Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000154372.b	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000166824.c	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.c.a #28	ENSGT00950000182946.d #31	ENSGT00950000182946.c.b.b #32	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a	ENSGT00940000153710.b	ENSGT00390000009005	ENSGT00940000156860
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000154372.b	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.c.a #28	ENSGT00950000182946.d.t #29	ENSGT00950000182946.d.s #31	ENSGT00950000182946.c.b.b #32	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00940000153661.b.b	ENSGT00570000079168.b.a #37	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b.l
Marmotini	ANCESTRAL SPECIES	16	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000154372.b	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.c.a #28	ENSGT00950000182946.d.t #29	ENSGT00950000182946.d.s #31	ENSGT00950000182946.c.b.b #32	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00940000153661.b.b	ENSGT00570000079168.b.a #37	ENSGT00940000160819	ENSGT00390000003133	ENSGT00390000000854.c.b.l
Marmotini_b	ANCESTRAL SPECIES	136	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000154372.b	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000160856	ENSGT00390000017405	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22
Squirrel	MODERN SPECIES	201	ENSSTOG00000030502 #7	HHEX (ENSSTOG00000006255) #8	KIF11 (ENSSTOG00000006209) #9	ENSSTOG00000024075 #10	IDE (ENSSTOG00000020385) #11	ENSSTOG00000025613 #12	MARCHF5 (ENSSTOG00000005998) #13	CPEB3 (ENSSTOG00000028061) #14	BTAF1 (ENSSTOG00000008677) #15	TNKS2 (ENSSTOG00000002349) #16	PPP1R3C (ENSSTOG00000025781) #17	HECTD2 (ENSSTOG00000009022) #18	PCGF5 (ENSSTOG00000009179) #19	ANKRD1 (ENSSTOG00000009160) #20	RPP30 (ENSSTOG00000027002) #21	HTR7 (ENSSTOG00000028466) #22	ENSSTOG00000033664 #23	ENSSTOG00000027065 #24	KIF20B (ENSSTOG00000012892) #25	PANK1 (ENSSTOG00000022951) #26	SLC16A12 (ENSSTOG00000009614) #27	IFIT5 (ENSSTOG00000028876) #28	ENSSTOG00000024733 #29	ENSSTOG00000030296 #30	ENSSTOG00000031302 #31	IFIT3 (ENSSTOG00000013100) #32	IFIT2 (ENSSTOG00000022564) #33	ENSSTOG00000026437 #34	LIPA (ENSSTOG00000023070) #35	CH25H (ENSSTOG00000013092) #36	GPRIN2 (ENSSTOG00000005918) #37
Arctic ground squirrel	MODERN SPECIES	184	EXOC6 (ENSUPAG00010011855)	ENSUPAG00010011848	KIF11 (ENSUPAG00010011823) #9	IDE (ENSUPAG00010011780) #11	MARCHF5 (ENSUPAG00010011762) #13	CPEB3 (ENSUPAG00010011729) #14	BTAF1 (ENSUPAG00010011669) #15	FGFBP3 (ENSUPAG00010011663)	TNKS2 (ENSUPAG00010011590) #16	PPP1R3C (ENSUPAG00010011587) #17	HECTD2 (ENSUPAG00010011490) #18	PCGF5 (ENSUPAG00010011353) #19	ENSUPAG00010011348	ANKRD1 (ENSUPAG00010011335) #20	RPP30 (ENSUPAG00010011317) #21	HTR7 (ENSUPAG00010011303) #22
Alpin marmot	MODERN SPECIES	66	EXOC6 (ENSMMMG00000014609)	HHEX (ENSMMMG00000014588) #8	KIF11 (ENSMMMG00000014562) #9	IDE (ENSMMMG00000012810) #11	ENSMMMG00000012791 ##12	MARCHF5 (ENSMMMG00000012751) #13	CPEB3 (ENSMMMG00000012583) #14	BTAF1 (ENSMMMG00000012536) #15	TNKS2 (ENSMMMG00000012490) #16	PPP1R3C (ENSMMMG00000012486) #17	HECTD2 (ENSMMMG00000012452) #18	PCGF5 (ENSMMMG00000012341) #19	ENSMMMG00000012338	ANKRD1 (ENSMMMG00000012324) #20	RPP30 (ENSMMMG00000012309) #21	HTR7 (ENSMMMG00000012295) #22	ENSMMMG00000012292	ENSMMMG00000012290	ENSMMMG00000012283	KIF20B (ENSMMMG00000012202) #25	PANK1 (ENSMMMG00000012185) #26	SLC16A12 (ENSMMMG00000012174) #27	IFIT5 (ENSMMMG00000012170) #28	IFIT1B (ENSMMMG00000012141) #29	IFIT3 (ENSMMMG00000012138) #32	IFIT2 (ENSMMMG00000012130) #34	ENSMMMG00000012079 #34	LIPA (ENSMMMG00000012074) #35	CH25H (ENSMMMG00000012067) #36	ENSMMMG00000012060	GPRIN2 (ENSMMMG00000012057) #37
Hystricomorpha	ANCESTRAL SPECIES	1	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000154372.b	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000166824.c	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.c.a #28	ENSGT00950000182946.d.r #31	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a	ENSGT00940000153710.b	ENSGT00390000009005	ENSGT00940000156860	ENSGT00940000161695
Hystricomorpha_a	ANCESTRAL SPECIES	3	ENSGT00800000124060.B	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.c.a #28	ENSGT00950000182946.d.r #31	ENSGT00950000182946.c.b.b #32	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a	ENSGT00940000153710.b	ENSGT00390000009005	ENSGT00940000156860	ENSGT00940000161695
Hystricomorpha_b	ANCESTRAL SPECIES	72	ENSGT00800000124060.B	ENSGT00800000124060.A.b	ENSGT00390000005739.a.b	ENSGT00940000161748 #8	ENSGT00940000155921 #9	ENSGT00940000155780 #11	ENSGT00390000009948.c #13	ENSGT00940000158949 #14	ENSGT00940000157500 #15	ENSGT00940000159911 #16	ENSGT00940000155648.B #17	ENSGT00940000157750 #18	ENSGT00940000155896 #19	ENSGT00940000153956.a #20	ENSGT00390000000883 #21	ENSGT01010000222287.B.a.a.a.a #22	ENSGT00940000155989 #25	ENSGT00940000157373 #26	ENSGT00940000156169 #27	ENSGT00950000182946.d.q #31	ENSGT00950000182946.d.r #31	ENSGT00950000182946.c.b.a #34	ENSGT00940000154696 #35	ENSGT00940000162142 #36	ENSGT00950000183126.b.b	ENSGT00940000154148.a.a	ENSGT00940000153710.b	ENSGT00390000009005	ENSGT00940000156860	ENSGT00940000161695	ENSGT00940000160031
Long-tailed chinchilla	MODERN SPECIES	132	CYP26C1 (ENSCLAG00000010270)	EXOC6 (ENSCLAG00000008310)	HHEX (ENSCLAG00000012119) #8	KIF11 (ENSCLAG00000013622) #9	IDE (ENSCLAG00000013467) #11	MARCHF5 (ENSCLAG00000013192) #13	CPEB3 (ENSCLAG00000011817) #14	BTAF1 (ENSCLAG00000012888) #15	TNKS2 (ENSCLAG00000013558) #16	ENSCLAG00000010844	PPP1R3C (ENSCLAG00000012433) #17	ENSCLAG00000012695 #18	PCGF5 (ENSCLAG00000013777) #19	ANKRD1 (ENSCLAG00000009887) #20	RPP30 (ENSCLAG00000008595) #21	HTR7 (ENSCLAG00000011360) #22	KIF20B (ENSCLAG00000008733) #25	PANK1 (ENSCLAG00000009547) #26	SLC16A12 (ENSCLAG00000008868) #27	ENSCLAG00000009282 #31	ENSCLAG00000008375 #31	IFIT2 (ENSCLAG00000009587) #34	LIPA (ENSCLAG00000015247) #35	CH25H (ENSCLAG00000011191) #36	FAS (ENSCLAG00000010233)	ACTA2 (ENSCLAG00000011268)	STAMBPL1 (ENSCLAG00000012073)	ANKRD22 (ENSCLAG00000013284)	LIPM (ENSCLAG00000009261)	LIPN (ENSCLAG00000012833)	LIPK (ENSCLAG00000009773)
Degu	MODERN SPECIES	87	KIF11 (ENSODEG00000006812) #9	IDE (ENSODEG00000005398) #11	ENSODEG00000005936	MARCHF5 (ENSODEG00000004219) #13	ENSODEG00000004464	CPEB3 (ENSODEG00000004591) #14	ENSODEG00000005031	BTAF1 (ENSODEG00000005172) #15	TNKS2 (ENSODEG00000004816) #16	PPP1R3C (ENSODEG00000006013) #17	HECTD2 (ENSODEG00000004980) #18	ENSODEG00000005047	PCGF5 (ENSODEG00000004787) #19	ANKRD1 (ENSODEG00000005129) #20	ENSODEG00000004530 #21	HTR7 (ENSODEG00000004910) #22	ENSODEG00000019106	KIF20B (ENSODEG00000005304) #25	ENSODEG00000004557	ENSODEG00000019069	PANK1 (ENSODEG00000006515) #26	SLC16A12 (ENSODEG00000006954) #27	ENSODEG00000006311	LIPA (ENSODEG00000005659) #35	ENSODEG00000005184	ACTA2 (ENSODEG00000005541)	ENSODEG00000005966	ANKRD22 (ENSODEG00000006197)	LIPM (ENSODEG00000004722)	LIPN (ENSODEG00000005009)	LIPK (ENSODEG00000004941)
Guinea pig	MODERN SPECIES	137	ENSCPOG00000014755	SDE2 (ENSCPOG00000014756)	ENSCPOG00000025231	ENSCPOG00000039202	ACBD3 (ENSCPOG00000007184)	LIN9 (ENSCPOG00000015642)	PARP1 (ENSCPOG00000015643)	STUM (ENSCPOG00000031019)	ITPKB (ENSCPOG00000013483)	RD3 (ENSCPOG00000022572)	PPP1R3C (ENSCPOG00000038237) #17	HECTD2 (ENSCPOG00000008922) #18	PCGF5 (ENSCPOG00000013156) #19	ANKRD1 (ENSCPOG00000002565) #20	RPP30 (ENSCPOG00000033174) #21	HTR7 (ENSCPOG00000007482) #22
Naked mole-rat female	MODERN SPECIES	4	KIF11 (ENSHGLG00000014395) #9	IDE (ENSHGLG00000012665) #11	MARCH5 (ENSHGLG00000044946) #13	CPEB3 (ENSHGLG00000014022) #14	BTAF1 (ENSHGLG00000010425) #15	FGFBP3 (ENSHGLG00000046261)	TNKS2 (ENSHGLG00000018423) #16	PPP1R3C (ENSHGLG00000045942) #17	ENSHGLG00000033981	HECTD2 (ENSHGLG00000013810) #18	PCGF5 (ENSHGLG00000016348) #19	ENSHGLG00000047830	ENSHGLG00000016315	ENSHGLG00000016279 #20	ENSHGLG00000013072 #21	ENSHGLG00000011172 #22	ENSHGLG00000037303	ENSHGLG00000041517	ENSHGLG00000012239	ENSHGLG00000020968	ENSHGLG00000010782 #25	ENSHGLG00000043314	PANK1 (ENSHGLG00000010521) #26	SLC16A12 (ENSHGLG00000007331) #27	IFIT5 (ENSHGLG00000043608) #28	ENSHGLG00000012010 #31	ENSHGLG00000011005 #31	IFIT3 (ENSHGLG00000049612) #32	ENSHGLG00000039997	IFIT2 (ENSHGLG00000009880) #34	ENSHGLG00000049191 #35