Hystricomorpha_a	ANCESTRAL SPECIES	32	ENSGT00940000157183.a.b	ENSGT00940000157673 #7	ENSGT00950000183063.c.b.a.h.b #8	ENSGT00950000183063.c.b.a.h.a.a #9	ENSGT00950000183063.c.b.a.h.a.b #10	ENSGT00530000063106.A #12	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b #17	ENSGT01100000263484.A.c.a.a #18	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT00940000153386.A.b ##23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a #23	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162212 #28	ENSGT00940000162129.d.t #29	ENSGT00940000155124 #30	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015	ENSGT00940000156517 #32	ENSGT00940000158872 #34	ENSGT00510000048154 #35	ENSGT00940000153313.A
Hystricomorpha_b	ANCESTRAL SPECIES	28	ENSGT00940000157183.a.b	ENSGT00940000157673 #7	ENSGT00950000183063.c.b.a.h.b #8	ENSGT00950000183063.c.b.a.h.a.a #9	ENSGT00950000183063.c.b.a.h.a.b #10	ENSGT00530000063106.A #12	ENSGT00390000015492.B #14	ENSGT00940000157155 #15	ENSGT00390000000263 #16	ENSGT00940000155762.`c.b #17	ENSGT01100000263484.A.c.a.a #18	ENSGT00940000157437 #19	ENSGT00940000157606 #20	ENSGT00390000018026 #21	ENSGT00940000153386.A.b ##23	ENSGT01050000244937.a.b.b #22	ENSGT00940000153386.A.a #23	ENSGT00390000003032 #24	ENSGT01040000240444.A.b.a.a	ENSGT00950000183115.a #26	ENSGT00390000004360.a.b.b #27	ENSGT00940000162212 #28	ENSGT00940000162129.d.t #29	ENSGT00940000155124 #30	ENSGT00510000050180	ENSGT00940000160895 #31	ENSGT00390000001015	ENSGT00940000156517 #32	ENSGT00940000158872 #34	ENSGT00510000048154 #35	ENSGT00940000153313.A
Degu	MODERN SPECIES	130	ECEL1 (ENSODEG00000007457) #7	ENSODEG00000011365 #8	ENSODEG00000008145 #9	ENSODEG00000007325 #10	ENSODEG00000007255 #11	DIS3L2 (ENSODEG00000007857) #12	ENSODEG00000019419 #13	NPPC (ENSODEG00000007066) #14	COPS7B (ENSODEG00000006886) #15	ENSODEG00000006860 #16	ENSODEG00000007492 #17	NMUR1 (ENSODEG00000006998) #18	ENSODEG00000007803 #19	B3GNT7 (ENSODEG00000008876) #20	ARMC9 (ENSODEG00000008401) #21	HTR2B (ENSODEG00000007544) #22	ENSODEG00000006511 #23	SPATA3 (ENSODEG00000006991) #24	ENSODEG00000019367 #25	ITM2C (ENSODEG00000007143) #26	CAB39 (ENSODEG00000006973) #27	ENSODEG00000006353 #28	ENSODEG00000010013 #29	ENSODEG00000007283 #30	SLC16A14 (ENSODEG00000007138) #31	TRIP12 (ENSODEG00000009098) #32	ENSODEG00000007427 #33	DNER (ENSODEG00000006981) #34	PID1 (ENSODEG00000008905) #35
Long-tailed chinchilla	MODERN SPECIES	160	ENSCLAG00000008842 #7	ENSCLAG00000009805 #7	ENSCLAG00000013522 #8	ENSCLAG00000007115 #9	ENSCLAG00000008695 #9	DIS3L2 (ENSCLAG00000010200) #12	NPPC (ENSCLAG00000014093) #14	COPS7B (ENSCLAG00000009412) #15	ENSCLAG00000011106 #16	ENSCLAG00000014992	NMUR1 (ENSCLAG00000011387) #18	NCL (ENSCLAG00000013080) #19	B3GNT7 (ENSCLAG00000018090) #20	ARMC9 (ENSCLAG00000014505) #21	PSMD1 (ENSCLAG00000009721) ##23	HTR2B (ENSCLAG00000011693) #22	SPATA3 (ENSCLAG00000013092) #24	GPR55 (ENSCLAG00000014005)	ITM2C (ENSCLAG00000006596) #26	CAB39 (ENSCLAG00000007339) #27	ENSCLAG00000012838 #28	ENSCLAG00000012221 #29	ENSCLAG00000013705 #30	ENSCLAG00000011459	ENSCLAG00000011634	SLC16A14 (ENSCLAG00000008363) #31	FBXO36 (ENSCLAG00000009490)	ENSCLAG00000006844 #32	DNER (ENSCLAG00000008650) #34	PID1 (ENSCLAG00000010161) #35	SPHKAP (ENSCLAG00000014052)
Guinea pig	MODERN SPECIES	13	CHRND (ENSCPOG00000005665)	PRSS56 (ENSCPOG00000038726)	ECEL1 (ENSCPOG00000004617) #7	ENSCPOG00000012222 #9	ENSCPOG00000025911 #10	DIS3L2 (ENSCPOG00000005205) #12	NPPC (ENSCPOG00000027589) #14	COPS7B (ENSCPOG00000020577) #15	PDE6D (ENSCPOG00000037612) #16	ENSCPOG00000022634	ENSCPOG00000005181 #18	NCL (ENSCPOG00000001034) #19	B3GNT7 (ENSCPOG00000002351) #20	ARMC9 (ENSCPOG00000008938) #21	PSMD1 (ENSCPOG00000000431) ##23	HTR2B (ENSCPOG00000000433) #22	SPATA3 (ENSCPOG00000006558) #24	GPR55 (ENSCPOG00000004832)	ITM2C (ENSCPOG00000012713) #26	CAB39 (ENSCPOG00000032166) #27	ENSCPOG00000038210 #28	ENSCPOG00000010544 #29	ENSCPOG00000025399 #30	ENSCPOG00000020462	SLC16A14 (ENSCPOG00000034941) #31	FBXO36 (ENSCPOG00000025378)	TRIP12 (ENSCPOG00000007990) #32	DNER (ENSCPOG00000011551) #34	PID1 (ENSCPOG00000037556) #35	SPHKAP (ENSCPOG00000009872)	DAW1 (ENSCPOG00000000332)