Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00800000124060.A.b #7	ENSGT00390000005739.a.b #8	ENSGT00940000161748 #9	ENSGT00940000155921 #10	ENSGT00940000155780 #11	ENSGT00390000009948.c #12	ENSGT00940000158949 #13	ENSGT00940000157500 #14	ENSGT00940000154372.b	ENSGT00940000159911 #15	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #23	ENSGT00940000166824.c	ENSGT00940000157373 #24	ENSGT00940000156169 #25	ENSGT00950000182946.c.a ##28	ENSGT00950000182946.d.r #27	ENSGT00950000182946.c.b.a #28	ENSGT00940000154696 #29	ENSGT00940000162142 #30	ENSGT00950000183126.b.b #31	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00800000124060.B ##7	ENSGT00800000124060.A.b #7	ENSGT00390000005739.a.b #8	ENSGT00940000161748 #9	ENSGT00940000155921 #10	ENSGT00940000155780 #11	ENSGT00390000009948.c #12	ENSGT00940000158949 #13	ENSGT00940000157500 #14	ENSGT00940000159911 #15	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #23	ENSGT00940000157373 #24	ENSGT00940000156169 #25	ENSGT00950000182946.c.a ##28	ENSGT00950000182946.d.r #27	ENSGT00950000182946.c.b.b ##28	ENSGT00950000182946.c.b.a #28	ENSGT00940000154696 #29	ENSGT00940000162142 #30	ENSGT00950000183126.b.b #31	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36
Hystricomorpha_b	ANCESTRAL SPECIES	72	ENSGT00800000124060.B ##7	ENSGT00800000124060.A.b #7	ENSGT00390000005739.a.b #8	ENSGT00940000161748 #9	ENSGT00940000155921 #10	ENSGT00940000155780 #11	ENSGT00390000009948.c #12	ENSGT00940000158949 #13	ENSGT00940000157500 #14	ENSGT00940000159911 #15	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #23	ENSGT00940000157373 #24	ENSGT00940000156169 #25	ENSGT00950000182946.d.q #26	ENSGT00950000182946.d.r #27	ENSGT00950000182946.c.b.a #28	ENSGT00940000154696 #29	ENSGT00940000162142 #30	ENSGT00950000183126.b.b #31	ENSGT00940000154148.a.a #32	ENSGT00940000153710.b #33	ENSGT00390000009005 #34	ENSGT00940000156860 #35	ENSGT00940000161695 #36	ENSGT00940000160031 #37
Long-tailed chinchilla	MODERN SPECIES	132	CYP26C1 (ENSCLAG00000010270) #7	EXOC6 (ENSCLAG00000008310) #8	HHEX (ENSCLAG00000012119) #9	KIF11 (ENSCLAG00000013622) #10	IDE (ENSCLAG00000013467) #11	MARCHF5 (ENSCLAG00000013192) #12	CPEB3 (ENSCLAG00000011817) #13	BTAF1 (ENSCLAG00000012888) #14	TNKS2 (ENSCLAG00000013558) #15	ENSCLAG00000010844 #16	PPP1R3C (ENSCLAG00000012433) #17	ENSCLAG00000012695 #18	PCGF5 (ENSCLAG00000013777) #19	ANKRD1 (ENSCLAG00000009887) #20	RPP30 (ENSCLAG00000008595) #21	HTR7 (ENSCLAG00000011360) #22	KIF20B (ENSCLAG00000008733) #23	PANK1 (ENSCLAG00000009547) #24	SLC16A12 (ENSCLAG00000008868) #25	ENSCLAG00000009282 #26	ENSCLAG00000008375 #27	IFIT2 (ENSCLAG00000009587) #28	LIPA (ENSCLAG00000015247) #29	CH25H (ENSCLAG00000011191) #30	FAS (ENSCLAG00000010233) #31	ACTA2 (ENSCLAG00000011268) #32	STAMBPL1 (ENSCLAG00000012073) #33	ANKRD22 (ENSCLAG00000013284) #34	LIPM (ENSCLAG00000009261) #35	LIPN (ENSCLAG00000012833) #36	LIPK (ENSCLAG00000009773) #37
Degu	MODERN SPECIES	87	KIF11 (ENSODEG00000006812) #10	IDE (ENSODEG00000005398) #11	ENSODEG00000005936	MARCHF5 (ENSODEG00000004219) #12	ENSODEG00000004464	CPEB3 (ENSODEG00000004591) #13	ENSODEG00000005031	BTAF1 (ENSODEG00000005172) #14	TNKS2 (ENSODEG00000004816) #15	PPP1R3C (ENSODEG00000006013) #17	HECTD2 (ENSODEG00000004980) #18	ENSODEG00000005047	PCGF5 (ENSODEG00000004787) #19	ANKRD1 (ENSODEG00000005129) #20	ENSODEG00000004530 #21	HTR7 (ENSODEG00000004910) #22	ENSODEG00000019106	KIF20B (ENSODEG00000005304) #23	ENSODEG00000004557	ENSODEG00000019069	PANK1 (ENSODEG00000006515) #24	SLC16A12 (ENSODEG00000006954) #25	ENSODEG00000006311	LIPA (ENSODEG00000005659) #29	ENSODEG00000005184	ACTA2 (ENSODEG00000005541) #32	ENSODEG00000005966 #33	ANKRD22 (ENSODEG00000006197) #34	LIPM (ENSODEG00000004722) #35	LIPN (ENSODEG00000005009) #36	LIPK (ENSODEG00000004941) #37
Guinea pig	MODERN SPECIES	137	ENSCPOG00000014755	SDE2 (ENSCPOG00000014756)	ENSCPOG00000025231	ENSCPOG00000039202	ACBD3 (ENSCPOG00000007184)	LIN9 (ENSCPOG00000015642)	PARP1 (ENSCPOG00000015643)	STUM (ENSCPOG00000031019)	ITPKB (ENSCPOG00000013483)	RD3 (ENSCPOG00000022572)	PPP1R3C (ENSCPOG00000038237) #17	HECTD2 (ENSCPOG00000008922) #18	PCGF5 (ENSCPOG00000013156) #19	ANKRD1 (ENSCPOG00000002565) #20	RPP30 (ENSCPOG00000033174) #21	HTR7 (ENSCPOG00000007482) #22
Naked mole-rat female	MODERN SPECIES	4	KIF11 (ENSHGLG00000014395) #10	IDE (ENSHGLG00000012665) #11	MARCH5 (ENSHGLG00000044946) #12	CPEB3 (ENSHGLG00000014022) #13	BTAF1 (ENSHGLG00000010425) #14	FGFBP3 (ENSHGLG00000046261)	TNKS2 (ENSHGLG00000018423) #15	PPP1R3C (ENSHGLG00000045942) #17	ENSHGLG00000033981	HECTD2 (ENSHGLG00000013810) #18	PCGF5 (ENSHGLG00000016348) #19	ENSHGLG00000047830	ENSHGLG00000016315	ENSHGLG00000016279 #20	ENSHGLG00000013072 #21	ENSHGLG00000011172 #22	ENSHGLG00000037303	ENSHGLG00000041517	ENSHGLG00000012239	ENSHGLG00000020968	ENSHGLG00000010782 #23	ENSHGLG00000043314	PANK1 (ENSHGLG00000010521) #24	SLC16A12 (ENSHGLG00000007331) #25	IFIT5 (ENSHGLG00000043608) ##28	ENSHGLG00000012010 #27	ENSHGLG00000011005 #26	IFIT3 (ENSHGLG00000049612) ##28	ENSHGLG00000039997	IFIT2 (ENSHGLG00000009880) #28	ENSHGLG00000049191 #29