Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000159794	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.g.b ##9	ENSGT00950000183063.c.b.a.g.a ##9	ENSGT00950000183063.c.b.a.h #9	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006 #24	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000169419	ENSGT00940000162212 #29	ENSGT00940000162129.d.s.b ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000159794	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.h.b #9	ENSGT00950000183063.c.b.a.h.a.b #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a ##23	ENSGT00390000003006 #24	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000162212 #29	ENSGT00940000162129.d.t ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35	ENSGT00510000048154 #36
Naked mole-rat female	MODERN SPECIES	17	PRSS56 (ENSHGLG00000004901) #7	ECEL1 (ENSHGLG00000004027) #8	ENSHGLG00000003716 #9	ENSHGLG00000003323 #10	ENSHGLG00000002859 #11	ENSHGLG00000020731 #12	DIS3L2 (ENSHGLG00000002429) #13	NPPC (ENSHGLG00000002343) #14	ENSHGLG00000002311 #15	PDE6D (ENSHGLG00000001979) #16	ENSHGLG00000001587 #17	ENSHGLG00000001426 #18	ENSHGLG00000002031 #19	B3GNT7 (ENSHGLG00000035064) #20	ARMC9 (ENSHGLG00000001678) #21	HTR2B (ENSHGLG00000001546) #22	PSMD1 (ENSHGLG00000003111) #23	C2orf72 (ENSHGLG00000002913) #24	SPATA3 (ENSHGLG00000002652) #25	GPR55 (ENSHGLG00000002371) #26	ITM2C (ENSHGLG00000003561) #27	CAB39 (ENSHGLG00000035528) #28	SP100 (ENSHGLG00000003347) #29	ENSHGLG00000032383 #30	SLC16A14 (ENSHGLG00000002999) #31	FBXO36 (ENSHGLG00000002884) #32	TRIP12 (ENSHGLG00000008889) #33	ENSHGLG00000020453 #34	ENSHGLG00000006168 #35	PID1 (ENSHGLG00000040359) #36	ENSHGLG00000042790 #37
Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.h.b #9	ENSGT00950000183063.c.b.a.h.a.a ##9	ENSGT00950000183063.c.b.a.h.a.b #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a ##23	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000162212 #29	ENSGT00940000162129.d.t ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35	ENSGT00510000048154 #36	ENSGT00940000153313.A
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.h.b #9	ENSGT00950000183063.c.b.a.h.a.a ##9	ENSGT00950000183063.c.b.a.h.a.b #11	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT00940000153386.A.b #23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a ##23	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000162212 #29	ENSGT00940000162129.d.t ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35	ENSGT00510000048154 #36	ENSGT00940000153313.A
Long-tailed chinchilla	MODERN SPECIES	160	ENSCLAG00000008842 #8	ENSCLAG00000009805 #8	ENSCLAG00000013522 #9	ENSCLAG00000007115 ##9	ENSCLAG00000008695 ##9	DIS3L2 (ENSCLAG00000010200) #13	NPPC (ENSCLAG00000014093) #14	COPS7B (ENSCLAG00000009412) #15	ENSCLAG00000011106 #16	ENSCLAG00000014992	NMUR1 (ENSCLAG00000011387)	NCL (ENSCLAG00000013080) #19	B3GNT7 (ENSCLAG00000018090) #20	ARMC9 (ENSCLAG00000014505) #21	PSMD1 (ENSCLAG00000009721) #23	HTR2B (ENSCLAG00000011693) #22	SPATA3 (ENSCLAG00000013092) #25	GPR55 (ENSCLAG00000014005) #26	ITM2C (ENSCLAG00000006596) #27	CAB39 (ENSCLAG00000007339) #28	ENSCLAG00000012838 #29	ENSCLAG00000012221 ##30	ENSCLAG00000013705	ENSCLAG00000011459	ENSCLAG00000011634	SLC16A14 (ENSCLAG00000008363) #31	FBXO36 (ENSCLAG00000009490) #32	ENSCLAG00000006844 #33	DNER (ENSCLAG00000008650) #35	PID1 (ENSCLAG00000010161) #36	SPHKAP (ENSCLAG00000014052)
Degu	MODERN SPECIES	130	ECEL1 (ENSODEG00000007457) #8	ENSODEG00000011365 #9	ENSODEG00000008145 ##9	ENSODEG00000007325 #11	ENSODEG00000007255	DIS3L2 (ENSODEG00000007857) #13	ENSODEG00000019419	NPPC (ENSODEG00000007066) #14	COPS7B (ENSODEG00000006886) #15	ENSODEG00000006860 #16	ENSODEG00000007492 ##17	NMUR1 (ENSODEG00000006998)	ENSODEG00000007803 #19	B3GNT7 (ENSODEG00000008876) #20	ARMC9 (ENSODEG00000008401) #21	HTR2B (ENSODEG00000007544) #22	ENSODEG00000006511 ##23	SPATA3 (ENSODEG00000006991) #25	ENSODEG00000019367	ITM2C (ENSODEG00000007143) #27	CAB39 (ENSODEG00000006973) #28	ENSODEG00000006353 #29	ENSODEG00000010013 ##30	ENSODEG00000007283	SLC16A14 (ENSODEG00000007138) #31	TRIP12 (ENSODEG00000009098) #33	ENSODEG00000007427	DNER (ENSODEG00000006981) #35	PID1 (ENSODEG00000008905) #36
Guinea pig	MODERN SPECIES	13	CHRND (ENSCPOG00000005665)	PRSS56 (ENSCPOG00000038726) #7	ECEL1 (ENSCPOG00000004617) #8	ENSCPOG00000012222 ##9	ENSCPOG00000025911 #11	DIS3L2 (ENSCPOG00000005205) #13	NPPC (ENSCPOG00000027589) #14	COPS7B (ENSCPOG00000020577) #15	PDE6D (ENSCPOG00000037612) #16	ENSCPOG00000022634	ENSCPOG00000005181	NCL (ENSCPOG00000001034) #19	B3GNT7 (ENSCPOG00000002351) #20	ARMC9 (ENSCPOG00000008938) #21	PSMD1 (ENSCPOG00000000431) #23	HTR2B (ENSCPOG00000000433) #22	SPATA3 (ENSCPOG00000006558) #25	GPR55 (ENSCPOG00000004832) #26	ITM2C (ENSCPOG00000012713) #27	CAB39 (ENSCPOG00000032166) #28	ENSCPOG00000038210 #29	ENSCPOG00000010544 ##30	ENSCPOG00000025399	ENSCPOG00000020462	SLC16A14 (ENSCPOG00000034941) #31	FBXO36 (ENSCPOG00000025378) #32	TRIP12 (ENSCPOG00000007990) #33	DNER (ENSCPOG00000011551) #35	PID1 (ENSCPOG00000037556) #36	SPHKAP (ENSCPOG00000009872)	DAW1 (ENSCPOG00000000332)
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000160041	ENSGT00940000159794	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.g.b ##9	ENSGT00950000183063.c.b.a.g.a ##9	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006 #24	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000169419	ENSGT00940000162212 #29	ENSGT00940000162129.d.s.b ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000160041	ENSGT00940000159794	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.g.b ##9	ENSGT00950000183063.c.b.a.g.a.c ##9	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006 #24	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000162129.d.t ##30	ENSGT00940000162212 #29	ENSGT00940000162129.d.s.b ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35
Marmotini_b	ANCESTRAL SPECIES	41	ENSGT00940000160041	ENSGT00940000159794	ENSGT00940000157183.a.b #7	ENSGT00940000157673 #8	ENSGT00950000183063.c.b.a.g.b ##9	ENSGT00950000183063.c.b.a.g.a.c ##9	ENSGT00530000063106.A #13	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.a ##17	ENSGT01100000263484.A.c.a.a	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A #23	ENSGT00390000003006 #24	ENSGT00390000003032 #25	ENSGT01040000240444.A.b.a.a #26	ENSGT00950000183115.a #27	ENSGT00390000004360.a.b.b #28	ENSGT00940000162129.d.t ##30	ENSGT00940000162212 #29	ENSGT00940000162129.d.s.b ##30	ENSGT00940000155124	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015 #32	ENSGT00940000156517 #33	ENSGT00940000158872 #35
Arctic ground squirrel	MODERN SPECIES	169						DIS3L2 (ENSUPAG00010005084) #13	ENSUPAG00010005078	NPPC (ENSUPAG00010005072) #14	COPS7B (ENSUPAG00010005061) #15	PDE6D (ENSUPAG00010005053) #16	PTMA (ENSUPAG00010005034) ##17	NMUR1 (ENSUPAG00010005026)	NCL (ENSUPAG00010005009) #19	B3GNT7 (ENSUPAG00010005006) #20	ARMC9 (ENSUPAG00010004958) #21	HTR2B (ENSUPAG00010004952) #22	PSMD1 (ENSUPAG00010004890) #23	C2orf72 (ENSUPAG00010004885) #24	SPATA3 (ENSUPAG00010004876) #25	GPR55 (ENSUPAG00010004871) #26	ITM2C (ENSUPAG00010004854) #27	CAB39 (ENSUPAG00010004840) #28	ENSUPAG00010004832 ##30	ENSUPAG00010004816 #29	ENSUPAG00010004810 ##30	ENSUPAG00010004804 ##30	ENSUPAG00010004794	ENSUPAG00010004788	SLC16A14 (ENSUPAG00010004779) #31	FBXO36 (ENSUPAG00010004773) #32	TRIP12 (ENSUPAG00010004458) #33
Squirrel	MODERN SPECIES	125	PRSS56 (ENSSTOG00000021941) #7	ECEL1 (ENSSTOG00000005389) #8	ENSSTOG00000005478 ##9	ENSSTOG00000005441 ##9	ENSSTOG00000024416 ##9	DIS3L2 (ENSSTOG00000005668) #13	ENSSTOG00000022984	NPPC (ENSSTOG00000027741) #14	COPS7B (ENSSTOG00000022276) #15	PDE6D (ENSSTOG00000006196) #16	ENSSTOG00000034295 ##17	NMUR1 (ENSSTOG00000019555)	B3GNT7 (ENSSTOG00000000196) #20	ARMC9 (ENSSTOG00000008474) #21	PSMD1 (ENSSTOG00000009344) #23	HTR2B (ENSSTOG00000009378) #22	SPATA3 (ENSSTOG00000031451) #25	ENSSTOG00000023805	GPR55 (ENSSTOG00000002443) #26	ITM2C (ENSSTOG00000009342) #27	CAB39 (ENSSTOG00000028896) #28	ENSSTOG00000025756 ##30	ENSSTOG00000005264 #29	ENSSTOG00000005247 ##30	ENSSTOG00000027040	SLC16A14 (ENSSTOG00000023049) #31	FBXO36 (ENSSTOG00000010041) #32	TRIP12 (ENSSTOG00000014937) #33	ENSSTOG00000026552	DNER (ENSSTOG00000013418) #35	PID1 (ENSSTOG00000012802) #36
Alpin marmot	MODERN SPECIES	8	CHRND (ENSMMMG00000002047)	PRSS56 (ENSMMMG00000002024) #7	ENSMMMG00000002016 #8	ENSMMMG00000001927 ##9	ENSMMMG00000001904 ##9	ENSMMMG00000001848 ##9	DIS3L2 (ENSMMMG00000001761) #13	NPPC (ENSMMMG00000001745) #14	COPS7B (ENSMMMG00000001727) #15	PDE6D (ENSMMMG00000001702) #16	NMUR1 (ENSMMMG00000001655)	NCL (ENSMMMG00000001601) #19	B3GNT7 (ENSMMMG00000001597) #20	ARMC9 (ENSMMMG00000001453) #21	ENSMMMG00000001440	HTR2B (ENSMMMG00000001431) #22	PSMD1 (ENSMMMG00000001400) #23	ENSMMMG00000001341 #25	GPR55 (ENSMMMG00000001312) #26	ITM2C (ENSMMMG00000001305) #27	CAB39 (ENSMMMG00000001293) #28	ENSMMMG00000001285 ##30	ENSMMMG00000001250	ENSMMMG00000001242 #29	ENSMMMG00000001221 ##30	ENSMMMG00000001201 ##30	ENSMMMG00000001172	ENSMMMG00000001162	SLC16A14 (ENSMMMG00000001146) #31	FBXO36 (ENSMMMG00000001134) #32	TRIP12 (ENSMMMG00000000942) #33
Eurasian red squirrel	MODERN SPECIES	12	PRSS56 (ENSSVLG00005015425) #7	ECEL1 (ENSSVLG00005015117) #8	ENSSVLG00005014965 ##9	ENSSVLG00005014847 ##9	ENSSVLG00005014716 ##9	ENSSVLG00005014581 ##9	DIS3L2 (ENSSVLG00005014337) #13	NPPC (ENSSVLG00005014279) #14	COPS7B (ENSSVLG00005014135) #15	PDE6D (ENSSVLG00005014039) #16	ENSSVLG00005013861	NMUR1 (ENSSVLG00005013834)	ENSSVLG00005013597 #19	B3GNT7 (ENSSVLG00005013469) #20	ARMC9 (ENSSVLG00005013338) #21	HTR2B (ENSSVLG00005013070) #22	PSMD1 (ENSSVLG00005012861) #23	C2orf72 (ENSSVLG00005012755) #24	ENSSVLG00005012681 #25	GPR55 (ENSSVLG00005012653) #26	ITM2C (ENSSVLG00005012584) #27	CAB39 (ENSSVLG00005012531) #28	ENSSVLG00005012482	ENSSVLG00005012442 #29	ENSSVLG00005012384 ##30	ENSSVLG00005012297 ##30	ENSSVLG00005012253	ENSSVLG00005012200	ENSSVLG00005012123 #31	ENSSVLG00005012077	FBXO36 (ENSSVLG00005012002) #32