Mus	ANCESTRAL SPECIES	16	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #23	ENSGT00550000075134 #24	ENSGT00950000182993.A.a #25	ENSGT00390000012434 #26	ENSGT00390000007212 #27	ENSGT00940000158588 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00390000002629 #32	ENSGT00940000155916	ENSGT00940000161482	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #23	ENSGT00550000075134 #24	ENSGT00950000182993.A.a #25	ENSGT00390000012434.k #26	ENSGT00390000007212 #27	ENSGT00940000158588 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00390000002629 #32	ENSGT00940000155916	ENSGT00940000161482	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #23	ENSGT00550000075134 #24	ENSGT00950000182993.A.a #25	ENSGT00390000012434.k #26	ENSGT00390000007212 #27	ENSGT00940000158588 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00390000002629 #32	ENSGT00940000155916	ENSGT00940000161482	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #23	ENSGT00550000075134 #24	ENSGT00950000182993.A.a #25	ENSGT00390000012434.k #26	ENSGT00390000007212 #27	ENSGT00940000158588 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #31	ENSGT00390000002629 #32	ENSGT00940000161482	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b	ENSGT00940000159248
Steppe mouse	MODERN SPECIES	2657	Tubb4a (ENSMSIG00000021731) #7	Dennd1c (ENSMSIG00000021743) #8	Crb3 (ENSMSIG00000021794) #9	Slc25a23 (ENSMSIG00000021822) #10	Slc25a41 (ENSMSIG00000021849) #11	Khsrp (ENSMSIG00000021874) #12	Gm17949 (ENSMSIG00000021931) #13	Gtf2f1 (ENSMSIG00000021940) #14	Pspn (ENSMSIG00000021975) #15	Alkbh7 (ENSMSIG00000021986) #16	Clpp (ENSMSIG00000022008) #17	Acer1 (ENSMSIG00000022023) #18	Mllt1 (ENSMSIG00000022050) #19	Acsbg3 (ENSMSIG00000022123) #20	Acsbg2 (ENSMSIG00000022144) #21	Rfx2 (ENSMSIG00000022188) #22	Prr22 (ENSMSIG00000022272) #23	Dus3l (ENSMSIG00000022291) #24	Nrtn (ENSMSIG00000022315) #25	ENSMSIG00000022323 #26	Vmac (ENSMSIG00000022334) #27	Ranbp3 (ENSMSIG00000022350) #28	Catsperd (ENSMSIG00000022478) #29	Lonp1 (ENSMSIG00000022544) #30	ENSMSIG00000022557 #31	ENSMSIG00000022566 #32
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716) #7	MGP_SPRETEiJ_G0022715 #8	Crb3 (MGP_SPRETEiJ_G0022714) #9	Slc25a23 (MGP_SPRETEiJ_G0022713) #10	Slc25a41 (MGP_SPRETEiJ_G0022712) #11	Khsrp (MGP_SPRETEiJ_G0022711) #12	Gtf2f1 (MGP_SPRETEiJ_G0022710) #14	Pspn (MGP_SPRETEiJ_G0022709) #15	Alkbh7 (MGP_SPRETEiJ_G0022708) #16	Clpp (MGP_SPRETEiJ_G0022707) #17	Acer1 (MGP_SPRETEiJ_G0022706) #18	Mllt1 (MGP_SPRETEiJ_G0022705) #19	Acsbg3 (MGP_SPRETEiJ_G0022704) #20	Acsbg2 (MGP_SPRETEiJ_G0022703) #21	Rfx2 (MGP_SPRETEiJ_G0022702) #22	Prr22 (MGP_SPRETEiJ_G0022701) #23	Dus3l (MGP_SPRETEiJ_G0022700) #24	Nrtn (MGP_SPRETEiJ_G0022699) #25	Ndufa11 (MGP_SPRETEiJ_G0022698) #26	Vmac (MGP_SPRETEiJ_G0022697) #27	Ranbp3 (MGP_SPRETEiJ_G0022696) #28	Catsperd (MGP_SPRETEiJ_G0022695) #29	Lonp1 (MGP_SPRETEiJ_G0022694) #30	MGP_SPRETEiJ_G0022693 #31	Micos13 (MGP_SPRETEiJ_G0022692) #32	MGP_SPRETEiJ_G0022691	Safb2 (MGP_SPRETEiJ_G0022690)	Znrf4 (MGP_SPRETEiJ_G0022689)	Ptprs (MGP_SPRETEiJ_G0022688)	Kdm4b (MGP_SPRETEiJ_G0022687)
Mouse	MODERN SPECIES	8	Tubb4a (ENSMUSG00000062591) #7	Dennd1c (ENSMUSG00000002668) #8	Crb3 (ENSMUSG00000044279) #9	Slc25a23 (ENSMUSG00000046329) #10	Slc25a41 (ENSMUSG00000011486) #11	Khsrp (ENSMUSG00000007670) #12	Gm17949 (ENSMUSG00000109739) #13	Gtf2f1 (ENSMUSG00000002658) #14	Pspn (ENSMUSG00000002664) #15	Alkbh7 (ENSMUSG00000002661) #16	Clpp (ENSMUSG00000002660) #17	Acer1 (ENSMUSG00000045019) #18	Mllt1 (ENSMUSG00000024212) #19	Acsbg3 (ENSMUSG00000024209) #20	Acsbg2 (ENSMUSG00000024207) #21	Rfx2 (ENSMUSG00000024206) #22	Prr22 (ENSMUSG00000090273) #23	Dus3l (ENSMUSG00000007603) #24	Nrtn (ENSMUSG00000039481) #25	Ndufa11 (ENSMUSG00000002379) #26	Vmac (ENSMUSG00000054723) #27	Ranbp3 (ENSMUSG00000002372) #28	Catsperd (ENSMUSG00000040828) #29	Lonp1 (ENSMUSG00000041168) #30	Rpl36 (ENSMUSG00000057863) ##31	Micos13 (ENSMUSG00000049760) #32	Safb (ENSMUSG00000071054)	Safb2 (ENSMUSG00000042625)	Tincr (ENSMUSG00000110218)	Znrf4 (ENSMUSG00000044526)	Ptprs (ENSMUSG00000013236)
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805) #7	Dennd1c (MGP_CAROLIEiJ_G0021804) #8	Crb3 (MGP_CAROLIEiJ_G0021803) #9	Slc25a23 (MGP_CAROLIEiJ_G0021802) #10	Slc25a41 (MGP_CAROLIEiJ_G0021801) #11	Khsrp (MGP_CAROLIEiJ_G0021800) #12	Gtf2f1 (MGP_CAROLIEiJ_G0021799) #14	Pspn (MGP_CAROLIEiJ_G0021798) #15	Alkbh7 (MGP_CAROLIEiJ_G0021797) #16	Clpp (MGP_CAROLIEiJ_G0021796) #17	Acer1 (MGP_CAROLIEiJ_G0021795) #18	Mllt1 (MGP_CAROLIEiJ_G0021794) #19	Acsbg3 (MGP_CAROLIEiJ_G0021793) #20	Acsbg2 (MGP_CAROLIEiJ_G0021792) #21	Rfx2 (MGP_CAROLIEiJ_G0021791) #22	Prr22 (MGP_CAROLIEiJ_G0021790) #23	Dus3l (MGP_CAROLIEiJ_G0021789) #24	Nrtn (MGP_CAROLIEiJ_G0021788) #25	Ndufa11 (MGP_CAROLIEiJ_G0021787) #26	Vmac (MGP_CAROLIEiJ_G0021786) #27	Ranbp3 (MGP_CAROLIEiJ_G0021785) #28	Catsperd (MGP_CAROLIEiJ_G0021784) #29	Lonp1 (MGP_CAROLIEiJ_G0021783) #30	MGP_CAROLIEiJ_G0021782 #31	Micos13 (MGP_CAROLIEiJ_G0021781) #32	Safb (MGP_CAROLIEiJ_G0021780)	Safb2 (MGP_CAROLIEiJ_G0021779)	Znrf4 (MGP_CAROLIEiJ_G0021778)	Ptprs (MGP_CAROLIEiJ_G0021777)	Kdm4b (MGP_CAROLIEiJ_G0021776)
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794) #7	Dennd1c (MGP_PahariEiJ_G0020793) #8	Crb3 (MGP_PahariEiJ_G0020792) #9	Slc25a23 (MGP_PahariEiJ_G0020791) #10	Slc25a41 (MGP_PahariEiJ_G0020790) #11	Khsrp (MGP_PahariEiJ_G0020789) #12	Gtf2f1 (MGP_PahariEiJ_G0020788) #14	Pspn (MGP_PahariEiJ_G0020787) #15	Alkbh7 (MGP_PahariEiJ_G0020786) #16	Clpp (MGP_PahariEiJ_G0020785) #17	Acer1 (MGP_PahariEiJ_G0020784) #18	Mllt1 (MGP_PahariEiJ_G0020783) #19	Acsbg3 (MGP_PahariEiJ_G0020782) #20	Acsbg2 (MGP_PahariEiJ_G0020781) #21	Rfx2 (MGP_PahariEiJ_G0020780) #22	Prr22 (MGP_PahariEiJ_G0020779) #23	Dus3l (MGP_PahariEiJ_G0020778) #24	Nrtn (MGP_PahariEiJ_G0020777) #25	Ndufa11 (MGP_PahariEiJ_G0020776) #26	Vmac (MGP_PahariEiJ_G0020775) #27	Ranbp3 (MGP_PahariEiJ_G0020774) #28	Catsperd (MGP_PahariEiJ_G0020773) #29	Lonp1 (MGP_PahariEiJ_G0020772) #30	MGP_PahariEiJ_G0020771 #31	Micos13 (MGP_PahariEiJ_G0020770) #32	Safb (MGP_PahariEiJ_G0020769)	Safb2 (MGP_PahariEiJ_G0020768)	Znrf4 (MGP_PahariEiJ_G0020767)	Ptprs (MGP_PahariEiJ_G0020766)	Kdm4b (MGP_PahariEiJ_G0020765)