (ENSSFOG00015013601)	DSP (ENSSFOG00015013531)	TNS3 (ENSSFOG00015013361)	igfbp3 (ENSSFOG00015030365)	igfbp1a (ENSSFOG00015025197)	adcy1a (ENSSFOG00015013194)	sirt5 (ENSSFOG00015027400)	PHACTR1 (ENSSFOG00015013145)	tbc1d7 (ENSSFOG00015013112)	PHLPP1 (ENSSFOG00015011540)	si:ch211-191a24.4 (ENSSFOG00015011524)	mcm3l (ENSSFOG00015011464) #22	TRAPPC8 (ENSSFOG00015011261)	opn7a (ENSSFOG00015011229)	B4GALT5 (ENSSFOG00015026026)	ENSSFOG00015011178	ENSSFOG00015030217	ENSSFOG00015011027	ENSSFOG00015010975	cdh2 (ENSSFOG00015030474)	aqp4 (ENSSFOG00015010438)	KCTD1 (ENSSFOG00015025639)	TAF4B (ENSSFOG00015010259)	psma8 (ENSSFOG00015010234)	SS18 (ENSSFOG00015010184)	ZNF521 (ENSSFOG00015010128)	ENSSFOG00015024307
Asian bonytongue	MODERN SPECIES		TMEM121 (ENSSFOG00015002265)	RIN3 (ENSSFOG00015002243)	SLC24A4 (ENSSFOG00015002186)	cpsf2 (ENSSFOG00015002117)	NDUFB1 (ENSSFOG00015002101)	riox1 (ENSSFOG00015002091)	extl3 (ENSSFOG00015002047)	ints9 (ENSSFOG00015001945)	HMBOX1 (ENSSFOG00015026281)	KIF13B (ENSSFOG00015001708)	ENSSFOG00015001678	elp3 (ENSSFOG00015001622)	si:ch211-63o20.7 (ENSSFOG00015001614)	pnocb (ENSSFOG00015001572)	paqr8 (ENSSFOG00015001521) #21	mcm3 (ENSSFOG00015001433) #22	il17a/f3 (ENSSFOG00015001417) #23	stmn4 (ENSSFOG00015001386)	EMILIN1 (ENSSFOG00015001373)	ankef1a (ENSSFOG00015001355)	snap25a (ENSSFOG00015001305)	cnstb (ENSSFOG00015001287)	KIF26B (ENSSFOG00015001188)	hnrnpub (ENSSFOG00015001124)	ENSSFOG00015031684	ENSSFOG00015000984	cdc42bpab (ENSSFOG00015000828)	fzd3a (ENSSFOG00015000788)	fbxo16 (ENSSFOG00015000776)	nrbp1 (ENSSFOG00015000718)	esrrga (ENSSFOG00015000691)
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	87								ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Protacanthopterygii	ANCESTRAL SPECIES	30	ENSGT00940000166222	ENSGT00390000010872	ENSGT00940000162937.a.a	ENSGT00940000163866.a.b	ENSGT00940000162303.a.a	ENSGT00440000033640.h	ENSGT00940000156211.a.a	ENSGT00940000154573.db	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00950000183014.f.b.b.a.a	ENSGT00390000004681.a.a	ENSGT00390000003161	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	7	ENSELUG00000001984	exoc2 (ENSELUG00000002012)	foxq1b (ENSELUG00000001117)	ENSELUG00000002020	foxc1b (ENSELUG00000002021)	ENSELUG00000033999	gmds (ENSELUG00000002034)	MYLK4 (ENSELUG00000002040)	serpinb1 (ENSELUG00000002049)	cahz (ENSELUG00000002055)	ENSELUG00000002069	pycr3 (ENSELUG00000002076)	bmb (ENSELUG00000002084)	GFUS (ENSELUG00000002100)	ARHGAP39 (ENSELUG00000002107)	mcm3l (ENSELUG00000002112) #22	mep1ba (ENSELUG00000000058)	ENSELUG00000002121	TRAPPC8 (ENSELUG00000002149)	ENSELUG00000034701	opn7a (ENSELUG00000002161)	b4galt6 (ENSELUG00000002166)	ttr (ENSELUG00000000062)	ENSELUG00000002186	dsc2l (ENSELUG00000002197)	ENSELUG00000002204	cdh2 (ENSELUG00000002228)	aqp4 (ENSELUG00000002244)	ENSELUG00000002251	TAF4B (ENSELUG00000002260)	psma8 (ENSELUG00000002277)
Northern pike	MODERN SPECIES	17	GAREM2 (ENSELUG00000024865)	hadhb (ENSELUG00000008448)	tfap2d (ENSELUG00000008515) #29	vsx2 (ENSELUG00000008538)	ENSELUG00000008557	abcd4 (ENSELUG00000008610)	HMBOX1 (ENSELUG00000008628)	KIF13B (ENSELUG00000008682)	elp3 (ENSELUG00000008716)	si:ch211-63o20.7 (ENSELUG00000027051)	ENSELUG00000008760	ENSELUG00000008786	pnocb (ENSELUG00000008865)	znf395b (ENSELUG00000008831)	paqr8 (ENSELUG00000008884) #21	mcm3 (ENSELUG00000009016) #22	il17a/f3 (ENSELUG00000009048) #23	stmn4 (ENSELUG00000009061)	emilin1a (ENSELUG00000009133)	vrtn (ENSELUG00000009185)	ENSELUG00000009229	ENSELUG00000009282	rd3 (ENSELUG00000009302)	rhag (ENSELUG00000009333) #37	gxylt1b (ENSELUG00000009378)	pdzrn4 (ENSELUG00000009410)	cntn1b (ENSELUG00000009490)	nrcama (ENSELUG00000009785)	PNPLA8 (ENSELUG00000009898)	ENSELUG00000009924	avpr2l (ENSELUG00000009942)
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	856													ENSGT00390000013141.c.b	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000011890.l	ENSGT00390000016097.c.c.a	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000016097.c.d	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b	ENSGT00940000157848.a.b.c
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000070180	ENSOMYG00000064812	ENSOMYG00000054627	YLPM1 (ENSOMYG00000073604)	ENSOMYG00000002458	DLST (ENSOMYG00000069400)	ENSOMYG00000002517	ENSOMYG00000002541	ENSOMYG00000002565	ENSOMYG00000048281	ENSOMYG00000077685	ENSOMYG00000074150	pnocb (ENSOMYG00000002654)	znf395b (ENSOMYG00000002692)	ENSOMYG00000075400	mcm3 (ENSOMYG00000069397) #22	ENSOMYG00000003616	stmn4 (ENSOMYG00000003536)	emilin1a (ENSOMYG00000068144)	ENSOMYG00000059677	vrtn (ENSOMYG00000003729)	ENSOMYG00000003480	ENSOMYG00000068295	ENSOMYG00000058802	dll4 (ENSOMYG00000064805)	vps18 (ENSOMYG00000002855)	rhov (ENSOMYG00000073208)	ENSOMYG00000002990	ZFYVE1 (ENSOMYG00000003004)	wdr21 (ENSOMYG00000003033)	dpf3 (ENSOMYG00000003045)
Oncorhynchus_a	ANCESTRAL SPECIES	81	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.a.a	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.b	ENSGT00940000157624.a.f	ENSGT00390000016097.c.d	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000157159.f.d	ENSGT01040000240385.A.b.b.a.a.b.a	ENSGT00940000155944.f.b.b.b	ENSGT00940000157848.a.b.c
Chinook salmon	MODERN SPECIES	29			ENSOTSG00005018650	ENSOTSG00005018652	ENSOTSG00005018656	ENSOTSG00005018665	znf513a (ENSOTSG00005018668)	SNX17 (ENSOTSG00005018673)	ENSOTSG00005018674	atraid (ENSOTSG00005018678)	ENSOTSG00005018681	ENSOTSG00005018683	xkr6b (ENSOTSG00005018684)	mtmr9 (ENSOTSG00005018744)	ENSOTSG00005018747	mcm3 (ENSOTSG00005018750) #22	ENSOTSG00005018752 #23	dll4 (ENSOTSG00005000473)	vps18 (ENSOTSG00005000478)	rhov (ENSOTSG00005000482)	ENSOTSG00005000485	ENSOTSG00005000490	SYNDIG1L (ENSOTSG00005000495)	ENSOTSG00005000496	ENSOTSG00005000497	gpr176 (ENSOTSG00005000499)	THBS1 (ENSOTSG00005000501)	katnbl1 (ENSOTSG00005000502)	emc7b (ENSOTSG00005000504)	chrm5b (ENSOTSG00005000506)	ENSOTSG00005000508
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000159276.g	ENSGT00940000164930.b.d	ENSGT00940000155693.a.a.c.a	ENSGT00940000159745.c.b	ENSGT01030000234625.B.d.c.b.d	ENSGT00940000155747.g.b.b	ENSGT00940000153433.A.e.f	ENSGT00440000039837.u.a.b	ENSGT00940000154790.b.a.a.a	ENSGT00930000151014.r.d.b	ENSGT00940000157776.c.a.d	ENSGT00940000154928.c.a.b.b	ENSGT00940000155500.f.e	ENSGT00950000183149.C.b.a	ENSGT00940000157136.b.g	ENSGT01050000244824.B.m.a #22	ENSGT00940000156618.c.a #23	ENSGT01100000266732	ENSGT01030000234597.a.b.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00390000007874.c	ENSGT00950000183147.A.a.g.b.c	ENSGT00940000167177.c.a	ENSGT00940000153635.B.c.a.a	ENSGT00940000157624.a.f	ENSGT00390000011890.l	ENSGT00390000016097.c.c.a	ENSGT00940000164083	ENSGT00940000159153.e.a	ENSGT00940000155070.b	ENSGT00940000157159.f.d
Atlantic salmon	MODERN SPECIES	6	FLVCR2 (ENSSSAG00000050878)	ENSSSAG00000111561	ENSSSAG00000046852	YLPM1 (ENSSSAG00000046863)	ENSSSAG00000102016	ENSSSAG00000085263	DLST (ENSSSAG00000050787)	ENSSSAG00000114459	ENSSSAG00000087627	ENSSSAG00000110290	ENSSSAG00000047064	ELP3 (ENSSSAG00000111667)	ENSSSAG00000119832	pnocb (ENSSSAG00000082859)	znf395b (ENSSSAG00000055437)	mcm3 (ENSSSAG00000055449) #22	stmn4 (ENSSSAG00000046831)	il17a/f3 (ENSSSAG00000056094) #23	ENSSSAG00000093523	ENSSSAG00000090511	emilin1a (ENSSSAG00000066717)	vrtn (ENSSSAG00000113477)	ENSSSAG00000107443	dll4 (ENSSSAG00000055522)	vps18 (ENSSSAG00000056372)	rhov (ENSSSAG00000118918)	pigh (ENSSSAG00000057756)	ZFYVE1 (ENSSSAG00000057772)	dcaf4 (ENSSSAG00000057830)	dpf3 (ENSSSAG00000039971)	ENSSSAG00000057549
Huchen	MODERN SPECIES	4168										vsx2 (ENSHHUG00000037834)	HMBOX1 (ENSHHUG00000037833)	ENSHHUG00000037775	pnocb (ENSHHUG00000037773)	znf395b (ENSHHUG00000037765)	ENSHHUG00000037764	mcm3 (ENSHHUG00000037738) #22
Salmoninae	ANCESTRAL SPECIES	672					ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT01100000263491.a.b.a.a.a.b.a.n	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000154790.b.a.a.b	ENSGT00930000151014.r.c	ENSGT00940000154297.A.g.b	ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000155621.wc	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a	ENSGT00390000007874.d	ENSGT01100000265031	ENSGT00950000183147.A.a.g.b.d	ENSGT00940000167177.c.b	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B.d	ENSGT00940000157624.a.e	ENSGT00390000011890.k	ENSGT00390000016097.c.c.b	ENSGT00940000159153.e.b	ENSGT00940000157159.f.c	ENSGT00940000155944.f.b.a.a	ENSGT00940000157848.a.b.d
Salmo	ANCESTRAL SPECIES	12	ENSGT00930000151014.r.c	ENSGT00940000154297.A.g.b	ENSGT00940000157776.c.a.c	ENSGT00940000165253	ENSGT00950000182955.a.a.b	ENSGT00940000155621.wc	ENSGT00940000154928.c.a.b.a	ENSGT00940000155500.f.f.d	ENSGT00940000155500.f.f.c	ENSGT00390000013141.d	ENSGT00940000166937	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.a.b	ENSGT00950000183149.C.b.b	ENSGT00940000157136.b.h	ENSGT00940000159860.e #21	ENSGT01050000244824.B.m.b #22	ENSGT01030000234597.a.b.a.b.a.a	ENSGT01060000253605	ENSGT00390000007874.d	ENSGT01100000265031	ENSGT00950000183147.A.a.g.b.d	ENSGT00940000167177.c.b	ENSGT00390000003855.b.e.b	ENSGT00900000141110	ENSGT00940000153635.B.d	ENSGT00940000157624.a.e	ENSGT00390000011890.k	ENSGT00390000016097.c.c.b	ENSGT00940000159153.e.b	ENSGT00940000157159.f.c	ENSGT00940000155944.f.b.a.a
Atlantic salmon	MODERN SPECIES	25	DLST (ENSSSAG00000103763)	ENSSSAG00000050768	ENSSSAG00000050757	ENSSSAG00000050699	ENSSSAG00000062923	ENSSSAG00000050666	ENSSSAG00000109642	ENSSSAG00000050640	ENSSSAG00000044344	elp3 (ENSSSAG00000043627)	si:ch211-63o20.7 (ENSSSAG00000043610)	ENSSSAG00000117071	pnocb (ENSSSAG00000115566)	znf395b (ENSSSAG00000043583)	paqr8 (ENSSSAG00000106493) #21	mcm3 (ENSSSAG00000043532) #22	ENSSSAG00000043476	ENSSSAG00000095104	stmn4 (ENSSSAG00000092698)	ENSSSAG00000103833	vrtn (ENSSSAG00000043527)	ENSSSAG00000108907	syndig1l (ENSSSAG00000037837)	ENSSSAG00000082736	dll4 (ENSSSAG00000043356)	chac1 (ENSSSAG00000043336)	ino80 (ENSSSAG00000042852)	vps18 (ENSSSAG00000042597)	rhov (ENSSSAG00000112030)	pigh (ENSSSAG00000042530)	ENSSSAG00000091400
Huchen	MODERN SPECIES	3078													NUAK1 (ENSHHUG00000024376)	ENSHHUG00000024383	paqr8 (ENSHHUG00000024385) #21	mcm3 (ENSHHUG00000024391) #22	stmn4 (ENSHHUG00000024654)
Salmoninae	ANCESTRAL SPECIES	15										ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568.m	ENSGT00940000158019.h.a.a	ENSGT01050000245154	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db.d	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00970000197999	ENSGT00390000000568.n	ENSGT00940000158019.h.a.b	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00510000049120.l.b	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000167364.d	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT01060000252363	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00970000197999	ENSGT00390000000568.n	ENSGT00940000158019.h.a.b	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a	ENSGT00940000156897	ENSGT00950000182993.B.a.d.a
Coho salmon	MODERN SPECIES	4	ENSOKIG00005029169	ENSOKIG00005029186	BPHL (ENSOKIG00005029195)	ENSOKIG00005029205	exoc2 (ENSOKIG00005029268)	foxq1b (ENSOKIG00005029424)	ENSOKIG00005029436	foxc1b (ENSOKIG00005029445)	gmds (ENSOKIG00005029460)	MYLK4 (ENSOKIG00005029507)	SERPINB1 (ENSOKIG00005029582)	ENSOKIG00005029601	pycr3 (ENSOKIG00005029624)	bmb (ENSOKIG00005029642)	GFUS (ENSOKIG00005029673)	mcm3l (ENSOKIG00005030023) #22	mep1ba (ENSOKIG00005029383)	ENSOKIG00005029429	TRAPPC8 (ENSOKIG00005029499)	b4galt6 (ENSOKIG00005029921)	ENSOKIG00005029986	ENSOKIG00005030011	ENSOKIG00005030102	ENSOKIG00005030210	cdh2 (ENSOKIG00005030494)	ENSOKIG00005033160	ENSOKIG00005033184	ENSOKIG00005033194	ENSOKIG00005033215	psma8 (ENSOKIG00005033272)	rad54l (ENSOKIG00005033381)
Chinook salmon	MODERN SPECIES	29	DSP (ENSOTSG00005014075)	SLC22A23 (ENSOTSG00005014063)	ENSOTSG00005014061	ENSOTSG00005014059	BPHL (ENSOTSG00005014056)	ENSOTSG00005014054	exoc2 (ENSOTSG00005013998)	ENSOTSG00005013993	foxc1b (ENSOTSG00005013992)	gmds (ENSOTSG00005013991)	SERPINB1 (ENSOTSG00005013989)	ENSOTSG00005013988	pycr3 (ENSOTSG00005013987)	bmb (ENSOTSG00005013986)	ENSOTSG00005013978	mcm3l (ENSOTSG00005011938) #22	mep1ba (ENSOTSG00005011933)	ENSOTSG00005011932	TRAPPC8 (ENSOTSG00005011769)	b4galt6 (ENSOTSG00005011729)	ttr (ENSOTSG00005011725)	ENSOTSG00005011720	ENSOTSG00005011717	dsc2l (ENSOTSG00005011714)	cdh2 (ENSOTSG00005011689)	aqp4 (ENSOTSG00005011686)	ENSOTSG00005011685	ENSOTSG00005011684	psma8 (ENSOTSG00005011680)	rad54l (ENSOTSG00005011427)	st3gal3a (ENSOTSG00005011424)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000076665	ENSOMYG00000071598	ENSOMYG00000034883	exoc2 (ENSOMYG00000034717)	foxq1b (ENSOMYG00000075977)	ENSOMYG00000034595	foxc1b (ENSOMYG00000034587)	ENSOMYG00000067598	ENSOMYG00000034537	ENSOMYG00000034489	ENSOMYG00000057579	pycr3 (ENSOMYG00000034461)	ENSOMYG00000034442	ENSOMYG00000034413	ENSOMYG00000057621	mcm3l (ENSOMYG00000033322) #22	mep1ba (ENSOMYG00000033033)	ENSOMYG00000033012	ENSOMYG00000072644	ENSOMYG00000043268	ENSOMYG00000069389	ENSOMYG00000032386	ENSOMYG00000056633	ENSOMYG00000067818	ENSOMYG00000032203	ttr (ENSOMYG00000032166)	ENSOMYG00000032154	ENSOMYG00000032128	ENSOMYG00000032104	ENSOMYG00000063226	cdh2 (ENSOMYG00000032078)
Salmo	ANCESTRAL SPECIES	14	ENSGT01100000263520.a.a.a.a.b.b.a.a.b.e.b	ENSGT00390000004746	ENSGT00940000166222.b	ENSGT00390000010872.m	ENSGT00940000162937.a.a.a	ENSGT00940000163866.a.b.a	ENSGT00940000162303.a.a.c	ENSGT00440000033640.h.d	ENSGT00940000156211.a.a.b	ENSGT00940000154573.db.a	ENSGT00950000183014.f.b.b.a.a.g	ENSGT00950000183044.a.b	ENSGT00740000115898	ENSGT00390000004681.a.a.g	ENSGT00390000003161.d	ENSGT01050000244824.B.n #22	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db.d	ENSGT00390000000568.n	ENSGT01100000263524.B.b.b.n	ENSGT00940000158019.g	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b	ENSGT01030000234624.a.t	ENSGT00940000155981.h.e	ENSGT00940000156037.a.e.d	ENSGT00940000156453.b.a	ENSGT00390000011620.a.a.a	ENSGT00940000160354.j.a.a	ENSGT00940000156897
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000089628	ENSSSAG00000009083	exoc2 (ENSSSAG00000007450)	foxq1b (ENSSSAG00000118532)	ENSSSAG00000007409	foxc1b (ENSSSAG00000113293)	gmds (ENSSSAG00000007080)	MYLK4 (ENSSSAG00000007045)	ENSSSAG00000007035	ENSSSAG00000007023	pycrl (ENSSSAG00000007006)	ENSSSAG00000006996	ENSSSAG00000080945	ENSSSAG00000107918	ENSSSAG00000080932	mcm3l (ENSSSAG00000080838) #22	mep1ba (ENSSSAG00000080805)	ENSSSAG00000120970	ENSSSAG00000080164	opn7a (ENSSSAG00000080081)	b4galt6 (ENSSSAG00000079954)	ttr (ENSSSAG00000118339)	ENSSSAG00000079927	ENSSSAG00000079910	ENSSSAG00000079892	cdh2 (ENSSSAG00000079280)	AQP4 (ENSSSAG00000079222)	ENSSSAG00000079220	TAF4B (ENSSSAG00000079213)	PSMA8 (ENSSSAG00000079190)	rad54l (ENSSSAG00000079143)
River trout	MODERN SPECIES	14	ENSSTUG00000012033	BPHL (ENSSTUG00000012027)	ENSSTUG00000012003	exoc2 (ENSSTUG00000011842)	foxq1b (ENSSTUG00000011830)	ENSSTUG00000011826	foxc1b (ENSSTUG00000011822)	ENSSTUG00000011810	MYLK4 (ENSSTUG00000011780)	SERPINB1 (ENSSTUG00000011763)	ENSSTUG00000011722	pycr3 (ENSSTUG00000011685)	bmb (ENSSTUG00000011664)	GFUS (ENSSTUG00000011614)	ARHGAP39 (ENSSTUG00000011571)	mcm3l (ENSSTUG00000011263) #22	mep1ba (ENSSTUG00000011231)	ENSSTUG00000011223	TRAPPC8 (ENSSTUG00000011036)	opn7a (ENSSTUG00000010998)	b4galt6 (ENSSTUG00000010928)	ttr (ENSSTUG00000010910)	ENSSTUG00000010898	ENSSTUG00000010844	ENSSTUG00000010842	dsc2l (ENSSTUG00000010779)	cdh2 (ENSSTUG00000007612)	aqp4 (ENSSTUG00000007478)	ENSSTUG00000007457	TAF4B (ENSSTUG00000007439)	psma8 (ENSSTUG00000007376)
Huchen	MODERN SPECIES	944											SERPINB1 (ENSHHUG00000008952)	ENSHHUG00000008916	pycr3 (ENSHHUG00000008884)	bmb (ENSHHUG00000008849)	ARHGAP39 (ENSHHUG00000008817)	mcm3l (ENSHHUG00000008671) #22	mep1ba (ENSHHUG00000008609)	ENSHHUG00000008603	TRAPPC8 (ENSHHUG00000008544)	opn7a (ENSHHUG00000008519)	b4galt6 (ENSHHUG00000008434)	ttr (ENSHHUG00000008424)	ENSHHUG00000008407	ENSHHUG00000008399	dsc2l (ENSHHUG00000008344)
Acanthomorphata	ANCESTRAL SPECIES	35								ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00390000000568	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000156852.c.f	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Tiger tail seahorse	MODERN SPECIES	500										KIF13B (ENSHCOG00000004099)	elp3 (ENSHCOG00000004054)	si:ch211-63o20.7 (ENSHCOG00000004037)	pnocb (ENSHCOG00000004019)	znf395b (ENSHCOG00000004001)	paqr8 (ENSHCOG00000003989) #21	mcm3 (ENSHCOG00000003973) #22	stmn4 (ENSHCOG00000003923)	emilin1a (ENSHCOG00000003905)	ankef1a (ENSHCOG00000003891)	snap25a (ENSHCOG00000003838)	sccpdhb (ENSHCOG00000003809)	ENSHCOG00000003795	fzd3a (ENSHCOG00000003769)	cdc42bpab (ENSHCOG00000003743)	lft1 (ENSHCOG00000020138)	hnrnpub (ENSHCOG00000020091)	fbxo16 (ENSHCOG00000020077)	fam49a (ENSHCOG00000020000)	vsnl1a (ENSHCOG00000000609)	sf3b6 (ENSHCOG00000019962)	tdrd6 (ENSHCOG00000019950)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Pleuronectoidei	ANCESTRAL SPECIES	46	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00950000183149.C.b	ENSGT00940000166937	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021
Tongue sole	MODERN SPECIES	24							TLR5 (ENSCSEG00000010461)	disp1 (ENSCSEG00000010473)	HMBOX1 (ENSCSEG00000010512)	KIF13B (ENSCSEG00000010536)	elp3 (ENSCSEG00000010569)	si:ch211-63o20.7 (ENSCSEG00000010600)	ENSCSEG00000010612	znf395b (ENSCSEG00000010616)	paqr8 (ENSCSEG00000010624) #21	mcm3 (ENSCSEG00000010629) #22	il17a/f3 (ENSCSEG00000010649) #23	stmn4 (ENSCSEG00000010659)	emilin1a (ENSCSEG00000010674)	ankef1a (ENSCSEG00000010701)	snap25a (ENSCSEG00000010748)	cnstb (ENSCSEG00000010773)	ENSCSEG00000010789	hnrnpub (ENSCSEG00000010804)	lft1 (ENSCSEG00000010820)	cdc42bpab (ENSCSEG00000010828)	fzd3a (ENSCSEG00000010870)	fbxo16 (ENSCSEG00000010900)
Turbot	MODERN SPECIES	12	mep1a.1 (ENSSMAG00000002640)	ENSSMAG00000002672	brox (ENSSMAG00000002686)	ENSSMAG00000002755	ENSSMAG00000022622	ENSSMAG00000002760	tlr5-b (ENSSMAG00000002774)	disp1 (ENSSMAG00000002808)	ENSSMAG00000002835	ENSSMAG00000002902	ELP3 (ENSSMAG00000002962)	pnocb (ENSSMAG00000003062)	si:ch211-63o20.7 (ENSSMAG00000003079)	znf395b (ENSSMAG00000003089)	paqr8 (ENSSMAG00000003117) #21	mcm3 (ENSSMAG00000003130) #22	ENSSMAG00000003245	stmn4 (ENSSMAG00000037598)	emilin1a (ENSSMAG00000003273)	ankef1a (ENSSMAG00000003325)	snap25a (ENSSMAG00000003362)	sccpdhb (ENSSMAG00000003507)	cnstb (ENSSMAG00000003574)	ENSSMAG00000003590	hnrnpub (ENSSMAG00000003607)	lft1 (ENSSMAG00000003629)	cdc42bpab (ENSSMAG00000003667)	ENSSMAG00000026000	fzd3a (ENSSMAG00000003731)	fbxo16 (ENSSMAG00000003762)	ENSSMAG00000003785
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000159678	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Seriola	ANCESTRAL SPECIES	4	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917.b	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT00390000002693	ENSGT00490000043329.a.b.g.b	ENSGT01030000234527.A.a.a.b.b	ENSGT00940000155459.x.a	ENSGT00940000153897.b.b	ENSGT00940000162464.r	ENSGT00940000153739.a.b.s	ENSGT00940000156975	ENSGT00940000157684	ENSGT00390000004803	ENSGT00950000183032.B.b.b	ENSGT00940000165711.a.a	ENSGT00940000159155
Yellowtail amberjack	MODERN SPECIES	2936	mep1a.1 (ENSSLDG00000019576)	ENSSLDG00000019596	brox (ENSSLDG00000019611)	ENSSLDG00000019646	ENSSLDG00000019662	ENSSLDG00000019760	disp1 (ENSSLDG00000019770)	HMBOX1 (ENSSLDG00000019781)	KIF13B (ENSSLDG00000019810)	ENSSLDG00000019861	elp3 (ENSSLDG00000019877)	si:ch211-63o20.7 (ENSSLDG00000019915)	pnocb (ENSSLDG00000019931)	znf395b (ENSSLDG00000019938)	paqr8 (ENSSLDG00000019955) #21	mcm3 (ENSSLDG00000019971) #22	il17a/f3 (ENSSLDG00000020022) #23	stmn4 (ENSSLDG00000020032)	tmem214 (ENSSLDG00000020045)	mapre3b (ENSSLDG00000020081)	dpysl5b (ENSSLDG00000020131)	dnmt3aa (ENSSLDG00000020176)	ENSSLDG00000020301	ENSSLDG00000020328	KIF3C (ENSSLDG00000020350)	rab10 (ENSSLDG00000020361)	lats1 (ENSSLDG00000020377)	nup43 (ENSSLDG00000020406)	pcmt (ENSSLDG00000020446)	ENSSLDG00000020473	lrp11 (ENSSLDG00000020480)
Greater amberjack	MODERN SPECIES	10	mep1a.1 (ENSSDUG00000008272)	ENSSDUG00000008262	brox (ENSSDUG00000008235)	ENSSDUG00000008228	ENSSDUG00000008219	ENSSDUG00000008205	disp1 (ENSSDUG00000008180)	HMBOX1 (ENSSDUG00000008155)	KIF13B (ENSSDUG00000008074)	ENSSDUG00000008063	elp3 (ENSSDUG00000008034)	si:ch211-63o20.7 (ENSSDUG00000008025)	pnocb (ENSSDUG00000008014)	znf395b (ENSSDUG00000007991)	paqr8 (ENSSDUG00000007985) #21	mcm3 (ENSSDUG00000007923) #22	il17a/f3 (ENSSDUG00000007890) #23	stmn4 (ENSSDUG00000007867)	tmem214 (ENSSDUG00000007836)	mapre3b (ENSSDUG00000007781)	dpysl5b (ENSSDUG00000007700)	dnmt3aa (ENSSDUG00000007664)	dtnba (ENSSDUG00000007553)	ENSSDUG00000007522	KIF3C (ENSSDUG00000007492)	rab10 (ENSSDUG00000007478)	lats1 (ENSSDUG00000007453)	nup43 (ENSSDUG00000007426)	pcmt (ENSSDUG00000007397)	lrp11 (ENSSDUG00000007384)	map3k5 (ENSSDUG00000007290)
Barramundi perch	MODERN SPECIES	126	ENSLCAG00010006384	mep1a.2 (ENSLCAG00010006371)	mep1a.1 (ENSLCAG00010006360)	ENSLCAG00010006353	brox (ENSLCAG00010006344)	ENSLCAG00010006301	ENSLCAG00010006278	disp1 (ENSLCAG00010006255)	HMBOX1 (ENSLCAG00010006244)	KIF13B (ENSLCAG00010005696)	elp3 (ENSLCAG00010005534)	si:ch211-63o20.7 (ENSLCAG00010005523)	pnocb (ENSLCAG00010005519)	znf395b (ENSLCAG00010005513)	paqr8 (ENSLCAG00010005512) #21	mcm3 (ENSLCAG00010005468) #22	ENSLCAG00010005449	stmn4 (ENSLCAG00010005448)	emilin1a (ENSLCAG00010005443)	ankef1a (ENSLCAG00010005442)	snap25a (ENSLCAG00010005413)	sccpdhb (ENSLCAG00010005391)	cnstb (ENSLCAG00010005375)	ENSLCAG00010005369	hnrnpub (ENSLCAG00010005315)	lft1 (ENSLCAG00010005297)	cdc42bpab (ENSLCAG00010004587)	fzd3a (ENSLCAG00010004464)	fbxo16 (ENSLCAG00010004458)	fam49a (ENSLCAG00010004431)	vsnl1a (ENSLCAG00010004412)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Climbing perch	MODERN SPECIES	15	mep1a.1 (ENSATEG00000015405)	ENSATEG00000025480	brox (ENSATEG00000015446)	ENSATEG00000015508	ENSATEG00000015523	ENSATEG00000029292	ENSATEG00000015550	disp1 (ENSATEG00000015562)	ENSATEG00000015579	ENSATEG00000015673	elp3 (ENSATEG00000015813)	si:ch211-63o20.7 (ENSATEG00000015842)	pnocb (ENSATEG00000027895)	znf395b (ENSATEG00000015873)	paqr8 (ENSATEG00000015880) #21	mcm3 (ENSATEG00000015894) #22	stmn4 (ENSATEG00000027591)	ENSATEG00000015923	emilin1a (ENSATEG00000015971)	ankef1a (ENSATEG00000015998)	snap25a (ENSATEG00000016086)	cnstb (ENSATEG00000016109)	ENSATEG00000016123	ENSATEG00000027762	hnrnpub (ENSATEG00000016178)	lft1 (ENSATEG00000016192)	cdc42bpab (ENSATEG00000016212)	fzd3a (ENSATEG00000016313)	fbxo16 (ENSATEG00000016459)	ENSATEG00000016512	VSNL1 (ENSATEG00000029333)
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000007770	ENSBSLG00000007788	brox (ENSBSLG00000007828)	ENSBSLG00000007897	ENSBSLG00000007905	ENSBSLG00000007916	TLR5 (ENSBSLG00000007927)	disp1 (ENSBSLG00000007951)	HMBOX1 (ENSBSLG00000007971)	KIF13B (ENSBSLG00000008070)	elp3 (ENSBSLG00000009675)	si:ch211-63o20.7 (ENSBSLG00000010588)	pnocb (ENSBSLG00000010611)	znf395b (ENSBSLG00000010635)	paqr8 (ENSBSLG00000010652) #21	mcm3 (ENSBSLG00000010778) #22	il17a/f3 (ENSBSLG00000011580) #23	stmn4 (ENSBSLG00000011614)	ENSBSLG00000011653	ENSBSLG00000011717	ENSBSLG00000011844	ENSBSLG00000011894	ENSBSLG00000011863	emilin1a (ENSBSLG00000011916)	ankef1a (ENSBSLG00000011931)	snap25a (ENSBSLG00000011993)	cnstb (ENSBSLG00000012126)	ENSBSLG00000012187	hnrnpub (ENSBSLG00000013195)	lft1 (ENSBSLG00000013468)	cdc42bpab (ENSBSLG00000013848)
Zig-zag eel	MODERN SPECIES	16	mep1a.1 (ENSMAMG00000006249)	ENSMAMG00000006266	brox (ENSMAMG00000006277)	ENSMAMG00000006311	ENSMAMG00000006318	ENSMAMG00000024460	ENSMAMG00000006340	disp1 (ENSMAMG00000006373)	ENSMAMG00000006435	ENSMAMG00000006450	elp3 (ENSMAMG00000006874)	si:ch211-63o20.7 (ENSMAMG00000006887)	pnocb (ENSMAMG00000006903)	znf395b (ENSMAMG00000006924)	paqr8 (ENSMAMG00000006934) #21	mcm3 (ENSMAMG00000006953) #22	ENSMAMG00000007001	stmn4 (ENSMAMG00000007012)	ENSMAMG00000027512	emilin1a (ENSMAMG00000007042)	ankef1a (ENSMAMG00000007059)	snap25a (ENSMAMG00000007092)	cnstb (ENSMAMG00000007139)	hnrnpub (ENSMAMG00000007196)	lft1 (ENSMAMG00000007252)	cdc42bpab (ENSMAMG00000007328)	ENSMAMG00000025640	fzd3a (ENSMAMG00000007585)	fbxo16 (ENSMAMG00000028207)	ENSMAMG00000026352	VSNL1 (ENSMAMG00000024490)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Tetraodontidae	ANCESTRAL SPECIES	50					ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000170226	ENSGT00950000183111.a.a	ENSGT00950000183111.a.b	ENSGT00940000154603.A.f.b	ENSGT00940000154603.B.l	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.b	ENSGT00940000154603.B.k	ENSGT00940000156212	ENSGT00940000157566
Tetraodon	MODERN SPECIES	5	exoc8 (ENSTNIG00000019159)	TRIM67 (ENSTNIG00000019160)	GNPAT (ENSTNIG00000019161)	ENSTNIG00000019162	scara5 (ENSTNIG00000019163)	pbk (ENSTNIG00000019164)	esco2 (ENSTNIG00000019165)	ccdc25 (ENSTNIG00000019166)	brox (ENSTNIG00000019167)	KIF13B (ENSTNIG00000019168)	elp3 (ENSTNIG00000019169)	si:ch211-63o20.7 (ENSTNIG00000019170)	pnocb (ENSTNIG00000019171)	znf395b (ENSTNIG00000019172)	paqr8 (ENSTNIG00000001524) #21	mcm3 (ENSTNIG00000019173) #22	stmn4 (ENSTNIG00000019174)	emilin1a (ENSTNIG00000019175)	ankef1a (ENSTNIG00000019176)	mep1a.1 (ENSTNIG00000019177)	ENSTNIG00000019178	TAAR1 (ENSTNIG00000001506)	TAAR1 (ENSTNIG00000001360)	TAAR1 (ENSTNIG00000000579)	TAAR1 (ENSTNIG00000001657)	TAAR1 (ENSTNIG00000001335)	TAAR1 (ENSTNIG00000019179)	ENSTNIG00000001411	tnfrsf21 (ENSTNIG00000019180)	cd2ap (ENSTNIG00000019181)	ENSTNIG00000000684
Fugu	MODERN SPECIES	7	ENSTRUG00000029350	brox (ENSTRUG00000004871)	ENSTRUG00000004865	ENSTRUG00000029069	ENSTRUG00000004836	ENSTRUG00000029235	ENSTRUG00000004759	disp1 (ENSTRUG00000004602)	HMBOX1 (ENSTRUG00000020592)	KIF13B (ENSTRUG00000003931)	elp3 (ENSTRUG00000003113)	si:ch211-63o20.7 (ENSTRUG00000024378)	pnocb (ENSTRUG00000002503)	znf395b (ENSTRUG00000002307)	paqr8 (ENSTRUG00000002225) #21	mcm3 (ENSTRUG00000001596) #22	ENSTRUG00000020732	stmn4 (ENSTRUG00000001455)	emilin1a (ENSTRUG00000024201)	ankef1a (ENSTRUG00000001116)	ENSTRUG00000032825	mep1a.1 (ENSTRUG00000028118)	mep1a.2 (ENSTRUG00000004892)	ENSTRUG00000023061	ENSTRUG00000021997	TAAR1 (ENSTRUG00000004891)	TAAR1 (ENSTRUG00000004890)	ENSTRUG00000029680	TAAR1 (ENSTRUG00000026196)	ENSTRUG00000031044	ENSTRUG00000030271
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
European seabass	MODERN SPECIES	7	ENSDLAG00005033196	ENSDLAG00005014720	ENSDLAG00005014732	mep1a.1 (ENSDLAG00005014921)	ENSDLAG00005028785	brox (ENSDLAG00005032102)	ENSDLAG00005015063	ENSDLAG00005015080	ENSDLAG00005015096	ENSDLAG00005000194	ENSDLAG00005030130	ENSDLAG00005000329	elp3 (ENSDLAG00005028766)	si:ch211-63o20.7 (ENSDLAG00005000871)	znf395b (ENSDLAG00005000893)	mcm3 (ENSDLAG00005000903) #22	ENSDLAG00005000925	stmn4 (ENSDLAG00005000928)	emilin1a (ENSDLAG00005000932)	ankef1a (ENSDLAG00005000937)	snap25a (ENSDLAG00005000946)	sccpdhb (ENSDLAG00005000966)	cnstb (ENSDLAG00005028602)	ENSDLAG00005001031	ENSDLAG00005001037	hnrnpub (ENSDLAG00005001043)	lft1 (ENSDLAG00005001061)	cdc42bpab (ENSDLAG00005001801)	fzd3a (ENSDLAG00005014961)	fbxo16 (ENSDLAG00005014987)	ENSDLAG00005015016
Large yellow croaker	MODERN SPECIES	482	mep1a.1 (ENSLCRG00005021017)	ENSLCRG00005021014	brox (ENSLCRG00005021013)	ENSLCRG00005021011	ENSLCRG00005021010	ENSLCRG00005021009	ENSLCRG00005020959	disp1 (ENSLCRG00005020957)	HMBOX1 (ENSLCRG00005020955)	KIF13B (ENSLCRG00005020915)	elp3 (ENSLCRG00005020704)	si:ch211-63o20.7 (ENSLCRG00005020703)	pnocb (ENSLCRG00005020701)	znf395b (ENSLCRG00005020700)	paqr8 (ENSLCRG00005020699) #21	mcm3 (ENSLCRG00005020698) #22	il17a/f3 (ENSLCRG00005020696) #23	stmn4 (ENSLCRG00005020695)	emilin1a (ENSLCRG00005020694)	ankef1a (ENSLCRG00005020693)	snap25a (ENSLCRG00005020677)	cnstb (ENSLCRG00005020670)	ENSLCRG00005020667	ENSLCRG00005020666	hnrnpub (ENSLCRG00005020466)	lft1 (ENSLCRG00005020460)	cdc42bpab (ENSLCRG00005008268)	fzd3a (ENSLCRG00005008135)	fbxo16 (ENSLCRG00005008133)	fam49a (ENSLCRG00005008104)	vsnl1a (ENSLCRG00005008100)
Gilthead seabream	MODERN SPECIES	14	ENSSAUG00010002806	ENSSAUG00010020899	mep1a.2 (ENSSAUG00010020892)	mep1a.1 (ENSSAUG00010020890)	ENSSAUG00010020889	brox (ENSSAUG00010020887)	ENSSAUG00010020884	ENSSAUG00010020882	ENSSAUG00010020878	disp1 (ENSSAUG00010020877)	HMBOX1 (ENSSAUG00010020875)	KIF13B (ENSSAUG00010017552)	elp3 (ENSSAUG00010017444)	pnocb (ENSSAUG00010017434)	znf395b (ENSSAUG00010017431)	mcm3 (ENSSAUG00010017176) #22	ENSSAUG00010017139	si:ch211-63o20.7 (ENSSAUG00010017137)	emilin1a (ENSSAUG00010017133)	ankef1a (ENSSAUG00010017130)	snap25a (ENSSAUG00010017119)	sccpdhb (ENSSAUG00010016662)	cnstb (ENSSAUG00010016650)	ENSSAUG00010016648	hnrnpub (ENSSAUG00010016615)	lft1 (ENSSAUG00010016610)	ENSSAUG00010016609	cdc42bpab (ENSSAUG00010011853)	fzd3a (ENSSAUG00010011760)	fbxo16 (ENSSAUG00010011755)	fam49a (ENSSAUG00010011251)
Perciformes	ANCESTRAL SPECIES	14	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00950000183111.a.b	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT01030000235230	ENSGT00980000199001	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Lumpfish	MODERN SPECIES	16	mep1a.1 (ENSCLMG00005019837)	ENSCLMG00005019854	brox (ENSCLMG00005019857)	ENSCLMG00005019859	ENSCLMG00005019861	ENSCLMG00005019864	ENSCLMG00005019866	TLR5 (ENSCLMG00005019882)	disp1 (ENSCLMG00005020064)	HMBOX1 (ENSCLMG00005020065)	KIF13B (ENSCLMG00005020093)	elp3 (ENSCLMG00005020255)	si:ch211-63o20.7 (ENSCLMG00005020275)	pnocb (ENSCLMG00005020276)	znf395b (ENSCLMG00005020277)	mcm3 (ENSCLMG00005020280) #22	ENSCLMG00005020285	stmn4 (ENSCLMG00005020288)	emilin1a (ENSCLMG00005020290)	ankef1a (ENSCLMG00005020291)	snap25a (ENSCLMG00005020299)	ENSCLMG00005020301	hnrnpub (ENSCLMG00005020305)	lft1 (ENSCLMG00005020334)	cdc42bpab (ENSCLMG00005020405)	fzd3a (ENSCLMG00005002830)	fbxo16 (ENSCLMG00005002871)	fam49a (ENSCLMG00005002940)	vsnl1a (ENSCLMG00005003163)	sf3b6 (ENSCLMG00005003164)	tdrd6 (ENSCLMG00005003166)
Stickleback	MODERN SPECIES	18	ENSGACG00000004287	mep1a.2 (ENSGACG00000004292)	mep1a.1 (ENSGACG00000004319)	brox (ENSGACG00000004335)	ENSGACG00000004375	ENSGACG00000004376	ENSGACG00000004379	TLR5 (ENSGACG00000004381)	disp1 (ENSGACG00000004386)	HMBOX1 (ENSGACG00000004391)	KIF13B (ENSGACG00000004401)	elp3 (ENSGACG00000004427)	si:ch211-63o20.7 (ENSGACG00000004453)	pnocb (ENSGACG00000004461)	znf395b (ENSGACG00000004464)	mcm3 (ENSGACG00000004469) #22	stmn4 (ENSGACG00000004482)	emilin1a (ENSGACG00000004508)	ankef1a (ENSGACG00000004520)	snap25a (ENSGACG00000004546)	ENSGACG00000004618	ENSGACG00000004653	ENSGACG00000004657	ENSGACG00000004658	ENSGACG00000004668	hnrnpub (ENSGACG00000004679)	lft1 (ENSGACG00000004693)	cdc42bpab (ENSGACG00000004707)	fzd3a (ENSGACG00000004714)	fbxo16 (ENSGACG00000004722)	ENSGACG00000004726
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00940000159678	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000174980	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a
Pike perch	MODERN SPECIES	129	mep1a.2 (ENSSLUG00000016596)	mep1a.1 (ENSSLUG00000016584)	ENSSLUG00000016577	brox (ENSSLUG00000016556)	ENSSLUG00000016543	ENSSLUG00000016536	TLR5 (ENSSLUG00000016532)	disp1 (ENSSLUG00000016523)	HMBOX1 (ENSSLUG00000016513)	KIF13B (ENSSLUG00000014228)	elp3 (ENSSLUG00000013311)	si:ch211-63o20.7 (ENSSLUG00000013275)	pnocb (ENSSLUG00000013270)	znf395b (ENSSLUG00000013264)	paqr8 (ENSSLUG00000013262) #21	mcm3 (ENSSLUG00000013146) #22	ENSSLUG00000013112	stmn4 (ENSSLUG00000013099)	emilin1a (ENSSLUG00000013089)	ankef1a (ENSSLUG00000013081)	snap25a (ENSSLUG00000013056)	ENSSLUG00000013049	sccpdhb (ENSSLUG00000013041)	ENSSLUG00000013036	ENSSLUG00000013030	ENSSLUG00000013024	ENSSLUG00000013010	hnrnpub (ENSSLUG00000012886)	lft1 (ENSSLUG00000012848)	cdc42bpab (ENSSLUG00000012618)	fzd3a (ENSSLUG00000012560)
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000007654	mep1a.2 (ENSCGOG00000007649)	ENSCGOG00000007646	mep1a.1 (ENSCGOG00000007546)	ENSCGOG00000007542	ENSCGOG00000007541	ENSCGOG00000007540	disp1 (ENSCGOG00000007532)	HMBOX1 (ENSCGOG00000007526)	KIF13B (ENSCGOG00000004597)	elp3 (ENSCGOG00000003965)	si:ch211-63o20.7 (ENSCGOG00000003948)	pnocb (ENSCGOG00000003945)	znf395b (ENSCGOG00000003942)	paqr8 (ENSCGOG00000003937) #21	mcm3 (ENSCGOG00000002993) #22	il17a/f3 (ENSCGOG00000002946) #23	stmn4 (ENSCGOG00000002938)	emilin1a (ENSCGOG00000002936)	ankef1a (ENSCGOG00000002928)	ENSCGOG00000002918	snap25a (ENSCGOG00000002816)	sccpdhb (ENSCGOG00000022232)	cnstb (ENSCGOG00000022223)	ENSCGOG00000022216	hnrnpub (ENSCGOG00000022201)	lft1 (ENSCGOG00000022197)	cdc42bpab (ENSCGOG00000017526)	fbxo16 (ENSCGOG00000017358)	fam49a (ENSCGOG00000017328)	VSNL1 (ENSCGOG00000017323)
Ballan wrasse	MODERN SPECIES	41	mep1a.1 (ENSLBEG00000021377)	ENSLBEG00000021402	brox (ENSLBEG00000021422)	ENSLBEG00000021457	ENSLBEG00000021467	ENSLBEG00000021480	TLR5 (ENSLBEG00000021492)	disp1 (ENSLBEG00000021514)	HMBOX1 (ENSLBEG00000021557)	KIF13B (ENSLBEG00000021669)	elp3 (ENSLBEG00000021916)	si:ch211-63o20.7 (ENSLBEG00000021971)	pnocb (ENSLBEG00000021986)	znf395b (ENSLBEG00000022000)	paqr8 (ENSLBEG00000022027) #21	mcm3 (ENSLBEG00000022065) #22	ENSLBEG00000022137	stmn4 (ENSLBEG00000022173)	emilin1a (ENSLBEG00000022192)	ankef1a (ENSLBEG00000022262)	snap25a (ENSLBEG00000022394)	sccpdhb (ENSLBEG00000022425)	ENSLBEG00000022446	cnstb (ENSLBEG00000022460)	ENSLBEG00000022484	hnrnpub (ENSLBEG00000022520)	lft1 (ENSLBEG00000022573)	cdc42bpab (ENSLBEG00000022609)	fzd3a (ENSLBEG00000022728)	fbxo16 (ENSLBEG00000022850)	fam49a (ENSLBEG00000022873)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Aplocheiloidei	ANCESTRAL SPECIES	102	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d
Mangrove rivulus	MODERN SPECIES	174	ENSKMAG00000019268	brox (ENSKMAG00000019289)	ENSKMAG00000019322	ENSKMAG00000019337	ENSKMAG00000019359	TLR5 (ENSKMAG00000019374)	disp1 (ENSKMAG00000019401)	HMBOX1 (ENSKMAG00000019434)	KIF13B (ENSKMAG00000019450)	ENSKMAG00000019492	elp3 (ENSKMAG00000019511)	si:ch211-63o20.7 (ENSKMAG00000019551)	pnocb (ENSKMAG00000019559)	znf395b (ENSKMAG00000019578)	paqr8 (ENSKMAG00000019589) #21	mcm3 (ENSKMAG00000019607) #22	il17a/f3 (ENSKMAG00000019670) #23	stmn4 (ENSKMAG00000019680)	emilin1a (ENSKMAG00000019702)	ankef1a (ENSKMAG00000019715)
Turquoise killifish	MODERN SPECIES	835																MCM3 (ENSNFUG00015009576) #22	ENSNFUG00015009556	ENSNFUG00015009554
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b
Poecilia	ANCESTRAL SPECIES	9	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
NAME_6	ANCESTRAL SPECIES	85	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Amazon molly	MODERN SPECIES	463	mep1a.2 (ENSPFOG00000000495)	mep1a.1 (ENSPFOG00000000564)	ENSPFOG00000023228	brox (ENSPFOG00000000628)	ENSPFOG00000020528	ENSPFOG00000020529	TLR5 (ENSPFOG00000000726)	disp1 (ENSPFOG00000000773)	HMBOX1 (ENSPFOG00000000843)	KIF13B (ENSPFOG00000001119)	elp3 (ENSPFOG00000001657)	si:ch211-63o20.7 (ENSPFOG00000001871)	pnocb (ENSPFOG00000001912)	znf395b (ENSPFOG00000001931)	paqr8 (ENSPFOG00000020530) #21	mcm3 (ENSPFOG00000002039) #22	il17a/f3 (ENSPFOG00000024626) #23	stmn4 (ENSPFOG00000002375)	emilin1a (ENSPFOG00000002432)	ankef1a (ENSPFOG00000002517)	snap25a (ENSPFOG00000002657)	cnstb (ENSPFOG00000002789)	ENSPFOG00000002809	hnrnpub (ENSPFOG00000002908)	lft1 (ENSPFOG00000003010)	cdc42bpab (ENSPFOG00000003122)	fzd3a (ENSPFOG00000004133)	fbxo16 (ENSPFOG00000004233)	fam49a (ENSPFOG00000004341)
Sailfin molly	MODERN SPECIES	122	ENSPLAG00000014685	brox (ENSPLAG00000014667)	ENSPLAG00000014622	ENSPLAG00000014617	ENSPLAG00000014608	TLR5 (ENSPLAG00000014543)	disp1 (ENSPLAG00000014443)	HMBOX1 (ENSPLAG00000014436)	KIF13B (ENSPLAG00000014410)	ENSPLAG00000014340	elp3 (ENSPLAG00000014319)	si:ch211-63o20.7 (ENSPLAG00000014289)	pnocb (ENSPLAG00000014284)	znf395b (ENSPLAG00000014277)	paqr8 (ENSPLAG00000014267) #21	mcm3 (ENSPLAG00000014257) #22	ENSPLAG00000014208	stmn4 (ENSPLAG00000014180)
Guppy	MODERN SPECIES	452	mep1a.2 (ENSPREG00000019852)	mep1a.1 (ENSPREG00000019833)	ENSPREG00000019807	brox (ENSPREG00000019785)	ENSPREG00000019776	ENSPREG00000019705	TLR5 (ENSPREG00000019675)	disp1 (ENSPREG00000019639)	HMBOX1 (ENSPREG00000019608)	KIF13B (ENSPREG00000019518)	elp3 (ENSPREG00000019454)	si:ch211-63o20.7 (ENSPREG00000019424)	pnocb (ENSPREG00000019418)	znf395b (ENSPREG00000019411)	paqr8 (ENSPREG00000019405) #21	mcm3 (ENSPREG00000019355) #22	ENSPREG00000019327	stmn4 (ENSPREG00000019308)	emilin1a (ENSPREG00000019292)	ankef1a (ENSPREG00000019273)	snap25a (ENSPREG00000019226)	cnstb (ENSPREG00000019179)	ENSPREG00000019145	ENSPREG00000019131	ENSPREG00000019117	lft1 (ENSPREG00000019085)	cdc42bpab (ENSPREG00000019012)	fzd3a (ENSPREG00000018969)	fbxo16 (ENSPREG00000018940)	fam49a (ENSPREG00000018894)	vsnl1a (ENSPREG00000018875)
Platyfish	MODERN SPECIES	6	mep1a.2 (ENSXMAG00000001763)	mep1a.1 (ENSXMAG00000001768)	ENSXMAG00000001775	brox (ENSXMAG00000001776)	ENSXMAG00000001787	ENSXMAG00000020057	TLR5 (ENSXMAG00000001788)	disp1 (ENSXMAG00000001789)	HMBOX1 (ENSXMAG00000001795)	KIF13B (ENSXMAG00000001804)	elp3 (ENSXMAG00000001825)	si:ch211-63o20.7 (ENSXMAG00000025014)	pnocb (ENSXMAG00000007809)	znf395b (ENSXMAG00000007800)	paqr8 (ENSXMAG00000019722) #21	mcm3 (ENSXMAG00000007764) #22	ENSXMAG00000024073	stmn4 (ENSXMAG00000007755)	emilin1a (ENSXMAG00000007750)	ankef1a (ENSXMAG00000007741)	ENSXMAG00000028320	snap25a (ENSXMAG00000007734)	cnstb (ENSXMAG00000028462)	ENSXMAG00000010348	hnrnpub (ENSXMAG00000010356)	lft1 (ENSXMAG00000014683)	cdc42bpab (ENSXMAG00000010796)	fzd3a (ENSXMAG00000010779)	fbxo16 (ENSXMAG00000010768)	fam49a (ENSXMAG00000010759)	vsnl1a (ENSXMAG00000010752)
NAME_4	ANCESTRAL SPECIES	167									ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00940000174799	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Sheepshead minnow	MODERN SPECIES	673																mcm3 (ENSCVAG00000003962) #22	il17a/f3 (ENSCVAG00000003976) #23	stmn4 (ENSCVAG00000003980)	emilin1a (ENSCVAG00000003993)	ankef1a (ENSCVAG00000004008)	snap25a (ENSCVAG00000004040)	cnstb (ENSCVAG00000004051)	ENSCVAG00000004063	hnrnpub (ENSCVAG00000004280)	lft1 (ENSCVAG00000004301)	cdc42bpab (ENSCVAG00000004580)	fzd3a (ENSCVAG00000004608)	fbxo16 (ENSCVAG00000004708)	fam49a (ENSCVAG00000004748)
Mummichog	MODERN SPECIES	459								HMBOX1 (ENSFHEG00000006890)	KIF13B (ENSFHEG00000007070)	ENSFHEG00000007082	elp3 (ENSFHEG00000007122)	si:ch211-63o20.7 (ENSFHEG00000007134)	pnocb (ENSFHEG00000007145)	znf395b (ENSFHEG00000007167)	paqr8 (ENSFHEG00000007173) #21	mcm3 (ENSFHEG00000007224) #22	ENSFHEG00000007232	stmn4 (ENSFHEG00000007251)
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Indian medaka	MODERN SPECIES	22	atraid (ENSOMEG00000000842)	eif2b4 (ENSOMEG00000015664)	nme6 (ENSOMEG00000015579)	ENSOMEG00000015547	KIF13B (ENSOMEG00000015533)	HMBOX1 (ENSOMEG00000015496)	disp1 (ENSOMEG00000015454)	TLR5 (ENSOMEG00000015427)	ENSOMEG00000015395	ENSOMEG00000015389	elp3 (ENSOMEG00000015360)	si:ch211-63o20.7 (ENSOMEG00000015299)	pnocb (ENSOMEG00000015283)	znf395b (ENSOMEG00000015274)	paqr8 (ENSOMEG00000015257) #21	mcm3 (ENSOMEG00000015230) #22	il17a/f3 (ENSOMEG00000015139) #23	stmn4 (ENSOMEG00000015119)	emilin1a (ENSOMEG00000015102)	ankef1a (ENSOMEG00000015083)	snap25a (ENSOMEG00000015054)	cnstb (ENSOMEG00000015019)	ENSOMEG00000014992	hnrnpub (ENSOMEG00000014951)	lft1 (ENSOMEG00000014909)	cdc42bpab (ENSOMEG00000014868)	fzd3a (ENSOMEG00000001038)	fbxo16 (ENSOMEG00000000364)	fam49a (ENSOMEG00000014624)	vsnl1a (ENSOMEG00000014521)	sf3b6 (ENSOMEG00000014506)
Javanese ricefish	MODERN SPECIES	16	nme6 (ENSOJAG00000018826)	eif2b4 (ENSOJAG00000018738)	atraid (ENSOJAG00000018718)	snx17 (ENSOJAG00000018680)	znf513a (ENSOJAG00000018668)	KIF13B (ENSOJAG00000016463)	HMBOX1 (ENSOJAG00000016311)	TLR5 (ENSOJAG00000016284)	ENSOJAG00000016247	ENSOJAG00000016197	elp3 (ENSOJAG00000016009)	si:ch211-63o20.7 (ENSOJAG00000016004)	pnocb (ENSOJAG00000015999)	znf395b (ENSOJAG00000015995)	paqr8 (ENSOJAG00000015988) #21	mcm3 (ENSOJAG00000015618) #22	il17a/f3 (ENSOJAG00000015606) #23	stmn4 (ENSOJAG00000015593)	emilin1a (ENSOJAG00000015582)	ankef1a (ENSOJAG00000015571)	snap25a (ENSOJAG00000015504)	cnstb (ENSOJAG00000015449)	ENSOJAG00000015382	hnrnpub (ENSOJAG00000015260)	lft1 (ENSOJAG00000015234)	cdc42bpab (ENSOJAG00000005241)	fzd3a (ENSOJAG00000004150)	fbxo16 (ENSOJAG00000004130)	fam49a (ENSOJAG00000003754)	vsnl1a (ENSOJAG00000003661)	sf3b6 (ENSOJAG00000003639)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000017252	ENSGT00550000075009	ENSGT00940000160284	ENSGT00390000013853	ENSGT00940000155500.f	ENSGT00940000154928.c.a.b	ENSGT00940000157407	ENSGT00940000162464.q	ENSGT00830000128368.a	ENSGT00940000175238	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.b	ENSGT00390000005908
Japanese Medaka HdrR	MODERN SPECIES	16	atraid (ENSORLG00000016287)	eif2b4 (ENSORLG00000016283)	nme6 (ENSORLG00000027536)	ENSORLG00000016269	ENSORLG00000016265	HMBOX1 (ENSORLG00000016242)	disp1 (ENSORLG00000016227)	TLR5 (ENSORLG00000016221)	ENSORLG00000026137	ENSORLG00000025386	elp3 (ENSORLG00000016211)	si:ch211-63o20.7 (ENSORLG00000016204)	pnocb (ENSORLG00000016198)	znf395b (ENSORLG00000016195)	paqr8 (ENSORLG00000016192) #21	mcm3 (ENSORLG00000016187) #22	il17a/f3 (ENSORLG00000027446) #23	stmn4 (ENSORLG00000016161)	emilin1a (ENSORLG00000016152)	ankef1a (ENSORLG00000016142)	snap25a (ENSORLG00000016124)	cnstb (ENSORLG00000026472)	ENSORLG00000016117	hnrnpub (ENSORLG00000016114)	lft1 (ENSORLG00000016105)	cdc42bpab (ENSORLG00000016081)	fzd3a (ENSORLG00000015986)	fbxo16 (ENSORLG00000015978)	fam49a (ENSORLG00000015966)	ENSORLG00000023053	ENSORLG00000029879
Chinese medaka	MODERN SPECIES	796	snx17 (ENSOSIG00000013179)	atraid (ENSOSIG00000013324)	eif2b4 (ENSOSIG00000013327)	nme6 (ENSOSIG00000013331)	ENSOSIG00000013333	KIF13B (ENSOSIG00000013341)	HMBOX1 (ENSOSIG00000013529)	disp1 (ENSOSIG00000013533)	TLR5 (ENSOSIG00000013534)	ENSOSIG00000013535	ENSOSIG00000013536	elp3 (ENSOSIG00000013540)	si:ch211-63o20.7 (ENSOSIG00000013548)	pnocb (ENSOSIG00000013551)	znf395b (ENSOSIG00000013555)	mcm3 (ENSOSIG00000013558) #22	il17a/f3 (ENSOSIG00000013568) #23	stmn4 (ENSOSIG00000013574)	emilin1a (ENSOSIG00000013585)	ankef1a (ENSOSIG00000013599)	snap25a (ENSOSIG00000013608)	cnstb (ENSOSIG00000013803)	ENSOSIG00000013807	ENSOSIG00000013811	hnrnpub (ENSOSIG00000013815)	lft1 (ENSOSIG00000013816)	cdc42bpab (ENSOSIG00000013919)	fzd3a (ENSOSIG00000020399)	fbxo16 (ENSOSIG00000020402)	fam49a (ENSOSIG00000020436)	VSNL1 (ENSOSIG00000020565)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Pomacentridae	ANCESTRAL SPECIES	30	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Pomacentridae_A	ANCESTRAL SPECIES	26	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Amphiprion	ANCESTRAL SPECIES	113	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000164218	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00990000203917	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908
Orange clownfish	MODERN SPECIES	2	brox (ENSAPEG00000013758)	ENSAPEG00000013795	ENSAPEG00000013805	ENSAPEG00000013826	disp1 (ENSAPEG00000013871)	ENSAPEG00000013921	ENSAPEG00000013938	HMBOX1 (ENSAPEG00000013963)	ENSAPEG00000014024	ENSAPEG00000014090	elp3 (ENSAPEG00000014113)	si:ch211-63o20.7 (ENSAPEG00000014157)	pnocb (ENSAPEG00000014170)	znf395b (ENSAPEG00000014182)	paqr8 (ENSAPEG00000014188) #21	mcm3 (ENSAPEG00000014200) #22	ENSAPEG00000014273	stmn4 (ENSAPEG00000014317)	emilin1a (ENSAPEG00000014361)	ankef1a (ENSAPEG00000014440)	snap25a (ENSAPEG00000014574)	sccpdhb (ENSAPEG00000014595)	cnstb (ENSAPEG00000014613)	ENSAPEG00000014631	hnrnpub (ENSAPEG00000014679)	lft1 (ENSAPEG00000014731)	cdc42bpab (ENSAPEG00000014843)	fzd3a (ENSAPEG00000015142)	fbxo16 (ENSAPEG00000015182)	fam49a (ENSAPEG00000015213)	vsnl1a (ENSAPEG00000015297)
Clown anemonefish	MODERN SPECIES	1204										ENSAOCG00000010958	elp3 (ENSAOCG00000010984)	si:ch211-63o20.7 (ENSAOCG00000000695)	pnocb (ENSAOCG00000011006)	znf395b (ENSAOCG00000011012)	paqr8 (ENSAOCG00000011023) #21	mcm3 (ENSAOCG00000011074) #22
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	4325																mcm3 (ENSAPOG00000012758) #22
Spiny chromis	MODERN SPECIES	4333																mcm3 (ENSAPOG00000012516) #22
Spiny chromis	MODERN SPECIES	4336																mcm3 (ENSAPOG00000012414) #22
Spiny chromis	MODERN SPECIES	2226																mcm3 (ENSAPOG00000006541) #22	ENSAPOG00000006484	stmn4 (ENSAPOG00000006473)
Bicolor damselfish	MODERN SPECIES	855								HMBOX1 (ENSSPAG00000020569)	KIF13B (ENSSPAG00000020496)	ENSSPAG00000020485	elp3 (ENSSPAG00000020449)	si:ch211-63o20.7 (ENSSPAG00000020436)	pnocb (ENSSPAG00000020418)	znf395b (ENSSPAG00000020400)	paqr8 (ENSSPAG00000020394) #21	mcm3 (ENSSPAG00000020349) #22	ENSSPAG00000020312	stmn4 (ENSSPAG00000020276)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00950000183111.a.a	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Nile tilapia	MODERN SPECIES	6	ENSONIG00000020924	ENSONIG00000039277	ENSONIG00000033230	ENSONIG00000020923	ENSONIG00000042239	TLR5 (ENSONIG00000001333)	disp1 (ENSONIG00000001330)	ENSONIG00000036493	HMBOX1 (ENSONIG00000001328)	KIF13B (ENSONIG00000001311)	elp3 (ENSONIG00000001307)	si:ch211-63o20.7 (ENSONIG00000001306)	pnocb (ENSONIG00000040429)	znf395b (ENSONIG00000036384)	paqr8 (ENSONIG00000020922) #21	mcm3 (ENSONIG00000001295) #22	ENSONIG00000001294	stmn4 (ENSONIG00000001293)	emilin1a (ENSONIG00000001290)	ankef1a (ENSONIG00000001282)	snap25a (ENSONIG00000001276)	he1.2 (ENSONIG00000037262)	cnstb (ENSONIG00000032036)	ENSONIG00000001269	hnrnpub (ENSONIG00000001260)	lft1 (ENSONIG00000001253)	cdc42bpab (ENSONIG00000001238)	fzd3a (ENSONIG00000001234)	fbxo16 (ENSONIG00000001230)	fam49a (ENSONIG00000001228)	VSNL1 (ENSONIG00000001225)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000154603.A.f.b	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.h	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Burton s mouthbrooder	MODERN SPECIES	286									HMBOX1 (ENSHBUG00000011164)	KIF13B (ENSHBUG00000011324)	elp3 (ENSHBUG00000011383)	si:ch211-63o20.7 (ENSHBUG00000011405)	pnocb (ENSHBUG00000011424)	znf395b (ENSHBUG00000011443)	paqr8 (ENSHBUG00000011665) #21	mcm3 (ENSHBUG00000011722) #22	ENSHBUG00000011737	stmn4 (ENSHBUG00000011752)	emilin1a (ENSHBUG00000012025)	ankef1a (ENSHBUG00000012124)	snap25a (ENSHBUG00000012144)	ENSHBUG00000012237	cnstb (ENSHBUG00000012245)	ENSHBUG00000012254	hnrnpub (ENSHBUG00000012290)	lft1 (ENSHBUG00000000814)	cdc42bpab (ENSHBUG00000000350)	fzd3a (ENSHBUG00000012457)	fbxo16 (ENSHBUG00000012505)	fam49a (ENSHBUG00000012532)	vsnl1a (ENSHBUG00000012542)
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000161541	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000161541	ENSGT00940000170226	ENSGT00390000006681	ENSGT00390000007341.b	ENSGT00940000175238	ENSGT00830000128368.a	ENSGT00940000162464.q	ENSGT00940000157407	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e.c #21	ENSGT01050000244824.B #22	ENSGT00940000175981	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00940000154856.A.b.g.a.b	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b	ENSGT00940000156491.a	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Zebra mbuna	MODERN SPECIES	76				ENSMZEG00005022776	ENSMZEG00005022775	TLR5 (ENSMZEG00005022774)	disp1 (ENSMZEG00005022769)	ENSMZEG00005022768	HMBOX1 (ENSMZEG00005022766)	KIF13B (ENSMZEG00005022759)	elp3 (ENSMZEG00005022755)	si:ch211-63o20.7 (ENSMZEG00005022752)	pnocb (ENSMZEG00005022751)	znf395b (ENSMZEG00005022748)	ENSMZEG00005022746 #21	mcm3 (ENSMZEG00005022743) #22	ENSMZEG00005022740	stmn4 (ENSMZEG00005022738)	ENSMZEG00005022733
Eastern happy	MODERN SPECIES	6	ENSACLG00000009624	ENSACLG00000009620	brox (ENSACLG00000009591)	ENSACLG00000009586	ENSACLG00000009234	ENSACLG00000009215	TLR5 (ENSACLG00000009202)	disp1 (ENSACLG00000009170)	HMBOX1 (ENSACLG00000009067)	KIF13B (ENSACLG00000008995)	elp3 (ENSACLG00000008972)	si:ch211-63o20.7 (ENSACLG00000008500)	pnocb (ENSACLG00000008488)	znf395b (ENSACLG00000008468)	ENSACLG00000008462 #21	mcm3 (ENSACLG00000008434) #22	ENSACLG00000008427	stmn4 (ENSACLG00000008407)	emilin1a (ENSACLG00000008275)	ankef1a (ENSACLG00000008259)	snap25a (ENSACLG00000008238)	ENSACLG00000008209	cnstb (ENSACLG00000008204)	ENSACLG00000008195	hnrnpub (ENSACLG00000008165)	lft1 (ENSACLG00000008151)	cdc42bpab (ENSACLG00000008108)	fzd3a (ENSACLG00000008090)	fbxo16 (ENSACLG00000008073)	fam49a (ENSACLG00000008056)	vsnl1a (ENSACLG00000007802)
P. nyererei	MODERN SPECIES	308	ENSPNYG00000020923	brox (ENSPNYG00000020941)	ENSPNYG00000020971	ENSPNYG00000020979	ENSPNYG00000020988	ENSPNYG00000020997	TLR5 (ENSPNYG00000021037)	disp1 (ENSPNYG00000021059)	HMBOX1 (ENSPNYG00000021100)	KIF13B (ENSPNYG00000021149)	elp3 (ENSPNYG00000021199)	si:ch211-63o20.7 (ENSPNYG00000021251)	pnocb (ENSPNYG00000021265)	znf395b (ENSPNYG00000021284)	ENSPNYG00000021315 #21	mcm3 (ENSPNYG00000021333) #22	ENSPNYG00000021361	stmn4 (ENSPNYG00000021377)	emilin1a (ENSPNYG00000021397)	ankef1a (ENSPNYG00000021429)	snap25a (ENSPNYG00000021470)	ENSPNYG00000021503	cnstb (ENSPNYG00000021537)	ENSPNYG00000021572	hnrnpub (ENSPNYG00000021642)	lft1 (ENSPNYG00000021680)	cdc42bpab (ENSPNYG00000021718)	fzd3a (ENSPNYG00000021766)	fbxo16 (ENSPNYG00000021787)	fam49a (ENSPNYG00000021805)	vsnl1a (ENSPNYG00000021821)
Lyretail cichlid	MODERN SPECIES	316												si:ch211-63o20.7 (ENSNBRG00000017284)	pnocb (ENSNBRG00000017299)	znf395b (ENSNBRG00000017316)	paqr8 (ENSNBRG00000017333) #21	mcm3 (ENSNBRG00000017357) #22	ENSNBRG00000017430	stmn4 (ENSNBRG00000017485)	emilin1a (ENSNBRG00000017653)	ankef1a (ENSNBRG00000017686)	snap25a (ENSNBRG00000017728)	ENSNBRG00000017762	ENSNBRG00000017796	hnrnpub (ENSNBRG00000017855)	lft1 (ENSNBRG00000017915)	cdc42bpab (ENSNBRG00000018000)	ARPC5 (ENSNBRG00000018168)	ENSNBRG00000018181	fbxo16 (ENSNBRG00000018191)	fam49a (ENSNBRG00000018205)	vsnl1a (ENSNBRG00000018237)
Midas cichlid	MODERN SPECIES	1196									srp9 (ENSACIG00000022298)	KIF13B (ENSACIG00000022249)	elp3 (ENSACIG00000022227)	si:ch211-63o20.7 (ENSACIG00000022218)	pnocb (ENSACIG00000022211)	znf395b (ENSACIG00000022190)	paqr8 (ENSACIG00000022167) #21	mcm3 (ENSACIG00000022146) #22	ENSACIG00000022134	stmn4 (ENSACIG00000022120)	emilin1a (ENSACIG00000022030)	ENSACIG00000021903	ENSACIG00000021876	ENSACIG00000021867	ZC3H6 (ENSACIG00000021843)	ENSACIG00000021820	itga9 (ENSACIG00000021762)	ENSACIG00000021743	ENSACIG00000021728	ENSACIG00000021721	KCNK12 (ENSACIG00000021712)	msh6 (ENSACIG00000021689)	ENSACIG00000021646
Pinecone sodierfish	MODERN SPECIES	16	brox (ENSMMDG00005010618)	ENSMMDG00005010631	ENSMMDG00005010632	ENSMMDG00005010636	ENSMMDG00005010637	ENSMMDG00005010638	TLR5 (ENSMMDG00005010650)	disp1 (ENSMMDG00005011170)	HMBOX1 (ENSMMDG00005011173)	KIF13B (ENSMMDG00005011280)	elp3 (ENSMMDG00005015987)	si:ch211-63o20.7 (ENSMMDG00005016091)	pnocb (ENSMMDG00005016093)	znf395b (ENSMMDG00005016094)	paqr8 (ENSMMDG00005016096) #21	mcm3 (ENSMMDG00005016110) #22	ENSMMDG00005016180	stmn4 (ENSMMDG00005016183)	emilin1a (ENSMMDG00005016185)	ankef1a (ENSMMDG00005016192)	snap25a (ENSMMDG00005016197)	sccpdhb (ENSMMDG00005016214)	ENSMMDG00005016274	ENSMMDG00005002548	hnrnpub (ENSMMDG00005002655)	lft1 (ENSMMDG00005004998)	cdc42bpab (ENSMMDG00005005174)	fzd3a (ENSMMDG00005008184)	fbxo16 (ENSMMDG00005008194)	fam49a (ENSMMDG00005008220)	vsnl1a (ENSMMDG00005008866)
Cod	DUPLICATION
Cod	MODERN SPECIES	3	ENSGMOG00000032827	ENSGMOG00000027611	ENSGMOG00000036634	ENSGMOG00000029318	NAALADL2 (ENSGMOG00000033608)	ENSGMOG00000034887	ENSGMOG00000013578	ENSGMOG00000034640	ENSGMOG00000017718	ENSGMOG00000017738	ENSGMOG00000002087	ENSGMOG00000028574	ENSGMOG00000029420	ENSGMOG00000001071	ENSGMOG00000027434	mcm3l (ENSGMOG00000016488) #22	ENSGMOG00000004169	ENSGMOG00000003154	ENSGMOG00000016645	ENSGMOG00000016633	ENSGMOG00000033138	ENSGMOG00000015105	ENSGMOG00000029535	PDE4B (ENSGMOG00000006501)	ENSGMOG00000006467	ENSGMOG00000032209	dnai4 (ENSGMOG00000015481)	pars2 (ENSGMOG00000015460)	ENSGMOG00000006256	ENSGMOG00000006271	ENSGMOG00000018572
Cod	MODERN SPECIES	13	ENSGMOG00000034835	ENSGMOG00000030172	ENSGMOG00000031017	ENSGMOG00000036977	ENSGMOG00000024877	ENSGMOG00000000601	ENSGMOG00000000611	ENSGMOG00000017957	ENSGMOG00000029100	ENSGMOG00000030695	ENSGMOG00000029003	ENSGMOG00000027137	ENSGMOG00000012418	ENSGMOG00000032540	paqr8 (ENSGMOG00000029479) #21	ENSGMOG00000000832 #22	stmn4 (ENSGMOG00000023347)	ENSGMOG00000024035	ENSGMOG00000031634	ENSGMOG00000008578	ENSGMOG00000008575	ENSGMOG00000008571	ENSGMOG00000008560	ENSGMOG00000008550	ENSGMOG00000003573	gabrr1 (ENSGMOG00000010603)	GABRR2 (ENSGMOG00000000454)	ube2j1 (ENSGMOG00000015107)	ANKRD6 (ENSGMOG00000002106)	LYRM2 (ENSGMOG00000032297)	MDN1 (ENSGMOG00000009684)
Otomorpha	ANCESTRAL SPECIES	64	ENSGT00940000176161	ENSGT00390000003866.a.b.b	ENSGT01030000234532.A.a.b.a	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000000083.a	ENSGT00940000156692	ENSGT00390000001445	ENSGT00940000154928.c.a.b	ENSGT00940000155500.f	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b
Clupeiformes	ANCESTRAL SPECIES	260			ENSGT00940000166222	ENSGT00390000004746	ENSGT00940000167364	ENSGT00940000157354.i	ENSGT00940000154843.F.c.b	ENSGT00390000009122	ENSGT00940000155842.s	ENSGT00940000156080.l	ENSGT00940000154872.B	ENSGT00940000157394.a	ENSGT00940000158092.o	ENSGT00940000156328.a.b	ENSGT00950000183102.A.b.a	ENSGT01050000244824.B #22	ENSGT00940000156618.d #23	ENSGT01030000234597.a.b.a.b	ENSGT00950000183111.b.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568	ENSGT00940000158019	ENSGT00940000153229.A.a.b	ENSGT01030000234624.b.b.c.a.a	ENSGT01030000234624.b.b.c.a.b
Denticle herring	MODERN SPECIES	5	ENSDCDG00000031932	kcnk3a (ENSDCDG00000031934)	slc35f6 (ENSDCDG00000031936)	mboat2b (ENSDCDG00000031943)	ENSDCDG00000031950	ENSDCDG00000031952	ENSDCDG00000031954	ENSDCDG00000031956	ENSDCDG00000031957	kcnk3a (ENSDCDG00000031959)	ENSDCDG00000031961	mboat2b (ENSDCDG00000031966)	ENSDCDG00000031969	ENSDCDG00000031970	ASAP2 (ENSDCDG00000031979)	mcm3 (ENSDCDG00000032043) #22	ENSDCDG00000032529	ENSDCDG00000032533	ENSDCDG00000032536	ENSDCDG00000003276	ENSDCDG00000003416
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	1	BPHL (ENSCHAG00000024409)	ENSCHAG00000024413	ENSCHAG00000024419	DSP (ENSCHAG00000024435)	tbc1d7 (ENSCHAG00000024454)	ENSCHAG00000024461	sirt5 (ENSCHAG00000024475)	adcy1a (ENSCHAG00000024527)	igfbp1a (ENSCHAG00000024566)	igfbp3 (ENSCHAG00000024570)	ENSCHAG00000024572	ENSCHAG00000024574	ENSCHAG00000024579	ENSCHAG00000024584	si:ch211-191a24.4 (ENSCHAG00000000324)	mcm3l (ENSCHAG00000000597) #22	mep1ba (ENSCHAG00000000890)	ENSCHAG00000000954	TRAPPC8 (ENSCHAG00000001395)	ENSCHAG00000005560	b4galt6 (ENSCHAG00000005696)	ttr (ENSCHAG00000005935)	ENSCHAG00000005948	ENSCHAG00000006042	ENSCHAG00000006129	dsc2l (ENSCHAG00000006228)	cdh2 (ENSCHAG00000006482)	aqp4 (ENSCHAG00000008107)	ENSCHAG00000008111	ENSCHAG00000008119	ENSCHAG00000008130
Atlantic herring	MODERN SPECIES	6	dtl (ENSCHAG00000020537)	PPP2R5A (ENSCHAG00000020626)	opn8c (ENSCHAG00000021073)	tagapb (ENSCHAG00000021089)	ENSCHAG00000021100	rsph3 (ENSCHAG00000021105)	ezrb (ENSCHAG00000021133)	SYTL3 (ENSCHAG00000021579)	enpp1 (ENSCHAG00000021672)	kcnk3a (ENSCHAG00000023836)	slc35f6 (ENSCHAG00000023842)	ENSCHAG00000023959	e2f6 (ENSCHAG00000026214)	mboat2b (ENSCHAG00000026224)	GPX1 (ENSCHAG00000026244)	mcm3 (ENSCHAG00000026249) #22	ENSCHAG00000026259 #23	stmn4 (ENSCHAG00000026263)	emilin1a (ENSCHAG00000026270)	ankef1a (ENSCHAG00000026273)	SNAP25 (ENSCHAG00000026280)	sccpdhb (ENSCHAG00000026292)	cnstb (ENSCHAG00000026297)	ENSCHAG00000026300	hnrnpub (ENSCHAG00000026311)	lft1 (ENSCHAG00000026327)	cdc42bpab (ENSCHAG00000026335)	fzd3a (ENSCHAG00000026363)	fbxo16 (ENSCHAG00000026367)	fam49a (ENSCHAG00000026381)	ENSCHAG00000026402
Otophysi	ANCESTRAL SPECIES	7	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.d	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00940000180531	ENSGT00940000154746.a.b	ENSGT00940000159075.B	ENSGT00940000156546.`b.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d
Characiphysae	ANCESTRAL SPECIES	24	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000005861.a	ENSGT00940000156992.e	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	17	bloc1s2 (ENSIPUG00000013494)	USP24 (ENSIPUG00000013521)	PCSK9 (ENSIPUG00000013650)	bsnd (ENSIPUG00000013697)	si:dkeyp-51f12.2 (ENSIPUG00000013708)	dhcr24 (ENSIPUG00000013718)	lexm (ENSIPUG00000013763)	ENSIPUG00000013779	sirt5 (ENSIPUG00000014162)	adcy1a (ENSIPUG00000014220)	igfbp1a (ENSIPUG00000014271)	igfbp3 (ENSIPUG00000014299)	ENSIPUG00000014338	ENSIPUG00000014368	si:ch211-191a24.4 (ENSIPUG00000014382)	mcm3l (ENSIPUG00000014393) #22	mep1b (ENSIPUG00000014431)	ENSIPUG00000014461	trappc8 (ENSIPUG00000014508)	B4galt6 (ENSIPUG00000014871)	TTR (ENSIPUG00000014900)	ENSIPUG00000014914	ENSIPUG00000014933	dsc2l (ENSIPUG00000014955)	si:dkey-5n18.1 (ENSIPUG00000014981)	cdh2 (ENSIPUG00000014994)	aqp4 (ENSIPUG00000015039)	ENSIPUG00000015055	ENSIPUG00000015072	ENSIPUG00000015081	psma8 (ENSIPUG00000015106)
Channel catfish	MODERN SPECIES	17	srd5a3 (ENSIPUG00000008842)	c25h12orf57 (ENSIPUG00000008823)	niban1a (ENSIPUG00000008779)	KIFAP3 (ENSIPUG00000008497)	mettl11b (ENSIPUG00000008461)	gorab (ENSIPUG00000008452)	PRRX1 (ENSIPUG00000008362)	ENSIPUG00000008346	ENSIPUG00000008267	slc25a24 (ENSIPUG00000008225)	elp3 (ENSIPUG00000008133)	PDIK1L (ENSIPUG00000008116)	pnoc (ENSIPUG00000008105)	znf395 (ENSIPUG00000008084)	paqr8 (ENSIPUG00000008073) #21	MCM3 (ENSIPUG00000007956) #22	Il17f (ENSIPUG00000007931) #23	Stmn4 (ENSIPUG00000007910)	emilin1a (ENSIPUG00000007899)	ankef1a (ENSIPUG00000007880)	snap25 (ENSIPUG00000007864)	cnstb (ENSIPUG00000007828)	ENSIPUG00000007794	hnrnpu (ENSIPUG00000007749)	lft1 (ENSIPUG00000007713)	cdc42bpab (ENSIPUG00000007633)	FZD3 (ENSIPUG00000007603)	fbxo16 (ENSIPUG00000007590)	fam49a (ENSIPUG00000007421)	vsnl1a (ENSIPUG00000007389)	TMEM30A (ENSIPUG00000007370)
Characiphysae_b	ANCESTRAL SPECIES	23	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000010056.b	ENSGT01030000234517.H.b.k	ENSGT00940000156491.a.d	ENSGT00940000159021	ENSGT00390000015159.a.b	ENSGT00940000156513.a.b	ENSGT00390000005908	ENSGT00940000159049.a	ENSGT00390000005233.b	ENSGT00950000183111.a.a
Characoidei	ANCESTRAL SPECIES	21	ENSGT00940000153441.a.a	ENSGT00940000157620	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886	ENSGT00940000159466.c	ENSGT00950000183190.a.a.b.c.b	ENSGT00940000164927.a	ENSGT00390000013141	ENSGT00940000166937	ENSGT00950000183149.C.b	ENSGT00940000157136.b	ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23	ENSGT01030000234597.a.b.a.b	ENSGT01030000234633.A.a.b	ENSGT00940000156852.d	ENSGT00950000182843.a.a.a.b.a.a.a.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000029153	myh6 (ENSAMXG00000025295)	slc25a29 (ENSAMXG00000032847)	ENSAMXG00000029912	ENSAMXG00000025292	ppp2r5cb (ENSAMXG00000020584)	hsp90aa1.2 (ENSAMXG00000020572)	mgat2 (ENSAMXG00000025291)	ENSAMXG00000020569	ENSAMXG00000039635	ENSAMXG00000035428	igfbp1a (ENSAMXG00000009512)	igfbp3 (ENSAMXG00000036513)	TNS3 (ENSAMXG00000009528)	si:ch211-191a24.4 (ENSAMXG00000035418)	mcm3l (ENSAMXG00000032018) #22	mep1ba (ENSAMXG00000009554)	ENSAMXG00000036278	ENSAMXG00000037574	PALLD (ENSAMXG00000009581)	cbr4 (ENSAMXG00000036711)	TRMT1L (ENSAMXG00000009602)	niban1a (ENSAMXG00000009608)	kifap3a (ENSAMXG00000009625)	ntmt2 (ENSAMXG00000009655)	gorab (ENSAMXG00000035192)	PRRX1 (ENSAMXG00000032983)	ENSAMXG00000036779	ENSAMXG00000042731	ENSAMXG00000043606	slc25a24 (ENSAMXG00000009717)
Mexicana tetra	MODERN SPECIES	18	TRMT1L (ENSAMXG00000009602)	niban1a (ENSAMXG00000009608)	kifap3a (ENSAMXG00000009625)	ntmt2 (ENSAMXG00000009655)	gorab (ENSAMXG00000035192)	PRRX1 (ENSAMXG00000032983)	ENSAMXG00000036779	ENSAMXG00000042731	ENSAMXG00000043606	slc25a24 (ENSAMXG00000009717)	elp3 (ENSAMXG00000009723)	si:ch211-63o20.7 (ENSAMXG00000009746)	pnocb (ENSAMXG00000042920)	znf395b (ENSAMXG00000009775)	paqr8 (ENSAMXG00000025525) #21	mcm3 (ENSAMXG00000009797) #22	il17a/f3 (ENSAMXG00000039772) #23	stmn4 (ENSAMXG00000041709)	cdc42bpb (ENSAMXG00000019172)	vipas39 (ENSAMXG00000019164)	ENSAMXG00000026157	runx2b (ENSAMXG00000035698)	opn8a (ENSAMXG00000030048)	opn8b (ENSAMXG00000032634)	mmut (ENSAMXG00000017324)	fkbp1b (ENSAMXG00000032570)	wdcp (ENSAMXG00000017293)	mfsd2b (ENSAMXG00000017279)	UBXN2A (ENSAMXG00000035346)	ATAD2B (ENSAMXG00000017229)	KLHL29 (ENSAMXG00000017203)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	13	bloc1s2 (ENSPNAG00000029256)	USP24 (ENSPNAG00000029226)	PCSK9 (ENSPNAG00000029007)	ENSPNAG00000028995	si:dkeyp-51f12.2 (ENSPNAG00000004482)	dhcr24 (ENSPNAG00000028979)	ENSPNAG00000028890	ENSPNAG00000028878	ENSPNAG00000028865	sirt5 (ENSPNAG00000028851)	adcy1a (ENSPNAG00000028838)	igfbp1a (ENSPNAG00000005775)	igfbp3 (ENSPNAG00000028714)	ENSPNAG00000005173	si:ch211-191a24.4 (ENSPNAG00000028597)	mcm3l (ENSPNAG00000028584) #22	mep1ba (ENSPNAG00000028478)	mep1ba (ENSPNAG00000004353)	ENSPNAG00000028337	TRAPPC8 (ENSPNAG00000028290)	opn7a (ENSPNAG00000028088)	b4galt6 (ENSPNAG00000028079)	ttr (ENSPNAG00000028049)	ENSPNAG00000028033	ENSPNAG00000005279	ENSPNAG00000027969	ENSPNAG00000027949	dsc2l (ENSPNAG00000027829)	si:dkey-5n18.1 (ENSPNAG00000027804)	cdh2 (ENSPNAG00000027771)	aqp4 (ENSPNAG00000027697)
Red-bellied piranha	MODERN SPECIES	329			TRMT1L (ENSPNAG00000004389)	niban1a (ENSPNAG00000005531)	kifap3a (ENSPNAG00000028726)	ntmt2 (ENSPNAG00000028749)	gorab (ENSPNAG00000028768)	PRRX1 (ENSPNAG00000028803)	ENSPNAG00000028915	slc25a24 (ENSPNAG00000028987)	elp3 (ENSPNAG00000029054)	si:ch211-63o20.7 (ENSPNAG00000029063)	pnocb (ENSPNAG00000029078)	znf395b (ENSPNAG00000029097)	paqr8 (ENSPNAG00000004508) #21	mcm3 (ENSPNAG00000029681) #22	il17a/f3 (ENSPNAG00000029698) #23	stmn4 (ENSPNAG00000029705)	emilin1a (ENSPNAG00000029714)	ankef1a (ENSPNAG00000029721)	snap25a (ENSPNAG00000029735)	sccpdhb (ENSPNAG00000029744)	cnstb (ENSPNAG00000029747)	ENSPNAG00000009749
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	472													ENSEEEG00000000808	ENSEEEG00000000788	si:ch211-191a24.4 (ENSEEEG00000000775)	mcm3l (ENSEEEG00000000725) #22	ENSEEEG00000000710	TRAPPC8 (ENSEEEG00000000589)	b4galt6 (ENSEEEG00000000494)	ttr (ENSEEEG00000000474)	ENSEEEG00000000451	ENSEEEG00000000422	ENSEEEG00000000392	ENSEEEG00000000375	dsc2l (ENSEEEG00000000365)	si:dkey-5n18.1 (ENSEEEG00000000356)
Electric eel	MODERN SPECIES	250		cbr4 (ENSEEEG00000005123)	TRMT1L (ENSEEEG00000005125)	niban1a (ENSEEEG00000005136)	kifap3a (ENSEEEG00000005154)	ntmt2 (ENSEEEG00000005199)	gorab (ENSEEEG00000005215)	prrx1b (ENSEEEG00000005218)	ENSEEEG00000005222	slc25a24 (ENSEEEG00000005231)	elp3 (ENSEEEG00000005247)	si:ch211-63o20.7 (ENSEEEG00000005417)	pnocb (ENSEEEG00000005418)	znf395b (ENSEEEG00000005419)	paqr8 (ENSEEEG00000005421) #21	mcm3 (ENSEEEG00000005426) #22	il17a/f3 (ENSEEEG00000005440) #23	stmn4 (ENSEEEG00000005443)	emilin1a (ENSEEEG00000005444)	ankef1a (ENSEEEG00000005449)	snap25a (ENSEEEG00000005459)	ENSEEEG00000005526	hnrnpub (ENSEEEG00000005540)	lft1 (ENSEEEG00000005622)	cdc42bpab (ENSEEEG00000005658)	ENSEEEG00000006157	fzd3a (ENSEEEG00000006159)	fbxo16 (ENSEEEG00000006160)	fam49a (ENSEEEG00000006173)	vsnl1a (ENSEEEG00000006572)	sf3b6 (ENSEEEG00000006573)
Cyprinoidei	ANCESTRAL SPECIES	334															ENSGT00940000159860.e #21	ENSGT01050000244824.B #22	ENSGT00940000156618.c.a #23
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	12	dsc2l (ENSDARG00000039677)	bsnd (ENSDARG00000086265)	si:dkeyp-51f12.3 (ENSDARG00000091904)	si:dkeyp-51f12.2 (ENSDARG00000095606)	dhcr24 (ENSDARG00000013236)	ENSDARG00000028541	ENSDARG00000034707	si:ch211-121a2.2 (ENSDARG00000039682)	sirt5 (ENSDARG00000039684)	adcy1a (ENSDARG00000069026)	igfbp1a (ENSDARG00000099351)	igfbp3 (ENSDARG00000099144)	ENSDARG00000031911	ENSDARG00000095654	si:ch211-191a24.4 (ENSDARG00000037528)	mcm3l (ENSDARG00000037532) #22	mep1ba (ENSDARG00000037533)	TRAPPC8 (ENSDARG00000038866)	opn7a (ENSDARG00000024208)	b4galt6 (ENSDARG00000010301)	ttr (ENSDARG00000037191)	pum2 (ENSDARG00000061040)	tshr (ENSDARG00000037195)	cep128 (ENSDARG00000103771)	nrxn3b (ENSDARG00000062693)	snw1 (ENSDARG00000091563)	sptlc2b (ENSDARG00000074287)	ism2b (ENSDARG00000053859)	cyp46a1.3 (ENSDARG00000089177)	cyp46a1.4 (ENSDARG00000113820)	cyp46a1.2 (ENSDARG00000004262)
Zebrafish	MODERN SPECIES	12	ENSDARG00000094010	ENSDARG00000079036	TRMT1L (ENSDARG00000042057)	niban1a (ENSDARG00000042055)	kifap3a (ENSDARG00000008639)	ntmt2 (ENSDARG00000042033)	gorab (ENSDARG00000042031)	prrx1b (ENSDARG00000042027)	ENSDARG00000054723	slc25a24 (ENSDARG00000008568)	elp3 (ENSDARG00000042005)	si:ch211-63o20.7 (ENSDARG00000042000)	pnocb (ENSDARG00000024189)	znf395b (ENSDARG00000024195)	paqr8 (ENSDARG00000088828) #21	mcm3 (ENSDARG00000024204) #22	stmn4 (ENSDARG00000030106)	il17a/f3 (ENSDARG00000041976) #23	emilin1a (ENSDARG00000024537)	ankef1a (ENSDARG00000019135)	snap25a (ENSDARG00000020609)	sccpdhb (ENSDARG00000024564)	cnstb (ENSDARG00000042759)	ENSDARG00000024575	hnrnpub (ENSDARG00000004735)	lft1 (ENSDARG00000019920)	cdc42bpab (ENSDARG00000016464)	fbxo16 (ENSDARG00000033949)	fzd3a (ENSDARG00000021664)	fam49a (ENSDARG00000006672)	vsnl1a (ENSDARG00000023228)
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	339						ENSGT00390000014886.j	ENSGT00940000159466.d.c.b	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b.a.b	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a #21	ENSGT01050000244824.B.db.a #22	ENSGT00940000156618.c.a.b #23	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n	ENSGT00390000005861.a.b	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.a
Goldfish	MODERN SPECIES	12	lratd1 (ENSCARG00000005899)	rnaseh1 (ENSCARG00000005871)	rps7 (ENSCARG00000005846)	allc (ENSCARG00000005816)	ntmt2 (ENSCARG00000005808)	gorab (ENSCARG00000005799)	prrx1b (ENSCARG00000005769)	ENSCARG00000005760	ENSCARG00000005722	slc25a24 (ENSCARG00000005688)	elp3 (ENSCARG00000005669)	si:ch211-63o20.7 (ENSCARG00000005660)	pnocb (ENSCARG00000005656)	znf395b (ENSCARG00000005649)	paqr8 (ENSCARG00000005646) #21	mcm3 (ENSCARG00000005596) #22	il17a/f3 (ENSCARG00000005581) #23	stmn4 (ENSCARG00000005572)	emilin1a (ENSCARG00000005563)	ankef1a (ENSCARG00000005555)	snap25a (ENSCARG00000005536)	sccpdhb (ENSCARG00000005286)	cnstb (ENSCARG00000005271)	ENSCARG00000005266	hnrnpub (ENSCARG00000004898)	lft1 (ENSCARG00000004860)	cdc42bpab (ENSCARG00000003756)	fzd3a (ENSCARG00000003670)	ENSCARG00000003651	fam49a (ENSCARG00000035535)	vsnl1a (ENSCARG00000035506)
Cyprininae_a	ANCESTRAL SPECIES	323								ENSGT00390000014886.j	ENSGT00940000159466.d.c.b	ENSGT00940000164927.a.b	ENSGT00390000013141.b	ENSGT00940000166937.a	ENSGT00950000183149.C.b.d	ENSGT00940000157136.b.a	ENSGT00940000159860.e.a #21	ENSGT01050000244824.B.db.a #22	ENSGT00940000156618.c.a.b #23	ENSGT01030000234597.a.b.a.b.f	ENSGT01030000234633.A.a.b.b	ENSGT00940000156852.d.a	ENSGT00950000182843.a.a.a.b.a.a.a.a	ENSGT00390000004799.n	ENSGT00390000005861.a.b	ENSGT00940000159075.B.j.a	ENSGT00940000156546.`b.a.b	ENSGT00390000010056.b.d	ENSGT01030000234517.H.b.k.a	ENSGT00940000156491.a.d.a.b	ENSGT00940000159021.b	ENSGT00390000015159.a.b.c.b.a.a	ENSGT00940000156513.a.b.b.b
Common carp reference	MODERN SPECIES	34	ENSCCRG00000079211	TRMT1L (ENSCCRG00000022240)	niban1a (ENSCCRG00000022247)	kifap3a (ENSCCRG00000022274)	ntmt2 (ENSCCRG00000022893)	gorab (ENSCCRG00000055088)	prrx1b (ENSCCRG00000076310)	ENSCCRG00000030163	ENSCCRG00000047315	slc25a24 (ENSCCRG00000047317)	elp3 (ENSCCRG00000047319)	si:ch211-63o20.7 (ENSCCRG00000054786)	pnocb (ENSCCRG00000059629)	znf395b (ENSCCRG00000005473)	paqr8 (ENSCCRG00000072910) #21	mcm3 (ENSCCRG00000005245) #22	il17a/f3 (ENSCCRG00000067104) #23	stmn4 (ENSCCRG00000074692)	emilin1a (ENSCCRG00000075193)	ankef1a (ENSCCRG00000034142)	ENSCCRG00000057731	sccpdhb (ENSCCRG00000003293)	cnstb (ENSCCRG00000061873)	ENSCCRG00000023045	hnrnpub (ENSCCRG00000023049)	lft1 (ENSCCRG00000010540)	cdc42bpab (ENSCCRG00000033766)	fzd3a (ENSCCRG00000050984)	fbxo16 (ENSCCRG00000011349)	fam49a (ENSCCRG00000050994)	vsnl1a (ENSCCRG00000059197)
Golden-line barbel	MODERN SPECIES	472	PLA2G4A (ENSSGRG00000042480)	arpc5b (ENSSGRG00000042479)	HMCN1 (ENSSGRG00000042464)	ivns1abpa (ENSSGRG00000042195)	TRMT1L (ENSSGRG00000042192)	niban1a (ENSSGRG00000042191)	kifap3a (ENSSGRG00000042116)	gorab (ENSSGRG00000042113)	prrx1b (ENSSGRG00000042108)	slc25a24 (ENSSGRG00000042056)	elp3 (ENSSGRG00000041972)	si:ch211-63o20.7 (ENSSGRG00000041959)	pnocb (ENSSGRG00000041957)	znf395b (ENSSGRG00000041956)	paqr8 (ENSSGRG00000041955) #21	mcm3 (ENSSGRG00000041541) #22	il17a/f3 (ENSSGRG00000041534) #23	stmn4 (ENSSGRG00000041532)	emilin1a (ENSSGRG00000041528)	ankef1a (ENSSGRG00000041525)	SNAP25 (ENSSGRG00000041520)	sccpdhb (ENSSGRG00000041516)	cnstb (ENSSGRG00000041514)	ENSSGRG00000041512	hnrnpub (ENSSGRG00000041491)	lft1 (ENSSGRG00000041489)	cdc42bpab (ENSSGRG00000034778)	fzd3a (ENSSGRG00000034722)	fbxo16 (ENSSGRG00000034720)	fam49a (ENSSGRG00000034659)	vsnl1a (ENSSGRG00000034656)
Cyprininae	ANCESTRAL SPECIES	58	ENSGT00940000155635.u.b	ENSGT00390000001254.e	ENSGT00530000063646.a.c	ENSGT00940000154149.b.a.g.b.a	ENSGT00390000003574.a.b	ENSGT00390000008371.a.e	ENSGT00390000014886.i	ENSGT00940000159466.d.c.a	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT00940000159860.e.b #21	ENSGT01050000244824.B.db.b #22	ENSGT00940000156618.c.a.a #23	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a	ENSGT00940000156513.a.b.b.a.a	ENSGT00390000005908.b.b	ENSGT00940000159049.a.a
Cyprininae_a	ANCESTRAL SPECIES	257	ENSGT00940000154149.b.a.g.b.a	ENSGT00390000003574.a.b	ENSGT00390000008371.a.e	ENSGT00390000008371.a.f	ENSGT00390000014886.i	ENSGT00940000159466.d.c.a	ENSGT00950000183190.a.a.a.b	ENSGT00950000183190.a.a.b.c.b.a.b	ENSGT00950000183190.a.a.b.c.b.b	ENSGT00950000183190.a.a.b.c.b.a.a	ENSGT00940000164927.a.a	ENSGT00390000013141.a	ENSGT00940000166937.b	ENSGT00950000183149.C.b.c	ENSGT00940000157136.b.b	ENSGT01050000244824.B.db.b #22	ENSGT00940000156618.c.a.a #23	ENSGT01030000234597.a.b.a.b.e	ENSGT01030000234633.A.a.b.a	ENSGT00940000156852.d.b	ENSGT00390000005861.a.a	ENSGT00940000159075.B.j.b	ENSGT00940000156546.`b.a.a	ENSGT00390000010056.b.c	ENSGT01030000234517.H.b.k.b	ENSGT00940000156491.a.d.a.a	ENSGT00940000159021.a	ENSGT00390000015159.a.b.c.a
Golden-line barbel	MODERN SPECIES	259	arpc5b (ENSSGRG00000036499)	ivns1abpa (ENSSGRG00000036336)	ENSSGRG00000036329	TRMT1L (ENSSGRG00000036324)	kifap3a (ENSSGRG00000036160)	ntmt2 (ENSSGRG00000036153)	ENSSGRG00000036151	prrx1b (ENSSGRG00000036137)	ENSSGRG00000036134	ENSSGRG00000036130	slc25a24 (ENSSGRG00000036074)	elp3 (ENSSGRG00000035922)	si:ch211-63o20.7 (ENSSGRG00000035921)	pnocb (ENSSGRG00000035920)	znf395b (ENSSGRG00000035919)	mcm3 (ENSSGRG00000034715) #22	il17a/f3 (ENSSGRG00000034707) #23	stmn4 (ENSSGRG00000034706)	emilin1a (ENSSGRG00000034705)	ENSSGRG00000034703	snap25a (ENSSGRG00000034697)	cnstb (ENSSGRG00000034696)	sccpdhb (ENSSGRG00000034695)	cnstb (ENSSGRG00000034694)	hnrnpub (ENSSGRG00000034693)	lft1 (ENSSGRG00000034692)	cdc42bpab (ENSSGRG00000033401)	fzd3a (ENSSGRG00000033390)	fbxo16 (ENSSGRG00000033389)	fam49a (ENSSGRG00000033378)	ENSSGRG00000033377
Common carp reference	MODERN SPECIES	28	arpc5b (ENSCCRG00000074120)	HMCN1 (ENSCCRG00000021811)	ivns1abpa (ENSCCRG00000028200)	ENSCCRG00000028194	niban1a (ENSCCRG00000027491)	kifap3a (ENSCCRG00000023708)	ntmt2 (ENSCCRG00000037004)	gorab (ENSCCRG00000023654)	prrx1b (ENSCCRG00000071513)	ENSCCRG00000069171	ENSCCRG00000070865	slc25a24 (ENSCCRG00000062518)	elp3 (ENSCCRG00000007703)	si:ch211-63o20.7 (ENSCCRG00000066954)	znf395b (ENSCCRG00000007688)	mcm3 (ENSCCRG00000020414) #22	il17a/f3 (ENSCCRG00000078734) #23	stmn4 (ENSCCRG00000068496)	emilin1a (ENSCCRG00000056865)	ankef1a (ENSCCRG00000032559)	snap25a (ENSCCRG00000034090)	sccpdhb (ENSCCRG00000009379)	cnstb (ENSCCRG00000078235)	ENSCCRG00000009391	hnrnpub (ENSCCRG00000009415)	lft1 (ENSCCRG00000023109)	cdc42bpab (ENSCCRG00000010550)	fzd3a (ENSCCRG00000011341)	fbxo16 (ENSCCRG00000050979)	ENSCCRG00000050960	ENSCCRG00000022773
Goldfish	MODERN SPECIES	39	ivns1abpa (ENSCARG00000068328)	TRMT1L (ENSCARG00000068128)	niban1a (ENSCARG00000068067)	ENSCARG00000068062	kifap3a (ENSCARG00000067962)	ntmt2 (ENSCARG00000067920)	gorab (ENSCARG00000067913)	prrx1b (ENSCARG00000067889)	ENSCARG00000067854	slc25a24 (ENSCARG00000067716)	elp3 (ENSCARG00000067485)	si:ch211-63o20.7 (ENSCARG00000067453)	pnocb (ENSCARG00000067449)	znf395b (ENSCARG00000067406)	paqr8 (ENSCARG00000067389) #21	mcm3 (ENSCARG00000066540) #22	il17a/f3 (ENSCARG00000066446) #23	moxd1 (ENSCARG00000066358)	ccn2a (ENSCARG00000066342)	itsn2a (ENSCARG00000066063)	mrpl19 (ENSCARG00000066000)	pfas (ENSCARG00000065577)	ENSCARG00000065543	hook1 (ENSCARG00000063593)	cyp2n13 (ENSCARG00000063137)	cyp2ad2 (ENSCARG00000063089)	cyp2v1 (ENSCARG00000062887)	ENSCARG00000062027	paics (ENSCARG00000061075)	ppat (ENSCARG00000060856)	si:dkeyp-117h8.4 (ENSCARG00000060837)
Cyprininae	ANCESTRAL SPECIES	318	ENSGT00940000156945.a	ENSGT00940000156450.c.d	ENSGT00390000005889.b	ENSGT00940000159474.d	ENSGT00490000043472.c	ENSGT01060000249130	ENSGT00390000008338.b	ENSGT00390000016298.b.a	ENSGT01090000260029.a.a.b.a.b.c.a	ENSGT00940000156080.l.d	ENSGT00940000154872.B.d	ENSGT00940000157394.a.d	ENSGT00940000158092.o.g	ENSGT00940000163886.A.a.a.a.a	ENSGT00950000183102.A.b.a.h	ENSGT01050000244824.B.eb #22	ENSGT00950000183111.b.a.b.c	ENSGT00950000183111.b.a.b.d.a.a.b	ENSGT00950000182909.b.a.a.db	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT01050000245154	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f
Goldfish	MODERN SPECIES	39	ENSCARG00000015644	ENSCARG00000015641	bloc1s2 (ENSCARG00000015630)	USP24 (ENSCARG00000015610)	PCSK9 (ENSCARG00000015590)	dhcr24 (ENSCARG00000015547)	ENSCARG00000015539	ENSCARG00000015533	sirt5 (ENSCARG00000015491)	adcy1a (ENSCARG00000015415)	igfbp1a (ENSCARG00000015366)	IGFBP-1 (ENSCARG00000015357)	igfbp3 (ENSCARG00000015348)	ENSCARG00000015336	si:ch211-191a24.4 (ENSCARG00000015328)	mcm3l (ENSCARG00000013461) #22	ENSCARG00000045730	TRAPPC8 (ENSCARG00000038100)	opn7a (ENSCARG00000037789)	ENSCARG00000037753	ENSCARG00000037719	b4galt6 (ENSCARG00000037298)	ENSCARG00000037188	ENSCARG00000037151	ENSCARG00000036994	dsc2l (ENSCARG00000036912)	ENSCARG00000036893	cdh2 (ENSCARG00000032339)	aqp4 (ENSCARG00000032153)	ENSCARG00000032139	psma8 (ENSCARG00000032090)
Cyprininae_a	ANCESTRAL SPECIES	34		ENSGT00390000005889.b	ENSGT00940000159474.d	ENSGT00490000043472.c	ENSGT01060000249130	ENSGT00390000008338.b	ENSGT00390000016298.b.a	ENSGT01090000260029.a.a.b.a.b.c.a	ENSGT00940000156080.l.d	ENSGT00940000154872.B.d	ENSGT00940000157394.a.d	ENSGT00940000158092.o.g	ENSGT00940000156328.a.b	ENSGT00940000163886.A.a.a.a.a	ENSGT00950000183102.A.b.a.h	ENSGT01050000244824.B.eb #22	ENSGT00950000182909.b.a.a.db.a	ENSGT00390000000568.j	ENSGT01100000263524.B.b.b.d	ENSGT01090000260029.a.b.b.b.a.a.a.b.c	ENSGT00940000158019.e.b	ENSGT00940000153229.A.a.b.db	ENSGT01030000234624.b.b.c.a.a.u.a	ENSGT01030000234624.b.b.c.a.b.b	ENSGT01030000234624.a.g	ENSGT00940000155981.h.h	ENSGT00940000156037.a.e.e	ENSGT00510000049120.h.b	ENSGT00940000156453.b.l	ENSGT00390000011620.a.a.a.f	ENSGT00940000160354.k
Common carp reference	MODERN SPECIES	28	PRKAA2 (ENSCCRG00000019855)	PLPP3 (ENSCCRG00000070026)	USP24 (ENSCCRG00000002958)	ENSCCRG00000037022	PCSK9 (ENSCCRG00000002872)	dhcr24 (ENSCCRG00000009491)	ENSCCRG00000077673	ENSCCRG00000064046	sirt5 (ENSCCRG00000068878)	adcy1a (ENSCCRG00000033894)	igfbp3 (ENSCCRG00000082123)	igfbp1a (ENSCCRG00000078979)	ENSCCRG00000061058	ENSCCRG00000035329	si:ch211-191a24.4 (ENSCCRG00000035332)	mcm3l (ENSCCRG00000024357) #22	ENSCCRG00000082763	TRAPPC8 (ENSCCRG00000006394)	opn7a (ENSCCRG00000080477)	ENSCCRG00000054103	ENSCCRG00000012674	b4galt6 (ENSCCRG00000055122)	ttr (ENSCCRG00000069752)	ENSCCRG00000079988	ENSCCRG00000025894	ENSCCRG00000025887	cdh2 (ENSCCRG00000033391)	AQP4 (ENSCCRG00000057730)	ENSCCRG00000058327	ENSCCRG00000062827	psma8 (ENSCCRG00000000585)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	694												adcy1a (ENSSGRG00000010610)	igfbp1a (ENSSGRG00000010602)	igfbp3 (ENSSGRG00000010600)	si:ch211-191a24.4 (ENSSGRG00000010587)	mcm3l (ENSSGRG00000010433) #22	ENSSGRG00000010418	TRAPPC8 (ENSSGRG00000009013)	opn7a (ENSSGRG00000008999)	ENSSGRG00000008998	ttr (ENSSGRG00000008996)	ENSSGRG00000008993	ENSSGRG00000008991	alad (ENSSGRG00000008799)	tmem203 (ENSSGRG00000008796)	ENSSGRG00000008795	ssna1 (ENSSGRG00000008794)	ENSSGRG00000007833	ENSSGRG00000007784
Golden-line barbel	MODERN SPECIES	34	dab1a (ENSSGRG00000054161)	PRKAA2 (ENSSGRG00000054139)	PLPP3 (ENSSGRG00000054134)	bloc1s2 (ENSSGRG00000054129)	USP24 (ENSSGRG00000054118)	dhcr24 (ENSSGRG00000054096)	ENSSGRG00000054095	ENSSGRG00000054094	sirt5 (ENSSGRG00000054005)	adcy1a (ENSSGRG00000054004)	igfbp1a (ENSSGRG00000054003)	igfbp3 (ENSSGRG00000054002)	ENSSGRG00000054001	ENSSGRG00000054000	si:ch211-191a24.4 (ENSSGRG00000053998)	mcm3l (ENSSGRG00000053997) #22	mep1ba (ENSSGRG00000053996)	mep1ba (ENSSGRG00000053995)
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	3090																ENSCMIG00000004636 #22
Elephant shark	MODERN SPECIES	2403																ENSCMIG00000006466 #22	ENSCMIG00000006471
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Lamprey	MODERN SPECIES	5523																mcm3 (ENSPMAG00000007367) #22
Hagfish	MODERN SPECIES	911																mcm3l (ENSEBUG00000007856) #22	ENSEBUG00000010493 ##9	ENSEBUG00000001443	ENSEBUG00000014616	ENSEBUG00000014359	elovl2 (ENSEBUG00000005653) ##8
Ciona	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Ciona intestinalis	MODERN SPECIES	22	ENSCING00000022933	ENSCING00000001249	nodal (ENSCING00000001251)	ENSCING00000001256	ENSCING00000014932	ENSCING00000014934	ENSCING00000022708	ENSCING00000014936	ENSCING00000014937	ENSCING00000024002	ENSCING00000025130	ENSCING00000001246	ENSCING00000014922	ENSCING00000001260	ENSCING00000023554	ENSCING00000001519 #22	ENSCING00000014740	ENSCING00000024449	ENSCING00000014739	ENSCING00000014738	ENSCING00000019388	ENSCING00000000262
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01050000244824.B #22
Caenorhabditis elegans	MODERN SPECIES	5	C01G10.5 (WBGene00007232)	C01G10.18 (WBGene00077583)	C01G10.6 (WBGene00007233)	C01G10.15 (WBGene00007240)	C01G10.7 (WBGene00007234)	ahsa-1 (WBGene00007235)	C01G10.9 (WBGene00007236)	C01G10.10 (WBGene00007237)	unc-76 (WBGene00006808)	dnj-3 (WBGene00001021)	C25D7.10 (WBGene00007720)	otub-1 (WBGene00007718)	C25D7.9 (WBGene00007719)	rap-2 (WBGene00004308)	C25D7.15 (WBGene00007722)	mcm-3 (WBGene00003155) #22	C25D7.16 (WBGene00050940)	C25D7.5 (WBGene00007717)	fbxa-82 (WBGene00007716)	sdc-3 (WBGene00004747)	C25D7.1 (WBGene00007714)	F14H8.8 (WBGene00077582)	cng-1 (WBGene00000562)	F14H8.4 (WBGene00008834)	F14H8.5 (WBGene00008835)	F14H8.2 (WBGene00008833)	obr-2 (WBGene00008832)	nmr-2 (WBGene00003775)	hrde-2 (WBGene00011324)	mut-15 (WBGene00011323)	fib-1 (WBGene00001423)
Fruitfly	MODERN SPECIES	26	rg (FBgn0266098)	CG15465 (FBgn0029746)	Rpn13R (FBgn0029745)	CG5062 (FBgn0029747)	CG42749 (FBgn0261803)	CG3323 (FBgn0029750)	CG17764 (FBgn0029751)	Cdk7 (FBgn0263237)	snf (FBgn0003449)	TrxT (FBgn0029752)	dhd (FBgn0011761)	CG4198 (FBgn0029753)	CG15930 (FBgn0029754)	Sas10 (FBgn0029755)	Rnp4F (FBgn0014024)	Mcm3 (FBgn0284442) #22	CG3309 (FBgn0029756)	XRCC1 (FBgn0026751)	CanB (FBgn0010014)	SK (FBgn0029761)	NAAT1 (FBgn0029762)	spoon (FBgn0263987)	Usp16-45 (FBgn0029763)	CG16756 (FBgn0029765)	CG15784 (FBgn0029766)	SPR (FBgn0029768)	frma (FBgn0029769)	CG32762 (FBgn0052762)	CG4151 (FBgn0029770)	CG12730 (FBgn0029771)	Vsx2 (FBgn0263512)
Yeast	MODERN SPECIES	6	GLY1 (YEL046C)	YEL045C	IES6 (YEL044W)	YEL043W	GDA1 (YEL042W)	YEF1 (YEL041W)	UTR2 (YEL040W)	CYC7 (YEL039C)	UTR4 (YEL038W)	RAD23 (YEL037C)	ANP1 (YEL036C)	UTR5 (YEL035C)	YEL034C-A	HYP2 (YEL034W)	MTC7 (YEL033W)	MCM3 (YEL032W) #22	YEL032C-A	SPF1 (YEL031W)	YEL030C-A	ECM10 (YEL030W)	BUD16 (YEL029C)	YEL028W	VMA3 (YEL027W)	SNU13 (YEL026W)	YEL025C	RIP1 (YEL024W)	YEL023C	GEA2 (YEL022W)	URA3 (YEL021W)	YEL020C-B	TIM9 (YEL020W-A)
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Bilateria	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Elephant shark	MODERN SPECIES	2571																mcm7 (ENSCMIG00000002146) ##22
Euteleostomi	ANCESTRAL SPECIES	151												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000154419	ENSGT00940000157637.b	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00940000165960	ENSGT01030000234590.B.a.a	ENSGT00390000016193
Sarcopterygii	ANCESTRAL SPECIES	220												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419	ENSGT00940000157637.b	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184
Coelacanth	MODERN SPECIES	2305																MCM7 (ENSLACG00000004571) ##22	COPS6 (ENSLACG00000005968)	ENSLACG00000006584	ENSLACG00000006806	KDM6B (ENSLACG00000007080)
Tetrapoda	ANCESTRAL SPECIES	102	ENSGT00390000016398	ENSGT01030000234582.f.b.g	ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000014072.B	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182866.D.d.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419.b	ENSGT00940000157637.b	ENSGT01030000234621.D	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000155191.b	ENSGT00730000111225	ENSGT00390000010184	ENSGT00940000158661	ENSGT00940000158058
Anura	ANCESTRAL SPECIES	131	ENSGT00390000016398	ENSGT01030000234582.f.b.g	ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT01030000234590.B.a.a.c	ENSGT01030000234590.B.a.a.d	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182866.D.d.b.v	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b
Leishan spiny toad	MODERN SPECIES	6	TRAPPC14 (ENSLLEG00000009041)	ENSLLEG00000009268	ENSLLEG00000009310	LAMTOR4 (ENSLLEG00000009384)	ENSLLEG00000009557	ENSLLEG00000009662	ENSLLEG00000009762	ENSLLEG00000010094	MBLAC1 (ENSLLEG00000010144)	TAF6 (ENSLLEG00000010172)	ENSLLEG00000010279	ENSLLEG00000010387	ENSLLEG00000010503	ENSLLEG00000010592	AP4M1 (ENSLLEG00000011053)	MCM7 (ENSLLEG00000011294) ##22	COPS6 (ENSLLEG00000012169)	ENSLLEG00000012403	ENSLLEG00000012435	ENSLLEG00000012454	ENSLLEG00000012471	ENSLLEG00000012486	ENSLLEG00000012548	ENSLLEG00000012587	ENSLLEG00000012606	ENSLLEG00000012635	ENSLLEG00000012653	ENSLLEG00000012671	ENSLLEG00000012687	ENSLLEG00000012746	ENSLLEG00000012802
Frog	MODERN SPECIES	3	ENSXETG00000043171	ENSXETG00000004010	mblac1 (ENSXETG00000035787)	XB5899916 [provisional:tm4sf5] (ENSXETG00000004007)	XB5845012 [provisional:tm4sf5] (ENSXETG00000033523)	XB5722075 [provisional] (ENSXETG00000043055)	ENSXETG00000043331	lamtor4 (ENSXETG00000043065)	trappc14 (ENSXETG00000048365)	gal3st4.1 (ENSXETG00000048441)	gal3st4.2 (ENSXETG00000033044)	ENSXETG00000037425	gpc2 (ENSXETG00000046948)	stag3 (ENSXETG00000004001)	ap4m1 (ENSXETG00000009105)	mcm7 (ENSXETG00000009104) ##22	cops6 (ENSXETG00000009101)	ENSXETG00000043396	sia3 (ENSXETG00000046444)	sia1 (ENSXETG00000009100)	ENSXETG00000038906	sia2 (ENSXETG00000030966)	ENSXETG00000045320	snapc2 (ENSXETG00000043778)	aurkb (ENSXETG00000009097)	vamp2 (ENSXETG00000044343)	ENSXETG00000047344	ENSXETG00000042128	per1 (ENSXETG00000009086)	tmem107 (ENSXETG00000031858)	esr-5 (ENSXETG00000046076)
Amniota	ANCESTRAL SPECIES	78	ENSGT00940000162489	ENSGT01090000261072	ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000014072.B	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182866.D.d.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000154419.a	ENSGT00940000157637.b
Mammalia	ANCESTRAL SPECIES	112	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b
Theria	ANCESTRAL SPECIES	32	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT01030000234576.D.a.b.b.a.a.a
Marsupialia	ANCESTRAL SPECIES	22	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b.lb	ENSGT01030000234576.D.a.b.b.a.a.a.b	ENSGT00940000162162.b.b	ENSGT00940000161592.j	ENSGT00940000165702	ENSGT00940000154461	ENSGT00940000154294	ENSGT01030000234669.A.h	ENSGT01090000260018.D	ENSGT01090000260018.A.a.b	ENSGT00940000160338	ENSGT00910000144115.b.k.b	ENSGT00530000063632.B	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b
Marsupialia_b	ANCESTRAL SPECIES	25	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b.lb	ENSGT01030000234576.D.a.b.b.a.a.a.b	ENSGT00940000161592.j	ENSGT00940000165702	ENSGT00940000154461	ENSGT00940000154294	ENSGT01030000234669.A.h	ENSGT01090000260018.D	ENSGT01090000260018.A.a.b	ENSGT00940000160338	ENSGT00910000144115.b.k.b	ENSGT00530000063632.B	ENSGT01100000263486.a.b.a.a.a.a.a.b.a.b.a.a.b	ENSGT01100000263486.a.b.a.a.a.a.a.a.b
Diprotodontia	ANCESTRAL SPECIES	78	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000161592.j	ENSGT00940000165702	ENSGT00940000154461.dc	ENSGT00940000154294	ENSGT01030000234669.A.h	ENSGT01090000260018.D
Diprotodontia_a	ANCESTRAL SPECIES	73	ENSGT00970000197711	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400.m	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b.b	ENSGT00940000162162.b.b.b	ENSGT00940000161592.j	ENSGT00940000165702	ENSGT00940000154461.dc	ENSGT00940000154294	ENSGT01030000234669.A.h	ENSGT01090000260018.D
Common wonbat	MODERN SPECIES	301	ACTL6B (ENSVURG00010000628)	TFR2 (ENSVURG00010000607)	PCOLCE (ENSVURG00010000578)	FBXO24 (ENSVURG00010000469)	LRCH4 (ENSVURG00010000378)	ENSVURG00010000361	ENSVURG00010000348	AGFG2 (ENSVURG00010000332)	ENSVURG00010000323	ENSVURG00010000305	ENSVURG00010000288	ENSVURG00010000267	CNPY4 (ENSVURG00010000253)	TAF6 (ENSVURG00010000237)	AP4M1 (ENSVURG00010000165)	MCM7 (ENSVURG00010000088) ##22	COPS6 (ENSVURG00010019994)	ENSVURG00010019987	ENSVURG00010019982	ZKSCAN1 (ENSVURG00010019975)	ENSVURG00010019966	RACK1 (ENSVURG00010019944)	ENSVURG00010019931	TRIM7 (ENSVURG00010019922)	ENSVURG00010019914	ENSVURG00010019911
koala	MODERN SPECIES	366	ENSPCIG00000000301	AGFG2 (ENSPCIG00000000212)	NYAP1 (ENSPCIG00000000186)	TSC22D4 (ENSPCIG00000000142)	ENSPCIG00000012287	MEPCE (ENSPCIG00000012285)	ENSPCIG00000012277	STAG3 (ENSPCIG00000031260)	GPC2 (ENSPCIG00000012268)	GAL3ST4 (ENSPCIG00000012267)	TRAPPC14 (ENSPCIG00000012266)	LAMTOR4 (ENSPCIG00000012264)	CNPY4 (ENSPCIG00000033605)	TAF6 (ENSPCIG00000012242)	AP4M1 (ENSPCIG00000012241)	MCM7 (ENSPCIG00000012240) ##22	COPS6 (ENSPCIG00000012239)	ENSPCIG00000012238	ENSPCIG00000012237	ENSPCIG00000012236	ENSPCIG00000012235	ENSPCIG00000012231	ENSPCIG00000012229	TRIM7 (ENSPCIG00000000980)	ENSPCIG00000001020	ENSPCIG00000034201	ENSPCIG00000037152
Wallaby	MODERN SPECIES	7604													CNPY4 (ENSMEUG00000011053)	TAF6 (ENSMEUG00000011033)	AP4M1 (ENSMEUG00000011019)	MCM7 (ENSMEUG00000010996) ##22	COPS6 (ENSMEUG00000010978)
Tasmanian devil	MODERN SPECIES	3	PCOLCE (ENSSHAG00000009152)	ENSSHAG00000009335	LRCH4 (ENSSHAG00000029259)	ENSSHAG00000027994	AGFG2 (ENSSHAG00000000700)	NYAP1 (ENSSHAG00000009909)	TSC22D4 (ENSSHAG00000010016)	ENSSHAG00000010603	MEPCE (ENSSHAG00000030403)	ENSSHAG00000031293	STAG3 (ENSSHAG00000010619)	TRAPPC14 (ENSSHAG00000011235)	LAMTOR4 (ENSSHAG00000025304)	CNPY4 (ENSSHAG00000023094)	AP4M1 (ENSSHAG00000028001)	MCM7 (ENSSHAG00000029246) ##22	COPS6 (ENSSHAG00000011684)	ZNF3 (ENSSHAG00000011938)	ENSSHAG00000030879	ENSSHAG00000012439	ENSSHAG00000012687	ENSSHAG00000012892	ENSSHAG00000027999	ENSSHAG00000025476	ENSSHAG00000000638	ENSSHAG00000025316	ENSSHAG00000022269	ENSSHAG00000026791	ENSSHAG00000000585	ENSSHAG00000026903	ENSSHAG00000029410
Opossum	MODERN SPECIES	1	ENSMODG00000046871	AGFG2 (ENSMODG00000004515)	NYAP1 (ENSMODG00000004503)	TSC22D4 (ENSMODG00000004468)	ENSMODG00000025680	MEPCE (ENSMODG00000004457)	ENSMODG00000046013	STAG3 (ENSMODG00000004440)	GPC2 (ENSMODG00000004412)	GAL3ST4 (ENSMODG00000004375)	TRAPPC14 (ENSMODG00000004355)	LAMTOR4 (ENSMODG00000004302)	CNPY4 (ENSMODG00000004296)	TAF6 (ENSMODG00000004286)	AP4M1 (ENSMODG00000004264)	MCM7 (ENSMODG00000004229) ##22	ENSMODG00000004170	ZNF3 (ENSMODG00000004159)	ENSMODG00000050533	ENSMODG00000028855	ZKSCAN1 (ENSMODG00000004145)	ENSMODG00000004101	RACK1 (ENSMODG00000004091)	ENSMODG00000003964	TRIM7 (ENSMODG00000003934)	ENSMODG00000003901	ENSMODG00000036746	ENSMODG00000037511	HIST1H4I (ENSMODG00000048847)	HIST1H4I (ENSMODG00000044280)	HIST1H4I (ENSMODG00000039062)
Eutheria	ANCESTRAL SPECIES	22	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000154740.a.a.c.b
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299	ENSGT00940000154740.a.a.c.b
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299	ENSGT00940000162347
Primates	ANCESTRAL SPECIES	11	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299	ENSGT00940000162347
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a.a	ENSGT00950000182958.a.b.b.i.a.b	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT00940000154173.A	ENSGT01100000263517.b.d.m.b.a.a.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00950000182958.a.b.b.i.a.b	ENSGT00950000182958.a.b.b.i.a.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441
Lemuriformes_a	ANCESTRAL SPECIES	16	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT00940000154173.A	ENSGT01100000263517.b.d.m.b.a.a.d	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00950000182958.a.b.b.i.a.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024
Greater bamboo lemur	MODERN SPECIES	1493	TSC22D4 (ENSPSMG00000001573)	PPP1R35 (ENSPSMG00000001550)	MEPCE (ENSPSMG00000001523)	ZCWPW1 (ENSPSMG00000001508)	ENSPSMG00000001444	PVRIG (ENSPSMG00000001430)	STAG3 (ENSPSMG00000001388)	GPC2 (ENSPSMG00000001316)	GAL3ST4 (ENSPSMG00000001300)	TRAPPC14 (ENSPSMG00000001286)	LAMTOR4 (ENSPSMG00000001236)	MBLAC1 (ENSPSMG00000001197)	CNPY4 (ENSPSMG00000001191)	TAF6 (ENSPSMG00000001172)	AP4M1 (ENSPSMG00000001105)	MCM7 (ENSPSMG00000000935) ##22	COPS6 (ENSPSMG00000000865)	ZNF3 (ENSPSMG00000000842)	ZSCAN21 (ENSPSMG00000000825)	ZKSCAN1 (ENSPSMG00000000800)	ENSPSMG00000000759	ENSPSMG00000000753	GJC3 (ENSPSMG00000000746)	TRIM4 (ENSPSMG00000000738)
Coquerels sifaka	MODERN SPECIES	155	NYAP1 (ENSPCOG00000018803)	TSC22D4 (ENSPCOG00000025299)	SPACDR (ENSPCOG00000028301)	PPP1R35 (ENSPCOG00000012554)	MEPCE (ENSPCOG00000020884)	ENSPCOG00000016495	ENSPCOG00000023657	PVRIG (ENSPCOG00000028251)	STAG3 (ENSPCOG00000023625)	GPC2 (ENSPCOG00000027089)	GAL3ST4 (ENSPCOG00000009884)	TRAPPC14 (ENSPCOG00000015141)	LAMTOR4 (ENSPCOG00000025993)	TAF6 (ENSPCOG00000025985)	AP4M1 (ENSPCOG00000018341)	MCM7 (ENSPCOG00000014316) ##22	ENSPCOG00000026277	ZNF3 (ENSPCOG00000026524)	ZSCAN21 (ENSPCOG00000014680)	ZKSCAN1 (ENSPCOG00000003621)	ENSPCOG00000025347	AZGP1 (ENSPCOG00000028874)	TRIM4 (ENSPCOG00000003840)	OR2AE1 (ENSPCOG00000021928)	CYP3A5 (ENSPCOG00000018679)	CYP3A201 (ENSPCOG00000018451)	ENSPCOG00000023160	ENSPCOG00000002834	ZSCAN25 (ENSPCOG00000020153)	TMEM225B (ENSPCOG00000020944)	ZNF655 (ENSPCOG00000017676)
Mouse lemur	MODERN SPECIES	8	MEPCE (ENSMICG00000030166)	ZCWPW1 (ENSMICG00000003360)	ENSMICG00000034845	ENSMICG00000042823	ENSMICG00000028493	PVRIG (ENSMICG00000041865)	STAG3 (ENSMICG00000010896)	GPC2 (ENSMICG00000048056)	GAL3ST4 (ENSMICG00000027257)	LAMTOR4 (ENSMICG00000004008)	TRAPPC14 (ENSMICG00000004013)	MBLAC1 (ENSMICG00000026971)	CNPY4 (ENSMICG00000004002)	TAF6 (ENSMICG00000003995)	AP4M1 (ENSMICG00000003981)	MCM7 (ENSMICG00000003969) ##22	COPS6 (ENSMICG00000003965)	ZNF3 (ENSMICG00000003962)	ZSCAN21 (ENSMICG00000003959)	ZKSCAN1 (ENSMICG00000003957)	ENSMICG00000041812	AZGP1 (ENSMICG00000030520)	TRIM4 (ENSMICG00000005567)	ENSMICG00000006024	ENSMICG00000014650	ZSCAN25 (ENSMICG00000006018)	TMEM225B (ENSMICG00000029262)	ZNF655 (ENSMICG00000006010)	ZKSCAN5 (ENSMICG00000005991)	ZNF394 (ENSMICG00000005987)	ZNF789 (ENSMICG00000005979)
Bushbaby	MODERN SPECIES	257	PPP1R35 (ENSOGAG00000030437)	MEPCE (ENSOGAG00000034770)	ZCWPW1 (ENSOGAG00000011012)	ENSOGAG00000011009	ENSOGAG00000026054	PVRIG (ENSOGAG00000026172)	STAG3 (ENSOGAG00000016537)	GPC2 (ENSOGAG00000016535)	GAL3ST4 (ENSOGAG00000027768)	TRAPPC14 (ENSOGAG00000024357)	ENSOGAG00000028268	ENSOGAG00000028562	CNPY4 (ENSOGAG00000001216)	TAF6 (ENSOGAG00000006415)	AP4M1 (ENSOGAG00000006410)	MCM7 (ENSOGAG00000016842) ##22	COPS6 (ENSOGAG00000016843)	ZNF3 (ENSOGAG00000006409)	ZSCAN21 (ENSOGAG00000016311)	ZKSCAN1 (ENSOGAG00000016308)	ENSOGAG00000031686	ENSOGAG00000034559	GJC3 (ENSOGAG00000016305)	TRIM4 (ENSOGAG00000010646)	OR2AE1 (ENSOGAG00000034244)	CYP3A91 (ENSOGAG00000015249)	ENSOGAG00000032785	ENSOGAG00000004125	CYP3A169 (ENSOGAG00000004122)	CYP3A4 (ENSOGAG00000011021)	ZSCAN25 (ENSOGAG00000011024)
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299	ENSGT00940000162347
Tarsier	MODERN SPECIES	1581													CNPY4 (ENSTSYG00000036559)	TAF6 (ENSTSYG00000032760)	AP4M1 (ENSTSYG00000025500)	MCM7 (ENSTSYG00000001759) ##22	COPS6 (ENSTSYG00000035169)
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.a	ENSGT01100000263517.b.d.m.b.a.a.b	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.b	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000156593.wc.a
Hominidae	ANCESTRAL SPECIES	26	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.a	ENSGT01100000263517.b.d.m.b.a.a.b	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000156593.wc.a	ENSGT00940000162113
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00990000211684	ENSGT00390000017799.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.a	ENSGT01100000263517.b.d.m.b.a.a.b	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000156593.wc.a	ENSGT00940000162113
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00990000211684	ENSGT00390000017799.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.b	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000156593.wc.a	ENSGT00940000162113	ENSGT00510000055200
Pan	ANCESTRAL SPECIES	13	ENSGT00560000077278.a	ENSGT00940000163799.a.a	ENSGT00940000163799.b	ENSGT00390000017799.b	ENSGT00390000006208.a.b.b	ENSGT00390000017799.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a.b	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.a.a	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000156593.wc.a	ENSGT00940000162113	ENSGT00510000055200
Chimpanzee	MODERN SPECIES	20	ENSPTRG00000050294	ENSPTRG00000046172	PILRA (ENSPTRG00000019485)	ENSPTRG00000044581	PVRIG (ENSPTRG00000033873)	ENSPTRG00000019482	STAG3 (ENSPTRG00000019480)	GPC2 (ENSPTRG00000034371)	GAL3ST4 (ENSPTRG00000022945)	TRAPPC14 (ENSPTRG00000019477)	LAMTOR4 (ENSPTRG00000041498)	MBLAC1 (ENSPTRG00000033993)	CNPY4 (ENSPTRG00000019475)	TAF6 (ENSPTRG00000019474)	AP4M1 (ENSPTRG00000019473)	MCM7 (ENSPTRG00000019472) ##22	COPS6 (ENSPTRG00000019471)	ZNF3 (ENSPTRG00000019470)	ZSCAN21 (ENSPTRG00000019469)	ZKSCAN1 (ENSPTRG00000044142)	AZGP1 (ENSPTRG00000019465)	GJC3 (ENSPTRG00000019464)	TRIM4 (ENSPTRG00000047991)	OR2AE1 (ENSPTRG00000019462)	CYP3A43 (ENSPTRG00000048873)	CYP3A4 (ENSPTRG00000033773)	CYP3A7 (ENSPTRG00000019459)	CYP3A5 (ENSPTRG00000019458)	ENSPTRG00000047408	ZSCAN25 (ENSPTRG00000023744)	TMEM225B (ENSPTRG00000043828)
Bonobo	MODERN SPECIES	20	ZCWPW1 (ENSPPAG00000036953)	PILRA (ENSPPAG00000031626)	ENSPPAG00000029218	ENSPPAG00000043042	ENSPPAG00000041517	PVRIG (ENSPPAG00000038119)	STAG3 (ENSPPAG00000017377)	GPC2 (ENSPPAG00000004648)	GAL3ST4 (ENSPPAG00000038671)	TRAPPC14 (ENSPPAG00000042234)	ENSPPAG00000037869	MBLAC1 (ENSPPAG00000037678)	CNPY4 (ENSPPAG00000039438)	TAF6 (ENSPPAG00000036627)	AP4M1 (ENSPPAG00000043207)	MCM7 (ENSPPAG00000034581) ##22	COPS6 (ENSPPAG00000042580)	ZNF3 (ENSPPAG00000040095)	ZSCAN21 (ENSPPAG00000027118)	ZKSCAN1 (ENSPPAG00000037439)	AZGP1 (ENSPPAG00000036596)	GJC3 (ENSPPAG00000035445)	TRIM4 (ENSPPAG00000042347)	OR2AE1 (ENSPPAG00000016879)	CYP3A43 (ENSPPAG00000022863)	CYP3A4 (ENSPPAG00000038840)	CYP3A67 (ENSPPAG00000030737)	CYP3A5 (ENSPPAG00000038928)	ENSPPAG00000035255	ZSCAN25 (ENSPPAG00000043285)	TMEM225B (ENSPPAG00000040983)
Human	MODERN SPECIES	19	ZCWPW1 (ENSG00000078487)	ENSG00000289690	PILRA (ENSG00000085514)	PILRB (ENSG00000121716)	SPDYE3 (ENSG00000214300)	PVRIG (ENSG00000213413)	STAG3 (ENSG00000066923)	GPC2 (ENSG00000213420)	GAL3ST4 (ENSG00000197093)	TRAPPC14 (ENSG00000146826)	LAMTOR4 (ENSG00000188186)	MBLAC1 (ENSG00000214309)	CNPY4 (ENSG00000166997)	TAF6 (ENSG00000106290)	AP4M1 (ENSG00000221838)	MCM7 (ENSG00000166508) ##22	COPS6 (ENSG00000168090)	ZNF3 (ENSG00000166526)	ZSCAN21 (ENSG00000166529)	ZKSCAN1 (ENSG00000106261)	AZGP1 (ENSG00000160862)	GJC3 (ENSG00000176402)	TRIM4 (ENSG00000146833)	OR2AE1 (ENSG00000244623)	CYP3A43 (ENSG00000021461)	CYP3A4 (ENSG00000160868)	CYP3A7 (ENSG00000160870)	CYP3A7-CYP3A51P (ENSG00000282301)	CYP3A5 (ENSG00000106258)	ZSCAN25 (ENSG00000197037)	TMEM225B (ENSG00000244219)
Gorilla	MODERN SPECIES	20	TSC22D4 (ENSGGOG00000028315)	SPACDR (ENSGGOG00000000932)	PPP1R35 (ENSGGOG00000005377)	MEPCE (ENSGGOG00000005371)	ZCWPW1 (ENSGGOG00000005363)	PILRA (ENSGGOG00000005357)	ENSGGOG00000026523	STAG3 (ENSGGOG00000016923)	ENSGGOG00000006843	TRAPPC14 (ENSGGOG00000024935)	ENSGGOG00000027947	MBLAC1 (ENSGGOG00000011024)	CNPY4 (ENSGGOG00000002751)	TAF6 (ENSGGOG00000002747)	AP4M1 (ENSGGOG00000002739)	MCM7 (ENSGGOG00000002733) ##22	COPS6 (ENSGGOG00000002729)	ZNF3 (ENSGGOG00000040399)	ZSCAN21 (ENSGGOG00000011448)	ZKSCAN1 (ENSGGOG00000005107)	ENSGGOG00000001997	AZGP1 (ENSGGOG00000001993)	GJC3 (ENSGGOG00000011401)	TRIM4 (ENSGGOG00000044005)	OR2AE1 (ENSGGOG00000027735)	CYP3A43 (ENSGGOG00000002076)	CYP3A4 (ENSGGOG00000003894)	ENSGGOG00000043492	CYP3A5 (ENSGGOG00000003875)	ZSCAN25 (ENSGGOG00000016950)	TMEM225B (ENSGGOG00000040673)
Orangutan	MODERN SPECIES	20	PPP1R35 (ENSPPYG00000017412)	MEPCE (ENSPPYG00000017411)	ZCWPW1 (ENSPPYG00000017410)	PILRA (ENSPPYG00000017409)	PILRB (ENSPPYG00000017408)	ENSPPYG00000036436	STAG3 (ENSPPYG00000017407)	GPC2 (ENSPPYG00000017406)	GAL3ST4 (ENSPPYG00000017405)	TRAPPC14 (ENSPPYG00000017404)	LAMTOR4 (ENSPPYG00000017403)	MBLAC1 (ENSPPYG00000017402)	ENSPPYG00000017401	TAF6 (ENSPPYG00000017400)	AP4M1 (ENSPPYG00000017399)	MCM7 (ENSPPYG00000017398) ##22	COPS6 (ENSPPYG00000017397)	ZNF3 (ENSPPYG00000031522)	ZKSCAN1 (ENSPPYG00000017394)	ENSPPYG00000032584	AZGP1 (ENSPPYG00000017393)	GJC3 (ENSPPYG00000017392)	TRIM4 (ENSPPYG00000017391)	CYP3A43 (ENSPPYG00000036752)	CYP3A4 (ENSPPYG00000017390)	ENSPPYG00000031069	CYP3A7 (ENSPPYG00000032198)	CYP3A5 (ENSPPYG00000034419)	ZSCAN25 (ENSPPYG00000034484)	TMEM225B (ENSPPYG00000033654)	ZNF655 (ENSPPYG00000017384)
Gibbon	MODERN SPECIES	7	NYAP1 (ENSNLEG00000011748)	SPACDR (ENSNLEG00000011743)	PPP1R35 (ENSNLEG00000011736)	MEPCE (ENSNLEG00000011734)	ZCWPW1 (ENSNLEG00000011728)	PILRA (ENSNLEG00000011714)	ENSNLEG00000033660	ENSNLEG00000008690	STAG3 (ENSNLEG00000011569)	GAL3ST4 (ENSNLEG00000011567)	TRAPPC14 (ENSNLEG00000011564)	MBLAC1 (ENSNLEG00000011563)	CNPY4 (ENSNLEG00000011550)	TAF6 (ENSNLEG00000011535)	AP4M1 (ENSNLEG00000011496)	MCM7 (ENSNLEG00000011403) ##22	COPS6 (ENSNLEG00000011368)	ENSNLEG00000011361	ZSCAN21 (ENSNLEG00000029906)	ENSNLEG00000011350	ZKSCAN1 (ENSNLEG00000011334)	AZGP1 (ENSNLEG00000011330)	GJC3 (ENSNLEG00000011326)	TRIM4 (ENSNLEG00000011309)	ENSNLEG00000011307	CYP3A4 (ENSNLEG00000011206)	CYP3A7 (ENSNLEG00000026826)	CYP3A67 (ENSNLEG00000035532)	CYP3A5 (ENSNLEG00000035706)	ENSNLEG00000032867	ZSCAN25 (ENSNLEG00000029330)
Cercopithecidae	ANCESTRAL SPECIES	11	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.b.c.b.c	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200
Rhinopithecus	ANCESTRAL SPECIES	46	ENSGT00940000153993.A.c	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053.n	ENSGT00390000016053.m.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.y	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.c	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a	ENSGT00940000164024
Golden snub-nosed monkey	MODERN SPECIES	2033	PPP1R35 (ENSRROG00000029973)	MEPCE (ENSRROG00000031225)	ZCWPW1 (ENSRROG00000028354)	PILRA (ENSRROG00000045175)	PILRB (ENSRROG00000037504)	PVRIG (ENSRROG00000037613)	STAG3 (ENSRROG00000042631)	GPC2 (ENSRROG00000007415)	GAL3ST4 (ENSRROG00000040052)	TRAPPC14 (ENSRROG00000006488)	ENSRROG00000045507	MBLAC1 (ENSRROG00000022953)	CNPY4 (ENSRROG00000041618)	TAF6 (ENSRROG00000000310)	AP4M1 (ENSRROG00000045164)	MCM7 (ENSRROG00000037697) ##22	ENSRROG00000035880	ZNF3 (ENSRROG00000042728)	ZSCAN21 (ENSRROG00000036695)	ZKSCAN1 (ENSRROG00000041790)	AZGP1 (ENSRROG00000041493)	GJC3 (ENSRROG00000036316)	TRIM4 (ENSRROG00000044048)	CYP3A43 (ENSRROG00000040421)	CYP3A4 (ENSRROG00000030854)
Black snub-nosed monkey	MODERN SPECIES	814	PPP1R35 (ENSRBIG00000024622)	MEPCE (ENSRBIG00000027050)	ZCWPW1 (ENSRBIG00000034150)	PILRA (ENSRBIG00000012235)	PILRB (ENSRBIG00000034130)	PVRIG (ENSRBIG00000013796)	STAG3 (ENSRBIG00000044010)	GPC2 (ENSRBIG00000037034)	GAL3ST4 (ENSRBIG00000036109)	TRAPPC14 (ENSRBIG00000032984)	ENSRBIG00000037717	MBLAC1 (ENSRBIG00000024760)	CNPY4 (ENSRBIG00000035776)	TAF6 (ENSRBIG00000035172)	AP4M1 (ENSRBIG00000028098)	MCM7 (ENSRBIG00000032682) ##22	COPS6 (ENSRBIG00000013032)	ZNF3 (ENSRBIG00000032438)	ZSCAN21 (ENSRBIG00000029239)	ZKSCAN1 (ENSRBIG00000031764)	AZGP1 (ENSRBIG00000033971)	GJC3 (ENSRBIG00000038094)	TRIM4 (ENSRBIG00000044371)	CYP3A43 (ENSRBIG00000029718)	CYP3A5 (ENSRBIG00000037822)	CYP3A7 (ENSRBIG00000042537)	ZSCAN25 (ENSRBIG00000025241)	ENSRBIG00000040721	TMEM225B (ENSRBIG00000027495)	ZNF655 (ENSRBIG00000040289)	FAM200A (ENSRBIG00000027570)
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a
Cercopithecinae_b	ANCESTRAL SPECIES	36	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a
Olive baboon	MODERN SPECIES	14	PPP1R35 (ENSPANG00000021926)	MEPCE (ENSPANG00000022874)	ZCWPW1 (ENSPANG00000019546)	PILRA (ENSPANG00000025452)	PILRB (ENSPANG00000031519)	PVRIG (ENSPANG00000022229)	STAG3 (ENSPANG00000026305)	GPC2 (ENSPANG00000018038)	ENSPANG00000021649	TRAPPC14 (ENSPANG00000017637)	LAMTOR4 (ENSPANG00000022230)	MBLAC1 (ENSPANG00000003446)	CNPY4 (ENSPANG00000019549)	TAF6 (ENSPANG00000021832)	AP4M1 (ENSPANG00000017639)	MCM7 (ENSPANG00000000596) ##22	COPS6 (ENSPANG00000024389)	ZNF3 (ENSPANG00000011255)	ZSCAN21 (ENSPANG00000008154)	ZKSCAN1 (ENSPANG00000021727)	AZGP1 (ENSPANG00000015855)	GJC3 (ENSPANG00000026070)	TRIM4 (ENSPANG00000006101)	OR2AE1 (ENSPANG00000047108)	CYP3A43 (ENSPANG00000022197)	CYP3A4 (ENSPANG00000017641)	CYP3A7 (ENSPANG00000008155)	CYP3A5 (ENSPANG00000023122)	ZSCAN25 (ENSPANG00000023896)	TMEM225B (ENSPANG00000008632)	ENSPANG00000018842
Cercopithecinae_d	ANCESTRAL SPECIES	75	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.w	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441.a	ENSGT00940000164024
Drill	MODERN SPECIES	930	SPACDR (ENSMLEG00000039527)	MEPCE (ENSMLEG00000043318)	ZCWPW1 (ENSMLEG00000028696)	PILRA (ENSMLEG00000044058)	PILRB (ENSMLEG00000007163)	PVRIG (ENSMLEG00000025335)	STAG3 (ENSMLEG00000033224)	ENSMLEG00000035939	ENSMLEG00000030881	GAL3ST4 (ENSMLEG00000044284)	TRAPPC14 (ENSMLEG00000037149)	LAMTOR4 (ENSMLEG00000038423)	CNPY4 (ENSMLEG00000038537)	TAF6 (ENSMLEG00000000103)	AP4M1 (ENSMLEG00000009684)	MCM7 (ENSMLEG00000029634) ##22	ENSMLEG00000043589	ZNF3 (ENSMLEG00000037631)	ZSCAN21 (ENSMLEG00000033921)	ZKSCAN1 (ENSMLEG00000033821)	AZGP1 (ENSMLEG00000040376)	GJC3 (ENSMLEG00000037314)	TRIM4 (ENSMLEG00000043935)	CYP3A43 (ENSMLEG00000038120)	CYP3A4 (ENSMLEG00000032310)	ENSMLEG00000042657	CYP3A7 (ENSMLEG00000042648)	CYP3A67 (ENSMLEG00000035821)	CYP3A5 (ENSMLEG00000042908)	ZSCAN25 (ENSMLEG00000006141)	TMEM225B (ENSMLEG00000037236)
Sooty mangabey	MODERN SPECIES	630	SPACDR (ENSCATG00000045016)	PPP1R35 (ENSCATG00000043614)	MEPCE (ENSCATG00000027605)	ZCWPW1 (ENSCATG00000040902)	PILRB (ENSCATG00000044399)	PILRA (ENSCATG00000030910)	PVRIG (ENSCATG00000034669)	STAG3 (ENSCATG00000035847)	GPC2 (ENSCATG00000041763)	GAL3ST4 (ENSCATG00000033594)	TRAPPC14 (ENSCATG00000043347)	LAMTOR4 (ENSCATG00000029699)	CNPY4 (ENSCATG00000043539)	TAF6 (ENSCATG00000012749)	AP4M1 (ENSCATG00000036574)	MCM7 (ENSCATG00000038977) ##22	COPS6 (ENSCATG00000037996)	ZNF3 (ENSCATG00000038959)	ZSCAN21 (ENSCATG00000038725)	ZKSCAN1 (ENSCATG00000039552)	AZGP1 (ENSCATG00000041489)	GJC3 (ENSCATG00000039961)	TRIM4 (ENSCATG00000043750)	CYP3A43 (ENSCATG00000033186)	CYP3A7 (ENSCATG00000036704)	ZSCAN25 (ENSCATG00000010757)	TMEM225B (ENSCATG00000038153)	ZNF655 (ENSCATG00000041092)	FAM200A (ENSCATG00000007135)	ZKSCAN5 (ENSCATG00000043807)	ZNF394 (ENSCATG00000042636)
Macaca	ANCESTRAL SPECIES	3	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00940000163799.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.b.c.b.c.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200
Pig-tailed macaque	MODERN SPECIES	80	SPACDR (ENSMNEG00000027949)	PPP1R35 (ENSMNEG00000028097)	MEPCE (ENSMNEG00000038460)	ZCWPW1 (ENSMNEG00000040539)	PILRA (ENSMNEG00000033169)	PILRB (ENSMNEG00000041668)	PVRIG (ENSMNEG00000033100)	STAG3 (ENSMNEG00000042600)	GPC2 (ENSMNEG00000035744)	GAL3ST4 (ENSMNEG00000031551)	TRAPPC14 (ENSMNEG00000036155)	LAMTOR4 (ENSMNEG00000036975)	CNPY4 (ENSMNEG00000037538)	TAF6 (ENSMNEG00000041157)	AP4M1 (ENSMNEG00000044579)	MCM7 (ENSMNEG00000041954) ##22	COPS6 (ENSMNEG00000034971)	ZNF3 (ENSMNEG00000040839)	ZSCAN21 (ENSMNEG00000029830)	ZKSCAN1 (ENSMNEG00000017718)	AZGP1 (ENSMNEG00000040357)	GJC3 (ENSMNEG00000035274)	TRIM4 (ENSMNEG00000032676)	CYP3A43 (ENSMNEG00000025630)	CYP3A4 (ENSMNEG00000031776)	ENSMNEG00000019082	CYP3A5 (ENSMNEG00000029025)	ZSCAN25 (ENSMNEG00000026859)	TMEM225B (ENSMNEG00000039756)	ZNF655 (ENSMNEG00000032786)	FAM200A (ENSMNEG00000009524)
Macaca_a	ANCESTRAL SPECIES	7	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263539.b.a.a.a.a.a.a.a.b.b.b.a.b.a.a.b	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.i.a	ENSGT00950000182958.a.b.b.i.b.b.c.a	ENSGT00950000182958.a.b.b.i.b.b.c.b.d	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200
Crab-eating macaque	MODERN SPECIES	13	ENSMFAG00000041336	STAG3 (ENSMFAG00000036085)	GPC2 (ENSMFAG00000038373)	GAL3ST4 (ENSMFAG00000003150)	TRAPPC14 (ENSMFAG00000031413)	LAMTOR4 (ENSMFAG00000041345)	ENSMFAG00000060115	CNPY4 (ENSMFAG00000002468)	TAF6 (ENSMFAG00000004067)	AP4M1 (ENSMFAG00000040792)	COPS6 (ENSMFAG00000041812)	ZNF3 (ENSMFAG00000031300)	ZSCAN21 (ENSMFAG00000042653)	ZKSCAN1 (ENSMFAG00000030614)	ENSMFAG00000048208	MCM7 (ENSMFAG00000043988) ##22	AZGP1 (ENSMFAG00000001547)	GJC3 (ENSMFAG00000044817)	TRIM4 (ENSMFAG00000037036)	OR2AE1 (ENSMFAG00000036704)	CYP3A43 (ENSMFAG00000039406)	CYP3A4 (ENSMFAG00000047569)	CYP3A7 (ENSMFAG00000053006)	CYP3A5 (ENSMFAG00000062917)	ENSMFAG00000048200	ENSMFAG00000054128	ZSCAN25 (ENSMFAG00000046015)	TMEM225B (ENSMFAG00000045372)	ZNF655 (ENSMFAG00000037712)	FAM200A (ENSMFAG00000030317)	ZKSCAN5 (ENSMFAG00000037519)
Rhesus	MODERN SPECIES	13	ENSMMUG00000062357	PPP1R35 (ENSMMUG00000012728)	MEPCE (ENSMMUG00000012724)	ZCWPW1 (ENSMMUG00000012720)	PILRA (ENSMMUG00000043070)	PVRIG (ENSMMUG00000047872)	STAG3 (ENSMMUG00000018405)	GPC2 (ENSMMUG00000050732)	GAL3ST4 (ENSMMUG00000018404)	TRAPPC14 (ENSMMUG00000018402)	LAMTOR4 (ENSMMUG00000018401)	MBLAC1 (ENSMMUG00000013453)	CNPY4 (ENSMMUG00000013452)	TAF6 (ENSMMUG00000013450)	AP4M1 (ENSMMUG00000013447)	MCM7 (ENSMMUG00000013442) ##22	COPS6 (ENSMMUG00000013440)	ZNF3 (ENSMMUG00000004021)	ZSCAN21 (ENSMMUG00000014082)	ZKSCAN1 (ENSMMUG00000008601)	ENSMMUG00000059171	AZGP1 (ENSMMUG00000022504)	GJC3 (ENSMMUG00000022503)	TRIM4 (ENSMMUG00000022502)	OR2AE1 (ENSMMUG00000063929)	CYP3A43 (ENSMMUG00000022490)	ENSMMUG00000050824	ENSMMUG00000060678	CYP3A7 (ENSMMUG00000022730)	ZSCAN25 (ENSMMUG00000022728)	TMEM225B (ENSMMUG00000055483)
Vervet Monkey	MODERN SPECIES	20	SPACDR (ENSCSAG00000017898)	PPP1R35 (ENSCSAG00000017896)	MEPCE (ENSCSAG00000017894)	ZCWPW1 (ENSCSAG00000017892)	PILRA (ENSCSAG00000017890)	PVRIG (ENSCSAG00000017887)	STAG3 (ENSCSAG00000017886)	GPC2 (ENSCSAG00000017876)	GAL3ST4 (ENSCSAG00000017868)	TRAPPC14 (ENSCSAG00000017858)	LAMTOR4 (ENSCSAG00000017853)	MBLAC1 (ENSCSAG00000019488)	CNPY4 (ENSCSAG00000017852)	TAF6 (ENSCSAG00000017850)	AP4M1 (ENSCSAG00000017849)	MCM7 (ENSCSAG00000017846) ##22	COPS6 (ENSCSAG00000017840)	ZNF3 (ENSCSAG00000017832)	ZSCAN21 (ENSCSAG00000017830)	ZKSCAN1 (ENSCSAG00000017829)	AZGP1 (ENSCSAG00000017828)	GJC3 (ENSCSAG00000019489)	TRIM4 (ENSCSAG00000017827)	OR2AE1 (ENSCSAG00000019490)	CYP3A43 (ENSCSAG00000017826)	ENSCSAG00000017825	ENSCSAG00000017824	CYP3A7 (ENSCSAG00000017821)	CYP3A5 (ENSCSAG00000017809)	ZSCAN25 (ENSCSAG00000017807)	TMEM225B (ENSCSAG00000017806)
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.i.b.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495
Cebidae	ANCESTRAL SPECIES	24	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.i.b.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495
Marmoset	MODERN SPECIES	11	TSC22D4 (ENSCJAG00000015328)	PPP1R35 (ENSCJAG00000015345)	MEPCE (ENSCJAG00000015348)	ZCWPW1 (ENSCJAG00000015363)	ENSCJAG00000015373	PVRIG (ENSCJAG00000015383)	STAG3 (ENSCJAG00000015392)	GPC2 (ENSCJAG00000015439)	GAL3ST4 (ENSCJAG00000040305)	TRAPPC14 (ENSCJAG00000015483)	LAMTOR4 (ENSCJAG00000015475)	MBLAC1 (ENSCJAG00000015496)	CNPY4 (ENSCJAG00000015497)	TAF6 (ENSCJAG00000015522)	AP4M1 (ENSCJAG00000015542)	MCM7 (ENSCJAG00000015583) ##22	COPS6 (ENSCJAG00000015606)	ZNF3 (ENSCJAG00000015656)	ENSCJAG00000076538	ZKSCAN1 (ENSCJAG00000046899)	AZGP1 (ENSCJAG00000082690)	GJC3 (ENSCJAG00000015695)	TRIM4 (ENSCJAG00000015702)	CYP3A4 (ENSCJAG00000015744)	CYP3A5 (ENSCJAG00000064981)	CYP3A90 (ENSCJAG00000064350)	ZSCAN25 (ENSCJAG00000015783)	TMEM225B (ENSCJAG00000033315)	ZNF655 (ENSCJAG00000032195)	ZNF394 (ENSCJAG00000015808)	ZKSCAN5 (ENSCJAG00000015788)
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00460000041667	ENSGT00390000004198.c	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.i.b.b	ENSGT00950000182958.a.b.b.i.b.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495
Capuchin	MODERN SPECIES	82	C7orf61 (ENSCCAG00000033696)	ENSCCAG00000012964	MEPCE (ENSCCAG00000028766)	ZCWPW1 (ENSCCAG00000037503)	ENSCCAG00000021027	PVRIG (ENSCCAG00000026096)	STAG3 (ENSCCAG00000020431)	GPC2 (ENSCCAG00000003495)	GAL3ST4 (ENSCCAG00000024694)	TRAPPC14 (ENSCCAG00000030150)	LAMTOR4 (ENSCCAG00000027255)	MBLAC1 (ENSCCAG00000000643)	CNPY4 (ENSCCAG00000014461)	TAF6 (ENSCCAG00000022802)	AP4M1 (ENSCCAG00000026127)	MCM7 (ENSCCAG00000037289) ##22	COPS6 (ENSCCAG00000016311)	ZNF3 (ENSCCAG00000017227)	ZSCAN21 (ENSCCAG00000020654)	ZKSCAN1 (ENSCCAG00000024849)	AZGP1 (ENSCCAG00000033551)	GJC3 (ENSCCAG00000024102)	TRIM4 (ENSCCAG00000029392)	CYP3A4 (ENSCCAG00000017463)	CYP3A90 (ENSCCAG00000036748)	CYP3A5 (ENSCCAG00000034158)	ZSCAN25 (ENSCCAG00000037223)	ENSCCAG00000037804	TMEM225B (ENSCCAG00000018539)	ZNF655 (ENSCCAG00000022358)	ZKSCAN5 (ENSCCAG00000030902)
Bolivian squirrel monkey	MODERN SPECIES	104	TSC22D4 (ENSSBOG00000028981)	SPACDR (ENSSBOG00000030037)	PPP1R35 (ENSSBOG00000036036)	MEPCE (ENSSBOG00000011382)	ZCWPW1 (ENSSBOG00000030772)	ENSSBOG00000036253	PVRIG (ENSSBOG00000034075)	STAG3 (ENSSBOG00000027085)	GPC2 (ENSSBOG00000026615)	GAL3ST4 (ENSSBOG00000030770)	TRAPPC14 (ENSSBOG00000035173)	LAMTOR4 (ENSSBOG00000001304)	CNPY4 (ENSSBOG00000034113)	TAF6 (ENSSBOG00000020559)	AP4M1 (ENSSBOG00000012233)	MCM7 (ENSSBOG00000034481) ##22	COPS6 (ENSSBOG00000021270)	ZNF3 (ENSSBOG00000035115)	ZSCAN21 (ENSSBOG00000027308)	ZKSCAN1 (ENSSBOG00000022013)	AZGP1 (ENSSBOG00000026027)	GJC3 (ENSSBOG00000022987)	TRIM4 (ENSSBOG00000032029)	CYP3A4 (ENSSBOG00000035505)	CYP3A5 (ENSSBOG00000030571)	CYP3A90 (ENSSBOG00000022364)	ZSCAN25 (ENSSBOG00000032849)	TMEM225B (ENSSBOG00000035101)	ZNF655 (ENSSBOG00000023361)	ZKSCAN5 (ENSSBOG00000020293)	ZNF789 (ENSSBOG00000027974)
Mas night monkey	MODERN SPECIES	551	SPACDR (ENSANAG00000021058)	PPP1R35 (ENSANAG00000026372)	MEPCE (ENSANAG00000035127)	ZCWPW1 (ENSANAG00000030162)	ENSANAG00000029010	PVRIG (ENSANAG00000035281)	STAG3 (ENSANAG00000027937)	GPC2 (ENSANAG00000025222)	GAL3ST4 (ENSANAG00000020290)	TRAPPC14 (ENSANAG00000026152)	LAMTOR4 (ENSANAG00000029739)	MBLAC1 (ENSANAG00000017396)	CNPY4 (ENSANAG00000035499)	TAF6 (ENSANAG00000031303)	AP4M1 (ENSANAG00000032370)	MCM7 (ENSANAG00000028641) ##22	COPS6 (ENSANAG00000030358)	ZNF3 (ENSANAG00000033572)	ZSCAN21 (ENSANAG00000028776)	ZKSCAN1 (ENSANAG00000037717)
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495
Tree shrew	MODERN SPECIES	151													ENSTBEG00000015447	TAF6 (ENSTBEG00000014735)	AP4M1 (ENSTBEG00000014393)	MCM7 (ENSTBEG00000014138) ##22	COPS6 (ENSTBEG00000013945)	ZNF3 (ENSTBEG00000013905)	ZKSCAN1 (ENSTBEG00000013785)
Glires	ANCESTRAL SPECIES	11	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495
Rodentia	ANCESTRAL SPECIES	11	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495	ENSGT00940000154488.A.b.a.b
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00950000182958.a.b.b.j.a.a.a.b	ENSGT00940000162113	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347
Kangaroo rat	MODERN SPECIES	387							Stag3 (ENSDORG00000015349)	Gpc2 (ENSDORG00000015347)	Gal3st4 (ENSDORG00000029206)	Trappc14 (ENSDORG00000015345)	Lamtor4 (ENSDORG00000015343)	Mblac1 (ENSDORG00000026444)	Cnpy4 (ENSDORG00000000948)	Taf6 (ENSDORG00000000947)	Ap4m1 (ENSDORG00000019826)	ENSDORG00000000946 ##22	Cops6 (ENSDORG00000024208)	Zfp113 (ENSDORG00000000945)	Zscan21 (ENSDORG00000009833)	Zkscan1 (ENSDORG00000025152)	Gjc3 (ENSDORG00000004757)	ENSDORG00000027377	ENSDORG00000012448	ENSDORG00000030120	Zscan25 (ENSDORG00000024526)	ENSDORG00000029957	ENSDORG00000027431	Zkscan14 (ENSDORG00000006843)	Atp5j2 (ENSDORG00000000743)	Cpsf4 (ENSDORG00000000742)	Ptcd1 (ENSDORG00000000740)
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00940000162113	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00510000046986
Lesser Egyptian jerboa	MODERN SPECIES	130	Pop7 (ENSJJAG00000003989)	Gigyf1 (ENSJJAG00000002865)	Pcolce (ENSJJAG00000020878)	Fbxo24 (ENSJJAG00000023628)	ENSJJAG00000022701	Nyap1 (ENSJJAG00000019668)	Mepce (ENSJJAG00000010924)	Pvrig (ENSJJAG00000016575)	Stag3 (ENSJJAG00000020500)	Gpc2 (ENSJJAG00000000569)	ENSJJAG00000011919	Mblac1 (ENSJJAG00000015290)	Cnpy4 (ENSJJAG00000018233)	Taf6 (ENSJJAG00000001625)	Ap4m1 (ENSJJAG00000010248)	ENSJJAG00000016593 ##22	Zscan21 (ENSJJAG00000007135)	Cdk20 (ENSJJAG00000003338)	Azgp1 (ENSJJAG00000017331)	Gjc3 (ENSJJAG00000019066)	Cyp3a13 (ENSJJAG00000020062)	ENSJJAG00000013680	Zscan25 (ENSJJAG00000021006)	Zfp655 (ENSJJAG00000023740)	Fam20c (ENSJJAG00000023831)	Foxl3 (ENSJJAG00000004051)	Pdgfa (ENSJJAG00000016185)	Prkar1b (ENSJJAG00000020582)	Dnaaf5 (ENSJJAG00000010891)	Sun1 (ENSJJAG00000022626)	Get4 (ENSJJAG00000012689)
Muroidea	ANCESTRAL SPECIES	40	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b.a
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b.a
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT00950000182958.a.b.b.j.a.b.b
Northern American deer mouse	MODERN SPECIES	15	ENSPEMG00000026585	ENSPEMG00000029237	ENSPEMG00000025299	Pvrig (ENSPEMG00000016982)	Stag3 (ENSPEMG00000001610)	Gpc2 (ENSPEMG00000017907)	Gal3st4 (ENSPEMG00000017373)	Trappc14 (ENSPEMG00000016781)	Lamtor4 (ENSPEMG00000016501)	ENSPEMG00000026998	ENSPEMG00000025753	Mblac1 (ENSPEMG00000013519)	Cnpy4 (ENSPEMG00000013299)	Taf6 (ENSPEMG00000011578)	Ap4m1 (ENSPEMG00000008418)	Mcm7 (ENSPEMG00000004759) ##22	Cops6 (ENSPEMG00000000314)	Zfp113 (ENSPEMG00000018945)	Zscan21 (ENSPEMG00000018646)	Zkscan1 (ENSPEMG00000029949)	ENSPEMG00000026222	ENSPEMG00000030535	Azgp1 (ENSPEMG00000000368)	Gjc3 (ENSPEMG00000014103)	ENSPEMG00000027825	ENSPEMG00000027943	ENSPEMG00000025053	ENSPEMG00000014657	ENSPEMG00000024220	Or10ah1-ps1 (ENSPEMG00000004666)	Rnf216 (ENSPEMG00000024259)
Prairie vole	MODERN SPECIES	99	Pdgfa (ENSMOCG00000004445)	Foxl3 (ENSMOCG00000014468)	Fam20c (ENSMOCG00000013948)	Pvrig (ENSMOCG00000014941)	Stag3 (ENSMOCG00000019563)	Gpc2 (ENSMOCG00000022440)	Gal3st4 (ENSMOCG00000015923)	Trappc14 (ENSMOCG00000007584)	Lamtor4 (ENSMOCG00000009289)	ENSMOCG00000000195	ENSMOCG00000017777	Mblac1 (ENSMOCG00000003204)	Cnpy4 (ENSMOCG00000018726)	Taf6 (ENSMOCG00000007374)	Ap4m1 (ENSMOCG00000015753)	Mcm7 (ENSMOCG00000015282) ##22	ENSMOCG00000016508	Zfp113 (ENSMOCG00000015829)	Zscan21 (ENSMOCG00000020051)	Zkscan1 (ENSMOCG00000003312)	Azgp1 (ENSMOCG00000003953)	Gjc3 (ENSMOCG00000021394)	ENSMOCG00000003273	ENSMOCG00000020066	ENSMOCG00000012531	ENSMOCG00000017736	ENSMOCG00000020362
Cricetinae	ANCESTRAL SPECIES	27	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.w	ENSGT00390000008831.x	ENSGT00390000017799	ENSGT00950000182972.a.b.cb	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.b.a
Chinese hamster chok1gshd	MODERN SPECIES	202	Zcwpw1 (ENSCGRG00001015211)	ENSCGRG00001009717	ENSCGRG00001014484	ENSCGRG00001023975	Pvrig (ENSCGRG00001006424)	Stag3 (ENSCGRG00001013285)	Gpc2 (ENSCGRG00001009420)	Gal3st4 (ENSCGRG00001023710)	Trappc14 (ENSCGRG00001010144)	Lamtor4 (ENSCGRG00001015252)	Nxpe5 (ENSCGRG00001005222)	Mblac1 (ENSCGRG00001010304)	Cnpy4 (ENSCGRG00001004599)	Taf6 (ENSCGRG00001000372)	Ap4m1 (ENSCGRG00001019453)	Mcm7 (ENSCGRG00001019986) ##22	Cops6 (ENSCGRG00001023206)	Zfp113 (ENSCGRG00001022828)	Zscan21 (ENSCGRG00001012943)	Zkscan1 (ENSCGRG00001017820)	Azgp1 (ENSCGRG00001021087)	Gjc3 (ENSCGRG00001013502)	ENSCGRG00001000804	ENSCGRG00001002470	Cyp3a13 (ENSCGRG00001023453)	ENSCGRG00001014074	ENSCGRG00001022989	Col22a1 (ENSCGRG00001011324)	Fam135b (ENSCGRG00001009898)	Alkbh8 (ENSCGRG00001011248)	Cwf19l2 (ENSCGRG00001010585)
Golden Hamster	MODERN SPECIES	715	Ppp1r35 (ENSMAUG00000022180)	Mepce (ENSMAUG00000001456)	Zcwpw1 (ENSMAUG00000018839)	ENSMAUG00000018811	Pvrig (ENSMAUG00000020244)	ENSMAUG00000016137	Gpc2 (ENSMAUG00000020587)	Gal3st4 (ENSMAUG00000010113)	Trappc14 (ENSMAUG00000011092)	Lamtor4 (ENSMAUG00000021804)	Eif4e (ENSMAUG00000007913)	Mblac1 (ENSMAUG00000010074)	Cnpy4 (ENSMAUG00000007202)	Taf6 (ENSMAUG00000008743)	Ap4m1 (ENSMAUG00000010147)	Mcm7 (ENSMAUG00000013968) ##22	Cops6 (ENSMAUG00000015357)	ENSMAUG00000002298	Zkscan1 (ENSMAUG00000012943)	Azgp1 (ENSMAUG00000014261)	Gjc3 (ENSMAUG00000014388)	Cyp3a13 (ENSMAUG00000009938)
Murinae	ANCESTRAL SPECIES	20	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.z	ENSGT00390000008831.y	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.b.a
Mus	ANCESTRAL SPECIES	17	ENSGT00940000162800	ENSGT00950000182951.A.a.a	ENSGT00950000182890.D.c.b.a.b.b.b.d.d	ENSGT00940000153505.a.a.c.a.a.a.b.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.c	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT00390000008831.z	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000163992
Mus_A	ANCESTRAL SPECIES	6	ENSGT00950000182951.A.a.a	ENSGT00950000182890.D.c.b.a.b.b.b.d.d	ENSGT00940000153505.a.a.c.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.c	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260098.A.o	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT00390000008831.y	ENSGT00390000008831.z	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a
Ryukyu mouse	MODERN SPECIES	14	Fam20c (MGP_CAROLIEiJ_G0027921)	A430033K04Rik (MGP_CAROLIEiJ_G0027920)	Zfp68 (MGP_CAROLIEiJ_G0027919)	4933421I07Rik (MGP_CAROLIEiJ_G0027918)	Zfp157 (MGP_CAROLIEiJ_G0027916)	Stag3 (MGP_CAROLIEiJ_G0027914)	Gpc2 (MGP_CAROLIEiJ_G0027913)	MGP_CAROLIEiJ_G0027912	Gal3st4 (MGP_CAROLIEiJ_G0027911)	Trappc14 (MGP_CAROLIEiJ_G0027910)	Lamtor4 (MGP_CAROLIEiJ_G0027909)	Mblac1 (MGP_CAROLIEiJ_G0027908)	Cnpy4 (MGP_CAROLIEiJ_G0027907)	Taf6 (MGP_CAROLIEiJ_G0027906)	Ap4m1 (MGP_CAROLIEiJ_G0027905)	Mcm7 (MGP_CAROLIEiJ_G0027904) ##22	Cops6 (MGP_CAROLIEiJ_G0027903)	Zfp113 (MGP_CAROLIEiJ_G0027902)	Zscan21 (MGP_CAROLIEiJ_G0027901)	Zkscan1 (MGP_CAROLIEiJ_G0027900)	Azgp1 (MGP_CAROLIEiJ_G0027899)	MGP_CAROLIEiJ_G0027898	Cyp3a13 (MGP_CAROLIEiJ_G0027897)	MGP_CAROLIEiJ_G0027896	MGP_CAROLIEiJ_G0027895	Pilra (MGP_CAROLIEiJ_G0027894)	Zcwpw1 (MGP_CAROLIEiJ_G0027893)	Mepce (MGP_CAROLIEiJ_G0027892)	Ppp1r35 (MGP_CAROLIEiJ_G0027891)	Spacdr (MGP_CAROLIEiJ_G0027890)	Nyap1 (MGP_CAROLIEiJ_G0027889)
Mus_B	ANCESTRAL SPECIES	4	ENSGT00950000182951.A.a.a	ENSGT00950000182890.D.c.b.a.b.b.b.d.d	ENSGT00940000153505.a.a.c.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.c	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT00390000008831.y	ENSGT00390000008831.z	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071
Mus_C	ANCESTRAL SPECIES	4	ENSGT00950000182951.A.a.a	ENSGT00950000182890.D.c.b.a.b.b.b.d.d	ENSGT00940000153505.a.a.c.a.a.b	ENSGT00940000153505.a.a.c.a.a.a.b.b	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a.c	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00950000182890.D.c.a.b	ENSGT00940000161607.d	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.b.a	ENSGT00390000008831.z	ENSGT00560000077278.a	ENSGT00940000153993.A	ENSGT00390000004198	ENSGT00940000161400	ENSGT00890000139453.a	ENSGT00940000161071	ENSGT00940000163992
Steppe mouse	MODERN SPECIES	2331					Pvrig (ENSMSIG00000003326)	Stag3 (ENSMSIG00000003350)	Gpc2 (ENSMSIG00000003554)	Gal3st4 (ENSMSIG00000003625)	Trappc14 (ENSMSIG00000003686)	Lamtor4 (ENSMSIG00000003727)	Nxpe5 (ENSMSIG00000003756)	Mblac1 (ENSMSIG00000003956)	ENSMSIG00000003967	Taf6 (ENSMSIG00000003996)	Ap4m1 (ENSMSIG00000004074)	Mcm7 (ENSMSIG00000004173) ##22	Cops6 (ENSMSIG00000004354)	Zfp113 (ENSMSIG00000004379)	Zscan21 (ENSMSIG00000004434)	Zkscan1 (ENSMSIG00000004458)
spretus	MODERN SPECIES	14	Zfp68 (MGP_SPRETEiJ_G0028923)	MGP_SPRETEiJ_G0028922	Zfp157 (MGP_SPRETEiJ_G0028921)	MGP_SPRETEiJ_G0028920	MGP_SPRETEiJ_G0028919	Stag3 (MGP_SPRETEiJ_G0028918)	Gpc2 (MGP_SPRETEiJ_G0028917)	MGP_SPRETEiJ_G0028916	Gal3st4 (MGP_SPRETEiJ_G0028915)	Trappc14 (MGP_SPRETEiJ_G0028914)	Lamtor4 (MGP_SPRETEiJ_G0028913)	Mblac1 (MGP_SPRETEiJ_G0028912)	Cnpy4 (MGP_SPRETEiJ_G0028911)	Taf6 (MGP_SPRETEiJ_G0028910)	Ap4m1 (MGP_SPRETEiJ_G0028909)	Mcm7 (MGP_SPRETEiJ_G0028908) ##22	Cops6 (MGP_SPRETEiJ_G0028907)	Zfp113 (MGP_SPRETEiJ_G0028906)	Zscan21 (MGP_SPRETEiJ_G0028905)	Zkscan1 (MGP_SPRETEiJ_G0028904)	Azgp1 (MGP_SPRETEiJ_G0028903)	MGP_SPRETEiJ_G0028902	Cyp3a13 (MGP_SPRETEiJ_G0028901)	MGP_SPRETEiJ_G0028899	MGP_SPRETEiJ_G0028898	Mepce (MGP_SPRETEiJ_G0028897)	Ppp1r35 (MGP_SPRETEiJ_G0028896)	Spacdr (MGP_SPRETEiJ_G0028895)	Nyap1 (MGP_SPRETEiJ_G0028894)	Agfg2 (MGP_SPRETEiJ_G0028893)	Irs3 (MGP_SPRETEiJ_G0028892)
Mouse	MODERN SPECIES	14	A430033K04Rik (ENSMUSG00000056014)	Zfp68 (ENSMUSG00000058291)	1700123K08Rik (ENSMUSG00000029526)	Zfp157 (ENSMUSG00000036898)	Pvrig (ENSMUSG00000109713)	Stag3 (ENSMUSG00000036928)	Gpc2 (ENSMUSG00000029510)	Gal3st4 (ENSMUSG00000075593)	Trappc14 (ENSMUSG00000036948)	Lamtor4 (ENSMUSG00000050552)	Nxpe5 (ENSMUSG00000047592)	Mblac1 (ENSMUSG00000049285)	Cnpy4 (ENSMUSG00000036968)	Taf6 (ENSMUSG00000036980)	Ap4m1 (ENSMUSG00000019518)	Mcm7 (ENSMUSG00000029730) ##22	Cops6 (ENSMUSG00000019494)	Zfp113 (ENSMUSG00000037007)	Zscan21 (ENSMUSG00000037017)	Zkscan1 (ENSMUSG00000029729)	Smok3c (ENSMUSG00000075598)	Smok3b (ENSMUSG00000079156)	Smok3a (ENSMUSG00000075599)	Azgp1 (ENSMUSG00000037053)	Gjc3 (ENSMUSG00000056966)	Cyp3a13 (ENSMUSG00000029727)	Pilrb2 (ENSMUSG00000066682)	Pilrb1 (ENSMUSG00000066684)	Pilra (ENSMUSG00000046245)	Zcwpw1 (ENSMUSG00000037108)	Mepce (ENSMUSG00000029726)
Shrew mouse	MODERN SPECIES	15	Fam20c (MGP_PahariEiJ_G0024493)	A430033K04Rik (MGP_PahariEiJ_G0024492)	MGP_PahariEiJ_G0024491	Zfp157 (MGP_PahariEiJ_G0024490)	Stag3 (MGP_PahariEiJ_G0024489)	Gpc2 (MGP_PahariEiJ_G0024488)	MGP_PahariEiJ_G0024487	Gal3st4 (MGP_PahariEiJ_G0024486)	Trappc14 (MGP_PahariEiJ_G0024485)	Lamtor4 (MGP_PahariEiJ_G0024484)	Nxpe5 (MGP_PahariEiJ_G0024483)	Mblac1 (MGP_PahariEiJ_G0024482)	Cnpy4 (MGP_PahariEiJ_G0024481)	Taf6 (MGP_PahariEiJ_G0024480)	Ap4m1 (MGP_PahariEiJ_G0024479)	Mcm7 (MGP_PahariEiJ_G0024478) ##22	Cops6 (MGP_PahariEiJ_G0024477)	Zfp113 (MGP_PahariEiJ_G0024476)	Zscan21 (MGP_PahariEiJ_G0024475)	Zkscan1 (MGP_PahariEiJ_G0024474)	Azgp1 (MGP_PahariEiJ_G0024473)	MGP_PahariEiJ_G0024472	MGP_PahariEiJ_G0024471	MGP_PahariEiJ_G0024470	Nyap1 (MGP_PahariEiJ_G0024469)	MGP_PahariEiJ_G0024468	MGP_PahariEiJ_G0024467	MGP_PahariEiJ_G0024465	Gnb2 (MGP_PahariEiJ_G0024464)	MGP_PahariEiJ_G0024463	Pop7 (MGP_PahariEiJ_G0024462)
Rat	MODERN SPECIES	3	Vom2r61 (ENSRNOG00000063614)	LOC102546903 (ENSRNOG00000049331)	Pvrig (ENSRNOG00000051906)	Stag3 (ENSRNOG00000001360)	Gpc2 (ENSRNOG00000001367)	Gal3st4 (ENSRNOG00000001375)	Trappc14 (ENSRNOG00000039214)	Lamtor4 (ENSRNOG00000027028)	RGD1562319 (ENSRNOG00000063766)	LOC120095896 (ENSRNOG00000066802)	Nxpe5l1 (ENSRNOG00000069743)	LOC680825 (ENSRNOG00000069278)	Nxpe5 (ENSRNOG00000068266)	Taf6 (ENSRNOG00000001355)	Ap4m1 (ENSRNOG00000001353)	Mcm7 (ENSRNOG00000001349) ##22	Cops6 (ENSRNOG00000001346)	Zfp113 (ENSRNOG00000063927)	Zscan21 (ENSRNOG00000039234)	LOC103691088 (ENSRNOG00000061371)	Zkscan1 (ENSRNOG00000001335)	Azgp1 (ENSRNOG00000001333)	Gjc3 (ENSRNOG00000001329)	Rpl31l4 (ENSRNOG00000039249)	Cyp3a9 (ENSRNOG00000046643)	Vamp7 (ENSRNOG00000008372)	Spry3 (ENSRNOG00000060153)	ENSRNOG00000070660	ENSRNOG00000063039	Cyp3a62 (ENSRNOG00000001379)	Il3ra (ENSRNOG00000001325)
Upper Galilee mountains blind mole rat	MODERN SPECIES	779	Ppp1r35 (ENSNGAG00000021631)	Mepce (ENSNGAG00000007098)	Zcwpw1 (ENSNGAG00000023314)	ENSNGAG00000024168	Pvrig (ENSNGAG00000021882)	Stag3 (ENSNGAG00000022380)	Gpc2 (ENSNGAG00000021576)	ENSNGAG00000023615	Trappc14 (ENSNGAG00000018213)	Lamtor4 (ENSNGAG00000022061)	Nxpe5 (ENSNGAG00000010980)	Mblac1 (ENSNGAG00000019862)	Cnpy4 (ENSNGAG00000012631)	ENSNGAG00000021037	Ap4m1 (ENSNGAG00000012964)	ENSNGAG00000018438 ##22	Cops6 (ENSNGAG00000020494)	ENSNGAG00000017557
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495	ENSGT00940000154488.A.b.a.b
Sciuridae	ANCESTRAL SPECIES	9	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b.m	ENSGT00950000182866.D.d.b.n	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00940000163495	ENSGT00940000154488.A.b.a.b
Marmotini	ANCESTRAL SPECIES	3	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00940000156204.k.a	ENSGT00950000182866.D.d.b.m	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b.g.a	ENSGT00950000182958.a.b.b.j.a.a.b.a
Marmotini_b	ANCESTRAL SPECIES	1	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00940000156204.k.a	ENSGT00950000182866.D.d.b.m	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a
Arctic ground squirrel	MODERN SPECIES	574	ZCWPW1 (ENSUPAG00010017970)	ENSUPAG00010018022	PVRIG (ENSUPAG00010018032)	STAG3 (ENSUPAG00010018041)	GPC2 (ENSUPAG00010018098)	GAL3ST4 (ENSUPAG00010018110)	TRAPPC14 (ENSUPAG00010018118)	LAMTOR4 (ENSUPAG00010018134)	ENSUPAG00010018141	ENSUPAG00010018147	ENSUPAG00010018161	MBLAC1 (ENSUPAG00010018166)	CNPY4 (ENSUPAG00010018168)	TAF6 (ENSUPAG00010018176)	AP4M1 (ENSUPAG00010018188)	MCM7 (ENSUPAG00010018201) ##22	COPS6 (ENSUPAG00010018239)	ENSUPAG00010018249	ZSCAN21 (ENSUPAG00010018261)	ZKSCAN1 (ENSUPAG00010000068)	AZGP1 (ENSUPAG00010000127)	GJC3 (ENSUPAG00010000186)	ENSUPAG00010000200
Squirrel	MODERN SPECIES	143	MEPCE (ENSSTOG00000007568)	ZCWPW1 (ENSSTOG00000007532)	ENSSTOG00000028480	STAG3 (ENSSTOG00000011571)	GPC2 (ENSSTOG00000011563)	GAL3ST4 (ENSSTOG00000028837)	TRAPPC14 (ENSSTOG00000011551)	LAMTOR4 (ENSSTOG00000023090)	ENSSTOG00000003856	ENSSTOG00000022093	MBLAC1 (ENSSTOG00000027830)	CNPY4 (ENSSTOG00000009083)	TAF6 (ENSSTOG00000009063)	AP4M1 (ENSSTOG00000009043)	COPS6 (ENSSTOG00000009004)	MCM7 (ENSSTOG00000009021) ##22	ZNF3 (ENSSTOG00000028734)	ZSCAN21 (ENSSTOG00000021741)	ZKSCAN1 (ENSSTOG00000010173)	AZGP1 (ENSSTOG00000028979)	GJC3 (ENSSTOG00000003928)	ENSSTOG00000024772
Alpin marmot	MODERN SPECIES	28	MEPCE (ENSMMMG00000012390)	ZCWPW1 (ENSMMMG00000012393)	ENSMMMG00000012423	PVRIG (ENSMMMG00000012426)	STAG3 (ENSMMMG00000012432)	GPC2 (ENSMMMG00000012481)	GAL3ST4 (ENSMMMG00000012491)	TRAPPC14 (ENSMMMG00000012510)	LAMTOR4 (ENSMMMG00000012523)	ENSMMMG00000012527	ENSMMMG00000012533	MBLAC1 (ENSMMMG00000012546)	CNPY4 (ENSMMMG00000012551)	TAF6 (ENSMMMG00000012576)	AP4M1 (ENSMMMG00000012605)	MCM7 (ENSMMMG00000012620) ##22	COPS6 (ENSMMMG00000012677)	ENSMMMG00000012691	ZSCAN21 (ENSMMMG00000012715)	ZKSCAN1 (ENSMMMG00000012720)	AZGP1 (ENSMMMG00000012750)	ENSMMMG00000012753	GJC3 (ENSMMMG00000012758)	ENSMMMG00000012765
Eurasian red squirrel	MODERN SPECIES	9	MEPCE (ENSSVLG00005024712)	ZCWPW1 (ENSSVLG00005024608)	ENSSVLG00005024546	PVRIG (ENSSVLG00005024504)	STAG3 (ENSSVLG00005024134)	GPC2 (ENSSVLG00005024038)	GAL3ST4 (ENSSVLG00005024016)	TRAPPC14 (ENSSVLG00005023989)	LAMTOR4 (ENSSVLG00005023948)	ENSSVLG00005023894	ENSSVLG00005023834	MBLAC1 (ENSSVLG00005023812)	CNPY4 (ENSSVLG00005023789)	TAF6 (ENSSVLG00005023767)	AP4M1 (ENSSVLG00005023706)	MCM7 (ENSSVLG00005023639) ##22	COPS6 (ENSSVLG00005023549)	ZNF3 (ENSSVLG00005023493)	ZSCAN21 (ENSSVLG00005023456)	ZKSCAN1 (ENSSVLG00005023421)	AZGP1 (ENSSVLG00005023385)	GJC3 (ENSSVLG00005023365)	OR2AE1 (ENSSVLG00005023354)	ENSSVLG00005023015	ENSSVLG00005022805	ZSCAN25 (ENSSVLG00005022756)	TMEM225B (ENSSVLG00005022717)	ZNF655 (ENSSVLG00005022626)	ZKSCAN5 (ENSSVLG00005022583)	ZNF394 (ENSSVLG00005022501)	ZNF789 (ENSSVLG00005022423)
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b.p	ENSGT00950000182866.D.d.b.o.a	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00510000046986	ENSGT00940000155520
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b.o.b	ENSGT00950000182866.D.d.b.o.a	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.b	ENSGT00950000182958.a.b.b.j.a.a.a.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347	ENSGT00510000046986	ENSGT00940000155520
Guinea pig	MODERN SPECIES	30	MEPCE (ENSCPOG00000015225)	PPP1R35 (ENSCPOG00000032452)	ENSCPOG00000015149	PVRIG (ENSCPOG00000023204)	STAG3 (ENSCPOG00000013372)	GPC2 (ENSCPOG00000025274)	ENSCPOG00000025128	TRAPPC14 (ENSCPOG00000023747)	ENSCPOG00000013370	ENSCPOG00000024907	ENSCPOG00000022298	MBLAC1 (ENSCPOG00000022377)	CNPY4 (ENSCPOG00000005128)	TAF6 (ENSCPOG00000005116)	AP4M1 (ENSCPOG00000005111)	MCM7 (ENSCPOG00000005107) ##22	COPS6 (ENSCPOG00000022041)	ZNF3 (ENSCPOG00000010860)	ZSCAN21 (ENSCPOG00000015351)	ZKSCAN1 (ENSCPOG00000005770)	AZGP1 (ENSCPOG00000030246)	GJC3 (ENSCPOG00000012551)	ENSCPOG00000022315	ENSCPOG00000020375	ENSCPOG00000012976	ENSCPOG00000024937	Cyp3a14 (ENSCPOG00000001589)	ZSCAN25 (ENSCPOG00000031211)	ZNF655 (ENSCPOG00000032275)	ZKSCAN5 (ENSCPOG00000032578)	ZNF394 (ENSCPOG00000013321)
Hystricomorpha_b	ANCESTRAL SPECIES	38	ENSGT00940000161400	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b.o.b	ENSGT00950000182866.D.d.b.o.a	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00950000182958.a.b.b.j.a.a.b
Long-tailed chinchilla	MODERN SPECIES	280	ENSCLAG00000003036	ENSCLAG00000003445	MEPCE (ENSCLAG00000003470)	ZCWPW1 (ENSCLAG00000003676)	STAG3 (ENSCLAG00000004018)	GPC2 (ENSCLAG00000001241)	GAL3ST4 (ENSCLAG00000001387)	TRAPPC14 (ENSCLAG00000002207)	LAMTOR4 (ENSCLAG00000002133)	ENSCLAG00000002337	ENSCLAG00000001293	MBLAC1 (ENSCLAG00000001302)	CNPY4 (ENSCLAG00000001339)	TAF6 (ENSCLAG00000001411)	AP4M1 (ENSCLAG00000001567)	MCM7 (ENSCLAG00000002356) ##22	COPS6 (ENSCLAG00000002592)	ZNF3 (ENSCLAG00000003317)	ZSCAN21 (ENSCLAG00000001105)	ZKSCAN1 (ENSCLAG00000001162)	AZGP1 (ENSCLAG00000001347)	GJC3 (ENSCLAG00000001422)	ENSCLAG00000001479	ENSCLAG00000001437
Degu	MODERN SPECIES	76	PPP1R35 (ENSODEG00000017251)	MEPCE (ENSODEG00000016662)	ENSODEG00000016818	STAG3 (ENSODEG00000017407)	GPC2 (ENSODEG00000016920)	GAL3ST4 (ENSODEG00000017731)	TRAPPC14 (ENSODEG00000016953)	ENSODEG00000016725	ENSODEG00000016889	ENSODEG00000016612	MBLAC1 (ENSODEG00000020533)	CNPY4 (ENSODEG00000016875)	TAF6 (ENSODEG00000016755)	AP4M1 (ENSODEG00000016717)	ENSODEG00000016551	ENSODEG00000017079 ##22	COPS6 (ENSODEG00000016873)	ZNF3 (ENSODEG00000016822)	ENSODEG00000020419	ZSCAN21 (ENSODEG00000017115)	ZKSCAN1 (ENSODEG00000016790)	AZGP1 (ENSODEG00000016741)	GJC3 (ENSODEG00000016841)	ENSODEG00000016804
Lagomorpha	ANCESTRAL SPECIES	54	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.r	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a.c	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a.d	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000183069.a.a	ENSGT00950000182958.a.b.b.j.a.b	ENSGT00940000162113	ENSGT00760000119441	ENSGT00940000162299	ENSGT00940000162347
Rabbit	MODERN SPECIES	493											ENSOCUG00000033220	CNPY4 (ENSOCUG00000000306)	ENSOCUG00000023746	TAF6 (ENSOCUG00000023479)	AP4M1 (ENSOCUG00000000304)	MCM7 (ENSOCUG00000000300) ##22	COPS6 (ENSOCUG00000000298)	ZNF3 (ENSOCUG00000005390)	ZSCAN21 (ENSOCUG00000015340)	ZKSCAN1 (ENSOCUG00000015333)	ENSOCUG00000025816	AZGP1 (ENSOCUG00000027203)	GJC3 (ENSOCUG00000012436)	TRIM4 (ENSOCUG00000039179)	ENSOCUG00000034133	ENSOCUG00000038804	ENSOCUG00000026110	ENSOCUG00000035935	ENSOCUG00000027046	CYP3A6 (ENSOCUG00000023380)	ENSOCUG00000024710
Pika	MODERN SPECIES	2002							ENSOPRG00000003620	STAG3 (ENSOPRG00000003560)	GPC2 (ENSOPRG00000003529)	GAL3ST4 (ENSOPRG00000018797)	TRAPPC14 (ENSOPRG00000003494)	LAMTOR4 (ENSOPRG00000003476)	CNPY4 (ENSOPRG00000003452)	TAF6 (ENSOPRG00000003418)	AP4M1 (ENSOPRG00000003392)	MCM7 (ENSOPRG00000003362) ##22	COPS6 (ENSOPRG00000003324)	ZNF3 (ENSOPRG00000003308)	ENSOPRG00000018462	GJC3 (ENSOPRG00000003301)	TRIM4 (ENSOPRG00000003282)	ENSOPRG00000003252
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299	ENSGT00940000154740.a.a.c.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Hedgehog	MODERN SPECIES	6115																MCM7 (ENSEEUG00000007652) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024
Cetacea	ANCESTRAL SPECIES	3	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.k.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000163495
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.k.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000163495
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.k.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000163495
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.k.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000163495
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.k.b	ENSGT00950000182958.a.b.b.j.k.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000163495
Beluga whale	MODERN SPECIES	48	PPP1R35 (ENSDLEG00000010173)	MEPCE (ENSDLEG00000010194)	ZCWPW1 (ENSDLEG00000010214)	ENSDLEG00000010231	PVRIG (ENSDLEG00000010248)	STAG3 (ENSDLEG00000013933)	ENSDLEG00000015383	ENSDLEG00000015391	GAL3ST4 (ENSDLEG00000015402)	CUNH7orf43 (ENSDLEG00000015414)	LAMTOR4 (ENSDLEG00000015434)	MBLAC1 (ENSDLEG00000015444)	CNPY4 (ENSDLEG00000015450)	TAF6 (ENSDLEG00000015468)	AP4M1 (ENSDLEG00000015497)	MCM7 (ENSDLEG00000015518) ##22	COPS6 (ENSDLEG00000015546)	ENSDLEG00000015560	ZKSCAN1 (ENSDLEG00000015567)	ZKSCAN1 (ENSDLEG00000015572)	GJC3 (ENSDLEG00000015584)	TRIM4 (ENSDLEG00000015596)	ENSDLEG00000015622	ENSDLEG00000015652	ENSDLEG00000015665	ZSCAN25 (ENSDLEG00000015677)	TMEM225B (ENSDLEG00000015693)	ZNF655 (ENSDLEG00000015709)	ZNF789 (ENSDLEG00000015734)	ZKSCAN5 (ENSDLEG00000015741)	ZNF394 (ENSDLEG00000015750)
Narwhal	MODERN SPECIES	299	SPACDR (ENSMMNG00015001010)	PPP1R35 (ENSMMNG00015001026)	MEPCE (ENSMMNG00015001046)	ZCWPW1 (ENSMMNG00015001073)	ENSMMNG00015001137	PVRIG (ENSMMNG00015001158)	STAG3 (ENSMMNG00015001211)	GPC2 (ENSMMNG00015001355)	GAL3ST4 (ENSMMNG00015001387)	TRAPPC14 (ENSMMNG00015001408)	LAMTOR4 (ENSMMNG00015001442)	MBLAC1 (ENSMMNG00015001481)	CNPY4 (ENSMMNG00015001500)	TAF6 (ENSMMNG00015001529)	AP4M1 (ENSMMNG00015001591)	MCM7 (ENSMMNG00015001626) ##22	COPS6 (ENSMMNG00015001675)	ZNF3 (ENSMMNG00015001689)	ZSCAN21 (ENSMMNG00015001707)	ZKSCAN1 (ENSMMNG00015001718)	GJC3 (ENSMMNG00015001742)	TRIM4 (ENSMMNG00015001764)	ENSMMNG00015001865	ENSMMNG00015002083	ENSMMNG00015002160	ZSCAN25 (ENSMMNG00015002179)	TMEM225B (ENSMMNG00015002205)	ENSMMNG00015002225	ZNF655 (ENSMMNG00015002264)	FAM200A (ENSMMNG00015002312)	ZNF789 (ENSMMNG00015002337)
Vaquita	MODERN SPECIES	6	SPACDR (ENSPSNG00000010350)	PPP1R35 (ENSPSNG00000010396)	MEPCE (ENSPSNG00000010451)	ZCWPW1 (ENSPSNG00000010527)	ENSPSNG00000010610	PVRIG (ENSPSNG00000010724)	STAG3 (ENSPSNG00000010808)	GPC2 (ENSPSNG00000010848)	GAL3ST4 (ENSPSNG00000010978)	TRAPPC14 (ENSPSNG00000011025)	LAMTOR4 (ENSPSNG00000011061)	MBLAC1 (ENSPSNG00000011183)	CNPY4 (ENSPSNG00000011270)	TAF6 (ENSPSNG00000011326)	AP4M1 (ENSPSNG00000011576)	MCM7 (ENSPSNG00000011668) ##22	COPS6 (ENSPSNG00000011867)	ZNF3 (ENSPSNG00000011910)	ZSCAN21 (ENSPSNG00000011983)	ZKSCAN1 (ENSPSNG00000012027)	GJC3 (ENSPSNG00000012122)	TRIM4 (ENSPSNG00000012189)	ENSPSNG00000012402	ENSPSNG00000013187	ZSCAN25 (ENSPSNG00000013706)	TMEM225B (ENSPSNG00000013751)	ZNF655 (ENSPSNG00000009816)	FAM200A (ENSPSNG00000010058)	ZNF789 (ENSPSNG00000010094)	ZKSCAN5 (ENSPSNG00000010150)	ZNF394 (ENSPSNG00000010193)
Dolphin	MODERN SPECIES	3297														TAF6 (ENSTTRG00000012315)	AP4M1 (ENSTTRG00000021386)	MCM7 (ENSTTRG00000012313) ##22	COPS6 (ENSTTRG00000012312)	ZNF3 (ENSTTRG00000012311)	ZSCAN21 (ENSTTRG00000012309)	ZKSCAN1 (ENSTTRG00000012308)
Sperm whale	MODERN SPECIES	5	ENSPCTG00005011298	ENSPCTG00005011371	ENSPCTG00005011409	ENSPCTG00005008812	GAL3ST4 (ENSPCTG00005008857)	MAP11 (ENSPCTG00005008893)	LAMTOR4 (ENSPCTG00005008950)	ENSPCTG00005009059	ENSPCTG00005009092	ENSPCTG00005009109	ENSPCTG00005009181	MBLAC1 (ENSPCTG00005009368)	CNPY4 (ENSPCTG00005009386)	TAF6 (ENSPCTG00005009468)	AP4M1 (ENSPCTG00005009531)	MCM7 (ENSPCTG00005009620) ##22	COPS6 (ENSPCTG00005009754)	ZNF3 (ENSPCTG00005009825)	ZSCAN21 (ENSPCTG00005009873)	GJC3 (ENSPCTG00005009920)	TRIM4 (ENSPCTG00005009981)	ENSPCTG00005010186	ENSPCTG00005011057	TMEM225B (ENSPCTG00005011436)	FAM200A (ENSPCTG00005011475)	ZNF789 (ENSPCTG00005011499)	ZKSCAN5 (ENSPCTG00005011547)	ZNF394 (ENSPCTG00005011596)	TMEM130 (ENSPCTG00005011667)	TRRAP (ENSPCTG00005012036)	SMURF1 (ENSPCTG00005012298)
Blue whale	MODERN SPECIES	6	MEPCE (ENSBMSG00010011604)	ZCWPW1 (ENSBMSG00010011623)	ENSBMSG00010011668	PVRIG (ENSBMSG00010011681)	STAG3 (ENSBMSG00010011703)	GPC2 (ENSBMSG00010011721)	GAL3ST4 (ENSBMSG00010011730)	TRAPPC14 (ENSBMSG00010011746)	LAMTOR4 (ENSBMSG00010011775)	ENSBMSG00010011785	ENSBMSG00010011790	MBLAC1 (ENSBMSG00010011800)	CNPY4 (ENSBMSG00010011807)	TAF6 (ENSBMSG00010011838)	AP4M1 (ENSBMSG00010011922)	MCM7 (ENSBMSG00010011970) ##22	COPS6 (ENSBMSG00010012044)	ZNF3 (ENSBMSG00010012053)	ZSCAN21 (ENSBMSG00010012067)	ZKSCAN1 (ENSBMSG00010012082)	GJC3 (ENSBMSG00010012099)	TRIM4 (ENSBMSG00010012118)	ENSBMSG00010012139	ENSBMSG00010012179	ENSBMSG00010012262	ENSBMSG00010012280	ENSBMSG00010012316	ZSCAN25 (ENSBMSG00010012378)	TMEM225B (ENSBMSG00010012383)	ZNF655 (ENSBMSG00010012412)	FAM200A (ENSBMSG00010012436)
Pecora	ANCESTRAL SPECIES	10	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024
Yarkand deer	MODERN SPECIES	1	PPP1R35 (ENSCHYG00000020515)	MEPCE (ENSCHYG00000020573)	ZCWPW1 (ENSCHYG00000020740)	ENSCHYG00000020986	PVRIG (ENSCHYG00000021048)	STAG3 (ENSCHYG00000021135)	GPC2 (ENSCHYG00000021470)	TRAPPC14 (ENSCHYG00000021631)	LAMTOR4 (ENSCHYG00000021789)	ENSCHYG00000021961	ENSCHYG00000022060	MBLAC1 (ENSCHYG00000009155)	CNPY4 (ENSCHYG00000009178)	TAF6 (ENSCHYG00000009249)	AP4M1 (ENSCHYG00000009537)	MCM7 (ENSCHYG00000010103) ##22	COPS6 (ENSCHYG00000010409)	ZNF3 (ENSCHYG00000010562)	ZSCAN21 (ENSCHYG00000010631)	ZKSCAN1 (ENSCHYG00000010679)	ENSCHYG00000010776	AZGP1 (ENSCHYG00000010798)	GJC3 (ENSCHYG00000010841)	TRIM4 (ENSCHYG00000010879)	OR2AE1 (ENSCHYG00000010965)	ENSCHYG00000011123	ZSCAN25 (ENSCHYG00000011869)	TMEM225B (ENSCHYG00000011916)	ENSCHYG00000012030	ZNF655 (ENSCHYG00000012070)	ZNF789 (ENSCHYG00000012222)
Percora_a	ANCESTRAL SPECIES	9	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00940000153104.f
Siberian musk deer	MODERN SPECIES	1230	MEPCE (ENSMMSG00000012759)	ZCWPW1 (ENSMMSG00000012792)	ENSMMSG00000012861	PVRIG (ENSMMSG00000012871)	STAG3 (ENSMMSG00000012895)	GPC2 (ENSMMSG00000013072)	GAL3ST4 (ENSMMSG00000013107)	TRAPPC14 (ENSMMSG00000013123)	LAMTOR4 (ENSMMSG00000013158)	ENSMMSG00000013202	ENSMMSG00000013246	MBLAC1 (ENSMMSG00000013256)	CNPY4 (ENSMMSG00000013262)	TAF6 (ENSMMSG00000013278)	AP4M1 (ENSMMSG00000013345)	MCM7 (ENSMMSG00000013385) ##22	COPS6 (ENSMMSG00000013456)	ZNF3 (ENSMMSG00000013496)	ZSCAN21 (ENSMMSG00000013516)	ZKSCAN1 (ENSMMSG00000013532)	AZGP1 (ENSMMSG00000013554)	GJC3 (ENSMMSG00000013564)	TRIM4 (ENSMMSG00000013574)	OR2AE1 (ENSMMSG00000013591)	ENSMMSG00000013676	ENSMMSG00000014257	ENSMMSG00000014350	ENSMMSG00000014367	ZSCAN25 (ENSMMSG00000014381)	TMEM225B (ENSMMSG00000014403)	ZNF655 (ENSMMSG00000014427)
Bovidae	ANCESTRAL SPECIES	11	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.a	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00940000153104.f
Caprinae	ANCESTRAL SPECIES	7	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b.a	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00940000153104.f
Goat	MODERN SPECIES	17	PPP1R35 (ENSCHIG00000017928)	MEPCE (ENSCHIG00000008713)	ZCWPW1 (ENSCHIG00000024057)	ENSCHIG00000014207	PVRIG (ENSCHIG00000026650)	STAG3 (ENSCHIG00000022562)	GPC2 (ENSCHIG00000018250)	GAL3ST4 (ENSCHIG00000026123)	TRAPPC14 (ENSCHIG00000021034)	LAMTOR4 (ENSCHIG00000010923)	ENSCHIG00000025990	MBLAC1 (ENSCHIG00000018917)	CNPY4 (ENSCHIG00000025889)	TAF6 (ENSCHIG00000027219)	AP4M1 (ENSCHIG00000017578)	MCM7 (ENSCHIG00000027136) ##22	COPS6 (ENSCHIG00000013561)	ZNF3 (ENSCHIG00000018249)	ZSCAN21 (ENSCHIG00000018092)	ZKSCAN1 (ENSCHIG00000019498)	AZGP1 (ENSCHIG00000009096)	GJC3 (ENSCHIG00000005791)	TRIM4 (ENSCHIG00000013337)	OR2AE1 (ENSCHIG00000010371)	ENSCHIG00000009100	CYP3A76 (ENSCHIG00000022924)	CYP3A24 (ENSCHIG00000012426)	ZSCAN25 (ENSCHIG00000023626)	TMEM225B (ENSCHIG00000014873)	ENSCHIG00000023445	ZNF655 (ENSCHIG00000025621)
Rambouillet Sheep	MODERN SPECIES	16	ZCWPW1 (ENSOARG00020018449)	ENSOARG00020018614	PVRIG (ENSOARG00020018895)	ENSOARG00020018953	STAG3 (ENSOARG00020019015)	GPC2 (ENSOARG00020019612)	GAL3ST4 (ENSOARG00020019716)	TRAPPC14 (ENSOARG00020019755)	LAMTOR4 (ENSOARG00020019892)	ENSOARG00020020032	ENSOARG00020020081	MBLAC1 (ENSOARG00020020170)	CNPY4 (ENSOARG00020020189)	TAF6 (ENSOARG00020020233)	AP4M1 (ENSOARG00020020434)	MCM7 (ENSOARG00020020563) ##22	COPS6 (ENSOARG00020020732)	ZNF3 (ENSOARG00020020856)	ZSCAN21 (ENSOARG00020020878)	ZKSCAN1 (ENSOARG00020020918)	AZGP1 (ENSOARG00020020969)	GJC3 (ENSOARG00020021018)	TRIM4 (ENSOARG00020021045)	OR2AE1 (ENSOARG00020021194)	ENSOARG00020021224	ENSOARG00020021338	CYP3A24 (ENSOARG00020021603)	ENSOARG00020021858	ZSCAN25 (ENSOARG00020021884)	TMEM225B (ENSOARG00020021911)	ZNF655 (ENSOARG00020021933)
Bovinae	ANCESTRAL SPECIES	7	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00760000119441
Bos	ANCESTRAL SPECIES	9	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00760000119441
Bos_a	ANCESTRAL SPECIES	35	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00940000163799	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.a	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00760000119441	ENSGT00940000164024
Wild yak	MODERN SPECIES	538	MEPCE (ENSBMUG00000000070)	ZCWPW1 (ENSBMUG00000024025)	ENSBMUG00000024012	STAG3 (ENSBMUG00000023966)	ENSBMUG00000023857	ENSBMUG00000023844	GAL3ST4 (ENSBMUG00000023833)	TRAPPC14 (ENSBMUG00000023798)	LAMTOR4 (ENSBMUG00000023765)	ENSBMUG00000023737	ENSBMUG00000023725	MBLAC1 (ENSBMUG00000023714)	CNPY4 (ENSBMUG00000023707)	TAF6 (ENSBMUG00000023696)	AP4M1 (ENSBMUG00000023677)	MCM7 (ENSBMUG00000023654) ##22	COPS6 (ENSBMUG00000023611)	ZNF3 (ENSBMUG00000023602)	ZSCAN21 (ENSBMUG00000023591)	ZKSCAN1 (ENSBMUG00000023567)	AZGP1 (ENSBMUG00000023550)	GJC3 (ENSBMUG00000023542)	TRIM4 (ENSBMUG00000023538)	OR2AE1 (ENSBMUG00000023533)	ENSBMUG00000023477	ENSBMUG00000023367	ZSCAN25 (ENSBMUG00000023364)	TMEM225B (ENSBMUG00000023356)	ENSBMUG00000023294	ZNF655 (ENSBMUG00000023339)	FAM200A (ENSBMUG00000023277)
Domestic yak	MODERN SPECIES	18	ENSBGRG00000017711	STAG3 (ENSBGRG00000017743)	ENSBGRG00000017880	GPC2 (ENSBGRG00000017945)	GAL3ST4 (ENSBGRG00000018045)	TRAPPC14 (ENSBGRG00000018102)	LAMTOR4 (ENSBGRG00000018274)	ENSBGRG00000018445	ENSBGRG00000018639	ENSBGRG00000018661	MBLAC1 (ENSBGRG00000018693)	CNPY4 (ENSBGRG00000018717)	TAF6 (ENSBGRG00000018806)	AP4M1 (ENSBGRG00000018946)	ENSBGRG00000019443	MCM7 (ENSBGRG00000019501) ##22	COPS6 (ENSBGRG00000019686)	ZNF3 (ENSBGRG00000019869)	ZSCAN21 (ENSBGRG00000019926)	ZKSCAN1 (ENSBGRG00000019980)	AZGP1 (ENSBGRG00000020033)	GJC3 (ENSBGRG00000020166)	TRIM4 (ENSBGRG00000020221)	ENSBGRG00000020414	ENSBGRG00000022004	ZSCAN25 (ENSBGRG00000023712)	ENSBGRG00000023765	ZNF655 (ENSBGRG00000023838)	FAM200A (ENSBGRG00000023967)	ZNF789 (ENSBGRG00000023983)	ENSBGRG00000024016
Bos_b	ANCESTRAL SPECIES	6	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.b	ENSGT00950000182958.a.b.b.j.k.a.b.b.a.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200.a	ENSGT00760000119441
Hybrid Bos Indicus	MODERN SPECIES	17	PVRIG (ENSBIXG00005001473)	STAG3 (ENSBIXG00005001502)	GPC2 (ENSBIXG00005013178)	GAL3ST4 (ENSBIXG00005013193)	TRAPPC14 (ENSBIXG00005013230)	LAMTOR4 (ENSBIXG00005013266)	ENSBIXG00005001532	ENSBIXG00005013286	MBLAC1 (ENSBIXG00005001572)	TAF6 (ENSBIXG00005013340)	AP4M1 (ENSBIXG00005013370)	COPS6 (ENSBIXG00005013426)	ZNF3 (ENSBIXG00005013463)	ZSCAN21 (ENSBIXG00005013481)	ZKSCAN1 (ENSBIXG00005013527)	MCM7 (ENSBIXG00005013643) ##22	AZGP1 (ENSBIXG00005001680)	GJC3 (ENSBIXG00005007449)	TRIM4 (ENSBIXG00005013728)	OR2AE1 (ENSBIXG00005013738)	ENSBIXG00005013966	ENSBIXG00005014091	ENSBIXG00005014112	ZSCAN25 (ENSBIXG00005014135)	ENSBIXG00005014162	ENSBIXG00005014180	ZNF655 (ENSBIXG00005014236)	FAM200A (ENSBIXG00005014258)	ZNF789 (ENSBIXG00005014273)	ENSBIXG00005014283	ZKSCAN5 (ENSBIXG00005001885)
Cow	MODERN SPECIES	17	PPP1R35 (ENSBTAG00000026243)	MEPCE (ENSBTAG00000016763)	ZCWPW1 (ENSBTAG00000001068)	PILRA (ENSBTAG00000001066)	PVRIG (ENSBTAG00000010521)	STAG3 (ENSBTAG00000010496)	GPC2 (ENSBTAG00000008869)	GAL3ST4 (ENSBTAG00000015017)	TRAPPC14 (ENSBTAG00000015011)	LAMTOR4 (ENSBTAG00000015009)	ENSBTAG00000011470	ENSBTAG00000052147	CNPY4 (ENSBTAG00000007016)	TAF6 (ENSBTAG00000030966)	AP4M1 (ENSBTAG00000002881)	MCM7 (ENSBTAG00000030965) ##22	COPS6 (ENSBTAG00000002871)	ZNF3 (ENSBTAG00000007012)	ZKSCAN1 (ENSBTAG00000016757)	AZGP1 (ENSBTAG00000026236)	GJC3 (ENSBTAG00000038074)	TRIM4 (ENSBTAG00000050135)	OR2AE1 (ENSBTAG00000009840)	CYP3A28 (ENSBTAG00000049666)	CYP3A74 (ENSBTAG00000052665)	CYP3A76 (ENSBTAG00000053645)	CYP3A24 (ENSBTAG00000054260)	ZSCAN25 (ENSBTAG00000039512)	TMEM225B (ENSBTAG00000039720)	ZNF655 (ENSBTAG00000030951)	FAM200A (ENSBTAG00000051481)
American bison	MODERN SPECIES	3126												MBLAC1 (ENSBBBG00000014938)	CNPY4 (ENSBBBG00000014935)	TAF6 (ENSBBBG00000014931)	ENSBBBG00000000849	MCM7 (ENSBBBG00000000882) ##22	COPS6 (ENSBBBG00000000983)	ZNF3 (ENSBBBG00000001007)	ZSCAN21 (ENSBBBG00000001025)	ZKSCAN1 (ENSBBBG00000001035)	AZGP1 (ENSBBBG00000001062)	GJC3 (ENSBBBG00000001079)	TRIM4 (ENSBBBG00000001089)
Camelidae	ANCESTRAL SPECIES	24	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.l.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000163495	ENSGT00940000162299	ENSGT00940000162347
Alpaca	MODERN SPECIES	1802															ENSVPAG00000015507	MCM7 (ENSVPAG00000009118) ##22	COPS6 (ENSVPAG00000009116)
Arabian camel	MODERN SPECIES	9	SPACDR (ENSCDRG00005016825)	PPP1R35 (ENSCDRG00005016846)	MEPCE (ENSCDRG00005016855)	ZCWPW1 (ENSCDRG00005016923)	ENSCDRG00005017261	PVRIG (ENSCDRG00005017290)	STAG3 (ENSCDRG00005017313)	ENSCDRG00005017396	ENSCDRG00005017420	GAL3ST4 (ENSCDRG00005008794)	TRAPPC14 (ENSCDRG00005008828)	LAMTOR4 (ENSCDRG00005009006)	CNPY4 (ENSCDRG00005009303)	TAF6 (ENSCDRG00005009379)	AP4M1 (ENSCDRG00005009572)	MCM7 (ENSCDRG00005009675) ##22	COPS6 (ENSCDRG00005009858)	ZNF3 (ENSCDRG00005010023)	ZSCAN21 (ENSCDRG00005010056)	ZKSCAN1 (ENSCDRG00005010091)	AZGP1 (ENSCDRG00005010168)	GJC3 (ENSCDRG00005010244)	TRIM4 (ENSCDRG00005010273)	OR2AE1 (ENSCDRG00005010384)	ENSCDRG00005010414	ENSCDRG00005010591	ENSCDRG00005010643	ENSCDRG00005010679	ENSCDRG00005010801	ENSCDRG00005010827	ENSCDRG00005010875
Suina	ANCESTRAL SPECIES	31	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00960000187165	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000183069.a.a
Chacoan peccary	MODERN SPECIES	893	PPP1R35 (ENSCWAG00000013014)	MEPCE (ENSCWAG00000013070)	ZCWPW1 (ENSCWAG00000013132)	ENSCWAG00000013409	PVRIG (ENSCWAG00000013707)	STAG3 (ENSCWAG00000013814)	GPC2 (ENSCWAG00000014643)	GAL3ST4 (ENSCWAG00000014748)	ENSCWAG00000014790	TRAPPC14 (ENSCWAG00000014926)	ENSCWAG00000015094	MBLAC1 (ENSCWAG00000015138)	CNPY4 (ENSCWAG00000015151)	TAF6 (ENSCWAG00000015179)	AP4M1 (ENSCWAG00000015217)	MCM7 (ENSCWAG00000015272) ##22	COPS6 (ENSCWAG00000015437)	ZNF3 (ENSCWAG00000015506)	ZSCAN21 (ENSCWAG00000015557)	ZKSCAN1 (ENSCWAG00000015596)	AZGP1 (ENSCWAG00000015641)	GJC3 (ENSCWAG00000015698)	TRIM4 (ENSCWAG00000015714)	OR2AE1 (ENSCWAG00000015760)
Pig	MODERN SPECIES	11	ZCWPW1 (ENSSSCG00000007659)	ENSSSCG00000026653	PVRIG (ENSSSCG00000007656)	STAG3 (ENSSSCG00000007650)	GPC2 (ENSSSCG00000007649)	GAL3ST4 (ENSSSCG00000007648)	TRAPPC14 (ENSSSCG00000007647)	ENSSSCG00000007646	ENSSSCG00000007645	ENSSSCG00000007644	ENSSSCG00000025271	MBLAC1 (ENSSSCG00000034092)	CNPY4 (ENSSSCG00000032054)	TAF6 (ENSSSCG00000034153)	AP4M1 (ENSSSCG00000034288)	MCM7 (ENSSSCG00000032180) ##22	COPS6 (ENSSSCG00000034893)	ZNF3 (ENSSSCG00000037215)	ENSSSCG00000021941	ZKSCAN1 (ENSSSCG00000031461)	ENSSSCG00000007642	GJC3 (ENSSSCG00000007636)	TRIM4 (ENSSSCG00000007637)	ENSSSCG00000059096	ENSSSCG00000057589	ENSSSCG00000007631	ENSSSCG00000061359	ENSSSCG00000007639	ENSSSCG00000055686	ENSSSCG00000060711	PLA2G10 (ENSSSCG00000040569)
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00940000165768	ENSGT00940000154740.a.a.c.b	ENSGT00950000182890.B.b
Carnivora	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b	ENSGT00950000182958.a.b.b.j.i.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024
Felidae	ANCESTRAL SPECIES	19	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.r	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.q	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.o	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.j	ENSGT00950000182958.a.b.b.j.i.a.h	ENSGT00950000182958.a.b.b.j.i.a.g	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024
Panthera	ANCESTRAL SPECIES	27	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.q	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929.e	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.o	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.j	ENSGT00950000182958.a.b.b.j.i.a.h	ENSGT00950000182958.a.b.b.j.i.a.g	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.q	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929.e	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b.o	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.j	ENSGT00950000182958.a.b.b.j.i.a.h	ENSGT00950000182958.a.b.b.j.i.a.g	ENSGT00940000165702	ENSGT00930000152728.c	ENSGT00950000183014.f.a.h.p	ENSGT00940000162113
leopard	MODERN SPECIES	91	PPP1R35 (ENSPPRG00000001898)	MEPCE (ENSPPRG00000002350)	ZCWPW1 (ENSPPRG00000004075)	PVRIG (ENSPPRG00000004947)	STAG3 (ENSPPRG00000011185)	GPC2 (ENSPPRG00000011965)	GAL3ST4 (ENSPPRG00000012231)	TRAPPC14 (ENSPPRG00000013321)	LAMTOR4 (ENSPPRG00000015537)	ENSPPRG00000016493	MBLAC1 (ENSPPRG00000019461)	CNPY4 (ENSPPRG00000017173)	TAF6 (ENSPPRG00000023501)	ENSPPRG00000002459	ENSPPRG00000002694	MCM7 (ENSPPRG00000005906) ##22	COPS6 (ENSPPRG00000006726)	ZNF3 (ENSPPRG00000007170)	ZSCAN21 (ENSPPRG00000007444)	ZKSCAN1 (ENSPPRG00000008519)	AZGP1 (ENSPPRG00000008844)	GJC3 (ENSPPRG00000019800)	TRIM4 (ENSPPRG00000009044)	OR2AE1 (ENSPPRG00000019851)	ENSPPRG00000010396	CYP3A132 (ENSPPRG00000013886)	CYP3A131 (ENSPPRG00000014793)	ENSPPRG00000020116	ENSPPRG00000020127	ENSPPRG00000018011	ZSCAN25 (ENSPPRG00000020661)
lion	MODERN SPECIES	16	PPP1R35 (ENSPLOG00000019170)	MEPCE (ENSPLOG00000019216)	ZCWPW1 (ENSPLOG00000019294)	ENSPLOG00000019466	LAMTOR4 (ENSPLOG00000019568)	TRAPPC14 (ENSPLOG00000019666)	GAL3ST4 (ENSPLOG00000019767)	GPC2 (ENSPLOG00000019810)	STAG3 (ENSPLOG00000020019)	PVRIG (ENSPLOG00000020486)	ENSPLOG00000020516	MBLAC1 (ENSPLOG00000020530)	CNPY4 (ENSPLOG00000020552)	TAF6 (ENSPLOG00000020624)	AP4M1 (ENSPLOG00000020797)	MCM7 (ENSPLOG00000020913) ##22	COPS6 (ENSPLOG00000021153)	ZNF3 (ENSPLOG00000021226)	ZSCAN21 (ENSPLOG00000021246)	ZKSCAN1 (ENSPLOG00000021273)	AZGP1 (ENSPLOG00000021332)	GJC3 (ENSPLOG00000021380)	TRIM4 (ENSPLOG00000021398)	OR2AE1 (ENSPLOG00000021431)	ENSPLOG00000021444	ENSPLOG00000021498	CYP3A131 (ENSPLOG00000021657)	ENSPLOG00000021785	ENSPLOG00000021805	ZSCAN25 (ENSPLOG00000021838)	ENSPLOG00000021878
Tiger	MODERN SPECIES	32	TSC22D4 (ENSPTIG00000015782)	SPACDR (ENSPTIG00000016019)	ENSPTIG00000016100	ZCWPW1 (ENSPTIG00000016293)	PVRIG (ENSPTIG00000017352)	STAG3 (ENSPTIG00000017542)	GPC2 (ENSPTIG00000018544)	GAL3ST4 (ENSPTIG00000019146)	TRAPPC14 (ENSPTIG00000019397)	ENSPTIG00000019703	ENSPTIG00000000328	MBLAC1 (ENSPTIG00000006230)	CNPY4 (ENSPTIG00000001893)	TAF6 (ENSPTIG00000002884)	AP4M1 (ENSPTIG00000005703)	MCM7 (ENSPTIG00000006920) ##22	COPS6 (ENSPTIG00000007612)	ZNF3 (ENSPTIG00000008487)	ZSCAN21 (ENSPTIG00000008916)	ZKSCAN1 (ENSPTIG00000009494)	AZGP1 (ENSPTIG00000009587)	GJC3 (ENSPTIG00000006290)	TRIM4 (ENSPTIG00000009937)	OR2AE1 (ENSPTIG00000006320)
Cat	MODERN SPECIES	247	MEPCE (ENSFCAG00000010803)	ZCWPW1 (ENSFCAG00000010802)	ENSFCAG00000038978	PVRIG (ENSFCAG00000022272)	STAG3 (ENSFCAG00000010798)	GPC2 (ENSFCAG00000010794)	GAL3ST4 (ENSFCAG00000031130)	TRAPPC14 (ENSFCAG00000007873)	LAMTOR4 (ENSFCAG00000026703)	ENSFCAG00000028174	ENSFCAG00000049267	MBLAC1 (ENSFCAG00000042542)	CNPY4 (ENSFCAG00000003566)	TAF6 (ENSFCAG00000003564)	AP4M1 (ENSFCAG00000026277)	MCM7 (ENSFCAG00000003562) ##22	ENSFCAG00000003561	ZNF3 (ENSFCAG00000003560)	ZSCAN21 (ENSFCAG00000029089)	ZKSCAN1 (ENSFCAG00000042679)	GJC3 (ENSFCAG00000015012)	TRIM4 (ENSFCAG00000025749)	ENSFCAG00000023135	CYP3A132 (ENSFCAG00000040455)	CYP3A131 (ENSFCAG00000046713)	ENSFCAG00000025929	ZSCAN25 (ENSFCAG00000006593)	TMEM225B (ENSFCAG00000024064)	ZNF655 (ENSFCAG00000024492)	ZKSCAN5 (ENSFCAG00000026733)	ZNF394 (ENSFCAG00000031324)
Caniformia	ANCESTRAL SPECIES	8	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.b	ENSGT00950000182958.a.b.b.j.i.b.a	ENSGT00950000182958.a.b.b.j.i.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.b	ENSGT00950000182958.a.b.b.j.i.b.a	ENSGT00950000182958.a.b.b.j.i.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441
Ursidae	ANCESTRAL SPECIES	3	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.b	ENSGT00950000182958.a.b.b.j.i.b.a	ENSGT00950000182958.a.b.b.j.i.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000164024
Ursus	ANCESTRAL SPECIES	32	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00390000008831.k	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.l	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.b	ENSGT00950000182958.a.b.b.j.i.b.a	ENSGT00950000182958.a.b.b.j.i.a	ENSGT00940000162113	ENSGT00510000055200	ENSGT00760000119441	ENSGT00940000165768
American black bear	MODERN SPECIES	2365												MBLAC1 (ENSUAMG00000008679)	CNPY4 (ENSUAMG00000008680)	TAF6 (ENSUAMG00000008690)	AP4M1 (ENSUAMG00000008929)	MCM7 (ENSUAMG00000008934) ##22	COPS6 (ENSUAMG00000008950)	ZNF3 (ENSUAMG00000008955)	ZSCAN21 (ENSUAMG00000008960)	ZKSCAN1 (ENSUAMG00000008961)	AZGP1 (ENSUAMG00000008965)
Polar bear	MODERN SPECIES	212	MEPCE (ENSUMAG00000010719)	ENSUMAG00000010710	PVRIG (ENSUMAG00000010707)	STAG3 (ENSUMAG00000010678)	ENSUMAG00000010669	ENSUMAG00000010663	GAL3ST4 (ENSUMAG00000010652)	TRAPPC14 (ENSUMAG00000010622)	LAMTOR4 (ENSUMAG00000010613)	ENSUMAG00000010604	ENSUMAG00000010594	MBLAC1 (ENSUMAG00000010588)	CNPY4 (ENSUMAG00000010584)	TAF6 (ENSUMAG00000010552)	AP4M1 (ENSUMAG00000010444)	MCM7 (ENSUMAG00000010015) ##22	COPS6 (ENSUMAG00000009970)	ZNF3 (ENSUMAG00000009969)	ZSCAN21 (ENSUMAG00000009965)	ZKSCAN1 (ENSUMAG00000009962)	AZGP1 (ENSUMAG00000009958)	GJC3 (ENSUMAG00000009957)	TRIM4 (ENSUMAG00000009953)	OR2AE1 (ENSUMAG00000009952)	ENSUMAG00000009839	ENSUMAG00000009725	ENSUMAG00000009516	ZSCAN25 (ENSUMAG00000009498)	ENSUMAG00000009495	ENSUMAG00000009492	FAM200A (ENSUMAG00000009489)
Giant Panda	MODERN SPECIES	1	TSC22D4 (ENSAMEG00000024092)	ENSAMEG00000015035	ENSAMEG00000015049	ENSAMEG00000015075	STAG3 (ENSAMEG00000015079)	GPC2 (ENSAMEG00000015203)	GAL3ST4 (ENSAMEG00000015219)	TRAPPC14 (ENSAMEG00000014983)	LAMTOR4 (ENSAMEG00000015227)	ENSAMEG00000015233	ENSAMEG00000015070	MBLAC1 (ENSAMEG00000019313)	CNPY4 (ENSAMEG00000011070)	TAF6 (ENSAMEG00000011082)	AP4M1 (ENSAMEG00000011117)	ENSAMEG00000011150 ##22	COPS6 (ENSAMEG00000011206)	ENSAMEG00000011233	ENSAMEG00000011241	ENSAMEG00000011243	ENSAMEG00000011252	ENSAMEG00000019483	ENSAMEG00000031466	ENSAMEG00000004376	ZSCAN25 (ENSAMEG00000028606)	TMEM225B (ENSAMEG00000006209)	ZNF655 (ENSAMEG00000006210)	FAM200A (ENSAMEG00000030624)	ZKSCAN5 (ENSAMEG00000006213)	ZNF394 (ENSAMEG00000024236)	ZNF789 (ENSAMEG00000006221)
Mustelinae	ANCESTRAL SPECIES	41	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.b	ENSGT00950000182958.a.b.b.j.i.b.a
Ferret	MODERN SPECIES	596												MBLAC1 (ENSMPUG00000019892)	CNPY4 (ENSMPUG00000010847)	TAF6 (ENSMPUG00000010870)	AP4M1 (ENSMPUG00000010875)	MCM7 (ENSMPUG00000010881) ##22	COPS6 (ENSMPUG00000010887)	ENSMPUG00000010891	ZSCAN21 (ENSMPUG00000010896)	ZKSCAN1 (ENSMPUG00000010898)	AZGP1 (ENSMPUG00000010904)	ENSMPUG00000019894	TRIM4 (ENSMPUG00000010906)	OR2AE1 (ENSMPUG00000019896)	ENSMPUG00000010918	ENSMPUG00000010954
American mink	MODERN SPECIES	102	ZCWPW1 (ENSNVIG00000000812)	ENSNVIG00000000768	ENSNVIG00000000757	PVRIG (ENSNVIG00000000743)	STAG3 (ENSNVIG00000000537)	ENSNVIG00000000527	ENSNVIG00000000522	GAL3ST4 (ENSNVIG00000000509)	TRAPPC14 (ENSNVIG00000000488)	LAMTOR4 (ENSNVIG00000000476)	ENSNVIG00000000455	MBLAC1 (ENSNVIG00000000446)	CNPY4 (ENSNVIG00000000435)	TAF6 (ENSNVIG00000000309)	AP4M1 (ENSNVIG00000000228)	MCM7 (ENSNVIG00000000161) ##22	COPS6 (ENSNVIG00000000137)	ZNF3 (ENSNVIG00000000097)	ZSCAN21 (ENSNVIG00000000082)	ZKSCAN1 (ENSNVIG00000000053)	AZGP1 (ENSNVIG00000000047)	GJC3 (ENSNVIG00000000046)	TRIM4 (ENSNVIG00000000033)	ENSNVIG00000022670	ENSNVIG00000022662	ENSNVIG00000022658	ENSNVIG00000022639	ENSNVIG00000022618
Canidae	ANCESTRAL SPECIES	3	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.p	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.o	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330.b	ENSGT01090000260018.B.b	ENSGT00950000182958.a.b.b.j.i.b.a.d	ENSGT00950000182958.a.b.b.j.i.b.a.c	ENSGT00950000182958.a.b.b.j.i.a.f.a	ENSGT00950000182958.a.b.b.j.i.a.e	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831.p	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000008831.o	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a.a	ENSGT00940000163330.a	ENSGT01090000260018.B.b.o	ENSGT00950000182958.a.b.b.j.i.b.a.d	ENSGT00950000182958.a.b.b.j.i.b.a.c	ENSGT00950000182958.a.b.b.j.i.a.f.a.b	ENSGT00950000182958.a.b.b.j.i.a.e	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200
Dingo	MODERN SPECIES	351	ZCWPW1 (ENSCAFG00020014025)	ENSCAFG00020014050	PVRIG (ENSCAFG00020014054)	STAG3 (ENSCAFG00020014060)	ENSCAFG00020014083	ENSCAFG00020014089	GAL3ST4 (ENSCAFG00020014096)	TRAPPC14 (ENSCAFG00020014099)	ENSCAFG00020014105	ENSCAFG00020014108	ENSCAFG00020014111	MBLAC1 (ENSCAFG00020014116)	CNPY4 (ENSCAFG00020014119)	TAF6 (ENSCAFG00020014123)	AP4M1 (ENSCAFG00020014130)	MCM7 (ENSCAFG00020014136) ##22	COPS6 (ENSCAFG00020014156)	ZNF3 (ENSCAFG00020014270)	ZSCAN21 (ENSCAFG00020014273)	ZKSCAN1 (ENSCAFG00020014275)	AZGP1 (ENSCAFG00020014282)	GJC3 (ENSCAFG00020014284)	TRIM4 (ENSCAFG00020014286)	OR2AE1 (ENSCAFG00020014287)	ENSCAFG00020014292	ENSCAFG00020014350	ENSCAFG00020014417	ENSCAFG00020014437	ENSCAFG00020014443	ZSCAN25 (ENSCAFG00020014447)	TMEM225B (ENSCAFG00020014448)
Dog	MODERN SPECIES	34	TSC22D4 (ENSCAFG00845001911)	PPP1R35 (ENSCAFG00845001962)	MEPCE (ENSCAFG00845001979)	ZCWPW1 (ENSCAFG00845002111)	ENSCAFG00845002176	PVRIG (ENSCAFG00845002201)	STAG3 (ENSCAFG00845002250)	GPC2 (ENSCAFG00845002364)	GAL3ST4 (ENSCAFG00845002407)	ENSCAFG00845002448	LAMTOR4 (ENSCAFG00845002509)	ENSCAFG00845002530	MBLAC1 (ENSCAFG00845002546)	TAF6 (ENSCAFG00845002570)	AP4M1 (ENSCAFG00845002625)	MCM7 (ENSCAFG00845002696) ##22	COPS6 (ENSCAFG00845002799)	ENSCAFG00845002817	ENSCAFG00845002833	ZKSCAN1 (ENSCAFG00845002866)	AZGP1 (ENSCAFG00845002917)	ENSCAFG00845002934	TRIM4 (ENSCAFG00845002953)	OR2AE1 (ENSCAFG00845002965)	CYP3A26 (ENSCAFG00845003103)	OR1F15 (ENSCAFG00845003253)	ENSCAFG00845003272	TMEM225B (ENSCAFG00845003304)	ZNF655 (ENSCAFG00845003343)	FAM200A (ENSCAFG00845003383)	ZKSCAN5 (ENSCAFG00845003412)
Red fox	MODERN SPECIES	164	MEPCE (ENSVVUG00000023418)	ZCWPW1 (ENSVVUG00000023416)	ENSVVUG00000023411	PVRIG (ENSVVUG00000023410)	STAG3 (ENSVVUG00000023385)	GPC2 (ENSVVUG00000023372)	GAL3ST4 (ENSVVUG00000023368)	TRAPPC14 (ENSVVUG00000023364)	ENSVVUG00000023360	ENSVVUG00000023358	ENSVVUG00000023355	MBLAC1 (ENSVVUG00000023353)	CNPY4 (ENSVVUG00000023343)	TAF6 (ENSVVUG00000023336)	AP4M1 (ENSVVUG00000023330)	MCM7 (ENSVVUG00000023319) ##22	COPS6 (ENSVVUG00000023316)	ZNF3 (ENSVVUG00000023315)	ZSCAN21 (ENSVVUG00000023312)	ZKSCAN1 (ENSVVUG00000023308)	AZGP1 (ENSVVUG00000023299)	GJC3 (ENSVVUG00000023296)	TRIM4 (ENSVVUG00000023285)	OR2AE1 (ENSVVUG00000023280)	ENSVVUG00000023227	ENSVVUG00000014002	ENSVVUG00000013798
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.h.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299
Equus	ANCESTRAL SPECIES	22	ENSGT00390000008831.u.a	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b.q	ENSGT00950000182866.D.d.b.r	ENSGT00390000008831.u.b	ENSGT00390000008831.v	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT01050000245239.e.a	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01050000244868.a.a.a.a.a.b.m.b	ENSGT00940000157317	ENSGT01090000260018.B.b.m.a.a.b	ENSGT01090000260018.B.b.m.a.a.a	ENSGT00950000182958.a.b.b.j.g.b	ENSGT00950000182958.a.b.b.j.h.b.b.b	ENSGT01080000259722
Donkey	MODERN SPECIES	5	ZCWPW1 (ENSEASG00005017081)	ENSEASG00005017091	ENSEASG00005017094	STAG3 (ENSEASG00005017210)	GPC2 (ENSEASG00005030894)	GAL3ST4 (ENSEASG00005018926)	LAMTOR4 (ENSEASG00005027179)	TRAPPC14 (ENSEASG00005018927)	ENSEASG00005028702	ENSEASG00005018932 ##27	ENSEASG00005018935	MBLAC1 (ENSEASG00005036677)	CNPY4 (ENSEASG00005018940)	TAF6 (ENSEASG00005018943)	AP4M1 (ENSEASG00005018948)	MCM7 (ENSEASG00005018953) ##22	COPS6 (ENSEASG00005018961)	ZNF3 (ENSEASG00005024752)	ENSEASG00005028758	ENSEASG00005018972	ZKSCAN1 (ENSEASG00005018973)	ENSEASG00005018976	ENSEASG00005018980	ENSEASG00005018981	ENSEASG00005000059	ENSEASG00005013055	ENSEASG00005013075	ENSEASG00005013076	ENSEASG00005013077	ENSEASG00005007568	ENSEASG00005003366
Horse	MODERN SPECIES	4	ENSECAG00000033857	PVRIG (ENSECAG00000020068)	STAG3 (ENSECAG00000012736)	GPC2 (ENSECAG00000008170)	TRAPPC14 (ENSECAG00000035321)	ENSECAG00000006312	ENSECAG00000034468	ENSECAG00000052107	ENSECAG00000032598	ENSECAG00000049215	ENSECAG00000021110	MBLAC1 (ENSECAG00000046596)	CNPY4 (ENSECAG00000057972)	TAF6 (ENSECAG00000008522)	AP4M1 (ENSECAG00000016103)	MCM7 (ENSECAG00000015149) ##22	COPS6 (ENSECAG00000008997)	ZNF3 (ENSECAG00000024649)	ENSECAG00000034869	ENSECAG00000029765	ENSECAG00000030390	ZSCAN21 (ENSECAG00000054193)	ZKSCAN1 (ENSECAG00000030386)	AZGP1 (ENSECAG00000014927)	GJC3 (ENSECAG00000006102)	TRIM4 (ENSECAG00000014342)	ENSECAG00000051063	ENSECAG00000053562	ENSECAG00000008816	RCC1L (ENSECAG00000021984)	OR2AE1C (ENSECAG00000029942)
Chiroptera	ANCESTRAL SPECIES	37	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.h.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299
Megabat	MODERN SPECIES	1198																MCM7 (ENSPVAG00000005189) ##22	COPS6 (ENSPVAG00000005186)	ZNF3 (ENSPVAG00000005182)	ZSCAN21 (ENSPVAG00000005181)	ZKSCAN1 (ENSPVAG00000005176)	ENSPVAG00000005175	TRIM4 (ENSPVAG00000005173)
Microchiroptera	ANCESTRAL SPECIES	39	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT00950000182958.a.b.b.j.h.a	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000164024	ENSGT00940000162299
Microbat	MODERN SPECIES	937	MEPCE (ENSMLUG00000009678)	ZCWPW1 (ENSMLUG00000009644)	STAG3 (ENSMLUG00000017433)	GPC2 (ENSMLUG00000017431)	GAL3ST4 (ENSMLUG00000028836)	TRAPPC14 (ENSMLUG00000017428)	LAMTOR4 (ENSMLUG00000017427)	ENSMLUG00000030457	ENSMLUG00000022938	ENSMLUG00000029521	ENSMLUG00000005690	MBLAC1 (ENSMLUG00000026709)	CNPY4 (ENSMLUG00000016733)	ENSMLUG00000014161	AP4M1 (ENSMLUG00000014158)	MCM7 (ENSMLUG00000014145) ##22	COPS6 (ENSMLUG00000014139)	ZNF3 (ENSMLUG00000004466)	ENSMLUG00000014154	ENSMLUG00000014153	ENSMLUG00000026717	ENSMLUG00000029391	GJC3 (ENSMLUG00000002012)	TRIM4 (ENSMLUG00000001995)	ENSMLUG00000026442	ENSMLUG00000024696	ENSMLUG00000027083	ENSMLUG00000017353	TMEM225B (ENSMLUG00000023300)	ENSMLUG00000017351	ENSMLUG00000017349
Greater horseshoe bat	MODERN SPECIES	25	MEPCE (ENSRFEG00010003432)	ZCWPW1 (ENSRFEG00010003404)	ENSRFEG00010003372	ENSRFEG00010003343	STAG3 (ENSRFEG00010003326)	GPC2 (ENSRFEG00010003296)	GAL3ST4 (ENSRFEG00010003269)	TRAPPC14 (ENSRFEG00010003238)	LAMTOR4 (ENSRFEG00010003193)	ENSRFEG00010003154	ENSRFEG00010003095	ENSRFEG00010002984	CNPY4 (ENSRFEG00010002959)	TAF6 (ENSRFEG00010002915)	AP4M1 (ENSRFEG00010002882)	MCM7 (ENSRFEG00010002803) ##22	COPS6 (ENSRFEG00010002750)	ZNF3 (ENSRFEG00010002738)	ZSCAN21 (ENSRFEG00010002722)	ZKSCAN1 (ENSRFEG00010002707)	AZGP1 (ENSRFEG00010002692)	GJC3 (ENSRFEG00010002682)	ENSRFEG00010002670	TRIM4 (ENSRFEG00010002653)	ENSRFEG00010002619	ENSRFEG00010002590	ENSRFEG00010002456	ENSRFEG00010002337	ZSCAN25 (ENSRFEG00010002331)	TMEM225B (ENSRFEG00010002313)	ENSRFEG00010002302
Atlantogenata	ANCESTRAL SPECIES	21	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000016053	ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00980000198710	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00950000182890.B.b	ENSGT00760000119441	ENSGT00940000162299
Afrotheria	ANCESTRAL SPECIES	103	ENSGT00940000163992	ENSGT00940000161071	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00940000154740.a.a.c.b	ENSGT00940000162347	ENSGT00760000119441	ENSGT00940000162299
Afrotheria_a	ANCESTRAL SPECIES	103	ENSGT00890000139453.a	ENSGT00940000161400	ENSGT00460000041667	ENSGT00390000004198	ENSGT00940000153993.A	ENSGT00560000077278.a	ENSGT00390000008831	ENSGT00390000017799	ENSGT00950000182972.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182923.B.b	ENSGT00390000014725	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000153104.e.b.b	ENSGT00940000161607	ENSGT00940000161592	ENSGT01100000263517.b.d.m.b.a.a	ENSGT01090000260005.a.a.a.a	ENSGT01090000260018.B.b	ENSGT00940000165702	ENSGT00940000162113	ENSGT00510000055200	ENSGT00940000154740.a.a.c.b	ENSGT00940000162347	ENSGT00760000119441	ENSGT00940000162299
Elephant	MODERN SPECIES	111	AGFG2 (ENSLAFG00000016974)	NYAP1 (ENSLAFG00000021541)	TSC22D4 (ENSLAFG00000022080)	PPP1R35 (ENSLAFG00000026540)	MEPCE (ENSLAFG00000012347)	ZCWPW1 (ENSLAFG00000026355)	ENSLAFG00000028176	PVRIG (ENSLAFG00000031886)	STAG3 (ENSLAFG00000014010)	GPC2 (ENSLAFG00000023228)	GAL3ST4 (ENSLAFG00000021650)	TRAPPC14 (ENSLAFG00000008486)	CNPY4 (ENSLAFG00000014620)	TAF6 (ENSLAFG00000013349)	AP4M1 (ENSLAFG00000022221)	MCM7 (ENSLAFG00000017252) ##22	COPS6 (ENSLAFG00000017244)	ZNF3 (ENSLAFG00000014618)	ENSLAFG00000016162	ZKSCAN1 (ENSLAFG00000015561)	AZGP1 (ENSLAFG00000020942)	GJC3 (ENSLAFG00000031947)	ENSLAFG00000027752	ENSLAFG00000032534	ENSLAFG00000031746	ZSCAN25 (ENSLAFG00000031435)	TMEM225B (ENSLAFG00000025842)	ENSLAFG00000017505	ENSLAFG00000014746	ENSLAFG00000008561
Hyrax	MODERN SPECIES	5160													CNPY4 (ENSPCAG00000010542)	TAF6 (ENSPCAG00000010417)	AP4M1 (ENSPCAG00000018882)	MCM7 (ENSPCAG00000010278) ##22	ENSPCAG00000010208
Tenrec	MODERN SPECIES	6130														ENSETEG00000006690	AP4M1 (ENSETEG00000006683)	MCM7 (ENSETEG00000006671) ##22	ENSETEG00000006665
Xenarthra	ANCESTRAL SPECIES	291											ENSGT00950000182866.D.d.b	ENSGT00390000016193	ENSGT00390000014072.B	ENSGT00640000091486.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00980000198710	ENSGT00940000161607	ENSGT00940000161592	ENSGT01090000260005.a.a.a.a	ENSGT01100000263517.b.d.m.b.a.a	ENSGT00940000163330	ENSGT01090000260018.B.b
Armadillo	MODERN SPECIES	1548										ENSDNOG00000046442	ENSDNOG00000048233	MBLAC1 (ENSDNOG00000047027)	CNPY4 (ENSDNOG00000007931)	TAF6 (ENSDNOG00000007920)	AP4M1 (ENSDNOG00000007911)	MCM7 (ENSDNOG00000007903) ##22	COPS6 (ENSDNOG00000004397)	ENSDNOG00000010382	ZSCAN21 (ENSDNOG00000001868)	ZKSCAN1 (ENSDNOG00000001864)	ENSDNOG00000046531	AZGP1 (ENSDNOG00000048337)	ENSDNOG00000001942	TRIM4 (ENSDNOG00000041714)	ENSDNOG00000045414	ENSDNOG00000036430	ENSDNOG00000038820	ARGLU1 (ENSDNOG00000034591)	EFNB2 (ENSDNOG00000041560)	ENSDNOG00000037608	ENSDNOG00000046506
Sloth	MODERN SPECIES	5601															AP4M1 (ENSCHOG00000004137)	ENSCHOG00000004127 ##22	COPS6 (ENSCHOG00000004117)
Sauria	ANCESTRAL SPECIES	64	ENSGT00940000162489.c	ENSGT01090000261072	ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000014072.B	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000157637.b
Lepidosauria	ANCESTRAL SPECIES	137				ENSGT00940000156128.a	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT01050000244897.a.a.a	ENSGT00950000182866.D.d.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Episquamata	ANCESTRAL SPECIES	1	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT01060000251788	ENSGT00550000074997	ENSGT00940000155154.b.i.a	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Toxicofera	ANCESTRAL SPECIES	44	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT00940000155154.b.i.a	ENSGT01060000251788	ENSGT00550000074997	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Elapidae	ANCESTRAL SPECIES	46	ENSGT00530000064134.a.b	ENSGT00940000161464	ENSGT00940000159376	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT01060000251788	ENSGT00550000074997	ENSGT00390000018016	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Elapidae_a	ANCESTRAL SPECIES	99	ENSGT00530000064134.a.b	ENSGT00940000161464	ENSGT00940000159376	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT01060000251788	ENSGT00550000074997	ENSGT00390000018016	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Acanthophiinae	ANCESTRAL SPECIES	97	ENSGT00530000064134.a.b	ENSGT00940000161464	ENSGT00940000159376	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT01060000251788	ENSGT00550000074997	ENSGT00390000018016	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Mainland tiger snake	MODERN SPECIES	348	SLC12A5 (ENSNSUG00000002879)	NCOA5 (ENSNSUG00000004546)	CD40 (ENSNSUG00000004547)	CDH22 (ENSNSUG00000004550)	SLC35C2 (ENSNSUG00000004563)	ELMO2 (ENSNSUG00000004566)	SNRPB (ENSNSUG00000004578)	ENSNSUG00000004580	DDX27 (ENSNSUG00000004586)	ENSNSUG00000004657	TGM5 (ENSNSUG00000004659)	TGM6 (ENSNSUG00000004741)	TGM3 (ENSNSUG00000004743)	STAG3 (ENSNSUG00000004745)	AP4M1 (ENSNSUG00000004760)	MCM7 (ENSNSUG00000004764) ##22	COPS6 (ENSNSUG00000004765)	ENSNSUG00000004766
Eastern brown snake	MODERN SPECIES	182	SLC12A5 (ENSPTXG00000017904)	NCOA5 (ENSPTXG00000017901)	CD40 (ENSPTXG00000017898)	CDH22 (ENSPTXG00000017896)	SLC35C2 (ENSPTXG00000017894)	ELMO2 (ENSPTXG00000017368)	SNRPB (ENSPTXG00000017363)	DDX27 (ENSPTXG00000017346)	ENSPTXG00000017331	TGM5 (ENSPTXG00000017311)	ENSPTXG00000017105	TGM3 (ENSPTXG00000017079)	ENSPTXG00000017069	ENSPTXG00000017066	AP4M1 (ENSPTXG00000017060)	MCM7 (ENSPTXG00000017055) ##22	COPS6 (ENSPTXG00000017053)	ENSPTXG00000017050
Blue-lipped sea krait	MODERN SPECIES	4629														ENSLLTG00000010146	AP4M1 (ENSLLTG00000008668)	MCM7 (ENSLLTG00000008577) ##22	COPS6 (ENSLLTG00000008537)
Indian cobra	MODERN SPECIES	2	ENSNNAG00000014392	CDH22 (ENSNNAG00000014342)	SLC35C2 (ENSNNAG00000014325)	ELMO2 (ENSNNAG00000013977)	ENSNNAG00000013936	SNRPB (ENSNNAG00000013898)	DDX27 (ENSNNAG00000013746)	ENSNNAG00000013706	TGM5 (ENSNNAG00000013255)	TGM6 (ENSNNAG00000013174)	TGM3 (ENSNNAG00000013143)	ENSNNAG00000013114	ENSNNAG00000013099	ENSNNAG00000013085	AP4M1 (ENSNNAG00000012991)	MCM7 (ENSNNAG00000012963) ##22	COPS6 (ENSNNAG00000012917)	ENSNNAG00000012899	DUSP15 (ENSNNAG00000012860)	TTLL9 (ENSNNAG00000012825)	PDRG1 (ENSNNAG00000012809)	ENSNNAG00000012792	ENSNNAG00000012771	ENSNNAG00000012763	ENSNNAG00000012760	NOL4L (ENSNNAG00000012749)	ENSNNAG00000012731	ENSNNAG00000012717
Lizard	MODERN SPECIES	1475											ENSACAG00000024453	ENSACAG00000022700	ENSACAG00000011906	AP4M1 (ENSACAG00000012062)	ENSACAG00000034723	MCM7 (ENSACAG00000012205) ##22	ENSACAG00000012409
Laterata	ANCESTRAL SPECIES	14	ENSGT00530000064134.a.b	ENSGT00940000161464	ENSGT00940000159376	ENSGT00510000048078	ENSGT00940000159236	ENSGT00940000155052	ENSGT00550000074997	ENSGT00940000155154.b.i.a	ENSGT00390000018016	ENSGT01050000244866.A.b	ENSGT01050000244866.A.a.b.a	ENSGT01050000244866.A.a.a.a.a.e	ENSGT01050000244866.A.a.a.a.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000009414	CDH22 (ENSPMRG00000009438)	SLC35C2 (ENSPMRG00000009450)	ELMO2 (ENSPMRG00000009457)	SNRPB (ENSPMRG00000009493)	DDX27 (ENSPMRG00000009517)	ZNFX1 (ENSPMRG00000009582)	ENSPMRG00000009591	ENSPMRG00000009611	TGM5 (ENSPMRG00000009653)	ENSPMRG00000009747	ENSPMRG00000009759	ENSPMRG00000009775	ENSPMRG00000009796	AP4M1 (ENSPMRG00000009805)	MCM7 (ENSPMRG00000009830) ##22	COPS6 (ENSPMRG00000009860)	ENSPMRG00000009870
Argentine black and white tegu	MODERN SPECIES	128	ENSSMRG00000019914	CDH22 (ENSSMRG00000019911)	ENSSMRG00000019908	ENSSMRG00000019907	ELMO2 (ENSSMRG00000019905)	SNRPB (ENSSMRG00000019898)	DDX27 (ENSSMRG00000019896)	CCNDBP1 (ENSSMRG00000019895)	EPB42 (ENSSMRG00000019894)	TGM5 (ENSSMRG00000019869)	TGM6 (ENSSMRG00000019862)	TGM3 (ENSSMRG00000019861)	ENSSMRG00000019859	STAG3 (ENSSMRG00000019829)	AP4M1 (ENSSMRG00000019828)	MCM7 (ENSSMRG00000019827) ##22	COPS6 (ENSSMRG00000019826)
tuatara	MODERN SPECIES	1696														ENSSPUG00000016422	ENSSPUG00000016433	MCM7 (ENSSPUG00000016453) ##22	ENSSPUG00000016494	COPS6 (ENSSPUG00000016508)
Archelosauria	ANCESTRAL SPECIES	51	ENSGT00940000160621	ENSGT00970000193372.a.b	ENSGT00910000144784	ENSGT00640000091486.b	ENSGT00390000014072.B	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT00390000010184	ENSGT00390000000527	ENSGT01030000234590.B.a.b	ENSGT00390000009313.i.a
Cryptodira	ANCESTRAL SPECIES	75	ENSGT00940000160621	ENSGT00970000193372.a.b	ENSGT00910000144784	ENSGT00640000091486.b	ENSGT00390000014072.B	ENSGT00390000016193	ENSGT01030000234590.B.a.a	ENSGT00990000213051	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245
Chinese turtle	MODERN SPECIES	1361	NAT16 (ENSPSIG00000017379)	MOGAT3 (ENSPSIG00000016951)	ENSPSIG00000016940	ENSPSIG00000016876	ENSPSIG00000016873	TAF6 (ENSPSIG00000016843)	MBLAC1 (ENSPSIG00000016616)	ENSPSIG00000016307	LAMTOR4 (ENSPSIG00000015985)	TRAPPC14 (ENSPSIG00000015001)	GAL3ST4 (ENSPSIG00000014528)	ENSPSIG00000000340	GPC2 (ENSPSIG00000012456)	STAG3 (ENSPSIG00000011221)	AP4M1 (ENSPSIG00000010959)	MCM7 (ENSPSIG00000009987) ##22	COPS6 (ENSPSIG00000009280)
Testudinoidea	ANCESTRAL SPECIES	84												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245
Testudinidae	ANCESTRAL SPECIES	135												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22
Abingdon island giant tortoise	MODERN SPECIES	197													GPC2 (ENSCABG00000021744)	STAG3 (ENSCABG00000021749)	AP4M1 (ENSCABG00000021758)	MCM7 (ENSCABG00000021759) ##22	ENSCABG00000021782	ENSCABG00000021784	ENSCABG00000021786
Emydidae	ANCESTRAL SPECIES	138													ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164245
painted turtle	MODERN SPECIES	1337													ENSCPBG00000002464	STAG3 (ENSCPBG00000002294)	ENSCPBG00000002255	MCM7 (ENSCPBG00000002240) ##22	ENSCPBG00000002207	COPS6 (ENSCPBG00000002138)	ENSCPBG00000002122	ENSCPBG00000002116	ENSCPBG00000002107
Three-toed box turtle	MODERN SPECIES	1637																MCM7 (ENSTMTG00000019191) ##22
Archosauria	ANCESTRAL SPECIES	59			ENSGT00940000160621	ENSGT00970000193372.a.b	ENSGT00980000200342	ENSGT01030000234582.f.b.g	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT00940000153993.A	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT01030000236529	ENSGT00390000000527
Aves	ANCESTRAL SPECIES	61			ENSGT00940000160621	ENSGT00970000193372.a.b	ENSGT00980000200342	ENSGT01030000234582.f.b.g	ENSGT00640000091486.b	ENSGT00390000016193	ENSGT00940000153993.A	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00730000111225	ENSGT00950000182887.C.a.a.b	ENSGT01030000236529	ENSGT00390000000527
Neognathae	ANCESTRAL SPECIES	45	ENSGT00640000091486.b	ENSGT01030000234582.f.b.g	ENSGT00980000200342	ENSGT00970000193372.a.b	ENSGT00940000160621	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860	ENSGT00990000212021	ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00940000159866	ENSGT00940000160289	ENSGT00940000159372.i.b.a	ENSGT01030000234579.A.a.d	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Neognathae_b	ANCESTRAL SPECIES	40	ENSGT00950000182805.a.a.b.b	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264	ENSGT00940000159528.c	ENSGT00940000161071	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT01030000234579.A.a.d	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Neognathae_c	ANCESTRAL SPECIES	58										ENSGT00390000016053	ENSGT00390000014725	ENSGT00950000182923.B.b	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b
Golden eagle	MODERN SPECIES	64								ENSACCG00020012718	LAMTOR4 (ENSACCG00020012729)	TRAPPC14 (ENSACCG00020012752)	GAL3ST4 (ENSACCG00020012773)	ENSACCG00020012802	ENSACCG00020012819	ENSACCG00020012837	AP4M1 (ENSACCG00020012860)	MCM7 (ENSACCG00020012894) ##22	COPS6 (ENSACCG00020012926)	PELP1 (ENSACCG00020012945)	ARRB2 (ENSACCG00020012987)	ENSACCG00020013022	ZMYND15 (ENSACCG00020013038)	CLDN7 (ENSACCG00020013066)	CTDNEP1 (ENSACCG00020013091)	GABARAP (ENSACCG00020013107)	PHF23 (ENSACCG00020013125)	ACADVL (ENSACCG00020013197)
Passeriformes	ANCESTRAL SPECIES	46	ENSGT00940000153664.A.a	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264	ENSGT00940000159528.c	ENSGT00940000161071	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeriformes_d	ANCESTRAL SPECIES	42	ENSGT00940000155114	ENSGT00940000158465	ENSGT00940000153664.A.a	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Passeriformes_g	ANCESTRAL SPECIES	51	ENSGT00940000155114	ENSGT00940000158465	ENSGT00940000153664.A.a	ENSGT00390000001520	ENSGT00940000160105	ENSGT00940000159295	ENSGT00940000159264	ENSGT00940000159144.C	ENSGT00940000153993.A	ENSGT00940000160860	ENSGT00990000212021	ENSGT00940000170871	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Medium ground finch	MODERN SPECIES	573																MCM7 (ENSGFOG00000011891) ##22
Passeroidea	ANCESTRAL SPECIES	62												ENSGT00950000182923.B.b	ENSGT00950000182972.a.b	ENSGT00940000159929	ENSGT00960000191033	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00940000157637.b	ENSGT00390000014721	ENSGT00390000009664	ENSGT00940000160688	ENSGT00390000004049	ENSGT00940000159866	ENSGT00940000160289	ENSGT00950000183153.c.a	ENSGT01030000234579.A.a.c.b	ENSGT00940000165258	ENSGT00940000161268	ENSGT00930000151033	ENSGT00390000010169	ENSGT00940000160323.b
Zebra finch	DUPLICATION
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	74	ENSTGUG00000025562	ENSTGUG00000023819	ENSTGUG00000023896	ENSTGUG00000024606	NLGN2 (ENSTGUG00000026009)	ENSTGUG00000026637	ENSTGUG00000022981	ENSTGUG00000022020	ENSTGUG00000022070	ENSTGUG00000022231	ENSTGUG00000019432	ENSTGUG00000021052	ENSTGUG00000020495	ENSTGUG00000022471	ENSTGUG00000022718	ENSTGUG00000021991 ##22	ENSTGUG00000029772 ##22	ENSTGUG00000028853	ENSTGUG00000022607	ACHE (ENSTGUG00000022998)	ENSTGUG00000029616	ENSTGUG00000025920	ENSTGUG00000026771	ENSTGUG00000023541	ENSTGUG00000028599	ENSTGUG00000028457	ENSTGUG00000020666	ENSTGUG00000020452	ENSTGUG00000020912	ATP1B2 (ENSTGUG00000020126)	ENSTGUG00000027904
Zebra finch	MODERN SPECIES	74	ENSTGUG00000023837	NAA38 (ENSTGUG00000027601)	ENSTGUG00000027621	ENSTGUG00000024850	ENSTGUG00000019409	ENSTGUG00000019245	PELP1 (ENSTGUG00000023283)	ENSTGUG00000024991	ENSTGUG00000023932	ENSTGUG00000022683	ENSTGUG00000020530	ENSTGUG00000023599	ENSTGUG00000022897	ENSTGUG00000027901	ENSTGUG00000022071	ENSTGUG00000028716 ##22	ENSTGUG00000023096 ##22	ENSTGUG00000022170	ENSTGUG00000023333	ENSTGUG00000025314	ENSTGUG00000021848	ENSTGUG00000022264	ENSTGUG00000020454	ENSTGUG00000026999	ENSTGUG00000023614	ENSTGUG00000028635	ENSTGUG00000023665	ENSTGUG00000027282	ENSTGUG00000021112	ENSTGUG00000026967	ENSTGUG00000025657
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	74	NAA38 (ENSTGUG00000027601)	ENSTGUG00000027621	ENSTGUG00000024850	ENSTGUG00000019409	ENSTGUG00000019245	PELP1 (ENSTGUG00000023283)	ENSTGUG00000024991	ENSTGUG00000023932	ENSTGUG00000022683	ENSTGUG00000020530	ENSTGUG00000023599	ENSTGUG00000022897	ENSTGUG00000027901	ENSTGUG00000022071	ENSTGUG00000028716 ##22	ENSTGUG00000023096 ##22	ENSTGUG00000022170	ENSTGUG00000023333	ENSTGUG00000025314	ENSTGUG00000021848	ENSTGUG00000022264	ENSTGUG00000020454	ENSTGUG00000026999	ENSTGUG00000023614	ENSTGUG00000028635	ENSTGUG00000023665	ENSTGUG00000027282	ENSTGUG00000021112	ENSTGUG00000026967	ENSTGUG00000025657	ENSTGUG00000027781
Zebra finch	MODERN SPECIES	74	ENSTGUG00000023819	ENSTGUG00000023896	ENSTGUG00000024606	NLGN2 (ENSTGUG00000026009)	ENSTGUG00000026637	ENSTGUG00000022981	ENSTGUG00000022020	ENSTGUG00000022070	ENSTGUG00000022231	ENSTGUG00000019432	ENSTGUG00000021052	ENSTGUG00000020495	ENSTGUG00000022471	ENSTGUG00000022718	ENSTGUG00000021991 ##22	ENSTGUG00000029772 ##22	ENSTGUG00000028853	ENSTGUG00000022607	ACHE (ENSTGUG00000022998)	ENSTGUG00000029616	ENSTGUG00000025920	ENSTGUG00000026771	ENSTGUG00000023541	ENSTGUG00000028599	ENSTGUG00000028457	ENSTGUG00000020666	ENSTGUG00000020452	ENSTGUG00000020912	ATP1B2 (ENSTGUG00000020126)	ENSTGUG00000027904	ENSTGUG00000020938
Actinopterygii	ANCESTRAL SPECIES	157												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00390000005067	ENSGT00950000183073.a.a.b	ENSGT01100000263537.b.a.a.a.a.a	ENSGT01040000240444.A.a.b	ENSGT00940000164578.a.b	ENSGT00940000164245	ENSGT00940000160621	ENSGT00970000193372.a.b	ENSGT00910000144784	ENSGT00390000016398.b	ENSGT00390000016398.a	ENSGT00940000165408	ENSGT00940000154419	ENSGT00940000157637.b	ENSGT00840000132239
Reedfish	MODERN SPECIES	11	ENSECRG00000013103	ormdl2 (ENSECRG00000013089)	ENSECRG00000013069	nemp1 (ENSECRG00000013044)	nab2 (ENSECRG00000013032)	CD63 (ENSECRG00000013010)	rdh5 (ENSECRG00000012933)	bloc1s1 (ENSECRG00000012894)	ITGA7 (ENSECRG00000012654)	ENSECRG00000012539	ENSECRG00000012500	ENSECRG00000012472	GPC2 (ENSECRG00000012451)	ENSECRG00000009765	ap4m1 (ENSECRG00000009314)	mcm7 (ENSECRG00000009277) ##22	and3 (ENSECRG00000009265)	COPS6 (ENSECRG00000009236)	ENSECRG00000009217	ENSECRG00000009207	her8a (ENSECRG00000009204)	zgc:77439 (ENSECRG00000009197)	serpine1 (ENSECRG00000009181)	ap1s1 (ENSECRG00000009166)	ENSECRG00000009161	NAT16 (ENSECRG00000009155)	ENSECRG00000009152	ENSECRG00000009147	ache (ENSECRG00000009134)	ENSECRG00000009118	ENSECRG00000009112
Neopterygii	ANCESTRAL SPECIES	66												ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT00940000159929	ENSGT01050000244824.C ##22	ENSGT00390000005067	ENSGT00950000183073.a.a.b	ENSGT00950000182866.D.d.b	ENSGT00390000014827	ENSGT00940000158980	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000159264	ENSGT00940000162334	ENSGT00390000017455	ENSGT00940000166804	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a	ENSGT00940000160414	ENSGT00940000157623
Osteoglossocephalai	ANCESTRAL SPECIES	381														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000009664.b	ENSGT00940000159929	ENSGT00390000005067	ENSGT00950000183073.a.a.b
Osteoglossiformes	ANCESTRAL SPECIES	151														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT00390000014827	ENSGT00940000158980	ENSGT00940000158370	ENSGT00940000159217	ENSGT00940000159264.f	ENSGT00940000162334	ENSGT00940000166804	ENSGT00940000176904	ENSGT01030000234590.B.a.b	ENSGT00940000163776.a	ENSGT00940000160414.c	ENSGT00940000157623
P. kingsleyae	MODERN SPECIES	706													ENSPKIG00000002576	gpc2 (ENSPKIG00000002592)	STAG3 (ENSPKIG00000002614)	mcm7 (ENSPKIG00000002659) ##22	and3 (ENSPKIG00000002692)	ENSPKIG00000002701
Asian bonytongue	MODERN SPECIES	4	ENSSFOG00015001888	ENSSFOG00015001801	ENSSFOG00015001757	rnasel2 (ENSSFOG00015001739)	ENSSFOG00015030221	ENSSFOG00015001605	ENSSFOG00015001581	ENSSFOG00015000245	ENSSFOG00015024306	ENSSFOG00015000306	ENSSFOG00015000367	ENSSFOG00015000429	ENSSFOG00015000558	gpc2 (ENSSFOG00015000591)	ENSSFOG00015000645	MCM7 (ENSSFOG00015000141) ##22	ENSSFOG00015000081	ENSSFOG00015000072	ENSSFOG00015024481	TMEM107 (ENSSFOG00015000069)	aurkb (ENSSFOG00015018843)	VAMP2 (ENSSFOG00015018818)	per1b (ENSSFOG00015018769)	pcolceb (ENSSFOG00015018752)	PAQR9 (ENSSFOG00015018744)	ENSSFOG00015018698	tm4sf5 (ENSSFOG00015018670)	tmem88b (ENSSFOG00015018662)	ENSSFOG00015029204	ENSSFOG00015030855	KDM6B (ENSSFOG00015015793)
Clupeocephala	ANCESTRAL SPECIES	186									ENSGT00940000162676.a.b	ENSGT01030000234530.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT00390000014827	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00390000009416
Otomorpha	ANCESTRAL SPECIES	211										ENSGT01030000234530.a.e.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.f.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00390000009416	ENSGT00940000159192
Clupeiformes	ANCESTRAL SPECIES	37												ENSGT00390000002866.b	ENSGT00510000052596.a	ENSGT00940000153662.A.e	ENSGT00950000182881.a.b.a.b.z.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b.cb	ENSGT00390000014827.b	ENSGT00940000158980	ENSGT00390000006394	ENSGT00940000160322	ENSGT00940000158578	ENSGT00940000160246.c.b	ENSGT00940000163364	ENSGT00940000156665.a	ENSGT00940000154194.c.a	ENSGT00940000164379.e.a	ENSGT00730000111223
Atlantic herring	MODERN SPECIES	22	pkma (ENSCHAG00000002204)	dhdh.2 (ENSCHAG00000004887)	dhdh.1 (ENSCHAG00000004909)	ENSCHAG00000005035	ENSCHAG00000005137	ENSCHAG00000005167	HCN4 (ENSCHAG00000005183)	nptnb (ENSCHAG00000005212)	ENSCHAG00000005247	ENSCHAG00000005253	ENSCHAG00000005257	ENSCHAG00000005496	chrna5 (ENSCHAG00000005516)	prpf19 (ENSCHAG00000005687)	tcirg1b (ENSCHAG00000007301)	mcm7 (ENSCHAG00000008378) ##22	ENSCHAG00000008697	COPS6 (ENSCHAG00000008707)	ENSCHAG00000008812	TMEM107 (ENSCHAG00000008821)	aurkb (ENSCHAG00000008856)	mrpl18 (ENSCHAG00000008868)	ENSCHAG00000008882	grhpra (ENSCHAG00000008900)	ENSCHAG00000008972	ENSCHAG00000008978	tomm5 (ENSCHAG00000009006)	LINGO2 (ENSCHAG00000009029)	eif4ea (ENSCHAG00000009050)	adh5 (ENSCHAG00000009159)	gar1 (ENSCHAG00000009545)
Denticle herring	MODERN SPECIES	9	ENSDCDG00000025781	ATP10B (ENSDCDG00000025857)	gabrb2a (ENSDCDG00000025943)	gabra6a (ENSDCDG00000025980)	nudcd2 (ENSDCDG00000025985)	ccng1 (ENSDCDG00000025989)	septin8b (ENSDCDG00000026013)	sfxn1 (ENSDCDG00000027201)	ppp2caa (ENSDCDG00000027230)	si:ch1073-44g3.1 (ENSDCDG00000027232)	ENSDCDG00000027252	rnf20 (ENSDCDG00000028950)	ENSDCDG00000029831	prpf19 (ENSDCDG00000029834)	tcirg1b (ENSDCDG00000029916)	mcm7 (ENSDCDG00000030464) ##22	ENSDCDG00000031128	COPS6 (ENSDCDG00000031129)	ENSDCDG00000005646	ENSDCDG00000005651	mrpl18 (ENSDCDG00000005660)	ENSDCDG00000005729	grhpra (ENSDCDG00000006140)	ENSDCDG00000006177	ENSDCDG00000006206	LINGO2 (ENSDCDG00000006364)	eif4ea (ENSDCDG00000006410)	adh5 (ENSDCDG00000006501)	gar1 (ENSDCDG00000006836)	adh5l (ENSDCDG00000006915)	pitx2 (ENSDCDG00000006978)
Otophysi	ANCESTRAL SPECIES	147														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT01030000234527.A.a.b.b.b.f	ENSGT00940000154127.B	ENSGT00940000154127.A	ENSGT00940000160490	ENSGT00390000016221	ENSGT00940000164716.C.d	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350
Characiphysae	ANCESTRAL SPECIES	108														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT01030000234527.A.a.b.b.b.f	ENSGT00940000154127.B	ENSGT00940000154127.A	ENSGT00940000160490	ENSGT00390000016221	ENSGT00940000164716.C.d	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350
Characiphysae_b	ANCESTRAL SPECIES	155														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT01030000234527.A.a.b.b.b.f	ENSGT00940000154127.B	ENSGT00940000154127.A	ENSGT00940000160490	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350	ENSGT00940000157037.a.c.a
Electric eel	MODERN SPECIES	81	CHPF (ENSEEEG00000019725)	asic4b (ENSEEEG00000019728)	gmppab (ENSEEEG00000019738)	MYLK (ENSEEEG00000019756)	ENSEEEG00000019759	arl6ip6 (ENSEEEG00000019762)	rprmb (ENSEEEG00000019763)	KCNJ3 (ENSEEEG00000019764)	ino80db (ENSEEEG00000019765)	ndufs1 (ENSEEEG00000019771)	eef1b2 (ENSEEEG00000019878)	ADAM23 (ENSEEEG00000019885)	dytn (ENSEEEG00000019887)	casp20 (ENSEEEG00000019888)	casp8 (ENSEEEG00000019890)	mcm7 (ENSEEEG00000019897) ##22	ENSEEEG00000019948	COPS6 (ENSEEEG00000019949)	CRMP1 (ENSEEEG00000019964)	CYTL1 (ENSEEEG00000020158)	msx1a (ENSEEEG00000020159)	stx18 (ENSEEEG00000020160)	NSG1 (ENSEEEG00000020164)
Characoidei	ANCESTRAL SPECIES	175														ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT01030000234527.A.a.b.b.b.f	ENSGT00940000154127.B	ENSGT00940000154127.A	ENSGT00940000160490	ENSGT00940000161623	ENSGT00390000014853	ENSGT00390000000483.b	ENSGT00940000158750	ENSGT00390000003477	ENSGT00390000012901	ENSGT00940000159350	ENSGT00940000155857.e
Mexicana tetra	MODERN SPECIES	11													gpc2 (ENSAMXG00000039687)	ENSAMXG00000038132	ENSAMXG00000009739	mcm7 (ENSAMXG00000009710) ##22	ENSAMXG00000030462	ENSAMXG00000040970	COPS6 (ENSAMXG00000032673)	CRMP1 (ENSAMXG00000034986)	ENSAMXG00000031239	STK32B (ENSAMXG00000008518)	MSX1 (ENSAMXG00000038753)	stx18 (ENSAMXG00000008474)	NSG1 (ENSAMXG00000008457)	zbtb49 (ENSAMXG00000008432)	lyar (ENSAMXG00000036727)	TMEM128 (ENSAMXG00000035276)	OTOP1 (ENSAMXG00000008376)	ENSAMXG00000043476	SLC2A9 (ENSAMXG00000037535)
Red-bellied piranha	MODERN SPECIES	110		trap1 (ENSPNAG00000011981)	vasnb (ENSPNAG00000002050)	coro7 (ENSPNAG00000012035)	dnaja3a (ENSPNAG00000012046)	HMOX2 (ENSPNAG00000012049)	CFAP70 (ENSPNAG00000002087)	ENSPNAG00000012084	ccnf (ENSPNAG00000012105)	ABCA3 (ENSPNAG00000002129)	ST6GALNAC2 (ENSPNAG00000012198)	CASKIN2 (ENSPNAG00000012310)	NHERF1 (ENSPNAG00000012327)	gpc2 (ENSPNAG00000012356)	ENSPNAG00000012388	mcm7 (ENSPNAG00000002250) ##22	ENSPNAG00000012457	COPS6 (ENSPNAG00000002267)	CRMP1 (ENSPNAG00000012545)	ENSPNAG00000002296	ENSPNAG00000012587	STK32B (ENSPNAG00000002329)	CYTL1 (ENSPNAG00000012628)	msx1a (ENSPNAG00000002342)	stx18 (ENSPNAG00000002363)	NSG1 (ENSPNAG00000012715)	zbtb49 (ENSPNAG00000002376)	lyar (ENSPNAG00000012758)	ENSPNAG00000002396	TMEM128 (ENSPNAG00000012806)	OTOP1 (ENSPNAG00000012870)
Channel catfish	MODERN SPECIES	11	ENSIPUG00000000627	ENSIPUG00000000612	ENSIPUG00000000601	tsen54 (ENSIPUG00000000590)	MYADML2 (ENSIPUG00000000586)	CA10 (ENSIPUG00000000565)	ENSIPUG00000000549	cdk5r1a (ENSIPUG00000000540)	NSF (ENSIPUG00000000474)	stx18 (ENSIPUG00000000463)	msx1a (ENSIPUG00000000460)	cytl1 (ENSIPUG00000000458)	stk32b (ENSIPUG00000000449)	gpc2 (ENSIPUG00000000445)	stag3 (ENSIPUG00000000431)	mcm7 (ENSIPUG00000000421) ##22	ENSIPUG00000000419	cops6 (ENSIPUG00000000413)	evc (ENSIPUG00000000408)	ENSIPUG00000000402	OTOP1 (ENSIPUG00000000394)	TMEM128 (ENSIPUG00000000391)	lyar (ENSIPUG00000000389)	zbtb49 (ENSIPUG00000000380)	ENSIPUG00000000377	SLC2A9 (ENSIPUG00000000360)	wdr1 (ENSIPUG00000000350)	ENSIPUG00000000345	ENSIPUG00000000341	HS3ST1 (ENSIPUG00000000339)	rab28 (ENSIPUG00000000328)
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT01050000244824.C.c ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT01050000244824.C.c ##22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	5	ENSCARG00000011665	HS3ST1 (ENSCARG00000011683)	ENSCARG00000011689	ENSCARG00000011711	WDR1 (ENSCARG00000011730)	DRD5 (ENSCARG00000011811)	ENSCARG00000011815	ENSCARG00000011826	HS3ST1 (ENSCARG00000011830)	zbtb49 (ENSCARG00000011835)	lyar (ENSCARG00000011845)	smtla (ENSCARG00000011854)	COPS6 (ENSCARG00000011864)	ENSCARG00000011906	ENSCARG00000011914	MCM7 (ENSCARG00000011956) ##22	ENSCARG00000012134	fgf2 (ENSCARG00000012144)	nudt6 (ENSCARG00000012158)	spry1 (ENSCARG00000012162)	ENSCARG00000012169	ENSCARG00000012177	ENSCARG00000012189	ENSCARG00000012195
Goldfish	MODERN SPECIES	271																MCM7 (ENSCARG00000065530) ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT01050000244824.C.c ##22
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1899														ENSSGRG00000002068	ENSSGRG00000002070	MCM7 (ENSSGRG00000002086) ##22	gpc2 (ENSSGRG00000002299)
Golden-line barbel	MODERN SPECIES	1171								OTOP1 (ENSSGRG00000034245)	lyar (ENSSGRG00000034246)	zbtb49 (ENSSGRG00000034247)	msx1a (ENSSGRG00000034249)	CYTL1 (ENSSGRG00000034250)	STK32B (ENSSGRG00000034251)	COPS6 (ENSSGRG00000034255)	ENSSGRG00000034268	MCM7 (ENSSGRG00000034271) ##22
Golden-line barbel	MODERN SPECIES	3171																MCM7 (ENSSGRG00000004815) ##22
Cyprinoidei	ANCESTRAL SPECIES	349															ENSGT00950000182972.a.b	ENSGT01050000244824.C.d ##22	ENSGT01050000244897.a.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	971												ENSGT00940000154127.B	ENSGT00950000183073.a.a.b	ENSGT00390000005067.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C.d.a ##22
Goldfish	MODERN SPECIES	1194													COPS6 (ENSCARG00000055317)	ENSCARG00000055367	ENSCARG00000055378	mcm7 (ENSCARG00000055455) ##22	gpc2 (ENSCARG00000055676)
Cyprininae_a	ANCESTRAL SPECIES	351	ENSGT00390000009416	ENSGT00940000159192	ENSGT00940000157037.a.c.a.c	ENSGT00940000159350.i.b	ENSGT00390000012901	ENSGT00390000003477	ENSGT00940000158750	ENSGT00390000014853.h	ENSGT00940000164716.C.d.a.a.b	ENSGT00390000016221	ENSGT00940000160490	ENSGT00940000154127.A	ENSGT00950000183073.a.a.b	ENSGT00390000005067.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C.d.a ##22
Common carp reference	MODERN SPECIES	20	ENSCCRG00000064859	ENSCCRG00000066393	SLC2A9 (ENSCCRG00000071999)	DRD5 (ENSCCRG00000006599)	OTOP1 (ENSCCRG00000006593)	TMEM128 (ENSCCRG00000080581)	lyar (ENSCCRG00000019012)	stx18 (ENSCCRG00000014337)	msx1a (ENSCCRG00000014333)	CYTL1 (ENSCCRG00000059801)	ENSCCRG00000065351	ENSCCRG00000060074	ENSCCRG00000030097	ENSCCRG00000066821	ENSCCRG00000076013	mcm7 (ENSCCRG00000012301) ##22	gpc2 (ENSCCRG00000005374)
Cyprininae	ANCESTRAL SPECIES	1636																ENSGT01050000244824.C.d.b ##22	ENSGT01050000244897.a.a.a
Goldfish	MODERN SPECIES	32	ENSCARG00000064178	ENOX2 (ENSCARG00000064237)	ENSCARG00000064563	ENSCARG00000064599	gm2a (ENSCARG00000064607)	ENSCARG00000064616	pde6a (ENSCARG00000006184)	tmem216 (ENSCARG00000007351)	stx18 (ENSCARG00000007360)	msx1a (ENSCARG00000007403)	ENSCARG00000007408	ENSCARG00000007424	COPS6 (ENSCARG00000007455)	ENSCARG00000007485	ENSCARG00000007489	mcm7 (ENSCARG00000007516) ##22	gpc2 (ENSCARG00000007602)	slc43a1a (ENSCARG00000007627)	ENSCARG00000007637	ssrp1a (ENSCARG00000007651)	ENSCARG00000007755	KLB (ENSCARG00000007768)	MFAP4 (ENSCARG00000007772)	ube2ka (ENSCARG00000007778)	ENSCARG00000007792	ENSCARG00000007860	ENSCARG00000007867	ENSCARG00000007871	ENSCARG00000007877	ENSCARG00000007883	fgf2 (ENSCARG00000007908)
Cyprininae_a	ANCESTRAL SPECIES	1287																ENSGT01050000244824.C.d.b ##22	ENSGT01050000244897.a.a.a
Common carp reference	MODERN SPECIES	35	ENSCCRG00000054319	ENSCCRG00000052713	HS3ST1 (ENSCCRG00000018408)	ENSCCRG00000080674	ENSCCRG00000007156	ENSCCRG00000054538	OTOP1 (ENSCCRG00000061621)	lyar (ENSCCRG00000023061)	zbtb49 (ENSCCRG00000023067)	stx18 (ENSCCRG00000056636)	msx1a (ENSCCRG00000014316)	CYTL1 (ENSCCRG00000069130)	STK32B (ENSCCRG00000014300)	ENSCCRG00000060287	ENSCCRG00000073672	ENSCCRG00000070993 ##22	ENSCCRG00000005398
Zebrafish	MODERN SPECIES	5							CYTL1 (ENSDARG00000110744)	msx1a (ENSDARG00000116118)	stx18 (ENSDARG00000035763)	zbtb49 (ENSDARG00000102111)	lyar (ENSDARG00000098507)	TMEM128 (ENSDARG00000110269)	OTOP1 (ENSDARG00000021566)	ENSDARG00000117001	ENSDARG00000104388	mcm7 (ENSDARG00000101180) ##22	gpc2 (ENSDARG00000104217)	ENSDARG00000091321	WDR1 (ENSDARG00000114022)	nkx3-2 (ENSDARG00000037639)	ENSDARG00000089505	aurkb (ENSDARG00000037640)	tmem107 (ENSDARG00000059150)	FAT4 (ENSDARG00000105285)	ANKRD50 (ENSDARG00000045666)	ankrd50 (ENSDARG00000079065)	spry1 (ENSDARG00000103985)	ENSDARG00000104869	nudt6 (ENSDARG00000103523)	fgf2 (ENSDARG00000104348)	ENSDARG00000104789
Euteleosteomorpha	ANCESTRAL SPECIES	9										ENSGT01030000234530.b.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT01060000248608.b	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986
Protacanthopterygii	ANCESTRAL SPECIES	71										ENSGT00940000155521.a.a	ENSGT00940000157645.f	ENSGT01030000234530.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00950000182866.D.d.b	ENSGT01060000248608.b	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Northern pike	MODERN SPECIES	3				ENSELUG00000027528	PCDH1 (ENSELUG00000021653)	ENSELUG00000021977	ENSELUG00000031779	ENSELUG00000012920	ENSELUG00000033855	ENSELUG00000027222	ENSELUG00000030826	ENSELUG00000034507	ENSELUG00000033077	gpc2 (ENSELUG00000024517)	STAG3 (ENSELUG00000027905)	mcm7 (ENSELUG00000024588) ##22	ENSELUG00000001643	COPS6 (ENSELUG00000001644)	ENSELUG00000001645	ENSELUG00000034579	ENSELUG00000026093	nkx3-2 (ENSELUG00000018758)	ENSELUG00000028762	HS3ST1 (ENSELUG00000033906)	ENSELUG00000031250	gsr (ENSELUG00000018639)	ENSELUG00000018596	slc30a9 (ENSELUG00000009145)	GRXCR1 (ENSELUG00000027758)	ENSELUG00000025875	atp8a1 (ENSELUG00000010166)
Salmoninae	ANCESTRAL SPECIES	355						ENSGT00940000155521.a.a	ENSGT00940000157645.f.a	ENSGT01030000234530.a.a.a.b.b.a	ENSGT01030000234530.a.b.a.a.b	ENSGT00940000157645.f.b	ENSGT01030000234530.a.a.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT00950000182972.a.b.a	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000156198.c.a	ENSGT00530000067117.a	ENSGT00940000161843	ENSGT00940000161833.b.a	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346.f
Huchen	MODERN SPECIES	5222															ENSHHUG00000024576	mcm7 (ENSHHUG00000024597) ##22	ENSHHUG00000024732	ENSHHUG00000024739	ENSHHUG00000024828
Salmoninae_a	ANCESTRAL SPECIES	18	ENSGT00940000157645.f.a	ENSGT01030000234530.a.a.a.b.b.a	ENSGT01030000234530.a.b.a.a.b	ENSGT00940000157645.f.b	ENSGT01030000234530.a.a.a.a.a.b	ENSGT01030000234530.a.a.a.a.b	ENSGT01030000234530.a.b.b.a	ENSGT01030000234530.a.b.a.b.a	ENSGT01030000234530.a.b.a.a.a.a	ENSGT01030000234530.a.a.a.b.a	ENSGT01010000225053	ENSGT01030000234530.a.a.a.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00950000183073.a.a.b.f.a	ENSGT00390000003354.e	ENSGT00940000161843	ENSGT00940000161833.b.a	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a
Salmo	ANCESTRAL SPECIES	24	ENSGT01030000234530.a.b.a.a.b	ENSGT00940000157645.f.b	ENSGT01030000234530.a.a.a.a.a.b	ENSGT01030000234530.a.a.a.a.b.a	ENSGT01030000234530.a.b.b.a	ENSGT01030000234530.a.b.b.b	ENSGT01030000234530.a.a.a.a.b.b	ENSGT01030000234530.a.b.a.b.a.a	ENSGT01030000234530.a.b.a.b.a.b	ENSGT00950000182866.D.d.b.`b.a	ENSGT01030000234530.a.b.a.b.b	ENSGT01030000234530.a.b.a.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00950000182866.D.d.b.`b.b	ENSGT00530000067117.a	ENSGT00940000161843	ENSGT00940000161833.b.a	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346.f	ENSGT00940000159219.b.d	ENSGT00940000157110.y.a	ENSGT00940000161360.a.a
River trout	MODERN SPECIES	22	ENSSTUG00000002354	ENSSTUG00000002360	ENSSTUG00000002369	nitr13 (ENSSTUG00000002421)	ENSSTUG00000002435	nitr13 (ENSSTUG00000002440)	ENSSTUG00000002463	ENSSTUG00000002476	ENSSTUG00000002491	ENSSTUG00000002510	ENSSTUG00000002568	ENSSTUG00000002580	ENSSTUG00000002632	gpc2 (ENSSTUG00000002698)	ENSSTUG00000002988	mcm7 (ENSSTUG00000003025) ##22	ENSSTUG00000003349	COPS6 (ENSSTUG00000003356)	ENSSTUG00000003393	ENSSTUG00000003397	ENSSTUG00000003405	nkx3-2 (ENSSTUG00000003434)	RAB28 (ENSSTUG00000003454)	HS3ST1 (ENSSTUG00000003474)	ENSSTUG00000003491	ENSSTUG00000003507	gsr (ENSSTUG00000003572)	slc30a9 (ENSSTUG00000004494)	GRXCR1 (ENSSTUG00000004619)	ATP8A1 (ENSSTUG00000004799)	shisa3 (ENSSTUG00000010106)
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000002508	ENSSSAG00000002523	ENSSSAG00000092852	ENSSSAG00000002578	ENSSSAG00000002590	ENSSSAG00000002765	ENSSSAG00000092040	ENSSSAG00000002600	ENSSSAG00000002609	ENSSSAG00000010613	ENSSSAG00000002617	ENSSSAG00000083945	ENSSSAG00000002635	ENSSSAG00000002657	ENSSSAG00000003171	ENSSSAG00000005407 ##22	ENSSSAG00000005511	ENSSSAG00000005735	ENSSSAG00000005741	ENSSSAG00000104763	NKX3-2 (ENSSSAG00000091968)	rab28 (ENSSSAG00000005777)	HS3ST1 (ENSSSAG00000109723)	ENSSSAG00000005824	ENSSSAG00000005838	ENSSSAG00000117028	slc30a9 (ENSSSAG00000005870)	GRXCR1 (ENSSSAG00000006661)	atp8a1 (ENSSSAG00000006882)	shisa3 (ENSSSAG00000098743)	BEND4 (ENSSSAG00000092370)
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	45	ENSGT00940000157357.e.b	ENSGT00940000154108.a.c.b	ENSGT00940000154445.b	ENSGT00940000153169.B.m.b	ENSGT00940000165110.b.c.b.b	ENSGT00390000008582.e	ENSGT00530000063652.a.b.f	ENSGT00530000064262.pc.b.o	ENSGT00940000154615.i.b.f.g	ENSGT00940000155521.a.a	ENSGT01030000234530.a.a.a.a.a.a	ENSGT00940000155353.b	ENSGT00940000157645.f.a	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C.e ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f
Rainbow trout	MODERN SPECIES	5	ENSOMYG00000036676	ENSOMYG00000036669	ENSOMYG00000036637	ENSOMYG00000036666	sirpb2 (ENSOMYG00000036661)	ENSOMYG00000036645	ENSOMYG00000036630	ENSOMYG00000058518	ENSOMYG00000077548	ENSOMYG00000051413	ENSOMYG00000036606	ENSOMYG00000036495	ENSOMYG00000049577	ENSOMYG00000036405	ENSOMYG00000036382	ENSOMYG00000035735 ##22	ENSOMYG00000035638	csn6 (ENSOMYG00000035631)	ENSOMYG00000035619	ENSOMYG00000035613	ENSOMYG00000066660	ENSOMYG00000035603	NKX3-2 (ENSOMYG00000061493)	RAB28 (ENSOMYG00000061686)	ENSOMYG00000063521	ENSOMYG00000063323	HS3ST1 (ENSOMYG00000035552)	ENSOMYG00000035529	ENSOMYG00000034247	slc30a9 (ENSOMYG00000034064)	GRXCR1 (ENSOMYG00000033999)
Oncorhynchus_a	ANCESTRAL SPECIES	46	ENSGT00940000154445.b	ENSGT00940000153169.B.m.b	ENSGT00940000165110.b.c.b.b	ENSGT00940000165110.b.c.b.a.a	ENSGT00390000008582.e	ENSGT00530000063652.a.b.f	ENSGT00530000064262.pc.b.o	ENSGT00940000154615.i.b.f.g	ENSGT00940000160234.a.a.b.a	ENSGT00940000155412.a.a.a.a.d	ENSGT00940000155521.a.a	ENSGT01030000234530.a.a.a.a.a.a	ENSGT00940000157645.f.a	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b.b	ENSGT01050000244824.C.e ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b.f.b	ENSGT00390000003354.f	ENSGT00530000064449.A.a.i.f.b	ENSGT00950000182866.D.d.b.`b.a
Coho salmon	MODERN SPECIES	10	MFAP4 (ENSOKIG00005011371)	ENSOKIG00005011367	PCDH1 (ENSOKIG00005011344)	ENSOKIG00005011329	ENSOKIG00005011310	ENSOKIG00005011274	nitr13 (ENSOKIG00005011266)	ENSOKIG00005011253	ENSOKIG00005011244	ENSOKIG00005011238	ENSOKIG00005011227	ENSOKIG00005011219	ENSOKIG00005011205	rnasel3 (ENSOKIG00005011201)	gpc2 (ENSOKIG00005010983)	mcm7 (ENSOKIG00005010408) ##22	ENSOKIG00005010364	ENSOKIG00005010357	COPS6 (ENSOKIG00005010343)	ENSOKIG00005010337	ENSOKIG00005010332	ENSOKIG00005010327	ENSOKIG00005010281	ENSOKIG00005010235	nkx3-2 (ENSOKIG00005010222)	RAB28 (ENSOKIG00005010189)	HS3ST1 (ENSOKIG00005010176)	ENSOKIG00005010158	ENSOKIG00005010145	gsr (ENSOKIG00005010012)	slc30a9 (ENSOKIG00005009869)
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	13	ENSOTSG00005008308	ENSOTSG00005008311	ENSOTSG00005008312	ENSOTSG00005008315	rnasel3 (ENSOTSG00005008318)	ENSOTSG00005008319	ENSOTSG00005008325	ENSOTSG00005008337	ENSOTSG00005008341	ENSOTSG00005008344	ENSOTSG00005008347	ENSOTSG00005008357	rnasel3 (ENSOTSG00005008359)	gpc2 (ENSOTSG00005008362)	ENSOTSG00005008377	mcm7 (ENSOTSG00005008384) ##22	ENSOTSG00005009394	COPS6 (ENSOTSG00005009396)	ENSOTSG00005009398	ENSOTSG00005009399	ENSOTSG00005009400	ENSOTSG00005009402	nkx3-2 (ENSOTSG00005009404)	drp2 (ENSOTSG00005009406)	ENSOTSG00005009410	slc9a6a (ENSOTSG00005009419)	fhl1a (ENSOTSG00005009883)	MAP7D3 (ENSOTSG00005009885)	ENSOTSG00005009886	si:dkeyp-11e3.1 (ENSOTSG00005009887)	tmtops3a (ENSOTSG00005009888)
Chinook salmon	MODERN SPECIES	13	WNT8A (ENSOTSG00005034262)	PCDH1 (ENSOTSG00005034257)	ENSOTSG00005034255	rnasel3 (ENSOTSG00005034254)	ENSOTSG00005034250	ENSOTSG00005034240	ENSOTSG00005034234	ENSOTSG00005034228	ENSOTSG00005034225	ENSOTSG00005034223	ENSOTSG00005034221	ENSOTSG00005034219	rnasel3 (ENSOTSG00005034217)	gpc2 (ENSOTSG00005034170)	ENSOTSG00005034167	mcm7 (ENSOTSG00005033622) ##22	ENSOTSG00005033614	COPS6 (ENSOTSG00005033613)	ENSOTSG00005033611	ENSOTSG00005033610	ENSOTSG00005033607	nkx3-2 (ENSOTSG00005033605)	noto (ENSOTSG00005033604)	emx1 (ENSOTSG00005033603)	slc30a9 (ENSOTSG00005033585)	GRXCR1 (ENSOTSG00005033583)	atp8a1 (ENSOTSG00005031508)	shisa3 (ENSOTSG00005031504)	BEND4 (ENSOTSG00005031503)	ENSOTSG00005031502	sfxn5b (ENSOTSG00005031501)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01050000244824.C.f ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01050000244824.C.f ##22
Coho salmon	MODERN SPECIES	3	fosab (ENSOKIG00005009637)	ENSOKIG00005009647	jdp2b (ENSOKIG00005009659)	batf (ENSOKIG00005009686)	FLVCR2 (ENSOKIG00005009731)	TGFB3 (ENSOKIG00005010041)	ESRRB (ENSOKIG00005010119)	YLPM1 (ENSOKIG00005026354)	ENSOKIG00005026377	DLST (ENSOKIG00005026388)	VSX2 (ENSOKIG00005026433)	HMBOX1 (ENSOKIG00005026443)	KIF13B (ENSOKIG00005026499)	ENSOKIG00005026767	znf395b (ENSOKIG00005026773)	ENSOKIG00005026789 ##22	il17a/f3 (ENSOKIG00005026812) #23	stmn4 (ENSOKIG00005026834)	ENSOKIG00005026850	ENSOKIG00005026855	ENSOKIG00005026864	vrtn (ENSOKIG00005026992)	ENSOKIG00005027002	ENSOKIG00005027015	ENSOKIG00005027030	ENSOKIG00005027043	ENSOKIG00005027055	ENSOKIG00005027066	ENSOKIG00005027075	ENSOKIG00005027081	dll4 (ENSOKIG00005027104)
Acanthomorphata	ANCESTRAL SPECIES	1	ENSGT00390000017284.b	ENSGT00940000153322.B.d.a	ENSGT00940000169511	ENSGT00940000159747	ENSGT00940000157712	ENSGT00940000157425.A	ENSGT00950000183026.A.a.b	ENSGT00390000003288	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Cod	MODERN SPECIES	1	ENSGMOG00000035215	ENSGMOG00000032065	ENSGMOG00000030659	ENSGMOG00000031398	ENSGMOG00000035791	ENSGMOG00000036956	ENSGMOG00000003771	ENSGMOG00000035721	ENSGMOG00000032256	ENSGMOG00000030647	ENSGMOG00000019766	ENSGMOG00000036584	ENSGMOG00000027768	ENSGMOG00000018798	ENSGMOG00000018792	ENSGMOG00000018770 ##22	ENSGMOG00000027575	ENSGMOG00000018754	ENSGMOG00000033146	aurkb (ENSGMOG00000018737)	ENSGMOG00000025527	ENSGMOG00000018730	nkx3-2 (ENSGMOG00000026159)	ENSGMOG00000034110	RAB28 (ENSGMOG00000018715)	HS3ST1 (ENSGMOG00000019948)	ENSGMOG00000036954	ENSGMOG00000031231	ENSGMOG00000015277	ENSGMOG00000027663	cpeb4a (ENSGMOG00000023337)
Euacanthomorphacea	ANCESTRAL SPECIES	10	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a	ENSGT00950000182968.d.b.a	ENSGT01030000234530.a.d	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Pinecone sodierfish	MODERN SPECIES	1	ENSMMDG00005001133	ENSMMDG00005001136	ENSMMDG00005001140	ENSMMDG00005001151	ENSMMDG00005001160	ENSMMDG00005001175	ENSMMDG00005001189	ENSMMDG00005001213	ENSMMDG00005001227	ENSMMDG00005001269	ENSMMDG00005001280	ENSMMDG00005001289	ENSMMDG00005001313	gpc2 (ENSMMDG00005001435)	ENSMMDG00005001983	mcm7 (ENSMMDG00005002053) ##22	ENSMMDG00005003440	COPS6 (ENSMMDG00005003442)	ENSMMDG00005003445	aurkb (ENSMMDG00005003446)	nkx3-2 (ENSMMDG00005003448)	RAB28 (ENSMMDG00005003450)	HS3ST1 (ENSMMDG00005003453)	ENSMMDG00005003455	ENSMMDG00005003456	gsr (ENSMMDG00005003474)	slc30a9 (ENSMMDG00005003625)	GRXCR1 (ENSMMDG00005003635)	atp8a1 (ENSMMDG00005003653)	shisa3 (ENSMMDG00005003682)	BEND4 (ENSMMDG00005003687)
Percomorphaceae	ANCESTRAL SPECIES	11	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.a.a	ENSGT01030000234530.a.d.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a	ENSGT00950000182968.d.b.a.a	ENSGT01030000234530.a.d.e.b.a	ENSGT00950000182968.d.b.a.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Tiger tail seahorse	MODERN SPECIES	175	GANAB (ENSHCOG00000006981)	INTS5 (ENSHCOG00000006997)	rarres3l (ENSHCOG00000007008)	SCYL1 (ENSHCOG00000007021)	rom1b (ENSHCOG00000007032)	ENSHCOG00000007041	ccdc88b (ENSHCOG00000007070)	FLRT1 (ENSHCOG00000000211)	macrod1 (ENSHCOG00000007104)	fermt3b (ENSHCOG00000007141)	trpt1 (ENSHCOG00000000218)	ZBTB3 (ENSHCOG00000000222)	rnaseh2c (ENSHCOG00000007177)	ENSHCOG00000007186	ENSHCOG00000007198	mcm7 (ENSHCOG00000007250) ##22	ENSHCOG00000007267	COPS6 (ENSHCOG00000000865)	ENSHCOG00000007320	aurkb (ENSHCOG00000000240)	ENSHCOG00000000244	ENSHCOG00000007354	nkx3-2 (ENSHCOG00000007369)	RAB28 (ENSHCOG00000007381)	HS3ST1 (ENSHCOG00000007391)	ENSHCOG00000007394	gsr (ENSHCOG00000007400)	slc30a9 (ENSHCOG00000007409)	GRXCR1 (ENSHCOG00000007426)	ENSHCOG00000007435	ATP8A1 (ENSHCOG00000007474)
Percomorphaceae_B	ANCESTRAL SPECIES	14	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Percomorphaceae_C	ANCESTRAL SPECIES	16	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Eupercaria	ANCESTRAL SPECIES	12	ENSGT01030000234530.a.d.e.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000170413.B	ENSGT01030000234530.a.c.b.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Tetraodontidae	ANCESTRAL SPECIES	9	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000167175	ENSGT00940000153147.a.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000162676.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963
Fugu	MODERN SPECIES	5	ENSTRUG00000026725	ENSTRUG00000028475	ENSTRUG00000030501	ENSTRUG00000027453	ENSTRUG00000030017	ENSTRUG00000033022	ENSTRUG00000027161	ENSTRUG00000033390	ENSTRUG00000030499	ENSTRUG00000029980	ENSTRUG00000003304	ENSTRUG00000027943	ENSTRUG00000026871	gpc2 (ENSTRUG00000014813)	ENSTRUG00000014625	mcm7 (ENSTRUG00000014527) ##22	ENSTRUG00000014522	COPS6 (ENSTRUG00000014492)	ENSTRUG00000021019	aurkb (ENSTRUG00000014460)	ENSTRUG00000002738	ENSTRUG00000014438	RAB28 (ENSTRUG00000023129)	ENSTRUG00000026560	HS3ST1 (ENSTRUG00000019771)	ENSTRUG00000027178	gsr (ENSTRUG00000014303)	slc30a9 (ENSTRUG00000014154)	GRXCR1 (ENSTRUG00000014150)	atp8a1 (ENSTRUG00000013851)	shisa3 (ENSTRUG00000019963)
Tetraodon	MODERN SPECIES		KLHL3 (ENSTNIG00000007399)	ENSTNIG00000007398	maea (ENSTNIG00000007397)	zgc:136929 (ENSTNIG00000007396)	spon2b (ENSTNIG00000007395)	ENSTNIG00000007394	ENSTNIG00000007393	ENSTNIG00000007392	ENSTNIG00000006201	slit3 (ENSTNIG00000015721)	ENSTNIG00000015722	ENSTNIG00000015723	ENSTNIG00000001126	ITGA6 (ENSTNIG00000015724)	gpc2 (ENSTNIG00000015725)	mcm7 (ENSTNIG00000015726) ##22	ENSTNIG00000015727	COPS6 (ENSTNIG00000015728)	ENSTNIG00000015729	aurkb (ENSTNIG00000015730)	ENSTNIG00000015731	nkx3-2 (ENSTNIG00000015732)	RAB28 (ENSTNIG00000015733)	HS3ST1 (ENSTNIG00000000767)	gsr (ENSTNIG00000015734)	slc30a9 (ENSTNIG00000015735)	GRXCR1 (ENSTNIG00000015736)	atp8a1 (ENSTNIG00000015737)	BEND4 (ENSTNIG00000015738)	ENSTNIG00000015739	sfxn5b (ENSTNIG00000015740)
Eupecaria_A	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000170413.B.c	ENSGT01030000234530.a.c.b.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Eupecaria_B	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000170413.B.c	ENSGT01030000234530.a.c.b.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Eupecaria_C	ANCESTRAL SPECIES	12	ENSGT00940000157645.e.b	ENSGT00940000157645.e.a.b	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.d.e.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000170413.B.d	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000177190	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843.b	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	14												ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843.b	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Large yellow croaker	MODERN SPECIES		gdf3 (ENSLCRG00005000423)	klf7b (ENSLCRG00005000425)	creb1a (ENSLCRG00005000428)	ccnyl1 (ENSLCRG00005000433)	fzd5 (ENSLCRG00005000439)	ENSLCRG00005000441	ENSLCRG00005000442	ENSLCRG00005000448	ENSLCRG00005000453	ENSLCRG00005000455	ENSLCRG00005000457	ENSLCRG00005000458	ENSLCRG00005000464	gpc2 (ENSLCRG00005000467)	STAG3 (ENSLCRG00005000469)	mcm7 (ENSLCRG00005000473) ##22	ENSLCRG00005000476	COPS6 (ENSLCRG00005000478)	ENSLCRG00005000495	ENSLCRG00005000496	aurkb (ENSLCRG00005000498)	ENSLCRG00005000500	nkx3-2 (ENSLCRG00005000501)	RAB28 (ENSLCRG00005000504)	HS3ST1 (ENSLCRG00005000508)	ENSLCRG00005000511	ENSLCRG00005000513	gsr (ENSLCRG00005000521)	slc30a9 (ENSLCRG00005000743)	GRXCR1 (ENSLCRG00005001364)	atp8a1 (ENSLCRG00005001544)
European seabass	MODERN SPECIES	12	ENSDLAG00005020125	ENSDLAG00005033094	ENSDLAG00005032113	ENSDLAG00005033938	ENSDLAG00005032393	ENSDLAG00005026937	ENSDLAG00005032696	ENSDLAG00005008799	ENSDLAG00005032824	ENSDLAG00005012890	ENSDLAG00005028119	ENSDLAG00005007247	ENSDLAG00005007257	ENSDLAG00005007414	ENSDLAG00005007639	ENSDLAG00005030731 ##22	ENSDLAG00005033009	ENSDLAG00005007695	ENSDLAG00005029672	ENSDLAG00005029287	ENSDLAG00005026855	NKX3-2 (ENSDLAG00005028615)	RAB28 (ENSDLAG00005007730)	HS3ST1 (ENSDLAG00005032596)	ENSDLAG00005007753	ENSDLAG00005007760	ENSDLAG00005007774	slc30a9 (ENSDLAG00005008063)	GRXCR1 (ENSDLAG00005008583)	atp8a1 (ENSDLAG00005008615)	shisa3 (ENSDLAG00005027814)
Gilthead seabream	MODERN SPECIES	9	ENSSAUG00010022974	nitr13 (ENSSAUG00010022972)	ENSSAUG00010022971	ENSSAUG00010022970	ENSSAUG00010022968	ENSSAUG00010022967	ENSSAUG00010022965	ENSSAUG00010022964	ENSSAUG00010022963	ENSSAUG00010022962	ENSSAUG00010022961	ENSSAUG00010022960	ENSSAUG00010022943	gpc2 (ENSSAUG00010022862)	ENSSAUG00010022859	mcm7 (ENSSAUG00010022857) ##22	ENSSAUG00010022853	COPS6 (ENSSAUG00010022836)	ENSSAUG00010022830	ENSSAUG00010022827	ENSSAUG00010022824	nkx3-2 (ENSSAUG00010022822)	RAB28 (ENSSAUG00010022821)	HS3ST1 (ENSSAUG00010022817)	ENSSAUG00010022816	ENSSAUG00010022815	gsr (ENSSAUG00010022782)	slc30a9 (ENSSAUG00010022108)	GRXCR1 (ENSSAUG00010022099)	atp8a1 (ENSSAUG00010017273)	shisa3 (ENSSAUG00010017183)
Perciformes	ANCESTRAL SPECIES	13	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.b	ENSGT00940000157645.e.a.b	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000171832	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Perciformes_a	ANCESTRAL SPECIES	11	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.b	ENSGT00940000157645.e.a.b	ENSGT01030000234530.a.c.b.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT00940000162676.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000171832	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Pike perch	MODERN SPECIES	18	ENSSLUG00000024010	ENSSLUG00000024018	ENSSLUG00000024021	ENSSLUG00000024024	ENSSLUG00000024027	ENSSLUG00000024028	ENSSLUG00000024037	ENSSLUG00000024046	ENSSLUG00000024052	ENSSLUG00000024058	ENSSLUG00000024073	ENSSLUG00000024103	ENSSLUG00000024108	gpc2 (ENSSLUG00000024133)	STAG3 (ENSSLUG00000024162)	mcm7 (ENSSLUG00000024175) ##22	ENSSLUG00000024236	COPS6 (ENSSLUG00000024239)	ENSSLUG00000024249	aurkb (ENSSLUG00000024250)	ENSSLUG00000024255	nkx3-2 (ENSSLUG00000024263)	RAB28 (ENSSLUG00000024264)	ENSSLUG00000024268	HS3ST1 (ENSSLUG00000024272)	ENSSLUG00000024275	ENSSLUG00000024278	gsr (ENSSLUG00000024300)	slc30a9 (ENSSLUG00000024397)	GRXCR1 (ENSSLUG00000005179)	atp8a1 (ENSSLUG00000005603)
Channel bull blenny	MODERN SPECIES	1	ENSCGOG00000010398	ENSCGOG00000010399	ENSCGOG00000010418	ENSCGOG00000010423	ENSCGOG00000010447	ENSCGOG00000010453	ENSCGOG00000010454	ENSCGOG00000010459	ENSCGOG00000010461	ENSCGOG00000010463	ENSCGOG00000010468	ENSCGOG00000010471	ITGA6 (ENSCGOG00000010473)	gpc2 (ENSCGOG00000010481)	ENSCGOG00000010601	mcm7 (ENSCGOG00000010623) ##22	ENSCGOG00000011038	COPS6 (ENSCGOG00000011047)	ENSCGOG00000011321	aurkb (ENSCGOG00000011322)	ENSCGOG00000011323	nkx3-2 (ENSCGOG00000011341)	ENSCGOG00000011344	HS3ST1 (ENSCGOG00000011348)	ENSCGOG00000004078	gsr (ENSCGOG00000004134)	slc30a9 (ENSCGOG00000004655)	GRXCR1 (ENSCGOG00000004778)	atp8a1 (ENSCGOG00000004862)	shisa3 (ENSCGOG00000007593)	ENSCGOG00000007595
Cottioidei	ANCESTRAL SPECIES	9	ENSGT00940000157891	ENSGT00940000154808.a.b.k	ENSGT00940000153147.a.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.a.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000171832	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360
Lumpfish	MODERN SPECIES	1	ENSCLMG00005017952	ENSCLMG00005017949	ENSCLMG00005017948	ENSCLMG00005017946	ENSCLMG00005017943	ENSCLMG00005017941	ENSCLMG00005017939	ENSCLMG00005017938	nitr13 (ENSCLMG00005017936)	ENSCLMG00005017933	ENSCLMG00005017932	ENSCLMG00005017927	gpc2 (ENSCLMG00005017882)	ENSCLMG00005017879	ENSCLMG00005017878	mcm7 (ENSCLMG00005017691) ##22	ENSCLMG00005017687	COPS6 (ENSCLMG00005017553)	ENSCLMG00005017549	aurkb (ENSCLMG00005017547)	ENSCLMG00005017543	nkx3-2 (ENSCLMG00005017542)	RAB28 (ENSCLMG00005017539)	HS3ST1 (ENSCLMG00005017538)	gsr (ENSCLMG00005017530)	slc30a9 (ENSCLMG00005016743)	GRXCR1 (ENSCLMG00005016728)	atp8a1 (ENSCLMG00005011319)	shisa3 (ENSCLMG00005011272)	BEND4 (ENSCLMG00005011270)	ENSCLMG00005011269
Stickleback	MODERN SPECIES	3	ENSGACG00000016449	hnrnpa0b (ENSGACG00000016447)	maea (ENSGACG00000016443)	zgc:136929 (ENSGACG00000016437)	spon2b (ENSGACG00000016431)	ENSGACG00000016428	fgfrl1a (ENSGACG00000016426)	ENSGACG00000016424	ENSGACG00000016423	ENSGACG00000016422	ENSGACG00000016419	slit3 (ENSGACG00000016411)	ENSGACG00000016409	ENSGACG00000016407	gpc2 (ENSGACG00000016402)	mcm7 (ENSGACG00000016398) ##22	COPS6 (ENSGACG00000016388)	ENSGACG00000016387	aurkb (ENSGACG00000016381)	ENSGACG00000016380	nkx3-2 (ENSGACG00000016378)	ENSGACG00000016372	emx3 (ENSGACG00000016370)	b4galt7 (ENSGACG00000016366)	tmed9 (ENSGACG00000016363)	tmem216 (ENSGACG00000016362)	PCDH1 (ENSGACG00000016360)	PCDH12 (ENSGACG00000016358)	gm2a (ENSGACG00000016356)	thoc3 (ENSGACG00000016353)	cplx2 (ENSGACG00000016352)
Percomorphaceae_D	ANCESTRAL SPECIES	17	ENSGT00950000182968.d.b.a.a.b	ENSGT00940000170413.B	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.a.a.b	ENSGT00950000182968.d.b.a.b	ENSGT01030000234530.a.c.b.b.a.a.a.b	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Anabantaria	ANCESTRAL SPECIES	15	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00990000205479	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000171832	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346
Anabantoidei	ANCESTRAL SPECIES	11	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b	ENSGT00940000170413.B	ENSGT01030000234530.a.d.e.b.a.a.b	ENSGT01030000234530.a.c.b.b.a.a.b.q	ENSGT01030000234530.a.d.e.b.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000156835.l.a.b	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Climbing perch	MODERN SPECIES	1	ENSATEG00000002309	ENSATEG00000002292	ENSATEG00000027224	ENSATEG00000002264	ENSATEG00000002253	ENSATEG00000025471	ENSATEG00000002171	ENSATEG00000002212	ENSATEG00000002195	ENSATEG00000025448	ENSATEG00000028861	ENSATEG00000002105	ENSATEG00000002100	ENSATEG00000002057	ENSATEG00000026575	ENSATEG00000001999 ##22	ENSATEG00000001972	ENSATEG00000001917	ENSATEG00000001905	aurkb (ENSATEG00000001897)	ENSATEG00000001816	ENSATEG00000025835	nkx3-2 (ENSATEG00000001782)	ENSATEG00000001753	HS3ST1 (ENSATEG00000001734)	ENSATEG00000001697	ENSATEG00000001687	slc30a9 (ENSATEG00000001679)	GRXCR1 (ENSATEG00000001650)	atp8a1 (ENSATEG00000001432)	shisa3 (ENSATEG00000027092)
Siamese fighting fish	MODERN SPECIES	1	ENSBSLG00000011989	ENSBSLG00000011965	ENSBSLG00000011950	ENSBSLG00000011941	ENSBSLG00000011914	ENSBSLG00000011901	ENSBSLG00000011884	ENSBSLG00000011871	ENSBSLG00000011846	ENSBSLG00000011803	ENSBSLG00000011727	ENSBSLG00000011661	ENSBSLG00000011615	gpc2 (ENSBSLG00000011423)	ENSBSLG00000011404	mcm7 (ENSBSLG00000011105) ##22	ENSBSLG00000011088	COPS6 (ENSBSLG00000011037)	ENSBSLG00000010953	aurkb (ENSBSLG00000010905)	ENSBSLG00000010887	nkx3-2 (ENSBSLG00000010875)	ENSBSLG00000010781	HS3ST1 (ENSBSLG00000010754)	ENSBSLG00000010626	ENSBSLG00000010356	gsr (ENSBSLG00000010224)	slc30a9 (ENSBSLG00000010158)	GRXCR1 (ENSBSLG00000010148)	ATP8A1 (ENSBSLG00000008438)	shisa3 (ENSBSLG00000026235)
Zig-zag eel	MODERN SPECIES	1	ENSMAMG00000026187	ENSMAMG00000025016	ENSMAMG00000024852	ENSMAMG00000018383	ENSMAMG00000027554	ENSMAMG00000028334	ENSMAMG00000026318	ENSMAMG00000025389	ENSMAMG00000028094	ENSMAMG00000018527	ENSMAMG00000025090	ENSMAMG00000026185	ENSMAMG00000018598	ENSMAMG00000018779	ENSMAMG00000018794	ENSMAMG00000018804 ##22	ENSMAMG00000018868	ENSMAMG00000018884	ENSMAMG00000018909	ENSMAMG00000025506	aurkb (ENSMAMG00000026263)	ENSMAMG00000018930	nkx3-2 (ENSMAMG00000018984)	ENSMAMG00000018996	HS3ST1 (ENSMAMG00000025247)	ENSMAMG00000019040	ENSMAMG00000027195	ENSMAMG00000019078	slc30a9 (ENSMAMG00000019086)	GRXCR1 (ENSMAMG00000019110)	atp8a1 (ENSMAMG00000019131)
Carangaria	ANCESTRAL SPECIES	15	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000177190	ENSGT01030000234530.a.c.b.b.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Pleuronectoidei	ANCESTRAL SPECIES	19	ENSGT00940000157891	ENSGT00940000167175	ENSGT00940000153147.a.a	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT01030000234530.a.d.e.a	ENSGT00940000173984	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Turbot	MODERN SPECIES	4	CTBP1 (ENSSMAG00000010328)	spon2b (ENSSMAG00000010439)	ENSSMAG00000010473	ENSSMAG00000029602	fgfrl1a (ENSSMAG00000010509)	ENSSMAG00000010540	ENSSMAG00000010820	ENSSMAG00000010797	ENSSMAG00000024700	ENSSMAG00000010841	ENSSMAG00000023026	ENSSMAG00000010900	ENSSMAG00000010934	ENSSMAG00000010978	ENSSMAG00000025298	MCM7 (ENSSMAG00000011017) ##22	ENSSMAG00000011041	ENSSMAG00000011068	ENSSMAG00000011116	ENSSMAG00000011168	ENSSMAG00000011199	NKX3-2 (ENSSMAG00000011278)	RAB28 (ENSSMAG00000031249)	ENSSMAG00000011334	HS3ST1 (ENSSMAG00000029254)	ENSSMAG00000011355	ENSSMAG00000011360	slc30a9 (ENSSMAG00000011372)	GRXCR1 (ENSSMAG00000011397)	atp8a1 (ENSSMAG00000011459)	shisa3 (ENSSMAG00000011715)
Tongue sole	MODERN SPECIES	6	zgc:136929 (ENSCSEG00000003417)	spon2b (ENSCSEG00000003405)	maea (ENSCSEG00000003393)	ENSCSEG00000003385	ENSCSEG00000003375	fgfrl1a (ENSCSEG00000003362)	ENSCSEG00000003359	slit3 (ENSCSEG00000003303)	ENSCSEG00000003285	ENSCSEG00000003269	ENSCSEG00000003264	ITGA6 (ENSCSEG00000003251)	gpc2 (ENSCSEG00000003250)	ENSCSEG00000003246	ENSCSEG00000003242	mcm7 (ENSCSEG00000003225) ##22	ENSCSEG00000003221	COPS6 (ENSCSEG00000003213)	ENSCSEG00000003206	aurkb (ENSCSEG00000003195)	ENSCSEG00000003193	ENSCSEG00000003190	ENSCSEG00000003174	nkx3-2 (ENSCSEG00000003170)	ENSCSEG00000003156	HS3ST1 (ENSCSEG00000003153)	ENSCSEG00000003147	ENSCSEG00000003145	gsr (ENSCSEG00000003142)	slc30a9 (ENSCSEG00000003137)	GRXCR1 (ENSCSEG00000003132)
Carangaria_A	ANCESTRAL SPECIES	17	ENSGT00950000183033.a.b.b	ENSGT00940000157891	ENSGT00940000167175	ENSGT00940000165646.B	ENSGT00940000154808.a.b.l	ENSGT00940000153203.B	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000171832	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Barramundi perch	MODERN SPECIES	390								slit3 (ENSLCAG00010021484)	ENSLCAG00010021910	ENSLCAG00010021913	ENSLCAG00010021924	ENSLCAG00010021962	ENSLCAG00010021981	ENSLCAG00010021987	ENSLCAG00010021989	mcm7 (ENSLCAG00010022033) ##22	ENSLCAG00010022186	ENSLCAG00010022220	ENSLCAG00010022224	ENSLCAG00010022236	ENSLCAG00010022251	ENSLCAG00010022271	ENSLCAG00010022287	ENSLCAG00010022318	ENSLCAG00010022321	ENSLCAG00010022327	ENSLCAG00010022329	ENSLCAG00010022332	ENSLCAG00010022334	ENSLCAG00010022337	ENSLCAG00010022353
Seriola	ANCESTRAL SPECIES	31	ENSGT01030000234530.a.c.b.b.a.a.a.b	ENSGT01030000234530.a.c.b.b.b	ENSGT01030000234530.a.d.e.b.a.a.b.j	ENSGT00940000162676.a.a.x.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.d.e.b.a.a.b.i	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000162676.a.a.y	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b	ENSGT00940000162676.a.a.x.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963
Yellowtail amberjack	MODERN SPECIES	3289	ENSSLDG00000024558	ENSSLDG00000024549	ENSSLDG00000024543	ENSSLDG00000024534	ENSSLDG00000024484	ENSSLDG00000024474	ENSSLDG00000024442	ENSSLDG00000024426	ENSSLDG00000024417	ENSSLDG00000024400	ENSSLDG00000024384	ENSSLDG00000024372	ENSSLDG00000024358	gpc2 (ENSSLDG00000024350)	ENSSLDG00000024342	mcm7 (ENSSLDG00000024311) ##22	ENSSLDG00000024305	COPS6 (ENSSLDG00000024291)	ENSSLDG00000024212	aurkb (ENSSLDG00000024189)	ENSSLDG00000024171	nkx3-2 (ENSSLDG00000024167)	RAB28 (ENSSLDG00000024149)	HS3ST1 (ENSSLDG00000024142)	ENSSLDG00000024139	gsr (ENSSLDG00000024121)	slc30a9 (ENSSLDG00000024052)	GRXCR1 (ENSSLDG00000024025)	atp8a1 (ENSSLDG00000023826)	shisa3 (ENSSLDG00000023805)	BEND4 (ENSSLDG00000023795)
Greater amberjack	MODERN SPECIES	113	ENSSDUG00000002855	ENSSDUG00000002873	ENSSDUG00000002892	ENSSDUG00000002917	ENSSDUG00000002940	ENSSDUG00000002957	ENSSDUG00000002988	ENSSDUG00000003047	ENSSDUG00000003071	ENSSDUG00000003103	ENSSDUG00000003176	ENSSDUG00000003194	ENSSDUG00000003208	gpc2 (ENSSDUG00000003228)	ENSSDUG00000003250	mcm7 (ENSSDUG00000003338) ##22	ENSSDUG00000003388	COPS6 (ENSSDUG00000003419)	ENSSDUG00000003440	aurkb (ENSSDUG00000003445)	ENSSDUG00000003457	nkx3-2 (ENSSDUG00000003467)	ENSSDUG00000003477	HS3ST1 (ENSSDUG00000003509)	gsr (ENSSDUG00000003522)	slc30a9 (ENSSDUG00000003564)	GRXCR1 (ENSSDUG00000003591)	atp8a1 (ENSSDUG00000003614)	shisa3 (ENSSDUG00000003749)	BEND4 (ENSSDUG00000003753)	ENSSDUG00000003770
Ovalentaria	ANCESTRAL SPECIES	15	ENSGT00940000157645.e.a	ENSGT01030000234530.a.c.b.b.a.a.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000173984	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.s	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Ovalentaria_B	ANCESTRAL SPECIES	13	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT00950000182968.d.b.a.b	ENSGT01030000234530.a.d.e.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00950000182968.d.b.a.a.b	ENSGT00940000170413.A	ENSGT01030000234530.a.c.b.a.b.s	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939
Pomacentridae	ANCESTRAL SPECIES	4							ENSGT00940000173984	ENSGT01030000234530.a.c.b.b.a.b	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT00940000162676.a.a	ENSGT01030000234530.a.d.e.b.b	ENSGT00950000182968.d.b.a.a.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939
Pomacentridae_A	ANCESTRAL SPECIES	20	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00940000156736.c.a	ENSGT00940000159322	ENSGT01030000234530.a.c.b.b.a.b	ENSGT00940000170413.A	ENSGT01030000234530.a.d.e.b.b	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT00940000162676.a.a	ENSGT00950000182968.d.b.a.a.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000165013.b.b	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939
Amphiprion	ANCESTRAL SPECIES	17						ENSGT01030000234530.a.c.b.a.b.t.a.c.a.b	ENSGT00940000162676.a.a.o.b.b	ENSGT00940000162676.a.a.o.b.a	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.a.c.a.a	ENSGT01030000234530.a.c.b.a.b.t.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000165013.b.b	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000154669.b.b.a.a.j.a	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Clown anemonefish	MODERN SPECIES	467	ENSAOCG00000001437	ENSAOCG00000019749	ENSAOCG00000019731	ENSAOCG00000019676	ENSAOCG00000019647	ENSAOCG00000019623	ENSAOCG00000019590	ENSAOCG00000019575	ENSAOCG00000001421	ENSAOCG00000019524	ENSAOCG00000019448	ITGA6 (ENSAOCG00000019416)	ENSAOCG00000019354	ENSAOCG00000019337	ENSAOCG00000019313	mcm7 (ENSAOCG00000001386) ##22	ENSAOCG00000019215
Orange clownfish	MODERN SPECIES	4	ENSAPEG00000002935	ENSAPEG00000002954	ENSAPEG00000003030	ENSAPEG00000003067	ENSAPEG00000003078	ENSAPEG00000003140	ENSAPEG00000003169	ENSAPEG00000003185	ENSAPEG00000003212	ENSAPEG00000003229	ENSAPEG00000003254	ENSAPEG00000003274	ITGA6 (ENSAPEG00000003294)	ENSAPEG00000003444	ENSAPEG00000003475	mcm7 (ENSAPEG00000003656) ##22	ENSAPEG00000003720	COPS6 (ENSAPEG00000003738)	aurkb (ENSAPEG00000003753)	ENSAPEG00000003785	ENSAPEG00000003803	nkx3-2 (ENSAPEG00000003825)	RAB28 (ENSAPEG00000003839)	ENSAPEG00000003881	HS3ST1 (ENSAPEG00000003896)	ENSAPEG00000003907	ENSAPEG00000003923	gsr (ENSAPEG00000003926)	slc30a9 (ENSAPEG00000003940)	GRXCR1 (ENSAPEG00000003973)	ENSAPEG00000003992
Spiny chromis	MODERN SPECIES	1130									ENSAPOG00000009616	ENSAPOG00000009686	ENSAPOG00000009703	ENSAPOG00000009719	ENSAPOG00000009750	gpc2 (ENSAPOG00000009765)	ENSAPOG00000009795	mcm7 (ENSAPOG00000000284) ##22	ENSAPOG00000009895	COPS6 (ENSAPOG00000009944)	ENSAPOG00000009957	aurkb (ENSAPOG00000009991)	b2m (ENSAPOG00000010002)	ENSAPOG00000010033	nkx3-2 (ENSAPOG00000010072)	ENSAPOG00000010099
Bicolor damselfish	MODERN SPECIES	258									ENSSPAG00000003553	ENSSPAG00000003538	ENSSPAG00000003530	ENSSPAG00000003507	gpc2 (ENSSPAG00000003121)	ENSSPAG00000003046	ENSSPAG00000003027	mcm7 (ENSSPAG00000002973) ##22	ENSSPAG00000002955	COPS6 (ENSSPAG00000002910)	ENSSPAG00000002899	aurkb (ENSSPAG00000002883)	ENSSPAG00000002862	nkx3-2 (ENSSPAG00000002841)	ENSSPAG00000002809	HS3ST1 (ENSSPAG00000002799)	ENSSPAG00000002771	ENSSPAG00000002764	gsr (ENSSPAG00000002739)	slc30a9 (ENSSPAG00000002544)	slc30a9 (ENSSPAG00000002423)	GRXCR1 (ENSSPAG00000002373)	atp8a1 (ENSSPAG00000002132)
Cichlidae	ANCESTRAL SPECIES	8						ENSGT01030000234530.a.c.b.a.b.s.b.b.b	ENSGT01030000234530.a.c.b.b.a.a.b	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b.s.b.a.a.a.a.b.a	ENSGT00950000182968.d.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.s.b.a.a.b.a.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000177939
Pseudocrenilabrinae	ANCESTRAL SPECIES	17												ENSGT01030000234530.a.d.e.b.b.g.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	24													ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Haplochromini	ANCESTRAL SPECIES	14													ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Burton s mouthbrooder	MODERN SPECIES	450												ENSHBUG00000007143	ENSHBUG00000007127	gpc2 (ENSHBUG00000007118)	ENSHBUG00000007105	mcm7 (ENSHBUG00000007062) ##22	ENSHBUG00000007006	COPS6 (ENSHBUG00000007000)	ENSHBUG00000006971	aurkb (ENSHBUG00000006934)	ENSHBUG00000006778	ENSHBUG00000006705	nkx3-2 (ENSHBUG00000006681)	RAB28 (ENSHBUG00000006668)	ENSHBUG00000006628	HS3ST1 (ENSHBUG00000006610)	ENSHBUG00000006599	ENSHBUG00000006585	ENSHBUG00000006579	gsr (ENSHBUG00000006561)	slc30a9 (ENSHBUG00000006489)
Haplochromini_A	ANCESTRAL SPECIES	13													ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360
P. nyererei	MODERN SPECIES	303											ENSPNYG00000007436	ENSPNYG00000007449	gpc2 (ENSPNYG00000007469)	ENSPNYG00000007495	ENSPNYG00000007513	mcm7 (ENSPNYG00000007530) ##22	ENSPNYG00000007635	COPS6 (ENSPNYG00000007653)	ENSPNYG00000007697	aurkb (ENSPNYG00000007748)	ENSPNYG00000007865	nkx3-2 (ENSPNYG00000007878)	RAB28 (ENSPNYG00000007910)	HS3ST1 (ENSPNYG00000007916)	ENSPNYG00000007924	ENSPNYG00000007930	gsr (ENSPNYG00000007948)	slc30a9 (ENSPNYG00000008049)	GRXCR1 (ENSPNYG00000008137)	atp8a1 (ENSPNYG00000008194)	shisa3 (ENSPNYG00000008296)
Haplochromini_B	ANCESTRAL SPECIES	7													ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360
Zebra mbuna	MODERN SPECIES	1102													ITGA6 (ENSMZEG00005009507)	gpc2 (ENSMZEG00005009495)	ENSMZEG00005009357	mcm7 (ENSMZEG00005009307) ##22	ENSMZEG00005009293	COPS6 (ENSMZEG00005009278)	ENSMZEG00005009261	aurkb (ENSMZEG00005009240)	ENSMZEG00005009221	nkx3-2 (ENSMZEG00005009214)	RAB28 (ENSMZEG00005009186)	ENSMZEG00005009148	HS3ST1 (ENSMZEG00005009121)	ENSMZEG00005009115	gsr (ENSMZEG00005009098)	slc30a9 (ENSMZEG00005009078)	GRXCR1 (ENSMZEG00005009028)	atp8a1 (ENSMZEG00005008880)	shisa3 (ENSMZEG00005008844)
Eastern happy	MODERN SPECIES	11	ENSACLG00000004708	ENSACLG00000004705	ENSACLG00000004702	ENSACLG00000004646	ENSACLG00000004578	ENSACLG00000004531	ENSACLG00000004522	ENSACLG00000004508	ENSACLG00000004463	ENSACLG00000004284	ENSACLG00000004268	ENSACLG00000004246	ITGA6 (ENSACLG00000004103)	gpc2 (ENSACLG00000004061)	ENSACLG00000003974	mcm7 (ENSACLG00000003872) ##22	ENSACLG00000003861	COPS6 (ENSACLG00000003834)	ENSACLG00000003817	aurkb (ENSACLG00000003796)	ENSACLG00000003755	ENSACLG00000003749	ENSACLG00000003745	nkx3-2 (ENSACLG00000003738)	RAB28 (ENSACLG00000003712)	ENSACLG00000003707	HS3ST1 (ENSACLG00000003675)	ENSACLG00000003655	ENSACLG00000003648	ENSACLG00000003645	ENSACLG00000003641
Lyretail cichlid	MODERN SPECIES	547												ENSNBRG00000024378	ENSNBRG00000024379	gpc2 (ENSNBRG00000024380)	ENSNBRG00000024381	mcm7 (ENSNBRG00000024382) ##22	ENSNBRG00000024383	COPS6 (ENSNBRG00000024388)	ENSNBRG00000024389	aurkb (ENSNBRG00000024390)	ENSNBRG00000024391	nkx3-2 (ENSNBRG00000024392)	RAB28 (ENSNBRG00000024393)	HS3ST1 (ENSNBRG00000024394)
Nile tilapia	MODERN SPECIES	11	ENSONIG00000000965	ENSONIG00000019884	ENSONIG00000002335	ENSONIG00000002338	ENSONIG00000002339	ENSONIG00000038164	ENSONIG00000002341	ENSONIG00000002342	ENSONIG00000038873	ENSONIG00000031686	ENSONIG00000002343	ENSONIG00000002344	gpc2 (ENSONIG00000002348)	ENSONIG00000028895	ENSONIG00000042159	mcm7 (ENSONIG00000002357) ##22	ENSONIG00000030352	COPS6 (ENSONIG00000002367)	ENSONIG00000002370	aurkb (ENSONIG00000041999)	ENSONIG00000032183	nkx3-2 (ENSONIG00000041276)	RAB28 (ENSONIG00000002380)	HS3ST1 (ENSONIG00000020857)	ENSONIG00000040942	ENSONIG00000034441	ENSONIG00000031896	ENSONIG00000002383	ENSONIG00000035337	ENSONIG00000032053	ENSONIG00000043013
Midas cichlid	MODERN SPECIES	1281																mcm7 (ENSACIG00000003670) ##22	ENSACIG00000003654	COPS6 (ENSACIG00000003630)	ENSACIG00000003615	aurkb (ENSACIG00000003527)	ENSACIG00000003514	nkx3-2 (ENSACIG00000003492)	RAB28 (ENSACIG00000003476)
Atherinomorphae	ANCESTRAL SPECIES	9	ENSGT01030000234530.a.d.e.b.a.a.b	ENSGT01030000234530.a.c.b.a.a	ENSGT01030000234530.a.d.e.b.a.a.a	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT01030000234530.a.c.b.b.a.a.b.b	ENSGT00940000173984	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.a.a.b	ENSGT00940000170413.B	ENSGT01030000234530.a.c.b.a.b.t.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Oryzias	ANCESTRAL SPECIES	33	ENSGT01030000234530.a.d.e.a	ENSGT00940000173984.r.b	ENSGT01030000234530.a.c.b.b.a.a.b.a	ENSGT01030000234530.a.d.e.b.b.l.b	ENSGT01030000234530.a.d.e.b.b.k.b.b	ENSGT01030000234530.a.d.e.b.b.k.a.a	ENSGT01030000234530.a.d.e.b.b.k.a.b	ENSGT01030000234530.a.d.e.b.b.l.a	ENSGT01030000234530.a.d.e.b.b.k.b.a	ENSGT00940000173984.r.a	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Oryzias_b	ANCESTRAL SPECIES	23	ENSGT01030000234530.a.d.e.a	ENSGT00940000173984.r.b	ENSGT01030000234530.a.c.b.b.a.a.b.a	ENSGT01030000234530.a.d.e.b.b.l.b	ENSGT01030000234530.a.d.e.b.b.k.b.b	ENSGT01030000234530.a.d.e.b.b.k.a.a	ENSGT01030000234530.a.d.e.b.b.k.a.b	ENSGT01030000234530.a.d.e.b.b.l.a	ENSGT01030000234530.a.d.e.b.b.k.b.a	ENSGT00940000173984.r.a	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Indian medaka	MODERN SPECIES	16	ENSOMEG00000012128	ENSOMEG00000012185	ENSOMEG00000012205	ENSOMEG00000012221	ENSOMEG00000012244	ENSOMEG00000000308	ENSOMEG00000012272	ENSOMEG00000012289	ENSOMEG00000012300	ENSOMEG00000012328	ENSOMEG00000012340	ENSOMEG00000012357	ENSOMEG00000000696	gpc2 (ENSOMEG00000012394)	ENSOMEG00000012446	mcm7 (ENSOMEG00000012495) ##22	ENSOMEG00000012520	COPS6 (ENSOMEG00000012556)	ENSOMEG00000012574	ENSOMEG00000012592	nkx3-2 (ENSOMEG00000012613)	RAB28 (ENSOMEG00000012673)	ENSOMEG00000012725	HS3ST1 (ENSOMEG00000012752)	ENSOMEG00000012762	ENSOMEG00000012767	gsr (ENSOMEG00000012789)	slc30a9 (ENSOMEG00000012829)	GRXCR1 (ENSOMEG00000012857)	atp8a1 (ENSOMEG00000012984)	shisa3 (ENSOMEG00000013007)
Javanese ricefish	MODERN SPECIES	1	ENSOJAG00000012833	ENSOJAG00000012823	ENSOJAG00000012812	ENSOJAG00000012802	ENSOJAG00000012775	ENSOJAG00000012697	ENSOJAG00000012681	ENSOJAG00000012631	ENSOJAG00000012570	ENSOJAG00000012563	ENSOJAG00000012531	ENSOJAG00000012515	ENSOJAG00000012457	gpc2 (ENSOJAG00000012393)	ENSOJAG00000012382	mcm7 (ENSOJAG00000011699) ##22	ENSOJAG00000011657	COPS6 (ENSOJAG00000011556)	ENSOJAG00000011547	aurkb (ENSOJAG00000011520)	ENSOJAG00000011516	ENSOJAG00000011497	nkx3-2 (ENSOJAG00000011493)	RAB28 (ENSOJAG00000011456)	HS3ST1 (ENSOJAG00000011421)	ENSOJAG00000011404	ENSOJAG00000011396	gsr (ENSOJAG00000011056)	slc30a9 (ENSOJAG00000010686)	GRXCR1 (ENSOJAG00000010661)	ENSOJAG00000010627
Oryzias_a	ANCESTRAL SPECIES	19	ENSGT00940000173984.r.b	ENSGT01030000234530.a.c.b.b.a.a.b.a	ENSGT01030000234530.a.d.e.b.b.l.b	ENSGT01030000234530.a.d.e.b.b.k.b.b	ENSGT01030000234530.a.d.e.b.b.k.a.a	ENSGT01030000234530.a.d.e.b.b.k.a.b	ENSGT01030000234530.a.d.e.b.b.l.a	ENSGT01030000234530.a.d.e.b.b.k.b.a	ENSGT00940000173984.r.a	ENSGT01030000234530.a.c.b.b.a.b.b	ENSGT00950000182968.d.b.a.a.a	ENSGT01030000234530.a.c.b.b.a.b.a	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Japanese Medaka HdrR	MODERN SPECIES	1	nitr22 (ENSORLG00000000381)	ENSORLG00000000389	ENSORLG00000025501	ENSORLG00000027260	ENSORLG00000022449	ENSORLG00000026771	ENSORLG00000029650	ENSORLG00000027500	ENSORLG00000018227	ENSORLG00000026228	ENSORLG00000029652	ENSORLG00000023542	ENSORLG00000000441	gpc2 (ENSORLG00000000476)	ENSORLG00000000491	mcm7 (ENSORLG00000000527) ##22	ENSORLG00000000538	COPS6 (ENSORLG00000000554)	ENSORLG00000029587	aurkb (ENSORLG00000000578)	ENSORLG00000000588	ENSORLG00000022787	nkx3-2 (ENSORLG00000029707)	ENSORLG00000000606	ENSORLG00000022874	HS3ST1 (ENSORLG00000030296)	ENSORLG00000024711	ENSORLG00000022674	gsr (ENSORLG00000000624)	slc30a9 (ENSORLG00000000650)	GRXCR1 (ENSORLG00000000654)
Chinese medaka	MODERN SPECIES	543														ENSOSIG00000010810	gpc2 (ENSOSIG00000010809)	mcm7 (ENSOSIG00000010798) ##22	ENSOSIG00000010793	COPS6 (ENSOSIG00000010757)	ENSOSIG00000010754	aurkb (ENSOSIG00000010752)	ENSOSIG00000010746	nkx3-2 (ENSOSIG00000010742)	RAB28 (ENSOSIG00000010741)
Cyprinodontiformes	ANCESTRAL SPECIES	8	ENSGT01030000234530.a.c.b.b.a.a.b.b	ENSGT01030000234530.a.c.b.a.b.t.a	ENSGT01030000234530.a.c.b.b.a.a.a.b	ENSGT00940000162676.a.a	ENSGT00940000170413.A	ENSGT01030000234530.a.c.b.a.b.t.b.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.b.a	ENSGT01030000234530.a.c.b.b.a.a.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a	ENSGT00940000170413.B.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346
Aplocheiloidei	ANCESTRAL SPECIES	13	ENSGT01030000234530.a.d.e.a	ENSGT00940000173984	ENSGT00940000170413.B.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.b.a	ENSGT01030000234530.a.c.b.b.a.a.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a	ENSGT00940000170413.B.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b	ENSGT01030000234530.a.d.e.b.b	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT00940000170871	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00530000067117	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000168577	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b
Mangrove rivulus	MODERN SPECIES	10	ENSKMAG00000018704	ENSKMAG00000018715	ENSKMAG00000018729	ENSKMAG00000018747	ENSKMAG00000018755	ENSKMAG00000018770	ENSKMAG00000018786	ENSKMAG00000018801	ENSKMAG00000018816	ENSKMAG00000018834	gpc2 (ENSKMAG00000018862)	ENSKMAG00000018881	ENSKMAG00000018900	ENSKMAG00000018916	ENSKMAG00000018936	mcm7 (ENSKMAG00000018958) ##22	ENSKMAG00000019054	COPS6 (ENSKMAG00000019077)	ENSKMAG00000019102	aurkb (ENSKMAG00000019109)	ENSKMAG00000019121	nkx3-2 (ENSKMAG00000019133)	ENSKMAG00000019139	HS3ST1 (ENSKMAG00000019173)	ENSKMAG00000019183	gsr (ENSKMAG00000019190)	slc30a9 (ENSKMAG00000019209)	GRXCR1 (ENSKMAG00000019248)	ATP8A1 (ENSKMAG00000019276)	shisa3 (ENSKMAG00000019340)	BEND4 (ENSKMAG00000019352)
Turquoise killifish	MODERN SPECIES	1610	FGFRL1A (ENSNFUG00015003941)	slit3 (ENSNFUG00015002545)	ENSNFUG00015002297	ENSNFUG00015002293	ENSNFUG00015002290	ENSNFUG00015002254	Nfu_g_1_004472 (ENSNFUG00015002237)	ENSNFUG00015002218	ENSNFUG00015002212	ENSNFUG00015002201	ENSNFUG00015002143	GPC6L (ENSNFUG00015002103)	ENSNFUG00015002087	ENSNFUG00015002084	ENSNFUG00015002082	MCM7 (ENSNFUG00015002038) ##22	ENSNFUG00015002021	COPS6 (ENSNFUG00015002003)	ENSNFUG00015001968	aurkb (ENSNFUG00015001956)	ENSNFUG00015001950	ENSNFUG00015001944	nkx3-2 (ENSNFUG00015001934)	ENSNFUG00015001917	ENSNFUG00015001883	HS3ST1 (ENSNFUG00015001881)	ENSNFUG00015001879	ENSNFUG00015001859	ZNF518B (ENSNFUG00015001851)	slc30a9 (ENSNFUG00015001548)	GRXCR1 (ENSNFUG00015001476)
Cyprinodontoidei	ANCESTRAL SPECIES	23					ENSGT00940000170413.B.a.b.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.b	ENSGT00940000170413.B.a.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
NAME_4	ANCESTRAL SPECIES	168						ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.b	ENSGT00940000170413.B.a.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i	ENSGT00940000155353.b	ENSGT01050000244897.a.a.a.ab	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00950000183073.a.a.b	ENSGT00390000005067.a	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000161833	ENSGT00940000160449	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110	ENSGT00940000161360	ENSGT00390000014963
Sheepshead minnow	MODERN SPECIES	511								ENSCVAG00000001757	ENSCVAG00000001749	ENSCVAG00000001735	ENSCVAG00000001728	ENSCVAG00000000069	gpc2 (ENSCVAG00000001724)	ENSCVAG00000001717	ENSCVAG00000001715	mcm7 (ENSCVAG00000000067) ##22	ENSCVAG00000001703	ENSCVAG00000001698	aurkb (ENSCVAG00000001696)	ENSCVAG00000001692	nkx3-2 (ENSCVAG00000001687)	ENSCVAG00000001684	HS3ST1 (ENSCVAG00000001677)	ENSCVAG00000001675	ENSCVAG00000001673	gsr (ENSCVAG00000001672)	slc30a9 (ENSCVAG00000001662)	GRXCR1 (ENSCVAG00000001645)
Mummichog	MODERN SPECIES	996														ENSFHEG00000015165	ENSFHEG00000015136	mcm7 (ENSFHEG00000015117) ##22	COPS6 (ENSFHEG00000015058)	ENSFHEG00000015011	ENSFHEG00000014997	aurkb (ENSFHEG00000014967)	ENSFHEG00000014934
Poeciliinae	ANCESTRAL SPECIES	11	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.b.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.a.a	ENSGT00940000170413.B.a.b.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.a	ENSGT00940000170413.B.a.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
Platyfish	MODERN SPECIES	15	ENSXMAG00000027472	ENSXMAG00000021675	ENSXMAG00000029264	ENSXMAG00000021581	ENSXMAG00000029391	ENSXMAG00000022441	ENSXMAG00000025013	ENSXMAG00000027440	ENSXMAG00000029048	ENSXMAG00000025629	ENSXMAG00000028811	ENSXMAG00000016450	ENSXMAG00000021486	gpc2 (ENSXMAG00000016419)	ENSXMAG00000025123	mcm7 (ENSXMAG00000016334) ##22	ENSXMAG00000022228	COPS6 (ENSXMAG00000021939)	ENSXMAG00000016307	aurkb (ENSXMAG00000016292)	ENSXMAG00000016291	nkx3-2 (ENSXMAG00000023793)	ENSXMAG00000016277	HS3ST1 (ENSXMAG00000026035)	ENSXMAG00000016271	ENSXMAG00000021608	gsr (ENSXMAG00000016221)	slc30a9 (ENSXMAG00000016198)	GRXCR1 (ENSXMAG00000016197)	atp8a1 (ENSXMAG00000016159)	shisa3 (ENSXMAG00000022521)
Poecilia	ANCESTRAL SPECIES	33			ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.b.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.a	ENSGT00940000170413.B.a.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00940000175410	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354	ENSGT00940000158980	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110
NAME_6	ANCESTRAL SPECIES	98	ENSGT01030000234530.a.d.e.b.a.a.a.e	ENSGT00940000162676.a.a	ENSGT01030000234530.a.c.b.b.a.a.a.b.e.b	ENSGT00940000170413.B.a.b.a.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.b.a.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.b.a.a.e	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.b.a	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.a.a.b	ENSGT01030000234530.a.c.b.a.b.t.b.a.b.b.a	ENSGT01030000234530.a.d.e.b.b.i.a	ENSGT01030000234530.a.d.e.b.b.i.b	ENSGT01050000244897.a.a.a	ENSGT00950000182972.a.b	ENSGT01050000244824.C ##22	ENSGT00390000005067.a	ENSGT00950000183073.a.a.b	ENSGT00390000003354.j	ENSGT00940000158980.nb	ENSGT00940000156198.c.a	ENSGT00940000161843	ENSGT00940000164241	ENSGT00940000160449	ENSGT00940000161846	ENSGT00940000160595.b	ENSGT00940000156986	ENSGT00390000008346	ENSGT00940000159219.b	ENSGT00940000157110.bb	ENSGT00940000161360
Sailfin molly	MODERN SPECIES	1462			ENSPLAG00000006466	ENSPLAG00000006454	ENSPLAG00000006437	ENSPLAG00000006355	ENSPLAG00000006335	ENSPLAG00000006321	ENSPLAG00000006301	ENSPLAG00000006290	ENSPLAG00000006270	ENSPLAG00000006258	ENSPLAG00000000840	gpc2 (ENSPLAG00000006226)	ENSPLAG00000006201	mcm7 (ENSPLAG00000006162) ##22	ENSPLAG00000006118	COPS6 (ENSPLAG00000006100)	ENSPLAG00000006075	aurkb (ENSPLAG00000006058)	ENSPLAG00000006043	nkx3-2 (ENSPLAG00000006028)	ENSPLAG00000006020
Amazon molly	MODERN SPECIES	481	ENSPFOG00000022985	ENSPFOG00000021852	ENSPFOG00000001313	ENSPFOG00000001351	ENSPFOG00000022775	ENSPFOG00000001364	ENSPFOG00000001384	ENSPFOG00000023936	ENSPFOG00000024489	ENSPFOG00000001406	ENSPFOG00000023733	ENSPFOG00000001430	ENSPFOG00000001461	gpc2 (ENSPFOG00000001609)	ENSPFOG00000001981	mcm7 (ENSPFOG00000002340) ##22	ENSPFOG00000002504	COPS6 (ENSPFOG00000002531)	COPS6 (ENSPFOG00000002582)	ENSPFOG00000002646	aurkb (ENSPFOG00000002658)	ENSPFOG00000002769	ENSPFOG00000002788	aurkb (ENSPFOG00000002811)	ENSPFOG00000002857	nkx3-2 (ENSPFOG00000002882)	ENSPFOG00000002910	HS3ST1 (ENSPFOG00000020423)	ENSPFOG00000003039	ENSPFOG00000020424	gsr (ENSPFOG00000003063)
Guppy	MODERN SPECIES	440	ENSPREG00000014268	ENSPREG00000014265	ENSPREG00000014262	ENSPREG00000014252	ENSPREG00000014245	ENSPREG00000014236	ENSPREG00000014228	ENSPREG00000014217	ENSPREG00000014210	ENSPREG00000014178	ENSPREG00000014166	ENSPREG00000014155	ENSPREG00000014136	gpc2 (ENSPREG00000014107)	ENSPREG00000014094	mcm7 (ENSPREG00000014071) ##22	ENSPREG00000014058	ENSPREG00000014042	COPS6 (ENSPREG00000014024)	aurkb (ENSPREG00000013954)	ENSPREG00000013936	ENSPREG00000013906	nkx3-2 (ENSPREG00000013893)	ENSPREG00000013861	HS3ST1 (ENSPREG00000013838)	ENSPREG00000013830	gsr (ENSPREG00000013744)	slc30a9 (ENSPREG00000013639)	GRXCR1 (ENSPREG00000013612)	atp8a1 (ENSPREG00000013400)	shisa3 (ENSPREG00000013340)
Spotted gar	MODERN SPECIES	658	ENSLOCG00000013214	ENSLOCG00000013204	ENSLOCG00000013201	ENSLOCG00000013194	ENSLOCG00000013187	ENSLOCG00000013181	ENSLOCG00000013169	si:ch73-335l21.4 (ENSLOCG00000013165)	ENSLOCG00000013158	ENSLOCG00000013152	med11 (ENSLOCG00000013149)	arrb2a (ENSLOCG00000013132)	gpc2 (ENSLOCG00000013124)	ENSLOCG00000013098	ap4m1 (ENSLOCG00000013087)	mcm7 (ENSLOCG00000013075) ##22	and3 (ENSLOCG00000013069)	COPS6 (ENSLOCG00000013063)	ENSLOCG00000013053	zanl (ENSLOCG00000013041)	trappc14 (ENSLOCG00000013030)	gal3st4 (ENSLOCG00000013024)	gal3st4 (ENSLOCG00000013014)	ENSLOCG00000013009	ENSLOCG00000013002	ENSLOCG00000013000	ENSLOCG00000012992	ENSLOCG00000012988	ENSLOCG00000012985	ENSLOCG00000012980	ENSLOCG00000012978
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Lamprey	MODERN SPECIES	1054																mcm7 (ENSPMAG00000005356) ##22	ENSPMAG00000005462	katnal2 (ENSPMAG00000005512)	ENSPMAG00000005551
Hagfish	MODERN SPECIES	1244											rasl10a (ENSEBUG00000015143)	ap1b1 (ENSEBUG00000009835)	ENSEBUG00000004818	rpl18 (ENSEBUG00000016170)	ENSEBUG00000014455	mcm7 (ENSEBUG00000014416) ##22	ENSEBUG00000013552	ENSEBUG00000000771	ENSEBUG00000006293
Ciona	ANCESTRAL SPECIES	1043															ENSGT00390000010165	ENSGT01050000244824.C ##22
Ciona savignyi	MODERN SPECIES	13	ENSCSAVG00000007381	ENSCSAVG00000007384	ENSCSAVG00000007389	ENSCSAVG00000007393	ENSCSAVG00000007395	ENSCSAVG00000007396	ENSCSAVG00000007461	ENSCSAVG00000007571	ENSCSAVG00000007594	ENSCSAVG00000007596	ENSCSAVG00000007603	ENSCSAVG00000007612	ENSCSAVG00000007630	ENSCSAVG00000007633	ENSCSAVG00000007637	ENSCSAVG00000007691 ##22	ENSCSAVG00000008006	ENSCSAVG00000008010	ENSCSAVG00000008017	ENSCSAVG00000008029	ENSCSAVG00000008082	ENSCSAVG00000008087	ENSCSAVG00000008089	ENSCSAVG00000008091	ENSCSAVG00000008094	ENSCSAVG00000008097	ENSCSAVG00000008139	ENSCSAVG00000008142	ENSCSAVG00000008144	ENSCSAVG00000008154	ENSCSAVG00000008156
Ciona intestinalis	MODERN SPECIES		ENSCING00000004800	ENSCING00000013792	ENSCING00000024714	ENSCING00000013789	ENSCING00000013790	ENSCING00000004822	ENSCING00000004805	ENSCING00000004803	ENSCING00000004824	leprecan (ENSCING00000005866)	ENSCING00000005864	ENSCING00000023319	ENSCING00000001281	ENSCING00000017547	ENSCING00000004387	ENSCING00000004388 ##22	ENSCING00000001263	ENSCING00000001272	ENSCING00000017989	ENSCING00000004357	ENSCING00000013783	ENSCING00000022508	ENSCING00000004377	ENSCING00000022121	ENSCING00000018964	ENSCING00000023394	ENSCING00000013785	ENSCING00000013786	ENSCING00000004385	ENSCING00000013787	ENSCING00000022177
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01050000244824.C ##22
Caenorhabditis elegans	MODERN SPECIES	5	srh-193 (WBGene00005406)	srh-194 (WBGene00005407)	F47D2.11 (WBGene00206392)	ZC132.11 (WBGene00269432)	ZC132.3 (WBGene00022522)	srh-192 (WBGene00005405)	ZC132.9 (WBGene00022527)	R02D1.2 (WBGene00235310)	nhr-125 (WBGene00003715)	D2063.1 (WBGene00017060)	oac-12 (WBGene00017061)	irld-1 (WBGene00044529)	glrx-3 (WBGene00017062)	figl-1 (WBGene00017981)	hpo-18 (WBGene00017982)	mcm-7 (WBGene00003159) ##22	F32D1.3 (WBGene00017983)	grl-13 (WBGene00001722)	F32D1.11 (WBGene00044530)	gmpr-1 (WBGene00017984)	fipp-1 (WBGene00017988)	neg-1 (WBGene00017985)	F32D1.7 (WBGene00017986)	F32D1.8 (WBGene00017987)	F13A2.1 (WBGene00017410)	F13A2.2 (WBGene00017411)	F13A2.10 (WBGene00195154)	F13A2.9 (WBGene00044531)	F13A2.3 (WBGene00017412)	F13A2.4 (WBGene00017413)	F13A2.5 (WBGene00017414)
Fruitfly	MODERN SPECIES	18	Fhos (FBgn0266084)	CG6576 (FBgn0035924)	Acbp5 (FBgn0035926)	CG13310 (FBgn0035928)	CG13311 (FBgn0035929)	CG34426 (FBgn0085455)	CG32023 (FBgn0052023)	CG34427 (FBgn0085456)	CG13312 (FBgn0035931)	CG32024 (FBgn0052024)	CG13308 (FBgn0035932)	CG13309 (FBgn0035933)	dally (FBgn0263930)	CG32026 (FBgn0052026)	CG43169 (FBgn0262788)	Mcm7 (FBgn0020633) ##22	TrpA1 (FBgn0035934)	mfr (FBgn0266757)	Tsp66E (FBgn0035936)	CG43783 (FBgn0264305)	orb2 (FBgn0264307)	GNBP3 (FBgn0040321)	mRpL12 (FBgn0011787)	CG13313 (FBgn0035941)	ValRS-m (FBgn0035942)	CG5653 (FBgn0035943)	CG5021 (FBgn0035944)	CG5026 (FBgn0035945)	pix (FBgn0086706)	Srp68 (FBgn0035947)	CG5644 (FBgn0035948)
Yeast	MODERN SPECIES	1	YBR191W-A	RIM2 (YBR192W)	MED8 (YBR193C)	AIM4 (YBR194W)	MSI1 (YBR195C)	PGI1 (YBR196C)	YBR196C-A	YBR196C-B	YBR197C	TAF5 (YBR198C)	KTR4 (YBR199W)	BEM1 (YBR200W)	YBR200W-A	DER1 (YBR201W)	YBR201C-A	MCM7 (YBR202W) ##22	COS111 (YBR203W)	LDH1 (YBR204C)	KTR3 (YBR205W)	YBR206W	FTH1 (YBR207W)	DUR1,2 (YBR208C)	YBR209W	ERV15 (YBR210W)	AME1 (YBR211C)	NGR1 (YBR212W)	MET8 (YBR213W)	SDS24 (YBR214W)	HPC2 (YBR215W)	YBP1 (YBR216C)	ATG12 (YBR217W)
Fungi/Metazoa group	DUPLICATION
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01050000244824.D ##22
Bilateria	ANCESTRAL SPECIES																	ENSGT01050000244824.D ##22
Chordata	DUPLICATION
Chordata	DUPLICATION
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.a.a ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	1706																ENSGT01050000244824.D.a.a ##22	ENSGT00940000154872.C
Elephant shark	MODERN SPECIES	1643									ENSCMIG00000007239	ENSCMIG00000007241	CNTNAP2 (ENSCMIG00000007244)	cul1b (ENSCMIG00000007276)	ezh2 (ENSCMIG00000007349)	pdia4 (ENSCMIG00000007437)	RAMP3 (ENSCMIG00000007439)	ENSCMIG00000007458 ##22	adcy1b (ENSCMIG00000007519)	tmem18 (ENSCMIG00000007533)
Euteleostomi	ANCESTRAL SPECIES	258								ENSGT00940000166120	ENSGT00390000001319	ENSGT00390000016016.A	ENSGT00940000154516.b	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000157738	ENSGT00940000161026	ENSGT01050000244824.D.a.a ##22	ENSGT00940000154872.C	ENSGT00940000157394	ENSGT00940000158092	ENSGT00940000156328.b	ENSGT00940000162104	ENSGT00390000000706
Sarcopterygii	ANCESTRAL SPECIES	283									ENSGT00390000001319	ENSGT00390000016016.A	ENSGT00940000154516.b	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000157738	ENSGT00940000161026	ENSGT01050000244824.D.a.a ##22	ENSGT00940000154872.C	ENSGT00940000157394	ENSGT00940000158092	ENSGT00940000156328.b	ENSGT00940000162104	ENSGT00390000000706
Tetrapoda	ANCESTRAL SPECIES	40	ENSGT00940000154014.a	ENSGT00440000033985	ENSGT00390000011072	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000155450	ENSGT00390000001319	ENSGT00390000016016.A	ENSGT00940000164262	ENSGT00940000154136	ENSGT00940000154516.b	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000157738	ENSGT00940000161026	ENSGT01050000244824.D.a.a ##22	ENSGT00940000154872.C	ENSGT00940000157394	ENSGT00940000158092	ENSGT00940000156328.b	ENSGT00940000162104	ENSGT00390000000706	ENSGT00390000014376	ENSGT00940000157781	ENSGT00940000161703	ENSGT00720000108792.A	ENSGT00940000162844	ENSGT00940000156782.c	ENSGT00940000161552	ENSGT00940000156004	ENSGT00940000155909
Anura	ANCESTRAL SPECIES	677																ENSGT01050000244824.D.a.a ##22	ENSGT00940000154872.C
Frog	MODERN SPECIES	6	DCLK3 (ENSXETG00000004976)	ENSXETG00000047156	stac (ENSXETG00000004974)	cobl (ENSXETG00000004971)	grb10 (ENSXETG00000004962)	ddc (ENSXETG00000004961)	fignl1 (ENSXETG00000015704)	ikzf1 (ENSXETG00000015684)	spata48 (ENSXETG00000035911)	ENSXETG00000048145	vwc2 (ENSXETG00000037075)	upp1 (ENSXETG00000015681)	c7orf57 (ENSXETG00000031709)	ENSXETG00000044352	ramp3 (ENSXETG00000015679)	mcm6.2 (ENSXETG00000015671) ##22	adcy1 (ENSXETG00000015663)	igfbp1 (ENSXETG00000015656)	tns3 (ENSXETG00000015646)	pkd1l1 (ENSXETG00000032537)	clptm1l (ENSXETG00000015645)	tert (ENSXETG00000015624)	slc6a19 (ENSXETG00000015619)	ccr2 (ENSXETG00000038447)	ENSXETG00000036520	rhagl (ENSXETG00000015612)	mplkip (ENSXETG00000048813)	glb1l (ENSXETG00000015609)	ENSXETG00000045214	sugct (ENSXETG00000015599)	inhba (ENSXETG00000001861)
Ciona	ANCESTRAL SPECIES	858															ENSGT00940000157676	ENSGT01050000244824.D.a.a ##22
Ciona intestinalis	MODERN SPECIES	12	ENSCING00000013236	ENSCING00000006447	ENSCING00000018638	ENSCING00000006443	ENSCING00000013237	ENSCING00000006439	ENSCING00000006437	ENSCING00000006433	ENSCING00000018126	ENSCING00000013239	ENSCING00000013240	ENSCING00000006426	ENSCING00000006415	ENSCING00000010961	ENSCING00000006411	ENSCING00000006371 ##22	ENSCING00000022238	ENSCING00000024722	ENSCING00000006353	ENSCING00000006356	ENSCING00000006359	ENSCING00000024037	ENSCING00000006365	ENSCING00000023970	ENSCING00000018153	ENSCING00000020832	ENSCING00000022828	ENSCING00000020288	ENSCING00000005453	ENSCING00000013246	ENSCING00000005451
Ciona savignyi	MODERN SPECIES	67	ENSCSAVG00000005685	ENSCSAVG00000005520	ENSCSAVG00000005517	ENSCSAVG00000005446	ENSCSAVG00000005442	ENSCSAVG00000005438	ENSCSAVG00000005434	ENSCSAVG00000005409	ENSCSAVG00000005407	ENSCSAVG00000005403	ENSCSAVG00000005398	ENSCSAVG00000005396	ENSCSAVG00000005391	ENSCSAVG00000005355	ENSCSAVG00000005335	ENSCSAVG00000005216 ##22	ENSCSAVG00000004937	ENSCSAVG00000004934	ENSCSAVG00000004931	ENSCSAVG00000004930
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.a.b ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.a.b ##22
Elephant shark	MODERN SPECIES	1530	ENSCMIG00000009284	zgc:113162 (ENSCMIG00000009277)	TNC (ENSCMIG00000009038)	pappaa (ENSCMIG00000008942)	ASTN2 (ENSCMIG00000008928)	brinp1 (ENSCMIG00000008925)	ENSCMIG00000008923	ENSCMIG00000008921	ENSCMIG00000008918	NXPH2 (ENSCMIG00000008917)	spopla (ENSCMIG00000008905)	HNMT (ENSCMIG00000008896)	THSD7B (ENSCMIG00000008887)	cxcr4 (ENSCMIG00000008881)	dars1 (ENSCMIG00000008857)	mcm6 (ENSCMIG00000008585) ##22	LCT (ENSCMIG00000008504)	UBXN4 (ENSCMIG00000008493)	R3HDM1 (ENSCMIG00000008457)	ZRANB3 (ENSCMIG00000008375)	rab3gap1 (ENSCMIG00000008312)	ENSCMIG00000008296	ENSCMIG00000008294	ccnt2a (ENSCMIG00000008284)	acmsd (ENSCMIG00000008270)	tmem163a (ENSCMIG00000008264)	mgat5 (ENSCMIG00000008251)	ENSCMIG00000008243	LYPD1 (ENSCMIG00000008240)	gpr39 (ENSCMIG00000008236)	SLC35F5 (ENSCMIG00000008172)
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b ##22
Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b ##22
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b ##22
Hagfish	MODERN SPECIES	623														ENSEBUG00000004393	ENSEBUG00000001222	mcm6l (ENSEBUG00000001755) ##22	ENSEBUG00000011131	ENSEBUG00000011916	ENSEBUG00000013139	ENSEBUG00000007254	atp5f1b (ENSEBUG00000006195)	ENSEBUG00000010015	copz1 (ENSEBUG00000010140)	ENSEBUG00000010003	ENSEBUG00000009222	ENSEBUG00000013009	ENSEBUG00000007752	ENSEBUG00000012559
Lamprey	MODERN SPECIES	4171																mcm6l (ENSPMAG00000005193) ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b ##22
Euteleostomi	ANCESTRAL SPECIES	31	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000158887	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Sarcopterygii	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000181625	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT00970000197574
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Amniota	ANCESTRAL SPECIES	6	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a
Sauria	ANCESTRAL SPECIES		ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a
Archosauria	ANCESTRAL SPECIES	6	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Aves	ANCESTRAL SPECIES	8	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Neognathae	ANCESTRAL SPECIES	6	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324.ab.b	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324.ab.b	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000171141	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324.ab.b	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Common canary	MODERN SPECIES	8	ZEB2 (ENSSCAG00000008306)	ENSSCAG00000008312	GTDC1 (ENSSCAG00000008330)	ARHGAP15 (ENSSCAG00000008352)	KYNU (ENSSCAG00000008360)	LRP1B (ENSSCAG00000008544)	ENSSCAG00000009974	ENSSCAG00000009989	NXPH2 (ENSSCAG00000009997)	SPOPL (ENSSCAG00000010004)	HNMT (ENSSCAG00000010007)	ENSSCAG00000010011	THSD7B (ENSSCAG00000010047)	CXCR4 (ENSSCAG00000010153)	DARS1 (ENSSCAG00000010155)	MCM6 (ENSSCAG00000010162) ##22	LCT (ENSSCAG00000010173)	UBXN4 (ENSSCAG00000010209)	R3HDM1 (ENSSCAG00000010246)	ZRANB3 (ENSSCAG00000010440)	RAB3GAP1 (ENSSCAG00000010593)	ENSSCAG00000010603	CCNT2 (ENSSCAG00000010609)	ACMSD (ENSSCAG00000010635)	TMEM163 (ENSSCAG00000010647)	MGAT5 (ENSSCAG00000010656)	NCKAP5 (ENSSCAG00000010674)	LYPD1 (ENSSCAG00000010679)	ENSSCAG00000010704	GPR39 (ENSSCAG00000010738)	SLC35F5 (ENSSCAG00000010739)
Zebra finch	MODERN SPECIES	29	ACVR2A (ENSTGUG00000011916)	ZEB2 (ENSTGUG00000011904)	GTDC1 (ENSTGUG00000011902)	ARHGAP15 (ENSTGUG00000011883)	KYNU (ENSTGUG00000011872)	LRP1B (ENSTGUG00000011849)	ENSTGUG00000019269	ENSTGUG00000011843	NXPH2 (ENSTGUG00000011842)	SPOPL (ENSTGUG00000011840)	HNMT (ENSTGUG00000011836)	ENSTGUG00000011829	THSD7B (ENSTGUG00000011824)	CXCR4 (ENSTGUG00000011822)	DARS1 (ENSTGUG00000011810)	MCM6 (ENSTGUG00000011790) ##22	ENSTGUG00000019584	ENSTGUG00000011780	ENSTGUG00000025578	UBXN4 (ENSTGUG00000011772)	R3HDM1 (ENSTGUG00000011750)	ENSTGUG00000011743	RAB3GAP1 (ENSTGUG00000011724)	MAP3K19 (ENSTGUG00000029229)	CCNT2 (ENSTGUG00000011715)	ACMSD (ENSTGUG00000011711)	TMEM163 (ENSTGUG00000011703)	MGAT5 (ENSTGUG00000011688)	NCKAP5 (ENSTGUG00000011682)	LYPD1 (ENSTGUG00000029108)	ENSTGUG00000026176
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000005920	ACVR2A (ENSGFOG00000005925)	ZEB2 (ENSGFOG00000000020)	GTDC1 (ENSGFOG00000000024)	ARHGAP15 (ENSGFOG00000000095)	KYNU (ENSGFOG00000000105)	LRP1B (ENSGFOG00000000311)	ENSGFOG00000002046	NXPH2 (ENSGFOG00000002058)	SPOPL (ENSGFOG00000002067)	HNMT (ENSGFOG00000002079)	ENSGFOG00000002088	THSD7B (ENSGFOG00000002128)	CXCR4 (ENSGFOG00000002308)	DARS1 (ENSGFOG00000002321)	MCM6 (ENSGFOG00000002438) ##22	LCT (ENSGFOG00000003565)	UBXN4 (ENSGFOG00000003676)	ENSGFOG00000003789	ENSGFOG00000003801	ZRANB3 (ENSGFOG00000003813)	RAB3GAP1 (ENSGFOG00000003907)	ENSGFOG00000004421	ENSGFOG00000004427	CCNT2 (ENSGFOG00000004444)	ACMSD (ENSGFOG00000004449)	TMEM163 (ENSGFOG00000004462)	MGAT5 (ENSGFOG00000004477)	NCKAP5 (ENSGFOG00000004514)	LYPD1 (ENSGFOG00000004572)	GPR39 (ENSGFOG00000004584)
Flycatcher	MODERN SPECIES	26	GTDC1 (ENSFALG00000013845)	ARHGAP15 (ENSFALG00000013843)	KYNU (ENSFALG00000013835)	ENSFALG00000027773	LRP1B (ENSFALG00000013809)	ENSFALG00000027337	ENSFALG00000025359	ENSFALG00000026459	NXPH2 (ENSFALG00000014098)	SPOPL (ENSFALG00000025445)	HNMT (ENSFALG00000013782)	ENSFALG00000013777	THSD7B (ENSFALG00000013768)	CXCR4 (ENSFALG00000013763)	DARS1 (ENSFALG00000013752)	MCM6 (ENSFALG00000013743) ##22	LCT (ENSFALG00000013735)	UBXN4 (ENSFALG00000013733)	R3HDM1 (ENSFALG00000013731)	ENSFALG00000013728	RAB3GAP1 (ENSFALG00000013727)	MAP3K19 (ENSFALG00000013726)	CCNT2 (ENSFALG00000013725)	ACMSD (ENSFALG00000013724)	TMEM163 (ENSFALG00000013723)	MGAT5 (ENSFALG00000013722)	NCKAP5 (ENSFALG00000026028)	LYPD1 (ENSFALG00000013717)	ENSFALG00000024409	GPR39 (ENSFALG00000024975)	SLC35F5 (ENSFALG00000013716)
Great tit	MODERN SPECIES	27	ZEB2 (ENSPMJG00000019972)	GTDC1 (ENSPMJG00000019971)	ARHGAP15 (ENSPMJG00000019970)	KYNU (ENSPMJG00000019969)	ENSPMJG00000019968	LRP1B (ENSPMJG00000019966)	ENSPMJG00000019964	ENSPMJG00000019963	NXPH2 (ENSPMJG00000019960)	SPOPL (ENSPMJG00000019959)	HNMT (ENSPMJG00000019956)	ENSPMJG00000019955	THSD7B (ENSPMJG00000019954)	CXCR4 (ENSPMJG00000019953)	DARS1 (ENSPMJG00000019952)	MCM6 (ENSPMJG00000019951) ##22	LCT (ENSPMJG00000019950)	UBXN4 (ENSPMJG00000019949)	R3HDM1 (ENSPMJG00000019947)	ENSPMJG00000019946	RAB3GAP1 (ENSPMJG00000019945)	ENSPMJG00000019943	ENSPMJG00000019942	CCNT2 (ENSPMJG00000019941)	ACMSD (ENSPMJG00000019940)	TMEM163 (ENSPMJG00000019939)	MGAT5 (ENSPMJG00000019938)	NCKAP5 (ENSPMJG00000019937)	LYPD1 (ENSPMJG00000019936)	ENSPMJG00000019935	GPR39 (ENSPMJG00000019934)
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00960000189410	ENSGT00940000160835	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Golden eagle	MODERN SPECIES	22	ZEB2 (ENSACCG00020004610)	GTDC1 (ENSACCG00020004583)	ARHGAP15 (ENSACCG00020004554)	KYNU (ENSACCG00020004543)	LRP1B (ENSACCG00020003781)	ENSACCG00020002322	ENSACCG00020002307	ENSACCG00020002285	NXPH2 (ENSACCG00020002266)	SPOPL (ENSACCG00020002242)	HNMT (ENSACCG00020002230)	ENSACCG00020002205	THSD7B (ENSACCG00020002181)	CXCR4 (ENSACCG00020002142)	DARS1 (ENSACCG00020002123)	MCM6 (ENSACCG00020002049) ##22	LCT (ENSACCG00020001924)	UBXN4 (ENSACCG00020001859)	R3HDM1 (ENSACCG00020001737)	ZRANB3 (ENSACCG00020001664)	RAB3GAP1 (ENSACCG00020001450)	ENSACCG00020001223	CCNT2 (ENSACCG00020001189)	ACMSD (ENSACCG00020001156)	TMEM163 (ENSACCG00020001133)	MGAT5 (ENSACCG00020001112)	NCKAP5 (ENSACCG00020001085)	LYPD1 (ENSACCG00020001065)	GPR39 (ENSACCG00020001056)	SLC35F5 (ENSACCG00020001037)	ACTR3 (ENSACCG00020001018)
Kakapo	MODERN SPECIES	22	ARHGAP15 (ENSSHBG00005017968)	KYNU (ENSSHBG00005017982)	LRP1B (ENSSHBG00005018190)	ENSSHBG00005019612	ENSSHBG00005019617	ENSSHBG00005019621	NXPH2 (ENSSHBG00005019625)	SPOPL (ENSSHBG00005019629)	ENSSHBG00005019633	ENSSHBG00005019634	ENSSHBG00005019637	THSD7B (ENSSHBG00005019648)	ENSSHBG00005019669	CXCR4 (ENSSHBG00005019670)	DARS1 (ENSSHBG00005019676)	MCM6 (ENSSHBG00005019682) ##22	LCT (ENSSHBG00005019692)	UBXN4 (ENSSHBG00005019707)	R3HDM1 (ENSSHBG00005019728)	ZRANB3 (ENSSHBG00005019763)	RAB3GAP1 (ENSSHBG00005019778)	MAP3K19 (ENSSHBG00005019784)	CCNT2 (ENSSHBG00005019788)	ACMSD (ENSSHBG00005019791)	TMEM163 (ENSSHBG00005019795)	MGAT5 (ENSSHBG00005019800)	NCKAP5 (ENSSHBG00005019804)	LYPD1 (ENSSHBG00005019808)	GPR39 (ENSSHBG00005019810)	SLC35F5 (ENSSHBG00005019817)	ACTR3 (ENSSHBG00005000466)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Anatidae	ANCESTRAL SPECIES	37	ENSGT00940000157233	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Duck	MODERN SPECIES	25	ENSAPLG00000006787	TNFAIP6 (ENSAPLG00000006901)	RIF1 (ENSAPLG00000007092)	ENSAPLG00000021162	ENSAPLG00000029124	ENSAPLG00000007227	ARL5A (ENSAPLG00000022181)	CACNB4 (ENSAPLG00000009361)	STAM2 (ENSAPLG00000009755)	FMNL2 (ENSAPLG00000009989)	PRPF40A (ENSAPLG00000010600)	GALNT13 (ENSAPLG00000011024)	KCNJ3 (ENSAPLG00000011864)	CXCR4 (ENSAPLG00000001879)	DARS1 (ENSAPLG00000001845)	MCM6 (ENSAPLG00000016365) ##22	LCT (ENSAPLG00000016089)	ENSAPLG00000030618	ENSAPLG00000026872	R3HDM1 (ENSAPLG00000015231)	ZRANB3 (ENSAPLG00000014815)	RAB3GAP1 (ENSAPLG00000014149)	MAP3K19 (ENSAPLG00000029463)	CCNT2 (ENSAPLG00000013992)	ACMSD (ENSAPLG00000013859)	TMEM163 (ENSAPLG00000024555)	MGAT5 (ENSAPLG00000013548)	NCKAP5 (ENSAPLG00000013464)	GPR39 (ENSAPLG00000013436)	SLC35F5 (ENSAPLG00000013162)	ACTR3 (ENSAPLG00000012845)
Pink-footed goose	MODERN SPECIES	25	ZEB2 (ENSABRG00000008234)	GTDC1 (ENSABRG00000008212)	ARHGAP15 (ENSABRG00000008179)	KYNU (ENSABRG00000008161)	LRP1B (ENSABRG00000007918)	ENSABRG00000007871	ENSABRG00000007865	ENSABRG00000007851	NXPH2 (ENSABRG00000007844)	SPOPL (ENSABRG00000007833)	HNMT (ENSABRG00000007808)	ENSABRG00000007790	THSD7B (ENSABRG00000007388)	CXCR4 (ENSABRG00000007346)	DARS1 (ENSABRG00000006410)	MCM6 (ENSABRG00000006023) ##22	LCT (ENSABRG00000005980)	ENSABRG00000005965	ENSABRG00000005951	R3HDM1 (ENSABRG00000005348)	ZRANB3 (ENSABRG00000005082)	RAB3GAP1 (ENSABRG00000003654)	ENSABRG00000003526	ENSABRG00000003516	CCNT2 (ENSABRG00000003228)	ACMSD (ENSABRG00000003121)	TMEM163 (ENSABRG00000003073)	MGAT5 (ENSABRG00000002157)	NCKAP5 (ENSABRG00000001938)	ENSABRG00000001884	GPR39 (ENSABRG00000001844)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00940000157233	ENSGT00950000183208.A.c.a.k	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170.c	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.b	ENSGT00390000005949	ENSGT00940000155065
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a.k	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170.c	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.b	ENSGT00390000005949	ENSGT00940000155065
Chicken	MODERN SPECIES	36	ZEB2 (ENSGALG00010009461)	GTDC1 (ENSGALG00010009435)	ARHGAP15 (ENSGALG00010009373)	KYNU (ENSGALG00010009338)	ENSGALG00010009269	ENSGALG00010011353	ENSGALG00010009257	ENSGALG00010009224	NXPH2 (ENSGALG00010009212)	SPOPL (ENSGALG00010009172)	HNMT (ENSGALG00010009147)	ENSGALG00010009112	THSD7B (ENSGALG00010009106)	CXCR4 (ENSGALG00010009099)	DARS (ENSGALG00010009094)	MCM6 (ENSGALG00010019843) ##22	LCT (ENSGALG00010019823)	UBXN4 (ENSGALG00010019811)	R3HDM1 (ENSGALG00010019786)	ZRANB3 (ENSGALG00010019717)	RAB3GAP1 (ENSGALG00010019643)	MAP3K19 (ENSGALG00010019600)	CCNT2 (ENSGALG00010019587)	ACMSD (ENSGALG00010019550)	TMEM163 (ENSGALG00010019474)	MGAT5 (ENSGALG00010019461)	NCKAP5 (ENSGALG00010019443)	LYPD1 (ENSGALG00010019423)	GPR39 (ENSGALG00010019416)	SLC35F5 (ENSGALG00010019398)	ACTR3 (ENSGALG00010019319)
Turkey	MODERN SPECIES	27	ENSMGAG00000012403	ENSMGAG00000021759	ENSMGAG00000018410	NCKAP5 (ENSMGAG00000012414)	ENSMGAG00000012429	ENSMGAG00000012420	ENSMGAG00000022328	ACMSD (ENSMGAG00000012432)	ENSMGAG00000012454	RAB3GAP1 (ENSMGAG00000012443)	ENSMGAG00000015963	ENSMGAG00000012437	ENSMGAG00000022859	ENSMGAG00000018705	R3HDM1 (ENSMGAG00000012461)	MCM6 (ENSMGAG00000020436) ##22	ENSMGAG00000012487	ENSMGAG00000012483	ENSMGAG00000022461	DARS1 (ENSMGAG00000012501)	ENSMGAG00000015970	HNMT (ENSMGAG00000012535)	ENSMGAG00000019800	ENSMGAG00000012549	ENSMGAG00000012543	ENSMGAG00000012558	ENSMGAG00000017911	ENSMGAG00000018144	ENSMGAG00000020828	ENSMGAG00000022989	ENSMGAG00000022357
Japanese quail	MODERN SPECIES	25	ACVR1C (ENSCJPG00005020494)	ACVR1 (ENSCJPG00005020493)	KYNU (ENSCJPG00005020492)	ENSCJPG00005020490	LRP1B (ENSCJPG00005020489)	ENSCJPG00005020487	ENSCJPG00005020483	ENSCJPG00005020482	NXPH2 (ENSCJPG00005020480)	SPOPL (ENSCJPG00005020479)	HNMT (ENSCJPG00005020477)	ENSCJPG00005020476	THSD7B (ENSCJPG00005020474)	CXCR4 (ENSCJPG00005020472)	DARS1 (ENSCJPG00005020471)	MCM6 (ENSCJPG00005020470) ##22	LCT (ENSCJPG00005020468)	UBXN4 (ENSCJPG00005020464)	R3HDM1 (ENSCJPG00005020461)	ZRANB3 (ENSCJPG00005020460)	RAB3GAP1 (ENSCJPG00005020459)	MAP3K19 (ENSCJPG00005020458)	CCNT2 (ENSCJPG00005020457)	ACMSD (ENSCJPG00005020456)	TMEM163 (ENSCJPG00005020455)	MGAT5 (ENSCJPG00005020454)	NCKAP5 (ENSCJPG00005020452)	ENSCJPG00005020450	GPR39 (ENSCJPG00005020449)	SLC35F5 (ENSCJPG00005020446)	ACTR3 (ENSCJPG00005020443)
African ostrich	MODERN SPECIES	695	ACVR2A (ENSSCUG00000013989)	ZEB2 (ENSSCUG00000014041)	GTDC1 (ENSSCUG00000014063)	ARHGAP15 (ENSSCUG00000014071)	KYNU (ENSSCUG00000014075)	ENSSCUG00000014086	LRP1B (ENSSCUG00000014116)	ENSSCUG00000014175	NXPH2 (ENSSCUG00000014198)	SPOPL (ENSSCUG00000014202)	HNMT (ENSSCUG00000014206)	ENSSCUG00000014208	THSD7B (ENSSCUG00000014244)	CXCR4 (ENSSCUG00000014286)	DARS1 (ENSSCUG00000014287)	MCM6 (ENSSCUG00000014301) ##22	LCT (ENSSCUG00000014317)	UBXN4 (ENSSCUG00000014319)	R3HDM1 (ENSSCUG00000014332)	ZRANB3 (ENSSCUG00000014344)	RAB3GAP1 (ENSSCUG00000014387)	MAP3K19 (ENSSCUG00000014515)	CCNT2 (ENSSCUG00000014522)	ACMSD (ENSSCUG00000014527)	TMEM163 (ENSSCUG00000014531)	MGAT5 (ENSSCUG00000014532)
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005007562	ARHGAP15 (ENSCPRG00005007510)	ENSCPRG00005007469	KYNU (ENSCPRG00005007454)	LRP1B (ENSCPRG00005005815)	ENSCPRG00005005002	NXPH2 (ENSCPRG00005004987)	SPOPL (ENSCPRG00005004973)	ENSCPRG00005004971	HNMT (ENSCPRG00005004963)	ENSCPRG00005004950	ENSCPRG00005004946	THSD7B (ENSCPRG00005004920)	CXCR4 (ENSCPRG00005004904)	DARS1 (ENSCPRG00005004894)	MCM6 (ENSCPRG00005004875) ##22	ENSCPRG00005004869	ENSCPRG00005004863	ENSCPRG00005004844	ENSCPRG00005004804	R3HDM1 (ENSCPRG00005004542)	ZRANB3 (ENSCPRG00005004364)	RAB3GAP1 (ENSCPRG00005003872)	ENSCPRG00005003797	CCNT2 (ENSCPRG00005003794)	ENSCPRG00005003790	ACMSD (ENSCPRG00005003785)	TMEM163 (ENSCPRG00005003777)	MGAT5 (ENSCPRG00005003744)	ENSCPRG00005003730	NCKAP5 (ENSCPRG00005003668)
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00390000016542.j	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Emydidae	ANCESTRAL SPECIES	4	ENSGT00390000016542.j	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
painted turtle	MODERN SPECIES	13	ENSCPBG00000010231	CCNT2 (ENSCPBG00000010223)	ACMSD (ENSCPBG00000010217)	TMEM163 (ENSCPBG00000010214)	MGAT5 (ENSCPBG00000010211)	NCKAP5 (ENSCPBG00000010195)	LYPD1 (ENSCPBG00000010186)	ENSCPBG00000010185	GPR39 (ENSCPBG00000010183)	SLC35F5 (ENSCPBG00000010179)	ENSCPBG00000010175	ACTR3 (ENSCPBG00000010170)	THSD7B (ENSCPBG00000010150)	CXCR4 (ENSCPBG00000010145)	DARS1 (ENSCPBG00000010133)	MCM6 (ENSCPBG00000010128) ##22	LCT (ENSCPBG00000010124)	UBXN4 (ENSCPBG00000010085)	ENSCPBG00000010073	R3HDM1 (ENSCPBG00000009645)	MS4A12 (ENSCPBG00000009604)	TCN1 (ENSCPBG00000009594)	CBLIF (ENSCPBG00000009582)	MRPL16 (ENSCPBG00000009578)	ENSCPBG00000009572	STX3 (ENSCPBG00000009554)	OSBP (ENSCPBG00000009513)	ENSCPBG00000009500	ACY3 (ENSCPBG00000009496)	ENSCPBG00000009492	CABP4 (ENSCPBG00000009488)
Three-toed box turtle	MODERN SPECIES	25	ACVR2A (ENSTMTG00000013661)	ENSTMTG00000013650	ZEB2 (ENSTMTG00000013632)	GTDC1 (ENSTMTG00000013582)	ARHGAP15 (ENSTMTG00000013531)	KYNU (ENSTMTG00000013497)	LRP1B (ENSTMTG00000013281)	ENSTMTG00000013165	ENSTMTG00000013143	NXPH2 (ENSTMTG00000013135)	SPOPL (ENSTMTG00000013108)	HNMT (ENSTMTG00000013096)	THSD7B (ENSTMTG00000012697)	CXCR4 (ENSTMTG00000012638)	DARS1 (ENSTMTG00000012624)	MCM6 (ENSTMTG00000014960) ##22	ENSTMTG00000014910	ENSTMTG00000014903	ENSTMTG00000014891	ENSTMTG00000014877	R3HDM1 (ENSTMTG00000014805)	ZRANB3 (ENSTMTG00000014762)	RAB3GAP1 (ENSTMTG00000014691)	MAP3K19 (ENSTMTG00000014649)	CCNT2 (ENSTMTG00000014231)	ACMSD (ENSTMTG00000014161)	TMEM163 (ENSTMTG00000014144)	MGAT5 (ENSTMTG00000014128)	NCKAP5 (ENSTMTG00000014099)	LYPD1 (ENSTMTG00000014084)	ENSTMTG00000014075
Testudinidae	ANCESTRAL SPECIES	8	ENSGT00390000016542.j	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631.g	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00950000185980	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Goode s thornscrub tortoise	MODERN SPECIES	2	ACVR2A (ENSGEVG00005020977)	ZEB2 (ENSGEVG00005020983)	GTDC1 (ENSGEVG00005020989)	ARHGAP15 (ENSGEVG00005020993)	KYNU (ENSGEVG00005021006)	LRP1B (ENSGEVG00005021016)	ENSGEVG00005021033	ENSGEVG00005021039	ENSGEVG00005021042	NXPH2 (ENSGEVG00005021046)	SPOPL (ENSGEVG00005021047)	HNMT (ENSGEVG00005021050)	THSD7B (ENSGEVG00005021056)	CXCR4 (ENSGEVG00005021063)	DARS1 (ENSGEVG00005021065)	MCM6 (ENSGEVG00005021067) ##22	ENSGEVG00005021068	ENSGEVG00005021069	ENSGEVG00005021070	UBXN4 (ENSGEVG00005021073)	R3HDM1 (ENSGEVG00005021076)	ZRANB3 (ENSGEVG00005021082)	RAB3GAP1 (ENSGEVG00005021086)	ENSGEVG00005021095	ENSGEVG00005021097	ENSGEVG00005021102	ACMSD (ENSGEVG00005021106)	TMEM163 (ENSGEVG00005021110)	ENSGEVG00005021113	MGAT5 (ENSGEVG00005021116)	NCKAP5 (ENSGEVG00005021121)
Abingdon island giant tortoise	MODERN SPECIES	70														CXCR4 (ENSCABG00000013608)	DARS1 (ENSCABG00000013616)	MCM6 (ENSCABG00000013672) ##22	ENSCABG00000013674	ENSCABG00000013676	ENSCABG00000013684	R3HDM1 (ENSCABG00000013713)	ZRANB3 (ENSCABG00000013725)	ENSCABG00000013727	RAB3GAP1 (ENSCABG00000013728)	ENSCABG00000014592	ENSCABG00000014594	ACMSD (ENSCABG00000014598)	TMEM163 (ENSCABG00000014601)	ENSCABG00000014604	MGAT5 (ENSCABG00000014607)
Chinese turtle	MODERN SPECIES	624		FAM83D (ENSPSIG00000005557)	PPP1R16B (ENSPSIG00000005562)	ENSPSIG00000000675	ACTR5 (ENSPSIG00000005668)	ARHGAP40 (ENSPSIG00000005793)	SLC32A1 (ENSPSIG00000005824)	LRP1B (ENSPSIG00000005843)	NXPH2 (ENSPSIG00000007660)	SPOPL (ENSPSIG00000007666)	ENSPSIG00000007862	HNMT (ENSPSIG00000007919)	THSD7B (ENSPSIG00000007975)	CXCR4 (ENSPSIG00000008843)	DARS1 (ENSPSIG00000008849)	MCM6 (ENSPSIG00000009764) ##22	LCT (ENSPSIG00000010785)	ENSPSIG00000011484	R3HDM1 (ENSPSIG00000012915)	ZRANB3 (ENSPSIG00000005377)	RAB3GAP1 (ENSPSIG00000005549)	MAP3K19 (ENSPSIG00000008213)	CCNT2 (ENSPSIG00000008314)	TMEM163 (ENSPSIG00000008394)	ACMSD (ENSPSIG00000008832)	MGAT5 (ENSPSIG00000010325)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215
Episquamata	ANCESTRAL SPECIES		ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b.f
Laterata	ANCESTRAL SPECIES	2	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01100000263518.A.a.b.f	ENSGT01030000235139	ENSGT00390000002215
Common wall lizard	MODERN SPECIES		GTDC1 (ENSPMRG00000007431)	ARHGAP15 (ENSPMRG00000007392)	ENSPMRG00000007371	ENSPMRG00000007325	ENSPMRG00000007298	LRP1B (ENSPMRG00000007211)	ENSPMRG00000007042	ENSPMRG00000006988	SPOPL (ENSPMRG00000006977)	ENSPMRG00000006970	HNMT (ENSPMRG00000006961)	ENSPMRG00000006948	THSD7B (ENSPMRG00000006906)	CXCR4 (ENSPMRG00000006895)	DARS1 (ENSPMRG00000006884)	MCM6 (ENSPMRG00000006870) ##22	LCT (ENSPMRG00000006858)	UBXN4 (ENSPMRG00000006851)	R3HDM1 (ENSPMRG00000006817)	ZRANB3 (ENSPMRG00000006784)	RAB3GAP1 (ENSPMRG00000006767)	MAP3K19 (ENSPMRG00000006759)	CCNT2 (ENSPMRG00000006745)	ACMSD (ENSPMRG00000006733)	ENSPMRG00000006728	ENSPMRG00000006724	TMEM163 (ENSPMRG00000006721)	MGAT5 (ENSPMRG00000006713)	NCKAP5 (ENSPMRG00000006694)	LYPD1 (ENSPMRG00000006685)	GPR39 (ENSPMRG00000006679)
Argentine black and white tegu	MODERN SPECIES	27														CXCR4 (ENSSMRG00000014468)	DARS1 (ENSSMRG00000014466)	MCM6 (ENSSMRG00000014465) ##22	ENSSMRG00000014463	ENSSMRG00000014462	ENSSMRG00000014461	ENSSMRG00000014459	R3HDM1 (ENSSMRG00000014448)	ZRANB3 (ENSSMRG00000014421)	RAB3GAP1 (ENSSMRG00000014420)	ENSSMRG00000014419	ENSSMRG00000014418	ENSSMRG00000014417	CCNT2 (ENSSMRG00000014415)	ACMSD (ENSSMRG00000014414)	ENSSMRG00000014413	TMEM163 (ENSSMRG00000014412)	MGAT5 (ENSSMRG00000014410)
Toxicofera	ANCESTRAL SPECIES	10	ENSGT00950000183208.A.c.a	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Elapidae	ANCESTRAL SPECIES		ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00940000181338	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324.x	ENSGT00940000155324.w	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00940000155759.r.b	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000157233	ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324.x	ENSGT00940000155324.w	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT01030000235139
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000157233	ENSGT00950000183208.A.c.a.h	ENSGT00390000006631.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00940000166779	ENSGT00940000160835	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324.x	ENSGT00940000155324.w	ENSGT00940000156457	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759.r.a	ENSGT00940000155759.r.b	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b
Mainland tiger snake	MODERN SPECIES	12														CXCR4 (ENSNSUG00000007680)	DARS1 (ENSNSUG00000007682)	MCM6 (ENSNSUG00000007686) ##22	ENSNSUG00000007691	ENSNSUG00000007703	ENSNSUG00000007705	R3HDM1 (ENSNSUG00000007707)	ZRANB3 (ENSNSUG00000007861)	ENSNSUG00000007862	RAB3GAP1 (ENSNSUG00000007864)	ENSNSUG00000009065	ENSNSUG00000009066	ENSNSUG00000009067	ACMSD (ENSNSUG00000009068)	TMEM163 (ENSNSUG00000009070)	MGAT5 (ENSNSUG00000009071)	NCKAP5 (ENSNSUG00000009074)	LYPD1 (ENSNSUG00000009129)
Eastern brown snake	MODERN SPECIES	71												THSD7B (ENSPTXG00000012661)	ENSPTXG00000012655	CXCR4 (ENSPTXG00000012653)	DARS1 (ENSPTXG00000012651)	MCM6 (ENSPTXG00000011838) ##22	ENSPTXG00000011828	ENSPTXG00000011826	ENSPTXG00000011824	ENSPTXG00000011823	R3HDM1 (ENSPTXG00000011817)	ZRANB3 (ENSPTXG00000011811)	RAB3GAP1 (ENSPTXG00000011810)	ENSPTXG00000011809	CCNT2 (ENSPTXG00000011808)	ACMSD (ENSPTXG00000011807)	TMEM163 (ENSPTXG00000011806)	MGAT5 (ENSPTXG00000011804)	NCKAP5 (ENSPTXG00000011606)	ENSPTXG00000011602	LYPD1 (ENSPTXG00000011601)
Blue-lipped sea krait	MODERN SPECIES	6950															DARS1 (ENSLLTG00000012957)	MCM6 (ENSLLTG00000012964) ##22	SLC18A2 (ENSLLTG00000012976)
Indian cobra	MODERN SPECIES		ZEB2 (ENSNNAG00000013202)	ENSNNAG00000013247	GTDC1 (ENSNNAG00000013283)	ARHGAP15 (ENSNNAG00000013349)	ENSNNAG00000013365	KYNU (ENSNNAG00000013382)	LRP1B (ENSNNAG00000013416)	ENSNNAG00000013673	ENSNNAG00000013733	NXPH2 (ENSNNAG00000013743)	SPOPL (ENSNNAG00000013754)	HNMT (ENSNNAG00000013815)	THSD7B (ENSNNAG00000013843)	CXCR4 (ENSNNAG00000014170)	DARS1 (ENSNNAG00000014185)	MCM6 (ENSNNAG00000014241) ##22	LCT (ENSNNAG00000014367)	ENSNNAG00000014502	R3HDM1 (ENSNNAG00000014546)	ENSNNAG00000014910	RAB3GAP1 (ENSNNAG00000015078)	ENSNNAG00000015109	ENSNNAG00000015126	ENSNNAG00000015156	ENSNNAG00000015163	ENSNNAG00000015191	ENSNNAG00000015219	TMEM163 (ENSNNAG00000015249)	MGAT5 (ENSNNAG00000015375)	ENSNNAG00000015394	ENSNNAG00000015404
Lizard	MODERN SPECIES		ARHGAP15 (ENSACAG00000003110)	KYNU (ENSACAG00000003164)	ENSACAG00000038880	LRP1B (ENSACAG00000003221)	ENSACAG00000041166	ENSACAG00000003521	ENSACAG00000042491	NXPH2 (ENSACAG00000000334)	SPOPL (ENSACAG00000000338)	HNMT (ENSACAG00000037643)	ENSACAG00000029670	THSD7B (ENSACAG00000000545)	ENSACAG00000039047	CXCR4 (ENSACAG00000000795)	DARS1 (ENSACAG00000000804)	MCM6 (ENSACAG00000001072) ##22	LCT (ENSACAG00000001426)	UBXN4 (ENSACAG00000001575)	ENSACAG00000043236	ENSACAG00000042155	R3HDM1 (ENSACAG00000001676)	ENSACAG00000044390	ZRANB3 (ENSACAG00000001934)	RAB3GAP1 (ENSACAG00000002073)	CCNT2 (ENSACAG00000002335)	ENSACAG00000038786	ACMSD (ENSACAG00000042959)	TMEM163 (ENSACAG00000002453)	MGAT5 (ENSACAG00000002486)	ENSACAG00000012718	ENSACAG00000012838
Mammalia	ANCESTRAL SPECIES	6	ENSGT00940000157233	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Theria	ANCESTRAL SPECIES	5	ENSGT00940000157233	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000157233	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01050000244986.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01050000244986.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Eulipotyphla	ANCESTRAL SPECIES	1447															ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22
Hedgehog	MODERN SPECIES	7901																MCM6 (ENSEEUG00000002884) ##22
Common shrew	MODERN SPECIES	5921															DARS1 (ENSSARG00000005046)	MCM6 (ENSSARG00000004992) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00960000193288	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Suina	ANCESTRAL SPECIES	48	ENSGT00390000016542	ENSGT00940000157233	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Pig	MODERN SPECIES	6	ENSSSCG00000045622	KYNU (ENSSSCG00000015673)	ENSSSCG00000050181	LRP1B (ENSSSCG00000023746)	ENSSSCG00000043342	NXPH2 (ENSSSCG00000040715)	SPOPL (ENSSSCG00000032198)	ENSSSCG00000041316	ENSSSCG00000046078	HNMT (ENSSSCG00000035195)	THSD7B (ENSSSCG00000040172)	ENSSSCG00000042807	ENSSSCG00000043527	CXCR4 (ENSSSCG00000039416)	DARS1 (ENSSSCG00000015689)	MCM6 (ENSSSCG00000035564) ##22	ENSSSCG00000051964	ENSSSCG00000015691	ENSSSCG00000053961	ENSSSCG00000030013	ENSSSCG00000054388	UBXN4 (ENSSSCG00000015690)	R3HDM1 (ENSSSCG00000015692)	ZRANB3 (ENSSSCG00000015694)	ENSSSCG00000039294	RAB3GAP1 (ENSSSCG00000015695)	ENSSSCG00000033241	MAP3K19 (ENSSSCG00000015696)	CCNT2 (ENSSSCG00000015697)	ACMSD (ENSSSCG00000015699)	ENSSSCG00000045091
Chacoan peccary	MODERN SPECIES	130	ACVR2A (ENSCWAG00000018473)	ENSCWAG00000018510	ZEB2 (ENSCWAG00000018538)	ENSCWAG00000018682	GTDC1 (ENSCWAG00000018711)	ARHGAP15 (ENSCWAG00000018864)	KYNU (ENSCWAG00000018949)	LRP1B (ENSCWAG00000019047)	NXPH2 (ENSCWAG00000019401)	SPOPL (ENSCWAG00000019425)	HNMT (ENSCWAG00000019443)	THSD7B (ENSCWAG00000019475)	ENSCWAG00000019657	CXCR4 (ENSCWAG00000019662)	DARS1 (ENSCWAG00000019676)	MCM6 (ENSCWAG00000019730) ##22	ENSCWAG00000019773	ENSCWAG00000019811	ENSCWAG00000019832	R3HDM1 (ENSCWAG00000019873)	ZRANB3 (ENSCWAG00000020165)	ENSCWAG00000020208	RAB3GAP1 (ENSCWAG00000020244)	MAP3K19 (ENSCWAG00000020492)	CCNT2 (ENSCWAG00000020610)	ACMSD (ENSCWAG00000020650)	TMEM163 (ENSCWAG00000020690)	ENSCWAG00000020698	MGAT5 (ENSCWAG00000020711)	NCKAP5 (ENSCWAG00000020738)	LYPD1 (ENSCWAG00000020808)
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Camelidae	ANCESTRAL SPECIES	16	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Arabian camel	MODERN SPECIES	31	ACVR2A (ENSCDRG00005021318)	ENSCDRG00005021315	ENSCDRG00005021311	ZEB2 (ENSCDRG00005021107)	GTDC1 (ENSCDRG00005021037)	ARHGAP15 (ENSCDRG00005021017)	KYNU (ENSCDRG00005021006)	LRP1B (ENSCDRG00005019331)	NXPH2 (ENSCDRG00005019171)	ENSCDRG00005019157	SPOPL (ENSCDRG00005019127)	HNMT (ENSCDRG00005019111)	THSD7B (ENSCDRG00005018936)	CXCR4 (ENSCDRG00005018891)	DARS1 (ENSCDRG00005018847)	MCM6 (ENSCDRG00005018797) ##22	LCT (ENSCDRG00005018741)	UBXN4 (ENSCDRG00005018623)	R3HDM1 (ENSCDRG00005018316)	ENSCDRG00005018272	ZRANB3 (ENSCDRG00005018185)	RAB3GAP1 (ENSCDRG00005017183)	MAP3K19 (ENSCDRG00005016388)	CCNT2 (ENSCDRG00005016294)	ACMSD (ENSCDRG00005016206)	TMEM163 (ENSCDRG00005016133)	MGAT5 (ENSCDRG00005016077)	ENSCDRG00005016005	NCKAP5 (ENSCDRG00005015750)	LYPD1 (ENSCDRG00005015681)	ENSCDRG00005015665
Alpaca	MODERN SPECIES	623															DARS1 (ENSVPAG00000007350)	MCM6 (ENSVPAG00000007346) ##22	LCT (ENSVPAG00000007339)	UBXN4 (ENSVPAG00000007336)	R3HDM1 (ENSVPAG00000007333)
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Yarkand deer	MODERN SPECIES	26	ZEB2 (ENSCHYG00000009791)	GTDC1 (ENSCHYG00000010152)	ARHGAP15 (ENSCHYG00000010616)	KYNU (ENSCHYG00000010703)	LRP1B (ENSCHYG00000010870)	ENSCHYG00000011576	NXPH2 (ENSCHYG00000011648)	SPOPL (ENSCHYG00000011681)	ENSCHYG00000011854	HNMT (ENSCHYG00000011885)	THSD7B (ENSCHYG00000011983)	ENSCHYG00000012320	ENSCHYG00000012343	CXCR4 (ENSCHYG00000012367)	DARS1 (ENSCHYG00000012423)	MCM6 (ENSCHYG00000012811) ##22	LCT (ENSCHYG00000012888)	UBXN4 (ENSCHYG00000013030)	R3HDM1 (ENSCHYG00000013148)	ZRANB3 (ENSCHYG00000015153)	ENSCHYG00000015314	RAB3GAP1 (ENSCHYG00000015371)	ENSCHYG00000015893	MAP3K19 (ENSCHYG00000016167)	CCNT2 (ENSCHYG00000017100)	ACMSD (ENSCHYG00000017316)	TMEM163 (ENSCHYG00000017497)	MGAT5 (ENSCHYG00000017596)	ENSCHYG00000018252	NCKAP5 (ENSCHYG00000018364)	ENSCHYG00000018824
Percora_a	ANCESTRAL SPECIES	5	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00390000017443.k.a	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Siberian musk deer	MODERN SPECIES	346	ARHGAP15 (ENSMMSG00000019673)	KYNU (ENSMMSG00000019754)	ENSMMSG00000019836	LRP1B (ENSMMSG00000019882)	ENSMMSG00000020194	ENSMMSG00000020212	ENSMMSG00000020234	ENSMMSG00000020252	NXPH2 (ENSMMSG00000020261)	SPOPL (ENSMMSG00000020288)	HNMT (ENSMMSG00000020352)	ENSMMSG00000020372	THSD7B (ENSMMSG00000020400)	CXCR4 (ENSMMSG00000020562)	DARS1 (ENSMMSG00000020589)	MCM6 (ENSMMSG00000020619) ##22	LCT (ENSMMSG00000020663)	UBXN4 (ENSMMSG00000020749)	R3HDM1 (ENSMMSG00000020848)	ZRANB3 (ENSMMSG00000021800)	ENSMMSG00000021832	RAB3GAP1 (ENSMMSG00000021868)	MAP3K19 (ENSMMSG00000022186)	CCNT2 (ENSMMSG00000022579)	ACMSD (ENSMMSG00000022603)
Bovidae	ANCESTRAL SPECIES	8	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00390000017443.k.a	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Caprinae	ANCESTRAL SPECIES	5	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00940000153272.a.b.z.a.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00390000017443.k.a	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Rambouillet Sheep	MODERN SPECIES	11	ACVR2A (ENSOARG00020025027)	ZEB2 (ENSOARG00020025087)	ARHGAP15 (ENSOARG00020025262)	KYNU (ENSOARG00020005939)	LRP1B (ENSOARG00020006148)	ENSOARG00020011176	NXPH2 (ENSOARG00020011226)	SPOPL (ENSOARG00020011256)	ENSOARG00020011354	HNMT (ENSOARG00020011495)	ENSOARG00020011562	THSD7B (ENSOARG00020011585)	ENSOARG00020012007	CXCR4 (ENSOARG00020012040)	DARS1 (ENSOARG00020012080)	MCM6 (ENSOARG00020012369) ##22	LCT (ENSOARG00020012566)	R3HDM1 (ENSOARG00020012873)	ZRANB3 (ENSOARG00020015121)	RAB3GAP1 (ENSOARG00020015640)	ENSOARG00020016565	CCNT2 (ENSOARG00020017712)	ACMSD (ENSOARG00020017792)	ENSOARG00020017892	TMEM163 (ENSOARG00020017931)	MGAT5 (ENSOARG00020018034)	LYPD1 (ENSOARG00020019803)	ENSOARG00020019827	ENSOARG00020019862	SLC35F5 (ENSOARG00020019975)	ACTR3 (ENSOARG00020020404)
Goat	MODERN SPECIES	11	GTDC1 (ENSCHIG00000022649)	ARHGAP15 (ENSCHIG00000014079)	ENSCHIG00000024301	KYNU (ENSCHIG00000025717)	ENSCHIG00000024840	LRP1B (ENSCHIG00000012788)	ENSCHIG00000015461	ENSCHIG00000024934	NXPH2 (ENSCHIG00000014059)	SPOPL (ENSCHIG00000020853)	HNMT (ENSCHIG00000010212)	ENSCHIG00000004822	THSD7B (ENSCHIG00000014355)	CXCR4 (ENSCHIG00000013798)	DARS1 (ENSCHIG00000011050)	MCM6 (ENSCHIG00000017476) ##22	LCT (ENSCHIG00000002692)	UBXN4 (ENSCHIG00000023638)	R3HDM1 (ENSCHIG00000020851)	ZRANB3 (ENSCHIG00000025781)	ENSCHIG00000009928	RAB3GAP1 (ENSCHIG00000005692)	MAP3K19 (ENSCHIG00000015546)	CCNT2 (ENSCHIG00000016658)	ACMSD (ENSCHIG00000019884)	ENSCHIG00000009827	ENSCHIG00000013148	TMEM163 (ENSCHIG00000025354)	MGAT5 (ENSCHIG00000027215)	NCKAP5 (ENSCHIG00000026101)	LYPD1 (ENSCHIG00000019109)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00510000047245.w.a.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000153272.a.b.z.a.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00950000183123.g.a.a.b.fb.b	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Bos	ANCESTRAL SPECIES	6	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000153272.a.b.z.a.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00950000183123.g.a.a.b.fb.b	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000154940.fb.b	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000153272.a.b.z.a.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00950000183123.g.a.a.b.fb.b	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263480.a.a.b.b.b.a.a.a.b.a.a.b.b.a.a.b.b.a.b.a	ENSGT01100000263480.a.a.b.a.b.b.b.a.a.a.a.b	ENSGT00530000063607.b	ENSGT00390000002215
Domestic yak	MODERN SPECIES	11	KYNU (ENSBGRG00000004206)	ENSBGRG00000004192	LRP1B (ENSBGRG00000001782)	ENSBGRG00000001517	NXPH2 (ENSBGRG00000001512)	SPOPL (ENSBGRG00000001482)	ENSBGRG00000001471	ENSBGRG00000001465	ENSBGRG00000001460	HNMT (ENSBGRG00000001443)	ENSBGRG00000001431	THSD7B (ENSBGRG00000001374)	ENSBGRG00000001353	CXCR4 (ENSBGRG00000001345)	DARS1 (ENSBGRG00000001296)	MCM6 (ENSBGRG00000001270) ##22	LCT (ENSBGRG00000001231)	UBXN4 (ENSBGRG00000001196)	R3HDM1 (ENSBGRG00000000982)	ZRANB3 (ENSBGRG00000000920)	ENSBGRG00000000905	RAB3GAP1 (ENSBGRG00000000816)	MAP3K19 (ENSBGRG00000000787)	CCNT2 (ENSBGRG00000000712)	ACMSD (ENSBGRG00000000653)	TMEM163 (ENSBGRG00000000610)	MGAT5 (ENSBGRG00000000528)	ENSBGRG00000000496	ENSBGRG00000000489	ENSBGRG00000000483	ENSBGRG00000000477
Wild yak	MODERN SPECIES	1099															DARS1 (ENSBMUG00000005489)	MCM6 (ENSBMUG00000005454) ##22	LCT (ENSBMUG00000005438)	UBXN4 (ENSBMUG00000005427)	R3HDM1 (ENSBMUG00000005365)	ZRANB3 (ENSBMUG00000005275)	ENSBMUG00000005223	RAB3GAP1 (ENSBMUG00000005189)	MAP3K19 (ENSBMUG00000005112)	CCNT2 (ENSBMUG00000005057)	ACMSD (ENSBMUG00000005007)	TMEM163 (ENSBMUG00000004912)	MGAT5 (ENSBMUG00000004831)
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000154276.jb.a.a.a.a.a.a.b.a.a.b.b	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00940000158921.f.a	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00510000047559.d.a	ENSGT00940000159262	ENSGT00950000183123.g.a.a.b.fb.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT01100000263481.n.a.b.b.b.b	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Hybrid Bos Indicus	MODERN SPECIES	11	ARHGAP15 (ENSBIXG00005016328)	KYNU (ENSBIXG00005002592)	ENSBIXG00005016245	LRP1B (ENSBIXG00005015953)	ENSBIXG00005015364	ENSBIXG00005015329	NXPH2 (ENSBIXG00005015323)	ENSBIXG00005015307	SPOPL (ENSBIXG00005015294)	HNMT (ENSBIXG00005015241)	ENSBIXG00005015215	THSD7B (ENSBIXG00005015144)	ENSBIXG00005015049	CXCR4 (ENSBIXG00005015020)	DARS1 (ENSBIXG00005002198)	MCM6 (ENSBIXG00005002156) ##22	LCT (ENSBIXG00005014879)	UBXN4 (ENSBIXG00005014833)	R3HDM1 (ENSBIXG00005002094)	ZRANB3 (ENSBIXG00005014603)	RAB3GAP1 (ENSBIXG00005001936)	ENSBIXG00005014335	MAP3K19 (ENSBIXG00005014314)	CCNT2 (ENSBIXG00005014240)	ACMSD (ENSBIXG00005014175)	TMEM163 (ENSBIXG00005001832)	MGAT5 (ENSBIXG00005014057)	ENSBIXG00005014012	ENSBIXG00005013944	NCKAP5 (ENSBIXG00005013828)	ENSBIXG00005013529
Cow	MODERN SPECIES	11	KYNU (ENSBTAG00000032277)	ENSBTAG00000054433	ENSBTAG00000050185	LRP1B (ENSBTAG00000024632)	ENSBTAG00000017629	NXPH2 (ENSBTAG00000018147)	SPOPL (ENSBTAG00000013455)	ENSBTAG00000001627	ENSBTAG00000050067	HNMT (ENSBTAG00000014432)	ENSBTAG00000039437	THSD7B (ENSBTAG00000044055)	ENSBTAG00000021755	CXCR4 (ENSBTAG00000001060)	DARS1 (ENSBTAG00000009949)	MCM6 (ENSBTAG00000015172) ##22	LCT (ENSBTAG00000015170)	UBXN4 (ENSBTAG00000015169)	R3HDM1 (ENSBTAG00000013302)	ZRANB3 (ENSBTAG00000026842)	ENSBTAG00000050570	RAB3GAP1 (ENSBTAG00000013449)	MAP3K19 (ENSBTAG00000014409)	CCNT2 (ENSBTAG00000014158)	ACMSD (ENSBTAG00000008039)	TMEM163 (ENSBTAG00000018753)	MGAT5 (ENSBTAG00000018744)	NCKAP5 (ENSBTAG00000005238)	LYPD1 (ENSBTAG00000005234)	GPR39 (ENSBTAG00000047036)	SLC35F5 (ENSBTAG00000021103)
American bison	DUPLICATION
American bison	MODERN SPECIES	3244	ZEB2 (ENSBBBG00000012207)	GTDC1 (ENSBBBG00000001921)	ARHGAP15 (ENSBBBG00000012328)	KYNU (ENSBBBG00000012350)	ENSBBBG00000002337	LRP1B (ENSBBBG00000012403)	ENSBBBG00000012412	NXPH2 (ENSBBBG00000012418)	SPOPL (ENSBBBG00000012429)	ENSBBBG00000002376	HNMT (ENSBBBG00000002381)	HNRNPA1L2 (ENSBBBG00000002385)	THSD7B (ENSBBBG00000012491)	CXCR4 (ENSBBBG00000012508)	DARS1 (ENSBBBG00000002399)	ENSBBBG00000012538 ##22	LCT (ENSBBBG00000012549)	UBXN4 (ENSBBBG00000012566)	R3HDM1 (ENSBBBG00000012694)	ZRANB3 (ENSBBBG00000012735)	RAB3GAP1 (ENSBBBG00000002477)	MAP3K19 (ENSBBBG00000002510)	CCNT2 (ENSBBBG00000001744)	ACMSD (ENSBBBG00000012859)	TMEM163 (ENSBBBG00000012878)	MGAT5 (ENSBBBG00000012893)	NCKAP5 (ENSBBBG00000012933)	LYPD1 (ENSBBBG00000012944)	ENSBBBG00000002561	ENSBBBG00000012949	SLC35F5 (ENSBBBG00000002588)
American bison	MODERN SPECIES	3066	EXTL3 (ENSBBBG00000006297)	FZD3 (ENSBBBG00000024196)	ENSBBBG00000007807	ZNF395 (ENSBBBG00000006273)	PNOC (ENSBBBG00000024099)	ENSBBBG00000024093	ENSBBBG00000006262	ELP3 (ENSBBBG00000006255)	NUGGC (ENSBBBG00000023948)	ZFP64 (ENSBBBG00000023903)	ENSBBBG00000008855	BCAS1 (ENSBBBG00000023792)	CYP24A1 (ENSBBBG00000023751)	ENSBBBG00000023699	DOK5 (ENSBBBG00000023680)	ENSBBBG00000023664 ##22
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000007776.d
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000157233	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00940000157233	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00900000143820	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00390000011085.sb.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00900000143820	ENSGT00390000011401.ib	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00390000011085.sb.a.a.a	ENSGT00940000164579.f	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Narwhal	MODERN SPECIES	302	ENSMMNG00015005217	ENSMMNG00015005234	ENSMMNG00015005241	ZEB2 (ENSMMNG00015005275)	ENSMMNG00015005304	GTDC1 (ENSMMNG00015005348)	ARHGAP15 (ENSMMNG00015005410)	KYNU (ENSMMNG00015005428)	LRP1B (ENSMMNG00015005526)	NXPH2 (ENSMMNG00015005810)	SPOPL (ENSMMNG00015005825)	HNMT (ENSMMNG00015005844)	THSD7B (ENSMMNG00015005865)	CXCR4 (ENSMMNG00015005885)	DARS1 (ENSMMNG00015005898)	MCM6 (ENSMMNG00015005976) ##22	LCT (ENSMMNG00015006012)	UBXN4 (ENSMMNG00015006041)	R3HDM1 (ENSMMNG00015006127)	ZRANB3 (ENSMMNG00015006291)	ENSMMNG00015006347	RAB3GAP1 (ENSMMNG00015006395)	CCNT2 (ENSMMNG00015006480)	ACMSD (ENSMMNG00015006514)	TMEM163 (ENSMMNG00015006547)	MGAT5 (ENSMMNG00015006577)	ENSMMNG00015006617	ENSMMNG00015006627	ENSMMNG00015006640	NCKAP5 (ENSMMNG00015006713)	ENSMMNG00015006851
Beluga whale	MODERN SPECIES	84	ENSDLEG00000017936	ENSDLEG00000017923	ZEB2 (ENSDLEG00000017853)	ENSDLEG00000017836	GTDC1 (ENSDLEG00000017703)	ARHGAP15 (ENSDLEG00000017655)	KYNU (ENSDLEG00000017616)	LRP1B (ENSDLEG00000017215)	NXPH2 (ENSDLEG00000017199)	SPOPL (ENSDLEG00000017165)	HNMT (ENSDLEG00000017149)	THSD7B (ENSDLEG00000017083)	ENSDLEG00000017079	CXCR4 (ENSDLEG00000017074)	DARS (ENSDLEG00000017015)	MCM6 (ENSDLEG00000016985) ##22	LCT (ENSDLEG00000016911)	UBXN4 (ENSDLEG00000016890)	R3HDM1 (ENSDLEG00000016834)	ZRANB3 (ENSDLEG00000016733)	RAB3GAP1 (ENSDLEG00000016616)	ENSDLEG00000016595	CCNT2 (ENSDLEG00000018071)	ACMSD (ENSDLEG00000018029)	TMEM163 (ENSDLEG00000018002)	MGAT5 (ENSDLEG00000017965)
Vaquita	MODERN SPECIES	18	ACVR2A (ENSPSNG00000010003)	ENSPSNG00000010077	ENSPSNG00000010130	ENSPSNG00000010148	ZEB2 (ENSPSNG00000010233)	GTDC1 (ENSPSNG00000010572)	ARHGAP15 (ENSPSNG00000010851)	KYNU (ENSPSNG00000011089)	LRP1B (ENSPSNG00000011597)	NXPH2 (ENSPSNG00000014280)	SPOPL (ENSPSNG00000014332)	HNMT (ENSPSNG00000014404)	THSD7B (ENSPSNG00000014532)	CXCR4 (ENSPSNG00000015228)	DARS1 (ENSPSNG00000015285)	MCM6 (ENSPSNG00000015366) ##22	LCT (ENSPSNG00000015477)	UBXN4 (ENSPSNG00000015726)	R3HDM1 (ENSPSNG00000015949)	ZRANB3 (ENSPSNG00000016864)	RAB3GAP1 (ENSPSNG00000017295)	CCNT2 (ENSPSNG00000017589)	ACMSD (ENSPSNG00000017684)	TMEM163 (ENSPSNG00000017853)	ENSPSNG00000017945	MGAT5 (ENSPSNG00000017999)	ENSPSNG00000018042	ENSPSNG00000018068	NCKAP5 (ENSPSNG00000018140)	ENSPSNG00000018466	LYPD1 (ENSPSNG00000018523)
Dolphin	MODERN SPECIES	2078																MCM6 (ENSTTRG00000003683) ##22
Blue whale	MODERN SPECIES	18	ENSBMSG00010002099	ENSBMSG00010002077	GTDC1 (ENSBMSG00010001738)	ARHGAP15 (ENSBMSG00010001671)	KYNU (ENSBMSG00010001637)	LRP1B (ENSBMSG00010001555)	ENSBMSG00010001515	ENSBMSG00010001508	NXPH2 (ENSBMSG00010001502)	SPOPL (ENSBMSG00010001484)	HNMT (ENSBMSG00010001464)	ENSBMSG00010001454	THSD7B (ENSBMSG00010001387)	CXCR4 (ENSBMSG00010001344)	DARS1 (ENSBMSG00010001326)	MCM6 (ENSBMSG00010001285) ##22	LCT (ENSBMSG00010001241)	ENSBMSG00010001212	R3HDM1 (ENSBMSG00010001141)	ZRANB3 (ENSBMSG00010001026)	RAB3GAP1 (ENSBMSG00010000960)	ENSBMSG00010000873	CCNT2 (ENSBMSG00010000833)	ACMSD (ENSBMSG00010000783)	TMEM163 (ENSBMSG00010000754)	MGAT5 (ENSBMSG00010000719)	ENSBMSG00010000681	NCKAP5 (ENSBMSG00010000614)	LYPD1 (ENSBMSG00010000564)	GPR39 (ENSBMSG00010000548)	ENSBMSG00010000523
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Carnivora	ANCESTRAL SPECIES	17	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Ursidae	ANCESTRAL SPECIES	7	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Ursus	ANCESTRAL SPECIES	162	ENSGT00390000008783.ab.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
American black bear	MODERN SPECIES	3982																MCM6 (ENSUAMG00000016821) ##22	LCT (ENSUAMG00000016966)	UBXN4 (ENSUAMG00000016980)
Polar bear	MODERN SPECIES	196	ACVR2A (ENSUMAG00000006456)	ENSUMAG00000006441	ZEB2 (ENSUMAG00000006420)	GTDC1 (ENSUMAG00000006399)	ARHGAP15 (ENSUMAG00000006377)	KYNU (ENSUMAG00000006355)	ENSUMAG00000006341	ENSUMAG00000006335	LRP1B (ENSUMAG00000006142)	NXPH2 (ENSUMAG00000006056)	SPOPL (ENSUMAG00000006049)	HNMT (ENSUMAG00000006034)	THSD7B (ENSUMAG00000005964)	CXCR4 (ENSUMAG00000005945)	DARS1 (ENSUMAG00000005942)	MCM6 (ENSUMAG00000005636) ##22	LCT (ENSUMAG00000005573)	UBXN4 (ENSUMAG00000005565)	R3HDM1 (ENSUMAG00000005552)	ZRANB3 (ENSUMAG00000005407)	RAB3GAP1 (ENSUMAG00000005260)	ENSUMAG00000005240	CCNT2 (ENSUMAG00000005230)	ACMSD (ENSUMAG00000005196)	TMEM163 (ENSUMAG00000005181)	MGAT5 (ENSUMAG00000005172)	ENSUMAG00000005144	LYPD1 (ENSUMAG00000005139)	ENSUMAG00000005137	GPR39 (ENSUMAG00000005134)	SLC35F5 (ENSUMAG00000005121)
Giant Panda	MODERN SPECIES	11	MBD5 (ENSAMEG00000004750)	ORC4 (ENSAMEG00000013398)	ACVR2A (ENSAMEG00000013434)	ZEB2 (ENSAMEG00000009337)	ENSAMEG00000028035	GTDC1 (ENSAMEG00000013100)	ARHGAP15 (ENSAMEG00000013114)	KYNU (ENSAMEG00000013126)	ENSAMEG00000012519	LRP1B (ENSAMEG00000012450)	NXPH2 (ENSAMEG00000015387)	SPOPL (ENSAMEG00000002595)	THSD7B (ENSAMEG00000014390)	CXCR4 (ENSAMEG00000019163)	DARS1 (ENSAMEG00000005881)	MCM6 (ENSAMEG00000005841) ##22	LCT (ENSAMEG00000005800)	UBXN4 (ENSAMEG00000003672)	R3HDM1 (ENSAMEG00000014886)	ZRANB3 (ENSAMEG00000016419)	RAB3GAP1 (ENSAMEG00000016369)	MAP3K19 (ENSAMEG00000016364)	CCNT2 (ENSAMEG00000016341)	ACMSD (ENSAMEG00000016329)	TMEM163 (ENSAMEG00000016323)	MGAT5 (ENSAMEG00000016315)	NCKAP5 (ENSAMEG00000015179)	ENSAMEG00000003070	ENSAMEG00000003064	ENSAMEG00000003041	ACTR3 (ENSAMEG00000014979)
Mustelinae	ANCESTRAL SPECIES	154										ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
American mink	MODERN SPECIES	93								LRP1B (ENSNVIG00000013726)	ENSNVIG00000013867	NXPH2 (ENSNVIG00000013872)	SPOPL (ENSNVIG00000013883)	HNMT (ENSNVIG00000013889)	THSD7B (ENSNVIG00000013908)	CXCR4 (ENSNVIG00000013959)	DARS1 (ENSNVIG00000013966)	MCM6 (ENSNVIG00000013989) ##22	LCT (ENSNVIG00000013999)	UBXN4 (ENSNVIG00000014041)	R3HDM1 (ENSNVIG00000014091)	ENSNVIG00000014428	ZRAB3 (ENSNVIG00000014442)	RAB3GAP1 (ENSNVIG00000014588)	ENSNVIG00000014683	CCNT2 (ENSNVIG00000014690)	ACMSD (ENSNVIG00000014719)
Ferret	MODERN SPECIES	356													THSD7B (ENSMPUG00000002246)	CXCR4 (ENSMPUG00000002256)	DARS1 (ENSMPUG00000002259)	MCM6 (ENSMPUG00000002265) ##22	LCT (ENSMPUG00000002320)	UBXN4 (ENSMPUG00000002362)	R3HDM1 (ENSMPUG00000002412)	ZRANB3 (ENSMPUG00000002528)	RAB3GAP1 (ENSMPUG00000002536)	MAP3K19 (ENSMPUG00000002541)	CCNT2 (ENSMPUG00000002548)	ACMSD (ENSMPUG00000002552)	TMEM163 (ENSMPUG00000002580)	MGAT5 (ENSMPUG00000002586)
Canidae	ANCESTRAL SPECIES	56	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Canis_lupus	ANCESTRAL SPECIES	46	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT00940000158012.c.a.a.a	ENSGT01100000263518.A.a.b
Dog	MODERN SPECIES	10	ACVR2A (ENSCAFG00845006266)	ZEB2 (ENSCAFG00845006084)	GTDC1 (ENSCAFG00845013883)	ARHGAP15 (ENSCAFG00845013638)	KYNU (ENSCAFG00845013520)	ENSCAFG00845013470	ENSCAFG00845013421	ENSCAFG00845013405	LRP1B (ENSCAFG00845011094)	NXPH2 (ENSCAFG00845010560)	SPOPL (ENSCAFG00845010518)	HNMT (ENSCAFG00845010412)	THSD7B (ENSCAFG00845010239)	ENSCAFG00845010172	DARS1 (ENSCAFG00845010085)	MCM6 (ENSCAFG00845009951) ##22	LCT (ENSCAFG00845009807)	UBXN4 (ENSCAFG00845009744)	R3HDM1 (ENSCAFG00845009448)	ZRANB3 (ENSCAFG00845009173)	RAB3GAP1 (ENSCAFG00845008763)	MAP3K19 (ENSCAFG00845008480)	CCNT2 (ENSCAFG00845008293)	ACMSD (ENSCAFG00845008146)	TMEM163 (ENSCAFG00845008028)	MGAT5 (ENSCAFG00845007969)	ENSCAFG00845007813	NCKAP5 (ENSCAFG00845007269)	ENSCAFG00845006921	ENSCAFG00845006875	ENSCAFG00845006855
Dingo	MODERN SPECIES	101	ACVR2A (ENSCAFG00020016337)	ZEB2 (ENSCAFG00020016311)	ENSCAFG00020016307	GTDC1 (ENSCAFG00020016302)	ARHGAP15 (ENSCAFG00020016269)	KYNU (ENSCAFG00020016256)	ENSCAFG00020016252	LRP1B (ENSCAFG00020016211)	ENSCAFG00020016205	NXPH2 (ENSCAFG00020016197)	SPOPL (ENSCAFG00020016186)	HNMT (ENSCAFG00020016185)	THSD7B (ENSCAFG00020016172)	CXCR4 (ENSCAFG00020016170)	DARS1 (ENSCAFG00020016165)	MCM6 (ENSCAFG00020016161) ##22	LCT (ENSCAFG00020016158)	UBXN4 (ENSCAFG00020016138)	R3HDM1 (ENSCAFG00020016119)	ZRANB3 (ENSCAFG00020016080)	RAB3GAP1 (ENSCAFG00020015740)	ENSCAFG00020015733	CCNT2 (ENSCAFG00020015731)	ACMSD (ENSCAFG00020015725)	TMEM163 (ENSCAFG00020015719)	ENSCAFG00020015709	ENSCAFG00020015687	LYPD1 (ENSCAFG00020015684)	ENSCAFG00020015681	ENSCAFG00020015678	GPR39 (ENSCAFG00020015677)
Red fox	MODERN SPECIES	113														CXCR4 (ENSVVUG00000007094)	DARS (ENSVVUG00000007081)	MCM6 (ENSVVUG00000007061) ##22	LCT (ENSVVUG00000006793)	UBXN4 (ENSVVUG00000006542)	R3HDM1 (ENSVVUG00000006457)	ENSVVUG00000006450	ZRANB3 (ENSVVUG00000006362)	RAB3GAP1 (ENSVVUG00000006300)	MAP3K19 (ENSVVUG00000006280)	CCNT2 (ENSVVUG00000006262)	ACMSD (ENSVVUG00000006257)	TMEM163 (ENSVVUG00000006244)	MGAT5 (ENSVVUG00000006220)	NCKAP5 (ENSVVUG00000006181)	LYPD1 (ENSVVUG00000006177)	ENSVVUG00000006174	ENSVVUG00000006164
Felidae	ANCESTRAL SPECIES	15	ENSGT00390000016542	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Panthera	ANCESTRAL SPECIES	9	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00390000008903.m.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00390000004755.z	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Tiger	MODERN SPECIES	593															DARS1 (ENSPTIG00000004863)	MCM6 (ENSPTIG00000020771) ##22	LCT (ENSPTIG00000020184)	UBXN4 (ENSPTIG00000019414)	R3HDM1 (ENSPTIG00000016581)	ENSPTIG00000016006	ZRANB3 (ENSPTIG00000014207)	ENSPTIG00000013887	RAB3GAP1 (ENSPTIG00000012072)	ENSPTIG00000010805	CCNT2 (ENSPTIG00000008723)	ACMSD (ENSPTIG00000007502)	TMEM163 (ENSPTIG00000006597)	MGAT5 (ENSPTIG00000004901)	ENSPTIG00000002860	NCKAP5 (ENSPTIG00000021077)	LYPD1 (ENSPTIG00000020835)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00390000008903.m.a.a.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01100000263767.a.a	ENSGT00390000004755.z	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
leopard	MODERN SPECIES	1	ENSPPRG00000016894	ZEB2 (ENSPPRG00000023971)	GTDC1 (ENSPPRG00000002408)	ARHGAP15 (ENSPPRG00000003769)	KYNU (ENSPPRG00000004587)	LRP1B (ENSPPRG00000009154)	ENSPPRG00000017355	ENSPPRG00000017377	ENSPPRG00000012169	NXPH2 (ENSPPRG00000012365)	SPOPL (ENSPPRG00000013080)	HNMT (ENSPPRG00000013385)	THSD7B (ENSPPRG00000024481)	CXCR4 (ENSPPRG00000024427)	DARS1 (ENSPPRG00000024294)	MCM6 (ENSPPRG00000023335) ##22	LCT (ENSPPRG00000022850)	UBXN4 (ENSPPRG00000000615)	R3HDM1 (ENSPPRG00000002626)	ZRANB3 (ENSPPRG00000006011)	ENSPPRG00000006436	RAB3GAP1 (ENSPPRG00000009297)	ENSPPRG00000012476	CCNT2 (ENSPPRG00000013025)	ACMSD (ENSPPRG00000014298)	TMEM163 (ENSPPRG00000017089)	MGAT5 (ENSPPRG00000022919)	ENSPPRG00000018156	NCKAP5 (ENSPPRG00000001014)	LYPD1 (ENSPPRG00000001456)	GPR39 (ENSPPRG00000001979)
lion	MODERN SPECIES	8	GTDC1 (ENSPLOG00000004848)	ARHGAP15 (ENSPLOG00000004919)	KYNU (ENSPLOG00000004977)	ENSPLOG00000005011	LRP1B (ENSPLOG00000005161)	ENSPLOG00000005421	NXPH2 (ENSPLOG00000005437)	SPOPL (ENSPLOG00000005460)	HNMT (ENSPLOG00000005608)	THSD7B (ENSPLOG00000005685)	ENSPLOG00000005928	ENSPLOG00000005948	ENSPLOG00000005961	CXCR4 (ENSPLOG00000005971)	DARS1 (ENSPLOG00000006015)	MCM6 (ENSPLOG00000006081) ##22	LCT (ENSPLOG00000006123)	UBXN4 (ENSPLOG00000006259)	R3HDM1 (ENSPLOG00000006513)	ZRANB3 (ENSPLOG00000006791)	RAB3GAP1 (ENSPLOG00000006997)	MAP3K19 (ENSPLOG00000007107)	CCNT2 (ENSPLOG00000007236)	ACMSD (ENSPLOG00000007318)	TMEM163 (ENSPLOG00000007370)	MGAT5 (ENSPLOG00000007485)	ENSPLOG00000007548	ENSPLOG00000007558	NCKAP5 (ENSPLOG00000007593)	LYPD1 (ENSPLOG00000007721)	GPR39 (ENSPLOG00000007748)
Cat	MODERN SPECIES	239	ORC4 (ENSFCAG00000029890)	ACVR2A (ENSFCAG00000023845)	ENSFCAG00000037177	ENSFCAG00000022964	ZEB2 (ENSFCAG00000015532)	GTDC1 (ENSFCAG00000012314)	ARHGAP15 (ENSFCAG00000011613)	KYNU (ENSFCAG00000018501)	LRP1B (ENSFCAG00000026584)	NXPH2 (ENSFCAG00000039021)	SPOPL (ENSFCAG00000040800)	HNMT (ENSFCAG00000022918)	THSD7B (ENSFCAG00000013556)	CXCR4 (ENSFCAG00000015575)	DARS1 (ENSFCAG00000014295)	MCM6 (ENSFCAG00000013595) ##22	LCT (ENSFCAG00000009430)	UBXN4 (ENSFCAG00000031029)	R3HDM1 (ENSFCAG00000027113)	ZRANB3 (ENSFCAG00000024830)	RAB3GAP1 (ENSFCAG00000040704)	MAP3K19 (ENSFCAG00000026221)	CCNT2 (ENSFCAG00000003956)	ACMSD (ENSFCAG00000003955)	TMEM163 (ENSFCAG00000045338)	MGAT5 (ENSFCAG00000015759)	ENSFCAG00000048299	ENSFCAG00000042540	ENSFCAG00000045530	ENSFCAG00000047696	NCKAP5 (ENSFCAG00000004991)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT01020000230615	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Equus	ANCESTRAL SPECIES	18	ENSGT00940000157233	ENSGT01030000234916	ENSGT00960000193288	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00390000000805.h	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Donkey	MODERN SPECIES	24	ENSEASG00005023463	ENSEASG00005024596	ZEB2 (ENSEASG00005030252)	GTDC1 (ENSEASG00005023470)	ARHGAP15 (ENSEASG00005023473)	KYNU (ENSEASG00005023479)	LRP1B (ENSEASG00005023483)	NXPH2 (ENSEASG00005034518)	SPOPL (ENSEASG00005007329)	ENSEASG00005026069	HNMT (ENSEASG00005007333)	THSD7B (ENSEASG00005007338)	CXCR4 (ENSEASG00005007346)	DARS1 (ENSEASG00005007349)	ENSEASG00005034643	MCM6 (ENSEASG00005007355) ##22	ENSEASG00005007359	LCT (ENSEASG00005007363)	UBXN4 (ENSEASG00005007369)	R3HDM1 (ENSEASG00005007392)	ZRANB3 (ENSEASG00005007414)	ENSEASG00005007411	RAB3GAP1 (ENSEASG00005007419)	MAP3K19 (ENSEASG00005007431)	CCNT2 (ENSEASG00005007433)	ACMSD (ENSEASG00005007438)	TMEM163 (ENSEASG00005007445)	MGAT5 (ENSEASG00005007448)	NCKAP5 (ENSEASG00005007468)	ENSEASG00005007486	ENSEASG00005026537
Horse	MODERN SPECIES	9	ACVR2A (ENSECAG00000000138)	ENSECAG00000039452	ZEB2 (ENSECAG00000019355)	GTDC1 (ENSECAG00000014136)	ARHGAP15 (ENSECAG00000012312)	KYNU (ENSECAG00000018188)	ENSECAG00000052918	LRP1B (ENSECAG00000012212)	NXPH2 (ENSECAG00000023822)	SPOPL (ENSECAG00000013631)	ENSECAG00000031440	HNMT (ENSECAG00000011592)	THSD7B (ENSECAG00000007595)	CXCR4 (ENSECAG00000003837)	DARS1 (ENSECAG00000024197)	MCM6 (ENSECAG00000008840) ##22	ENSECAG00000007662	LCT (ENSECAG00000018594)	UBXN4 (ENSECAG00000008941)	R3HDM1 (ENSECAG00000019114)	ZRANB3 (ENSECAG00000011232)	ENSECAG00000057824	RAB3GAP1 (ENSECAG00000012270)	MAP3K19 (ENSECAG00000009919)	CCNT2 (ENSECAG00000022763)	ACMSD (ENSECAG00000017797)	TMEM163 (ENSECAG00000017568)	MGAT5 (ENSECAG00000019492)	NCKAP5 (ENSECAG00000017122)	LYPD1 (ENSECAG00000026896)	GPR39 (ENSECAG00000005577)
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00390000016542	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00390000016542	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Microbat	MODERN SPECIES	1249														CXCR4 (ENSMLUG00000005717)	DARS1 (ENSMLUG00000005671)	MCM6 (ENSMLUG00000013864) ##22	LCT (ENSMLUG00000013850)	UBXN4 (ENSMLUG00000013842)	R3HDM1 (ENSMLUG00000013824)	ENSMLUG00000022672	ZRANB3 (ENSMLUG00000009977)
Greater horseshoe bat	MODERN SPECIES	26	ARHGAP15 (ENSRFEG00010005362)	KYNU (ENSRFEG00010005399)	LRP1B (ENSRFEG00010005535)	ENSRFEG00010005820	ENSRFEG00010005852	NXPH2 (ENSRFEG00010005863)	SPOPL (ENSRFEG00010005880)	ENSRFEG00010005902	HNMT (ENSRFEG00010005923)	THSD7B (ENSRFEG00010005956)	ENSRFEG00010005984	CXCR4 (ENSRFEG00010006005)	ENSRFEG00010006026	DARS1 (ENSRFEG00010006082)	ENSRFEG00010006141	MCM6 (ENSRFEG00010006164) ##22	ENSRFEG00010006205	ENSRFEG00010006221	LCT (ENSRFEG00010006250)	UBXN4 (ENSRFEG00010006282)	R3HDM1 (ENSRFEG00010006460)	ZRANB3 (ENSRFEG00010006895)	RAB3GAP1 (ENSRFEG00010007081)	MAP3K19 (ENSRFEG00010007402)	CCNT2 (ENSRFEG00010007854)	ACMSD (ENSRFEG00010007914)	TMEM163 (ENSRFEG00010008075)	MGAT5 (ENSRFEG00010008097)	NCKAP5 (ENSRFEG00010008169)	ENSRFEG00010008520	GPR39 (ENSRFEG00010008578)
Megabat	MODERN SPECIES	78																MCM6 (ENSPVAG00000006608) ##22	LCT (ENSPVAG00000006607)
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01050000244986.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Primates	ANCESTRAL SPECIES	13	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01050000244986.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01050000244986.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000157233	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000157233	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215
Hominidae	ANCESTRAL SPECIES	17	ENSGT00940000157233	ENSGT00950000183208.A.c.a.e	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00940000168614	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00950000183208.A.c.a.e	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147954	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147954	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Pan	ANCESTRAL SPECIES	12	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00390000007384.c.b	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT01090000260061.c.b.lg.b.b.b	ENSGT00390000002862	ENSGT00940000159262	ENSGT00940000153434.a.b.a.b.l	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147954	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b
Chimpanzee	MODERN SPECIES	15	GTDC1 (ENSPTRG00000012511)	ARHGAP15 (ENSPTRG00000012510)	KYNU (ENSPTRG00000012509)	ENSPTRG00000048004	LRP1B (ENSPTRG00000012508)	ENSPTRG00000042896	ENSPTRG00000052120	NXPH2 (ENSPTRG00000012505)	SPOPL (ENSPTRG00000012504)	ENSPTRG00000042850	HNMT (ENSPTRG00000012503)	THSD7B (ENSPTRG00000012502)	ENSPTRG00000042775	CXCR4 (ENSPTRG00000012501)	DARS1 (ENSPTRG00000012500)	MCM6 (ENSPTRG00000012498) ##22	LCT (ENSPTRG00000012497)	UBXN4 (ENSPTRG00000012496)	R3HDM1 (ENSPTRG00000012494)	ENSPTRG00000046031	ZRANB3 (ENSPTRG00000012492)	RAB3GAP1 (ENSPTRG00000012491)	MAP3K19 (ENSPTRG00000012490)	CCNT2 (ENSPTRG00000024043)	ACMSD (ENSPTRG00000012488)	TMEM163 (ENSPTRG00000012486)	ENSPTRG00000052878	ENSPTRG00000052860	MGAT5 (ENSPTRG00000012485)	NCKAP5 (ENSPTRG00000050546)	LYPD1 (ENSPTRG00000012479)
Bonobo	MODERN SPECIES	15	ARHGAP15 (ENSPPAG00000031056)	KYNU (ENSPPAG00000008434)	ENSPPAG00000039032	LRP1B (ENSPPAG00000003706)	ENSPPAG00000041987	ENSPPAG00000040658	NXPH2 (ENSPPAG00000039555)	SPOPL (ENSPPAG00000001924)	ENSPPAG00000038546	HNMT (ENSPPAG00000030141)	THSD7B (ENSPPAG00000036421)	ENSPPAG00000009775	ENSPPAG00000032080	CXCR4 (ENSPPAG00000041523)	DARS1 (ENSPPAG00000039644)	MCM6 (ENSPPAG00000014507) ##22	LCT (ENSPPAG00000005000)	UBXN4 (ENSPPAG00000041972)	R3HDM1 (ENSPPAG00000027858)	ENSPPAG00000039991	ZRANB3 (ENSPPAG00000029480)	RAB3GAP1 (ENSPPAG00000028809)	MAP3K19 (ENSPPAG00000040650)	CCNT2 (ENSPPAG00000037070)	ACMSD (ENSPPAG00000039483)	ENSPPAG00000036605	MGAT5 (ENSPPAG00000032538)	NCKAP5 (ENSPPAG00000037197)	LYPD1 (ENSPPAG00000029105)	GPR39 (ENSPPAG00000039943)	ENSPPAG00000039115
Human	MODERN SPECIES	11	EPC2 (ENSG00000135999)	MBD5 (ENSG00000204406)	ORC4 (ENSG00000115947)	ACVR2A (ENSG00000121989)	ZEB2 (ENSG00000169554)	GTDC1 (ENSG00000121964)	ARHGAP15 (ENSG00000075884)	KYNU (ENSG00000115919)	LRP1B (ENSG00000168702)	NXPH2 (ENSG00000144227)	SPOPL (ENSG00000144228)	HNMT (ENSG00000150540)	THSD7B (ENSG00000144229)	CXCR4 (ENSG00000121966)	DARS1 (ENSG00000115866)	MCM6 (ENSG00000076003) ##22	LCT (ENSG00000115850)	UBXN4 (ENSG00000144224)	R3HDM1 (ENSG00000048991)	ZRANB3 (ENSG00000121988)	RAB3GAP1 (ENSG00000115839)	MAP3K19 (ENSG00000176601)	CCNT2 (ENSG00000082258)	ACMSD (ENSG00000153086)	TMEM163 (ENSG00000152128)	MGAT5 (ENSG00000152127)	NCKAP5 (ENSG00000176771)	LYPD1 (ENSG00000150551)	GPR39 (ENSG00000183840)	ANKRD30BL (ENSG00000163046)	CCDC74A (ENSG00000163040)
Gorilla	MODERN SPECIES	15	ZEB2 (ENSGGOG00000003186)	ENSGGOG00000039783	GTDC1 (ENSGGOG00000015776)	ARHGAP15 (ENSGGOG00000034982)	KYNU (ENSGGOG00000007406)	LRP1B (ENSGGOG00000040868)	ENSGGOG00000026916	NXPH2 (ENSGGOG00000008363)	SPOPL (ENSGGOG00000016285)	HNMT (ENSGGOG00000011567)	THSD7B (ENSGGOG00000009703)	ENSGGOG00000040151	ENSGGOG00000037201	CXCR4 (ENSGGOG00000016862)	DARS1 (ENSGGOG00000007482)	MCM6 (ENSGGOG00000010911) ##22	LCT (ENSGGOG00000002058)	UBXN4 (ENSGGOG00000027757)	R3HDM1 (ENSGGOG00000008156)	ENSGGOG00000023113	ZRANB3 (ENSGGOG00000003782)	RAB3GAP1 (ENSGGOG00000015070)	MAP3K19 (ENSGGOG00000014556)	CCNT2 (ENSGGOG00000040615)	ACMSD (ENSGGOG00000009672)	TMEM163 (ENSGGOG00000011041)	ENSGGOG00000041040	MGAT5 (ENSGGOG00000003032)	NCKAP5 (ENSGGOG00000014638)	LYPD1 (ENSGGOG00000014632)	GPR39 (ENSGGOG00000014629)
Orangutan	MODERN SPECIES	15	ORC4 (ENSPPYG00000012835)	ACVR2A (ENSPPYG00000012834)	ZEB2 (ENSPPYG00000012831)	ENSPPYG00000031095	GTDC1 (ENSPPYG00000034543)	ARHGAP15 (ENSPPYG00000012828)	KYNU (ENSPPYG00000012827)	LRP1B (ENSPPYG00000012826)	NXPH2 (ENSPPYG00000031440)	SPOPL (ENSPPYG00000039370)	ENSPPYG00000018028	HNMT (ENSPPYG00000012824)	THSD7B (ENSPPYG00000036773)	CXCR4 (ENSPPYG00000012823)	DARS1 (ENSPPYG00000012822)	MCM6 (ENSPPYG00000012821) ##22	LCT (ENSPPYG00000012820)	UBXN4 (ENSPPYG00000012819)	R3HDM1 (ENSPPYG00000012815)	ENSPPYG00000040048	ENSPPYG00000012814	RAB3GAP1 (ENSPPYG00000012813)	MAP3K19 (ENSPPYG00000012812)	CCNT2 (ENSPPYG00000012811)	ACMSD (ENSPPYG00000012810)	ENSPPYG00000041744	TMEM163 (ENSPPYG00000012809)	MGAT5 (ENSPPYG00000012808)	NCKAP5 (ENSPPYG00000012806)	LYPD1 (ENSPPYG00000038777)	GPR39 (ENSPPYG00000012804)
Gibbon	MODERN SPECIES	12	GTDC1 (ENSNLEG00000009003)	ARHGAP15 (ENSNLEG00000008984)	KYNU (ENSNLEG00000008970)	LRP1B (ENSNLEG00000008924)	ENSNLEG00000030102	ENSNLEG00000028194	NXPH2 (ENSNLEG00000008920)	ENSNLEG00000030338	ENSNLEG00000033628	HNMT (ENSNLEG00000008899)	THSD7B (ENSNLEG00000008876)	ENSNLEG00000028168	ENSNLEG00000031448	CXCR4 (ENSNLEG00000008873)	DARS1 (ENSNLEG00000032858)	MCM6 (ENSNLEG00000008748) ##22	LCT (ENSNLEG00000008718)	UBXN4 (ENSNLEG00000008675)	R3HDM1 (ENSNLEG00000008622)	ZRANB3 (ENSNLEG00000008561)	ENSNLEG00000030245	RAB3GAP1 (ENSNLEG00000008500)	MAP3K19 (ENSNLEG00000008465)	CCNT2 (ENSNLEG00000008432)	ACMSD (ENSNLEG00000008409)	TMEM163 (ENSNLEG00000008393)	ENSNLEG00000032873	MGAT5 (ENSNLEG00000008354)	NCKAP5 (ENSNLEG00000008327)	LYPD1 (ENSNLEG00000008321)	GPR39 (ENSNLEG00000008318)
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000157233	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b
Rhinopithecus	ANCESTRAL SPECIES	228												ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147620	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215
Golden snub-nosed monkey	MODERN SPECIES	643															DARS1 (ENSRROG00000037355)	MCM6 (ENSRROG00000038657) ##22	LCT (ENSRROG00000036958)	UBXN4 (ENSRROG00000031101)	R3HDM1 (ENSRROG00000034534)	ZRANB3 (ENSRROG00000038728)	ENSRROG00000045035	ENSRROG00000032247	RAB3GAP1 (ENSRROG00000033477)	MAP3K19 (ENSRROG00000042370)	CCNT2 (ENSRROG00000038634)	ACMSD (ENSRROG00000032370)	MAP1LC3B2 (ENSRROG00000007151)
Black snub-nosed monkey	MODERN SPECIES	911												ENSRBIG00000029012	ENSRBIG00000033695	CXCR4 (ENSRBIG00000029356)	DARS1 (ENSRBIG00000001796)	MCM6 (ENSRBIG00000038495) ##22	LCT (ENSRBIG00000039229)	UBXN4 (ENSRBIG00000004771)	R3HDM1 (ENSRBIG00000033317)	ENSRBIG00000028792	ZRANB3 (ENSRBIG00000039852)	RAB3GAP1 (ENSRBIG00000043681)	MAP3K19 (ENSRBIG00000035927)	CCNT2 (ENSRBIG00000033581)	ACMSD (ENSRBIG00000032023)	TMEM163 (ENSRBIG00000040158)	ENSRBIG00000015170	ENSRBIG00000041688	MGAT5 (ENSRBIG00000044917)	ENSRBIG00000040148	RNASEH2A (ENSRBIG00000023554)
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00950000183208.A.c.a.e	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00390000015060.m.d	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000162517.l	ENSGT00390000011365.a	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00900000143214	ENSGT00910000147897	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00390000015060.m.d	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00940000159262	ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT01050000244986.a.a.a.a.b.a.b.b.a.b	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b
Cercopithecinae_d	ANCESTRAL SPECIES	163												ENSGT00940000163355	ENSGT00940000153434.a.b.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00910000147620	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT00390000002215
Sooty mangabey	MODERN SPECIES	156										ENSCATG00000021593	ENSCATG00000012682	ENSCATG00000011087	ENSCATG00000041113	CXCR4 (ENSCATG00000010566)	DARS1 (ENSCATG00000038494)	MCM6 (ENSCATG00000029528) ##22	LCT (ENSCATG00000032713)	UBXN4 (ENSCATG00000008333)	R3HDM1 (ENSCATG00000023642)	ENSCATG00000039913	ENSCATG00000029602	ZRANB3 (ENSCATG00000041950)	RAB3GAP1 (ENSCATG00000035248)	MAP3K19 (ENSCATG00000036468)	CCNT2 (ENSCATG00000026405)	ACMSD (ENSCATG00000034488)	ENSCATG00000024289	TMEM163 (ENSCATG00000038921)	ENSCATG00000037791	MGAT5 (ENSCATG00000033052)	ENSCATG00000038961
Drill	MODERN SPECIES	1680												ENSMLEG00000032696	ENSMLEG00000039428	CXCR4 (ENSMLEG00000015246)	DARS1 (ENSMLEG00000010853)	MCM6 (ENSMLEG00000043369) ##22	LCT (ENSMLEG00000031664)	UBXN4 (ENSMLEG00000041150)	R3HDM1 (ENSMLEG00000043189)	ENSMLEG00000032050	ZRANB3 (ENSMLEG00000028200)	RAB3GAP1 (ENSMLEG00000043679)	MAP3K19 (ENSMLEG00000032802)	CCNT2 (ENSMLEG00000044356)	ACMSD (ENSMLEG00000032474)	TMEM163 (ENSMLEG00000044365)	ENSMLEG00000043027	MGAT5 (ENSMLEG00000031822)	ENSMLEG00000039102	NCKAP5 (ENSMLEG00000028051)	LYPD1 (ENSMLEG00000035076)
Olive baboon	MODERN SPECIES	1	GTDC1 (ENSPANG00000021875)	ARHGAP15 (ENSPANG00000009773)	KYNU (ENSPANG00000019763)	ENSPANG00000050765	ENSPANG00000039415	ENSPANG00000046031	LRP1B (ENSPANG00000007101)	ENSPANG00000018859	ENSPANG00000038498	NXPH2 (ENSPANG00000015734)	SPOPL (ENSPANG00000019764)	THSD7B (ENSPANG00000018339)	ENSPANG00000046987	CXCR4 (ENSPANG00000005008)	DARS1 (ENSPANG00000008858)	MCM6 (ENSPANG00000021001) ##22	LCT (ENSPANG00000015018)	UBXN4 (ENSPANG00000010074)	R3HDM1 (ENSPANG00000026448)	ENSPANG00000040035	ZRANB3 (ENSPANG00000007838)	RAB3GAP1 (ENSPANG00000000668)	ENSPANG00000002725	MAP3K19 (ENSPANG00000000669)	CCNT2 (ENSPANG00000020314)	ACMSD (ENSPANG00000012836)	TMEM163 (ENSPANG00000005423)	MGAT5 (ENSPANG00000018425)	ENSPANG00000006778	NCKAP5 (ENSPANG00000019274)	LYPD1 (ENSPANG00000018831)
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00910000147617	ENSGT00390000015060.m.d	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00940000154507.g.b	ENSGT00390000008527.k.a.d	ENSGT00390000002862.i.b	ENSGT00390000008859.b.d.k.b.f	ENSGT00940000159262	ENSGT00940000163355	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT01050000244986.a.a.a.a.b.a.b.b.a.b	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00390000011864.o.b	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00950000183208.A.c.a.e	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000015060.m.d	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.i.a	ENSGT00390000002862.i.b	ENSGT00390000008859.b.d.k.b.f	ENSGT00940000159262	ENSGT01100000263493.a.b.a.a.a.a.a.a.a.a.a.a.a.a.b	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT01050000244986.a.a.a.a.b.a.b.b.a.b	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00940000166898.a.a.b.b.a.a.b.b.b.a	ENSGT00530000063607.b	ENSGT01030000235139	ENSGT00390000002215
Rhesus	MODERN SPECIES	3	ZEB2 (ENSMMUG00000016845)	GTDC1 (ENSMMUG00000011922)	ARHGAP15 (ENSMMUG00000006528)	KYNU (ENSMMUG00000021330)	LRP1B (ENSMMUG00000009885)	ENSMMUG00000013925	NXPH2 (ENSMMUG00000005176)	SPOPL (ENSMMUG00000002560)	HNMT (ENSMMUG00000006918)	ENSMMUG00000042063	THSD7B (ENSMMUG00000017081)	ENSMMUG00000061465	CXCR4 (ENSMMUG00000011918)	ENSMMUG00000063101	DARS1 (ENSMMUG00000040854)	MCM6 (ENSMMUG00000017486) ##22	LCT (ENSMMUG00000012250)	UBXN4 (ENSMMUG00000012248)	R3HDM1 (ENSMMUG00000009844)	ENSMMUG00000054949	ZRANB3 (ENSMMUG00000000765)	RAB3GAP1 (ENSMMUG00000014630)	ENSMMUG00000058599	MAP3K19 (ENSMMUG00000017121)	CCNT2 (ENSMMUG00000010196)	ACMSD (ENSMMUG00000010195)	TMEM163 (ENSMMUG00000059634)	MGAT5 (ENSMMUG00000010563)	ENSMMUG00000056889	NCKAP5 (ENSMMUG00000045491)	ENSMMUG00000045065
Crab-eating macaque	MODERN SPECIES	3	KYNU (ENSMFAG00000041160)	ENSMFAG00000049588	ENSMFAG00000064685	LRP1B (ENSMFAG00000036929)	NXPH2 (ENSMFAG00000039309)	SPOPL (ENSMFAG00000033909)	ENSMFAG00000040453	ENSMFAG00000035962	ENSMFAG00000049120	THSD7B (ENSMFAG00000031342)	ENSMFAG00000058697	ENSMFAG00000042200	CXCR4 (ENSMFAG00000037063)	ENSMFAG00000056496	DARS1 (ENSMFAG00000008693)	MCM6 (ENSMFAG00000041102) ##22	LCT (ENSMFAG00000043296)	UBXN4 (ENSMFAG00000002817)	R3HDM1 (ENSMFAG00000030331)	ENSMFAG00000055707	ZRANB3 (ENSMFAG00000034071)	RAB3GAP1 (ENSMFAG00000026109)	MAP3K19 (ENSMFAG00000043568)	CCNT2 (ENSMFAG00000042791)	ACMSD (ENSMFAG00000001001)	TMEM163 (ENSMFAG00000004027)	MGAT5 (ENSMFAG00000002058)	ENSMFAG00000055532	NCKAP5 (ENSMFAG00000035593)	LYPD1 (ENSMFAG00000033924)	ENSMFAG00000055082
Pig-tailed macaque	MODERN SPECIES	192	KYNU (ENSMNEG00000028278)	ENSMNEG00000000025	LRP1B (ENSMNEG00000044502)	ENSMNEG00000019241	ENSMNEG00000007981	NXPH2 (ENSMNEG00000042710)	SPOPL (ENSMNEG00000039162)	ENSMNEG00000037114	ENSMNEG00000043854	ENSMNEG00000043214	ENSMNEG00000045373	THSD7B (ENSMNEG00000030691)	ENSMNEG00000028907	CXCR4 (ENSMNEG00000032574)	DARS1 (ENSMNEG00000028601)	MCM6 (ENSMNEG00000030267) ##22	LCT (ENSMNEG00000041995)	UBXN4 (ENSMNEG00000009382)	R3HDM1 (ENSMNEG00000027793)	ENSMNEG00000042994	ZRANB3 (ENSMNEG00000015978)	RAB3GAP1 (ENSMNEG00000031864)	MAP3K19 (ENSMNEG00000033333)	CCNT2 (ENSMNEG00000042821)	ACMSD (ENSMNEG00000028900)	TMEM163 (ENSMNEG00000032280)	MGAT5 (ENSMNEG00000035554)	ENSMNEG00000042204	NCKAP5 (ENSMNEG00000040558)	LYPD1 (ENSMNEG00000016693)	GPR39 (ENSMNEG00000038370)
Vervet Monkey	MODERN SPECIES	1	MBD5 (ENSCSAG00000016175)	ORC4 (ENSCSAG00000016183)	ACVR2A (ENSCSAG00000016192)	ZEB2 (ENSCSAG00000016197)	GTDC1 (ENSCSAG00000016202)	ARHGAP15 (ENSCSAG00000016210)	KYNU (ENSCSAG00000016218)	LRP1B (ENSCSAG00000016246)	NXPH2 (ENSCSAG00000016269)	SPOPL (ENSCSAG00000016280)	HNMT (ENSCSAG00000016288)	ENSCSAG00000018644	ENSCSAG00000016290	CXCR4 (ENSCSAG00000016296)	DARS1 (ENSCSAG00000016303)	MCM6 (ENSCSAG00000016311) ##22	LCT (ENSCSAG00000016321)	UBXN4 (ENSCSAG00000016344)	R3HDM1 (ENSCSAG00000016356)	ENSCSAG00000016361	ZRANB3 (ENSCSAG00000016368)	RAB3GAP1 (ENSCSAG00000016378)	MAP3K19 (ENSCSAG00000016399)	CCNT2 (ENSCSAG00000016413)	ACMSD (ENSCSAG00000016419)	TMEM163 (ENSCSAG00000016424)	MGAT5 (ENSCSAG00000016433)	NCKAP5 (ENSCSAG00000016447)	LYPD1 (ENSCSAG00000016451)	GPR39 (ENSCSAG00000018643)	SLC35F5 (ENSCSAG00000016458)
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Cebidae	ANCESTRAL SPECIES	11	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Marmoset	MODERN SPECIES	18	ENSCJAG00000012316	ENSCJAG00000052641	LRP1B (ENSCJAG00000012158)	ENSCJAG00000071088	NXPH2 (ENSCJAG00000012152)	SPOPL (ENSCJAG00000041394)	ENSCJAG00000086160	HNMT (ENSCJAG00000012109)	ENSCJAG00000063660	THSD7B (ENSCJAG00000012054)	ENSCJAG00000069911	ENSCJAG00000076335	CXCR4 (ENSCJAG00000012046)	DARS1 (ENSCJAG00000011967)	ENSCJAG00000063781	MCM6 (ENSCJAG00000011898) ##22	ENSCJAG00000084854	LCT (ENSCJAG00000011870)	UBXN4 (ENSCJAG00000011842)	ENSCJAG00000076691	ENSCJAG00000071252	R3HDM1 (ENSCJAG00000011718)	ENSCJAG00000011678	ENSCJAG00000073068	ENSCJAG00000084106	RAB3GAP1 (ENSCJAG00000011643)	ENSCJAG00000086206	MAP3K19 (ENSCJAG00000011631)	ENSCJAG00000085933	CCNT2 (ENSCJAG00000011573)	ACMSD (ENSCJAG00000011557)
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT01020000230615	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00390000002748.j	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000008527.k.a.d	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00910000147097	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Bolivian squirrel monkey	MODERN SPECIES	46	GTDC1 (ENSSBOG00000030737)	ENSSBOG00000023369	ARHGAP15 (ENSSBOG00000027845)	KYNU (ENSSBOG00000029002)	ENSSBOG00000021516	LRP1B (ENSSBOG00000032751)	NXPH2 (ENSSBOG00000035598)	SPOPL (ENSSBOG00000021667)	ENSSBOG00000028590	HNMT (ENSSBOG00000022759)	ENSSBOG00000013560	THSD7B (ENSSBOG00000020495)	CXCR4 (ENSSBOG00000004406)	DARS1 (ENSSBOG00000009265)	ENSSBOG00000005555	MCM6 (ENSSBOG00000020383) ##22	LCT (ENSSBOG00000036144)	UBXN4 (ENSSBOG00000032647)	R3HDM1 (ENSSBOG00000020389)	ZRANB3 (ENSSBOG00000021135)	ENSSBOG00000033347	PLEKHB2 (ENSSBOG00000026866)	ENSSBOG00000024028	FAM168B (ENSSBOG00000021230)	ARHGEF4 (ENSSBOG00000025042)	SMIM39 (ENSSBOG00000021156)	ENSSBOG00000029770	ENSSBOG00000025558	PTPN18 (ENSSBOG00000019619)	IMP4 (ENSSBOG00000025841)	CCDC115 (ENSSBOG00000024051)
Capuchin	MODERN SPECIES	533														CXCR4 (ENSCCAG00000019578)	DARS1 (ENSCCAG00000035686)	MCM6 (ENSCCAG00000025078) ##22	LCT (ENSCCAG00000027878)	UBXN4 (ENSCCAG00000032880)
Mas night monkey	MODERN SPECIES	1330														CXCR4 (ENSANAG00000026522)	DARS1 (ENSANAG00000028134)	MCM6 (ENSANAG00000026277) ##22	LCT (ENSANAG00000010437)	UBXN4 (ENSANAG00000028733)
Tarsier	MODERN SPECIES	4910															DARS (ENSTSYG00000012049)	MCM6 (ENSTSYG00000003201) ##22	LCT (ENSTSYG00000003165)
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c
Lemuriformes_a	ANCESTRAL SPECIES	169										ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949.c
Coquerels sifaka	MODERN SPECIES	466								ENSPCOG00000016661	ENSPCOG00000025193	NXPH2 (ENSPCOG00000001950)	SPOPL (ENSPCOG00000023942)	ENSPCOG00000015638	ENSPCOG00000016824	CXCR4 (ENSPCOG00000024213)	DARS1 (ENSPCOG00000008377)	MCM6 (ENSPCOG00000019502) ##22	LCT (ENSPCOG00000025001)	UBXN4 (ENSPCOG00000023917)	R3HDM1 (ENSPCOG00000012698)	ZRANB3 (ENSPCOG00000003732)	ENSPCOG00000017303	RAB3GAP1 (ENSPCOG00000013566)	MAP3K19 (ENSPCOG00000013448)	CCNT2 (ENSPCOG00000024166)	ACMSD (ENSPCOG00000009868)	TMEM163 (ENSPCOG00000003562)	MGAT5 (ENSPCOG00000019388)	NCKAP5 (ENSPCOG00000015437)	ENSPCOG00000014180	LYPD1 (ENSPCOG00000020233)	GPR39 (ENSPCOG00000023485)
Greater bamboo lemur	MODERN SPECIES	474									NXPH2 (ENSPSMG00000007978)	SPOPL (ENSPSMG00000008065)	HNMT (ENSPSMG00000008118)	THSD7B (ENSPSMG00000008144)	ENSPSMG00000008164	CXCR4 (ENSPSMG00000008189)	DARS1 (ENSPSMG00000008249)	MCM6 (ENSPSMG00000008291) ##22	LCT (ENSPSMG00000008306)	UBXN4 (ENSPSMG00000008351)
Mouse lemur	MODERN SPECIES	30	ENSMICG00000047072	ENSMICG00000039700	DPP10 (ENSMICG00000032720)	ENSMICG00000033065	SLC35F5 (ENSMICG00000010476)	GPR39 (ENSMICG00000031291)	ENSMICG00000017770	LRP1B (ENSMICG00000014855)	ENSMICG00000007371	NXPH2 (ENSMICG00000045401)	ENSMICG00000036028	HNMT (ENSMICG00000042723)	THSD7B (ENSMICG00000047887)	CXCR4 (ENSMICG00000013852)	DARS1 (ENSMICG00000013832)	MCM6 (ENSMICG00000012968) ##22	LCT (ENSMICG00000012949)	UBXN4 (ENSMICG00000012933)	ENSMICG00000014081	ENSMICG00000005900	ZRANB3 (ENSMICG00000013893)	ENSMICG00000027856	RAB3GAP1 (ENSMICG00000013854)	MAP3K19 (ENSMICG00000013841)	CCNT2 (ENSMICG00000044355)	ACMSD (ENSMICG00000013809)	ENSMICG00000043132	TMEM163 (ENSMICG00000000228)	MGAT5 (ENSMICG00000015068)	NCKAP5 (ENSMICG00000035648)	LYPD1 (ENSMICG00000029863)
Bushbaby	MODERN SPECIES	195						ENSOGAG00000026964	ENSOGAG00000034729	ENSOGAG00000005855	NXPH2 (ENSOGAG00000003113)	SPOPL (ENSOGAG00000015187)	HNMT (ENSOGAG00000006550)	THSD7B (ENSOGAG00000017173)	ENSOGAG00000027169	CXCR4 (ENSOGAG00000011319)	DARS1 (ENSOGAG00000005919)	MCM6 (ENSOGAG00000008745) ##22	LCT (ENSOGAG00000002883)	UBXN4 (ENSOGAG00000002877)	R3HDM1 (ENSOGAG00000003136)	ZRANB3 (ENSOGAG00000013307)	RAB3GAP1 (ENSOGAG00000013299)	MAP3K19 (ENSOGAG00000016799)	CCNT2 (ENSOGAG00000016793)	ENSOGAG00000028207	ACMSD (ENSOGAG00000001854)	TMEM163 (ENSOGAG00000016488)	MGAT5 (ENSOGAG00000016482)	NCKAP5 (ENSOGAG00000029035)	LYPD1 (ENSOGAG00000024875)	GPR39 (ENSOGAG00000011357)	SLC35F5 (ENSOGAG00000016620)
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Tree shrew	MODERN SPECIES	4069															ENSTBEG00000009031	MCM6 (ENSTBEG00000008118) ##22	LCT (ENSTBEG00000007168)	ENSTBEG00000006224
Glires	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Lagomorpha	ANCESTRAL SPECIES	12	ENSGT00940000158526	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Pika	MODERN SPECIES	878																MCM6 (ENSOPRG00000006133) ##22	LCT (ENSOPRG00000006115)	UBXN4 (ENSOPRG00000006108)	ENSOPRG00000006072
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00900000141555	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000158526.c.b	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Marmotini	ANCESTRAL SPECIES	2	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00390000016988.a.a.a.b.a.b	ENSGT01050000244848.C.a	ENSGT00950000182891.a.a.b.b	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00940000157345.b.b	ENSGT00390000012929	ENSGT00940000153231.A	ENSGT00940000162860	ENSGT00940000157345.b.a	ENSGT01100000263518.B.a	ENSGT00530000063529.C
Alpin marmot	MODERN SPECIES	5	ACVR2A (ENSMMMG00000021587)	ZEB2 (ENSMMMG00000021492)	GTDC1 (ENSMMMG00000021476)	ENSMMMG00000021461	ARHGAP15 (ENSMMMG00000021442)	KYNU (ENSMMMG00000021410)	LRP1B (ENSMMMG00000021313)	NXPH2 (ENSMMMG00000021251)	SPOPL (ENSMMMG00000021248)	HNMT (ENSMMMG00000021232)	THSD7B (ENSMMMG00000021210)	ENSMMMG00000021196	CXCR4 (ENSMMMG00000021192)	ENSMMMG00000021188	DARS1 (ENSMMMG00000021177)	MCM6 (ENSMMMG00000021164) ##22	LCT (ENSMMMG00000021153)	UBXN4 (ENSMMMG00000021133)	R3HDM1 (ENSMMMG00000021101)	ZRANB3 (ENSMMMG00000021062)	ENSMMMG00000021050	RAB3GAP1 (ENSMMMG00000020992)	MAP3K19 (ENSMMMG00000020969)	CCNT2 (ENSMMMG00000020934)	ACMSD (ENSMMMG00000020928)	ENSMMMG00000020909	ENSMMMG00000020899	IMP4 (ENSMMMG00000020886)	PTPN18 (ENSMMMG00000020871)	ENSMMMG00000020842	GPR148 (ENSMMMG00000020839)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT00390000016988.a.a.a.b.a.b	ENSGT01050000244848.C.a	ENSGT00950000182891.a.a.b.b	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00940000157345.b.b	ENSGT00390000012929	ENSGT00940000153231.A	ENSGT00940000162860	ENSGT00940000157345.b.a	ENSGT01100000263518.B.a	ENSGT00530000063529.C
Squirrel	MODERN SPECIES	69	ACVR2A (ENSSTOG00000025105)	ENSSTOG00000032731	ZEB2 (ENSSTOG00000003811)	GTDC1 (ENSSTOG00000016373)	ARHGAP15 (ENSSTOG00000009312)	KYNU (ENSSTOG00000009286)	LRP1B (ENSSTOG00000002686)	ENSSTOG00000031059	NXPH2 (ENSSTOG00000001587)	SPOPL (ENSSTOG00000022722)	HNMT (ENSSTOG00000010780)	THSD7B (ENSSTOG00000002491)	CXCR4 (ENSSTOG00000006334)	ENSSTOG00000034891	DARS1 (ENSSTOG00000006292)	MCM6 (ENSSTOG00000013639) ##22	LCT (ENSSTOG00000013618)	UBXN4 (ENSSTOG00000007625)	R3HDM1 (ENSSTOG00000007572)	ZRANB3 (ENSSTOG00000010155)	RAB3GAP1 (ENSSTOG00000010563)	MAP3K19 (ENSSTOG00000022671)	ENSSTOG00000033496	CCNT2 (ENSSTOG00000010537)	ACMSD (ENSSTOG00000010532)	ENSSTOG00000033915	CCDC115 (ENSSTOG00000025738)	IMP4 (ENSSTOG00000003373)	ENSSTOG00000008514	ENSSTOG00000024486	AMER3 (ENSSTOG00000033812)
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005003233	ENSSVLG00005003222	ENSSVLG00005003208	ENSSVLG00005003174	GTDC1 (ENSSVLG00005003107)	ARHGAP15 (ENSSVLG00005003035)	KYNU (ENSSVLG00005002948)	ENSSVLG00005002904	LRP1B (ENSSVLG00005002708)	NXPH2 (ENSSVLG00005002646)	SPOPL (ENSSVLG00005002616)	HNMT (ENSSVLG00005002599)	THSD7B (ENSSVLG00005002439)	CXCR4 (ENSSVLG00005002352)	DARS1 (ENSSVLG00005002326)	MCM6 (ENSSVLG00005002280) ##22	LCT (ENSSVLG00005002233)	UBXN4 (ENSSVLG00005002201)	ENSSVLG00005002116	ENSSVLG00005002069	ZRANB3 (ENSSVLG00005002019)	RAB3GAP1 (ENSSVLG00005001809)	ENSSVLG00005001704	MAP3K19 (ENSSVLG00005001601)	CCNT2 (ENSSVLG00005001535)	ACMSD (ENSSVLG00005001482)	ENSSVLG00005001460	TMEM163 (ENSSVLG00005001446)	MGAT5 (ENSSVLG00005001430)	NCKAP5 (ENSSVLG00005001316)	LYPD1 (ENSSVLG00005001165)
Hystricomorpha	DUPLICATION
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b.c ##22
Naked mole-rat female	MODERN SPECIES	27							ENSHGLG00000049789	ENSHGLG00000049661	ENSHGLG00000046792	ENSHGLG00000019219	PLSCR4 (ENSHGLG00000013153)	ENSHGLG00000033860	ENSHGLG00000040890	ENSHGLG00000038284	ENSHGLG00000019213	ENSHGLG00000019244 ##22	ENSHGLG00000021419	ENSHGLG00000049780	ENSHGLG00000042807	ENSHGLG00000040188	ENSHGLG00000043888	ENSHGLG00000048208	ENSHGLG00000017414	ENSHGLG00000032818	ENSHGLG00000011081	ENSHGLG00000002472	ENSHGLG00000035002	ENSHGLG00000046384	CPB1 (ENSHGLG00000011884)	CPA3 (ENSHGLG00000012134)	GYG1 (ENSHGLG00000012311)
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b.d ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b.d ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Hystricomorpha_b	ANCESTRAL SPECIES	67	ENSGT00940000158526	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b.d ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	55					ENSODEG00000008499	ENSODEG00000008677	ENSODEG00000007388	NXPH2 (ENSODEG00000007339)	SPOPL (ENSODEG00000007333)	HNMT (ENSODEG00000007191)	ENSODEG00000019640	THSD7B (ENSODEG00000007694)	ENSODEG00000007226	ENSODEG00000019498	DARS1 (ENSODEG00000007800)	ENSODEG00000007863 ##22	LCT (ENSODEG00000008656)	ENSODEG00000012276	R3HDM1 (ENSODEG00000008607)	ENSODEG00000008027	RAB3GAP1 (ENSODEG00000009115)	MAP3K19 (ENSODEG00000007486)	ENSODEG00000008322	ACMSD (ENSODEG00000007750)	ENSODEG00000019401	TMEM163 (ENSODEG00000011042)	MGAT5 (ENSODEG00000007626)	ENSODEG00000007582	ENSODEG00000007263	LYPD1 (ENSODEG00000006977)	ENSODEG00000006743
Degu	MODERN SPECIES	348																ENSODEG00000001802 ##22	ENSODEG00000001780	ENSODEG00000001768	CTSG (ENSODEG00000001755)	ENSODEG00000001723	CMA1 (ENSODEG00000001705)	SDR39U1 (ENSODEG00000001678)	KHNYN (ENSODEG00000001663)	CBLN3 (ENSODEG00000001635)	NYNRIN (ENSODEG00000001595)	NFATC4 (ENSODEG00000003378)	ADCY4 (ENSODEG00000003204)	ENSODEG00000019093	CIDEB (ENSODEG00000003126)	NOP9 (ENSODEG00000003072)	DHRS1 (ENSODEG00000003050)
Degu	MODERN SPECIES	239														ENSODEG00000000793	ENSODEG00000000780	ENSODEG00000000691 ##22	ENSODEG00000000671	ENSODEG00000000638	ENSODEG00000000628	ENSODEG00000018571	ENSODEG00000000615
Long-tailed chinchilla	MODERN SPECIES	147	EPC2 (ENSCLAG00000001768)	MBD5 (ENSCLAG00000001690)	ORC4 (ENSCLAG00000002811)	ACVR2A (ENSCLAG00000002708)	ZEB2 (ENSCLAG00000002230)	GTDC1 (ENSCLAG00000007819)	ARHGAP15 (ENSCLAG00000006756)	KYNU (ENSCLAG00000005935)	LRP1B (ENSCLAG00000002036)	NXPH2 (ENSCLAG00000017455)	SPOPL (ENSCLAG00000001710)	HNMT (ENSCLAG00000001523)	THSD7B (ENSCLAG00000001388)	CXCR4 (ENSCLAG00000002279)	DARS1 (ENSCLAG00000006355)	MCM6 (ENSCLAG00000005315) ##22	LCT (ENSCLAG00000005005)	UBXN4 (ENSCLAG00000004332)	R3HDM1 (ENSCLAG00000007962)	ZRANB3 (ENSCLAG00000006849)	RAB3GAP1 (ENSCLAG00000002438)	MAP3K19 (ENSCLAG00000002067)	CCNT2 (ENSCLAG00000004236)	ACMSD (ENSCLAG00000003941)	TMEM163 (ENSCLAG00000003859)	MGAT5 (ENSCLAG00000003416)	NCKAP5 (ENSCLAG00000002972)	LYPD1 (ENSCLAG00000002904)	GPR39 (ENSCLAG00000002776)
Guinea pig	MODERN SPECIES	3	ACVR2A (ENSCPOG00000008575)	ZEB2 (ENSCPOG00000004182)	ENSCPOG00000035797	GTDC1 (ENSCPOG00000007030)	ARHGAP15 (ENSCPOG00000007467)	KYNU (ENSCPOG00000011220)	ENSCPOG00000021859	ENSCPOG00000038865	LRP1B (ENSCPOG00000014122)	NXPH2 (ENSCPOG00000003323)	SPOPL (ENSCPOG00000006344)	HNMT (ENSCPOG00000002449)	THSD7B (ENSCPOG00000001976)	CXCR4 (ENSCPOG00000014249)	DARS1 (ENSCPOG00000004614)	MCM6 (ENSCPOG00000004609) ##22	ENSCPOG00000037215	UBXN4 (ENSCPOG00000011377)	R3HDM1 (ENSCPOG00000012784)	ENSCPOG00000010385	RAB3GAP1 (ENSCPOG00000008653)	MAP3K19 (ENSCPOG00000004758)	ENSCPOG00000023350	CCNT2 (ENSCPOG00000003960)	ACMSD (ENSCPOG00000003832)	TMEM163 (ENSCPOG00000004944)	MGAT5 (ENSCPOG00000004942)	NCKAP5 (ENSCPOG00000011594)	LYPD1 (ENSCPOG00000037678)	ENSCPOG00000020207	GPR39 (ENSCPOG00000004139)
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000047841	ENSHGLG00000015109	ENSHGLG00000015539	ENSHGLG00000035617	ENSHGLG00000039209	ENSHGLG00000009497	ENSHGLG00000046944	ENSHGLG00000038812	ENSHGLG00000005400	ENSHGLG00000042034	ENSHGLG00000008464	ENSHGLG00000047777	ENSHGLG00000014945	ENSHGLG00000021331	ENSHGLG00000014798	ENSHGLG00000011684 ##22	LCT (ENSHGLG00000011021)	UBXN4 (ENSHGLG00000009780)	R3HDM1 (ENSHGLG00000015718)	ZRANB3 (ENSHGLG00000015976)	ENSHGLG00000047059	RAB3GAP1 (ENSHGLG00000015354)	MAP3K19 (ENSHGLG00000009472)	CCNT2 (ENSHGLG00000013595)	TMEM163 (ENSHGLG00000008943)	ENSHGLG00000032858	ACMSD (ENSHGLG00000009833)	ENSHGLG00000045914	MGAT5 (ENSHGLG00000005155)	NCKAP5 (ENSHGLG00000008645)	LYPD1 (ENSHGLG00000033205)
Rodentia_B	ANCESTRAL SPECIES	41													ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Myomorpha	ANCESTRAL SPECIES	54													ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Muroidea	ANCESTRAL SPECIES	64													ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Prairie vole	MODERN SPECIES	14	Slc35f5 (ENSMOCG00000020193)	Gpr39 (ENSMOCG00000014214)	Lypd1 (ENSMOCG00000012749)	ENSMOCG00000015715	Mgat5 (ENSMOCG00000022128)	Tmem163 (ENSMOCG00000022463)	Acmsd (ENSMOCG00000014467)	Ccnt2 (ENSMOCG00000002940)	Map3k19 (ENSMOCG00000013038)	Rab3gap1 (ENSMOCG00000008132)	ENSMOCG00000021535	Thsd7b (ENSMOCG00000013052)	ENSMOCG00000022887	Cxcr4 (ENSMOCG00000002883)	Dars (ENSMOCG00000021532)	Mcm6 (ENSMOCG00000019390) ##22	ENSMOCG00000022901	ENSMOCG00000022321	ENSMOCG00000014114	Ubxn4 (ENSMOCG00000005911)	ENSMOCG00000019833
Northern American deer mouse	MODERN SPECIES	2	Fcmr (ENSPEMG00000022804)	Pigr (ENSPEMG00000011366)	Fcamr (ENSPEMG00000011149)	AA986860 (ENSPEMG00000005057)	Yod1 (ENSPEMG00000025445)	Pfkfb2 (ENSPEMG00000001133)	ENSPEMG00000029381	ENSPEMG00000023940	Zp3r (ENSPEMG00000017253)	ENSPEMG00000002191	Thsd7b (ENSPEMG00000025817)	Cxcr4 (ENSPEMG00000019983)	Dars (ENSPEMG00000019511)	ENSPEMG00000019350	ENSPEMG00000024397	Mcm6 (ENSPEMG00000020021) ##22	Lct (ENSPEMG00000019494)	Ubxn4 (ENSPEMG00000010932)	R3hdm1 (ENSPEMG00000015187)	Zranb3 (ENSPEMG00000020506)	Rab3gap1 (ENSPEMG00000021375)	Map3k19 (ENSPEMG00000031034)	Ccnt2 (ENSPEMG00000020594)	Acmsd (ENSPEMG00000022800)	Tmem163 (ENSPEMG00000026492)	Mgat5 (ENSPEMG00000011505)	Nckap5 (ENSPEMG00000011621)	Lypd1 (ENSPEMG00000024961)	Gpr39 (ENSPEMG00000018261)	Slc35f5 (ENSPEMG00000016352)	Actr3 (ENSPEMG00000013664)
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000183124.C.b.b.b	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Chinese hamster chok1gshd	MODERN SPECIES	2	Il24 (ENSCGRG00001024134)	Fcmr (ENSCGRG00001021694)	Pigr (ENSCGRG00001013101)	Fcamr (ENSCGRG00001020858)	ENSCGRG00001022734	AA986860 (ENSCGRG00001023279)	Yod1 (ENSCGRG00001024029)	Pfkfb2 (ENSCGRG00001012980)	C4bp (ENSCGRG00001011270)	Zp3r (ENSCGRG00001013800)	ENSCGRG00001013335	ENSCGRG00001014580	Thsd7b (ENSCGRG00001018236)	Cxcr4 (ENSCGRG00001020258)	Dars (ENSCGRG00001022990)	Mcm6 (ENSCGRG00001020597) ##22	Lct (ENSCGRG00001023254)	Ubxn4 (ENSCGRG00001000942)	R3hdm1 (ENSCGRG00001012357)	ENSCGRG00001006066	Zranb3 (ENSCGRG00001000424)	Rab3gap1 (ENSCGRG00001021319)	Map3k19 (ENSCGRG00001013377)	Ccnt2 (ENSCGRG00001018905)	Acmsd (ENSCGRG00001020813)	ENSCGRG00001024550	Tmem163 (ENSCGRG00001020380)	MGAT5 (ENSCGRG00001021442)	ENSCGRG00001004696	Nckap5 (ENSCGRG00001017969)	Lypd1 (ENSCGRG00001015904)
Golden Hamster	MODERN SPECIES	711	Il20 (ENSMAUG00000013324)	Il24 (ENSMAUG00000010477)	Fcmr (ENSMAUG00000012462)	Pigr (ENSMAUG00000013137)	Fcamr (ENSMAUG00000014341)	AA986860 (ENSMAUG00000012446)	Yod1 (ENSMAUG00000013895)	Pfkfb2 (ENSMAUG00000013673)	C4bp (ENSMAUG00000016717)	Zp3r (ENSMAUG00000016071)	ENSMAUG00000014083	ENSMAUG00000014678 ##27	Thsd7b (ENSMAUG00000014902)	Cxcr4 (ENSMAUG00000017285)	Dars (ENSMAUG00000017400)	Mcm6 (ENSMAUG00000000085) ##22	Lct (ENSMAUG00000001383)	Ubxn4 (ENSMAUG00000002324)	R3hdm1 (ENSMAUG00000010315)	Zranb3 (ENSMAUG00000002029)	Rab3gap1 (ENSMAUG00000004952)	ENSMAUG00000016085	Map3k19 (ENSMAUG00000010654)	Ccnt2 (ENSMAUG00000009688)	Acmsd (ENSMAUG00000011487)	Tmem163 (ENSMAUG00000012260)	Mgat5 (ENSMAUG00000016950)	Nckap5 (ENSMAUG00000014045)	Gpr39 (ENSMAUG00000013127)	Slc35f5 (ENSMAUG00000011137)	ENSMAUG00000014128
Murinae	ANCESTRAL SPECIES	11	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Mus	ANCESTRAL SPECIES	5	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Mus_B	ANCESTRAL SPECIES	7	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307.c	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Mouse	MODERN SPECIES		Il20 (ENSMUSG00000026416)	Il24 (ENSMUSG00000026420)	Fcmr (ENSMUSG00000042474)	Pigr (ENSMUSG00000026417)	Fcamr (ENSMUSG00000026415)	AA986860 (ENSMUSG00000042510)	Yod1 (ENSMUSG00000046404)	Pfkfb2 (ENSMUSG00000026409)	C4bp (ENSMUSG00000026405)	Zp3r (ENSMUSG00000042554)	Cd55 (ENSMUSG00000026399)	Cd55b (ENSMUSG00000026401)	Thsd7b (ENSMUSG00000042581)	Cxcr4 (ENSMUSG00000045382)	Dars (ENSMUSG00000026356)	Mcm6 (ENSMUSG00000026355) ##22	Lct (ENSMUSG00000026354)	Ubxn4 (ENSMUSG00000026353)	R3hdm1 (ENSMUSG00000056211)	Zranb3 (ENSMUSG00000036086)	Rab3gap1 (ENSMUSG00000036104)	Map3k19 (ENSMUSG00000051590)	Ccnt2 (ENSMUSG00000026349)	Acmsd (ENSMUSG00000026348)	Tmem163 (ENSMUSG00000026347)	Mgat5 (ENSMUSG00000036155)	Nckap5 (ENSMUSG00000049690)	Lypd1 (ENSMUSG00000026344)	Gpr39 (ENSMUSG00000026343)	Slc35f5 (ENSMUSG00000026342)	Actr3 (ENSMUSG00000026341)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00950000183124.C.b.b.a	ENSGT00950000183124.C.b.a	ENSGT00940000162282	ENSGT00940000161667	ENSGT00950000182977.A	ENSGT00390000017874	ENSGT00390000009989	ENSGT00950000182835.d.a	ENSGT00940000163065	ENSGT00940000154640.a.a.a	ENSGT00940000154640.b	ENSGT00940000162307.c	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01030000235139	ENSGT01100000263518.A.a.b	ENSGT00390000005949
spretus	MODERN SPECIES		Il19 (MGP_SPRETEiJ_G0015368)	Il20 (MGP_SPRETEiJ_G0015367)	Il24 (MGP_SPRETEiJ_G0015366)	Fcmr (MGP_SPRETEiJ_G0015365)	Pigr (MGP_SPRETEiJ_G0015364)	Fcamr (MGP_SPRETEiJ_G0015363)	AA986860 (MGP_SPRETEiJ_G0015362)	Yod1 (MGP_SPRETEiJ_G0015361)	MGP_SPRETEiJ_G0015360	MGP_SPRETEiJ_G0015359	C4bp (MGP_SPRETEiJ_G0015358)	Zp3r (MGP_SPRETEiJ_G0015357)	Thsd7b (MGP_SPRETEiJ_G0015356)	Cxcr4 (MGP_SPRETEiJ_G0015355)	Dars (MGP_SPRETEiJ_G0015354)	Mcm6 (MGP_SPRETEiJ_G0015353) ##22	MGP_SPRETEiJ_G0015352	Ubxn4 (MGP_SPRETEiJ_G0015351)	R3hdm1 (MGP_SPRETEiJ_G0015350)	Zranb3 (MGP_SPRETEiJ_G0015349)	Rab3gap1 (MGP_SPRETEiJ_G0015348)	Map3k19 (MGP_SPRETEiJ_G0015347)	Ccnt2 (MGP_SPRETEiJ_G0015346)	Acmsd (MGP_SPRETEiJ_G0015345)	Tmem163 (MGP_SPRETEiJ_G0015344)	Mgat5 (MGP_SPRETEiJ_G0015343)	Nckap5 (MGP_SPRETEiJ_G0015342)	Lypd1 (MGP_SPRETEiJ_G0015341)	Gpr39 (MGP_SPRETEiJ_G0015340)	Slc35f5 (MGP_SPRETEiJ_G0015339)	Actr3 (MGP_SPRETEiJ_G0015338)
Steppe mouse	MODERN SPECIES	226	Il20 (ENSMSIG00000024938)	Il24 (ENSMSIG00000024957)	Fcmr (ENSMSIG00000024969)	Pigr (ENSMSIG00000024992)	Fcamr (ENSMSIG00000025013)	AA986860 (ENSMSIG00000025040)	Yod1 (ENSMSIG00000025044)	Pfkfb2 (ENSMSIG00000025048)	ENSMSIG00000025240	C4bp (ENSMSIG00000025264)	Zp3r (ENSMSIG00000025284)	ENSMSIG00000025327	Thsd7b (ENSMSIG00000025361)	Cxcr4 (ENSMSIG00000025594)	Dars (ENSMSIG00000025659)	Mcm6 (ENSMSIG00000025697) ##22	Lct (ENSMSIG00000025747)	Ubxn4 (ENSMSIG00000025769)	R3hdm1 (ENSMSIG00000025791)	Zranb3 (ENSMSIG00000025901)	ENSMSIG00000025963	Rab3gap1 (ENSMSIG00000025984)	Map3k19 (ENSMSIG00000026051)	Ccnt2 (ENSMSIG00000026074)	Acmsd (ENSMSIG00000026123)	Tmem163 (ENSMSIG00000026138)	Mgat5 (ENSMSIG00000026163)	Nckap5 (ENSMSIG00000000300)	ENSMSIG00000001164	ENSMSIG00000001196	Gpr39 (ENSMSIG00000001206)
Ryukyu mouse	MODERN SPECIES		Il24 (MGP_CAROLIEiJ_G0014562)	Fcmr (MGP_CAROLIEiJ_G0014561)	Pigr (MGP_CAROLIEiJ_G0014560)	Fcamr (MGP_CAROLIEiJ_G0014559)	AA986860 (MGP_CAROLIEiJ_G0014558)	Yod1 (MGP_CAROLIEiJ_G0014557)	MGP_CAROLIEiJ_G0014556	MGP_CAROLIEiJ_G0014555	C4bp (MGP_CAROLIEiJ_G0014554)	Zp3r (MGP_CAROLIEiJ_G0014553)	MGP_CAROLIEiJ_G0014552	MGP_CAROLIEiJ_G0014551	MGP_CAROLIEiJ_G0014550	Cxcr4 (MGP_CAROLIEiJ_G0014549)	Dars (MGP_CAROLIEiJ_G0014547)	Mcm6 (MGP_CAROLIEiJ_G0014546) ##22	Lct (MGP_CAROLIEiJ_G0014545)	Ubxn4 (MGP_CAROLIEiJ_G0014544)	R3hdm1 (MGP_CAROLIEiJ_G0014543)	Zranb3 (MGP_CAROLIEiJ_G0014542)	Rab3gap1 (MGP_CAROLIEiJ_G0014541)	Map3k19 (MGP_CAROLIEiJ_G0014540)	Ccnt2 (MGP_CAROLIEiJ_G0014539)	Acmsd (MGP_CAROLIEiJ_G0014538)	Tmem163 (MGP_CAROLIEiJ_G0014537)	Mgat5 (MGP_CAROLIEiJ_G0014536)	Nckap5 (MGP_CAROLIEiJ_G0014535)	Lypd1 (MGP_CAROLIEiJ_G0014534)	Gpr39 (MGP_CAROLIEiJ_G0014533)	Slc35f5 (MGP_CAROLIEiJ_G0014532)	Actr3 (MGP_CAROLIEiJ_G0014531)
Shrew mouse	MODERN SPECIES	18	Il20 (MGP_PahariEiJ_G0027797)	Il24 (MGP_PahariEiJ_G0027796)	Fcmr (MGP_PahariEiJ_G0027795)	Pigr (MGP_PahariEiJ_G0027794)	Fcamr (MGP_PahariEiJ_G0027793)	AA986860 (MGP_PahariEiJ_G0027792)	Yod1 (MGP_PahariEiJ_G0027791)	MGP_PahariEiJ_G0027790	MGP_PahariEiJ_G0027789	Zp3r (MGP_PahariEiJ_G0027788)	MGP_PahariEiJ_G0027787	MGP_PahariEiJ_G0027786	Thsd7b (MGP_PahariEiJ_G0027785)	Cxcr4 (MGP_PahariEiJ_G0027784)	Dars (MGP_PahariEiJ_G0027783)	Mcm6 (MGP_PahariEiJ_G0027782) ##22	Lct (MGP_PahariEiJ_G0027781)	Ubxn4 (MGP_PahariEiJ_G0027780)	R3hdm1 (MGP_PahariEiJ_G0027779)	Zranb3 (MGP_PahariEiJ_G0027778)	Rab3gap1 (MGP_PahariEiJ_G0027777)	MGP_PahariEiJ_G0027776	Ccnt2 (MGP_PahariEiJ_G0027775)	Acmsd (MGP_PahariEiJ_G0027774)	Tmem163 (MGP_PahariEiJ_G0027773)	Mgat5 (MGP_PahariEiJ_G0027772)	Nckap5 (MGP_PahariEiJ_G0027771)	Lypd1 (MGP_PahariEiJ_G0027770)	Gpr39 (MGP_PahariEiJ_G0027769)	Slc35f5 (MGP_PahariEiJ_G0027768)	Actr3 (MGP_PahariEiJ_G0027767)
Rat	MODERN SPECIES	4	Il24 (ENSRNOG00000004470)	Fcmr (ENSRNOG00000004441)	Pigr (ENSRNOG00000004405)	Fcamr (ENSRNOG00000004393)	C13h1orf116 (ENSRNOG00000004341)	Yod1 (ENSRNOG00000025704)	Pfkfb2 (ENSRNOG00000004162)	C4bpb (ENSRNOG00000004125)	Lsm6 (ENSRNOG00000030374)	C4bpa (ENSRNOG00000004062)	Zp3r (ENSRNOG00000025862)	Cd55 (ENSRNOG00000003927)	Thsd7b (ENSRNOG00000003878)	Cxcr4 (ENSRNOG00000003866)	Dars1 (ENSRNOG00000003743)	Mcm6 (ENSRNOG00000003703) ##22	Lct (ENSRNOG00000003681)	Ubxn4 (ENSRNOG00000003625)	R3hdm1 (ENSRNOG00000004099)	Zranb3 (ENSRNOG00000003979)	Rab3gap1 (ENSRNOG00000003953)	Map3k19 (ENSRNOG00000003952)	Ccnt2 (ENSRNOG00000017113)	Acmsd (ENSRNOG00000003884)	Tmem163 (ENSRNOG00000003769)	Mgat5 (ENSRNOG00000003614)	ENSRNOG00000066401	tuba1c-ps1 (ENSRNOG00000070079)	Nckap5 (ENSRNOG00000021553)	Lypd1 (ENSRNOG00000003453)	Gpr39 (ENSRNOG00000021586)
Upper Galilee mountains blind mole rat	MODERN SPECIES	851		Ube3a (ENSNGAG00000007229)	Atp10a (ENSNGAG00000011847)	Gabrb3 (ENSNGAG00000005760)	Gabra5 (ENSNGAG00000017019)	Gabrg3 (ENSNGAG00000010399)	Oca2 (ENSNGAG00000006386)	Herc2 (ENSNGAG00000013763)	Nipa1 (ENSNGAG00000018071)	Nipa2 (ENSNGAG00000020274)	Cyfip1 (ENSNGAG00000002534)	Tubgcp5 (ENSNGAG00000017205)	Thsd7b (ENSNGAG00000001511)	Cxcr4 (ENSNGAG00000002679)	ENSNGAG00000010888	Mcm6 (ENSNGAG00000014663) ##22	Lct (ENSNGAG00000018139)	Ubxn4 (ENSNGAG00000003296)
Lesser Egyptian jerboa	MODERN SPECIES	150												ENSJJAG00000013327	Thsd7b (ENSJJAG00000016026)	Cxcr4 (ENSJJAG00000005784)	Dars (ENSJJAG00000009396)	Mcm6 (ENSJJAG00000010609) ##22	ENSJJAG00000013167	Ubxn4 (ENSJJAG00000013631)	ENSJJAG00000017211	ENSJJAG00000018208	ENSJJAG00000018858	Rab3gap1 (ENSJJAG00000021102)	Map3k19 (ENSJJAG00000004245)	ENSJJAG00000014495	Acmsd (ENSJJAG00000014846)	Tmem163 (ENSJJAG00000015561)	Mgat5 (ENSJJAG00000016103)	ENSJJAG00000003717	ENSJJAG00000008360	Kif5b (ENSJJAG00000010864)	ENSJJAG00000014119
Kangaroo rat	MODERN SPECIES	452													ENSDORG00000026134	Cxcr4 (ENSDORG00000014745)	Dars (ENSDORG00000013479)	Mcm6 (ENSDORG00000013081) ##22	Lct (ENSDORG00000013078)	Ubxn4 (ENSDORG00000012991)	ENSDORG00000002670	ENSDORG00000027689	ENSDORG00000004211	Rab3gap1 (ENSDORG00000007961)	Map3k19 (ENSDORG00000023534)	ENSDORG00000026985	Acmsd (ENSDORG00000006096)	Tmem163 (ENSDORG00000015004)	Mgat5 (ENSDORG00000015002)	ENSDORG00000026573	ENSDORG00000030244	ENSDORG00000001242	Gpr39 (ENSDORG00000001240)
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00900000142862	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949	ENSGT00940000155065
Elephant	MODERN SPECIES	301	ORC4 (ENSLAFG00000002631)	ACVR2A (ENSLAFG00000002628)	ENSLAFG00000032780	ZEB2 (ENSLAFG00000008960)	GTDC1 (ENSLAFG00000010261)	ARHGAP15 (ENSLAFG00000006748)	KYNU (ENSLAFG00000002172)	ENSLAFG00000029177	LRP1B (ENSLAFG00000014282)	NXPH2 (ENSLAFG00000011361)	SPOPL (ENSLAFG00000001640)	HNMT (ENSLAFG00000010262)	THSD7B (ENSLAFG00000010588)	CXCR4 (ENSLAFG00000006285)	DARS1 (ENSLAFG00000015092)	MCM6 (ENSLAFG00000009089) ##22	LCT (ENSLAFG00000009081)	UBXN4 (ENSLAFG00000009074)	R3HDM1 (ENSLAFG00000009065)	ZRANB3 (ENSLAFG00000015733)	RAB3GAP1 (ENSLAFG00000012024)	MAP3K19 (ENSLAFG00000008034)	CCNT2 (ENSLAFG00000008029)	ACMSD (ENSLAFG00000008025)	TMEM163 (ENSLAFG00000006542)	MGAT5 (ENSLAFG00000016247)	NCKAP5 (ENSLAFG00000014359)	LYPD1 (ENSLAFG00000020596)	ENSLAFG00000026153	GPR39 (ENSLAFG00000004083)	SLC35F5 (ENSLAFG00000006974)
Hyrax	MODERN SPECIES	3292																MCM6 (ENSPCAG00000016883) ##22	LCT (ENSPCAG00000016814)	UBXN4 (ENSPCAG00000016763)
Tenrec	MODERN SPECIES	2823																MCM6 (ENSETEG00000005803) ##22
Xenarthra	ANCESTRAL SPECIES	274													ENSGT00940000159262.e	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a
Armadillo	MODERN SPECIES	4110												ENSDNOG00000047256	ENSDNOG00000019824	CXCR4 (ENSDNOG00000008947)	DARS1 (ENSDNOG00000017874)	MCM6 (ENSDNOG00000007966) ##22	LCT (ENSDNOG00000016729)	UBXN4 (ENSDNOG00000033460)	ENSDNOG00000031666	R3HDM1 (ENSDNOG00000000771)	ZRANB3 (ENSDNOG00000013613)	RAB3GAP1 (ENSDNOG00000010284)	MAP3K19 (ENSDNOG00000023934)	CCNT2 (ENSDNOG00000016858)	ACMSD (ENSDNOG00000044611)	TMEM163 (ENSDNOG00000000647)	ENSDNOG00000037604	MGAT5 (ENSDNOG00000012857)
Sloth	MODERN SPECIES	7334																MCM6 (ENSCHOG00000007458) ##22
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000017405.j	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000017405.j	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Diprotodontia	ANCESTRAL SPECIES	40	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000017405.j	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
Diprotodontia_a	ANCESTRAL SPECIES	39	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00390000017405.j	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000166747	ENSGT00940000155324	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT00530000063607.b	ENSGT00390000002215	ENSGT01100000263518.A.a.b	ENSGT00390000005949
koala	MODERN SPECIES	136									NXPH2 (ENSPCIG00000009717)	SPOPL (ENSPCIG00000009718)	ENSPCIG00000028189	HNMT (ENSPCIG00000002244)	THSD7B (ENSPCIG00000023799)	CXCR4 (ENSPCIG00000006829)	DARS1 (ENSPCIG00000006838)	MCM6 (ENSPCIG00000006849) ##22	ENSPCIG00000006860	ENSPCIG00000034112	UBXN4 (ENSPCIG00000006935)	R3HDM1 (ENSPCIG00000002491)	ZRANB3 (ENSPCIG00000002444)	RAB3GAP1 (ENSPCIG00000002406)	ENSPCIG00000002384	CCNT2 (ENSPCIG00000002354)	ACMSD (ENSPCIG00000002314)	TMEM163 (ENSPCIG00000002266)	MGAT5 (ENSPCIG00000000463)	NCKAP5 (ENSPCIG00000024443)	LYPD1 (ENSPCIG00000024444)	ENSPCIG00000024445	ENSPCIG00000019348
Common wonbat	MODERN SPECIES	1052	ORC4 (ENSVURG00010005361)	ACVR2A (ENSVURG00010005383)	ZEB2 (ENSVURG00010005459)	GTDC1 (ENSVURG00010005548)	ARHGAP15 (ENSVURG00010005719)	KYNU (ENSVURG00010005735)	LRP1B (ENSVURG00010005875)	ENSVURG00010006058	ENSVURG00010006068	NXPH2 (ENSVURG00010006116)	SPOPL (ENSVURG00010006130)	HNMT (ENSVURG00010006155)	THSD7B (ENSVURG00010006259)	CXCR4 (ENSVURG00010006950)	DARS1 (ENSVURG00010006955)	MCM6 (ENSVURG00010006973) ##22	ENSVURG00010006984	UBXN4 (ENSVURG00010006987)	R3HDM1 (ENSVURG00010007024)	ZRANB3 (ENSVURG00010007305)	RAB3GAP1 (ENSVURG00010007322)	ENSVURG00010007369	CCNT2 (ENSVURG00010007382)	ACMSD (ENSVURG00010007395)	TMEM163 (ENSVURG00010007413)	MGAT5 (ENSVURG00010007438)	ENSVURG00010007490	NCKAP5 (ENSVURG00010007509)	ENSVURG00010007522	ENSVURG00010007526	ENSVURG00010007531
Wallaby	MODERN SPECIES	9835																MCM6 (ENSMEUG00000010932) ##22
Tasmanian devil	MODERN SPECIES	2	ORC4 (ENSSHAG00000010772)	ACVR2A (ENSSHAG00000010152)	ZEB2 (ENSSHAG00000016692)	GTDC1 (ENSSHAG00000015344)	ARHGAP15 (ENSSHAG00000010666)	KYNU (ENSSHAG00000009141)	LRP1B (ENSSHAG00000004225)	ENSSHAG00000025518	ENSSHAG00000031146	NXPH2 (ENSSHAG00000024763)	SPOPL (ENSSHAG00000014908)	HNMT (ENSSHAG00000030767)	THSD7B (ENSSHAG00000026453)	CXCR4 (ENSSHAG00000008142)	DARS1 (ENSSHAG00000001175)	MCM6 (ENSSHAG00000000346) ##22	LCT (ENSSHAG00000017319)	ENSSHAG00000017244	R3HDM1 (ENSSHAG00000016999)	ZRANB3 (ENSSHAG00000016465)	RAB3GAP1 (ENSSHAG00000016199)	ENSSHAG00000015928	CCNT2 (ENSSHAG00000015774)	ACMSD (ENSSHAG00000025004)	TMEM163 (ENSSHAG00000014154)	MGAT5 (ENSSHAG00000013191)	NCKAP5 (ENSSHAG00000009085)	ENSSHAG00000008832	ENSSHAG00000024127	ENSSHAG00000002800	ENSSHAG00000013117
Opossum	MODERN SPECIES	3	ARHGAP15 (ENSMODG00000003016)	KYNU (ENSMODG00000002997)	ENSMODG00000042134	LRP1B (ENSMODG00000002847)	ENSMODG00000050463	ENSMODG00000043501	NXPH2 (ENSMODG00000001201)	SPOPL (ENSMODG00000001195)	ENSMODG00000027661	ENSMODG00000036842	THSD7B (ENSMODG00000001131)	ENSMODG00000047561	ENSMODG00000042094	CXCR4 (ENSMODG00000040906)	DARS1 (ENSMODG00000001056)	MCM6 (ENSMODG00000000989) ##22	ENSMODG00000044474	ENSMODG00000051171	ENSMODG00000000972	ENSMODG00000000944	R3HDM1 (ENSMODG00000000923)	ZRANB3 (ENSMODG00000000848)	ENSMODG00000038786	RAB3GAP1 (ENSMODG00000000835)	ENSMODG00000000785	CCNT2 (ENSMODG00000000727)	ACMSD (ENSMODG00000000715)	ENSMODG00000024415	TMEM163 (ENSMODG00000000704)	MGAT5 (ENSMODG00000000690)	ENSMODG00000039758
Platypus	MODERN SPECIES	20	ORC4 (ENSOANG00000008383)	ACVR2A (ENSOANG00000008384)	ZEB2 (ENSOANG00000011947)	GTDC1 (ENSOANG00000011982)	ARHGAP15 (ENSOANG00000011983)	KYNU (ENSOANG00000045440)	LRP1B (ENSOANG00000007998)	NXPH2 (ENSOANG00000007997)	SPOPL (ENSOANG00000050049)	HNMT (ENSOANG00000007995)	ENSOANG00000048355	THSD7B (ENSOANG00000007994)	ENSOANG00000041192	CXCR4 (ENSOANG00000007993)	DARS1 (ENSOANG00000007989)	MCM6 (ENSOANG00000007988) ##22	LCT (ENSOANG00000007555)	ENSOANG00000007554	R3HDM1 (ENSOANG00000007987)	ZRANB3 (ENSOANG00000007986)	RAB3GAP1 (ENSOANG00000007985)	CCNT2 (ENSOANG00000002760)	ENSOANG00000032812	ACMSD (ENSOANG00000012396)	ENSOANG00000036200	MGAT5 (ENSOANG00000007291)
Anura	ANCESTRAL SPECIES	7	ENSGT00940000158526	ENSGT00530000064137.a.b	ENSGT00390000016542	ENSGT00940000157233	ENSGT00950000183208.A.c.a	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.b	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000155324	ENSGT00940000170936	ENSGT00940000172822	ENSGT00940000160205	ENSGT00940000156095	ENSGT00940000158559	ENSGT00390000006705	ENSGT00940000160383	ENSGT00940000155759	ENSGT00490000043417	ENSGT00390000001170	ENSGT00940000153470.a.a.a.a	ENSGT01030000234859	ENSGT00940000164909	ENSGT00940000159765
Frog	MODERN SPECIES	9	ENSXETG00000047564	zeb2 (ENSXETG00000000237)	gtdc1 (ENSXETG00000000254)	arhgap15 (ENSXETG00000037989)	kynu (ENSXETG00000032399)	ENSXETG00000039635	ENSXETG00000040881	LRP1B (ENSXETG00000035383)	ENSXETG00000043969	rbm38 (ENSXETG00000001304)	spopl (ENSXETG00000001305)	hnmt (ENSXETG00000014875)	thsd7b (ENSXETG00000014878)	cxcr4 (ENSXETG00000041940)	dars1 (ENSXETG00000025033)	mcm6 (ENSXETG00000014891) ##22	ENSXETG00000034493	ENSXETG00000025031	tmbim1 (ENSXETG00000014916)	pnkd (ENSXETG00000014931)	catip (ENSXETG00000014934)	XB5731801 [provisional] (ENSXETG00000025029)	slc11a1 (ENSXETG00000014937)	ctdsp1 (ENSXETG00000041437)	vil1 (ENSXETG00000014965)	usp37 (ENSXETG00000014977)	cnot9 (ENSXETG00000014984)	plcd4 (ENSXETG00000013830)	znf142 (ENSXETG00000035207)	bcs1l (ENSXETG00000013844)	cyp27a1.3 (ENSXETG00000039601)
Leishan spiny toad	MODERN SPECIES	10	NXPH2 (ENSLLEG00000007302)	SPOPL (ENSLLEG00000007173)	ENSLLEG00000007135	ENSLLEG00000006745	ENSLLEG00000006667	ENSLLEG00000006634	ENSLLEG00000006619	ENSLLEG00000006605	ENSLLEG00000006589	THSD7B (ENSLLEG00000006069)	ENSLLEG00000006025	ENSLLEG00000005977	ENSLLEG00000005969	CXCR4 (ENSLLEG00000005950)	DARS1 (ENSLLEG00000005656)	MCM6 (ENSLLEG00000030626) ##22	LCT (ENSLLEG00000030441)	ENSLLEG00000030380	ENSLLEG00000030373	R3HDM1 (ENSLLEG00000030345)	ZRANB3 (ENSLLEG00000030091)	RAB3GAP1 (ENSLLEG00000029859)	MAP3K19 (ENSLLEG00000029785)	CCNT2 (ENSLLEG00000029756)	ENSLLEG00000029746	ACMSD (ENSLLEG00000029662)	TMEM163 (ENSLLEG00000029607)	MGAT5 (ENSLLEG00000029574)	ENSLLEG00000029562	ENSLLEG00000027958	ENSLLEG00000027727
Coelacanth	MODERN SPECIES	1510														CXCR4 (ENSLACG00000011277)	DARS1 (ENSLACG00000009996)	MCM6 (ENSLACG00000009292) ##22	LCT (ENSLACG00000008371)	UBXN4 (ENSLACG00000008040)	ENSLACG00000007983	R3HDM1 (ENSLACG00000005334)	ENSLACG00000003817
Actinopterygii	ANCESTRAL SPECIES		ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a	ENSGT00940000181625	ENSGT00940000157521.b	ENSGT00940000167103	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000181222	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000154610.e.a	ENSGT00940000158414	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562
Reedfish	MODERN SPECIES	16	ENSECRG00000010038	arhgap15 (ENSECRG00000010022)	KYNU (ENSECRG00000009999)	ENSECRG00000009992	ENSECRG00000009987	ENSECRG00000009984	LRP1B (ENSECRG00000009175)	ENSECRG00000008792	ENSECRG00000008780	NXPH2 (ENSECRG00000008777)	spopla (ENSECRG00000008694)	hnmt (ENSECRG00000008654)	THSD7B (ENSECRG00000008604)	cxcr4a (ENSECRG00000008578)	dars1 (ENSECRG00000008506)	mcm6 (ENSECRG00000008463) ##22	ENSECRG00000008447	tmbim1a (ENSECRG00000008434)	pnkd (ENSECRG00000008405)	catip (ENSECRG00000008389)	gmppab (ENSECRG00000008367)	ENSECRG00000008350	ENSECRG00000008338	asic4a (ENSECRG00000008322)	CHPF (ENSECRG00000008307)	WNT6 (ENSECRG00000008294)	wnt10a (ENSECRG00000008189)	cdk5r2b (ENSECRG00000008168)	CCDC14 (ENSECRG00000008148)	ENSECRG00000008134	MYLK (ENSECRG00000008099)
Neopterygii	ANCESTRAL SPECIES	1	ENSGT00900000143214	ENSGT00390000006631	ENSGT00950000182860.a.b.b	ENSGT00390000008033	ENSGT00940000157521.a.a	ENSGT00940000157521.b	ENSGT00940000167103	ENSGT00940000166136	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000181222	ENSGT00530000065055	ENSGT01050000244890.a.b.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT01030000234748	ENSGT00940000157018	ENSGT00940000154610.e.a	ENSGT00940000158414	ENSGT00940000159052	ENSGT01050000244857.B.b	ENSGT00940000159281	ENSGT00940000160299	ENSGT00390000008812.a	ENSGT00940000161562
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	675	ZFHX4 (ENSLOCG00000013472)	hnf4g (ENSLOCG00000013459)	ENSLOCG00000018166	pign (ENSLOCG00000013442)	relch (ENSLOCG00000013429)	si:dkey-94e7.2 (ENSLOCG00000013408)	sec61g (ENSLOCG00000013405)	tpk1 (ENSLOCG00000013400)	CNTNAP2 (ENSLOCG00000013353)	cul1b (ENSLOCG00000013339)	ezh2 (ENSLOCG00000013329)	pdia4 (ENSLOCG00000013319)	ENSLOCG00000013313	zgc:162895 (ENSLOCG00000013303)	RAMP3 (ENSLOCG00000013297)	mcm6l (ENSLOCG00000013289) ##22	ANKS6 (ENSLOCG00000013281)	ahrrb (ENSLOCG00000013271)	exoc3 (ENSLOCG00000013261)	pigm (ENSLOCG00000013256)	pdcd6 (ENSLOCG00000013249)	zgc:101569 (ENSLOCG00000013243)	bmp6 (ENSLOCG00000013238)	txndc5 (ENSLOCG00000013233)	bloc1s5 (ENSLOCG00000013223)	EEF1E1 (ENSLOCG00000013217)	slc35b3 (ENSLOCG00000013210)	ENSLOCG00000013198	tfap2a (ENSLOCG00000013190) ##28	GCNT2 (ENSLOCG00000013184)	trnau1apb (ENSLOCG00000013175)
Spotted gar	MODERN SPECIES	650	zeb2b (ENSLOCG00000001301)	gtdc1 (ENSLOCG00000001286)	arhgap15 (ENSLOCG00000001273)	KYNU (ENSLOCG00000001250)	ENSLOCG00000017825	LRP1B (ENSLOCG00000001123)	ENSLOCG00000001087	ENSLOCG00000001058	NXPH2 (ENSLOCG00000001038)	spopla (ENSLOCG00000001012)	HNMT (ENSLOCG00000000995)	hnmt (ENSLOCG00000000982)	THSD7B (ENSLOCG00000000959)	cxcr4a (ENSLOCG00000000937)	dars1 (ENSLOCG00000000902)	mcm6 (ENSLOCG00000000872) ##22	tmbim1a (ENSLOCG00000000843)	pnkd (ENSLOCG00000000821)	catip (ENSLOCG00000000788)	gmppaa (ENSLOCG00000000759)	ENSLOCG00000000718	asic4a (ENSLOCG00000000689)
Osteoglossocephalai	ANCESTRAL SPECIES	56	ENSGT00390000010316	ENSGT00530000064199	ENSGT00950000182997.a.b.b.a	ENSGT01100000263521.b	ENSGT01100000263556.a.a.p.a	ENSGT00940000159677.a.b	ENSGT00940000159677.a.a	ENSGT00950000182883.b.a.a	ENSGT00940000155953	ENSGT00390000002862.ub	ENSGT00390000002862.tb	ENSGT00940000159262	ENSGT01050000244848.C.a	ENSGT01050000244890.a.b.a.i.b	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00940000161026	ENSGT00940000157664	ENSGT00940000154486.a.b.a.b	ENSGT00390000017728	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.b	ENSGT00940000160556	ENSGT00940000158294.g.a	ENSGT00940000154014.a	ENSGT00440000033985
Osteoglossiformes	ANCESTRAL SPECIES	92	ENSGT01030000234579.B.b	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00940000163254	ENSGT00530000063484.b.b.d.b	ENSGT00940000154342.C	ENSGT00940000159499	ENSGT00940000159677.a.b	ENSGT00940000159677.a.a	ENSGT00950000182883.b.a.a	ENSGT00940000155953.h	ENSGT00940000159262.b	ENSGT01050000244848.C.a.b	ENSGT01030000234618.F	ENSGT01050000244824.D.b ##22	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a.k	ENSGT00390000017728
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	7	ENSSFOG00015024884	ENSSFOG00015018991	relch (ENSSFOG00015018836)	ENSSFOG00015018804	ENSSFOG00015027677	ENSSFOG00015018775	ENSSFOG00015018734	tpk1 (ENSSFOG00015018681)	CNTNAP2 (ENSSFOG00015018636)	ENSSFOG00015029728	CUL1 (ENSSFOG00015018579)	ezh2 (ENSSFOG00015018492)	pdia4 (ENSSFOG00015018458)	zgc:162895 (ENSSFOG00015018432)	RAMP3 (ENSSFOG00015018419)	mcm6l (ENSSFOG00015018384) ##22	exoc3 (ENSSFOG00015018281)	pigm (ENSSFOG00015018263)	SNTG1 (ENSSFOG00015018129)	SNAI2 (ENSSFOG00015018025)	ENSSFOG00015028322	ENSSFOG00015026367
Asian bonytongue	MODERN SPECIES	5	hprt1 (ENSSFOG00015012378)	ENSSFOG00015012419	gpc3 (ENSSFOG00015033259)	gpc4 (ENSSFOG00015012438)	mbnl3 (ENSSFOG00015012501)	rap2c (ENSSFOG00015012549)	ENSSFOG00015012571	ENSSFOG00015012591	ugt1b5 (ENSSFOG00015012640)	ugt1b1 (ENSSFOG00015012613)	NXPH2 (ENSSFOG00015032194)	SPOPL (ENSSFOG00015012678)	THSD7B (ENSSFOG00015012733)	cxcr4a (ENSSFOG00015012893)	dars1 (ENSSFOG00015012900)	mcm6 (ENSSFOG00015012921) ##22	si:ch73-71c20.5 (ENSSFOG00015012997)	tmbim1a (ENSSFOG00015026722)	pnkd (ENSSFOG00015013028)	catip (ENSSFOG00015013062)	gmppaa (ENSSFOG00015013081)	ENSSFOG00015028170	ENSSFOG00015013161	CHPF (ENSSFOG00015013190)	wnt10a (ENSSFOG00015013204)	ENSSFOG00015030465	CRYBA2 (ENSSFOG00015023586)	KALRN (ENSSFOG00015013293)	ENSSFOG00015029305	MYLK (ENSSFOG00015013458)	FMNL2 (ENSSFOG00015013527)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	463										CNTNAP2 (ENSPKIG00000001434)	CUL1 (ENSPKIG00000001473)	ezh2 (ENSPKIG00000001533)	pdia4 (ENSPKIG00000001611)	zgc:162895 (ENSPKIG00000001641)	RAMP3 (ENSPKIG00000001674)	mcm6l (ENSPKIG00000001695) ##22	ahrrb (ENSPKIG00000001752)	exoc3 (ENSPKIG00000001792)	pigm (ENSPKIG00000001831)	ENSPKIG00000001849	si:ch211-106n13.3 (ENSPKIG00000001895)	ccr12a (ENSPKIG00000001931)
P. kingsleyae	MODERN SPECIES	35	MAP3K13 (ENSPKIG00000010194)	trpm2 (ENSPKIG00000010256)	CFAP410 (ENSPKIG00000010319)	hycc2 (ENSPKIG00000010348)	ndufb3 (ENSPKIG00000010383)	cflara (ENSPKIG00000010416)	DIP2A (ENSPKIG00000010487)	ENSPKIG00000010555	ugt1b1 (ENSPKIG00000010577)	ugt1b1 (ENSPKIG00000010600)	NXPH2 (ENSPKIG00000010613)	SPOPL (ENSPKIG00000010641)	THSD7B (ENSPKIG00000010687)	cxcr4a (ENSPKIG00000010723)	dars1 (ENSPKIG00000010740)	mcm6 (ENSPKIG00000010775) ##22	si:ch73-71c20.5 (ENSPKIG00000010829)	ENSPKIG00000010973	pnkd (ENSPKIG00000011208)	catip (ENSPKIG00000011251)	gmppaa (ENSPKIG00000011280)	ENSPKIG00000011352	asic4a (ENSPKIG00000011378)	CHPF (ENSPKIG00000011411)	ENSPKIG00000011428	wnt10a (ENSPKIG00000011444)	cdk5r2b (ENSPKIG00000011464)	CRYBA2 (ENSPKIG00000011485)	KALRN (ENSPKIG00000011533)	MYLK (ENSPKIG00000011697)	FMNL2 (ENSPKIG00000011874)
Clupeocephala	ANCESTRAL SPECIES	66															ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a	ENSGT00940000166591	ENSGT00940000164225	ENSGT00940000178777	ENSGT00940000154486.a.a.b	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072
Euteleosteomorpha	ANCESTRAL SPECIES	99															ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.j	ENSGT00940000154486.a.a.b	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00940000164076.b.b	ENSGT01090000260052.b.b.b	ENSGT00940000160556	ENSGT00940000158294.g.a
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT00940000157063.a.b	ENSGT00390000018710	ENSGT00940000156130.a.b	ENSGT00940000158635.d	ENSGT00940000156473.f.b	ENSGT00940000154847.n.b	ENSGT00940000159988.d	ENSGT00940000156700.d	ENSGT00390000014771.a	ENSGT00940000155171.a.b.d	ENSGT00500000044852.a.a.b	ENSGT00940000154952.a.b	ENSGT01100000264314	ENSGT00940000164667.b.a.b	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a	ENSGT00940000154486.a.a.b	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00390000011072	ENSGT00940000156394.p	ENSGT00940000164061.c.a	ENSGT00940000157657.c	ENSGT00940000159846.a.a.c	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b	ENSGT00530000063693.a.a	ENSGT00940000166060
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	72	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b.c	ENSGT01030000234567.A.b.c	ENSGT00940000165806.j.a	ENSGT00950000182838.B.a.b.o	ENSGT00390000001141.c	ENSGT00940000162200.a.b.e	ENSGT00940000157841.e.b	ENSGT00940000159567.a.a.c	ENSGT00940000157990.a.a.c	ENSGT01100000263518.C	ENSGT00940000160062.a.c	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.d	ENSGT01050000244848.C.b.j	ENSGT01050000244824.D.b.k.a ##22	ENSGT00530000065055	ENSGT00940000166591	ENSGT00940000164225.e.b	ENSGT00390000006290	ENSGT00940000155219.hb.a.c	ENSGT00480000042679.b.b.e	ENSGT00390000013700.bb	ENSGT00940000157039.b.c	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00400000022326.b.a.b.b.b	ENSGT00940000164700.B.a	ENSGT00940000159258.c.c	ENSGT00940000156948.i.a.c	ENSGT01030000235105.c	ENSGT00990000205697.a
Huchen	MODERN SPECIES	1327										ENSHHUG00000012950	carmil3 (ENSHHUG00000012968)	rem2 (ENSHHUG00000013070)	ENSHHUG00000013080	ENSHHUG00000013093	ENSHHUG00000013210	mcm6 (ENSHHUG00000013227) ##22	si:ch73-71c20.5 (ENSHHUG00000014113)	ENSHHUG00000014116	casp20 (ENSHHUG00000014130)
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b.c	ENSGT01030000234567.A.b.c	ENSGT00940000165806.j.a	ENSGT00950000182838.B.a.b.o	ENSGT00390000001141.c	ENSGT00940000162200.a.b.e	ENSGT00940000157841.e.b	ENSGT00940000159567.a.a.c	ENSGT00940000157990.a.a.c	ENSGT01100000263518.C	ENSGT00940000160062.a.c	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.d	ENSGT01050000244848.C.b.j	ENSGT01050000244824.D.b.k.a ##22	ENSGT00530000065055	ENSGT00940000166591	ENSGT00940000164225.e.b	ENSGT00390000006290	ENSGT00940000155219.hb.a.c	ENSGT00480000042679.b.b.e	ENSGT00390000013700.bb	ENSGT00940000157039.b.c	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00400000022326.b.a.b.b.b	ENSGT00940000164700.B.a	ENSGT00940000159258.c.c	ENSGT00940000156948.i.a.c	ENSGT01030000235105.c	ENSGT00990000205697.a
Salmo	ANCESTRAL SPECIES	5	ENSGT00950000182893.a.b.e.b.c	ENSGT01030000234567.A.b.c	ENSGT00940000165806.j.a	ENSGT00950000182838.B.a.b.o	ENSGT00940000158278.e.b.d	ENSGT00390000001141.c	ENSGT00940000162200.a.b.e	ENSGT00940000157841.e.b	ENSGT00940000159567.a.a.c	ENSGT00940000157990.a.a.c	ENSGT01100000263518.C	ENSGT00940000160062.a.c	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.d	ENSGT01050000244848.C.b.j	ENSGT01050000244824.D.b.k.a ##22	ENSGT00530000065055	ENSGT00940000166591	ENSGT00940000164225.e.b	ENSGT00390000006290	ENSGT00940000155219.hb.a.c	ENSGT00480000042679.b.b.e	ENSGT00390000013700.bb	ENSGT00940000157039.b.c	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00400000022326.b.a.b.b.b	ENSGT00940000164700.B.a	ENSGT00940000159258.c.c	ENSGT00940000156948.i.a.c	ENSGT01030000235105.c	ENSGT00990000205697.a
Atlantic salmon	MODERN SPECIES	22	ap1g2 (ENSSSAG00000067945)	ENSSSAG00000071560	prmt5 (ENSSSAG00000071581)	ENSSSAG00000071632	ENSSSAG00000064913	ENSSSAG00000071634	psmb5 (ENSSSAG00000071636)	ENSSSAG00000037434	carmil3 (ENSSSAG00000037707)	ENSSSAG00000039292	rem2 (ENSSSAG00000049275)	ENSSSAG00000039329	ENSSSAG00000039471	ENSSSAG00000118192	ENSSSAG00000111204	ENSSSAG00000041624 ##22	ENSSSAG00000094775	ENSSSAG00000041831	ENSSSAG00000041857	ENSSSAG00000110838	ENSSSAG00000041881	ENSSSAG00000041897	PCDH8 (ENSSSAG00000041902)	lect1 (ENSSSAG00000041909)	SUGT1 (ENSSSAG00000041917)	ENSSSAG00000102393	ENSSSAG00000110036	ENSSSAG00000042058	ENSSSAG00000092790	ENSSSAG00000042360	ENSSSAG00000048232
River trout	MODERN SPECIES	24	dhrs1 (ENSSTUG00000010338)	homeza (ENSSTUG00000010333)	zp3f.1 (ENSSTUG00000010261)	ENSSTUG00000010249	ap1g2 (ENSSTUG00000009504)	prmt5 (ENSSTUG00000008225)	ENSSTUG00000008182	psmb5 (ENSSTUG00000008137)	ENSSTUG00000008088	carmil3 (ENSSTUG00000008028)	ENSSTUG00000008017	rem2 (ENSSTUG00000008008)	ENSSTUG00000007982	TGM1 (ENSSTUG00000007688)	ENSSTUG00000007675	mcm6 (ENSSTUG00000006525) ##22	si:ch73-71c20.5 (ENSSTUG00000006492)	casp8 (ENSSTUG00000006465)	ENSSTUG00000006453	ENSSTUG00000006432	ENSSTUG00000006422	PCDH8 (ENSSTUG00000006419)	CNMD (ENSSTUG00000006406)	sugt1 (ENSSTUG00000006391)	ENSSTUG00000006378	ednrba (ENSSTUG00000006342)	ENSSTUG00000006329	ENSSTUG00000006323	ENSSTUG00000004101	EPHA4 (ENSSTUG00000003673)	ENSSTUG00000003464
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b.c	ENSGT01030000234567.A.b.c	ENSGT00940000165806.j.a	ENSGT00950000182838.B.a.b.o	ENSGT00390000001141.c	ENSGT00940000162200.a.b.e	ENSGT00940000157841.e.b	ENSGT00940000159567.a.a.c	ENSGT00940000157990.a.a.c	ENSGT01100000263518.C	ENSGT00940000160062.a.c	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.d	ENSGT01050000244848.C.b.j	ENSGT01050000244824.D.b.k.a ##22	ENSGT00530000065055	ENSGT00940000166591	ENSGT00940000164225.e.b	ENSGT00390000006290	ENSGT00940000155219.hb.a.c	ENSGT00480000042679.b.b.e	ENSGT00390000013700.bb	ENSGT00940000157039.b.c	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00400000022326.b.a.b.b.b	ENSGT00940000159258.c.c	ENSGT00940000156948.i.a.c	ENSGT01030000235105.c	ENSGT00990000205697.a	ENSGT00980000200268.a
Oncorhynchus_a	ANCESTRAL SPECIES	22	ENSGT00940000157797	ENSGT00950000182893.a.b.e.b.c	ENSGT01030000234567.A.b.c	ENSGT00940000165806.j.a	ENSGT00950000182838.B.a.b.o	ENSGT00390000001141.c	ENSGT00940000162200.a.b.e	ENSGT00940000157841.e.b	ENSGT00940000159567.a.a.c	ENSGT00940000157990.a.a.c	ENSGT01100000263518.C	ENSGT00940000160062.a.c	ENSGT00390000004964	ENSGT01050000244939.a.a.b.a.a.d	ENSGT01050000244848.C.b.j	ENSGT01050000244824.D.b.k.a ##22	ENSGT00530000065055	ENSGT00940000166591	ENSGT00940000164225.e.b	ENSGT00390000006290	ENSGT00940000155219.hb.a.c	ENSGT00480000042679.b.b.e	ENSGT00390000013700.bb	ENSGT00940000157039.b.c	ENSGT01100000263512.a.a.a.b.a.a.b	ENSGT00400000022326.b.a.b.b.b	ENSGT00940000159258.c.c	ENSGT00940000156948.i.a.c	ENSGT01030000235105.c	ENSGT00990000205697.a	ENSGT00980000200268.a
Chinook salmon	MODERN SPECIES	20	homeza (ENSOTSG00005007209)	zp3f.1 (ENSOTSG00005007207)	ENSOTSG00005007206	ap1g2 (ENSOTSG00005047916)	prmt5 (ENSOTSG00005047912)	PSMB11 (ENSOTSG00005047911)	ENSOTSG00005047910	ENSOTSG00005047909	psmb5 (ENSOTSG00005047908)	CDH24 (ENSOTSG00005047907)	ENSOTSG00005047905	rem2 (ENSOTSG00005047904)	ENSOTSG00005047903	TGM1 (ENSOTSG00005047899)	ENSOTSG00005047898	mcm6 (ENSOTSG00005047897) ##22	si:ch73-71c20.5 (ENSOTSG00005047896)	ENSOTSG00005047895	casp20 (ENSOTSG00005047894)	ENSOTSG00005047893	CXorf38 (ENSOTSG00005047892)	PCDH8 (ENSOTSG00005047891)	CNMD (ENSOTSG00005047890)	sugt1 (ENSOTSG00005047889)	ENSOTSG00005047888	ednrba (ENSOTSG00005047885)	ENSOTSG00005047883	ENSOTSG00005047880	pxylp1 (ENSOTSG00005047879)	EPHA4 (ENSOTSG00005047874)	ENSOTSG00005047869
Salmoninae	ANCESTRAL SPECIES	24	ENSGT00950000182893.a.b.e.b.d	ENSGT00740000115581.e	ENSGT01030000234567.A.b.d	ENSGT00940000165806.j.b	ENSGT00950000182838.B.a.b.p	ENSGT00940000158278.e.b	ENSGT00390000001141.d	ENSGT00940000162200.a.b.f	ENSGT00940000157841.e.a	ENSGT00940000159567.a.a.d	ENSGT00940000157990.a.a.d	ENSGT00940000160062.a.d	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00390000016277.b	ENSGT01050000244848.C.b.i	ENSGT01050000244824.D.b.k.b ##22	ENSGT00940000164225.e.a.a	ENSGT00940000174974	ENSGT00940000181222	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a	ENSGT00940000164225.e.a.b	ENSGT00940000168744	ENSGT00940000155219.hb.a.d	ENSGT00480000042679.b.b.f	ENSGT00390000013700.cb	ENSGT00940000157039.b.d	ENSGT01100000263512.a.a.a.b.a.a.a	ENSGT00940000158961	ENSGT00950000183110.b.a.d	ENSGT00390000013841.eb
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00950000182893.a.b.e.b.d	ENSGT00740000115581.e	ENSGT01030000234567.A.b.d	ENSGT00940000165806.j.b	ENSGT00950000182838.B.a.b.p	ENSGT00940000158278.e.b	ENSGT00390000001141.d	ENSGT00940000162200.a.b.f	ENSGT00940000157841.e.a	ENSGT00940000159567.a.a.d	ENSGT00940000157990.a.a.d	ENSGT00940000160062.a.d	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00390000016277.b	ENSGT01050000244848.C.b.i	ENSGT01050000244824.D.b.k.b ##22	ENSGT00940000164225.e.a.a	ENSGT00940000174974	ENSGT00940000181222	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a	ENSGT00940000168744	ENSGT00940000155219.hb.a.d	ENSGT00480000042679.b.b.f	ENSGT00390000013700.cb	ENSGT00940000157039.b.d	ENSGT01100000263512.a.a.a.b.a.a.a	ENSGT00940000158961	ENSGT00950000183110.b.a.d	ENSGT00390000013841.db.a	ENSGT00940000161913.a
Salmo	ANCESTRAL SPECIES	21	ENSGT00740000115581.e	ENSGT00990000214019	ENSGT01030000234567.A.b.d	ENSGT00940000165806.j.b	ENSGT00950000182838.B.a.b.p	ENSGT00940000158278.e.b.c	ENSGT00390000001141.d	ENSGT00940000162200.a.b.f	ENSGT00940000157841.e.a	ENSGT00940000159567.a.a.d	ENSGT00940000157990.a.a.d	ENSGT00940000160062.a.d	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00390000016277.b	ENSGT01050000244848.C.b.i	ENSGT01050000244824.D.b.k.b ##22	ENSGT00940000164225.e.a.a	ENSGT00940000174974	ENSGT00940000181222	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a	ENSGT00940000164225.e.a.b	ENSGT00940000155219.hb.a.d	ENSGT00480000042679.b.b.f	ENSGT00940000157039.b.d	ENSGT01100000263512.a.a.a.b.a.a.a	ENSGT00940000158961	ENSGT00950000183110.b.a.d	ENSGT00390000013841.db.a	ENSGT00940000162287.B.a.a.b.b	ENSGT00940000161913.a
Atlantic salmon	MODERN SPECIES	5	zp3f.2 (ENSSSAG00000097451)	ap1g2 (ENSSSAG00000032035)	zp3f.2 (ENSSSAG00000022880)	ENSSSAG00000048190	psmb5 (ENSSSAG00000101138)	prmt5 (ENSSSAG00000048567)	ENSSSAG00000090634	ENSSSAG00000117177	ENSSSAG00000048728	carmil3 (ENSSSAG00000048795)	ENSSSAG00000101962	rem2 (ENSSSAG00000087617)	tgm1l1 (ENSSSAG00000049361)	ENSSSAG00000050773	ENSSSAG00000050781	ENSSSAG00000050791 ##22	ENSSSAG00000050863	ENSSSAG00000050872	tmbim1a (ENSSSAG00000093921)	ENSSSAG00000086729	ENSSSAG00000099250	ENSSSAG00000110407	ENSSSAG00000050900	ENSSSAG00000112076	ENSSSAG00000050904	ENSSSAG00000100789	ENSSSAG00000094027	ENSSSAG00000050997	ARHGAP45 (ENSSSAG00000052554)	RPAB1 (ENSSSAG00000052778)	ENSSSAG00000052790
River trout	MODERN SPECIES	13	ENSSTUG00000008667	ENSSTUG00000008683	zp3f.2 (ENSSTUG00000008729)	ENSSTUG00000008826	zp3f.2 (ENSSTUG00000008912)	ap1g2 (ENSSTUG00000008949)	ENSSTUG00000009276	prmt5 (ENSSTUG00000009454)	psmb5 (ENSSTUG00000009649)	CDH24 (ENSSTUG00000009657)	carmil3 (ENSSTUG00000009696)	rem2 (ENSSTUG00000010037)	ENSSTUG00000010053	abhd4 (ENSSTUG00000010443)	ENSSTUG00000010467	mcm6 (ENSSTUG00000010483) ##22	casp20 (ENSSTUG00000010628)	ENSSTUG00000010640	tmbim1a (ENSSTUG00000010655)	catip (ENSSTUG00000010703)	ENSSTUG00000010714	PCDH8 (ENSSTUG00000010766)	CNMD (ENSSTUG00000010771)	ENSSTUG00000010787	ednrba (ENSSTUG00000010807)	ENSSTUG00000010825	ARHGAP45 (ENSSTUG00000010851)	POLR2E (ENSSTUG00000010861)	ENSSTUG00000010882	gpx4b (ENSSTUG00000010907)	ENSSTUG00000010946
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00950000182893.a.b.e.b.d	ENSGT00740000115581.e	ENSGT01030000234567.A.b.d.p.a.b	ENSGT00940000165806.j.b	ENSGT00950000182838.B.a.b.p	ENSGT00940000158278.e.b	ENSGT00390000001141.d	ENSGT00940000162200.a.b.f	ENSGT00940000157841.e.a	ENSGT00940000159567.a.a.d	ENSGT00940000157990.a.a.d	ENSGT00940000160062.a.d	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00390000016277.b	ENSGT01050000244848.C.b.i	ENSGT01050000244824.D.b.k.b ##22	ENSGT00940000164225.e.a.a	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a.c	ENSGT00940000168744	ENSGT00940000155219.hb.a.d	ENSGT00480000042679.b.b.f	ENSGT00390000013700.cb	ENSGT00940000157039.b.d	ENSGT01100000263512.a.a.a.b.a.a.a	ENSGT00940000158961	ENSGT00950000183110.b.a.d	ENSGT00390000013841.db.a	ENSGT00940000161913.a	ENSGT00940000159258.c.d	ENSGT00940000156948.i.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00950000182893.a.b.e.b.d	ENSGT00740000115581.e	ENSGT01030000234567.A.b.d.o.a.a	ENSGT00940000165806.j.b	ENSGT00950000182838.B.a.b.p	ENSGT00940000158278.e.b	ENSGT00390000001141.d	ENSGT00940000162200.a.b.f	ENSGT00940000157841.e.a	ENSGT00940000159567.a.a.d	ENSGT00940000157990.a.a.d	ENSGT00940000160062.a.d	ENSGT01050000244939.a.a.b.a.a.c	ENSGT00390000016277.b	ENSGT01050000244848.C.b.i	ENSGT01050000244824.D.b.k.b ##22	ENSGT00940000164225.e.a.a	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000154101.a.c	ENSGT00940000168744	ENSGT00940000155219.hb.a.d	ENSGT00480000042679.b.b.f	ENSGT00390000013700.cb	ENSGT00940000157039.b.d	ENSGT01100000263512.a.a.a.b.a.a.a	ENSGT00940000158961	ENSGT00950000183110.b.a.d	ENSGT00390000013841.db.a	ENSGT00940000162287.B.a.a.b.a.a	ENSGT00940000161913.a	ENSGT00940000159258.c.d
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005039131	ENSOTSG00005039133	mmp14b (ENSOTSG00005039135)	ENSOTSG00005039138	si:ch211-14a17.11 (ENSOTSG00005039139)	ENSOTSG00005039144	homeza (ENSOTSG00005039145)	ENSOTSG00005039146	ENSOTSG00005039150	ENSOTSG00005039151	carmil3 (ENSOTSG00005039156)	rem2 (ENSOTSG00005039162)	ENSOTSG00005039186	abhd4 (ENSOTSG00005039550)	ENSOTSG00005039551	mcm6 (ENSOTSG00005039552) ##22	ENSOTSG00005039555	tmbim1a (ENSOTSG00005039558)	catip (ENSOTSG00005039561)	ENSOTSG00005039563	PCDH8 (ENSOTSG00005000810)	CNMD (ENSOTSG00005001053)	ENSOTSG00005001069	ENSOTSG00005001133	ENSOTSG00005001152	ARHGAP45 (ENSOTSG00005001170)	POLR2E (ENSOTSG00005001183)	ENSOTSG00005001207	gpx4b (ENSOTSG00005001230)	ENSOTSG00005001360	EPHA4 (ENSOTSG00005001375)
Chinook salmon	MODERN SPECIES	2983											carmil3 (ENSOTSG00005046311)	rem2 (ENSOTSG00005046313)	TGM1 (ENSOTSG00005046314)	abhd4 (ENSOTSG00005046364)	ENSOTSG00005046365	mcm6 (ENSOTSG00005046367) ##22	casp20 (ENSOTSG00005046385)	tmbim1a (ENSOTSG00005046387)	catip (ENSOTSG00005046390)	ENSOTSG00005046396	PCDH8 (ENSOTSG00005046397)	CNMD (ENSOTSG00005046398)	ENSOTSG00005046402	ENSOTSG00005046407
Coho salmon	MODERN SPECIES	23	zp3f.2 (ENSOKIG00005043753)	zp3f.2 (ENSOKIG00005043785)	ENSOKIG00005043805	ap1g2 (ENSOKIG00005043959)	ENSOKIG00005038430	ENSOKIG00005038452	prmt5 (ENSOKIG00005038649)	PSMB11 (ENSOKIG00005039888)	psmb5 (ENSOKIG00005039910)	ENSOKIG00005039936	carmil3 (ENSOKIG00005040036)	rem2 (ENSOKIG00005040333)	TGM1 (ENSOKIG00005040364)	abhd4 (ENSOKIG00005040580)	ENSOKIG00005040639	mcm6 (ENSOKIG00005040687) ##22	casp20 (ENSOKIG00005040893)	tmbim1a (ENSOKIG00005040924)	catip (ENSOKIG00005040979)	PCDH8 (ENSOKIG00005040995)	ENSOKIG00005041018	SUGT1 (ENSOKIG00005041055)	ENSOKIG00005041099	ednrba (ENSOKIG00005041124)	ENSOKIG00005041198	ENSOKIG00005041274	ARHGAP45 (ENSOKIG00005041288)	POLR2E (ENSOKIG00005041327)	ENSOKIG00005041363	gpx4b (ENSOKIG00005041387)	ENSOKIG00005041396
Rainbow trout	MODERN SPECIES	29	zp3f.2 (ENSOMYG00000024287)	ENSOMYG00000024315	ap1g2 (ENSOMYG00000024799)	ENSOMYG00000027155	prmt5 (ENSOMYG00000027919)	ENSOMYG00000060157	ENSOMYG00000077590	psmb5 (ENSOMYG00000028124)	ENSOMYG00000028156	carmil3 (ENSOMYG00000028210)	rem2 (ENSOMYG00000028370)	ENSOMYG00000064101	ENSOMYG00000001524	ENSOMYG00000001618	ENSOMYG00000001640	ENSOMYG00000001753 ##22	ENSOMYG00000001829	ENSOMYG00000067475	tmbim1a (ENSOMYG00000001845)	ENSOMYG00000001876	ENSOMYG00000032639	ENSOMYG00000063560	ENSOMYG00000001921	ENSOMYG00000073767	ENSOMYG00000029700	ENSOMYG00000001953	ENSOMYG00000067090	PCDH8 (ENSOMYG00000001961)	ENSOMYG00000001968	SUGT1 (ENSOMYG00000002006)	ENSOMYG00000002079
Huchen	MODERN SPECIES	403												rem2 (ENSHHUG00000004899)	TGM1 (ENSHHUG00000004760)	abhd4 (ENSHHUG00000004745)	ENSHHUG00000004742	mcm6 (ENSHHUG00000004657) ##22	ENSHHUG00000004644	ENSHHUG00000004619	ENSHHUG00000004601	tmbim1a (ENSHHUG00000004555)	catip (ENSHHUG00000004546)	ENSHHUG00000004536	ENSHHUG00000004528	PCDH8 (ENSHHUG00000004518)	CNMD (ENSHHUG00000004512)	sugt1 (ENSHHUG00000004505)	ENSHHUG00000004497	ednrba (ENSHHUG00000004463)	ENSHHUG00000004386	ARHGAP45 (ENSHHUG00000004379)	POLR2E (ENSHHUG00000004366)
Salmoninae	ANCESTRAL SPECIES	68	ENSGT00390000018710.l	ENSGT00940000156130.a.b.d	ENSGT00940000158635.d	ENSGT00940000156473.f.b.c	ENSGT00940000154847.n.b.c	ENSGT00940000159988.d.d	ENSGT01030000235349	ENSGT00940000155171.a.b.d.a.a	ENSGT00500000044852.a.a.b.e	ENSGT00940000154952.a.b.db	ENSGT01030000234518.E.d.e.b	ENSGT00940000164667.b.a.b	ENSGT00390000001319.m.b	ENSGT00940000154516.a.a.i	ENSGT00940000154774.e.b	ENSGT01050000244824.D.b.l ##22	ENSGT00940000154486.a.a.b	ENSGT00940000154486.a.b.a.a.a	ENSGT01030000234613.a.a.g	ENSGT00520000055637.B.h.b	ENSGT01090000260052.b.b.a.h	ENSGT00940000158294.g.b.g	ENSGT00440000033985	ENSGT00390000011072.h	ENSGT00390000015821.t.a	ENSGT00940000156394.p.a.b	ENSGT00940000164061.c.a.d	ENSGT00940000157657.c.c	ENSGT00940000159846.a.a.c.a	ENSGT00940000159742.rb.c	ENSGT00940000159432.C
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000156130.a.b.d	ENSGT00940000158635.d	ENSGT00940000156473.f.b.c	ENSGT00940000154847.n.b.c	ENSGT00940000159988.d.d	ENSGT00940000156700.d.c	ENSGT01030000235349	ENSGT00940000155171.a.b.d.a.a	ENSGT00500000044852.a.a.b.e	ENSGT00940000154952.a.b.db	ENSGT01030000234518.E.d.e.b	ENSGT00940000164667.b.a.b	ENSGT00390000001319.m.b	ENSGT00940000154516.a.a.i	ENSGT00940000154774.e.b	ENSGT01050000244824.D.b.l ##22	ENSGT00940000154486.a.b.a.a.a	ENSGT01030000234613.a.a.g	ENSGT00520000055637.B.h.b	ENSGT01090000260052.b.b.a.h	ENSGT00940000158294.g.b.g	ENSGT00440000033985	ENSGT00390000011072.h	ENSGT00390000015821.t.a	ENSGT00940000156394.p.a.b	ENSGT00940000164061.c.a.d	ENSGT00940000157657.c.c	ENSGT00940000164115.A.e	ENSGT00940000159846.a.a.c.a	ENSGT00940000159742.rb.c	ENSGT00940000159432.C
Salmo	ANCESTRAL SPECIES	21	ENSGT00390000018710.l	ENSGT00940000156130.a.b.d	ENSGT00940000158635.d	ENSGT00940000156473.f.b.c	ENSGT00940000154847.n.b.c	ENSGT00940000159988.d.d	ENSGT01030000235349	ENSGT00940000155171.a.b.d.a.a	ENSGT00500000044852.a.a.b.e	ENSGT00940000154952.a.b.db	ENSGT01030000234518.E.d.e.b	ENSGT00940000164667.b.a.b	ENSGT00390000001319.m.b	ENSGT00940000154516.a.a.i	ENSGT00940000154774.e.b	ENSGT01050000244824.D.b.l ##22	ENSGT00940000154486.a.b.a.a.a	ENSGT01030000234613.a.a.g	ENSGT01090000260052.b.b.a.h	ENSGT00940000158294.g.b.g	ENSGT00440000033985	ENSGT00390000011072.h	ENSGT00390000015821.t.a	ENSGT00940000156394.p.a.b	ENSGT00940000158302.e	ENSGT00940000164061.c.a.d	ENSGT00940000157657.c.c	ENSGT00940000164115.A.e	ENSGT00940000159846.a.a.c.a	ENSGT00940000159742.rb.c	ENSGT00940000159432.C
Atlantic salmon	MODERN SPECIES	5	crispld1b (ENSSSAG00000069255)	socs6b (ENSSSAG00000086410)	cbln2a (ENSSSAG00000114584)	ENSSSAG00000069290	marchf6 (ENSSSAG00000069305)	ANKRD33B (ENSSSAG00000069435)	ctnnd2b (ENSSSAG00000069468)	ENSSSAG00000093114	ENSSSAG00000100530	si:dkey-94e7.2 (ENSSSAG00000116866)	SC61G (ENSSSAG00000069860)	ENSSSAG00000069909	ENSSSAG00000101631	ENSSSAG00000091075	cul1a (ENSSSAG00000070396)	mcm6l (ENSSSAG00000039350) ##22	ahrrb (ENSSSAG00000104618)	exoc3 (ENSSSAG00000042366)	ENSSSAG00000042462	ccr12a (ENSSSAG00000121486)	hecw1b (ENSSSAG00000042596)	COA1 (ENSSSAG00000117856)	blvra (ENSSSAG00000065648)	vopp1a (ENSSSAG00000047348)	tgfbr1a (ENSSSAG00000098261)	col15a1b (ENSSSAG00000047605)	ENSSSAG00000047988	ENSSSAG00000105807	kcnh2a (ENSSSAG00000069889)	ENSSSAG00000069964	myh7l (ENSSSAG00000070217)
River trout	MODERN SPECIES	13	TMEM70 (ENSSTUG00000047726)	jph1b (ENSSTUG00000047730)	PI15 (ENSSTUG00000047736)	crispld1b (ENSSTUG00000034864)	socs6b (ENSSTUG00000034922)	cbln2a (ENSSTUG00000034928)	ENSSTUG00000034940	marchf6 (ENSSTUG00000034953)	ANKRD33B (ENSSTUG00000035140)	ctnnd2b (ENSSTUG00000035230)	GPR141 (ENSSTUG00000035985)	si:dkey-94e7.2 (ENSSTUG00000036006)	SEC61G (ENSSTUG00000036011)	ENSSTUG00000036029	cul1a (ENSSTUG00000036431)	mcm6l (ENSSTUG00000036876) ##22	ahrrb (ENSSTUG00000037347)	exoc3 (ENSSTUG00000037544)	si:ch211-106n13.3 (ENSSTUG00000037627)	ENSSTUG00000037648	ccr12a (ENSSTUG00000037689)	hecw1b (ENSSTUG00000037714)	COA1 (ENSSTUG00000038370)	blvra (ENSSTUG00000038388)	vopp1a (ENSSTUG00000038399)	tgfbr1a (ENSSTUG00000038441)	ENSSTUG00000039451	SLC12A7 (ENSSTUG00000039578)	kcnh2a (ENSSTUG00000043540)	ENSSTUG00000043564	ENSSTUG00000043627
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000156130.a.b.d	ENSGT00940000158635.d	ENSGT00940000156473.f.b.c	ENSGT00940000154847.n.b.c	ENSGT00940000159988.d.d	ENSGT00940000156700.d.c	ENSGT01030000235349	ENSGT00940000155171.a.b.d.a.a	ENSGT00500000044852.a.a.b.e	ENSGT00940000154952.a.b.db	ENSGT01030000234518.E.d.e.b	ENSGT00940000164667.b.a.b	ENSGT00390000001319.m.b	ENSGT00940000154516.a.a.i	ENSGT00940000154774.e.b	ENSGT01050000244824.D.b.l ##22	ENSGT00940000154486.a.b.a.a.a	ENSGT01030000234613.a.a.g	ENSGT00520000055637.B.h.b	ENSGT00940000163557.C	ENSGT01090000260052.b.b.a.h	ENSGT00940000158294.g.b.g	ENSGT00440000033985	ENSGT00390000011072.h	ENSGT00390000015821.t.a	ENSGT00940000156394.p.a.b	ENSGT00940000164061.c.a.d	ENSGT00940000157657.c.c	ENSGT00940000164115.A.e	ENSGT00940000159846.a.a.c.a	ENSGT00940000159742.rb.c
Oncorhynchus_a	ANCESTRAL SPECIES	24	ENSGT00940000156130.a.b.d	ENSGT00940000158635.d	ENSGT00940000156473.f.b.c	ENSGT00940000154847.n.b.c	ENSGT00940000159988.d.d	ENSGT00940000156700.d.c	ENSGT01030000235349	ENSGT00940000155171.a.b.d.a.a	ENSGT00500000044852.a.a.b.e	ENSGT00940000154952.a.b.db	ENSGT01030000234518.E.d.e.b	ENSGT00940000164667.b.a.b	ENSGT00390000001319.m.b	ENSGT00940000154516.a.a.i	ENSGT00940000154774.e.b	ENSGT01050000244824.D.b.l ##22	ENSGT00940000154486.a.b.a.a.a	ENSGT01030000234613.a.a.g	ENSGT00520000055637.B.h.b	ENSGT00940000163557.C	ENSGT01090000260052.b.b.a.h	ENSGT00940000158294.g.b.g	ENSGT00440000033985	ENSGT00390000011072.h	ENSGT00390000015821.t.a	ENSGT00940000156394.p.a.b	ENSGT00940000164061.c.a.d	ENSGT00940000157657.c.c	ENSGT00940000164115.A.e	ENSGT00940000159846.a.a.c.a	ENSGT00940000159742.rb.c
Coho salmon	MODERN SPECIES	23	ENSOKIG00005028194	TMEM70 (ENSOKIG00005028199)	jph1b (ENSOKIG00005028214)	PI15 (ENSOKIG00005028248)	crispld1b (ENSOKIG00005028283)	socs6b (ENSOKIG00005028385)	marchf6 (ENSOKIG00005028431)	cbln2a (ENSOKIG00005028737)	ANKRD33B (ENSOKIG00005028776)	ctnnd2b (ENSOKIG00005028886)	GPR141 (ENSOKIG00005030449)	si:dkey-94e7.2 (ENSOKIG00005030474)	SEC61G (ENSOKIG00005030509)	ENSOKIG00005030649	cul1a (ENSOKIG00005031431)	mcm6l (ENSOKIG00005032403) ##22	ahrrb (ENSOKIG00005032696)	exoc3 (ENSOKIG00005032732)	ENSOKIG00005032896	ENSOKIG00005032915	ENSOKIG00005032929	ccr12a (ENSOKIG00005032945)	hecw1b (ENSOKIG00005033045)	COA1 (ENSOKIG00005033951)	blvra (ENSOKIG00005033960)	vopp1a (ENSOKIG00005033967)	tgfbr1a (ENSOKIG00005033993)	col15a1b (ENSOKIG00005034193)	SLC12A7 (ENSOKIG00005034491)	ENSOKIG00005038166	kcnh2a (ENSOKIG00005038184)
Chinook salmon	MODERN SPECIES	1	jph1b (ENSOTSG00005038627)	PI15 (ENSOTSG00005038629)	crispld1b (ENSOTSG00005038632)	socs6b (ENSOTSG00005038658)	cbln2a (ENSOTSG00005038661)	NETO1 (ENSOTSG00005038664)	ENSOTSG00005038666	ENSOTSG00005038673	ENSOTSG00005038938	ctnnd2b (ENSOTSG00005038999)	GPR141 (ENSOTSG00005040046)	si:dkey-94e7.2 (ENSOTSG00005040047)	CNTNAP2 (ENSOTSG00005040064)	SEC61G (ENSOTSG00005042300)	cul1a (ENSOTSG00005042301)	mcm6l (ENSOTSG00005042314) ##22	ahrrb (ENSOTSG00005042341)	exoc3 (ENSOTSG00005042343)	ENSOTSG00005042355	ENSOTSG00005042356	ccr12a (ENSOTSG00005042357)	hecw1b (ENSOTSG00005042363)	COA1 (ENSOTSG00005042386)	blvra (ENSOTSG00005042387)	vopp1a (ENSOTSG00005042388)	tgfbr1a (ENSOTSG00005042389)	col15a1b (ENSOTSG00005042394)	SLC12A7 (ENSOTSG00005042404)	kcnh2a (ENSOTSG00005042442)	ENSOTSG00005042443	myh7l (ENSOTSG00005042445)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000071992	PI15 (ENSOMYG00000012484)	crispld1b (ENSOMYG00000012497)	SOCS6a2 (ENSOMYG00000012569)	cbln2a (ENSOMYG00000012579)	ENSOMYG00000012587	marchf6 (ENSOMYG00000012651)	ENSOMYG00000050534	ANKRD33B (ENSOMYG00000012765)	ctnnd2b (ENSOMYG00000012995)	ENSOMYG00000015569	si:dkey-94e7.2 (ENSOMYG00000015578)	ENSOMYG00000015590	ENSOMYG00000015677	cul1a (ENSOMYG00000016249)	mcm6l (ENSOMYG00000016445) ##22	ahrrb (ENSOMYG00000017717)	exoc3 (ENSOMYG00000017724)	ENSOMYG00000017728	ENSOMYG00000017738	ccr12a (ENSOMYG00000017745)	hecw1b (ENSOMYG00000017931)	COA1 (ENSOMYG00000019912)	blvra (ENSOMYG00000019915)	ENSOMYG00000019923	ENSOMYG00000053907	tgfbr1a (ENSOMYG00000020012)	col15a1b (ENSOMYG00000020722)	ENSOMYG00000021730	kcnh2a (ENSOMYG00000029886)	ENSOMYG00000029913
Huchen	DUPLICATION
Huchen	MODERN SPECIES	580																mcm6l (ENSHHUG00000013787) ##22	ENSHHUG00000014197	ahrrb (ENSHHUG00000014201)	exoc3 (ENSHHUG00000014207)	ENSHHUG00000014215	si:ch211-106n13.3 (ENSHHUG00000014233)	ENSHHUG00000014246	ccr12a (ENSHHUG00000014250)	hecw1b (ENSHHUG00000014263)	ENSHHUG00000014630	COA1 (ENSHHUG00000014633)	blvra (ENSHHUG00000014640)	vopp1a (ENSHHUG00000014656)	tgfbr1a (ENSHHUG00000014681)	col15a1b (ENSHHUG00000014855)	ENSHHUG00000014904
Huchen	MODERN SPECIES	364									ENSHHUG00000019501	ctnnd2b (ENSHHUG00000019513)	ENSHHUG00000020158	GPR141 (ENSHHUG00000020162)	SEC61G (ENSHHUG00000020167)	CNTNAP2 (ENSHHUG00000020189)	cul1a (ENSHHUG00000020224)	mcm6l (ENSHHUG00000020320) ##22	ahrrb (ENSHHUG00000020362)	exoc3 (ENSHHUG00000020368)	ENSHHUG00000020389	ccr12a (ENSHHUG00000020408)	ENSHHUG00000020420	STK17A (ENSHHUG00000020633)	blvra (ENSHHUG00000020647)	tgfbr1a (ENSHHUG00000020651)	col15a1b (ENSHHUG00000020786)	ENSHHUG00000020825	ENSHHUG00000020859	ENSHHUG00000020879
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	2	socs6b (ENSELUG00000013845)	cbln2a (ENSELUG00000013853)	NETO1 (ENSELUG00000013875)	atpsckmt (ENSELUG00000013885)	marchf6 (ENSELUG00000014024)	ANKRD33B (ENSELUG00000014056)	ENSELUG00000029599	ctnnd2b (ENSELUG00000014171)	ENSELUG00000001263	GPR141 (ENSELUG00000014225)	si:dkey-94e7.2 (ENSELUG00000014248)	ENSELUG00000025549	SEC61G (ENSELUG00000014294)	CNTNAP2 (ENSELUG00000014405)	cul1a (ENSELUG00000000528)	mcm6l (ENSELUG00000014529) ##22	ahrrb (ENSELUG00000014692)	exoc3 (ENSELUG00000014759)	ENSELUG00000014792	si:ch211-106n13.3 (ENSELUG00000014995)	ccr12a (ENSELUG00000015053)	hecw1b (ENSELUG00000015087)	STK17A (ENSELUG00000015100)	COA1 (ENSELUG00000015116)	blvra (ENSELUG00000000546)	vopp1a (ENSELUG00000015133)	tgfbr1a (ENSELUG00000015216)	ENSELUG00000015249	SLC12A7 (ENSELUG00000015380)	kcnh2a (ENSELUG00000015437)	ENSELUG00000000575
Northern pike	MODERN SPECIES	2	zp3f.1 (ENSELUG00000004558)	homeza (ENSELUG00000027804)	dhrs1 (ENSELUG00000004588)	ENSELUG00000004617	ap1g2 (ENSELUG00000004678)	ENSELUG00000004728	prmt5 (ENSELUG00000004788)	PSMB11 (ENSELUG00000004833)	psmb5 (ENSELUG00000028174)	ENSELUG00000004935	carmil3 (ENSELUG00000004977)	rem2 (ENSELUG00000005002)	ENSELUG00000000141	abhd4 (ENSELUG00000005077)	ENSELUG00000005087	mcm6 (ENSELUG00000005133) ##22	si:ch73-71c20.5 (ENSELUG00000005190)	tmbim1a (ENSELUG00000000144)	catip (ENSELUG00000005308)	ENSELUG00000027375	casp20 (ENSELUG00000005348)	ENSELUG00000028036	ENSELUG00000005354	ENSELUG00000005408	ENSELUG00000005437	PCDH8 (ENSELUG00000005445)	CNMD (ENSELUG00000005469)	sugt1 (ENSELUG00000005520)	ENSELUG00000005579	ednrba (ENSELUG00000005635)	SLC25A30 (ENSELUG00000000158)
Acanthomorphata	ANCESTRAL SPECIES	57	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00940000162889	ENSGT01030000235116	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961
Cod	DUPLICATION
Cod	MODERN SPECIES	21	ENSGMOG00000016719	ENSGMOG00000029076	ENSGMOG00000024597	ENSGMOG00000016725	ENSGMOG00000012342	ENSGMOG00000026489	ENSGMOG00000030923	ENSGMOG00000023637	xkr4 (ENSGMOG00000014463)	tmem68 (ENSGMOG00000014683)	ENSGMOG00000015087	ENSGMOG00000018167	ENSGMOG00000026177	ENSGMOG00000016365	cul1a (ENSGMOG00000005996)	ENSGMOG00000036101 ##22	ENSGMOG00000036319	exoc3 (ENSGMOG00000019653)	ENSGMOG00000030943	ENSGMOG00000019656	ENSGMOG00000031093	ENSGMOG00000025129	ENSGMOG00000020143	ENSGMOG00000035086	ENSGMOG00000006513	ENSGMOG00000024830	ENSGMOG00000006484	ENSGMOG00000022551	ENSGMOG00000006907	ENSGMOG00000037071	ENSGMOG00000033719
Cod	MODERN SPECIES	21	ENSGMOG00000035026	SCN10A (ENSGMOG00000004332)	ENSGMOG00000029459	ENSGMOG00000033354	ENSGMOG00000032344	ENSGMOG00000027364	ENSGMOG00000004197	ENSGMOG00000004173	ENSGMOG00000004135	ENSGMOG00000004116	zgc:171772 (ENSGMOG00000031332)	ENSGMOG00000004088	ENSGMOG00000004078	ENSGMOG00000001881	ENSGMOG00000012635	mcm6 (ENSGMOG00000004027) ##22	ENSGMOG00000030136	tmbim1a (ENSGMOG00000003982)	ENSGMOG00000024183	ENSGMOG00000008471	ENSGMOG00000032452	ENSGMOG00000034524	ENSGMOG00000030246	ENSGMOG00000027381	ENSGMOG00000034980	ENSGMOG00000037079	ENSGMOG00000024351	ENSGMOG00000025016	ENSGMOG00000022644	ENSGMOG00000016866	PCDH8 (ENSGMOG00000032568)
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT00940000162889	ENSGT01030000235116	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT01030000235116	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000156207.b.c.a.b	ENSGT00940000162179.e.b.a.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Climbing perch	MODERN SPECIES	8	SCN10A (ENSATEG00000005946)	ENSATEG00000028156	ENSATEG00000005936	ENSATEG00000027770	ENSATEG00000005497	ENSATEG00000005475	ENSATEG00000005444	ENSATEG00000005434	ENSATEG00000005382	zgc:171772 (ENSATEG00000026179)	ENSATEG00000005362	ENSATEG00000026294	ENSATEG00000004305	ENSATEG00000004834	ENSATEG00000004241	mcm6 (ENSATEG00000004164) ##22	ENSATEG00000025336	tmbim1a (ENSATEG00000004076)	ENSATEG00000004046	ENSATEG00000003962	ENSATEG00000003956	ENSATEG00000003950	ENSATEG00000003945	PCDH8 (ENSATEG00000003916)	ENSATEG00000003863	SUGT1 (ENSATEG00000003854)	ENSATEG00000003846	ENSATEG00000003790	ENSATEG00000003744	ENSATEG00000003716	gad1b (ENSATEG00000003651)
Siamese fighting fish	MODERN SPECIES	8	xpr1b (ENSBSLG00000021918)	ENSBSLG00000021773	dnai4 (ENSBSLG00000021733)	fam151a (ENSBSLG00000021706)	ACOT11 (ENSBSLG00000021214)	mrpl37 (ENSBSLG00000021024)	csnk1g2a (ENSBSLG00000020175)	mfsd12a (ENSBSLG00000020106)	DEPDC5 (ENSBSLG00000019842)	rab36 (ENSBSLG00000019780)	ENSBSLG00000019453	ENSBSLG00000019036	PLPPR5 (ENSBSLG00000018839)	tyw3 (ENSBSLG00000018799)	ENSBSLG00000018750	mcm6 (ENSBSLG00000018476) ##22	ENSBSLG00000018466	ENSBSLG00000018459	tmbim1a (ENSBSLG00000018407)	ENSBSLG00000018388	catip (ENSBSLG00000018333)	ENSBSLG00000018300	ENSBSLG00000018250	PCDH8 (ENSBSLG00000018246)	CNMD (ENSBSLG00000018229)	sugt1 (ENSBSLG00000018175)	ENSBSLG00000017880	EDNRB (ENSBSLG00000017822)	SLC25A30 (ENSBSLG00000017122)	gad1b (ENSBSLG00000016247)	gorasp2 (ENSBSLG00000016209)
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000028043	ENSMAMG00000027278	ENSMAMG00000017107	ENSMAMG00000017115	ENSMAMG00000017127	ENSMAMG00000017153	ENSMAMG00000017206	ENSMAMG00000017247	ENSMAMG00000017254	RPL37A (ENSMAMG00000025523)	ENSMAMG00000017299	ENSMAMG00000017310	ENSMAMG00000025990	ENSMAMG00000017350	ENSMAMG00000017381	mcm6 (ENSMAMG00000017407) ##22	ENSMAMG00000024961	tmbim1a (ENSMAMG00000017445)	ENSMAMG00000017473	ENSMAMG00000017490	ENSMAMG00000017528	ENSMAMG00000026814	ENSMAMG00000017560	PCDH8 (ENSMAMG00000017581)	ENSMAMG00000017601	SUGT1 (ENSMAMG00000017641)	ENSMAMG00000017665	ENSMAMG00000017721	SLC25A30 (ENSMAMG00000024526)	ENSMAMG00000017755	gad1b (ENSMAMG00000017768)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a
Tongue sole	MODERN SPECIES	12	ENSCSEG00000009110	gorasp1a (ENSCSEG00000009096)	wdr48b (ENSCSEG00000009078)	scn12aa (ENSCSEG00000009036)	COL6A2 (ENSCSEG00000008970)	COL6A1 (ENSCSEG00000008939)	ENSCSEG00000008906	zgc:162816 (ENSCSEG00000008880)	ENSCSEG00000008869	ENSCSEG00000008857	CFAP410 (ENSCSEG00000008848)	zgc:171772 (ENSCSEG00000008838)	pecr (ENSCSEG00000008830)	NDUFB3 (ENSCSEG00000008825)	ENSCSEG00000018910	mcm6 (ENSCSEG00000018899) ##22	ENSCSEG00000018895	tmbim1a (ENSCSEG00000018889)	ENSCSEG00000018879	ENSCSEG00000018871	ENSCSEG00000018865	PCDH8 (ENSCSEG00000018861)	CNMD (ENSCSEG00000018849)	sugt1 (ENSCSEG00000018819)	ENSCSEG00000018803	EDNRB (ENSCSEG00000018794)	SLC25A30 (ENSCSEG00000018781)	gad1b (ENSCSEG00000018765)	gorasp2 (ENSCSEG00000018760)	DIS3L2 (ENSCSEG00000018729)	tlk1b (ENSCSEG00000018660)
Turbot	MODERN SPECIES	19	WDR48 (ENSSMAG00000013263)	SCN10A (ENSSMAG00000013220)	ENSSMAG00000030075	ENSSMAG00000025581	ENSSMAG00000013204	ENSSMAG00000013078	ENSSMAG00000012981	ENSSMAG00000012959	ENSSMAG00000012921	ENSSMAG00000024744	zgc:171772 (ENSSMAG00000012875)	ENSSMAG00000012806	ENSSMAG00000036173	ENSSMAG00000012795	ENSSMAG00000012773	mcm6 (ENSSMAG00000012730) ##22	ENSSMAG00000012699	tmbim1a (ENSSMAG00000012690)	ENSSMAG00000012669	ENSSMAG00000012660	ENSSMAG00000012651	ENSSMAG00000012642	ENSSMAG00000023466	PCDH8 (ENSSMAG00000012636)	ENSSMAG00000012621	SUGT1 (ENSSMAG00000024976)	ENSSMAG00000012560	ENSSMAG00000012545	ENSSMAG00000012506	ENSSMAG00000012497	gad1b (ENSSMAG00000012433)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00390000017846
Seriola	ANCESTRAL SPECIES		ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a.bb	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Yellowtail amberjack	MODERN SPECIES	3040	wdr48b (ENSSLDG00000003419)	scn12aa (ENSSLDG00000003505)	ENSSLDG00000003581	ENSSLDG00000003601	ENSSLDG00000003627	COL6A1 (ENSSLDG00000003661)	COL6A2 (ENSSLDG00000003892)	zgc:162816 (ENSSLDG00000003940)	ENSSLDG00000004011	ENSSLDG00000004107	zgc:171772 (ENSSLDG00000004137)	pecr (ENSSLDG00000004153)	ndufb3 (ENSSLDG00000004168)	ENSSLDG00000004228	ENSSLDG00000004266	mcm6 (ENSSLDG00000004301) ##22	si:ch73-71c20.5 (ENSSLDG00000004439)	tmbim1a (ENSSLDG00000004383)	casp8 (ENSSLDG00000004467)	catip (ENSSLDG00000004538)	ENSSLDG00000004567	ENSSLDG00000004580	ENSSLDG00000004613	PCDH8 (ENSSLDG00000004654)	CNMD (ENSSLDG00000004666)	sugt1 (ENSSLDG00000004695)	ENSSLDG00000004721	EDNRB (ENSSLDG00000004739)	SLC25A30 (ENSSLDG00000004780)	ENSSLDG00000004825	gad1b (ENSSLDG00000004858)
Greater amberjack	MODERN SPECIES	83	scn12aa (ENSSDUG00000001440)	ENSSDUG00000001563	ENSSDUG00000001571	ENSSDUG00000001579	COL6A1 (ENSSDUG00000001601)	COL6A2 (ENSSDUG00000001666)	zgc:162816 (ENSSDUG00000001729)	ENSSDUG00000001777	CFAP410 (ENSSDUG00000001849)	zgc:171772 (ENSSDUG00000001871)	pecr (ENSSDUG00000001914)	ENSSDUG00000002092	ndufb3 (ENSSDUG00000003670)	ENSSDUG00000003772	ENSSDUG00000004541	mcm6 (ENSSDUG00000004616) ##22	si:ch73-71c20.5 (ENSSDUG00000004646)	ENSSDUG00000004661	ENSSDUG00000004716	catip (ENSSDUG00000004956)	ENSSDUG00000004989	ENSSDUG00000005060	PCDH8 (ENSSDUG00000005067)	CNMD (ENSSDUG00000005077)	sugt1 (ENSSDUG00000005094)	ENSSDUG00000005115	EDNRB (ENSSDUG00000005134)	SLC25A30 (ENSSDUG00000005159)	gad1b (ENSSDUG00000005208)	ENSSDUG00000005232	tlk1b (ENSSDUG00000005254)
Barramundi perch	MODERN SPECIES	69	wdr48b (ENSLCAG00010005070)	ENSLCAG00010005046	scn12aa (ENSLCAG00010005031)	ENSLCAG00010004999	ENSLCAG00010004993	COL6A1 (ENSLCAG00010004981)	COL6A2 (ENSLCAG00010004372)	zgc:162816 (ENSLCAG00010004229)	ENSLCAG00010004223	ENSLCAG00010004220	zgc:171772 (ENSLCAG00010004217)	pecr (ENSLCAG00010004212)	ndufb3 (ENSLCAG00010004204)	ENSLCAG00010004198	ENSLCAG00010004193	mcm6 (ENSLCAG00010004114) ##22	tmbim1a (ENSLCAG00010004084)	ENSLCAG00010004041	catip (ENSLCAG00010004011)	ENSLCAG00010004006	ENSLCAG00010004002	ENSLCAG00010003996	PCDH8 (ENSLCAG00010003994)	CNMD (ENSLCAG00010003989)	sugt1 (ENSLCAG00010003983)	ENSLCAG00010003981	EDNRB (ENSLCAG00010003973)	SLC25A30 (ENSLCAG00010003958)	erich2 (ENSLCAG00010003954)	gad1b (ENSLCAG00010003830)	gorasp2 (ENSLCAG00010003782)
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f
Tetraodon	MODERN SPECIES	6	CSRNP1 (ENSTNIG00000007919)	gorasp1a (ENSTNIG00000007918)	wdr48b (ENSTNIG00000007917)	scn12aa (ENSTNIG00000007916)	ENSTNIG00000001343	COL6A1 (ENSTNIG00000007915)	COL6A2 (ENSTNIG00000007914)	zgc:162816 (ENSTNIG00000007913)	ORC2 (ENSTNIG00000007912)	ENSTNIG00000007911	zgc:171772 (ENSTNIG00000007910)	pecr (ENSTNIG00000007909)	ndufb3 (ENSTNIG00000007908)	ENSTNIG00000007907	ENSTNIG00000007906	mcm6 (ENSTNIG00000007905) ##22	si:ch73-71c20.5 (ENSTNIG00000007904)	tmbim1a (ENSTNIG00000007903)	ENSTNIG00000007902	ENSTNIG00000000751	PCDH8 (ENSTNIG00000007901)	CNMD (ENSTNIG00000007900)	sugt1 (ENSTNIG00000007899)	ENSTNIG00000007898	EDNRB (ENSTNIG00000007897)	SLC25A30 (ENSTNIG00000007896)	gad1b (ENSTNIG00000007895)	gorasp2 (ENSTNIG00000007894)	tlk1b (ENSTNIG00000007893)	ENSTNIG00000007892	DIS3L2 (ENSTNIG00000007891)
Fugu	MODERN SPECIES	14	CSRNP1 (ENSTRUG00000006981)	gorasp1a (ENSTRUG00000006956)	wdr48b (ENSTRUG00000006525)	scn12aa (ENSTRUG00000005719)	ENSTRUG00000025717	COL6A1 (ENSTRUG00000005091)	COL6A2 (ENSTRUG00000004264)	zgc:162816 (ENSTRUG00000024619)	ENSTRUG00000003785	ENSTRUG00000031772	zgc:171772 (ENSTRUG00000003459)	pecr (ENSTRUG00000003174)	ndufb3 (ENSTRUG00000025720)	ENSTRUG00000025427	ENSTRUG00000010667	mcm6 (ENSTRUG00000010252) ##22	ENSTRUG00000021265	tmbim1a (ENSTRUG00000010108)	ENSTRUG00000009742	ENSTRUG00000009662	ENSTRUG00000009617	ENSTRUG00000009599	PCDH8 (ENSTRUG00000009481)	CNMD (ENSTRUG00000009328)	sugt1 (ENSTRUG00000009211)	ENSTRUG00000024450	EDNRB (ENSTRUG00000008869)	SLC25A30 (ENSTRUG00000008508)	gad1b (ENSTRUG00000022855)	gorasp2 (ENSTRUG00000007936)	tlk1b (ENSTRUG00000007408)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Ballan wrasse	MODERN SPECIES	10	ENSLBEG00000003714	ENSLBEG00000003724	angptl6 (ENSLBEG00000003756)	ENSLBEG00000003817	ENSLBEG00000003845	COL6A1 (ENSLBEG00000003883)	COL6A2 (ENSLBEG00000003980)	zgc:162816 (ENSLBEG00000004144)	ENSLBEG00000004202	CFAP410 (ENSLBEG00000004239)	zgc:171772 (ENSLBEG00000004282)	pecr (ENSLBEG00000004318)	ndufb3 (ENSLBEG00000004336)	ENSLBEG00000004369	ENSLBEG00000004389	mcm6 (ENSLBEG00000004424) ##22	ENSLBEG00000004475	tmbim1a (ENSLBEG00000004490)	ENSLBEG00000004518	catip (ENSLBEG00000004572)	ENSLBEG00000004605	ENSLBEG00000004657	CXorf38 (ENSLBEG00000004672)	PCDH8 (ENSLBEG00000004693)	ENSLBEG00000004711	CNMD (ENSLBEG00000004776)	sugt1 (ENSLBEG00000004802)	ENSLBEG00000004840	EDNRB (ENSLBEG00000004898)	SLC25A30 (ENSLBEG00000004934)	ENSLBEG00000004963
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Perciformes	ANCESTRAL SPECIES	5	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Perciformes_a	ANCESTRAL SPECIES	24	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a
Pike perch	MODERN SPECIES	207	ENSSLUG00000002940	ENSSLUG00000002952	ENSSLUG00000002985	COL6A1 (ENSSLUG00000002999)	COL6A2 (ENSSLUG00000003127)	zgc:162816 (ENSSLUG00000003494)	ENSSLUG00000003504	ENSSLUG00000003566	ENSSLUG00000004098	zgc:171772 (ENSSLUG00000004219)	pecr (ENSSLUG00000004227)	ndufb3 (ENSSLUG00000004240)	ENSSLUG00000004303	ENSSLUG00000004843	ENSSLUG00000004889	mcm6 (ENSSLUG00000004893) ##22	si:ch73-71c20.5 (ENSSLUG00000004905)	tmbim1a (ENSSLUG00000004916)	casp8 (ENSSLUG00000004946)	catip (ENSSLUG00000004969)	ENSSLUG00000004973	ENSSLUG00000004977	PCDH8 (ENSSLUG00000004989)	CNMD (ENSSLUG00000005109)	sugt1 (ENSSLUG00000005124)	ENSSLUG00000005140	EDNRB (ENSSLUG00000005149)	SLC25A30 (ENSSLUG00000005172)	ENSSLUG00000005296	gad1b (ENSSLUG00000005575)	gorasp2 (ENSSLUG00000009206)
Channel bull blenny	MODERN SPECIES	8	wdr48b (ENSCGOG00000010075)	scn12aa (ENSCGOG00000010653)	ENSCGOG00000011534	ENSCGOG00000011536	ENSCGOG00000011537	COL6A1 (ENSCGOG00000011545)	COL6A2 (ENSCGOG00000011581)	zgc:162816 (ENSCGOG00000011629)	ENSCGOG00000011645	ENSCGOG00000012027	zgc:171772 (ENSCGOG00000012030)	pecr (ENSCGOG00000012036)	ndufb3 (ENSCGOG00000012039)	ENSCGOG00000012043	ENSCGOG00000012138	mcm6 (ENSCGOG00000012197) ##22	TMBIM1 (ENSCGOG00000013454)	casp8 (ENSCGOG00000013460)	catip (ENSCGOG00000013520)	ENSCGOG00000013523	ENSCGOG00000013528	PCDH8 (ENSCGOG00000013531)	CNMD (ENSCGOG00000013533)	sugt1 (ENSCGOG00000013536)	ENSCGOG00000013540	EDNRB (ENSCGOG00000013553)	SLC25A30 (ENSCGOG00000013776)	ENSCGOG00000014009	gad1b (ENSCGOG00000014106)	gorasp2 (ENSCGOG00000017114)	tlk1b (ENSCGOG00000017189)
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00950000183072.a.a.b	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Lumpfish	MODERN SPECIES	8	wdr48b (ENSCLMG00005014412)	scn12aa (ENSCLMG00005014617)	ENSCLMG00005014618	ENSCLMG00005014620	ENSCLMG00005014621	ENSCLMG00005014623	COL6A2 (ENSCLMG00005014624)	zgc:162816 (ENSCLMG00005014838)	ENSCLMG00005014840	ENSCLMG00005014860	zgc:171772 (ENSCLMG00005014863)	pecr (ENSCLMG00005014866)	ndufb3 (ENSCLMG00005014867)	ENSCLMG00005014869	ENSCLMG00005014871	mcm6 (ENSCLMG00005014873) ##22	ENSCLMG00005014898	tmbim1a (ENSCLMG00005014899)	ENSCLMG00005014902	catip (ENSCLMG00005014904)	ENSCLMG00005014908	ENSCLMG00005014909	ENSCLMG00005014911	PCDH8 (ENSCLMG00005014912)	CNMD (ENSCLMG00005014914)	sugt1 (ENSCLMG00005014917)	ENSCLMG00005014920	EDNRB (ENSCLMG00005001371)	SLC25A30 (ENSCLMG00005001426)	ENSCLMG00005001473	GAD1 (ENSCLMG00005001502)
Stickleback	MODERN SPECIES	2	gorasp1a (ENSGACG00000012659)	wdr48b (ENSGACG00000012625)	scn12aa (ENSGACG00000012613)	ENSGACG00000012611	COL6A1 (ENSGACG00000012576)	COL6A2 (ENSGACG00000012518)	zgc:162816 (ENSGACG00000012508)	ENSGACG00000012499	CFAP410 (ENSGACG00000012486)	zgc:171772 (ENSGACG00000012484)	pecr (ENSGACG00000012451)	ndufb3 (ENSGACG00000012447)	ugt1b5 (ENSGACG00000012390)	ENSGACG00000012387	ENSGACG00000012386	mcm6 (ENSGACG00000012377) ##22	si:ch73-71c20.5 (ENSGACG00000012375)	tmbim1a (ENSGACG00000012369)
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
Gilthead seabream	MODERN SPECIES	13	wdr48b (ENSSAUG00010024104)	scn12aa (ENSSAUG00010024161)	ENSSAUG00010025202	ENSSAUG00010025204	ENSSAUG00010025207	COL6A1 (ENSSAUG00010025210)	COL6A2 (ENSSAUG00010025268)	zgc:162816 (ENSSAUG00010025838)	ENSSAUG00010025841	ENSSAUG00010025844	zgc:171772 (ENSSAUG00010025846)	pecr (ENSSAUG00010025847)	NDUFB3 (ENSSAUG00010025848)	ENSSAUG00010025856	ENSSAUG00010002800	mcm6 (ENSSAUG00010002843) ##22	tmbim1a (ENSSAUG00010002960)	ENSSAUG00010003126	catip (ENSSAUG00010003163)	ENSSAUG00010003169	ENSSAUG00010003175	ENSSAUG00010003184	ENSSAUG00010003192	dcun1d1 (ENSSAUG00010003208)	SETD9 (ENSSAUG00010003239)	eif4a2 (ENSSAUG00010003297)	b3gnt5b (ENSSAUG00010006833)	tbl1xr1b (ENSSAUG00010006837)	kcnmb2 (ENSSAUG00010006862)	PIK3CA (ENSSAUG00010006864)	KCNMB3 (ENSSAUG00010006868)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00390000017846	ENSGT00940000155526.i.b
European seabass	MODERN SPECIES		SCN10A (ENSDLAG00005023531)	ENSDLAG00005023879	ENSDLAG00005034014	ENSDLAG00005023884	ENSDLAG00005023888	ENSDLAG00005033968	ENSDLAG00005023911	ENSDLAG00005024052	ENSDLAG00005024073	ENSDLAG00005029086	zgc:171772 (ENSDLAG00005024258)	ENSDLAG00005024261	ENSDLAG00005034460	ENSDLAG00005033709	ENSDLAG00005024273	ENSDLAG00005024278 ##22	ENSDLAG00005030522	ENSDLAG00005024300	ENSDLAG00005024364	ENSDLAG00005034463	ENSDLAG00005024370	ENSDLAG00005028336	ENSDLAG00005024373	PCDH8 (ENSDLAG00005024377)	ENSDLAG00005024381	SUGT1 (ENSDLAG00005024387)	ENSDLAG00005029039	ENSDLAG00005024400	ENSDLAG00005024406	gad1b (ENSDLAG00005000274)	ENSDLAG00005000858
Large yellow croaker	MODERN SPECIES	481	wdr48b (ENSLCRG00005022729)	ENSLCRG00005022723	scn12aa (ENSLCRG00005016742)	ENSLCRG00005016652	ENSLCRG00005016651	COL6A1 (ENSLCRG00005016650)	COL6A2 (ENSLCRG00005013465)	zgc:162816 (ENSLCRG00005013426)	ENSLCRG00005013406	ENSLCRG00005013405	zgc:171772 (ENSLCRG00005013403)	pecr (ENSLCRG00005013401)	ndufb3 (ENSLCRG00005013397)	ENSLCRG00005013396	ENSLCRG00005013394	mcm6 (ENSLCRG00005013382) ##22	ENSLCRG00005013379	tmbim1a (ENSLCRG00005013376)	ENSLCRG00005013373	ENSLCRG00005013372	ENSLCRG00005013371	ENSLCRG00005013366	ENSLCRG00005013363	PCDH8 (ENSLCRG00005013361)	CNMD (ENSLCRG00005013359)	sugt1 (ENSLCRG00005013354)	ENSLCRG00005013351	EDNRB (ENSLCRG00005013348)	SLC25A30 (ENSLCRG00005013326)	ENSLCRG00005013321	ENSLCRG00005013320
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT00940000162179.e.b.a.a.b	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.i	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a	ENSGT00940000164225.u	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000154992.a.a	ENSGT00940000153582.a.n	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a.e	ENSGT00940000164225.u	ENSGT00940000166591.j.b.b	ENSGT01030000234768.a.a.b	ENSGT01100000263483.E.b.b.s.b	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000263519.A.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055.c.a	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a.e	ENSGT00940000164225.u.b	ENSGT00940000166591.j.b.b	ENSGT01030000234768.a.a.b	ENSGT01100000263483.E.b.b.s.b	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b
Burton s mouthbrooder	MODERN SPECIES	1216														ndufb3 (ENSHBUG00000011742)	ENSHBUG00000011751	mcm6 (ENSHBUG00000011797) ##22	si:ch73-71c20.5 (ENSHBUG00000011812)	tmbim1a (ENSHBUG00000011823)	ENSHBUG00000011865	ENSHBUG00000011964
Haplochromini_A	ANCESTRAL SPECIES	48	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a.r	ENSGT00940000155899.e.b.f	ENSGT00940000156209.v.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055.d	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a	ENSGT00940000154101.a.e.b	ENSGT00940000164225.u.a.b
Haplochromini_B	ANCESTRAL SPECIES	52	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000018807	ENSGT00390000015228	ENSGT00390000016988.b	ENSGT00940000156882.q	ENSGT00940000159677.a.a.q	ENSGT00940000156882.r	ENSGT00390000010316	ENSGT00940000159677.a.a.r	ENSGT00940000155899.e.b.f	ENSGT00940000156209.v.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055.d	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591.j.a.a	ENSGT00940000154101.a.e.b	ENSGT00940000164225.u.a.b
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1100	COL6A1 (ENSMZEG00005011386)	ENSMZEG00005011371	COL6A2 (ENSMZEG00005011331)	ENSMZEG00005011275	zgc:162816 (ENSMZEG00005011238)	CFAP410 (ENSMZEG00005011225)	ENSMZEG00005011216	zgc:171772 (ENSMZEG00005011203)	pecr (ENSMZEG00005011199)	ENSMZEG00005011194	pecr (ENSMZEG00005011186)	ndufb3 (ENSMZEG00005011181)	ENSMZEG00005011169	dnai4 (ENSMZEG00005011154)	ENSMZEG00005011138	mcm6 (ENSMZEG00005011109) ##22	si:ch73-71c20.5 (ENSMZEG00005011092)	tmbim1a (ENSMZEG00005011084)	ENSMZEG00005011051	catip (ENSMZEG00005011036)	casp20 (ENSMZEG00005011021)	ENSMZEG00005011006	ENSMZEG00005010998	catip (ENSMZEG00005010978)	ENSMZEG00005010926	ENSMZEG00005010900	ENSMZEG00005010884	casp20 (ENSMZEG00005010871)	ENSMZEG00005010865	kifap3b (ENSMZEG00005010840)	ENSMZEG00005010824
Zebra mbuna	MODERN SPECIES	599															ENSMZEG00005026163	mcm6 (ENSMZEG00005026160) ##22	si:ch73-71c20.5 (ENSMZEG00005026159)	tmbim1a (ENSMZEG00005026158)	ENSMZEG00005026157	catip (ENSMZEG00005026156)	casp20 (ENSMZEG00005026149)
Eastern happy	MODERN SPECIES	9	COL6A2 (ENSACLG00000018257)	zgc:162816 (ENSACLG00000018166)	CFAP410 (ENSACLG00000018102)	ENSACLG00000018079	zgc:171772 (ENSACLG00000018074)	pecr (ENSACLG00000017995)	ENSACLG00000017946	ENSACLG00000017892	ENSACLG00000017881	pecr (ENSACLG00000017843)	ndufb3 (ENSACLG00000017834)	ENSACLG00000017673	ENSACLG00000017664	dnai4 (ENSACLG00000017642)	ENSACLG00000017624	mcm6 (ENSACLG00000017551) ##22	si:ch73-71c20.5 (ENSACLG00000017533)	tmbim1a (ENSACLG00000017510)	ENSACLG00000017484	catip (ENSACLG00000017420)	casp20 (ENSACLG00000017306)	ENSACLG00000017297	casp20 (ENSACLG00000017249)	ENSACLG00000017208	catip (ENSACLG00000017175)	ENSACLG00000016939	ENSACLG00000016921	ENSACLG00000016913	ENSACLG00000016904	ENSACLG00000016872	ENSACLG00000016845
P. nyererei	MODERN SPECIES	393	scn12aa (ENSPNYG00000017194)	ENSPNYG00000017178	ENSPNYG00000017164	COL6A1 (ENSPNYG00000017103)	ENSPNYG00000017081	COL6A2 (ENSPNYG00000017040)	zgc:162816 (ENSPNYG00000016998)	ENSPNYG00000016961	CFAP410 (ENSPNYG00000016941)	zgc:171772 (ENSPNYG00000016933)	pecr (ENSPNYG00000016916)	ndufb3 (ENSPNYG00000016905)	ENSPNYG00000016881	dnai4 (ENSPNYG00000016758)	ENSPNYG00000016703	mcm6 (ENSPNYG00000016641) ##22	si:ch73-71c20.5 (ENSPNYG00000016615)	tmbim1a (ENSPNYG00000016601)	ENSPNYG00000016559	catip (ENSPNYG00000016518)
Lyretail cichlid	MODERN SPECIES	385	scn12aa (ENSNBRG00000016232)	ENSNBRG00000016215	ENSNBRG00000016199	ENSNBRG00000016192	COL6A1 (ENSNBRG00000016134)	COL6A2 (ENSNBRG00000016081)	zgc:162816 (ENSNBRG00000016049)	ORC2 (ENSNBRG00000015996)	CFAP410 (ENSNBRG00000015978)	zgc:171772 (ENSNBRG00000015974)	pecr (ENSNBRG00000015935)	pecr (ENSNBRG00000015880)	ndufb3 (ENSNBRG00000015867)	ENSNBRG00000015856	dnai4 (ENSNBRG00000015805)	mcm6 (ENSNBRG00000015764) ##22	si:ch73-71c20.5 (ENSNBRG00000015752)	tmbim1a (ENSNBRG00000015690)	ENSNBRG00000015572	catip (ENSNBRG00000015541)
Nile tilapia	MODERN SPECIES	9	ENSONIG00000042464	ENSONIG00000041590	COL6A1 (ENSONIG00000015644)	ENSONIG00000040009	COL6A2 (ENSONIG00000015650)	zgc:162816 (ENSONIG00000034736)	ENSONIG00000015654	ENSONIG00000032347	cfap410 (ENSONIG00000040731)	zgc:171772 (ENSONIG00000033651)	pecr (ENSONIG00000035602)	ENSONIG00000015663	ndufb3 (ENSONIG00000031322)	ENSONIG00000042403	ENSONIG00000015664	mcm6 (ENSONIG00000015669) ##22	ENSONIG00000040121	tmbim1a (ENSONIG00000015676)	ENSONIG00000015679	catip (ENSONIG00000015684)	ENSONIG00000015686	ENSONIG00000036398	ENSONIG00000039614	ENSONIG00000028850	ENSONIG00000035488	ENSONIG00000018708	PCDH8 (ENSONIG00000018706)	CNMD (ENSONIG00000018705)	sugt1 (ENSONIG00000018704)	ENSONIG00000037347	EDNRB (ENSONIG00000018701)
Midas cichlid	MODERN SPECIES	733	wdr48b (ENSACIG00000010825)	ENSACIG00000010815	scn12aa (ENSACIG00000010766)	ENSACIG00000010752	ENSACIG00000010739	COL6A1 (ENSACIG00000010609)	COL6A2 (ENSACIG00000010522)	zgc:162816 (ENSACIG00000010483)	ENSACIG00000010403	CFAP410 (ENSACIG00000010322)	zgc:171772 (ENSACIG00000010196)	pecr (ENSACIG00000010130)	ndufb3 (ENSACIG00000010119)	ENSACIG00000008543	ENSACIG00000008421	mcm6 (ENSACIG00000008382) ##22	si:ch73-71c20.5 (ENSACIG00000008367)	tmbim1a (ENSACIG00000008344)	ENSACIG00000008140	catip (ENSACIG00000008018)	ENSACIG00000007935
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT00940000156207.b.c.a.b	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT01100000263520.a.a.b.a.a	ENSGT00940000158550	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225.w	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414
Amphiprion	ANCESTRAL SPECIES	33	ENSGT01100000263540.A.a	ENSGT00940000160793	ENSGT00940000158550	ENSGT00940000154411	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225.w	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000177650	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414
Clown anemonefish	MODERN SPECIES	1212		ENSAOCG00000009564	scn12aa (ENSAOCG00000009831)	ENSAOCG00000009885	ENSAOCG00000009891	COL6A1 (ENSAOCG00000009982)	COL6A2 (ENSAOCG00000010061)	zgc:162816 (ENSAOCG00000010099)	ENSAOCG00000010181	ENSAOCG00000010197	zgc:171772 (ENSAOCG00000010205)	pecr (ENSAOCG00000010212)	NDUFB3 (ENSAOCG00000010218)	ENSAOCG00000000636	ENSAOCG00000010245	mcm6 (ENSAOCG00000010301) ##22	si:ch73-71c20.5 (ENSAOCG00000010315)	tmbim1a (ENSAOCG00000000645)
Orange clownfish	MODERN SPECIES	1	scn12aa (ENSAPEG00000021441)	ENSAPEG00000021534	ENSAPEG00000021545	ENSAPEG00000021562	COL6A1 (ENSAPEG00000021601)	ENSAPEG00000021652	COL6A2 (ENSAPEG00000021675)	zgc:162816 (ENSAPEG00000021787)	ENSAPEG00000021850	ENSAPEG00000021873	zgc:171772 (ENSAPEG00000021880)	pecr (ENSAPEG00000021896)	NDUFB3 (ENSAPEG00000021914)	ENSAPEG00000021908	ENSAPEG00000021921	mcm6 (ENSAPEG00000021954) ##22	si:ch73-71c20.5 (ENSAPEG00000022027)	tmbim1a (ENSAPEG00000022032)	ENSAPEG00000022053	catip (ENSAPEG00000022095)	casp20 (ENSAPEG00000022112)	ENSAPEG00000022148	ENSAPEG00000022155	ENSAPEG00000022164	PCDH8 (ENSAPEG00000022187)	CNMD (ENSAPEG00000022200)	sugt1 (ENSAPEG00000022228)	ENSAPEG00000022248	EDNRB (ENSAPEG00000022287)	SLC25A30 (ENSAPEG00000022308)	ENSAPEG00000022319
Spiny chromis	MODERN SPECIES	785	wdr48b (ENSAPOG00000010625)	scn12aa (ENSAPOG00000010561)	ENSAPOG00000010500	ENSAPOG00000010489	ENSAPOG00000010471	COL6A1 (ENSAPOG00000010460)	COL6A2 (ENSAPOG00000010321)	zgc:162816 (ENSAPOG00000010209)	ORC2 (ENSAPOG00000010148)	CFAP410 (ENSAPOG00000010129)	zgc:171772 (ENSAPOG00000010110)	pecr (ENSAPOG00000010096)	ndufb3 (ENSAPOG00000010052)	ENSAPOG00000010026	ENSAPOG00000009861	mcm6 (ENSAPOG00000009829) ##22	si:ch73-71c20.5 (ENSAPOG00000009742)	ENSAPOG00000009732	tmbim1a (ENSAPOG00000009678)
Bicolor damselfish	MODERN SPECIES	798	wdr48b (ENSSPAG00000002976)	scn12aa (ENSSPAG00000003026)	ENSSPAG00000003091	ENSSPAG00000003101	ENSSPAG00000003120	COL6A1 (ENSSPAG00000003136)	COL6A2 (ENSSPAG00000003203)	zgc:162816 (ENSSPAG00000003248)	ENSSPAG00000003306	ENSSPAG00000003328	zgc:171772 (ENSSPAG00000003346)	pecr (ENSSPAG00000003362)	ndufb3 (ENSSPAG00000003377)	ENSSPAG00000003512	ENSSPAG00000006307	mcm6 (ENSSPAG00000006313) ##22	tecrb (ENSSPAG00000006381)	dnajb1b (ENSSPAG00000006458)	ENSSPAG00000006486	ENSSPAG00000006501	ENSSPAG00000006511	ENSSPAG00000006526	DNM2 (ENSSPAG00000006561)	tmed1b (ENSSPAG00000006621)	ENSSPAG00000006636	ppap2d (ENSSPAG00000006644)	ENSSPAG00000006663	nxnl1 (ENSSPAG00000006733)	colgalt1b (ENSSPAG00000006764)	ENSSPAG00000006789	slc27a1b (ENSSPAG00000006809)
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Oryzias	ANCESTRAL SPECIES	12	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000154967.a.b.a.b.s	ENSGT00940000177007
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a.n	ENSGT00940000159677.a.a.m	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000154967.a.b.a.b.s	ENSGT00940000177007
Chinese medaka	MODERN SPECIES	720	CSRNP1 (ENSOSIG00000008386)	gorasp1a (ENSOSIG00000008384)	wdr48b (ENSOSIG00000008360)	ENSOSIG00000008349	scn12aa (ENSOSIG00000008348)	ENSOSIG00000008345	COL6A1 (ENSOSIG00000008343)	COL6A2 (ENSOSIG00000008078)	zgc:162816 (ENSOSIG00000008071)	ENSOSIG00000008069	CFAP410 (ENSOSIG00000008067)	zgc:171772 (ENSOSIG00000008063)	ENSOSIG00000007951	pecr (ENSOSIG00000007947)	ENSOSIG00000007946	mcm6 (ENSOSIG00000007855) ##22	ENSOSIG00000007839	ENSOSIG00000007836	casp20 (ENSOSIG00000007834)	ENSOSIG00000007832	ENSOSIG00000007828	ENSOSIG00000007760	PCDH8 (ENSOSIG00000007758)	CNMD (ENSOSIG00000007756)	sugt1 (ENSOSIG00000007755)	ENSOSIG00000007753	EDNRB (ENSOSIG00000007752)	SLC25A30 (ENSOSIG00000007751)	ENSOSIG00000007749	ENSOSIG00000007748	ENSOSIG00000007747
Japanese Medaka HdrR	MODERN SPECIES	8	wdr48b (ENSORLG00000011723)	scn12aa (ENSORLG00000011677)	ENSORLG00000023292	COL6A1 (ENSORLG00000011639)	COL6A2 (ENSORLG00000011584)	zgc:162816 (ENSORLG00000011527)	CFAP410 (ENSORLG00000011489)	ENSORLG00000011520	zgc:171772 (ENSORLG00000011476)	dnai2b (ENSORLG00000011467)	pecr (ENSORLG00000011446)	ndufb3 (ENSORLG00000011424)	ENSORLG00000011416	ENSORLG00000011385	ENSORLG00000011337	mcm6 (ENSORLG00000011329) ##22	ENSORLG00000011254	tmbim1a (ENSORLG00000011243)	casp8 (ENSORLG00000011198)	catip (ENSORLG00000011164)	ENSORLG00000011148	ENSORLG00000011139	ENSORLG00000011133	PCDH8 (ENSORLG00000011123)	CNMD (ENSORLG00000011111)	ENSORLG00000023684	sugt1 (ENSORLG00000011085)	ENSORLG00000024910	EDNRB (ENSORLG00000011054)	ENSORLG00000029711	SLC25A30 (ENSORLG00000011023)
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000163996	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000154967.a.b.a.b.s	ENSGT00940000177007
Indian medaka	MODERN SPECIES	10	wdr48b (ENSOMEG00000011918)	scn12aa (ENSOMEG00000011796)	ENSOMEG00000011773	ENSOMEG00000011763	COL6A1 (ENSOMEG00000011685)	COL6A2 (ENSOMEG00000011588)	zgc:162816 (ENSOMEG00000011546)	ENSOMEG00000011518	CFAP410 (ENSOMEG00000011451)	zgc:171772 (ENSOMEG00000011431)	ENSOMEG00000011410	pecr (ENSOMEG00000000269)	ENSOMEG00000011349	ndufb3 (ENSOMEG00000011326)	ENSOMEG00000011306	mcm6 (ENSOMEG00000011275) ##22	ENSOMEG00000011181	tmbim1a (ENSOMEG00000011233)	ENSOMEG00000011171	ENSOMEG00000011143	ENSOMEG00000011100	ENSOMEG00000011057	ENSOMEG00000011041	sugt1 (ENSOMEG00000011010)	PCDH8 (ENSOMEG00000010861)	CNMD (ENSOMEG00000010841)	ENSOMEG00000010813	EDNRB (ENSOMEG00000010796)	SLC25A30 (ENSOMEG00000010754)	ENSOMEG00000010667	ENSOMEG00000010537
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00920000149157.c	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060
Poecilia	ANCESTRAL SPECIES	19	ENSGT00920000149157.c	ENSGT01100000264009	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818	ENSGT00940000155161	ENSGT00940000156200.A	ENSGT00940000159742.rb	ENSGT00940000154805.b.g.e.b.c	ENSGT00940000167286	ENSGT00940000154805.b.g.f	ENSGT00940000154805.b.g.e.b.d	ENSGT00940000159432.C	ENSGT00530000063693.a.a	ENSGT00940000166060
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	89	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b.a	ENSGT01050000244824.D.b.t ##22	ENSGT01050000244848.C.b.b	ENSGT01050000244824.D.b.s ##22	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818
Sailfin molly	MODERN SPECIES	1342															ENSPLAG00000021616	mcm6 (ENSPLAG00000021642) ##22	xrn1 (ENSPLAG00000021653)	cop1 (ENSPLAG00000021712)	PAPPA2 (ENSPLAG00000022051)
Amazon molly	MODERN SPECIES	301	ENSPFOG00000015385	COL6A1 (ENSPFOG00000015131)	ENSPFOG00000024796	COL6A2 (ENSPFOG00000014799)	zgc:162816 (ENSPFOG00000014753)	ENSPFOG00000014686	CFAP410 (ENSPFOG00000014666)	zgc:171772 (ENSPFOG00000014663)	pecr (ENSPFOG00000014634)	ndufb3 (ENSPFOG00000014627)	ENSPFOG00000014557	ENSPFOG00000024559	ENSPFOG00000014542	mcm6 (ENSPFOG00000014432) ##22	ENSPFOG00000014406	mcm6 (ENSPFOG00000014294) ##22	xrn1 (ENSPFOG00000013932)	cop1 (ENSPFOG00000013768)	PAPPA2 (ENSPFOG00000013446)	ASTN1 (ENSPFOG00000013059)	brinp2 (ENSPFOG00000012910)
NAME_6	ANCESTRAL SPECIES	89	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT00530000066553	ENSGT01050000244848.C.b.a	ENSGT01050000244824.D.b.t ##22	ENSGT01050000244848.C.b.b	ENSGT01050000244824.D.b.s ##22	ENSGT00670000098080	ENSGT00920000149161	ENSGT00940000158543	ENSGT00390000003140.A	ENSGT00940000165818
Sailfin molly	MODERN SPECIES	3402															ENSPLAG00000018740	mcm6 (ENSPLAG00000018797) ##22
Amazon molly	MODERN SPECIES	301	wdr48b (ENSPFOG00000015559)	scn12aa (ENSPFOG00000015400)	ENSPFOG00000015385	COL6A1 (ENSPFOG00000015131)	ENSPFOG00000024796	COL6A2 (ENSPFOG00000014799)	zgc:162816 (ENSPFOG00000014753)	ENSPFOG00000014686	CFAP410 (ENSPFOG00000014666)	zgc:171772 (ENSPFOG00000014663)	pecr (ENSPFOG00000014634)	ndufb3 (ENSPFOG00000014627)	ENSPFOG00000014557	ENSPFOG00000024559	ENSPFOG00000014542	mcm6 (ENSPFOG00000014432) ##22	ENSPFOG00000014406	mcm6 (ENSPFOG00000014294) ##22	xrn1 (ENSPFOG00000013932)	cop1 (ENSPFOG00000013768)	PAPPA2 (ENSPFOG00000013446)	ASTN1 (ENSPFOG00000013059)	brinp2 (ENSPFOG00000012910)
Guppy	MODERN SPECIES	447	ENSPREG00000021620	ENSPREG00000021612	scn12aa (ENSPREG00000021599)	ENSPREG00000021581	COL6A1 (ENSPREG00000021526)	ENSPREG00000021504	COL6A2 (ENSPREG00000021457)	zgc:162816 (ENSPREG00000021431)	ENSPREG00000021418	CFAP410 (ENSPREG00000021401)	zgc:171772 (ENSPREG00000021341)	pecr (ENSPREG00000021301)	ndufb3 (ENSPREG00000021292)	ugt1b7 (ENSPREG00000021283)	ENSPREG00000021266	mcm6 (ENSPREG00000021229) ##22	xrn1 (ENSPREG00000021147)	cop1 (ENSPREG00000021094)	PAPPA2 (ENSPREG00000021060)	ASTN1 (ENSPREG00000021023)
Platyfish	MODERN SPECIES	20	wdr48b (ENSXMAG00000011491)	scn12aa (ENSXMAG00000011587)	ENSXMAG00000024849	ENSXMAG00000028203	ENSXMAG00000029973	COL6A1 (ENSXMAG00000011666)	COL6A2 (ENSXMAG00000011687)	zgc:162816 (ENSXMAG00000011762)	ENSXMAG00000011765	CFAP410 (ENSXMAG00000022437)	zgc:171772 (ENSXMAG00000022077)	pecr (ENSXMAG00000011806)	ndufb3 (ENSXMAG00000000694)	ENSXMAG00000018293	ENSXMAG00000018297	mcm6 (ENSXMAG00000018299) ##22	xrn1 (ENSXMAG00000018320)	cop1 (ENSXMAG00000018345)	PAPPA2 (ENSXMAG00000018380)	ASTN1 (ENSXMAG00000018404)	brinp2 (ENSXMAG00000025244)	ENSXMAG00000022416	ENSXMAG00000022458	klhl20 (ENSXMAG00000018432)	lhx8a (ENSXMAG00000018461)	ENSXMAG00000018469	myh7 (ENSXMAG00000025653)	myh7 (ENSXMAG00000006234)	myh7 (ENSXMAG00000026668)	ENSXMAG00000024786	myh7l (ENSXMAG00000018475)
NAME_4	ANCESTRAL SPECIES	9	ENSGT00920000149157.c	ENSGT00940000176919	ENSGT00940000154992.a.a	ENSGT01100000264009	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00940000168744	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a
Sheepshead minnow	MODERN SPECIES	275	HECTD4 (ENSCVAG00000018059)	ENSCVAG00000018095	ENSCVAG00000018111	ENSCVAG00000018125	vps33a (ENSCVAG00000018167)	ENSCVAG00000018196	bnip3la (ENSCVAG00000018215)	DPYSL2 (ENSCVAG00000018281)	adra1aa (ENSCVAG00000018297)	tmem230b (ENSCVAG00000018313)	ENSCVAG00000018377	pecr (ENSCVAG00000018400)	ENSCVAG00000018409	ENSCVAG00000019909	ENSCVAG00000019982	mcm6 (ENSCVAG00000020032) ##22	ENSCVAG00000020040	tmbim1a (ENSCVAG00000020047)	ENSCVAG00000020051	catip (ENSCVAG00000020064)	ENSCVAG00000020076	ENSCVAG00000020114	ENSCVAG00000020125	ENSCVAG00000020152	PCDH8 (ENSCVAG00000020162)	CNMD (ENSCVAG00000020175)	sugt1 (ENSCVAG00000020199)	ENSCVAG00000020254	EDNRB (ENSCVAG00000020268)	SLC25A30 (ENSCVAG00000020302)	gad1b (ENSCVAG00000020422)
Mummichog	MODERN SPECIES	2251	wdr48b (ENSFHEG00000018394)	ENSFHEG00000018411	scn12aa (ENSFHEG00000018490)	ENSFHEG00000018494	COL6A1 (ENSFHEG00000018553)	COL6A2 (ENSFHEG00000000668)	zgc:162816 (ENSFHEG00000018612)	ENSFHEG00000018622	CFAP410 (ENSFHEG00000018630)	zgc:171772 (ENSFHEG00000018673)	pecr (ENSFHEG00000018684)	ndufb3 (ENSFHEG00000018689)	ENSFHEG00000018697	ENSFHEG00000018702	ENSFHEG00000018739	mcm6 (ENSFHEG00000018803) ##22	ENSFHEG00000018809	tmbim1a (ENSFHEG00000018815)	ENSFHEG00000018828	catip (ENSFHEG00000018836)	ENSFHEG00000018851	ENSFHEG00000018886	PCDH8 (ENSFHEG00000018924)	CNMD (ENSFHEG00000018949)	sugt1 (ENSFHEG00000018988)	ENSFHEG00000019055	EDNRB (ENSFHEG00000019096)	SLC25A30 (ENSFHEG00000019124)	gad1b (ENSFHEG00000019183)	gorasp2 (ENSFHEG00000019197)	tlk1b (ENSFHEG00000019367)
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000008686.c.c	ENSGT00920000149157.c	ENSGT00940000154992.a.a	ENSGT00940000176919	ENSGT01030000234576.D.a.a.b.b	ENSGT00940000162889	ENSGT00940000155682.g.b	ENSGT00390000018786	ENSGT00390000015228	ENSGT00390000018807	ENSGT00390000016988.b	ENSGT00940000156882	ENSGT00390000010316	ENSGT00940000159677.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000166591	ENSGT00940000154101.a	ENSGT00940000164225	ENSGT00390000006290	ENSGT00940000155219.hb.a	ENSGT00480000042679.b.b	ENSGT00390000013700	ENSGT00940000157039.b	ENSGT01100000263512.a.a.a.b.a.b.b	ENSGT00940000158961	ENSGT00940000175414	ENSGT00940000155526.i.b	ENSGT00390000008686.d.a	ENSGT00950000182984.b.a.b.f
Mangrove rivulus	MODERN SPECIES	52												pecr (ENSKMAG00000008743)	ndufb3 (ENSKMAG00000008720)	ENSKMAG00000008704	ENSKMAG00000008680	mcm6 (ENSKMAG00000008608) ##22	tmbim1a (ENSKMAG00000008585)	ENSKMAG00000008563	catip (ENSKMAG00000008547)	ENSKMAG00000008515	ENSKMAG00000008494	PCDH8 (ENSKMAG00000008476)	CNMD (ENSKMAG00000008460)	sugt1 (ENSKMAG00000008427)	ENSKMAG00000008372	ENSKMAG00000008345	EDNRB (ENSKMAG00000008303)	SLC25A30 (ENSKMAG00000008239)	ENSKMAG00000008196	gad1b (ENSKMAG00000008125)	gorasp2 (ENSKMAG00000008063)
Turquoise killifish	MODERN SPECIES	1618	WDR48 (ENSNFUG00015011484)	scn12aa (ENSNFUG00015011887)	ENSNFUG00015012064	Nfu_g_1_020581 (ENSNFUG00015012068)	COL6A1 (ENSNFUG00015012075)	COL6A2 (ENSNFUG00015012096)	ENSNFUG00015012180	zgc:162816 (ENSNFUG00015012190)	ORC2 (ENSNFUG00015012213)	pecr (ENSNFUG00015012245)	zgc:171772 (ENSNFUG00015012259)	C21ORF2 (ENSNFUG00015012264)	ndufb3 (ENSNFUG00015012270)	ENSNFUG00015012284	CXCR4 (ENSNFUG00015012371)	mcm6 (ENSNFUG00015004708) ##22	TMBIM1 (ENSNFUG00015005013)	OLA.3179 (ENSNFUG00015005103)	catip (ENSNFUG00015005115)	ENSNFUG00015005135	ENSNFUG00015005149	ENSNFUG00015005154	ENSNFUG00015005159	PCDH8 (ENSNFUG00015005170)	LECT1 (ENSNFUG00015005176)	sugt1 (ENSNFUG00015005193)	ENSNFUG00015005210	EDNRB1A (ENSNFUG00015005218)	SLC25A30 (ENSNFUG00015005271)	gad1b (ENSNFUG00015005367)	GORASP2 (ENSNFUG00015005549)
Tiger tail seahorse	MODERN SPECIES	110	wdr48b (ENSHCOG00000015401)	scn12aa (ENSHCOG00000015345)	ENSHCOG00000015291	ENSHCOG00000015281	COL6A1 (ENSHCOG00000015262)	ENSHCOG00000014992	COL6A2 (ENSHCOG00000014976)	zgc:162816 (ENSHCOG00000014956)	ENSHCOG00000014912	ENSHCOG00000014904	zgc:171772 (ENSHCOG00000014876)	pecr (ENSHCOG00000014869)	ENSHCOG00000014863	ugt1b7 (ENSHCOG00000014793)	ENSHCOG00000012293	mcm6 (ENSHCOG00000012261) ##22
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	8	ENSMMDG00005022877	zgc:56556 (ENSMMDG00005022879)	gad3 (ENSMMDG00005022881)	ENSMMDG00005022934	RNF152 (ENSMMDG00005022935)	ENSMMDG00005022937	buc (ENSMMDG00005022941)	ENSMMDG00005022948	xkr4 (ENSMMDG00005022957)	tmem68 (ENSMMDG00005022958)	ENSMMDG00005022959	CNTNAP2 (ENSMMDG00005022967)	si:dkey-94e7.2 (ENSMMDG00005022987)	ENSMMDG00005022990	GPR141 (ENSMMDG00005022992)	mcm6l (ENSMMDG00005023013) ##22	exoc3 (ENSMMDG00005023286)	ENSMMDG00005023290	ca8 (ENSMMDG00005023292)	rab2a (ENSMMDG00005010671)	CHD7 (ENSMMDG00005010740)	ENSMMDG00005011755	ttpa (ENSMMDG00005011761)	xpr1b (ENSMMDG00005011829)	ENSMMDG00005011833	tyw3 (ENSMMDG00005011835)	ENSMMDG00005011837	insra (ENSMMDG00005011859)	mfsd14a2 (ENSMMDG00005013508)	ENSMMDG00005013530	loxl5b (ENSMMDG00005013539)
Pinecone sodierfish	MODERN SPECIES	8	wdr48b (ENSMMDG00005015406)	scn12aa (ENSMMDG00005015383)	ENSMMDG00005015379	ENSMMDG00005015376	COL6A1 (ENSMMDG00005015371)	COL6A2 (ENSMMDG00005015369)	zgc:162816 (ENSMMDG00005015366)	ENSMMDG00005015043	CFAP410 (ENSMMDG00005015027)	zgc:171772 (ENSMMDG00005015025)	pecr (ENSMMDG00005015011)	ndufb3 (ENSMMDG00005015005)	ENSMMDG00005013411	ENSMMDG00005012849	ENSMMDG00005012829	mcm6 (ENSMMDG00005012777) ##22	si:ch73-71c20.5 (ENSMMDG00005012769)	tmbim1a (ENSMMDG00005011981)	casp8 (ENSMMDG00005011972)	catip (ENSMMDG00005011969)	ENSMMDG00005011967	ENSMMDG00005011962	ENSMMDG00005011958	PCDH8 (ENSMMDG00005011911)	CNMD (ENSMMDG00005011902)	sugt1 (ENSMMDG00005023380)	ENSMMDG00005023378	EDNRB (ENSMMDG00005023374)	SLC25A30 (ENSMMDG00005023367)	ENSMMDG00005023361	gad1b (ENSMMDG00005023355)
Otomorpha	ANCESTRAL SPECIES	38	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.b	ENSGT01090000260052.a.a.a.a	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086
Clupeiformes	ANCESTRAL SPECIES	254	ENSGT00940000160141	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT01050000244824.D.b ##22	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	14	them6 (ENSDCDG00000013890)	si:ch73-52e5.2 (ENSDCDG00000013895)	ftr67 (ENSDCDG00000013902)	ENSDCDG00000013910	eef1da (ENSDCDG00000013926)	ghrhra (ENSDCDG00000014007)	adcyap1r1a (ENSDCDG00000014351)	FYCO1 (ENSDCDG00000015098)	XCR1 (ENSDCDG00000015117)	ENSDCDG00000015124	ENSDCDG00000015132	ENSDCDG00000015171	viml (ENSDCDG00000015344)	ENSDCDG00000015983	cul1a (ENSDCDG00000016920)	mcm6l (ENSDCDG00000016979) ##22	ENSDCDG00000016981	exoc3 (ENSDCDG00000016986)	ENSDCDG00000017016	si:ch211-106n13.3 (ENSDCDG00000017025)	ccr12a (ENSDCDG00000017028)	HECW1 (ENSDCDG00000017042)	ENSDCDG00000017126	chrng (ENSDCDG00000017130)	ENSDCDG00000017133	eif4e2 (ENSDCDG00000017134)	CAPN10 (ENSDCDG00000017145)	ENSDCDG00000017446	ccl20a.3 (ENSDCDG00000017448)	ENSDCDG00000017450	CAMSAP2 (ENSDCDG00000017458)
Denticle herring	MODERN SPECIES	14	FAM171A1 (ENSDCDG00000034244)	ENSDCDG00000034250	mpc2a (ENSDCDG00000034251)	pop5 (ENSDCDG00000034253)	ENSDCDG00000034256	ccdc106a (ENSDCDG00000034264)	casp20 (ENSDCDG00000034267)	ENSDCDG00000034269	ENSDCDG00000034272	casp20 (ENSDCDG00000034275)	casp8 (ENSDCDG00000034279)	catip (ENSDCDG00000034282)	pnkd (ENSDCDG00000034287)	tmbim1a (ENSDCDG00000034296)	si:ch73-71c20.5 (ENSDCDG00000034301)	mcm6 (ENSDCDG00000034322) ##22	aqp10a (ENSDCDG00000034418)	ENSDCDG00000034419	zgc:123238 (ENSDCDG00000034420)	tuft1a (ENSDCDG00000034421)	ENSDCDG00000034422	SHE (ENSDCDG00000034424)	CHRNB2 (ENSDCDG00000034425)	s100t (ENSDCDG00000034426)	pbxip1b (ENSDCDG00000034429)	lenep (ENSDCDG00000034430)	SHC1 (ENSDCDG00000034436)	flad1 (ENSDCDG00000034470)	ENSDCDG00000034494	ENSDCDG00000034497	efna1b (ENSDCDG00000034499)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000004028	eef1da (ENSCHAG00000004083)	ghrhra (ENSCHAG00000004278)	adcyap1r1a (ENSCHAG00000004677)	FYCO1 (ENSCHAG00000009510)	XCR1 (ENSCHAG00000009561)	ENSCHAG00000009566	ENSCHAG00000009569	XCR1 (ENSCHAG00000009588)	ENSCHAG00000009613	neurod6b (ENSCHAG00000009634)	ENSCHAG00000009694	viml (ENSCHAG00000011253)	ENSCHAG00000011332	cul1a (ENSCHAG00000013820)	mcm6l (ENSCHAG00000014132) ##22	ahrrb (ENSCHAG00000014574)	exoc3 (ENSCHAG00000014821)	ENSCHAG00000014886	si:ch211-106n13.3 (ENSCHAG00000014894)	ENSCHAG00000014904	hecw1b (ENSCHAG00000014942)	STK17A (ENSCHAG00000015965)	COA1 (ENSCHAG00000015981)	blvra (ENSCHAG00000015988)	wdr48b (ENSCHAG00000016003)	ebi3 (ENSCHAG00000016371)	odf3l2a (ENSCHAG00000016378)	crlf1a (ENSCHAG00000016385)	keap1a (ENSCHAG00000016445)	SSBP4 (ENSCHAG00000016455)
Atlantic herring	MODERN SPECIES	7	arl6ip6 (ENSCHAG00000003105)	rprmb (ENSCHAG00000003076)	rprmb (ENSCHAG00000003062)	KCNJ3 (ENSCHAG00000003013)	ino80db (ENSCHAG00000002966)	ndufs1 (ENSCHAG00000002609)	ENSCHAG00000002561	eef1b2 (ENSCHAG00000002376)	ADAM23 (ENSCHAG00000021280)	ENSCHAG00000021268	ENSCHAG00000021255	ENSCHAG00000021216	ENSCHAG00000021206	ENSCHAG00000021090	ENSCHAG00000021038	mcm6 (ENSCHAG00000020929) ##22	si:ch73-71c20.5 (ENSCHAG00000020920)	tmbim1a (ENSCHAG00000020913)	ENSCHAG00000020694	ENSCHAG00000020677	ENSCHAG00000020670	si:ch211-214j24.10 (ENSCHAG00000020664)	ENSCHAG00000020644	ENSCHAG00000020638	ENSCHAG00000020616	ENSCHAG00000020611	ENSCHAG00000020572	MPPED1 (ENSCHAG00000020563)	scube1 (ENSCHAG00000019084)	samm50l (ENSCHAG00000018931)	ALDH1L2 (ENSCHAG00000015295)
Otophysi	ANCESTRAL SPECIES	3	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT01050000244848.C.a.h	ENSGT01050000244824.D.b ##22	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000160050	ENSGT00940000160480.c.b	ENSGT00940000156569.a.b.a	ENSGT00940000165458	ENSGT00390000018047	ENSGT00550000075086
Characiphysae	ANCESTRAL SPECIES	34	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT00940000154774	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000166591	ENSGT00940000164225.y	ENSGT00940000162403	ENSGT00940000158781.f	ENSGT00440000037606.b	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000153514.b.m.b	ENSGT00940000157974.h	ENSGT01080000257365.b.a.a.b.a.y.a	ENSGT00390000010523.c.b.g.b
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	12	ftr67 (ENSIPUG00000007662)	ENSIPUG00000007716	eef1da (ENSIPUG00000007753)	ghrhra (ENSIPUG00000007835)	adcyap1r1a (ENSIPUG00000007953)	Fyco1 (ENSIPUG00000008914)	ENSIPUG00000008970	XCR1 (ENSIPUG00000008990)	ENSIPUG00000008995	neurod6b (ENSIPUG00000008998)	Pde1c (ENSIPUG00000009033)	viml (ENSIPUG00000009115)	ENSIPUG00000009126	cul1a (ENSIPUG00000009214)	ENSIPUG00000009312	mcm6l (ENSIPUG00000009388) ##22	ahrrb (ENSIPUG00000009907)	exoc3 (ENSIPUG00000009925)	zcchc2 (ENSIPUG00000009963)	ENSIPUG00000009977	ENSIPUG00000009984	ENSIPUG00000009999	CCR3 (ENSIPUG00000010027)	hecw1b (ENSIPUG00000010042)	fuz (ENSIPUG00000010150)	gpt (ENSIPUG00000010167)	C1ql3 (ENSIPUG00000010207)	pter (ENSIPUG00000010224)	MMP16 (ENSIPUG00000010263)	egfr (ENSIPUG00000010294)	npc1 (ENSIPUG00000010422)
Channel catfish	MODERN SPECIES	3	orc4 (ENSIPUG00000021451)	acvr2a (ENSIPUG00000021470)	ENSIPUG00000021495	c12h7orf57 (ENSIPUG00000021504)	gpd2 (ENSIPUG00000021509)	nr4a2b (ENSIPUG00000021533)	stk24b (ENSIPUG00000021537)	slc15a1b (ENSIPUG00000021568)	ENSIPUG00000021593	ENSIPUG00000021647	ENSIPUG00000021650	BMPR2 (ENSIPUG00000021655)	FAM117B (ENSIPUG00000021685)	ical1 (ENSIPUG00000021693)	cxcr4-b (ENSIPUG00000021715)	MCM6 (ENSIPUG00000021719) ##22	si:ch73-71c20.5 (ENSIPUG00000021753)	tmbim1 (ENSIPUG00000021760)	sphk1 (ENSIPUG00000021798)	ENSIPUG00000021805	cygb (ENSIPUG00000021812)	kpra (ENSIPUG00000021826)	ENSIPUG00000021888	MGAT5B (ENSIPUG00000021903)	ENSIPUG00000021932	ENSIPUG00000021955	ENSIPUG00000021959	ENSIPUG00000021980	ENSIPUG00000021986	ENSIPUG00000022020	ENSIPUG00000022050
Characiphysae_b	ANCESTRAL SPECIES	50	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT00940000154774	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00940000164225.z	ENSGT00940000166591	ENSGT00940000164225.y	ENSGT00940000162403	ENSGT00940000158781.f	ENSGT00440000037606.b	ENSGT00950000183014.f.a	ENSGT00970000193449	ENSGT00940000153514.b.m.b	ENSGT00940000157974.h	ENSGT01080000257365.b.a.a.b.a.y.a
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	383		LRRC24 (ENSEEEG00000001909)	si:ch73-52e5.2 (ENSEEEG00000001908)	ENSEEEG00000001904	eef1da (ENSEEEG00000001902)	ghrhra (ENSEEEG00000001897)	adcyap1r1a (ENSEEEG00000001832)	ENSEEEG00000001828	ENSEEEG00000001826	ENSEEEG00000001823	neurod6b (ENSEEEG00000001820)	ENSEEEG00000001819	viml (ENSEEEG00000001625)	ENSEEEG00000001617	cul1a (ENSEEEG00000001596)	mcm6l (ENSEEEG00000001583) ##22	ahrrb (ENSEEEG00000001559)	exoc3 (ENSEEEG00000001541)	si:ch211-106n13.3 (ENSEEEG00000001535)	ccr12a (ENSEEEG00000001531)	hecw1b (ENSEEEG00000001528)	ENSEEEG00000001525
Electric eel	MODERN SPECIES	307			ENSEEEG00000000169	si:dkey-276j7.1 (ENSEEEG00000000105)	ENSEEEG00000000090	ENSEEEG00000022778	gpd2 (ENSEEEG00000022777)	nr4a2b (ENSEEEG00000022775)	stk24b (ENSEEEG00000022768)	slc15a1b (ENSEEEG00000022555)	ENSEEEG00000022496	bmpr2a (ENSEEEG00000022484)	ENSEEEG00000022481	ical1 (ENSEEEG00000022479)	cxcr4a (ENSEEEG00000022477)	mcm6 (ENSEEEG00000022465) ##22	si:ch73-71c20.5 (ENSEEEG00000022461)	tmbim1a (ENSEEEG00000022460)	pnkd (ENSEEEG00000022459)	catip (ENSEEEG00000022457)	GPR180 (ENSEEEG00000022456)	TGDS (ENSEEEG00000022451)	ENSEEEG00000022448	ENSEEEG00000022446	ENSEEEG00000022445	ENSEEEG00000022444	ENSEEEG00000022443	ENSEEEG00000022442	ENSEEEG00000022441	slain1b (ENSEEEG00000022440)	FBXL3 (ENSEEEG00000022438)
Characoidei	ANCESTRAL SPECIES	58	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT01050000244848.C.b	ENSGT01050000244824.D.b ##22	ENSGT00940000154486.a.b.a.a	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01010000223449	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b.f	ENSGT00390000010727	ENSGT00940000155265.a.g	ENSGT00940000155969.z	ENSGT00390000006960	ENSGT00940000157532.b	ENSGT00940000155450.c	ENSGT00940000156182	ENSGT00400000022086.a
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	8	ENSAMXG00000040183	eef1da (ENSAMXG00000043611)	ghrhra (ENSAMXG00000043516)	adcyap1r1a (ENSAMXG00000035903)	FYCO1 (ENSAMXG00000002969)	XCR1 (ENSAMXG00000026490)	ENSAMXG00000039747	ENSAMXG00000026491	neurod6b (ENSAMXG00000026500)	ENSAMXG00000033952	PDE1C (ENSAMXG00000041175)	viml (ENSAMXG00000036556)	ENSAMXG00000042650	cul1a (ENSAMXG00000033832)	ENSAMXG00000038784	mcm6l (ENSAMXG00000036466) ##22	ahrrb (ENSAMXG00000034659)	exoc3 (ENSAMXG00000009782)	ENSAMXG00000041767	si:ch211-106n13.3 (ENSAMXG00000042931)	ccr12a (ENSAMXG00000026036)	hecw1b (ENSAMXG00000035827)	ENSAMXG00000012553	gpt (ENSAMXG00000038056)	ENSAMXG00000041045	pter (ENSAMXG00000012893)	MMP16 (ENSAMXG00000036120)	egfra (ENSAMXG00000012474)	npc1 (ENSAMXG00000012420)	cables1 (ENSAMXG00000012400)	gata6 (ENSAMXG00000012389)
Mexicana tetra	MODERN SPECIES	4	ENSAMXG00000034094	si:dkey-276j7.1 (ENSAMXG00000031861)	ENSAMXG00000004540	gpd2 (ENSAMXG00000004533)	nr4a2b (ENSAMXG00000004517)	stk24b (ENSAMXG00000004494)	slc15a1b (ENSAMXG00000004462)	ENSAMXG00000015945	ENSAMXG00000036263	bmpr2a (ENSAMXG00000015904)	ENSAMXG00000015878	ical1 (ENSAMXG00000015858)	ENSAMXG00000038142	ENSAMXG00000004610	ENSAMXG00000015818	mcm6 (ENSAMXG00000015786) ##22	ENSAMXG00000041875	tmbim1a (ENSAMXG00000029201)	pnkd (ENSAMXG00000043305)	catip (ENSAMXG00000015679)	casp8 (ENSAMXG00000015634)	casp20 (ENSAMXG00000015579)	casp20 (ENSAMXG00000029860)	dytn (ENSAMXG00000015497)	ADAM23 (ENSAMXG00000015410)	ENSAMXG00000034650	eef1b2 (ENSAMXG00000030818)	ENSAMXG00000030270	ndufs1 (ENSAMXG00000015335)	ino80db (ENSAMXG00000038619)	KCNJ3 (ENSAMXG00000015315)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	129				ghrhra (ENSPNAG00000002518)	adcyap1r1a (ENSPNAG00000012984)	FYCO1 (ENSPNAG00000012936)	ENSPNAG00000012862	XCR1 (ENSPNAG00000012834)	ENSPNAG00000012828	ENSPNAG00000012821	neurod6b (ENSPNAG00000002415)	ENSPNAG00000002407	viml (ENSPNAG00000005783)	ENSPNAG00000012719	cul1a (ENSPNAG00000002328)	mcm6l (ENSPNAG00000012562) ##22	ahrrb (ENSPNAG00000002270)	exoc3 (ENSPNAG00000012484)	ENSPNAG00000012445	si:ch211-106n13.3 (ENSPNAG00000012413)	ENSPNAG00000012392	ccr12a (ENSPNAG00000012372)	hecw1b (ENSPNAG00000002216)	ENSPNAG00000002175	ENSPNAG00000002174	PTPRS (ENSPNAG00000012230)	FEM1A (ENSPNAG00000012160)	ENSPNAG00000012153	ENSPNAG00000002100	ENSPNAG00000012093	ENSPNAG00000005871
Red-bellied piranha	MODERN SPECIES	554																mcm6 (ENSPNAG00000005188) ##22	si:ch73-71c20.5 (ENSPNAG00000021997)	tmbim1a (ENSPNAG00000021988)	KCNJ3 (ENSPNAG00000021945)	rprmb (ENSPNAG00000021923)	arl6ip6 (ENSPNAG00000021916)	ENSPNAG00000021870	MYLK (ENSPNAG00000021621)	gmppab (ENSPNAG00000021583)	ENSPNAG00000021520	ENSPNAG00000021498
Cyprinoidei	DUPLICATION
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	69	ENSGT00390000004859.d	ENSGT00390000004859.c	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f	ENSGT00950000183014.f.b.b.a.b.b	ENSGT00940000167394	ENSGT00940000157362.c	ENSGT00940000154044.a.a.q.b	ENSGT01090000260052.a.b.i	ENSGT01090000260052.a.a.a.a	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e	ENSGT00940000155331.A.f	ENSGT00940000156146.`b.b	ENSGT00940000154516.a.a	ENSGT01050000244824.D.b.hb.a ##22	ENSGT00940000154486.a.b.a.a.c	ENSGT01030000234613.a.a	ENSGT00520000055637.B	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a	ENSGT00940000158294.g.b	ENSGT00440000033985	ENSGT00390000011072	ENSGT00920000149157.c	ENSGT00940000163472.i.a.b.b.b	ENSGT01030000234540.A.a.a.x	ENSGT00980000198744	ENSGT01030000234540.A.a.a.w.b	ENSGT00950000183102.B	ENSGT00940000165656
Cyprininae	ANCESTRAL SPECIES	63	ENSGT00390000004859.d.a	ENSGT00390000004859.c.g	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.b	ENSGT00950000183014.f.b.b.a.b.b.b	ENSGT00940000157362.c.a	ENSGT00940000154044.a.a.q.b.a	ENSGT01090000260052.a.b.i.b	ENSGT01090000260052.a.a.a.a.z	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e.a	ENSGT00940000155331.A.f.b	ENSGT00940000156146.`b.b.b	ENSGT00940000154516.a.a.k	ENSGT00940000154774.y.a	ENSGT01050000244824.D.b.hb.a ##22	ENSGT00940000154486.a.b.a.a.c.a	ENSGT01030000234613.a.a.j	ENSGT00520000055637.B.n	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a.j	ENSGT00940000158294.g.b.c.a	ENSGT00440000033985	ENSGT00390000011072.f	ENSGT00920000149157.c.f	ENSGT00940000163472.i.a.b.b.b.a.a	ENSGT01030000234540.A.a.a.x.a.b.a	ENSGT00940000163472.i.a.b.b.b.b	ENSGT01030000234540.A.a.a.x.a.b.b.a	ENSGT00950000183102.B.b	ENSGT00940000165656.c
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	eeig2a (ENSCARG00000005251)	ITGB1 (ENSCARG00000004916)	epc1b (ENSCARG00000004146)	ENSCARG00000004025	ENSCARG00000003986	mterf4 (ENSCARG00000003964)	ENSCARG00000003949	ENSCARG00000003934	ENSCARG00000003915	ENSCARG00000040810	neurod6b (ENSCARG00000040789)	ENSCARG00000038669	viml (ENSCARG00000037820)	ENSCARG00000032706	cul1a (ENSCARG00000032297)	mcm6l (ENSCARG00000031976) ##22	ahrrb (ENSCARG00000031951)	exoc3 (ENSCARG00000031832)	ENSCARG00000031822	ccr12a (ENSCARG00000031809)	ccr12a (ENSCARG00000031803)	hecw1b (ENSCARG00000031311)	ENSCARG00000031283	blvra (ENSCARG00000031269)	wdr48b (ENSCARG00000031133)	ENSCARG00000031057	cactin (ENSCARG00000031000)	sema4e (ENSCARG00000030539)	stap2a (ENSCARG00000030503)	sh3gl1a (ENSCARG00000030436)	rorcb (ENSCARG00000030404)
Goldfish	MODERN SPECIES	2866						FYCO1 (ENSCARG00000060421)	XCR1 (ENSCARG00000060416)	XCR1 (ENSCARG00000060394)	XCR1 (ENSCARG00000060383)	ENSCARG00000060376	neurod6b (ENSCARG00000060363)	ENSCARG00000056392	viml (ENSCARG00000055946)	ENSCARG00000050855	cul1a (ENSCARG00000050398)	mcm6l (ENSCARG00000049664) ##22	ENSCARG00000049585
Cyprininae_a	ANCESTRAL SPECIES	168	ENSGT00390000004859.d.a	ENSGT00390000004859.c.g	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.b	ENSGT00950000183014.f.b.b.a.b.b.b	ENSGT00940000157362.c.a	ENSGT00940000154044.a.a.q.b.a	ENSGT01090000260052.a.b.i.b	ENSGT01090000260052.a.a.a.a.z	ENSGT01090000260052.a.a.b	ENSGT00940000159827.e.a	ENSGT00940000155331.A.f.b	ENSGT00940000156146.`b.b.b	ENSGT00940000154516.a.a.k	ENSGT00940000154774.y.a	ENSGT01050000244824.D.b.hb.a ##22	ENSGT00940000154486.a.b.a.a.c.a	ENSGT01030000234613.a.a.j	ENSGT00520000055637.B.n	ENSGT01090000260052.b.b.a.j	ENSGT00940000158294.g.b.c.a	ENSGT00390000011072.f	ENSGT00920000149157.c.f	ENSGT00940000163472.i.a.b.b.b.a.a	ENSGT00940000163472.i.a.b.b.b.b	ENSGT01030000234540.A.a.a.x.a.b.b.a	ENSGT00950000183102.B.b	ENSGT00940000165656.c	ENSGT00530000063841.b.b.a	ENSGT00940000154737.c.g.b	ENSGT00940000164939.a.b.a
Common carp reference	MODERN SPECIES	29	them6 (ENSCCRG00000001933)	si:ch73-52e5.2 (ENSCCRG00000062659)	ftr67 (ENSCCRG00000001892)	eef1da (ENSCCRG00000001965)	ghrhra (ENSCCRG00000001953)	adcyap1r1a (ENSCCRG00000000914)	ENSCCRG00000043381	ENSCCRG00000057595	ENSCCRG00000043397	ENSCCRG00000063787	neurod6b (ENSCCRG00000053577)	ENSCCRG00000023208	viml (ENSCCRG00000023191)	ENSCCRG00000046961	cul1a (ENSCCRG00000040809)	mcm6l (ENSCCRG00000069854) ##22	ahrrb (ENSCCRG00000040791)	exoc3 (ENSCCRG00000040748)	ENSCCRG00000040737	ENSCCRG00000074625	ENSCCRG00000040731	ccr12a (ENSCCRG00000078431)	hecw1b (ENSCCRG00000001978)	ENSCCRG00000040449	COA1 (ENSCCRG00000056917)	blvra (ENSCCRG00000067864)	cactin (ENSCCRG00000051529)	ENSCCRG00000029446	ENSCCRG00000045155	sema4e (ENSCCRG00000061460)	stap2a (ENSCCRG00000051231)
Golden-line barbel	MODERN SPECIES	262	LRRC24 (ENSSGRG00000000229)	them6 (ENSSGRG00000000235)	si:ch73-52e5.2 (ENSSGRG00000000240)	eef1da (ENSSGRG00000000267)	adcyap1r1a (ENSSGRG00000000330)	ENSSGRG00000000428	XCR1 (ENSSGRG00000000433)	ENSSGRG00000000434	ENSSGRG00000000435	ENSSGRG00000000436	neurod6b (ENSSGRG00000000437)	ENSSGRG00000000524	viml (ENSSGRG00000005253)	ENSSGRG00000005336	cul1a (ENSSGRG00000009171)	mcm6l (ENSSGRG00000010190) ##22	ahrrb (ENSSGRG00000010191)	exoc3 (ENSSGRG00000010193)	si:ch211-106n13.3 (ENSSGRG00000010200)	ccr12a (ENSSGRG00000010201)	ENSSGRG00000010204	ENSSGRG00000010206	blvra (ENSSGRG00000010208)	wdr48b (ENSSGRG00000010210)	ENSSGRG00000010427	ENSSGRG00000010428	cactin (ENSSGRG00000010431)	sema4e (ENSSGRG00000010434)	stap2a (ENSSGRG00000010455)	stap2a (ENSSGRG00000010457)	sh3gl1a (ENSSGRG00000010465)
Zebrafish	MODERN SPECIES	11	THEM6 (ENSDARG00000103914)	ftr67 (ENSDARG00000098820)	ENSDARG00000102557	eef1da (ENSDARG00000102291)	ENSDARG00000102151	ghrhra (ENSDARG00000104961)	adcyap1r1a (ENSDARG00000105201)	FYCO1 (ENSDARG00000078022)	XCR1 (ENSDARG00000052988)	ENSDARG00000058774	neurod6b (ENSDARG00000020794)	PDE1C (ENSDARG00000090398)	viml (ENSDARG00000044501)	cntnap2b (ENSDARG00000074558)	cul1a (ENSDARG00000019239)	mcm6l (ENSDARG00000033231) ##22	ahrrb (ENSDARG00000052618)	exoc3 (ENSDARG00000014582)	ENSDARG00000067950	si:ch211-106n13.3 (ENSDARG00000052633)	ccr12a (ENSDARG00000038541)	hecw1b (ENSDARG00000004291)	COA1 (ENSDARG00000076360)	blvra (ENSDARG00000059857)	wdr48b (ENSDARG00000038543)	ENSDARG00000095756	ENSDARG00000110173	ENSDARG00000099948	ENSDARG00000077309	cactin (ENSDARG00000059866)	sema4e (ENSDARG00000052997)
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT01050000244824.D.b.hb.b ##22
Cyprininae	ANCESTRAL SPECIES	142	ENSGT00390000004859.d.b	ENSGT00390000004859.c.h	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.a	ENSGT00950000183014.f.b.b.a.b.b.a	ENSGT00940000167394	ENSGT00940000157362.c.b	ENSGT00940000154044.a.a.q.b.b	ENSGT01090000260052.a.b.i.a	ENSGT01090000260052.a.a.a.a.y	ENSGT00940000159827.e.b	ENSGT00940000155331.A.f.a	ENSGT00940000156146.`b.b.a	ENSGT00940000154516.a.a.l	ENSGT00940000154774.y.b	ENSGT01050000244824.D.b.hb.b ##22
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00390000004859.c.h	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.b.f.a.a	ENSGT00950000183014.f.b.b.a.b.b.a	ENSGT00940000167394	ENSGT00940000157362.c.b	ENSGT00940000154044.a.a.q.b.b	ENSGT01090000260052.a.b.i.a	ENSGT01090000260052.a.a.a.a.y	ENSGT00940000159827.e.b	ENSGT00940000155331.A.f.a	ENSGT00940000156146.`b.b.a	ENSGT00940000154516.a.a.l	ENSGT00940000154774.y.b	ENSGT01050000244824.D.b.hb.b ##22	ENSGT00940000154486.a.b.a.a.c.b	ENSGT01030000234613.a.a.i	ENSGT00520000055637.B.m	ENSGT00940000153769.B	ENSGT01090000260052.b.b.a.i	ENSGT00940000158294.g.b.c.b	ENSGT00440000033985	ENSGT00390000011072.e	ENSGT00920000149157.c.e	ENSGT00950000183102.B.a	ENSGT00940000165656.d	ENSGT00530000063841.b.b.b	ENSGT00940000154737.c.g.a	ENSGT00940000164939.a.b.b	ENSGT01040000240444.A.b.a.b.j.a
Golden-line barbel	MODERN SPECIES	279	ENSSGRG00000051031	eef1da (ENSSGRG00000051035)	ghrhra (ENSSGRG00000051038)	adcyap1r1a (ENSSGRG00000051042)	FYCO1 (ENSSGRG00000051111)	XCR1 (ENSSGRG00000051115)	XCR1 (ENSSGRG00000051116)	XCR1 (ENSSGRG00000051117)	ENSSGRG00000051118	ENSSGRG00000051119	neurod6b (ENSSGRG00000051120)	ENSSGRG00000051122	viml (ENSSGRG00000051127)	ENSSGRG00000051161	cul1a (ENSSGRG00000051456)	ENSSGRG00000051999 ##22	ahrrb (ENSSGRG00000052000)	exoc3 (ENSSGRG00000052001)	ENSSGRG00000052003	si:ch211-106n13.3 (ENSSGRG00000052004)	ccr12a (ENSSGRG00000052006)	hecw1b (ENSSGRG00000052007)	COA1 (ENSSGRG00000052031)	blvra (ENSSGRG00000052032)	wdr48b (ENSSGRG00000052036)	ENSSGRG00000052059	ENSSGRG00000052061	ENSSGRG00000052062	cactin (ENSSGRG00000052063)	stap2a (ENSSGRG00000052067)	sh3gl1a (ENSSGRG00000052068)
Cyprinoidei	ANCESTRAL SPECIES	51	ENSGT00940000157230.b	ENSGT00940000155655.A	ENSGT00940000155773.a	ENSGT00390000014376.c.b	ENSGT00980000202863	ENSGT00390000001718.b	ENSGT00950000183038.a.b.b.b.r	ENSGT00940000157904.a.a	ENSGT00940000153476.b.o.b	ENSGT00940000155995.e.a	ENSGT00940000155972.A	ENSGT00940000156449.b.a	ENSGT00950000183046.a.a.gb	ENSGT00390000005530.a.a	ENSGT01050000244848.C.a.h	ENSGT01050000244824.D.b.ib ##22	ENSGT00530000065055	ENSGT01050000244890.a.b.a.i.a	ENSGT00940000158887	ENSGT00940000154101.a	ENSGT00970000193449	ENSGT00940000166591	ENSGT00940000164225	ENSGT00940000162403	ENSGT00940000158781.f	ENSGT00950000183014.f.a	ENSGT00940000153514.b.m.b	ENSGT00940000157974.h	ENSGT01080000257365.b.a.a.b.a.y.a	ENSGT00390000010523.c.b.g.b	ENSGT00390000009987
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	20	ENSGT00940000155359.w.b.eb	ENSGT00940000157230.b.e	ENSGT00940000155655.A.h	ENSGT00940000155773.a.c	ENSGT00390000014376.c.b.b	ENSGT00980000202863.a	ENSGT00390000001718.b.d	ENSGT00950000183038.a.b.b.b.r.b	ENSGT00940000153476.b.o.b.j	ENSGT00940000155995.e.a.b	ENSGT00940000155972.A.i	ENSGT00940000156449.b.a.g	ENSGT00950000183046.a.a.gb.e	ENSGT00390000005530.a.a.n	ENSGT01050000244848.C.a.h.c	ENSGT01050000244824.D.b.ib.a ##22	ENSGT00530000065055.e	ENSGT01050000244890.a.b.a.i.a.b	ENSGT00940000158887.c	ENSGT00940000154101.a.b	ENSGT00940000166591.c	ENSGT00940000164225.ab.b.a	ENSGT00940000162403.b	ENSGT00940000158781.f.b	ENSGT00970000193449	ENSGT00950000183014.f.a.bb	ENSGT00940000153514.b.m.b.a	ENSGT00940000157974.h.b	ENSGT01080000257365.b.a.a.b.a.y.a.b	ENSGT00390000010523.c.b.g.b.b	ENSGT00940000155515.a.a.b
Goldfish	MODERN SPECIES	24	ENSCARG00000029455	wdsub1 (ENSCARG00000029251)	ENSCARG00000026825	ENSCARG00000023732	si:dkey-276j7.1 (ENSCARG00000023596)	ENSCARG00000023589	gpd2 (ENSCARG00000023414)	nr4a2b (ENSCARG00000023363)	stk24b (ENSCARG00000022990)	slc15a1b (ENSCARG00000022333)	ENSCARG00000021667	bmpr2a (ENSCARG00000020801)	FAM117B (ENSCARG00000020761)	ical1 (ENSCARG00000020718)	cxcr4a (ENSCARG00000020702)	mcm6 (ENSCARG00000020347) ##22	si:ch73-71c20.5 (ENSCARG00000020329)	tmbim1a (ENSCARG00000020309)	pnkd (ENSCARG00000020048)	casp8 (ENSCARG00000020017)	casp20 (ENSCARG00000020011)	ADAM23 (ENSCARG00000019471)	ENSCARG00000019432	eef1b2 (ENSCARG00000019419)	ndufs1 (ENSCARG00000018650)	ino80db (ENSCARG00000018599)	KCNJ3 (ENSCARG00000018583)	rprmb (ENSCARG00000018580)	ENSCARG00000018553	ENSCARG00000017989	ENSCARG00000017882
Cyprininae_a	ANCESTRAL SPECIES	13	ENSGT00940000155359.w.b.eb	ENSGT00940000157230.b.e	ENSGT00940000155655.A.h	ENSGT00940000155773.a.c	ENSGT00390000014376.c.b.b	ENSGT00980000202863.a	ENSGT00390000001718.b.d	ENSGT00950000183038.a.b.b.b.r.b	ENSGT00940000153476.b.o.b.j	ENSGT00940000155995.e.a.b	ENSGT00940000155972.A.i	ENSGT00940000156449.b.a.g	ENSGT00950000183046.a.a.gb.e	ENSGT00390000005530.a.a.n	ENSGT01050000244848.C.a.h.c	ENSGT01050000244824.D.b.ib.a ##22	ENSGT00530000065055.e	ENSGT01050000244890.a.b.a.i.a.b	ENSGT00940000158887.c	ENSGT00940000154101.a.b	ENSGT00940000166591.c	ENSGT00940000164225.ab.b.a	ENSGT00940000162403.b	ENSGT00940000158781.f.b	ENSGT00970000193449	ENSGT00950000183014.f.a.bb	ENSGT00940000153514.b.m.b.a	ENSGT00940000157974.h.b	ENSGT01080000257365.b.a.a.b.a.y.a.b	ENSGT00390000010523.c.b.g.b.b	ENSGT00940000155515.a.a.b
Common carp reference	MODERN SPECIES	16	ENSCCRG00000026304	wdsub1 (ENSCCRG00000025177)	ENSCCRG00000045512	ENSCCRG00000025758	si:dkey-276j7.1 (ENSCCRG00000025745)	ENSCCRG00000060862	gpd2 (ENSCCRG00000079452)	nr4a2b (ENSCCRG00000020982)	stk24b (ENSCCRG00000066300)	slc15a1b (ENSCCRG00000052633)	ENSCCRG00000052617	bmpr2a (ENSCCRG00000037215)	ENSCCRG00000037179	ical1 (ENSCCRG00000037124)	cxcr4a (ENSCCRG00000054142)	mcm6 (ENSCCRG00000038238) ##22	si:ch73-71c20.5 (ENSCCRG00000038228)	tmbim1a (ENSCCRG00000038219)	pnkd (ENSCCRG00000047996)	catip (ENSCCRG00000022255)	casp8 (ENSCCRG00000022248)	casp20 (ENSCCRG00000008807)	dytn (ENSCCRG00000022242)	ADAM23 (ENSCCRG00000021237)	ndufs1 (ENSCCRG00000059554)	eef1b2 (ENSCCRG00000002495)	ino80db (ENSCCRG00000002484)	ENSCCRG00000060682	rprmb (ENSCCRG00000030067)	ENSCCRG00000037061	ENSCCRG00000026180
Golden-line barbel	MODERN SPECIES	62	zswim2 (ENSSGRG00000026614)	FAM171B (ENSSGRG00000026611)	MARCHF7 (ENSSGRG00000026608)	ENSSGRG00000026512	wdsub1 (ENSSGRG00000026505)	ENSSGRG00000025918	ENSSGRG00000025896	ENSSGRG00000025891	gpd2 (ENSSGRG00000025685)	nr4a2b (ENSSGRG00000025677)	stk24b (ENSSGRG00000025642)	ENSSGRG00000017986	bmpr2a (ENSSGRG00000017865)	FAM117B (ENSSGRG00000017863)	cxcr4a (ENSSGRG00000017860)	mcm6 (ENSSGRG00000017838) ##22	si:ch73-71c20.5 (ENSSGRG00000017837)	tmbim1a (ENSSGRG00000017836)	pnkd (ENSSGRG00000017690)	catip (ENSSGRG00000017688)	ENSSGRG00000017687
Cyprininae	ANCESTRAL SPECIES	23	ENSGT00940000157230.b.f	ENSGT00940000155655.A.g	ENSGT00940000155773.a.d	ENSGT00390000014376.c.b.a	ENSGT00980000202863.b	ENSGT00390000001718.b.c	ENSGT00950000183038.a.b.b.b.r.a	ENSGT00940000157904.a.a	ENSGT00940000153476.b.o.b.i	ENSGT00940000155995.e.a.a	ENSGT00940000155972.A.j	ENSGT00940000156449.b.a.h	ENSGT00950000183046.a.a.gb.f	ENSGT00390000005530.a.a.m	ENSGT01050000244848.C.a.h.d	ENSGT01050000244824.D.b.ib.b ##22	ENSGT00530000065055.f	ENSGT01050000244890.a.b.a.i.a.a	ENSGT00940000158887.d	ENSGT00940000154101.a.a	ENSGT00940000166591.d	ENSGT00940000164225.ab.a.b	ENSGT00940000164225.ab.b.b	ENSGT00940000162403.a	ENSGT00940000158781.f.a	ENSGT00950000183014.f.a.cb	ENSGT00940000153514.b.m.b.b	ENSGT00940000157974.h.a	ENSGT01080000257365.b.a.a.b.a.y.a.a	ENSGT00390000010523.c.b.g.b.a	ENSGT00390000009987
Cyprininae_a	ANCESTRAL SPECIES	30	ENSGT00940000157230.b.f	ENSGT00940000155655.A.g	ENSGT00940000155773.a.d	ENSGT00390000014376.c.b.a	ENSGT00980000202863.b	ENSGT00390000001718.b.c	ENSGT00950000183038.a.b.b.b.r.a	ENSGT00940000157904.a.a	ENSGT00940000153476.b.o.b.i	ENSGT00940000155995.e.a.a	ENSGT00940000155972.A.j	ENSGT00940000156449.b.a.h	ENSGT00950000183046.a.a.gb.f	ENSGT00390000005530.a.a.m	ENSGT01050000244848.C.a.h.d	ENSGT01050000244824.D.b.ib.b ##22	ENSGT01050000244890.a.b.a.i.a.a	ENSGT00940000158887.d	ENSGT00940000154101.a.a	ENSGT00940000166591.d	ENSGT00940000164225.ab.a.b	ENSGT00940000164225.ab.b.b	ENSGT00940000162403.a	ENSGT00940000158781.f.a	ENSGT00950000183014.f.a.cb	ENSGT00940000153514.b.m.b.b	ENSGT00940000157974.h.a	ENSGT01080000257365.b.a.a.b.a.y.a.a	ENSGT00390000010523.c.b.g.b.a	ENSGT00390000009987	ENSGT00940000155515.a.a.a
Common carp reference	MODERN SPECIES	10	ENSCCRG00000064084	wdsub1 (ENSCCRG00000030234)	ENSCCRG00000017075	ENSCCRG00000030398	si:dkey-276j7.1 (ENSCCRG00000030409)	ENSCCRG00000030414	gpd2 (ENSCCRG00000073527)	nr4a2b (ENSCCRG00000000447)	stk24b (ENSCCRG00000052670)	slc15a1b (ENSCCRG00000039269)	ENSCCRG00000033291	bmpr2a (ENSCCRG00000024160)	ENSCCRG00000024236	ical1 (ENSCCRG00000024243)	cxcr4a (ENSCCRG00000047765)	mcm6 (ENSCCRG00000047778) ##22	tmbim1a (ENSCCRG00000047987)	pnkd (ENSCCRG00000067782)	catip (ENSCCRG00000048030)	casp8 (ENSCCRG00000030596)	ENSCCRG00000073135	casp20 (ENSCCRG00000060659)	dytn (ENSCCRG00000008801)	ENSCCRG00000002526	ENSCCRG00000002514	ndufs1 (ENSCCRG00000002488)	ino80db (ENSCCRG00000030058)	KCNJ3 (ENSCCRG00000030065)	rprmb (ENSCCRG00000078403)	arl6ip6 (ENSCCRG00000033889)	ENSCCRG00000026324
Golden-line barbel	MODERN SPECIES	533	wdsub1 (ENSSGRG00000006284)	ENSSGRG00000006339	ENSSGRG00000007443	si:dkey-276j7.1 (ENSSGRG00000007783)	nr0b2a (ENSSGRG00000007788)	ENSSGRG00000007789	nr4a2b (ENSSGRG00000007790)	ENSSGRG00000007793	stk24b (ENSSGRG00000007794)	slc15a1b (ENSSGRG00000007797)	ENSSGRG00000008080	bmpr2a (ENSSGRG00000017060)	FAM117B (ENSSGRG00000017446)	ical1 (ENSSGRG00000017451)	cxcr4a (ENSSGRG00000017488)	mcm6 (ENSSGRG00000017490) ##22	tmbim1a (ENSSGRG00000017497)	pnkd (ENSSGRG00000017502)	catip (ENSSGRG00000017540)	casp8 (ENSSGRG00000017542)	ENSSGRG00000017544	ENSSGRG00000017552	ENSSGRG00000017558	ndufs1 (ENSSGRG00000017685)	eef1b2 (ENSSGRG00000017768)	ino80db (ENSSGRG00000017786)	KCNJ3 (ENSSGRG00000017787)	ENSSGRG00000017788	MYLK (ENSSGRG00000017808)	gmppab (ENSSGRG00000017877)	ENSSGRG00000018064
Goldfish	MODERN SPECIES	46	ENSCARG00000017322	wdsub1 (ENSCARG00000021539)	ENSCARG00000021653	ENSCARG00000024557	si:dkey-276j7.1 (ENSCARG00000025541)	ENSCARG00000025556	gpd2 (ENSCARG00000025582)	nr4a2b (ENSCARG00000025854)	stk24b (ENSCARG00000025872)	slc15a1b (ENSCARG00000026016)	ENSCARG00000027664	bmpr2a (ENSCARG00000046009)	FAM117B (ENSCARG00000049305)	ical1 (ENSCARG00000049350)	cxcr4a (ENSCARG00000049560)	mcm6 (ENSCARG00000049591) ##22	si:ch73-71c20.5 (ENSCARG00000049704)	tmbim1a (ENSCARG00000049719)	pnkd (ENSCARG00000049840)	catip (ENSCARG00000050563)	ENSCARG00000050610	casp20 (ENSCARG00000050664)	dytn (ENSCARG00000050683)	ADAM23 (ENSCARG00000050746)	eef1b2 (ENSCARG00000051338)	ndufs1 (ENSCARG00000051504)	ino80db (ENSCARG00000052358)	KCNJ3 (ENSCARG00000019769)	rprmb (ENSCARG00000019778)	arl6ip6 (ENSCARG00000019784)	ENSCARG00000019966
Zebrafish	MODERN SPECIES	21	wdsub1 (ENSDARG00000090418)	ENSDARG00000077073	ENSDARG00000045331	si:dkey-276j7.1 (ENSDARG00000090872)	ENSDARG00000097743	ENSDARG00000097317	gpd2 (ENSDARG00000062430)	nr4a2b (ENSDARG00000044532)	stk24b (ENSDARG00000023878)	slc15a1b (ENSDARG00000044528)	ENSDARG00000016311	bmpr2a (ENSDARG00000011941)	FAM117B (ENSDARG00000074921)	ical1 (ENSDARG00000057688)	cxcr4a (ENSDARG00000057633)	mcm6 (ENSDARG00000057683) ##22	si:ch73-71c20.5 (ENSDARG00000097696)	tmbim1a (ENSDARG00000058323)	pnkd (ENSDARG00000071032)	catip (ENSDARG00000063009)	casp8 (ENSDARG00000058325)	L3HYPDH (ENSDARG00000103763)	casp20 (ENSDARG00000104367)	dytn (ENSDARG00000071025)	ADAM23 (ENSDARG00000062323)	eef1b2 (ENSDARG00000044521)	ENSDARG00000111107	ndufs1 (ENSDARG00000028546)	ino80db (ENSDARG00000062226)	KCNJ3 (ENSDARG00000062217)	rprmb (ENSDARG00000024006)
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT01050000244824.D ##22
Caenorhabditis elegans	MODERN SPECIES	2	cdk-1 (WBGene00000405)	T05G5.4 (WBGene00011499)	T05G5.5 (WBGene00011500)	ech-6 (WBGene00001155)	vps-53 (WBGene00011502)	gcc-2 (WBGene00011503)	rmd-1 (WBGene00011501)	cbp-1 (WBGene00000366)	usp-46 (WBGene00011216)	sqv-3 (WBGene00005021)	vha-1 (WBGene00006910)	vha-2 (WBGene00006911)	R10E11.6 (WBGene00011218)	R10E11.5 (WBGene00011217)	R10E11.9 (WBGene00011220)	mcm-6 (WBGene00003158) ##22	srxa-10 (WBGene00011219)	ZK632.2 (WBGene00014011)	riok-3 (WBGene00014012)	ZK632.4 (WBGene00014013)	gtap-2 (WBGene00014014)	ZK632.14 (WBGene00014020)	cnx-1 (WBGene00000567)	panl-3 (WBGene00014015)	arl-5 (WBGene00000189)	lin-52 (WBGene00003035)	ZK632.9 (WBGene00014016)	ZK632.10 (WBGene00014017)	ZK632.11 (WBGene00014018)	ZK632.12 (WBGene00014019)	K11H3.8 (WBGene00185002)
Fruitfly	MODERN SPECIES	26	CG3342 (FBgn0029874)	Agxt (FBgn0014031)	RpL7A (FBgn0014026)	dx (FBgn0000524)	CG34417 (FBgn0085446)	CG17717 (FBgn0029877)	Pat1 (FBgn0029878)	APC7 (FBgn0029879)	pigs (FBgn0029881)	CG14443 (FBgn0029880)	CG3226 (FBgn0029882)	Cdc7 (FBgn0028360)	CG3224 (FBgn0029885)	Ctr1A (FBgn0062413)	CG3198 (FBgn0029887)	Mcm6 (FBgn0025815) ##22	ND-ASHI (FBgn0029888)	Fum1 (FBgn0286222)	Fum2 (FBgn0029890)	Pink1 (FBgn0029891)	CG44303 (FBgn0265362)	CG3184 (FBgn0029892)	CG14442 (FBgn0029893)	CG14440 (FBgn0029894)	CG14441 (FBgn0029895)	CG3168 (FBgn0029896)	RpL17 (FBgn0029897)	CG14439 (FBgn0029898)	sov (FBgn0287725)	Coq7 (FBgn0029502)	shf (FBgn0003390)
Yeast	MODERN SPECIES	8	YGL188C	YGL188C-A	RPS26A (YGL189C)	CDC55 (YGL190C)	COX13 (YGL191W)	IME4 (YGL192W)	YGL193C	HOS2 (YGL194C)	YGL194C-A	GCN1 (YGL195W)	DSD1 (YGL196W)	MDS3 (YGL197W)	YIP4 (YGL198W)	YGL199C	EMP24 (YGL200C)	MCM6 (YGL201C) ##22	ARO8 (YGL202W)	KEX1 (YGL203C)	YGL204C	POX1 (YGL205W)	CHC1 (YGL206C)	SPT16 (YGL207W)	SIP2 (YGL208W)	MIG2 (YGL209W)	YPT32 (YGL210W)	NCS6 (YGL211W)	VAM7 (YGL212W)	SKI8 (YGL213C)	YGL214W	CLG1 (YGL215W)	KIP3 (YGL216W)
Fungi/Metazoa group	ANCESTRAL SPECIES																	ENSGT01050000244824.E ##22
Bilateria	ANCESTRAL SPECIES																	ENSGT01050000244824.E ##22
Chordata	ANCESTRAL SPECIES																	ENSGT01050000244824.E ##22
Vertebrata	ANCESTRAL SPECIES	1125															ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22
Gnathostomata	ANCESTRAL SPECIES	153										ENSGT01090000260070.A	ENSGT01050000244864.A.a.b	ENSGT00950000185010	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b
Elephant shark	MODERN SPECIES	1556					ENSCMIG00000006404	GJA1 (ENSCMIG00000006402)	gja13.2 (ENSCMIG00000006401)	hsdl1 (ENSCMIG00000006399)	tbc1d32 (ENSCMIG00000006395)	ENSCMIG00000006391	ENSCMIG00000006388	MAN1A1 (ENSCMIG00000006346)	fam184aa (ENSCMIG00000006316)	ENSCMIG00000006308	ENSCMIG00000006305	mcm9 (ENSCMIG00000006304) ##22	PLN (ENSCMIG00000006303)	CEP85L (ENSCMIG00000006302)	SLC35F1 (ENSCMIG00000006299)	nus1 (ENSCMIG00000006296)	ENSCMIG00000006292	ENSCMIG00000006291	gopc (ENSCMIG00000006289)	ENSCMIG00000006288	ENSCMIG00000006285	ENSCMIG00000006280	vgll2a (ENSCMIG00000006277)	rfx6 (ENSCMIG00000006276)	CCN6 (ENSCMIG00000006259)	tube1 (ENSCMIG00000006239)	ENSCMIG00000006232
Euteleostomi	ANCESTRAL SPECIES	11	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b	ENSGT00950000185010	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000166171	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b
Actinopterygii	ANCESTRAL SPECIES	39	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000166171	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Neopterygii	ANCESTRAL SPECIES	5	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000156772.b.d
Osteoglossocephalai	ANCESTRAL SPECIES	2	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b	ENSGT01030000235398	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00990000203619.A.b.b.a
Clupeocephala	ANCESTRAL SPECIES	1	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01030000235398	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00940000161329	ENSGT00940000155237	ENSGT00530000063359.A.n	ENSGT00530000063359.A.m.b
Otomorpha	ANCESTRAL SPECIES	41	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000155089	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a
Otophysi	ANCESTRAL SPECIES	7	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000155089	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Characiphysae	ANCESTRAL SPECIES	47	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000155089	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a
Channel catfish	MODERN SPECIES	17	SMPDL3A (ENSIPUG00000005204)	fabp7b (ENSIPUG00000005196)	fabp7b (ENSIPUG00000005185)	ENSIPUG00000005177	serinc1 (ENSIPUG00000005159)	hsf2 (ENSIPUG00000005103)	gja1 (ENSIPUG00000021248)	gja13.2 (ENSIPUG00000021240)	ENSIPUG00000021235	gja12.1 (ENSIPUG00000021219)	gja11 (ENSIPUG00000021208)	hsdl1 (ENSIPUG00000021179)	tbc1d32 (ENSIPUG00000021141)	MAN1A1 (ENSIPUG00000021110)	fam184a (ENSIPUG00000021045)	mcm9 (ENSIPUG00000021027) ##22	ENSIPUG00000021022	pln (ENSIPUG00000021018)	cep85l (ENSIPUG00000020991)	si:dkeyp-114g9.1 (ENSIPUG00000020973)	slc35f1 (ENSIPUG00000020952)	nus1 (ENSIPUG00000020930)	ENSIPUG00000020927	gopc (ENSIPUG00000020909)	dcbld1 (ENSIPUG00000020885)	vgll2 (ENSIPUG00000020875)	rfx6 (ENSIPUG00000020835)	tdrd15 (ENSIPUG00000020830)	igf2r (ENSIPUG00000020786)	slc22a2 (ENSIPUG00000020774)	plg (ENSIPUG00000020743)
Characiphysae_b	ANCESTRAL SPECIES	40	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000155089	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a
Characoidei	ANCESTRAL SPECIES	48	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000175008	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a
Red-bellied piranha	MODERN SPECIES	23	clvs2 (ENSPNAG00000015061)	smpdl3a (ENSPNAG00000015048)	fabp7b (ENSPNAG00000015003)	pkib (ENSPNAG00000014605)	serinc1 (ENSPNAG00000014593)	hsf2 (ENSPNAG00000003171)	gja13.2 (ENSPNAG00000014542)	ENSPNAG00000003148	gja12.1 (ENSPNAG00000003145)	gja13.1 (ENSPNAG00000014494)	ENSPNAG00000014481	hsdl1 (ENSPNAG00000014452)	tbc1d32 (ENSPNAG00000014433)	MAN1A1 (ENSPNAG00000014394)	FAM184A (ENSPNAG00000003079)	mcm9 (ENSPNAG00000014201) ##22	CEP85L (ENSPNAG00000014165)	PLN (ENSPNAG00000014144)	si:dkeyp-114g9.1 (ENSPNAG00000014138)	SLC35F1 (ENSPNAG00000003022)	nus1 (ENSPNAG00000014064)	ENSPNAG00000014026	gopc (ENSPNAG00000013997)	dcbld1 (ENSPNAG00000002996)	ENSPNAG00000013885	vgll2a (ENSPNAG00000013873)	dusp23a (ENSPNAG00000002967)	ENSPNAG00000002962	SNX9 (ENSPNAG00000002923)	ENSPNAG00000013609	pomcb (ENSPNAG00000013581)
Mexicana tetra	MODERN SPECIES	18	MDGA2 (ENSAMXG00000020543)	gja1b (ENSAMXG00000025077)	gja13.2 (ENSAMXG00000025076)	ENSAMXG00000025075	gja12.1 (ENSAMXG00000025074)	gja13.1 (ENSAMXG00000025063)	hsdl1 (ENSAMXG00000017962)	ENSAMXG00000035529	tbc1d32 (ENSAMXG00000017949)	ENSAMXG00000042869	ENSAMXG00000043702	ENSAMXG00000039225	MAN1A1 (ENSAMXG00000017945)	KLHL10 (ENSAMXG00000018292)	FAM184A (ENSAMXG00000017943)	mcm9 (ENSAMXG00000017941) ##22	CEP85L (ENSAMXG00000017939)	ENSAMXG00000043099	PLN (ENSAMXG00000029466)	si:dkeyp-114g9.1 (ENSAMXG00000017935)	SLC35F1 (ENSAMXG00000017930)	CDK19 (ENSAMXG00000014126)	amd1 (ENSAMXG00000029501)	ppil4 (ENSAMXG00000014167)	ENSAMXG00000014188	ENSAMXG00000037174	ENSAMXG00000039315	ENSAMXG00000037095	ENSAMXG00000032484	ENSAMXG00000031847	ginm1 (ENSAMXG00000014256)
Electric eel	MODERN SPECIES	53							gja1b (ENSEEEG00000007407)	gja13.2 (ENSEEEG00000007408)	ENSEEEG00000007411	ENSEEEG00000007413	gja11 (ENSEEEG00000007418)	hsdl1 (ENSEEEG00000007419)	tbc1d32 (ENSEEEG00000007421)	MAN1A1 (ENSEEEG00000007422)	FAM184A (ENSEEEG00000007466)	mcm9 (ENSEEEG00000007472) ##22	CEP85L (ENSEEEG00000007473)	PLN (ENSEEEG00000007474)	si:dkeyp-114g9.1 (ENSEEEG00000007476)	SLC35F1 (ENSEEEG00000007477)	nus1 (ENSEEEG00000007478)	ENSEEEG00000007480	gopc (ENSEEEG00000007481)	dcbld1 (ENSEEEG00000007482)	vgll2a (ENSEEEG00000007483)	rfx6 (ENSEEEG00000007485)	tdrd15 (ENSEEEG00000007494)	LRFN2 (ENSEEEG00000007497)	zgc:112001 (ENSEEEG00000007501)	btbd9 (ENSEEEG00000007507)	ZFAND3 (ENSEEEG00000007521)
Cyprinoidei	ANCESTRAL SPECIES	8	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.b.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00390000013943	ENSGT00940000155089	ENSGT00940000155208.b	ENSGT00990000203619.A.b.b.a	ENSGT00530000063927.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	157	ENSGT00940000156713.m.b	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b.c	ENSGT00940000155906.g	ENSGT01090000260070.A.qc.a	ENSGT01050000244864.A.a.b.a.b.b.a.b	ENSGT01050000244864.A.a.b.a.a.b.c	ENSGT01050000244864.A.a.b.a.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b.b	ENSGT01050000244864.A.a.a.d	ENSGT00940000160053.c	ENSGT00940000153528.a.b.a.b.h	ENSGT00940000158188.e.a.b	ENSGT00940000158188.e.b	ENSGT00530000063669.b.a.a	ENSGT01050000244824.E.a ##22	ENSGT00390000002403.o.a	ENSGT00620000087993.a.a.c	ENSGT00620000089228.d	ENSGT00390000015655.b.a	ENSGT00390000003223.b.a.b	ENSGT00940000162914.a.a	ENSGT00940000156535.c.b	ENSGT00940000157334.`d.a	ENSGT00530000063353.a.b.a.c	ENSGT01050000244879.b.a.b.b.b	ENSGT00940000162581.d	ENSGT00390000013943.e	ENSGT00940000155089.z.b	ENSGT00940000155208.b.f	ENSGT00990000203619.A.b.b.a.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	18	mrpl16 (ENSCARG00000014021)	ENSCARG00000014017	ENSCARG00000014007	jam2a (ENSCARG00000013978)	atp5pf (ENSCARG00000013964)	APP (ENSCARG00000005185)	cyyr1 (ENSCARG00000004821)	ADAMTS1 (ENSCARG00000004657)	ADAMTS5 (ENSCARG00000004544)	NCAM2 (ENSCARG00000004349)	rpl24 (ENSCARG00000004310)	cep97 (ENSCARG00000004292)	eed (ENSCARG00000004215)	hikeshi (ENSCARG00000004190)	FAM184A (ENSCARG00000004101)	mcm9 (ENSCARG00000004082) ##22	PLN (ENSCARG00000004074)	CEP85L (ENSCARG00000004048)	si:dkeyp-114g9.1 (ENSCARG00000004018)	SLC35F1 (ENSCARG00000070178)	nus1 (ENSCARG00000070177)	ENSCARG00000070176	gopc (ENSCARG00000070175)	dcbld1 (ENSCARG00000070174)	vgll2a (ENSCARG00000070173)	rfx6 (ENSCARG00000070161)	tdrd15 (ENSCARG00000070155)	ube2f (ENSCARG00000070154)	si:ch211-93g23.2 (ENSCARG00000070152)	klf7a (ENSCARG00000070151)	HECW2 (ENSCARG00000070129)
Goldfish	MODERN SPECIES	12	matn3a (ENSCARG00000056619)	ttc32 (ENSCARG00000056612)	mixl1 (ENSCARG00000056308)	lin9 (ENSCARG00000056261)	ENSCARG00000056239	parp1 (ENSCARG00000055040)	AFDN (ENSCARG00000054722)	unc93a (ENSCARG00000054635)	ENSCARG00000054609	plg (ENSCARG00000052340)	slc22a2 (ENSCARG00000052074)	igf2r (ENSCARG00000049418)	tdrd15 (ENSCARG00000049233)	rfx6 (ENSCARG00000048860)	ENSCARG00000048796	mcm9 (ENSCARG00000048754) ##22	PLN (ENSCARG00000048738)	CEP85L (ENSCARG00000048719)	si:dkeyp-114g9.1 (ENSCARG00000048599)	SLC35F1 (ENSCARG00000048538)	nus1 (ENSCARG00000048521)	ENSCARG00000048514	gopc (ENSCARG00000048484)	dcbld1 (ENSCARG00000048466)	dusp23a (ENSCARG00000048458)	ENSCARG00000048442	ENSCARG00000048325	ENSCARG00000048272	SNX9 (ENSCARG00000047902)	ENSCARG00000047850	pomcb (ENSCARG00000047834)
Cyprininae_a	ANCESTRAL SPECIES	99	ENSGT00940000157632.i	ENSGT00950000183182.a.b.e	ENSGT00940000156713.m.b	ENSGT01030000234623.a.a.a.a.b.c	ENSGT00940000155906.g	ENSGT01090000260070.A.qc.a.a	ENSGT01050000244864.A.a.b.a.b.b.a.b	ENSGT01050000244864.A.a.b.a.a.b.c	ENSGT01050000244864.A.a.b.a.a.a.a	ENSGT01050000244864.A.a.b.a.b.b.b.b	ENSGT01050000244864.A.a.a.d	ENSGT00940000160053.c	ENSGT00940000153528.a.b.a.b.h	ENSGT00940000158188.e.b	ENSGT00530000063669.b.a.a	ENSGT01050000244824.E.a ##22	ENSGT00620000087993.a.a.c	ENSGT00390000002403.o.a	ENSGT00620000089228.d	ENSGT00390000015655.b.a	ENSGT00390000003223.b.b	ENSGT00940000162914.a.b	ENSGT00940000156535.d	ENSGT00940000156535.c.b	ENSGT00940000157334.`d.a	ENSGT00530000063353.a.b.a.c	ENSGT01050000244879.b.a.b.b.b	ENSGT00940000162581.d	ENSGT00390000013943.e	ENSGT00940000155089.z.b	ENSGT00940000155208.b.f
Common carp reference	MODERN SPECIES	34	pkib (ENSCCRG00000033902)	serinc1 (ENSCCRG00000033914)	hsf2 (ENSCCRG00000034600)	gja1b (ENSCCRG00000069131)	gja13.2 (ENSCCRG00000037210)	ENSCCRG00000078986	gja12.1 (ENSCCRG00000064340)	gja13.1 (ENSCCRG00000061348)	gja11 (ENSCCRG00000056893)	ENSCCRG00000081335	hsdl1 (ENSCCRG00000047589)	ENSCCRG00000075868	tbc1d32 (ENSCCRG00000047573)	MAN1A1 (ENSCCRG00000046692)	FAM184A (ENSCCRG00000082131)	mcm9 (ENSCCRG00000019118) ##22	CEP85L (ENSCCRG00000037502)	si:dkeyp-114g9.1 (ENSCCRG00000037499)	SLC35F1 (ENSCCRG00000072579)	nus1 (ENSCCRG00000042657)	ENSCCRG00000030299	ENSCCRG00000071491	gopc (ENSCCRG00000012130)	dcbld1 (ENSCCRG00000030294)	vgll2a (ENSCCRG00000049116)	rfx6 (ENSCCRG00000001496)	tdrd15 (ENSCCRG00000073854)	igf2r (ENSCCRG00000079556)	slc22a2 (ENSCCRG00000049518)	plg (ENSCCRG00000049578)	ENSCCRG00000062299
Golden-line barbel	MODERN SPECIES	339															ENSSGRG00000036121	mcm9 (ENSSGRG00000036125) ##22	CEP85L (ENSSGRG00000036169)	PLN (ENSSGRG00000036175)	si:dkeyp-114g9.1 (ENSSGRG00000036176)	SLC35F1 (ENSSGRG00000036180)	nus1 (ENSSGRG00000036182)	ENSSGRG00000036184	gopc (ENSSGRG00000036185)	dcbld1 (ENSSGRG00000036187)	vgll2a (ENSSGRG00000036188)	tdrd15 (ENSSGRG00000036190)	igf2r (ENSSGRG00000036202)	plg (ENSSGRG00000036411)	ttll2 (ENSSGRG00000037561)	unc93a (ENSSGRG00000037564)	AFDN (ENSSGRG00000037589)
Cyprininae	ANCESTRAL SPECIES	54	ENSGT00940000156713.m.a	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b.d	ENSGT00940000155906.h	ENSGT01090000260070.A.qc.b	ENSGT01050000244864.A.a.b.a.b.b.a.a	ENSGT01050000244864.A.a.b.a.a.b.d	ENSGT01050000244864.A.a.b.a.a.a.b	ENSGT01050000244864.A.a.b.a.b.b.b.a	ENSGT01050000244864.A.a.a.c	ENSGT00940000160053.d	ENSGT00940000153528.a.b.a.b.g	ENSGT00940000158188.f.b	ENSGT00940000158188.e.a.a.b	ENSGT00530000063669.b.a.b	ENSGT01050000244824.E.b ##22	ENSGT00390000002403.o.b	ENSGT00620000087993.a.a.d	ENSGT00620000089228.c	ENSGT00390000015655.b.b.a	ENSGT00390000015655.b.b.b	ENSGT00390000003223.a	ENSGT00940000156535.c.a	ENSGT00940000157334.`d.b.a	ENSGT00530000063353.a.b.a.d	ENSGT01050000244879.b.a.b.b.a	ENSGT00940000162581.c	ENSGT00390000013943.f	ENSGT00940000155089.z.a	ENSGT00940000155208.b.e	ENSGT00990000203619.A.b.b.a.c
Cyprininae_a	ANCESTRAL SPECIES	118	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b.d	ENSGT00940000155906.h	ENSGT01090000260070.A.qc.b	ENSGT01040000240566	ENSGT01050000244864.A.a.b.a.b.b.a.a	ENSGT01050000244864.A.a.b.a.a.b.d	ENSGT01050000244864.A.a.b.a.a.a.b	ENSGT01050000244864.A.a.b.a.b.b.b.a	ENSGT01050000244864.A.a.a.c	ENSGT00940000160053.d	ENSGT00940000153528.a.b.a.b.g	ENSGT00940000158188.f.b	ENSGT00940000158188.e.a.a.b	ENSGT00530000063669.b.a.b	ENSGT01050000244824.E.b ##22	ENSGT00620000087993.a.a.d	ENSGT00620000089228.c	ENSGT00390000015655.b.b.b	ENSGT00390000003223.a	ENSGT00940000162914.a.a	ENSGT00940000156535.c.a	ENSGT00940000157334.`d.b.a	ENSGT00530000063353.a.b.a.d	ENSGT01050000244879.b.a.b.b.a	ENSGT00940000162581.c	ENSGT00390000013943.f	ENSGT00940000155089.z.a	ENSGT00940000155208.b.e	ENSGT00990000203619.A.b.b.a.c	ENSGT00530000063927.a.a
Golden-line barbel	MODERN SPECIES	377														MAN1A1 (ENSSGRG00000033496)	FAM184A (ENSSGRG00000033442)	mcm9 (ENSSGRG00000033439) ##22	CEP85L (ENSSGRG00000033438)	si:dkeyp-114g9.1 (ENSSGRG00000033437)	SLC35F1 (ENSSGRG00000033436)	nus1 (ENSSGRG00000033388)	ENSSGRG00000033387	ENSSGRG00000033386	gopc (ENSSGRG00000033385)	dcbld1 (ENSSGRG00000033383)	ENSSGRG00000033382	vgll2a (ENSSGRG00000033381)	rfx6 (ENSSGRG00000033380)	ENSSGRG00000033379	igf2r (ENSSGRG00000033367)	slc22a2 (ENSSGRG00000033365)	plg (ENSSGRG00000033092)
Common carp reference	MODERN SPECIES	28	fabp7b (ENSCCRG00000055271)	ENSCCRG00000030453	serinc1 (ENSCCRG00000069638)	hsf2 (ENSCCRG00000034607)	ENSCCRG00000068973	gja1b (ENSCCRG00000058863)	ENSCCRG00000037195	gja13.2 (ENSCCRG00000056694)	ENSCCRG00000064082	gja12.1 (ENSCCRG00000057939)	gja11 (ENSCCRG00000081165)	hsdl1 (ENSCCRG00000058409)	tbc1d32 (ENSCCRG00000037241)	MAN1A1 (ENSCCRG00000071783)	FAM184A (ENSCCRG00000019129)	mcm9 (ENSCCRG00000046619) ##22	CEP85L (ENSCCRG00000009689)	si:dkeyp-114g9.1 (ENSCCRG00000065118)	nus1 (ENSCCRG00000012126)	gopc (ENSCCRG00000057467)	dcbld1 (ENSCCRG00000054273)	vgll2a (ENSCCRG00000001900)	rfx6 (ENSCCRG00000049119)	tdrd15 (ENSCCRG00000080708)	igf2r (ENSCCRG00000052919)	slc22a2 (ENSCCRG00000000900)	plg (ENSCCRG00000030183)	ENSCCRG00000077968	ENSCCRG00000072655	ttll2 (ENSCCRG00000043597)	ENSCCRG00000057699
Zebrafish	MODERN SPECIES	12	smpdl3a (ENSDARG00000053119)	fabp7b (ENSDARG00000034650)	pkib (ENSDARG00000053110)	serinc1 (ENSDARG00000009106)	hsf2 (ENSDARG00000053097)	gja1b (ENSDARG00000041799)	gja13.2 (ENSDARG00000076789)	ENSDARG00000041792	gja12.1 (ENSDARG00000041797)	gja13.1 (ENSDARG00000041787)	gja11 (ENSDARG00000069411)	hsdl1 (ENSDARG00000041736)	tbc1d32 (ENSDARG00000041734)	MAN1A1 (ENSDARG00000005652)	FAM184A (ENSDARG00000014081)	mcm9 (ENSDARG00000013528) ##22	CEP85L (ENSDARG00000020777)	si:dkeyp-114g9.1 (ENSDARG00000069401)	SLC35F1 (ENSDARG00000053003)	nus1 (ENSDARG00000027813)	gopc (ENSDARG00000023117)	dcbld1 (ENSDARG00000015907)	vgll2a (ENSDARG00000041706)	rfx6 (ENSDARG00000041702)	tdrd15 (ENSDARG00000014039)	igf2r (ENSDARG00000006094)	slc22a2 (ENSDARG00000030530)	plg (ENSDARG00000023111)	ttll2 (ENSDARG00000077853)	ENSDARG00000093808	pimr213 (ENSDARG00000073913)
Clupeiformes	ANCESTRAL SPECIES	75	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.n	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000155843	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b.a	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00390000008373	ENSGT00940000156638
Atlantic herring	MODERN SPECIES	6	serinc1 (ENSCHAG00000015698)	hsf2 (ENSCHAG00000015634)	gja1b (ENSCHAG00000015623)	ENSCHAG00000015600	ENSCHAG00000015593	ENSCHAG00000015552	gja12.1 (ENSCHAG00000015524)	ENSCHAG00000015512	gja11 (ENSCHAG00000015504)	hsdl1 (ENSCHAG00000015497)	ENSCHAG00000015492	tbc1d32 (ENSCHAG00000015432)	MAN1A1 (ENSCHAG00000015286)	ENSCHAG00000015127	FAM184A (ENSCHAG00000014962)	mcm9 (ENSCHAG00000014929) ##22	ENSCHAG00000014906	PLN (ENSCHAG00000014901)	CEP85L (ENSCHAG00000014848)	si:dkeyp-114g9.1 (ENSCHAG00000014830)	SLC35F1 (ENSCHAG00000014818)	ENSCHAG00000014749	nus1 (ENSCHAG00000014739)	ENSCHAG00000014735	ginm1 (ENSCHAG00000014727)	katna1 (ENSCHAG00000014562)	ENSCHAG00000014535	ENSCHAG00000014041	ENSCHAG00000013990	ENSCHAG00000013798	ENSCHAG00000012903
Denticle herring	MODERN SPECIES	149															ENSDCDG00000007968	mcm9 (ENSDCDG00000008009) ##22	CEP85L (ENSDCDG00000008037)	PLN (ENSDCDG00000008055)	si:dkeyp-114g9.1 (ENSDCDG00000008063)	SLC35F1 (ENSDCDG00000008120)
Euteleosteomorpha	ANCESTRAL SPECIES	318							ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22
Protacanthopterygii	ANCESTRAL SPECIES	33	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a	ENSGT01050000244864.A.a.b.a.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00940000155237	ENSGT00530000063359.A.n	ENSGT00530000063359.A.m.b	ENSGT00530000063359.A.m.a
Salmoninae	ANCESTRAL SPECIES	267	ENSGT00940000160565.c.b	ENSGT00510000049207.a	ENSGT00940000157632.q	ENSGT00950000183182.a.b.g	ENSGT00940000156713.m.k	ENSGT00960000186966.b	ENSGT01030000234623.a.a.a.a.b.m	ENSGT00940000155906.b	ENSGT01090000260070.A.gc.a	ENSGT01050000244864.A.a.b.a.b.h	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a.g	ENSGT01050000244864.A.a.b.a.b.g.a	ENSGT00940000158188.t.b	ENSGT00530000063669.b.a.c	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a.f	ENSGT00390000002403.a	ENSGT00620000089228.e	ENSGT00390000015655.b.f	ENSGT00390000003223.n	ENSGT00940000162914	ENSGT00940000156535.e	ENSGT00940000157334.wc.a	ENSGT00530000063353.a.b.a.e	ENSGT01050000244879.b.a.b.b.c	ENSGT00940000155237.hb.a	ENSGT00530000063359.A.n.h	ENSGT00990000203619.A.b.b.a.i.a	ENSGT00940000155208.b.j	ENSGT00940000155089.n.b
Salmoninae_a	ANCESTRAL SPECIES	42	ENSGT00510000049207.a.a	ENSGT00940000157632.q	ENSGT00950000183182.a.b.g	ENSGT00940000156713.m.k	ENSGT00960000186966.b	ENSGT01030000234623.a.a.a.a.b.m	ENSGT00940000155906.b	ENSGT01090000260070.A.gc.a	ENSGT01050000244864.A.a.b.a.b.h	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a.g	ENSGT01050000244864.A.a.b.a.b.g.a	ENSGT00990000214155	ENSGT00940000158188.t.a.a	ENSGT00530000063669.b.a.c	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a.f	ENSGT00390000002403.a	ENSGT00620000089228.e	ENSGT00390000015655.b.f	ENSGT00390000003223.n	ENSGT00940000162914	ENSGT00940000156535.e	ENSGT00940000157334.wc.a	ENSGT00530000063353.a.b.a.e	ENSGT01050000244879.b.a.b.b.c	ENSGT00940000155237.hb.a	ENSGT00530000063359.A.n.h	ENSGT00990000203619.A.b.b.a.i.a.a	ENSGT00990000203619.A.b.b.a.i.a.b	ENSGT00940000155208.b.j
Oncorhynchus	ANCESTRAL SPECIES	35	ENSGT00510000049207.a.a	ENSGT00940000157632.q	ENSGT00950000183182.a.b.g	ENSGT00940000156713.m.k	ENSGT00960000186966.b	ENSGT01030000234623.a.a.a.a.b.m	ENSGT00940000155906.b	ENSGT01090000260070.A.gc.a	ENSGT01050000244864.A.a.b.a.b.h	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a.g	ENSGT01050000244864.A.a.b.a.b.g.a	ENSGT00990000214155	ENSGT00940000158188.t.b	ENSGT00530000063669.b.a.c	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a.f	ENSGT00390000002403.a	ENSGT00620000089228.e	ENSGT00390000015655.b.f	ENSGT00390000003223.n	ENSGT00940000162914	ENSGT00940000156535.e	ENSGT00940000157334.wc.a	ENSGT00530000063353.a.b.a.e	ENSGT01050000244879.b.a.b.b.c	ENSGT00940000155237.hb.a	ENSGT00530000063359.A.n.h	ENSGT00550000074912.ib.b	ENSGT00990000203619.A.b.b.a.i.a.a	ENSGT00990000203619.A.b.b.a.i.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	53	ENSGT00510000049207.a.a	ENSGT00940000157632.q	ENSGT00950000183182.a.b.g	ENSGT00940000156713.m.k	ENSGT00960000186966.b	ENSGT01030000234623.a.a.a.a.b.m	ENSGT00940000155906.b	ENSGT01090000260070.A.gc.a	ENSGT01050000244864.A.a.b.a.b.h	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.a.a.g	ENSGT01050000244864.A.a.b.a.b.g.a	ENSGT00990000214155	ENSGT00940000158188.t.b	ENSGT00530000063669.b.a.c	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a.f	ENSGT00390000002403.a	ENSGT00620000089228.e	ENSGT00390000015655.b.f	ENSGT00390000003223.n	ENSGT00940000162914	ENSGT00940000156535.e	ENSGT00940000157334.wc.a	ENSGT00530000063353.a.b.a.e	ENSGT01050000244879.b.a.b.b.c	ENSGT00940000155237.hb.a	ENSGT00530000063359.A.n.h	ENSGT00550000074912.ib.b	ENSGT00990000203619.A.b.b.a.i.a.a	ENSGT00990000203619.A.b.b.a.i.a.b
Coho salmon	MODERN SPECIES	3	ENSOKIG00005009237	clvs2 (ENSOKIG00005009259)	smpdl3a (ENSOKIG00005009286)	fabp7b (ENSOKIG00005009336)	ENSOKIG00005009355	serinc1 (ENSOKIG00005009398)	hsf2 (ENSOKIG00005010107)	gja1b (ENSOKIG00005010141)	ENSOKIG00005010149	ENSOKIG00005010164	gja12.1 (ENSOKIG00005010173)	ENSOKIG00005010182	ENSOKIG00005010188	MAN1A1 (ENSOKIG00005010231)	FAM184A (ENSOKIG00005010419)	mcm9 (ENSOKIG00005010652) ##22	CEP85L (ENSOKIG00005010685)	PLN (ENSOKIG00005010705)	ENSOKIG00005010706	ENSOKIG00005010710	ENSOKIG00005010713	si:dkeyp-114g9.1 (ENSOKIG00005010716)	SLC35F1 (ENSOKIG00005010737)	ENSOKIG00005010752	nus1 (ENSOKIG00005010758)	ENSOKIG00005010772	gopc (ENSOKIG00005010788)	dcbld1 (ENSOKIG00005010984)	vgll2a (ENSOKIG00005011029)	rfx6 (ENSOKIG00005011048)	AFDN (ENSOKIG00005011323)
Chinook salmon	MODERN SPECIES	29	nkain2 (ENSOTSG00005023387)	ENSOTSG00005023389	clvs2 (ENSOTSG00005023393)	smpdl3a (ENSOTSG00005023394)	fabp7b (ENSOTSG00005023395)	ENSOTSG00005023414	serinc1 (ENSOTSG00005023423)	hsf2 (ENSOTSG00005024763)	gja1b (ENSOTSG00005024783)	ENSOTSG00005024784	ENSOTSG00005024785	gja12.1 (ENSOTSG00005024788)	ENSOTSG00005024789	MAN1A1 (ENSOTSG00005024794)	FAM184A (ENSOTSG00005024803)	mcm9 (ENSOTSG00005024858) ##22	CEP85L (ENSOTSG00005024861)	PLN (ENSOTSG00005024868)	si:dkeyp-114g9.1 (ENSOTSG00005024869)	SLC35F1 (ENSOTSG00005024870)	nus1 (ENSOTSG00005024872)	ENSOTSG00005024874	gopc (ENSOTSG00005024878)	ENSOTSG00005025105	dcbld1 (ENSOTSG00005025108)	vgll2a (ENSOTSG00005025109)	rfx6 (ENSOTSG00005025110)	AFDN (ENSOTSG00005025177)	unc93a (ENSOTSG00005025180)	ENSOTSG00005025181	ENSOTSG00005025182
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000002903	smpdl3a (ENSOMYG00000046016)	fabp7b (ENSOMYG00000046019)	ENSOMYG00000046021	serinc1 (ENSOMYG00000046045)	hsf2 (ENSOMYG00000046064)	gja1b (ENSOMYG00000046071)	ENSOMYG00000046075	ENSOMYG00000046079	gja12.1 (ENSOMYG00000046083)	ENSOMYG00000046084	ENSOMYG00000046087	ENSOMYG00000073631	MAN1A1 (ENSOMYG00000046187)	FAM184A (ENSOMYG00000046423)	mcm9 (ENSOMYG00000046448) ##22	CEP85L (ENSOMYG00000046460)	PLN (ENSOMYG00000046479)	si:dkeyp-114g9.1 (ENSOMYG00000046496)	SLC35F1 (ENSOMYG00000046508)	nus1 (ENSOMYG00000046515)	ENSOMYG00000046520	gopc (ENSOMYG00000046531)	dcbld1 (ENSOMYG00000046546)	vgll2a (ENSOMYG00000046551)	rfx6 (ENSOMYG00000064965)	ENSOMYG00000046654	ENSOMYG00000046769	ENSOMYG00000046772	ENSOMYG00000046776	ENSOMYG00000046778
Salmo	ANCESTRAL SPECIES	26	ENSGT00770000121629.h	ENSGT00940000157632.q	ENSGT00950000183182.a.b.g	ENSGT00940000156713.m.k	ENSGT00960000186966.b	ENSGT01030000234623.a.a.a.a.b.m	ENSGT00940000155906.b	ENSGT01090000260070.A.gc.a	ENSGT01050000244864.A.a.b.a.b.h	ENSGT01050000244864.A.a.b.a.a.b.g	ENSGT01050000244864.A.a.b.a.a.a.g	ENSGT01050000244864.A.a.b.a.b.g.a	ENSGT00990000214155	ENSGT00940000158188.t.a.a	ENSGT00530000063669.b.a.c	ENSGT01050000244824.E ##22	ENSGT00390000002403.a	ENSGT00620000087993.a.a.f	ENSGT00620000089228.e	ENSGT00390000015655.b.f	ENSGT00390000003223.n	ENSGT00940000162914	ENSGT00940000156535.e	ENSGT00940000157334.wc.a	ENSGT00530000063353.a.b.a.e	ENSGT01050000244879.b.a.b.b.c	ENSGT00940000155237.hb.a	ENSGT00530000063359.A.n.h	ENSGT00990000203619.A.b.b.a.i.a.a	ENSGT00990000203619.A.b.b.a.i.a.b	ENSGT00940000155208.b.j
River trout	MODERN SPECIES	28	ENSSTUG00000021436	ENSSTUG00000021431	clvs2 (ENSSTUG00000021426)	smpdl3a (ENSSTUG00000021404)	fabp7b (ENSSTUG00000021396)	serinc1 (ENSSTUG00000020826)	hsf2 (ENSSTUG00000020771)	gja1b (ENSSTUG00000020760)	ENSSTUG00000020749	ENSSTUG00000020734	gja12.1 (ENSSTUG00000020718)	ENSSTUG00000020710	ENSSTUG00000020693	MAN1A1 (ENSSTUG00000020269)	FAM184A (ENSSTUG00000019954)	mcm9 (ENSSTUG00000019809) ##22	PLN (ENSSTUG00000019796)	CEP85L (ENSSTUG00000019768)	si:dkeyp-114g9.1 (ENSSTUG00000019745)	SLC35F1 (ENSSTUG00000019695)	nus1 (ENSSTUG00000019688)	ENSSTUG00000019674	gopc (ENSSTUG00000019230)	dcbld1 (ENSSTUG00000019179)	vgll2a (ENSSTUG00000019161)	rfx6 (ENSSTUG00000018993)	AFDN (ENSSTUG00000018387)	unc93a (ENSSTUG00000018299)	ENSSTUG00000018291	ENSSTUG00000018283	plg (ENSSTUG00000015531)
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000007653	ENSSSAG00000094510	ENSSSAG00000101175	clvs2 (ENSSSAG00000080674)	smpdl3a (ENSSSAG00000080665)	fabp7 (ENSSSAG00000080668)	ENSSSAG00000080670	serc1 (ENSSSAG00000039454)	hsf2 (ENSSSAG00000039966)	gja1b (ENSSSAG00000098898)	ENSSSAG00000103178	cx32 (ENSSSAG00000104779)	ENSSSAG00000040230	MAN1A1 (ENSSSAG00000040605)	FAM184A (ENSSSAG00000042138)	mcm9 (ENSSSAG00000097790) ##22	CEP85L (ENSSSAG00000042804)	ENSSSAG00000042820	si:dkeyp-114g9.1 (ENSSSAG00000042830)	SLC35F1 (ENSSSAG00000042866)	ngbr (ENSSSAG00000042933)	gopc (ENSSSAG00000093215)	ENSSSAG00000098406	dcbld1 (ENSSSAG00000043493)	vgll2a (ENSSSAG00000043507)	rfx6 (ENSSSAG00000043529)	ENSSSAG00000043780	ENSSSAG00000083328	ENSSSAG00000099331	ENSSSAG00000048613	plg (ENSSSAG00000048657)
Huchen	MODERN SPECIES	247														ENSHHUG00000026641	FAM184A (ENSHHUG00000026643)	mcm9 (ENSHHUG00000026703) ##22	CEP85L (ENSHHUG00000026715)	PLN (ENSHHUG00000026729)	si:dkeyp-114g9.1 (ENSHHUG00000026731)	SLC35F1 (ENSHHUG00000026735)	nus1 (ENSHHUG00000026743)	ENSHHUG00000026753	gopc (ENSHHUG00000026761)	ENSHHUG00000026916	dcbld1 (ENSHHUG00000026919)	vgll2a (ENSHHUG00000026942)	rfx6 (ENSHHUG00000026947)	AFDN (ENSHHUG00000026994)	unc93a (ENSHHUG00000027064)	ENSHHUG00000027072	plg (ENSHHUG00000027077)
Northern pike	MODERN SPECIES	17	fabp7 (ENSELUG00000020656)	ENSELUG00000020679	serinc1 (ENSELUG00000020716)	hsf2 (ENSELUG00000020745)	gja1b (ENSELUG00000020758)	ENSELUG00000020771	ENSELUG00000020783	gja12.1 (ENSELUG00000032492)	ENSELUG00000020789	gja11 (ENSELUG00000020815)	hsdl1 (ENSELUG00000020870)	tbc1d32 (ENSELUG00000020903)	MAN1A1 (ENSELUG00000020946)	FAM184A (ENSELUG00000021031)	ENSELUG00000030925	mcm9 (ENSELUG00000021066) ##22	CEP85L (ENSELUG00000021092)	PLN (ENSELUG00000021075)	si:dkeyp-114g9.1 (ENSELUG00000021117)	SLC35F1 (ENSELUG00000021140)	nus1 (ENSELUG00000021162)	ENSELUG00000021167	gopc (ENSELUG00000021209)	dcbld1 (ENSELUG00000021262)	vgll2a (ENSELUG00000021293)	rfx6 (ENSELUG00000021428)	tdrd15 (ENSELUG00000021445)	AFDN (ENSELUG00000021755)	unc93a (ENSELUG00000026014)	ENSELUG00000034371	ttll2 (ENSELUG00000021820)
Acanthomorphata	ANCESTRAL SPECIES	224					ENSGT00510000049207.a	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.m	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000156535
Euacanthomorphacea	ANCESTRAL SPECIES	146												ENSGT00940000156535	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b
Percomorphaceae	ANCESTRAL SPECIES	71											ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c	ENSGT01030000234534.A.c.b.b.b
Tiger tail seahorse	MODERN SPECIES	465	ENSHCOG00000000595	COX7A2 (ENSHCOG00000006862)	ENSHCOG00000006840	ENSHCOG00000006820	ENSHCOG00000006789	ENSHCOG00000006767	ENSHCOG00000006754	eif2b4 (ENSHCOG00000006727)	atraid (ENSHCOG00000006717)	snx17 (ENSHCOG00000006690)	znf513a (ENSHCOG00000006652)	ENSHCOG00000006643	ENSHCOG00000006611	FNDC4 (ENSHCOG00000006607)	hsf2 (ENSHCOG00000000774)	mcm9 (ENSHCOG00000006578) ##22	gja1b (ENSHCOG00000006554)	ENSHCOG00000006547	ENSHCOG00000006527	ENSHCOG00000006506	insm1a (ENSHCOG00000006459)	CFAP61 (ENSHCOG00000006457)	crnkl1 (ENSHCOG00000006420)	naa20 (ENSHCOG00000006379)
Percomorphaceae_B	ANCESTRAL SPECIES	34														ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a
Percomorphaceae_C	ANCESTRAL SPECIES	28														ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01030000235398	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT01010000222287.B.b.a.a.b.a	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b	ENSGT00980000199126	ENSGT00390000011674	ENSGT00550000075141	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01030000235398	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b
Carangaria	ANCESTRAL SPECIES	31	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b	ENSGT00980000199126	ENSGT00390000011674	ENSGT00550000075141	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a
Carangaria_A	ANCESTRAL SPECIES	74	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b	ENSGT00980000199126	ENSGT00390000011674	ENSGT00550000075141	ENSGT00940000160597	ENSGT00740000116948	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a
Barramundi perch	MODERN SPECIES	362					ENSLCAG00010012620	gopc (ENSLCAG00010012631)	PM20D2 (ENSLCAG00010012648)	cfap206 (ENSLCAG00010012656)	ENSLCAG00010012660	rmdn3 (ENSLCAG00010012666)	rad51 (ENSLCAG00010012671)	ENSLCAG00010012696	ddx51 (ENSLCAG00010012700)	smim8 (ENSLCAG00010012705)	gjb7 (ENSLCAG00010012708)	mcm9 (ENSLCAG00010012714) ##22	ENSLCAG00010012718	ENSLCAG00010012719	gja1b (ENSLCAG00010012722)	hsf2 (ENSLCAG00010012734)	serinc1 (ENSLCAG00010012740)	SLC35F1 (ENSLCAG00010012749)	nus1 (ENSLCAG00010012752)
Pleuronectoidei	ANCESTRAL SPECIES	112											ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT00940000166728	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223
Turbot	MODERN SPECIES	12	ENSSMAG00000036768	ENSSMAG00000017159	ENSSMAG00000032682	ENSSMAG00000017037	ENSSMAG00000017023	ENSSMAG00000018120	ENSSMAG00000030194	ENSSMAG00000024318	ENSSMAG00000018065	ENSSMAG00000037984	ENSSMAG00000025251	ENSSMAG00000018000	ENSSMAG00000029076	ENSSMAG00000017922	ENSSMAG00000016857	ENSSMAG00000016885 ##22	ENSSMAG00000016937	gja1b (ENSSMAG00000016982)	hsf2 (ENSSMAG00000017011)	ENSSMAG00000030631	serinc1 (ENSSMAG00000016788)	ENSSMAG00000016832	ENSSMAG00000031578	ENSSMAG00000029553	ENSSMAG00000036972	ENSSMAG00000018194	ENSSMAG00000028716	ENSSMAG00000012000	ENSSMAG00000031464	ENSSMAG00000032217	ENSSMAG00000034985
Anabantaria	ANCESTRAL SPECIES	54																ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01030000235398	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000027482	ENSMAMG00000001377	ENSMAMG00000001333	stxbp6l (ENSMAMG00000001318)	ddhd1b (ENSMAMG00000001293)	cgrrf1 (ENSMAMG00000001285)	psmc6 (ENSMAMG00000001226)	ENSMAMG00000001192	ENSMAMG00000028609	ENSMAMG00000001146	ENSMAMG00000001102	ENSMAMG00000001055	ENSMAMG00000001023	ENSMAMG00000000955	ENSMAMG00000000946	ENSMAMG00000000859 ##22	ENSMAMG00000000840	ENSMAMG00000000795	gja1b (ENSMAMG00000000781)	hsf2 (ENSMAMG00000000759)	ENSMAMG00000000742	ENSMAMG00000000713	ENSMAMG00000000672	ENSMAMG00000000648
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000164440	ENSGT00390000002768.b	ENSGT01010000222287.B.b.a.a.b.a	ENSGT00950000183034.C.a.a	ENSGT01030000234513.A.a.b	ENSGT00390000011674	ENSGT00550000075141	ENSGT00940000160597	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00390000003365.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01030000235398	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000160169	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b
Siamese fighting fish	MODERN SPECIES	13	zgc:112001 (ENSBSLG00000010922)	ENSBSLG00000010933	HTR1E (ENSBSLG00000010936)	znf292b (ENSBSLG00000010949)	gjb7 (ENSBSLG00000010983)	smim8 (ENSBSLG00000010991)	ddx51 (ENSBSLG00000011019)	ENSBSLG00000011584	rad51 (ENSBSLG00000011774)	rmdn3 (ENSBSLG00000011954)	si:ch211-241j12.3 (ENSBSLG00000012025)	cfap206 (ENSBSLG00000012081)	PM20D2 (ENSBSLG00000012123)	gopc (ENSBSLG00000012164)	ENSBSLG00000012222	mcm9 (ENSBSLG00000012249) ##22	ENSBSLG00000012291	ENSBSLG00000012300	gja1b (ENSBSLG00000012310)	hsf2 (ENSBSLG00000013060)	ENSBSLG00000013146	ENSBSLG00000013228	ENSBSLG00000013259	serinc1 (ENSBSLG00000013320)	SLC35F1 (ENSBSLG00000013583)	nus1 (ENSBSLG00000013610)	rad51b (ENSBSLG00000013624)	zfp36l1b (ENSBSLG00000013648)	ptger2b (ENSBSLG00000013654)	psmc6 (ENSBSLG00000013662)	cgrrf1 (ENSBSLG00000013742)
Climbing perch	MODERN SPECIES	15	ENSATEG00000013361	ENSATEG00000013372	HTR1E (ENSATEG00000013376)	znf292b (ENSATEG00000028526)	GJB7 (ENSATEG00000013456)	smim8 (ENSATEG00000013494)	ENSATEG00000013470	ENSATEG00000013512	ENSATEG00000013639	ENSATEG00000013656	ENSATEG00000013675	ENSATEG00000013747	ENSATEG00000013786	ENSATEG00000013799	ENSATEG00000013843	ENSATEG00000013865 ##22	ENSATEG00000013887	ENSATEG00000013919	ENSATEG00000013927	hsf2 (ENSATEG00000013939)	ENSATEG00000013977	ENSATEG00000013993	ENSATEG00000014012	rad51b (ENSATEG00000014065)	zfp36l1b (ENSATEG00000014086)	ptger2b (ENSATEG00000014093)	psmc6 (ENSATEG00000014099)	cgrrf1 (ENSATEG00000026756)	ddhd1b (ENSATEG00000014163)	stxbp6l (ENSATEG00000014194)	gjd2b (ENSATEG00000014213)
Eupercaria	ANCESTRAL SPECIES	42	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT01050000244902.b.c.a.b	ENSGT00940000155076.a.c	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT01050000244824.E ##22
Tetraodontidae	ANCESTRAL SPECIES	332															ENSGT00940000156535	ENSGT01050000244824.E ##22
Fugu	MODERN SPECIES	7	HS3ST5 (ENSTRUG00000006751)	ENSTRUG00000027983	HDAC2 (ENSTRUG00000006770)	marcksa (ENSTRUG00000007040)	ENSTRUG00000005418	dnal1 (ENSTRUG00000024991)	tube1 (ENSTRUG00000005085)	ccn6 (ENSTRUG00000031337)	fynb (ENSTRUG00000003538)	ENSTRUG00000028393	REV3L (ENSTRUG00000002617)	mfsd4b (ENSTRUG00000002351)	ufl1 (ENSTRUG00000001855)	ENSTRUG00000027480	gopc (ENSTRUG00000026145)	mcm9 (ENSTRUG00000026460) ##22	ENSTRUG00000032518	irf2 (ENSTRUG00000001842)	ENSTRUG00000020931	ENSTRUG00000027941	ENSTRUG00000021964
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	wt1a (ENSTNIG00000007794)	snrkb (ENSTNIG00000007793)	ano10b (ENSTNIG00000007792)	fa2h (ENSTNIG00000005748)	ENSTNIG00000005749	ENSTNIG00000003879	ZNF319 (ENSTNIG00000003880)	usb1 (ENSTNIG00000000626)	pla2g15 (ENSTNIG00000003881)	ENSTNIG00000003093	ENSTNIG00000003094	fech (ENSTNIG00000007258)	PRKDC (ENSTNIG00000007257)	gopc (ENSTNIG00000007256)	ENSTNIG00000007255 ##22	ENSTNIG00000019187 ##22	srp9 (ENSTNIG00000007254)	enah (ENSTNIG00000007253)	ankrd6b (ENSTNIG00000007252)	LYRM2 (ENSTNIG00000001699)	epha7 (ENSTNIG00000007251)	map3k7 (ENSTNIG00000005581)	MDN1 (ENSTNIG00000006221)	ENSTNIG00000000616	ARRB2 (ENSTNIG00000004064)	mtmr1a (ENSTNIG00000005124)	ENSTNIG00000005125	ENSTNIG00000005947	ENSTNIG00000005739	ENSTNIG00000019552	rwdd (ENSTNIG00000005403)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000007795	wt1a (ENSTNIG00000007794)	snrkb (ENSTNIG00000007793)	ano10b (ENSTNIG00000007792)	fa2h (ENSTNIG00000005748)	ENSTNIG00000005749	ENSTNIG00000003879	ZNF319 (ENSTNIG00000003880)	usb1 (ENSTNIG00000000626)	pla2g15 (ENSTNIG00000003881)	ENSTNIG00000003093	ENSTNIG00000003094	fech (ENSTNIG00000007258)	PRKDC (ENSTNIG00000007257)	gopc (ENSTNIG00000007256)	ENSTNIG00000007255 ##22	ENSTNIG00000019187 ##22	srp9 (ENSTNIG00000007254)	enah (ENSTNIG00000007253)	ankrd6b (ENSTNIG00000007252)	LYRM2 (ENSTNIG00000001699)	epha7 (ENSTNIG00000007251)	map3k7 (ENSTNIG00000005581)	MDN1 (ENSTNIG00000006221)	ENSTNIG00000000616	ARRB2 (ENSTNIG00000004064)	mtmr1a (ENSTNIG00000005124)	ENSTNIG00000005125	ENSTNIG00000005947	ENSTNIG00000005739	ENSTNIG00000019552
Eupecaria_A	ANCESTRAL SPECIES	39	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT01050000244902.b.c.a.b	ENSGT00940000155076.a.c	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT01050000244824.E ##22
Ballan wrasse	MODERN SPECIES	276				gjb9b (ENSLBEG00000002710)	pef1 (ENSLBEG00000002649)	smim12 (ENSLBEG00000002612)	gja4 (ENSLBEG00000002604)	gja1b (ENSLBEG00000002598)	ENSLBEG00000002573	ENSLBEG00000002563	ENSLBEG00000002357	ENSLBEG00000002278	ENSLBEG00000002222	gopc (ENSLBEG00000002170)	ENSLBEG00000002109	mcm9 (ENSLBEG00000002081) ##22	ENSLBEG00000002055	ENSLBEG00000001927	ENSLBEG00000001881	ENSLBEG00000001756	ENSLBEG00000001713	ENSLBEG00000001695	ENSLBEG00000001672
Eupecaria_B	ANCESTRAL SPECIES	38	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT01050000244902.b.c.a.b	ENSGT00940000155076.a.c	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT01050000244824.E ##22
Perciformes	ANCESTRAL SPECIES	59														ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT00940000155076.a.c	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b
Perciformes_a	ANCESTRAL SPECIES	32	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157	ENSGT00940000160597	ENSGT00550000075141	ENSGT00390000011674	ENSGT01030000234513.A.a.b	ENSGT00950000183034.C.a.a	ENSGT01010000222287.B.b.a.a.b.a	ENSGT00940000166171	ENSGT00940000164440	ENSGT00940000156417.g.b	ENSGT00700000106116.a.a	ENSGT01030000234534.A.c.b.b.b	ENSGT00620000087993.a.a	ENSGT00940000156535	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b
Pike perch	MODERN SPECIES	190								ENSSLUG00000015523	ENSSLUG00000015526	olfcb1 (ENSSLUG00000015535)	ENSSLUG00000015546	zgc:112001 (ENSSLUG00000015552)	LRFN2 (ENSSLUG00000015561)	ENSSLUG00000015524	gopc (ENSSLUG00000015537)	mcm9 (ENSSLUG00000015563) ##22	ENSSLUG00000015610	ENSSLUG00000015618	zfp36l1b (ENSSLUG00000015623)	psmc6 (ENSSLUG00000015643)	cgrrf1 (ENSSLUG00000015695)	ddhd1b (ENSSLUG00000015703)
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000004172	ENSCGOG00000004175	rad51 (ENSCGOG00000004192)	ENSCGOG00000004197	ddx51 (ENSCGOG00000004204)	smim8 (ENSCGOG00000004219)	znf292b (ENSCGOG00000004234)	HTR1E (ENSCGOG00000004241)	olfcb1 (ENSCGOG00000004249)	zgc:112001 (ENSCGOG00000004272)	LRFN2 (ENSCGOG00000004278)	C14orf132 (ENSCGOG00000004280)	BDKRB2 (ENSCGOG00000004337)	ENSCGOG00000004340	gopc (ENSCGOG00000004349)	mcm9 (ENSCGOG00000004369) ##22	rpl7l1 (ENSCGOG00000004550)	ENSCGOG00000004557	ephx1 (ENSCGOG00000004562)	srp9 (ENSCGOG00000004643)	ENSCGOG00000004658	enah (ENSCGOG00000004663)	lbr (ENSCGOG00000004668)	gja1b (ENSCGOG00000004743)	hsf2 (ENSCGOG00000004751)	serinc1 (ENSCGOG00000004758)	SLC35F1 (ENSCGOG00000004818)	nus1 (ENSCGOG00000004823)	katna1 (ENSCGOG00000004840)	ENSCGOG00000005025	ginm1 (ENSCGOG00000005027)
Cottioidei	ANCESTRAL SPECIES	28	ENSGT00940000156510.g	ENSGT00390000007020	ENSGT00940000167343	ENSGT00390000010423	ENSGT00940000155786.k.b	ENSGT00940000163359.a.a	ENSGT00940000156927	ENSGT00940000159071.y.a	ENSGT00940000156384.o	ENSGT00940000167479	ENSGT00940000158032	ENSGT00390000016516	ENSGT00950000183117.b	ENSGT00940000155566	ENSGT00940000156535	ENSGT01050000244824.E ##22	ENSGT00940000155076.a.c	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b
Lumpfish	MODERN SPECIES	16	ENSCLMG00005006107	ENSCLMG00005006108	nrxn3b (ENSCLMG00005006109)	snw1 (ENSCLMG00005006183)	sptlc2b (ENSCLMG00005006237)	ism2b (ENSCLMG00005007713)	cyp46a1.4 (ENSCLMG00005007718)	ccdc85cb (ENSCLMG00005007945)	CCNK (ENSCLMG00005007947)	ENSCLMG00005007951	agbl5 (ENSCLMG00005007954)	ost4 (ENSCLMG00005007956)	selenoi (ENSCLMG00005007957)	tbx18 (ENSCLMG00005007958)	gopc (ENSCLMG00005007960)	mcm9 (ENSCLMG00005007961) ##22	zfp36l1b (ENSCLMG00005007963)	psmc6 (ENSCLMG00005007964)	cgrrf1 (ENSCLMG00005007980)	ddhd1b (ENSCLMG00005007981)	ENSCLMG00005008024	meis2b (ENSCLMG00005008025)	ENSCLMG00005008100	TAAR1 (ENSCLMG00005008101)	ENSCLMG00005008106	tnfrsf21 (ENSCLMG00005008107)	cd2ap (ENSCLMG00005008108)	opn5 (ENSCLMG00005008110)	ptchd4 (ENSCLMG00005008112)	ENSCLMG00005008113	ENSCLMG00005008114
Stickleback	MODERN SPECIES	18	ism2b (ENSGACG00000005405)	cyp46a1.4 (ENSGACG00000005410)	CCNK (ENSGACG00000005517)	ENSGACG00000005537	agbl5 (ENSGACG00000005542)	selenoi (ENSGACG00000005556)	tbx18 (ENSGACG00000005602)	meis2b (ENSGACG00000005610)	gjd2b (ENSGACG00000005651)	stxbp6l (ENSGACG00000005653)	ddhd1b (ENSGACG00000005668)	cgrrf1 (ENSGACG00000005681)	psmc6 (ENSGACG00000005694)	ENSGACG00000005795	gopc (ENSGACG00000005799)	mcm9 (ENSGACG00000005828) ##22	rfx6 (ENSGACG00000005840)	vgll2a (ENSGACG00000005852)	plg (ENSGACG00000005858)	slc22a2 (ENSGACG00000005916)	slc22a2 (ENSGACG00000005924)	igf2r (ENSGACG00000005960)	ENSGACG00000005977	GPR31 (ENSGACG00000005987)	msraa (ENSGACG00000005989)	ift172 (ENSGACG00000006020)	cad (ENSGACG00000006047)	dnajc5ga (ENSGACG00000006091)	trim54 (ENSGACG00000006098)	uts1 (ENSGACG00000006113)	mpv17 (ENSGACG00000006119)
Eupecaria_C	ANCESTRAL SPECIES	59														ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	74														ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000155076.a.c	ENSGT01050000244902.b.c.a.b	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT01090000260005.a.b.a.b.a.a.a	ENSGT00940000155643.c.b.b
European seabass	MODERN SPECIES	18												ENSDLAG00005018558	ENSDLAG00005027517	ENSDLAG00005004608	ENSDLAG00005019845	ENSDLAG00005004585 ##22	ENSDLAG00005031447	ENSDLAG00005034023	gja1b (ENSDLAG00005035019)	ENSDLAG00005013605	ENSDLAG00005007994	hsf2 (ENSDLAG00005005036)	ENSDLAG00005027837	ENSDLAG00005027205	ENSDLAG00005020273	ENSDLAG00005020289	ENSDLAG00005028964	ENSDLAG00005023904	zfp36l1b (ENSDLAG00005028400)	ENSDLAG00005030521	ptger2b (ENSDLAG00005020304)
Large yellow croaker	MODERN SPECIES	482	ENSLCRG00005003547	slc5a6a (ENSLCRG00005003545)	rpl7l1 (ENSLCRG00005003541)	ENSLCRG00005003540	CNIH3 (ENSLCRG00005003538)	ENSLCRG00005003537	ENSLCRG00005003536	ENSLCRG00005003535	C14orf132 (ENSLCRG00005003534)	ENSLCRG00005003533	meis2b (ENSLCRG00005003529)	ENSLCRG00005003525	gjd2b (ENSLCRG00005003523)	ENSLCRG00005003522	ENSLCRG00005003520	mcm9 (ENSLCRG00005003498) ##22	slc16a10 (ENSLCRG00005003496)	rpf2 (ENSLCRG00005003483)	amd1 (ENSLCRG00005003481)	CDK19 (ENSLCRG00005003464)	tab2 (ENSLCRG00005003452)	ENSLCRG00005003450	ppil4 (ENSLCRG00005003446)	GINM1 (ENSLCRG00005003444)	katna1 (ENSLCRG00005003414)	ENSLCRG00005002704	enah (ENSLCRG00005002659)	srp9 (ENSLCRG00005002648)	ENSLCRG00005002645	ephx1 (ENSLCRG00005002637)	ENSLCRG00005002631
Gilthead seabream	MODERN SPECIES	14	ccn6 (ENSSAUG00010006415)	ENSSAUG00010006417	fynb (ENSSAUG00010006431)	LRFN2 (ENSSAUG00010008147)	ENSSAUG00010008148	ENSSAUG00010008150	ENSSAUG00010008151	meis2b (ENSSAUG00010008154)	gjd2b (ENSSAUG00010008155)	stxbp6l (ENSSAUG00010008157)	ddhd1b (ENSSAUG00010008159)	cgrrf1 (ENSSAUG00010008282)	kcnk10a (ENSSAUG00010008287)	gopc (ENSSAUG00010008293)	ENSSAUG00010008297	mcm9 (ENSSAUG00010008303) ##22	ENSSAUG00010008306	ENSSAUG00010002673	gja1b (ENSSAUG00010002693)	SLC35F1 (ENSSAUG00010002705)	nus1 (ENSSAUG00010002710)	serinc1 (ENSSAUG00010002734)	hsf2 (ENSSAUG00010002763)	psmc6 (ENSSAUG00010002779)	zfp36l1b (ENSSAUG00010003094)	tnfrsf21 (ENSSAUG00010003095)	cd2ap (ENSSAUG00010003110)	opn5 (ENSSAUG00010003132)	ptchd4 (ENSSAUG00010003135)	ENSSAUG00010003149	ENSSAUG00010003153
Ovalentaria	ANCESTRAL SPECIES	39													ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000157785	ENSGT00940000158228.a	ENSGT00940000167916	ENSGT01090000260070.D.a	ENSGT01030000235133.a.a	ENSGT00620000088063	ENSGT00550000074802	ENSGT00390000002957	ENSGT00940000155887.b	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000011776	ENSGT00940000158213	ENSGT00940000158473	ENSGT00940000155107.a.b	ENSGT00940000156283	ENSGT00390000008373	ENSGT00940000156638	ENSGT00940000156147.c	ENSGT00940000155643.c.b.b	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT00390000003223	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000161228.g	ENSGT00940000154603.B.l.j.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k.u
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00390000011776	ENSGT00940000158213	ENSGT00940000158473	ENSGT00940000155107.a.b	ENSGT00940000156283	ENSGT00390000008373	ENSGT00940000156638	ENSGT00940000156147.c	ENSGT00940000155643.c.b.b	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT00390000003223	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00950000183111.a.b	ENSGT00940000161541	ENSGT00940000154603.B.l.j.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.h	ENSGT00940000161228.h	ENSGT00940000154603.B.l.j.a.b	ENSGT00940000154603.B.l.j.b.b	ENSGT00940000154603.B.l.j.a.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.g	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b
Indian medaka	MODERN SPECIES	22	CDK19 (ENSOMEG00000011607)	tab2 (ENSOMEG00000011644)	ENSOMEG00000011669	ppil4 (ENSOMEG00000011713)	GINM1 (ENSOMEG00000011747)	katna1 (ENSOMEG00000011781)	kcnk10a (ENSOMEG00000011811)	meis2b (ENSOMEG00000011841)	stxbp6l (ENSOMEG00000011862)	ddhd1b (ENSOMEG00000011958)	cgrrf1 (ENSOMEG00000011991)	psmc6 (ENSOMEG00000012055)	nus1 (ENSOMEG00000012078)	ENSOMEG00000012163	ENSOMEG00000012192	ENSOMEG00000000305 ##22	ENSOMEG00000012243	gja1b (ENSOMEG00000012249)	ENSOMEG00000012255	hsf2 (ENSOMEG00000012283)	serinc1 (ENSOMEG00000012316)	mep1a.2 (ENSOMEG00000012388)	ENSOMEG00000012416	ENSOMEG00000012425	ENSOMEG00000012434	ENSOMEG00000012449	ENSOMEG00000012471	ENSOMEG00000012487	ENSOMEG00000012543	ENSOMEG00000000320	ENSOMEG00000012584
Javanese ricefish	MODERN SPECIES	16	amd1 (ENSOJAG00000023497)	CDK19 (ENSOJAG00000023507)	tab2 (ENSOJAG00000023514)	ENSOJAG00000023517	ppil4 (ENSOJAG00000003711)	GINM1 (ENSOJAG00000004256)	katna1 (ENSOJAG00000004270)	kcnk10a (ENSOJAG00000004356)	meis2b (ENSOJAG00000004418)	stxbp6l (ENSOJAG00000004682)	ddhd1b (ENSOJAG00000004708)	cgrrf1 (ENSOJAG00000004772)	psmc6 (ENSOJAG00000004784)	nus1 (ENSOJAG00000004885)	ENSOJAG00000004897	ENSOJAG00000004948 ##22	ENSOJAG00000004977	gja13.2 (ENSOJAG00000004996)	gja1b (ENSOJAG00000005004)	hsf2 (ENSOJAG00000005028)	serinc1 (ENSOJAG00000005111)	mep1a.2 (ENSOJAG00000005488)	ENSOJAG00000005687	ENSOJAG00000005735	ENSOJAG00000005815	ENSOJAG00000005849	ENSOJAG00000006043	ENSOJAG00000006089	ENSOJAG00000006111	TAAR1 (ENSOJAG00000006138)	TAAR1 (ENSOJAG00000006158)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00390000011776	ENSGT00940000158213	ENSGT00940000158473	ENSGT00940000155107.a.b	ENSGT00940000156283	ENSGT00390000008373	ENSGT00940000156638	ENSGT00940000156147.c	ENSGT00940000155643.c.b.b	ENSGT00940000156499.a.b	ENSGT00940000156065.b	ENSGT00390000004542	ENSGT01020000230346.A.d	ENSGT00390000003223	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00950000183111.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.j.a	ENSGT00940000154603.B.l.j.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.b.i	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.b.a	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.b	ENSGT00950000182934.a.b.h.b.d.c.a.a.a.a.a.a.a	ENSGT00940000154603.B.k.u	ENSGT00940000154603.B.k.v
Chinese medaka	MODERN SPECIES	1302	CDK19 (ENSOSIG00000012054)	amd1 (ENSOSIG00000012076)	tab2 (ENSOSIG00000012081)	ENSOSIG00000012084	ppil4 (ENSOSIG00000012091)	ginm1 (ENSOSIG00000012115)	katna1 (ENSOSIG00000012121)	kcnk10a (ENSOSIG00000012125)	meis2b (ENSOSIG00000012132)	stxbp6l (ENSOSIG00000012294)	ddhd1b (ENSOSIG00000012330)	cgrrf1 (ENSOSIG00000013128)	psmc6 (ENSOSIG00000013133)	nus1 (ENSOSIG00000013139)	ENSOSIG00000013141	mcm9 (ENSOSIG00000013142) ##22	ENSOSIG00000013144	ENSOSIG00000013145	gja1b (ENSOSIG00000013146)	ENSOSIG00000013147	hsf2 (ENSOSIG00000013148)	serinc1 (ENSOSIG00000013151)	mep1a.2 (ENSOSIG00000013498)	ENSOSIG00000013502	ENSOSIG00000013503	ENSOSIG00000013505
Japanese Medaka HdrR	MODERN SPECIES	16	amd1 (ENSORLG00000015204)	CDK19 (ENSORLG00000015247)	tab2 (ENSORLG00000015273)	ENSORLG00000015280	ppil4 (ENSORLG00000015310)	ginm1 (ENSORLG00000015315)	katna1 (ENSORLG00000015356)	kcnk10a (ENSORLG00000015381)	meis2b (ENSORLG00000024109)	stxbp6l (ENSORLG00000015400)	ddhd1b (ENSORLG00000015417)	cgrrf1 (ENSORLG00000015421)	psmc6 (ENSORLG00000015435)	nus1 (ENSORLG00000015443)	ENSORLG00000015455	mcm9 (ENSORLG00000015466) ##22	ENSORLG00000022817	gja13.2 (ENSORLG00000015472)	gja1b (ENSORLG00000015485)	hsf2 (ENSORLG00000015498)	serinc1 (ENSORLG00000015533)	mep1a.2 (ENSORLG00000015582)	ENSORLG00000015590	ENSORLG00000015595	ENSORLG00000022096	ENSORLG00000022626	ENSORLG00000024720	ENSORLG00000026588	ENSORLG00000028309	ENSORLG00000024477	ENSORLG00000022078
Cyprinodontiformes	ANCESTRAL SPECIES	54	ENSGT00940000155676	ENSGT00940000167164	ENSGT00940000157785	ENSGT00940000158228.a	ENSGT01090000260070.D.a	ENSGT00620000088063	ENSGT00550000074802	ENSGT00390000002957	ENSGT00940000155887.b	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000003223	ENSGT00390000004542	ENSGT01020000230346.A.d
Aplocheiloidei	ANCESTRAL SPECIES	159						ENSGT00940000157785	ENSGT00940000158228.a	ENSGT01090000260070.D.a	ENSGT00620000088063	ENSGT00550000074802	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000158591.g.a	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT00390000004542	ENSGT01020000230346.A.d
Mangrove rivulus	MODERN SPECIES	182						ufl1 (ENSKMAG00000004199)	ENSKMAG00000004182	GPR63 (ENSKMAG00000004155)	ENSKMAG00000004145	ENSKMAG00000004134	dse (ENSKMAG00000004110)	COL10A1 (ENSKMAG00000004096)	nt5dc1 (ENSKMAG00000004061)	gopc (ENSKMAG00000004021)	ENSKMAG00000003993	mcm9 (ENSKMAG00000003963) ##22	ENSKMAG00000003945	ENSKMAG00000003928	gja1b (ENSKMAG00000003917)	ENSKMAG00000003903	ENSKMAG00000003890	hsf2 (ENSKMAG00000003877)	cgrrf1 (ENSKMAG00000003867)	psmc6 (ENSKMAG00000003814)
Turquoise killifish	MODERN SPECIES	1					MAP3K7 (ENSNFUG00015017718)	BACH2B (ENSNFUG00015017802)	GJA10 (ENSNFUG00015017806)	ENSNFUG00015017807	ENSNFUG00015017815	ENSNFUG00015017849	ENSNFUG00015017852	GABRR2 (ENSNFUG00015017856)	ube2j1 (ENSNFUG00015017868)	NUS1 (ENSNFUG00015017876)	gabrr1 (ENSNFUG00015017993)	mcm9 (ENSNFUG00015018072) ##22	ENSNFUG00015018094	ENSNFUG00015018096	gja1b (ENSNFUG00015018100)	rad51 (ENSNFUG00015018109)	rmdn3 (ENSNFUG00015018159)	ENSNFUG00015018194	cfap206 (ENSNFUG00015018202)	ENSNFUG00015018228	gopc (ENSNFUG00015014105)	ENSNFUG00015014160	zgc:112001 (ENSNFUG00015014164)	znf292b (ENSNFUG00015014184)	ENSNFUG00015014219	ENSNFUG00015015234	nbas (ENSNFUG00015015634)
Cyprinodontoidei	ANCESTRAL SPECIES	95													ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000003223	ENSGT00390000004542	ENSGT01020000230346.A.d
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00940000158591.g.a	ENSGT00390000011674	ENSGT00950000183034.C.a.a	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00390000003223	ENSGT01030000234623.a.a.a.a.b	ENSGT01090000260070.A	ENSGT01030000235398	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT00390000002768.b	ENSGT00940000156987	ENSGT00940000158991	ENSGT00940000177477	ENSGT00940000155725	ENSGT00730000111419.a	ENSGT00940000159970	ENSGT00940000165424.b	ENSGT00940000155723	ENSGT00940000160119	ENSGT00940000164843.a	ENSGT00940000155462.`b.b	ENSGT00940000166133	ENSGT00940000164609.a	ENSGT00940000156226
Platyfish	MODERN SPECIES	6	si:ch211-241j12.3 (ENSXMAG00000028387)	cfap206 (ENSXMAG00000023168)	gabrr1 (ENSXMAG00000005354)	smim8 (ENSXMAG00000005352)	ENSXMAG00000021701	ENSXMAG00000023794	psmc6 (ENSXMAG00000005307)	cgrrf1 (ENSXMAG00000005298)	nus1 (ENSXMAG00000005293)	serinc1 (ENSXMAG00000005270)	gja1b (ENSXMAG00000005269)	ENSXMAG00000026554	gopc (ENSXMAG00000005257)	ENSXMAG00000005255	ENSXMAG00000022119	ENSXMAG00000021508 ##22	ENSXMAG00000021537	FRK (ENSXMAG00000005239)	ENSXMAG00000022132	HS3ST5 (ENSXMAG00000005236)	HDAC2 (ENSXMAG00000005199)	marcksa (ENSXMAG00000005197)	LAMA4 (ENSXMAG00000005194)	tube1 (ENSXMAG00000005172)	ccn6 (ENSXMAG00000027662)	ENSXMAG00000005128	fynb (ENSXMAG00000005094)	ENSXMAG00000023818	ENSXMAG00000005091	REV3L (ENSXMAG00000022599)	mfsd4b (ENSXMAG00000000455)
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000156652	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00940000158591.g.a	ENSGT00390000011674	ENSGT00950000183034.C.a.a	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00390000003223	ENSGT01030000234623.a.a.a.a.b	ENSGT01090000260070.A	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT00390000002768.b	ENSGT00940000156987	ENSGT00940000158991	ENSGT00940000177477	ENSGT00940000155725	ENSGT00730000111419.a	ENSGT00940000165424.b	ENSGT00940000155723	ENSGT00940000160119	ENSGT00940000164843.a	ENSGT00940000155462.`b.b	ENSGT00940000166133	ENSGT00940000164609.a	ENSGT00940000156226	ENSGT00530000063320.B
NAME_6	ANCESTRAL SPECIES	183	ENSGT00940000156652	ENSGT00940000156157	ENSGT00950000182992.a.b.a.b	ENSGT00940000166728	ENSGT00390000016036	ENSGT00940000158591.g.a	ENSGT00390000011674	ENSGT00950000183034.C.a.a	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00390000003223	ENSGT01030000234623.a.a.a.a.b	ENSGT01090000260070.A	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT00390000002768.b	ENSGT00940000156987	ENSGT00940000158991	ENSGT00940000177477	ENSGT00940000155725	ENSGT00730000111419.a
Sailfin molly	MODERN SPECIES	114		rad51 (ENSPLAG00000018488)	rmdn3 (ENSPLAG00000018501)	si:ch211-241j12.3 (ENSPLAG00000018560)	cfap206 (ENSPLAG00000018705)	GABRR1 (ENSPLAG00000018744)	smim8 (ENSPLAG00000018755)	znf292b (ENSPLAG00000018787)	psmc6 (ENSPLAG00000018821)	cgrrf1 (ENSPLAG00000018830)	nus1 (ENSPLAG00000018836)	serinc1 (ENSPLAG00000018866)	gja1b (ENSPLAG00000018891)	gopc (ENSPLAG00000018925)	ENSPLAG00000018933	mcm9 (ENSPLAG00000018959) ##22	FRK (ENSPLAG00000018970)	HS3ST5 (ENSPLAG00000018977)	ENSPLAG00000018988	HDAC2 (ENSPLAG00000019034)	marcksa (ENSPLAG00000019046)	yme1l1b (ENSPLAG00000019108)	rab18b (ENSPLAG00000019136)	mkxb (ENSPLAG00000019153)	ENSPLAG00000019207	ENSPLAG00000019219
Amazon molly	MODERN SPECIES	514	ube2j1 (ENSPFOG00000014265)	rad51 (ENSPFOG00000014300)	rmdn3 (ENSPFOG00000014339)	ENSPFOG00000014416	cfap206 (ENSPFOG00000014453)	GABRR1 (ENSPFOG00000014517)	smim8 (ENSPFOG00000014530)	znf292b (ENSPFOG00000014543)	psmc6 (ENSPFOG00000014622)	cgrrf1 (ENSPFOG00000014706)	nus1 (ENSPFOG00000014815)	serinc1 (ENSPFOG00000014938)	gja1b (ENSPFOG00000020917)	gopc (ENSPFOG00000015046)	ENSPFOG00000015130	mcm9 (ENSPFOG00000015210) ##22	ENSPFOG00000020918	FRK (ENSPFOG00000015256)	HS3ST5 (ENSPFOG00000015320)	HDAC2 (ENSPFOG00000015383)	marcksa (ENSPFOG00000015557)
Guppy	MODERN SPECIES	452	ube2j1 (ENSPREG00000001225)	rad51 (ENSPREG00000001194)	rmdn3 (ENSPREG00000001180)	si:ch211-241j12.3 (ENSPREG00000001129)	cfap206 (ENSPREG00000001097)	GABRR1 (ENSPREG00000000927)	smim8 (ENSPREG00000000879)	znf292b (ENSPREG00000000824)	psmc6 (ENSPREG00000000744)	cgrrf1 (ENSPREG00000000724)	nus1 (ENSPREG00000000700)	serinc1 (ENSPREG00000000665)	gja1b (ENSPREG00000000656)	gopc (ENSPREG00000000630)	ENSPREG00000000626	mcm9 (ENSPREG00000021053) ##22	ENSPREG00000021046	ENSPREG00000021029	HS3ST5 (ENSPREG00000021019)	HDAC2 (ENSPREG00000020961)	marcksa (ENSPREG00000020939)	ENSPREG00000020833	tube1 (ENSPREG00000020777)	ccn6 (ENSPREG00000020750)	ENSPREG00000020734	fynb (ENSPREG00000020673)	ENSPREG00000020651	ENSPREG00000020622	REV3L (ENSPREG00000020577)	mfsd4b (ENSPREG00000020558)	slc16a10 (ENSPREG00000020544)
NAME_4	ANCESTRAL SPECIES	295													ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000003223.f	ENSGT00390000004542	ENSGT01020000230346.A.d
Sheepshead minnow	MODERN SPECIES	617					gabrr1 (ENSCVAG00000017255)	cfap206 (ENSCVAG00000017374)	ENSCVAG00000017417	rmdn3 (ENSCVAG00000017436)	rad51 (ENSCVAG00000017477)	ENSCVAG00000017496	ddx51 (ENSCVAG00000017562)	znf292b (ENSCVAG00000017591)	gopc (ENSCVAG00000017641)	ENSCVAG00000017665	ENSCVAG00000017676	ENSCVAG00000000644 ##22	ENSCVAG00000017706	ENSCVAG00000017734	gja1b (ENSCVAG00000017738)	ENSCVAG00000017744	hsf2 (ENSCVAG00000017751)	serinc1 (ENSCVAG00000017793)	nus1 (ENSCVAG00000017805)	cgrrf1 (ENSCVAG00000017810)	psmc6 (ENSCVAG00000017844)
Mummichog	MODERN SPECIES	780																mcm9 (ENSFHEG00000013168) ##22	gja1b (ENSFHEG00000013171)
Ovalentaria_B	ANCESTRAL SPECIES	89													ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b
Pomacentridae	ANCESTRAL SPECIES	157	ENSGT00940000175432	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c	ENSGT00940000157818	ENSGT01070000253766.C.o.a	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000166622	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT00940000169801	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00940000165962	ENSGT00940000175432	ENSGT00940000161092	ENSGT00450000040279	ENSGT00390000014037.c	ENSGT00940000157818	ENSGT01070000253766.C.o.a	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000166622	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00940000155906	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT01030000234623.a.a.a.a.b
Amphiprion	ANCESTRAL SPECIES	79	ENSGT00940000157818	ENSGT00390000014037.c	ENSGT00450000040279	ENSGT00940000161092	ENSGT00940000175432	ENSGT00940000165962	ENSGT00940000156535	ENSGT00940000171557	ENSGT00390000018318	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000166622	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b.a.b.d	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00940000155906	ENSGT00390000003223	ENSGT00390000015655.b	ENSGT01030000234623.a.a.a.a.b
Orange clownfish	MODERN SPECIES	2	pinx1 (ENSAPEG00000008823)	sox7 (ENSAPEG00000008893)	ENSAPEG00000008933	ENSAPEG00000008939	gopc (ENSAPEG00000008968)	ENSAPEG00000009023	rps12 (ENSAPEG00000009104)	ENSAPEG00000009172	sh3bgrl2 (ENSAPEG00000009160)	ENSAPEG00000009232	ENSAPEG00000009709	ENSAPEG00000009726	gja1b (ENSAPEG00000009745)	ENSAPEG00000009754	ENSAPEG00000009787	mcm9 (ENSAPEG00000009808) ##22	ENSAPEG00000009829	hsf2 (ENSAPEG00000009898)	ENSAPEG00000009964	nus1 (ENSAPEG00000009993)	SLC35F1 (ENSAPEG00000010012)	serinc1 (ENSAPEG00000010038)	serinc1 (ENSAPEG00000010073)	SLC35F1 (ENSAPEG00000010089)	nus1 (ENSAPEG00000010121)	ENSAPEG00000010157	ENSAPEG00000010167
Clown anemonefish	MODERN SPECIES	2993													gja1b (ENSAOCG00000022809)	ENSAOCG00000022814	ENSAOCG00000022822	mcm9 (ENSAOCG00000022837) ##22
Spiny chromis	MODERN SPECIES	1891													gja1b (ENSAPOG00000012520)	ENSAPOG00000012510	ENSAPOG00000012496	ENSAPOG00000012472 ##22
Bicolor damselfish	MODERN SPECIES	1337						xkr6b (ENSSPAG00000014383)	ccm2 (ENSSPAG00000014402)	fam167ab (ENSSPAG00000014437)	ENSSPAG00000014459	sh3bgrl2 (ENSSPAG00000014499)	ENSSPAG00000014527	gja1b (ENSSPAG00000014659)	ENSSPAG00000014664	ENSSPAG00000014684	ENSSPAG00000014698	mcm9 (ENSSPAG00000014704) ##22	ENSSPAG00000014726	ENSSPAG00000014826	SLC35F1 (ENSSPAG00000014832)	nus1 (ENSSPAG00000014855)	serinc1 (ENSSPAG00000014866)	tcf21 (ENSSPAG00000014898)
Cichlidae	ANCESTRAL SPECIES	46	ENSGT00390000001627	ENSGT00950000183001.a.b.a	ENSGT00390000002112	ENSGT00940000167164	ENSGT00940000157785	ENSGT00940000158228.a	ENSGT01090000260070.D.a	ENSGT00620000088063	ENSGT00550000074802	ENSGT00390000002957	ENSGT00940000155887.b	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708	ENSGT00940000153525.i.a	ENSGT00670000099475	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01090000260070.A	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c	ENSGT00390000016036	ENSGT00940000166728	ENSGT00950000182992.a.b.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708	ENSGT00940000153525.i.a	ENSGT00670000099475	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00940000156864.d	ENSGT00940000156652	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01090000260070.A.sb	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000155643.d	ENSGT00940000156147.c	ENSGT00390000016036	ENSGT00940000166728
Haplochromini	ANCESTRAL SPECIES	23	ENSGT00940000158497	ENSGT00940000154471.a.b.a.b.u.b	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708	ENSGT00940000153525.i.a	ENSGT00670000099475	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00940000156864.d	ENSGT00940000156652.m	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01090000260070.A.sb	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000155643.d	ENSGT00940000156147.c	ENSGT00390000016036	ENSGT00940000166728
Haplochromini_A	ANCESTRAL SPECIES	26	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708	ENSGT00940000153525.i.a	ENSGT00670000099475	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00940000156864.d	ENSGT00940000156652.m	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT00940000169801	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244824.E ##22	ENSGT01090000260070.A.sb	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c	ENSGT00390000016036	ENSGT00940000166728	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157
Haplochromini_B	ANCESTRAL SPECIES	29	ENSGT00940000155197	ENSGT00940000154098.a.f	ENSGT00390000008708	ENSGT00940000153525.i.a	ENSGT00670000099475	ENSGT00390000018612.a.b	ENSGT00390000012501	ENSGT00390000014507.a.b	ENSGT00940000157013	ENSGT00940000156864.d	ENSGT00940000156652.m	ENSGT00940000156652.n	ENSGT00940000156535	ENSGT00620000087993.a.a	ENSGT01050000244864.A.a.b.a.a.b	ENSGT01050000244824.E ##22	ENSGT01090000260070.A.sb	ENSGT00940000155906	ENSGT01030000234623.a.a.a.a.b	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT01020000230346.A.d	ENSGT00390000004542	ENSGT00940000156065.b.b	ENSGT00940000156499.a.b	ENSGT00940000155643.c.b.b	ENSGT00940000156147.c	ENSGT00390000016036.e	ENSGT00940000166728	ENSGT00950000182992.a.b.a.b	ENSGT00940000156157
Zebra mbuna	MODERN SPECIES	369																mcm9 (ENSMZEG00005028357) ##22	ENSMZEG00005028355
Eastern happy	MODERN SPECIES	6	tmpoa (ENSACLG00000021671)	slc25a3b (ENSACLG00000021624)	LDHB (ENSACLG00000021613)	ENSACLG00000021597	gys2 (ENSACLG00000021561)	spx (ENSACLG00000021503)	GOLT1B (ENSACLG00000021474)	recql (ENSACLG00000021416)	GABRR2 (ENSACLG00000021366)	ENSACLG00000021352	ube2j1 (ENSACLG00000021335)	ENSACLG00000021326	gopc (ENSACLG00000021267)	ENSACLG00000021210	ENSACLG00000021181	mcm9 (ENSACLG00000021100) ##22	gja1b (ENSACLG00000021055)	hsf2 (ENSACLG00000021028)	serinc1 (ENSACLG00000021000)	SLC35F1 (ENSACLG00000020983)	nus1 (ENSACLG00000020960)	psmc6 (ENSACLG00000020879)	cgrrf1 (ENSACLG00000020856)	ddhd1b (ENSACLG00000020837)	stxbp6l (ENSACLG00000020827)	meis2b (ENSACLG00000020792)	kcnk10a (ENSACLG00000020768)	ENSACLG00000020758	cfap206 (ENSACLG00000020740)	si:ch211-241j12.3 (ENSACLG00000020670)	rmdn3 (ENSACLG00000020576)
Burton s mouthbrooder	MODERN SPECIES	562	large1 (ENSHBUG00000001383)	ENSHBUG00000001377	strap (ENSHBUG00000001375)	tmpoa (ENSHBUG00000001370)	slc25a3b (ENSHBUG00000001368)	LDHB (ENSHBUG00000001364)	ENSHBUG00000001360	gys2 (ENSHBUG00000001356)	spx (ENSHBUG00000001349)	golt1ba (ENSHBUG00000001346)	recql (ENSHBUG00000001341)	GABRR2 (ENSHBUG00000000005)	ube2j1 (ENSHBUG00000001333)	gopc (ENSHBUG00000001330)	ENSHBUG00000001324	mcm9 (ENSHBUG00000001321) ##22	ENSHBUG00000001318	gja1b (ENSHBUG00000001315)	hsf2 (ENSHBUG00000001314)	serinc1 (ENSHBUG00000001310)	SLC35F1 (ENSHBUG00000001308)	nus1 (ENSHBUG00000001303)	psmc6 (ENSHBUG00000001300)	ENSHBUG00000001297	ENSHBUG00000001293	ENSHBUG00000001291
Nile tilapia	MODERN SPECIES	6	ENSONIG00000043077	opn5 (ENSONIG00000011283)	ENSONIG00000038139	slc25a3b (ENSONIG00000001712)	LDHB (ENSONIG00000036287)	kiss2 (ENSONIG00000001704)	gys2 (ENSONIG00000001698)	spx (ENSONIG00000033673)	golt1ba (ENSONIG00000001697)	recql (ENSONIG00000001694)	ENSONIG00000039170	GABRR2 (ENSONIG00000001691)	ube2j1 (ENSONIG00000001689)	gopc (ENSONIG00000001688)	ENSONIG00000001684	mcm9 (ENSONIG00000001681) ##22	ENSONIG00000020813	gja1b (ENSONIG00000020962)	hsf2 (ENSONIG00000001677)	serinc1 (ENSONIG00000001666)	SLC35F1 (ENSONIG00000001664)	nus1 (ENSONIG00000001661)	psmc6 (ENSONIG00000001657)	cgrrf1 (ENSONIG00000027666)	ddhd1b (ENSONIG00000001652)	stxbp6l (ENSONIG00000001648)	meis2b (ENSONIG00000001639)	kcnk10a (ENSONIG00000035124)	cfap206 (ENSONIG00000001635)	si:ch211-241j12.3 (ENSONIG00000001634)	rmdn3 (ENSONIG00000001630)
Pinecone sodierfish	MODERN SPECIES	16	sash1a (ENSMMDG00005015596)	usta (ENSMMDG00005015608)	slc22a16 (ENSMMDG00005015609)	METTL24 (ENSMMDG00005015612)	cdc40 (ENSMMDG00005015616)	WASF1 (ENSMMDG00005015631)	ENSMMDG00005015633	ccdc167 (ENSMMDG00005015635)	GPR6 (ENSMMDG00005015637)	FIG4 (ENSMMDG00005015645)	ENSMMDG00005015762	ENSMMDG00005015765	SLC35F1 (ENSMMDG00005015768)	nus1 (ENSMMDG00005015771)	gopc (ENSMMDG00005015773)	mcm9 (ENSMMDG00005015778) ##22	ENSMMDG00005015785	ENSMMDG00005015787	gja1b (ENSMMDG00005015788)	hsf2 (ENSMMDG00005015789)	serinc1 (ENSMMDG00005015798)	ENSMMDG00005016689	ENSMMDG00005016690	clvs2 (ENSMMDG00005016692)	smpdl3a (ENSMMDG00005016696)	fabp7b (ENSMMDG00005016700)	ENSMMDG00005016713	ENSMMDG00005016721	ENSMMDG00005016920	scara5 (ENSMMDG00005016921)	pbk (ENSMMDG00005016923)
Cod	MODERN SPECIES	13	ENSGMOG00000036625	GRM1 (ENSGMOG00000009695)	rab32a (ENSGMOG00000009690)	ENSGMOG00000023745	ENSGMOG00000032199	stxbp5a (ENSGMOG00000009629)	sash1a (ENSGMOG00000002693)	ENSGMOG00000032637	usta (ENSGMOG00000002673)	slc22a16 (ENSGMOG00000002642)	ENSGMOG00000022238	METTL24 (ENSGMOG00000006480)	ENSGMOG00000000859	WASF1 (ENSGMOG00000030710)	ENSGMOG00000012932	ENSGMOG00000012920 ##22	CEP85L (ENSGMOG00000033381)	PLN (ENSGMOG00000026470)	ENSGMOG00000000424	ENSGMOG00000028937	ENSGMOG00000000441	ENSGMOG00000003664	ENSGMOG00000033709	MAX (ENSGMOG00000003647)	fntb (ENSGMOG00000003623)	rab15 (ENSGMOG00000003610)	sipa1l1 (ENSGMOG00000009585)	rgs6 (ENSGMOG00000009460)	ENSGMOG00000009478	ENSGMOG00000009540	ENSGMOG00000004815
Osteoglossiformes	ANCESTRAL SPECIES	11	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713.n	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01030000235398.a	ENSGT01050000244864.A.a.b.b	ENSGT01030000235398.b	ENSGT01050000244864.A.a.a	ENSGT00940000160053	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.a	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000162581	ENSGT00940000155237	ENSGT00530000063359.A	ENSGT00940000162752	ENSGT00530000063927.a.a
P. kingsleyae	MODERN SPECIES	55	clvs2 (ENSPKIG00000013266)	smpdl3a (ENSPKIG00000013305)	fabp7a (ENSPKIG00000013341)	serinc1 (ENSPKIG00000013362)	hsf2 (ENSPKIG00000013479)	gja1b (ENSPKIG00000013655)	ENSPKIG00000013665	ENSPKIG00000013675	ENSPKIG00000013682	gja11 (ENSPKIG00000013691)	gja13.1 (ENSPKIG00000013704)	hsdl1 (ENSPKIG00000013727)	tbc1d32 (ENSPKIG00000013747)	MAN1A1 (ENSPKIG00000013823)	FAM184A (ENSPKIG00000013915)	mcm9 (ENSPKIG00000014026) ##22	CEP85L (ENSPKIG00000014086)	PLN (ENSPKIG00000014130)	si:dkeyp-114g9.1 (ENSPKIG00000014157)	SLC35F1 (ENSPKIG00000014207)	nus1 (ENSPKIG00000014250)	gopc (ENSPKIG00000014301)	dcbld1 (ENSPKIG00000014358)	vgll2a (ENSPKIG00000014463)	rfx6 (ENSPKIG00000014493)	tdrd15 (ENSPKIG00000014531)	AFDN (ENSPKIG00000014569)	unc93a (ENSPKIG00000014633)	ttll2 (ENSPKIG00000014647)	ENSPKIG00000014672	ENSPKIG00000014697
Spotted gar	MODERN SPECIES	647	smpdl3a (ENSLOCG00000017258)	fabp7a (ENSLOCG00000017257)	ENSLOCG00000017881	serinc1 (ENSLOCG00000017256)	hsf2 (ENSLOCG00000017255)	gja1b (ENSLOCG00000017880)	gja11 (ENSLOCG00000017254)	gja11 (ENSLOCG00000017253)	gja11 (ENSLOCG00000017879)	hsdl1 (ENSLOCG00000017252)	tbc1d32 (ENSLOCG00000017251)	ENSLOCG00000017250	ENSLOCG00000017249	MAN1A1 (ENSLOCG00000017248)	fam184aa (ENSLOCG00000017247)	mcm9 (ENSLOCG00000017246) ##22	CEP85L (ENSLOCG00000017245)	si:dkeyp-114g9.1 (ENSLOCG00000017244)	SLC35F1 (ENSLOCG00000017243)	chrna2a (ENSLOCG00000017242)	ptk2bb (ENSLOCG00000017241)	TRERF1 (ENSLOCG00000017240)	mrps10 (ENSLOCG00000017239)	si:ch211-51e12.7 (ENSLOCG00000017238)	msgn1 (ENSLOCG00000017878)	GEN1 (ENSLOCG00000017237)	si:dkey-119f1.1 (ENSLOCG00000017236)	ENSLOCG00000017235	zgc:194392 (ENSLOCG00000017234)	tmem18 (ENSLOCG00000017233)	alkal2b (ENSLOCG00000017232)
Sarcopterygii	ANCESTRAL SPECIES	16	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT01050000244864.A.a.b	ENSGT00950000185010	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000166171	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000174281	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000166171	ENSGT00940000158416	ENSGT00640000091497.b
Anura	ANCESTRAL SPECIES	8												ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00620000089228	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000166171.b	ENSGT00940000158416	ENSGT00640000091497.b
Frog	MODERN SPECIES	5	sgk1 (ENSXETG00000000124)	aldh8a1 (ENSXETG00000003727)	hbs1l (ENSXETG00000003726)	myb (ENSXETG00000003725)	ahi1 (ENSXETG00000003723)	pde7b (ENSXETG00000017719)	mtfr2 (ENSXETG00000017718)	ENSXETG00000040434	gja1 (ENSXETG00000044635)	ENSXETG00000036917	man1a1 (ENSXETG00000022600)	ENSXETG00000043468	fam184a (ENSXETG00000022616)	ankrd60 (ENSXETG00000037038)	asf1a (ENSXETG00000035875)	mcm9 (ENSXETG00000012868) ##22	ENSXETG00000045413	ENSXETG00000035493	ENSXETG00000041871	cep85l (ENSXETG00000012874)	pln (ENSXETG00000043179)	ENSXETG00000031627	slc35f1 (ENSXETG00000012876)	ENSXETG00000043626	nus1 (ENSXETG00000025077)	gopc (ENSXETG00000012880)	ENSXETG00000012885	dcbld1 (ENSXETG00000008572)	ENSXETG00000041661	ros1 (ENSXETG00000037537)	vgll2 (ENSXETG00000014041)
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000019685	AFDN (ENSLLEG00000019737)	ENSLLEG00000020044	ENSLLEG00000020137	ENSLLEG00000020295	ENSLLEG00000020319	ENSLLEG00000020387	GJA1 (ENSLLEG00000020468)	TBC1D32 (ENSLLEG00000020513)	ENSLLEG00000021408	ENSLLEG00000021768	ENSLLEG00000021788	MAN1A1 (ENSLLEG00000021824)	FAM184A (ENSLLEG00000022102)	ENSLLEG00000022710	ENSLLEG00000022760 ##22	ASF1A (ENSLLEG00000023142)	CEP85L (ENSLLEG00000023205)	PLN (ENSLLEG00000023657)	ENSLLEG00000023675	ENSLLEG00000023702	SLC35F1 (ENSLLEG00000023842)	ENSLLEG00000024050	ENSLLEG00000024073	NUS1 (ENSLLEG00000024346)	ENSLLEG00000024397	ENSLLEG00000024430	GOPC (ENSLLEG00000024482)	DCBLD1 (ENSLLEG00000024706)	ROS1 (ENSLLEG00000025131)	VGLL2 (ENSLLEG00000025695)
Amniota	ANCESTRAL SPECIES	1	ENSGT00660000097134	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Sauria	ANCESTRAL SPECIES	1	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT00940000169801	ENSGT00390000004692.d.b	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797	ENSGT00940000156772
Episquamata	ANCESTRAL SPECIES		ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000156772
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b.w	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000156772
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000003003	ENSPMRG00000002993	TRDN (ENSPMRG00000002933)	CLVS2 (ENSPMRG00000002912)	ENSPMRG00000002899	SMPDL3A (ENSPMRG00000002880)	FABP7 (ENSPMRG00000002861)	ENSPMRG00000002847	SERINC1 (ENSPMRG00000002839)	HSF2 (ENSPMRG00000002813)	GJA1 (ENSPMRG00000006425)	ENSPMRG00000006416	MAN1A1 (ENSPMRG00000006395)	FAM184A (ENSPMRG00000006351)	ASF1A (ENSPMRG00000006339)	ENSPMRG00000006330 ##22	PLN (ENSPMRG00000006326)	CEP85L (ENSPMRG00000006312)	SLC35F1 (ENSPMRG00000006298)	ENSPMRG00000006290	GOPC (ENSPMRG00000006277)	ENSPMRG00000006271	DCBLD1 (ENSPMRG00000006247)	RFX6 (ENSPMRG00000006227)	GPRC6A (ENSPMRG00000006219)	ENSPMRG00000006208	ENSPMRG00000006182	ENSPMRG00000006165	ENSPMRG00000006159	ENSPMRG00000006121	RWDD1 (ENSPMRG00000006088)
Argentine black and white tegu	MODERN SPECIES	2	NKAIN2 (ENSSMRG00000011996)	ENSSMRG00000012048	CLVS2 (ENSSMRG00000012096)	ENSSMRG00000012097	CCDC185 (ENSSMRG00000012098)	SMPDL3A (ENSSMRG00000012156)	ENSSMRG00000012158	PKIB (ENSSMRG00000012159)	SERINC1 (ENSSMRG00000012160)	HSF2 (ENSSMRG00000012164)	GJA1 (ENSSMRG00000012223)	ENSSMRG00000012224	TBC1D32 (ENSSMRG00000012241)	MAN1A1 (ENSSMRG00000012301)	FAM184A (ENSSMRG00000012304)	ENSSMRG00000012350 ##22	ENSSMRG00000012353	CEP85L (ENSSMRG00000012355)	PLN (ENSSMRG00000012356)	SLC35F1 (ENSSMRG00000012458)	NUS1 (ENSSMRG00000012461)	ENSSMRG00000012462	GOPC (ENSSMRG00000012464)	DCBLD1 (ENSSMRG00000012481)	VGLL2 (ENSSMRG00000012484)	ENSSMRG00000012485	RFX6 (ENSSMRG00000012496)	GPRC6A (ENSSMRG00000012497)	FAM162B (ENSSMRG00000012498)	KPNA5 (ENSSMRG00000012499)	ZUP1 (ENSSMRG00000012520)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797
Elapidae	ANCESTRAL SPECIES		ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906.w	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b.l.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT00940000169801	ENSGT00390000004692.d.b	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000156535.l	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797	ENSGT00940000156772.pb.b	ENSGT00390000009168.cc.a	ENSGT00390000003880.b.b
Indian cobra	MODERN SPECIES		HDDC2 (ENSNNAG00000004353)	TPD52L1 (ENSNNAG00000004443)	RNF217 (ENSNNAG00000004704)	NKAIN2 (ENSNNAG00000004762)	ENSNNAG00000004795	CLVS2 (ENSNNAG00000004833)	ENSNNAG00000004841	FABP7 (ENSNNAG00000004844)	PKIB (ENSNNAG00000004855)	SERINC1 (ENSNNAG00000004864)	ENSNNAG00000004891	GJA1 (ENSNNAG00000004954)	TBC1D32 (ENSNNAG00000004977)	MAN1A1 (ENSNNAG00000005060)	FAM184A (ENSNNAG00000005109)	ENSNNAG00000005218 ##22	ASF1A (ENSNNAG00000005251)	CEP85L (ENSNNAG00000005278)	PLN (ENSNNAG00000005326)	SLC35F1 (ENSNNAG00000005340)	NUS1 (ENSNNAG00000005379)	GOPC (ENSNNAG00000005402)	DCBLD1 (ENSNNAG00000005461)	VGLL2 (ENSNNAG00000005489)	RFX6 (ENSNNAG00000005505)	GPRC6A (ENSNNAG00000005575)	KPNA5 (ENSNNAG00000005601)	ZUP1 (ENSNNAG00000005640)	ENSNNAG00000005682	ENSNNAG00000005723	ENSNNAG00000005895
Elapidae_a	ANCESTRAL SPECIES	34	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906.w	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b.l.b	ENSGT00940000158188	ENSGT00530000063669.b.g	ENSGT00940000169801	ENSGT00530000063669.b.h	ENSGT00390000004692.d.b	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000156535.l	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797	ENSGT00940000156772.pb.b
Acanthophiinae	ANCESTRAL SPECIES	34	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906.w	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b.l.b	ENSGT00940000158188	ENSGT00530000063669.b.g	ENSGT00390000004692.d.b.u	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000156535.l	ENSGT00940000157334	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797	ENSGT00940000156772.pb.b
Eastern brown snake	MODERN SPECIES	28	RNF217 (ENSPTXG00000003708)	ENSPTXG00000003707	ENSPTXG00000003703	CLVS2 (ENSPTXG00000003699)	ENSPTXG00000003696	FABP7 (ENSPTXG00000003694)	PKIB (ENSPTXG00000003693)	SERINC1 (ENSPTXG00000003692)	HSF2 (ENSPTXG00000003690)	GJA1 (ENSPTXG00000003688)	TBC1D32 (ENSPTXG00000003686)	ENSPTXG00000003677	MAN1A1 (ENSPTXG00000003672)	FAM184A (ENSPTXG00000003667)	ASF1A (ENSPTXG00000003663)	ENSPTXG00000003661 ##22	PLN (ENSPTXG00000003659)	CEP85L (ENSPTXG00000003655)	SLC35F1 (ENSPTXG00000003653)	NUS1 (ENSPTXG00000003649)	GOPC (ENSPTXG00000003648)	DCBLD1 (ENSPTXG00000003647)	VGLL2 (ENSPTXG00000003646)	RFX6 (ENSPTXG00000003644)	GPRC6A (ENSPTXG00000003643)	KPNA5 (ENSPTXG00000003640)	ZUP1 (ENSPTXG00000003639)	DHRS1 (ENSPTXG00000003628)	ENSPTXG00000003624
Blue-lipped sea krait	MODERN SPECIES	8408														ENSLLTG00000010864	ASF1A (ENSLLTG00000010838)	ENSLLTG00000010809 ##22
Lizard	MODERN SPECIES		SERINC1 (ENSACAG00000001363)	HSF2 (ENSACAG00000001260)	ENSACAG00000044946	ENSACAG00000038182	GJA1 (ENSACAG00000007625)	TBC1D32 (ENSACAG00000007537)	ENSACAG00000038837	ENSACAG00000029482 #36	ENSACAG00000035393 #36	ENSACAG00000041765	ENSACAG00000041268	ENSACAG00000045160	ENSACAG00000042456	MAN1A1 (ENSACAG00000017718)	FAM184A (ENSACAG00000017700)	ENSACAG00000017689 ##22	ASF1A (ENSACAG00000017698)	CEP85L (ENSACAG00000017676)	PLN (ENSACAG00000017688)	SLC35F1 (ENSACAG00000014342)	NUS1 (ENSACAG00000014322)	ENSACAG00000014319	GOPC (ENSACAG00000014287)	DCBLD1 (ENSACAG00000014255)	VGLL2 (ENSACAG00000014238)	RFX6 (ENSACAG00000014185)	GPRC6A (ENSACAG00000014169)	FAM162B (ENSACAG00000036825)	KPNA5 (ENSACAG00000014041)	ZUP1 (ENSACAG00000013995)	ENSACAG00000039059
tuatara	MODERN SPECIES	571													MAN1A1 (ENSSPUG00000010093)	FAM184A (ENSSPUG00000009929)	ASF1A (ENSSPUG00000009891)	ENSSPUG00000009870 ##22	PLN (ENSSPUG00000009856)	CEP85L (ENSSPUG00000009830)	SLC35F1 (ENSSPUG00000009686)	NUS1 (ENSSPUG00000009582)	ENSSPUG00000009559	GOPC (ENSSPUG00000009534)	DCBLD1 (ENSSPUG00000009483)	VGLL2 (ENSSPUG00000009465)	ENSSPUG00000009450	RFX6 (ENSSPUG00000009255)
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Archosauria	ANCESTRAL SPECIES	3	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Aves	ANCESTRAL SPECIES	10	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Neognathae	ANCESTRAL SPECIES	2	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Great tit	MODERN SPECIES	22	HDDC2 (ENSPMJG00000013675)	TPD52L1 (ENSPMJG00000013683)	RNF217 (ENSPMJG00000013684)	NKAIN2 (ENSPMJG00000013701)	ENSPMJG00000013746	CLVS2 (ENSPMJG00000013759)	SMPDL3A (ENSPMJG00000013760)	FABP7 (ENSPMJG00000013761)	ENSPMJG00000013762	SERINC1 (ENSPMJG00000013767)	HSF2 (ENSPMJG00000013768)	GJA1 (ENSPMJG00000013803)	TBC1D32 (ENSPMJG00000013805)	MAN1A1 (ENSPMJG00000013873)	FAM184A (ENSPMJG00000013989)	ENSPMJG00000013993 ##22	ASF1A (ENSPMJG00000013994)	CEP85L (ENSPMJG00000013996)	PLN (ENSPMJG00000014007)	SLC35F1 (ENSPMJG00000014036)	ENSPMJG00000014037	NUS1 (ENSPMJG00000014047)	ENSPMJG00000014049	GOPC (ENSPMJG00000014050)	DCBLD1 (ENSPMJG00000014053)	ROS1 (ENSPMJG00000014055)	VGLL2 (ENSPMJG00000014058)	RFX6 (ENSPMJG00000014077)	GPRC6A (ENSPMJG00000014090)	FAM162B (ENSPMJG00000014092)	KPNA5 (ENSPMJG00000014094)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Flycatcher	MODERN SPECIES	21	HDDC2 (ENSFALG00000011450)	TPD52L1 (ENSFALG00000028310)	RNF217 (ENSFALG00000011436)	NKAIN2 (ENSFALG00000023828)	ENSFALG00000026618	CLVS2 (ENSFALG00000024679)	SMPDL3A (ENSFALG00000011393)	FABP7 (ENSFALG00000027820)	PKIB (ENSFALG00000023276)	SERINC1 (ENSFALG00000011329)	HSF2 (ENSFALG00000011294)	GJA1 (ENSFALG00000015301)	TBC1D32 (ENSFALG00000011270)	MAN1A1 (ENSFALG00000011257)	FAM184A (ENSFALG00000011225)	ENSFALG00000011180 ##22	ASF1A (ENSFALG00000011201)	CEP85L (ENSFALG00000011168)	PLN (ENSFALG00000015284)	SLC35F1 (ENSFALG00000011158)	NUS1 (ENSFALG00000022865)	ENSFALG00000011131	GOPC (ENSFALG00000011117)	DCBLD1 (ENSFALG00000011109)	ROS1 (ENSFALG00000011085)	VGLL2 (ENSFALG00000011071)	RFX6 (ENSFALG00000011057)	GPRC6A (ENSFALG00000011050)	FAM162B (ENSFALG00000011046)	KPNA5 (ENSFALG00000011039)	ZUP1 (ENSFALG00000011032)
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Passeroidea	ANCESTRAL SPECIES		ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Common canary	MODERN SPECIES	1	TPD52L1 (ENSSCAG00000014160)	RNF217 (ENSSCAG00000014171)	NKAIN2 (ENSSCAG00000014190)	ENSSCAG00000014209	CLVS2 (ENSSCAG00000014224)	SMPDL3A (ENSSCAG00000014258)	FABP7 (ENSSCAG00000014265)	PKIB (ENSSCAG00000014270)	SERINC1 (ENSSCAG00000014278)	HSF2 (ENSSCAG00000014292)	GJA1 (ENSSCAG00000014328)	ENSSCAG00000014329	ENSSCAG00000014337	MAN1A1 (ENSSCAG00000014413)	FAM184A (ENSSCAG00000014546)	ENSSCAG00000014619 ##22	ASF1A (ENSSCAG00000014626)	CEP85L (ENSSCAG00000014635)	SLC35F1 (ENSSCAG00000014641)	NUS1 (ENSSCAG00000014650)	ENSSCAG00000014659	GOPC (ENSSCAG00000014666)	DCBLD1 (ENSSCAG00000014671)	ROS1 (ENSSCAG00000014691)	VGLL2 (ENSSCAG00000014711)	RFX6 (ENSSCAG00000014718)	GPRC6A (ENSSCAG00000014730)	FAM162B (ENSSCAG00000014732)	KPNA5 (ENSSCAG00000014738)	ZUP1 (ENSSCAG00000014748)	RWDD1 (ENSSCAG00000014762)
Zebra finch	MODERN SPECIES	23	TPD52L1 (ENSTGUG00000011802)	RNF217 (ENSTGUG00000026978)	NKAIN2 (ENSTGUG00000019299)	ENSTGUG00000011813	CLVS2 (ENSTGUG00000026233)	SMPDL3A (ENSTGUG00000011820)	FABP7 (ENSTGUG00000011826)	PKIB (ENSTGUG00000029133)	SERINC1 (ENSTGUG00000011827)	HSF2 (ENSTGUG00000011838)	GJA1 (ENSTGUG00000011847)	TBC1D32 (ENSTGUG00000011850)	MAN1A1 (ENSTGUG00000011863)	FAM184A (ENSTGUG00000011868)	ASF1A (ENSTGUG00000019264)	ENSTGUG00000011874 ##22	PLN (ENSTGUG00000022055)	CEP85L (ENSTGUG00000011879)	SLC35F1 (ENSTGUG00000028242)	NUS1 (ENSTGUG00000011892)	ENSTGUG00000011898	GOPC (ENSTGUG00000011901)	DCBLD1 (ENSTGUG00000011905)	ROS1 (ENSTGUG00000011909)	VGLL2 (ENSTGUG00000011922)	RFX6 (ENSTGUG00000011924)	GPRC6A (ENSTGUG00000011925)	FAM162B (ENSTGUG00000024738)	KPNA5 (ENSTGUG00000011928)	ZUP1 (ENSTGUG00000011930)	RWDD1 (ENSTGUG00000011932)
Medium ground finch	MODERN SPECIES	9	TPD52L1 (ENSGFOG00000008274)	RNF217 (ENSGFOG00000008266)	NKAIN2 (ENSGFOG00000008252)	ENSGFOG00000008246	CLVS2 (ENSGFOG00000008230)	SMPDL3A (ENSGFOG00000008218)	FABP7 (ENSGFOG00000008214)	PKIB (ENSGFOG00000008208)	SERINC1 (ENSGFOG00000008203)	HSF2 (ENSGFOG00000008144)	GJA1 (ENSGFOG00000008134)	TBC1D32 (ENSGFOG00000008101)	MAN1A1 (ENSGFOG00000008016)	FAM184A (ENSGFOG00000008001)	ASF1A (ENSGFOG00000007994)	ENSGFOG00000007979 ##22	PLN (ENSGFOG00000007974)	CEP85L (ENSGFOG00000007957)	SLC35F1 (ENSGFOG00000007946)	NUS1 (ENSGFOG00000007937)	ENSGFOG00000007920	GOPC (ENSGFOG00000007881)	DCBLD1 (ENSGFOG00000007857)	ROS1 (ENSGFOG00000007810)	VGLL2 (ENSGFOG00000007798)	RFX6 (ENSGFOG00000007776)	GPRC6A (ENSGFOG00000007765)	FAM162B (ENSGFOG00000007757)	KPNA5 (ENSGFOG00000007745)	ZUP1 (ENSGFOG00000007669)	RWDD1 (ENSGFOG00000007640)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Kakapo	MODERN SPECIES	23	HDDC2 (ENSSHBG00005001969)	TPD52L1 (ENSSHBG00005001988)	RNF217 (ENSSHBG00005002021)	ENSSHBG00005002074	ENSSHBG00005002107	CLVS2 (ENSSHBG00005002125)	FABP7 (ENSSHBG00005002139)	SMPDL3A (ENSSHBG00005002152)	PKIB (ENSSHBG00005002171)	SERINC1 (ENSSHBG00005002179)	HSF2 (ENSSHBG00005002197)	GJA1 (ENSSHBG00005002214)	TBC1D32 (ENSSHBG00005002264)	MAN1A1 (ENSSHBG00005002370)	FAM184A (ENSSHBG00005002437)	ENSSHBG00005002545 ##22	ASF1A (ENSSHBG00005002562)	CEP85L (ENSSHBG00005002612)	PLN (ENSSHBG00005002660)	SLC35F1 (ENSSHBG00005002697)	ENSSHBG00005002709	NUS1 (ENSSHBG00005002724)	ENSSHBG00005002743	GOPC (ENSSHBG00005002757)	DCBLD1 (ENSSHBG00005002782)	ROS1 (ENSSHBG00005003030)	VGLL2 (ENSSHBG00005003458)	RFX6 (ENSSHBG00005003482)	GPRC6A (ENSSHBG00005003502)	FAM162B (ENSSHBG00005003515)	KPNA5 (ENSSHBG00005003578)
Golden eagle	MODERN SPECIES	11	RNF217 (ENSACCG00020005719)	NKAIN2 (ENSACCG00020005736)	ENSACCG00020005778	ENSACCG00020005807	CLVS2 (ENSACCG00020005834)	SMPDL3A (ENSACCG00020005853)	FABP7 (ENSACCG00020005873)	PKIB (ENSACCG00020005889)	SERINC1 (ENSACCG00020005900)	HSF2 (ENSACCG00020005926)	ENSACCG00020005944	GJA1 (ENSACCG00020005955)	ENSACCG00020005966	MAN1A1 (ENSACCG00020006094)	FAM184A (ENSACCG00020006215)	ENSACCG00020006239 ##22	ASF1A (ENSACCG00020006250)	CEP85L (ENSACCG00020006260)	SLC35F1 (ENSACCG00020006275)	NUS1 (ENSACCG00020006287)	ENSACCG00020006297	GOPC (ENSACCG00020005891)	DCBLD1 (ENSACCG00020005910)	ENSACCG00020005920	PPIL6 (ENSACCG00020005991)	ZBTB24 (ENSACCG00020006020)	AK9 (ENSACCG00020006076)	FIG4 (ENSACCG00020006127)	GPR6 (ENSACCG00020006149)	WASF1 (ENSACCG00020006159)	CDC40 (ENSACCG00020006170)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Anatidae	ANCESTRAL SPECIES		ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b.d	ENSGT00530000063669.b.c	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Pink-footed goose	MODERN SPECIES	146								SERINC1 (ENSABRG00000000271)	HSF2 (ENSABRG00000000251)	ENSABRG00000000241	GJA1 (ENSABRG00000000231)	TBC1D32 (ENSABRG00000000156)	MAN1A1 (ENSABRG00000000136)	FAM184A (ENSABRG00000000097)	ASF1A (ENSABRG00000000086)	ENSABRG00000000082 ##22	PLN (ENSABRG00000000072)	CEP85L (ENSABRG00000000069)	SLC35F1 (ENSABRG00000000062)
Duck	MODERN SPECIES	21	EPB41L2 (ENSAPLG00000011001)	ENSAPLG00000010992	MSH5 (ENSAPLG00000000949)	ENSAPLG00000026000	CLVS2 (ENSAPLG00000014464)	SMPDL3A (ENSAPLG00000014509)	FABP7 (ENSAPLG00000014523)	PKIB (ENSAPLG00000019363)	SERINC1 (ENSAPLG00000014540)	HSF2 (ENSAPLG00000014710)	GJA1 (ENSAPLG00000000726)	TBC1D32 (ENSAPLG00000014789)	MAN1A1 (ENSAPLG00000015044)	ENSAPLG00000026286	ENSAPLG00000021038	ENSAPLG00000015174 ##22	ASF1A (ENSAPLG00000027204)	CEP85L (ENSAPLG00000015522)	PLN (ENSAPLG00000002357)	SLC35F1 (ENSAPLG00000015578)	NUS1 (ENSAPLG00000015621)	ENSAPLG00000000593	GOPC (ENSAPLG00000000612)	DCBLD1 (ENSAPLG00000001269)	ROS1 (ENSAPLG00000002159)	VGLL2 (ENSAPLG00000027398)	RFX6 (ENSAPLG00000002929)	ENSAPLG00000024644	ENSAPLG00000003079	FAM162B (ENSAPLG00000025053)	KPNA5 (ENSAPLG00000003395)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Japanese quail	MODERN SPECIES	21	NCOA7 (ENSCJPG00005009148)	HEY2 (ENSCJPG00005009151)	HDDC2 (ENSCJPG00005009155)	TPD52L1 (ENSCJPG00005009156)	NKAIN2 (ENSCJPG00005009157)	TRDN (ENSCJPG00005009159)	CLVS2 (ENSCJPG00005009161)	SMPDL3A (ENSCJPG00005009162)	FABP7 (ENSCJPG00005009163)	HSF2 (ENSCJPG00005009164)	SERINC1 (ENSCJPG00005009165)	GJA1 (ENSCJPG00005009168)	TBC1D32 (ENSCJPG00005009170)	MAN1A1 (ENSCJPG00005009175)	FAM184A (ENSCJPG00005009180)	ENSCJPG00005009184 ##22	ASF1A (ENSCJPG00005009186)	CEP85L (ENSCJPG00005009190)	SLC35F1 (ENSCJPG00005009192)	NUS1 (ENSCJPG00005009193)	ENSCJPG00005009194	GOPC (ENSCJPG00005009195)	DCBLD1 (ENSCJPG00005009197)	ROS1 (ENSCJPG00005009199)	ENSCJPG00005009200	VGLL2 (ENSCJPG00005009201)	RFX6 (ENSCJPG00005009203)	GPRC6A (ENSCJPG00005009204)	KPNA5 (ENSCJPG00005009205)	FAM162B (ENSCJPG00005009206)	ZUP1 (ENSCJPG00005009207)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00390000009937	ENSGT00940000159202	ENSGT00730000111285	ENSGT00940000160565	ENSGT00510000049207	ENSGT00940000157632	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Chicken	MODERN SPECIES	22	TPD52L1 (ENSGALG00010004958)	RNF217 (ENSGALG00010004977)	NKAIN2 (ENSGALG00010005010)	TRDN (ENSGALG00010005075)	CLVS2 (ENSGALG00010012755)	SMPDL3A (ENSGALG00010012761)	FABP7 (ENSGALG00010012780)	PKIB (ENSGALG00010012837)	SERINC1 (ENSGALG00010012848)	HSF2 (ENSGALG00010012875)	GJA1 (ENSGALG00010012939)	TBC1D32 (ENSGALG00010012959)	ENS-1 (ENSGALG00010015173)	MAN1A1 (ENSGALG00010014922)	FAM184A (ENSGALG00010015017)	MCM9 (ENSGALG00010015028) ##22	ASF1A (ENSGALG00010015080)	CEP85L (ENSGALG00010015123)	PLN (ENSGALG00010015134)	SLC35F1 (ENSGALG00010015035)	NUS1 (ENSGALG00010012629)	ENSGALG00010014560	GOPC (ENSGALG00010012341)	DCBLD1 (ENSGALG00010012354)	ROS1 (ENSGALG00010012360)	VGLL2 (ENSGALG00010012376)	RFX6 (ENSGALG00010012330)	GPRC6A (ENSGALG00010014624)	FAM162B (ENSGALG00010014653)	KPNA5 (ENSGALG00010014707)	ZUP1 (ENSGALG00010014734)
Turkey	MODERN SPECIES	11	ENSMGAG00000005766	ENSMGAG00000013374	ENSMGAG00000013370	ENSMGAG00000013369	ENSMGAG00000015882	ENSMGAG00000013368	ENSMGAG00000013367	ENSMGAG00000013356	ENSMGAG00000013351	ENSMGAG00000013352	ENSMGAG00000013348	NUS1 (ENSMGAG00000013346)	ENSMGAG00000013344	ENSMGAG00000013342	PLN (ENSMGAG00000017858)	ENSMGAG00000013336 ##22	ENSMGAG00000013338	ENSMGAG00000018826	ENSMGAG00000013328	ENSMGAG00000013488	ENSMGAG00000013478	ENSMGAG00000013485	CEP57L1 (ENSMGAG00000013476)	CD164 (ENSMGAG00000018222)	ENSMGAG00000013472	ENSMGAG00000013463	ENSMGAG00000013465	ENSMGAG00000020667	ENSMGAG00000013457	ENSMGAG00000020810	ENSMGAG00000013452
African ostrich	MODERN SPECIES	837															FAM184A (ENSSCUG00000017353)	ENSSCUG00000017356 ##22	ASF1A (ENSSCUG00000017357)	CEP85L (ENSSCUG00000017358)	PLN (ENSSCUG00000017359)	SLC35F1 (ENSSCUG00000017363)	NUS1 (ENSSCUG00000017368)	ENSSCUG00000017369	GOPC (ENSSCUG00000017372)	DCBLD1 (ENSSCUG00000017375)	ROS1 (ENSSCUG00000017377)	RFX6 (ENSSCUG00000017383)	GPRC6A (ENSSCUG00000017385)	ENSSCUG00000017386	KPNA5 (ENSSCUG00000017388)	ZUP1 (ENSSCUG00000017391)	ENSSCUG00000017396
Australian saltwater crocodile	MODERN SPECIES	38	ENSCPRG00005004917	CLVS2 (ENSCPRG00005004908)	ENSCPRG00005004906	SMPDL3A (ENSCPRG00005004899)	FABP7 (ENSCPRG00005004895)	PKIB (ENSCPRG00005004890)	SERINC1 (ENSCPRG00005004876)	HSF2 (ENSCPRG00005004852)	GJA1 (ENSCPRG00005004819)	TBC1D32 (ENSCPRG00005004778)	ENSCPRG00005004762	ENSCPRG00005004749	MAN1A1 (ENSCPRG00005004507)	FAM184A (ENSCPRG00005004448)	ASF1A (ENSCPRG00005004429)	ENSCPRG00005004423 ##22	PLN (ENSCPRG00005004410)	CEP85L (ENSCPRG00005004358)	SLC35F1 (ENSCPRG00005004339)	NUS1 (ENSCPRG00005004326)	ENSCPRG00005004319	GOPC (ENSCPRG00005004309)	DCBLD1 (ENSCPRG00005004302)	ROS1 (ENSCPRG00005004284)	VGLL2 (ENSCPRG00005004268)	RFX6 (ENSCPRG00005004215)	GPRC6A (ENSCPRG00005004201)	FAM162B (ENSCPRG00005004198)	KPNA5 (ENSCPRG00005003739)	ZUP1 (ENSCPRG00005003679)	DHRS1 (ENSCPRG00005003677)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00730000111285	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Testudinoidea	ANCESTRAL SPECIES	32	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00390000013102.f	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
Emydidae	ANCESTRAL SPECIES	46	ENSGT00940000160565	ENSGT00940000157989.a.a	ENSGT00510000049207	ENSGT00940000157632	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00530000064264	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00390000013102.f	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT01050000244824.E ##22	ENSGT00390000004692.d.b	ENSGT00620000087993.a.a	ENSGT00390000002403	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232
painted turtle	MODERN SPECIES	12	NKAIN2 (ENSCPBG00000018559)	ENSCPBG00000018562	ENSCPBG00000018571	ENSCPBG00000018607	CLVS2 (ENSCPBG00000018665)	SMPDL3A (ENSCPBG00000018678)	FABP7 (ENSCPBG00000018684)	ENSCPBG00000018690	SERINC1 (ENSCPBG00000018696)	HSF2 (ENSCPBG00000018706)	GJA1 (ENSCPBG00000018721)	TBC1D32 (ENSCPBG00000018735)	ENSCPBG00000018759	MAN1A1 (ENSCPBG00000018765)	FAM184A (ENSCPBG00000018775)	ENSCPBG00000018796 ##22	ASF1A (ENSCPBG00000018809)	CEP85L (ENSCPBG00000018810)	SLC35F1 (ENSCPBG00000018818)	NUS1 (ENSCPBG00000018822)	ENSCPBG00000018824	GOPC (ENSCPBG00000018825)	DCBLD1 (ENSCPBG00000018829)	ROS1 (ENSCPBG00000018832)	VGLL2 (ENSCPBG00000018846)	RFX6 (ENSCPBG00000018850)	SNAP91 (ENSCPBG00000018932)	PRSS35 (ENSCPBG00000022998)	ME1 (ENSCPBG00000023019)	RWDD2A (ENSCPBG00000023036)	PGM3 (ENSCPBG00000023044)
Three-toed box turtle	MODERN SPECIES	31	ENSTMTG00000000246	ENSTMTG00000000268	CLVS2 (ENSTMTG00000000284)	ENSTMTG00000000296	SMPDL3A (ENSTMTG00000000307)	FABP7 (ENSTMTG00000000319)	PKIB (ENSTMTG00000000336)	SERINC1 (ENSTMTG00000000354)	HSF2 (ENSTMTG00000000381)	GJA1 (ENSTMTG00000000404)	TBC1D32 (ENSTMTG00000000490)	ENSTMTG00000000643	ENSTMTG00000000653	MAN1A1 (ENSTMTG00000000667)	FAM184A (ENSTMTG00000000715)	ENSTMTG00000000804 ##22	ASF1A (ENSTMTG00000000831)	CEP85L (ENSTMTG00000000850)	PLN (ENSTMTG00000000877)	SLC35F1 (ENSTMTG00000000885)	NUS1 (ENSTMTG00000000917)	ENSTMTG00000000924	GOPC (ENSTMTG00000000933)	DCBLD1 (ENSTMTG00000000948)	ROS1 (ENSTMTG00000001045)	VGLL2 (ENSTMTG00000001389)	RFX6 (ENSTMTG00000001411)	GPRC6A (ENSTMTG00000001425)	FAM162B (ENSTMTG00000001434)	KPNA5 (ENSTMTG00000001446)	ZUP1 (ENSTMTG00000001461)
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000157989.a.a	ENSGT00940000157632.c	ENSGT00940000157632.d	ENSGT00740000115684	ENSGT00950000183182.a.b	ENSGT00940000156713	ENSGT00960000186966	ENSGT01030000234623.a.a.a.a.b	ENSGT00940000155906	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00390000013102.f	ENSGT00940000158188	ENSGT00530000063669.b	ENSGT00390000004692.d.b	ENSGT01050000244824.E ##22	ENSGT00390000002403	ENSGT00620000087993.a.a	ENSGT00390000015655.b	ENSGT00390000003223	ENSGT00940000162914	ENSGT00940000156535	ENSGT00940000157334	ENSGT00940000160831	ENSGT00530000063353.a.b.a	ENSGT01050000244879.b.a.b.b	ENSGT00940000158416	ENSGT00640000091497.b	ENSGT01050000244950.a.a.b	ENSGT00390000008232	ENSGT00940000157797
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005000147	CLVS2 (ENSGEVG00005000130)	CCDC185 (ENSGEVG00005000108)	SMPDL3A (ENSGEVG00005018845)	FABP7 (ENSGEVG00005018817)	ENSGEVG00005018804	SERINC1 (ENSGEVG00005018791)	HSF2 (ENSGEVG00005018770)	GJA1 (ENSGEVG00005018760)	TBC1D32 (ENSGEVG00005018504)	ENSGEVG00005018462	ENSGEVG00005018048	ENSGEVG00005017901	FAM184A (ENSGEVG00005017851)	ASF1A (ENSGEVG00005017831)	ENSGEVG00005017804 ##22	PLN (ENSGEVG00005017789)	CEP85L (ENSGEVG00005017768)	SLC35F1 (ENSGEVG00005017730)	NUS1 (ENSGEVG00005017695)	ENSGEVG00005017671	GOPC (ENSGEVG00005017652)	DCBLD1 (ENSGEVG00005017616)	ROS1 (ENSGEVG00005016750)	VGLL2 (ENSGEVG00005016536)	RFX6 (ENSGEVG00005016425)	GPRC6A (ENSGEVG00005016365)	FAM162B (ENSGEVG00005016336)	KPNA5 (ENSGEVG00005016291)	ZUP1 (ENSGEVG00005016262)	DHRS1 (ENSGEVG00005016217)
Abingdon island giant tortoise	MODERN SPECIES	737															ASF1A (ENSCABG00000009099)	ENSCABG00000009083 ##22	PLN (ENSCABG00000009080)	CEP85L (ENSCABG00000009076)
Chinese turtle	MODERN SPECIES	1088											ENSPSIG00000000727	MAN1A1 (ENSPSIG00000014390)	ENSPSIG00000000720	FAM184A (ENSPSIG00000013113)	ASF1A (ENSPSIG00000012763)	ENSPSIG00000012193 ##22	PLN (ENSPSIG00000011775)	CEP85L (ENSPSIG00000011652)	SLC35F1 (ENSPSIG00000011306)	NUS1 (ENSPSIG00000011255)	ENSPSIG00000011049	GOPC (ENSPSIG00000010909)	DCBLD1 (ENSPSIG00000010720)	ROS1 (ENSPSIG00000008974)	VGLL2 (ENSPSIG00000008939)	RFX6 (ENSPSIG00000008368)	GPRC6A (ENSPSIG00000008333)	FAM162B (ENSPSIG00000008096)	KPNA5 (ENSPSIG00000007891)	ENSPSIG00000007710	ENSPSIG00000007653
Coelacanth	MODERN SPECIES	785													ENSLACG00000014357	ENSLACG00000013855	FAM184A (ENSLACG00000013107)	mcm9 (ENSLACG00000012218) ##22	CEP85L (ENSLACG00000008954)	SLC35F1 (ENSLACG00000003459)
Cyclostomata	ANCESTRAL SPECIES	1240															ENSGT00620000087993.a.a	ENSGT01050000244824.E ##22
Hagfish	MODERN SPECIES	1165										ENSEBUG00000004295	snrpd1 (ENSEBUG00000003170)	sacm1la (ENSEBUG00000005839)	ENSEBUG00000003549	gpn2 (ENSEBUG00000006896)	ENSEBUG00000002069	ENSEBUG00000006963 ##22	ENSEBUG00000008864	ENSEBUG00000009793	ENSEBUG00000015561	ENSEBUG00000003260	ENSEBUG00000009843	ENSEBUG00000012062	ENSEBUG00000008301	ENSEBUG00000010721	MAPKAP1 (ENSEBUG00000014172)	GAPVD1 (ENSEBUG00000012964)	ENSEBUG00000003497	ENSEBUG00000014544	tmed5 (ENSEBUG00000001454)	hs2st1a (ENSEBUG00000016833)
Ciona	ANCESTRAL SPECIES																	ENSGT01050000244824.E ##22
Ciona savignyi	MODERN SPECIES	302														ENSCSAVG00000007917	ENSCSAVG00000007915	ENSCSAVG00000007912 ##22