Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000159794 #7	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.g.b #10	ENSGT00950000183063.c.b.a.g.a #11	ENSGT00950000183063.c.b.a.h ##10	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000169419	ENSGT00940000162212 #30	ENSGT00940000162129.d.s.b #31	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000160041	ENSGT00940000159794 #7	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.g.b #10	ENSGT00950000183063.c.b.a.g.a #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000169419	ENSGT00940000162212 #30	ENSGT00940000162129.d.s.b #31	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000160041	ENSGT00940000159794 #7	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.g.b #10	ENSGT00950000183063.c.b.a.g.a.c #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162129.d.t ##28	ENSGT00940000162212 #30	ENSGT00940000162129.d.s.b #31	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872
Alpin marmot	MODERN SPECIES	8	CHRND (ENSMMMG00000002047) #7	PRSS56 (ENSMMMG00000002024) #8	ENSMMMG00000002016 #9	ENSMMMG00000001927 #10	ENSMMMG00000001904 #11	ENSMMMG00000001848 #12	DIS3L2 (ENSMMMG00000001761) #13	NPPC (ENSMMMG00000001745) #14	COPS7B (ENSMMMG00000001727) #15	PDE6D (ENSMMMG00000001702) #16	NMUR1 (ENSMMMG00000001655) #17	NCL (ENSMMMG00000001601) #18	B3GNT7 (ENSMMMG00000001597) #19	ARMC9 (ENSMMMG00000001453) #20	ENSMMMG00000001440 #21	HTR2B (ENSMMMG00000001431) #22	PSMD1 (ENSMMMG00000001400) #23	ENSMMMG00000001341 #24	GPR55 (ENSMMMG00000001312) #25	ITM2C (ENSMMMG00000001305) #26	CAB39 (ENSMMMG00000001293) #27	ENSMMMG00000001285 #28	ENSMMMG00000001250 #29	ENSMMMG00000001242 #30	ENSMMMG00000001221 #31	ENSMMMG00000001201 #32	ENSMMMG00000001172 #33	ENSMMMG00000001162 #34	SLC16A14 (ENSMMMG00000001146) #35	FBXO36 (ENSMMMG00000001134) #36	TRIP12 (ENSMMMG00000000942) #37
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT00940000160041	ENSGT00940000159794 #7	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.g.b #10	ENSGT00950000183063.c.b.a.g.a.c #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162129.d.t ##28	ENSGT00940000162212 #30	ENSGT00940000162129.d.s.b #31	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872
Arctic ground squirrel	MODERN SPECIES	169						DIS3L2 (ENSUPAG00010005084) #13	ENSUPAG00010005078	NPPC (ENSUPAG00010005072) #14	COPS7B (ENSUPAG00010005061) #15	PDE6D (ENSUPAG00010005053) #16	PTMA (ENSUPAG00010005034)	NMUR1 (ENSUPAG00010005026) #17	NCL (ENSUPAG00010005009) #18	B3GNT7 (ENSUPAG00010005006) #19	ARMC9 (ENSUPAG00010004958) #20	HTR2B (ENSUPAG00010004952) #22	PSMD1 (ENSUPAG00010004890) #23	C2orf72 (ENSUPAG00010004885)	SPATA3 (ENSUPAG00010004876) #24	GPR55 (ENSUPAG00010004871) #25	ITM2C (ENSUPAG00010004854) #26	CAB39 (ENSUPAG00010004840) #27	ENSUPAG00010004832 #28	ENSUPAG00010004816 #30	ENSUPAG00010004810 #31	ENSUPAG00010004804 #31	ENSUPAG00010004794 #33	ENSUPAG00010004788 #34	SLC16A14 (ENSUPAG00010004779) #35	FBXO36 (ENSUPAG00010004773) #36	TRIP12 (ENSUPAG00010004458) #37
Squirrel	MODERN SPECIES	125	PRSS56 (ENSSTOG00000021941) #8	ECEL1 (ENSSTOG00000005389) #9	ENSSTOG00000005478 #10	ENSSTOG00000005441 #11	ENSSTOG00000024416 #11	DIS3L2 (ENSSTOG00000005668) #13	ENSSTOG00000022984	NPPC (ENSSTOG00000027741) #14	COPS7B (ENSSTOG00000022276) #15	PDE6D (ENSSTOG00000006196) #16	ENSSTOG00000034295	NMUR1 (ENSSTOG00000019555) #17	B3GNT7 (ENSSTOG00000000196) #19	ARMC9 (ENSSTOG00000008474) #20	PSMD1 (ENSSTOG00000009344) #23	HTR2B (ENSSTOG00000009378) #22	SPATA3 (ENSSTOG00000031451) #24	ENSSTOG00000023805	GPR55 (ENSSTOG00000002443) #25	ITM2C (ENSSTOG00000009342) #26	CAB39 (ENSSTOG00000028896) #27	ENSSTOG00000025756 ##28	ENSSTOG00000005264 #30	ENSSTOG00000005247 #31	ENSSTOG00000027040 #33	SLC16A14 (ENSSTOG00000023049) #35	FBXO36 (ENSSTOG00000010041) #36	TRIP12 (ENSSTOG00000014937) #37	ENSSTOG00000026552	DNER (ENSSTOG00000013418)	PID1 (ENSSTOG00000012802)
Eurasian red squirrel	MODERN SPECIES	12	PRSS56 (ENSSVLG00005015425) #8	ECEL1 (ENSSVLG00005015117) #9	ENSSVLG00005014965 #10	ENSSVLG00005014847 #11	ENSSVLG00005014716 #11	ENSSVLG00005014581 #11	DIS3L2 (ENSSVLG00005014337) #13	NPPC (ENSSVLG00005014279) #14	COPS7B (ENSSVLG00005014135) #15	PDE6D (ENSSVLG00005014039) #16	ENSSVLG00005013861	NMUR1 (ENSSVLG00005013834) #17	ENSSVLG00005013597 #18	B3GNT7 (ENSSVLG00005013469) #19	ARMC9 (ENSSVLG00005013338) #20	HTR2B (ENSSVLG00005013070) #22	PSMD1 (ENSSVLG00005012861) #23	C2orf72 (ENSSVLG00005012755)	ENSSVLG00005012681 #24	GPR55 (ENSSVLG00005012653) #25	ITM2C (ENSSVLG00005012584) #26	CAB39 (ENSSVLG00005012531) #27	ENSSVLG00005012482	ENSSVLG00005012442 #30	ENSSVLG00005012384 #31	ENSSVLG00005012297 #31	ENSSVLG00005012253 #33	ENSSVLG00005012200 #34	ENSSVLG00005012123 #35	ENSSVLG00005012077	FBXO36 (ENSSVLG00005012002) #36
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000159794 #7	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.h.b ##10	ENSGT00950000183063.c.b.a.h.a.b ##10	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a #23	ENSGT00390000003006	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162212 #30	ENSGT00940000162129.d.t ##28	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872	ENSGT00510000048154
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.h.b ##10	ENSGT00950000183063.c.b.a.h.a.a ##10	ENSGT00950000183063.c.b.a.h.a.b ##10	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a #23	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162212 #30	ENSGT00940000162129.d.t ##28	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000157183.a.b #8	ENSGT00940000157673 #9	ENSGT00950000183063.c.b.a.h.b ##10	ENSGT00950000183063.c.b.a.h.a.a ##10	ENSGT00950000183063.c.b.a.h.a.b ##10	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b	ENSGT01100000263484.A.c.a.a #17	ENSGT00940000157437 #18	ENSGT00940000157606 #19	ENSGT00390000018026 #20	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a #23	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a #25	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162212 #30	ENSGT00940000162129.d.t ##28	ENSGT00940000155124 #33	ENSGT00510000050180 #34	ENSGT00940000160895 #35	ENSGT00390000001015 #36	ENSGT00940000156517 #37	ENSGT00940000158872	ENSGT00510000048154	ENSGT00940000153313.A
Long-tailed chinchilla	MODERN SPECIES	160	ENSCLAG00000008842 #9	ENSCLAG00000009805 #9	ENSCLAG00000013522 ##10	ENSCLAG00000007115 ##10	ENSCLAG00000008695 ##10	DIS3L2 (ENSCLAG00000010200) #13	NPPC (ENSCLAG00000014093) #14	COPS7B (ENSCLAG00000009412) #15	ENSCLAG00000011106 #16	ENSCLAG00000014992	NMUR1 (ENSCLAG00000011387) #17	NCL (ENSCLAG00000013080) #18	B3GNT7 (ENSCLAG00000018090) #19	ARMC9 (ENSCLAG00000014505) #20	PSMD1 (ENSCLAG00000009721) #23	HTR2B (ENSCLAG00000011693) #22	SPATA3 (ENSCLAG00000013092) #24	GPR55 (ENSCLAG00000014005) #25	ITM2C (ENSCLAG00000006596) #26	CAB39 (ENSCLAG00000007339) #27	ENSCLAG00000012838 #30	ENSCLAG00000012221 ##28	ENSCLAG00000013705 #33	ENSCLAG00000011459	ENSCLAG00000011634 #34	SLC16A14 (ENSCLAG00000008363) #35	FBXO36 (ENSCLAG00000009490) #36	ENSCLAG00000006844 #37	DNER (ENSCLAG00000008650)	PID1 (ENSCLAG00000010161)	SPHKAP (ENSCLAG00000014052)
Degu	MODERN SPECIES	130	ECEL1 (ENSODEG00000007457) #9	ENSODEG00000011365 ##10	ENSODEG00000008145 ##10	ENSODEG00000007325 ##10	ENSODEG00000007255	DIS3L2 (ENSODEG00000007857) #13	ENSODEG00000019419	NPPC (ENSODEG00000007066) #14	COPS7B (ENSODEG00000006886) #15	ENSODEG00000006860 #16	ENSODEG00000007492	NMUR1 (ENSODEG00000006998) #17	ENSODEG00000007803 #18	B3GNT7 (ENSODEG00000008876) #19	ARMC9 (ENSODEG00000008401) #20	HTR2B (ENSODEG00000007544) #22	ENSODEG00000006511 #23	SPATA3 (ENSODEG00000006991) #24	ENSODEG00000019367	ITM2C (ENSODEG00000007143) #26	CAB39 (ENSODEG00000006973) #27	ENSODEG00000006353 #30	ENSODEG00000010013 ##28	ENSODEG00000007283 #33	SLC16A14 (ENSODEG00000007138) #35	TRIP12 (ENSODEG00000009098) #37	ENSODEG00000007427	DNER (ENSODEG00000006981)	PID1 (ENSODEG00000008905)
Guinea pig	MODERN SPECIES	13	CHRND (ENSCPOG00000005665) #7	PRSS56 (ENSCPOG00000038726) #8	ECEL1 (ENSCPOG00000004617) #9	ENSCPOG00000012222 ##10	ENSCPOG00000025911 ##10	DIS3L2 (ENSCPOG00000005205) #13	NPPC (ENSCPOG00000027589) #14	COPS7B (ENSCPOG00000020577) #15	PDE6D (ENSCPOG00000037612) #16	ENSCPOG00000022634	ENSCPOG00000005181 #17	NCL (ENSCPOG00000001034) #18	B3GNT7 (ENSCPOG00000002351) #19	ARMC9 (ENSCPOG00000008938) #20	PSMD1 (ENSCPOG00000000431) #23	HTR2B (ENSCPOG00000000433) #22	SPATA3 (ENSCPOG00000006558) #24	GPR55 (ENSCPOG00000004832) #25	ITM2C (ENSCPOG00000012713) #26	CAB39 (ENSCPOG00000032166) #27	ENSCPOG00000038210 #30	ENSCPOG00000010544 ##28	ENSCPOG00000025399 #33	ENSCPOG00000020462 #34	SLC16A14 (ENSCPOG00000034941) #35	FBXO36 (ENSCPOG00000025378) #36	TRIP12 (ENSCPOG00000007990) #37	DNER (ENSCPOG00000011551)	PID1 (ENSCPOG00000037556)	SPHKAP (ENSCPOG00000009872)	DAW1 (ENSCPOG00000000332)
Naked mole-rat female	MODERN SPECIES	17	PRSS56 (ENSHGLG00000004901) #8	ECEL1 (ENSHGLG00000004027) #9	ENSHGLG00000003716 ##10	ENSHGLG00000003323 ##10	ENSHGLG00000002859 ##10	ENSHGLG00000020731	DIS3L2 (ENSHGLG00000002429) #13	NPPC (ENSHGLG00000002343) #14	ENSHGLG00000002311 #15	PDE6D (ENSHGLG00000001979) #16	ENSHGLG00000001587	ENSHGLG00000001426	ENSHGLG00000002031 #18	B3GNT7 (ENSHGLG00000035064) #19	ARMC9 (ENSHGLG00000001678) #20	HTR2B (ENSHGLG00000001546) #22	PSMD1 (ENSHGLG00000003111) #23	C2orf72 (ENSHGLG00000002913)	SPATA3 (ENSHGLG00000002652) #24	GPR55 (ENSHGLG00000002371) #25	ITM2C (ENSHGLG00000003561) #26	CAB39 (ENSHGLG00000035528) #27	SP100 (ENSHGLG00000003347) #30	ENSHGLG00000032383 ##28	SLC16A14 (ENSHGLG00000002999) #35	FBXO36 (ENSHGLG00000002884) #36	TRIP12 (ENSHGLG00000008889) #37	ENSHGLG00000020453	ENSHGLG00000006168	PID1 (ENSHGLG00000040359)	ENSHGLG00000042790