Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000155921 #7	ENSGT00940000155780 #8	ENSGT00390000009948.c #10	ENSGT00940000158949 #12	ENSGT00940000157500 #14	ENSGT00940000154372.b	ENSGT00940000159911 #15	ENSGT00940000155648.B #16	ENSGT00940000157750 #17	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #24	ENSGT00940000166824.c	ENSGT00940000157373 #27	ENSGT00940000156169 #28	ENSGT00950000182946.c.a	ENSGT00950000182946.d.r	ENSGT00950000182946.c.b.a	ENSGT00940000154696 #30	ENSGT00940000162142	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00800000124060.B	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000155921 #7	ENSGT00940000155780 #8	ENSGT00390000009948.c #10	ENSGT00940000158949 #12	ENSGT00940000157500 #14	ENSGT00940000159911 #15	ENSGT00940000155648.B #16	ENSGT00940000157750 #17	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #24	ENSGT00940000157373 #27	ENSGT00940000156169 #28	ENSGT00950000182946.c.a	ENSGT00950000182946.d.r	ENSGT00950000182946.c.b.b	ENSGT00950000182946.c.b.a	ENSGT00940000154696 #30	ENSGT00940000162142	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36
Hystricomorpha_b	ANCESTRAL SPECIES	72	ENSGT00800000124060.B	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748	ENSGT00940000155921 #7	ENSGT00940000155780 #8	ENSGT00390000009948.c #10	ENSGT00940000158949 #12	ENSGT00940000157500 #14	ENSGT00940000159911 #15	ENSGT00940000155648.B #16	ENSGT00940000157750 #17	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #24	ENSGT00940000157373 #27	ENSGT00940000156169 #28	ENSGT00950000182946.d.q	ENSGT00950000182946.d.r	ENSGT00950000182946.c.b.a	ENSGT00940000154696 #30	ENSGT00940000162142	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36	ENSGT00940000160031 #37
Degu	MODERN SPECIES	87	KIF11 (ENSODEG00000006812) #7	IDE (ENSODEG00000005398) #8	ENSODEG00000005936 #9	MARCHF5 (ENSODEG00000004219) #10	ENSODEG00000004464 #11	CPEB3 (ENSODEG00000004591) #12	ENSODEG00000005031 #13	BTAF1 (ENSODEG00000005172) #14	TNKS2 (ENSODEG00000004816) #15	PPP1R3C (ENSODEG00000006013) #16	HECTD2 (ENSODEG00000004980) #17	ENSODEG00000005047 #18	PCGF5 (ENSODEG00000004787) #19	ANKRD1 (ENSODEG00000005129) #20	ENSODEG00000004530 #21	HTR7 (ENSODEG00000004910) #22	ENSODEG00000019106 #23	KIF20B (ENSODEG00000005304) #24	ENSODEG00000004557 #25	ENSODEG00000019069 #26	PANK1 (ENSODEG00000006515) #27	SLC16A12 (ENSODEG00000006954) #28	ENSODEG00000006311 #29	LIPA (ENSODEG00000005659) #30	ENSODEG00000005184 #31	ACTA2 (ENSODEG00000005541) #32	ENSODEG00000005966 #33	ANKRD22 (ENSODEG00000006197) #34	LIPM (ENSODEG00000004722) #35	LIPN (ENSODEG00000005009) #36	LIPK (ENSODEG00000004941) #37
Long-tailed chinchilla	MODERN SPECIES	132	CYP26C1 (ENSCLAG00000010270)	EXOC6 (ENSCLAG00000008310)	HHEX (ENSCLAG00000012119)	KIF11 (ENSCLAG00000013622) #7	IDE (ENSCLAG00000013467) #8	MARCHF5 (ENSCLAG00000013192) #10	CPEB3 (ENSCLAG00000011817) #12	BTAF1 (ENSCLAG00000012888) #14	TNKS2 (ENSCLAG00000013558) #15	ENSCLAG00000010844	PPP1R3C (ENSCLAG00000012433) #16	ENSCLAG00000012695 #17	PCGF5 (ENSCLAG00000013777) #19	ANKRD1 (ENSCLAG00000009887) #20	RPP30 (ENSCLAG00000008595) #21	HTR7 (ENSCLAG00000011360) #22	KIF20B (ENSCLAG00000008733) #24	PANK1 (ENSCLAG00000009547) #27	SLC16A12 (ENSCLAG00000008868) #28	ENSCLAG00000009282	ENSCLAG00000008375	IFIT2 (ENSCLAG00000009587)	LIPA (ENSCLAG00000015247) #30	CH25H (ENSCLAG00000011191)	FAS (ENSCLAG00000010233)	ACTA2 (ENSCLAG00000011268) #32	STAMBPL1 (ENSCLAG00000012073) #33	ANKRD22 (ENSCLAG00000013284) #34	LIPM (ENSCLAG00000009261) #35	LIPN (ENSCLAG00000012833) #36	LIPK (ENSCLAG00000009773) #37
Guinea pig	MODERN SPECIES	137	ENSCPOG00000014755	SDE2 (ENSCPOG00000014756)	ENSCPOG00000025231	ENSCPOG00000039202	ACBD3 (ENSCPOG00000007184)	LIN9 (ENSCPOG00000015642)	PARP1 (ENSCPOG00000015643)	STUM (ENSCPOG00000031019)	ITPKB (ENSCPOG00000013483)	RD3 (ENSCPOG00000022572)	PPP1R3C (ENSCPOG00000038237) #16	HECTD2 (ENSCPOG00000008922) #17	PCGF5 (ENSCPOG00000013156) #19	ANKRD1 (ENSCPOG00000002565) #20	RPP30 (ENSCPOG00000033174) #21	HTR7 (ENSCPOG00000007482) #22
Naked mole-rat female	MODERN SPECIES	4	KIF11 (ENSHGLG00000014395) #7	IDE (ENSHGLG00000012665) #8	MARCH5 (ENSHGLG00000044946) #10	CPEB3 (ENSHGLG00000014022) #12	BTAF1 (ENSHGLG00000010425) #14	FGFBP3 (ENSHGLG00000046261)	TNKS2 (ENSHGLG00000018423) #15	PPP1R3C (ENSHGLG00000045942) #16	ENSHGLG00000033981	HECTD2 (ENSHGLG00000013810) #17	PCGF5 (ENSHGLG00000016348) #19	ENSHGLG00000047830	ENSHGLG00000016315 #25	ENSHGLG00000016279 #20	ENSHGLG00000013072 #21	ENSHGLG00000011172 #22	ENSHGLG00000037303	ENSHGLG00000041517	ENSHGLG00000012239	ENSHGLG00000020968	ENSHGLG00000010782 #24	ENSHGLG00000043314	PANK1 (ENSHGLG00000010521) #27	SLC16A12 (ENSHGLG00000007331) #28	IFIT5 (ENSHGLG00000043608)	ENSHGLG00000012010	ENSHGLG00000011005	IFIT3 (ENSHGLG00000049612)	ENSHGLG00000039997	IFIT2 (ENSHGLG00000009880)	ENSHGLG00000049191 #30