Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34	ENSGT00940000163061 #35
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34	ENSGT00940000163061 #35	ENSGT00940000153617.A.b #36
Long-tailed chinchilla	MODERN SPECIES	202	TUBB4A (ENSCLAG00000008831) #7	DENND1C (ENSCLAG00000012303) #8	ENSCLAG00000014016 #9	SLC25A23 (ENSCLAG00000015826) #10	SLC25A41 (ENSCLAG00000006414) #11	KHSRP (ENSCLAG00000007309) #12	ENSCLAG00000007910 #13	GTF2F1 (ENSCLAG00000008779) #14	PSPN (ENSCLAG00000016653) #15	ALKBH7 (ENSCLAG00000017244) #16	CLPP (ENSCLAG00000009974) #17	ACER1 (ENSCLAG00000011663) #18	MLLT1 (ENSCLAG00000011833) #19	ENSCLAG00000006362 #20	ACSBG2 (ENSCLAG00000007301) #21	RFX2 (ENSCLAG00000008242) #22	RANBP3 (ENSCLAG00000011775) #23	CAPS (ENSCLAG00000013758) #24	VMAC (ENSCLAG00000012168) #25	NDUFA11 (ENSCLAG00000008043) #26	DUS3L (ENSCLAG00000008470) #27	PRR22 (ENSCLAG00000009039) #28	LONP1 (ENSCLAG00000007239) #29	RPL36 (ENSCLAG00000012455) #30	MICOS13 (ENSCLAG00000009496) #31	SAFB (ENSCLAG00000007734) #32	ENSCLAG00000009742 #33	ENSCLAG00000007870 #34	ENSCLAG00000008007 #35	PTPRS (ENSCLAG00000006868) #36	KDM4B (ENSCLAG00000007020) #37
Degu	MODERN SPECIES	91	TUBB4A (ENSODEG00000015772) #7	ENSODEG00000015746 #8	CRB3 (ENSODEG00000015295) #9	SLC25A23 (ENSODEG00000014916) #10	SLC25A41 (ENSODEG00000015990) #11	KHSRP (ENSODEG00000015021) #12	ENSODEG00000015969 #13	GTF2F1 (ENSODEG00000014900) #14	PSPN (ENSODEG00000014761) #15	ALKBH7 (ENSODEG00000015141) #16	CLPP (ENSODEG00000015485) #17	ACER1 (ENSODEG00000015726) #18	MLLT1 (ENSODEG00000014883) #19	ENSODEG00000015920 #20	ENSODEG00000015714 #21	RFX2 (ENSODEG00000015368) #22	RANBP3 (ENSODEG00000015257) #23	CAPS (ENSODEG00000016529) #24	VMAC (ENSODEG00000014819) #25	NDUFA11 (ENSODEG00000015123) #26	NRTN (ENSODEG00000014997) ##15	DUS3L (ENSODEG00000015771) #27	PRR22 (ENSODEG00000015287) #28	LONP1 (ENSODEG00000015069) #29	ENSODEG00000017182 #30	MICOS13 (ENSODEG00000016327) #31	SAFB (ENSODEG00000014838) #32	SAFB2 (ENSODEG00000014751) #33	ENSODEG00000015112 #35	PTPRS (ENSODEG00000015678) #36	KDM4B (ENSODEG00000014383) #37
Guinea pig	MODERN SPECIES	229	ENSCPOG00000022803	TUBB4A (ENSCPOG00000003237) #7	DENND1C (ENSCPOG00000003232) #8	CRB3 (ENSCPOG00000024888) #9	SLC25A23 (ENSCPOG00000011096) #10	SLC25A41 (ENSCPOG00000029988) #11	KHSRP (ENSCPOG00000005140) #12	GTF2F1 (ENSCPOG00000012632) #14	PSPN (ENSCPOG00000038963) #15	ALKBH7 (ENSCPOG00000013958) #16	CLPP (ENSCPOG00000013954) #17	ACER1 (ENSCPOG00000021961) #18	MLLT1 (ENSCPOG00000001260) #19	ENSCPOG00000025754 #20	ENSCPOG00000014317 #21	RFX2 (ENSCPOG00000024260) #22	RANBP3 (ENSCPOG00000021646) #23	CAPS (ENSCPOG00000026058) #24	VMAC (ENSCPOG00000014675) #25	NDUFA11 (ENSCPOG00000019390) #26	ENSCPOG00000037079	ENSCPOG00000037083	NRTN (ENSCPOG00000037952) ##15	DUS3L (ENSCPOG00000021236) #27	PRR22 (ENSCPOG00000031470) #28
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000008762	ENSHGLG00000041462	CD70 (ENSHGLG00000013155)	ENSHGLG00000021141	TNFSF14 (ENSHGLG00000041682)	GPR108 (ENSHGLG00000010354)	TRIP10 (ENSHGLG00000006018)	SH2D3A (ENSHGLG00000030969)	ENSHGLG00000007716	ENSHGLG00000011025 #18	MLLT1 (ENSHGLG00000011819) #19	ENSHGLG00000044003	ENSHGLG00000049237 #21	ENSHGLG00000014805	ENSHGLG00000044408	RFX2 (ENSHGLG00000015258) #22	RANBP3 (ENSHGLG00000015535) #23	CAPS (ENSHGLG00000033681) #24	ENSHGLG00000032314 #25	ENSHGLG00000014115 #26	ENSHGLG00000044894	ENSHGLG00000014195	ENSHGLG00000037047	ENSHGLG00000046495	NRTN (ENSHGLG00000014364) ##15	DUS3L (ENSHGLG00000013475) #27	PRR22 (ENSHGLG00000043073) #28	CATSPERD (ENSHGLG00000032633)	LONP1 (ENSHGLG00000013886) #29	ENSHGLG00000013869 #30	MICOS13 (ENSHGLG00000032110) #31
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a.e #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000161972 #7	ENSGT00940000161573 #8	ENSGT00950000183101.a.b.a.e #9	ENSGT00940000159428 #10	ENSGT00940000162419 #11	ENSGT00940000156051 #12	ENSGT00940000163693 #13	ENSGT00440000038032 #14	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #19	ENSGT00940000164043 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212 #25	ENSGT00390000012434 #26	ENSGT00940000163125	ENSGT00950000182993.A.a ##15	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487	ENSGT00390000002629 #31	ENSGT00940000155916 #32	ENSGT00940000161482 #33	ENSGT01010000222837 #34
Squirrel	MODERN SPECIES	188	ENSSTOG00000002404 #8	CRB3 (ENSSTOG00000029565) #9	SLC25A23 (ENSSTOG00000002387) #10	SLC25A41 (ENSSTOG00000023022) #11	KHSRP (ENSSTOG00000002371) #12	ENSSTOG00000032166 #13	GTF2F1 (ENSSTOG00000025689) #14	PSPN (ENSSTOG00000023397) #15	ALKBH7 (ENSSTOG00000002368) #16	CLPP (ENSSTOG00000028013) #17	ACER1 (ENSSTOG00000002348) #18	ENSSTOG00000022476	MLLT1 (ENSSTOG00000002340) #19	ENSSTOG00000019704 #20	ENSSTOG00000007511 #21	RFX2 (ENSSTOG00000027723) #22	ENSSTOG00000034262 #23	RANBP3 (ENSSTOG00000006462) #23	CAPS (ENSSTOG00000006493) #24	VMAC (ENSSTOG00000012822) #25	NDUFA11 (ENSSTOG00000028356) #26	ENSSTOG00000022255	NRTN (ENSSTOG00000009542) ##15	DUS3L (ENSSTOG00000025017) #27	PRR22 (ENSSTOG00000025571) #28	LONP1 (ENSSTOG00000019884) #29	ENSSTOG00000020518 ##30	HSD11B1L (ENSSTOG00000027416)	MICOS13 (ENSSTOG00000002814) #31	SAFB (ENSSTOG00000002783) #32	ENSSTOG00000002758 #33
Arctic ground squirrel	MODERN SPECIES	301	TUBB4A (ENSUPAG00010023665) #7	DENND1C (ENSUPAG00010023662) #8	ENSUPAG00010023661 #9	SLC25A23 (ENSUPAG00010023660) #10	SLC25A41 (ENSUPAG00010023658) #11	KHSRP (ENSUPAG00010023657) #12	ENSUPAG00010023656 #13	GTF2F1 (ENSUPAG00010023655) #14	PSPN (ENSUPAG00010023654) #15	ALKBH7 (ENSUPAG00010023653) #16	CLPP (ENSUPAG00010023652) #17	ACER1 (ENSUPAG00010023651) #18	MLLT1 (ENSUPAG00010023650) #19	ENSUPAG00010023649 #20	ACSBG2 (ENSUPAG00010023648) #21	RFX2 (ENSUPAG00010023647) #22	RANBP3 (ENSUPAG00010023645) #23	CAPS (ENSUPAG00010023646) #24	VMAC (ENSUPAG00010023644) #25	ENSUPAG00010023643 #26	ENSUPAG00010023642	NRTN (ENSUPAG00010023641) ##15	DUS3L (ENSUPAG00010023640) #27	PRR22 (ENSUPAG00010023639) #28	LONP1 (ENSUPAG00010023636) #29	RPL36 (ENSUPAG00010023635) #30	HSD11B1L (ENSUPAG00010023634)	MICOS13 (ENSUPAG00010023633) #31	SAFB (ENSUPAG00010023630) #32	SAFB2 (ENSUPAG00010023625) #33	ENSUPAG00010023624 #34
Alpin marmot	MODERN SPECIES	88	TNFSF9 (ENSMMMG00000019570)	TUBB4A (ENSMMMG00000019550) #7	DENND1C (ENSMMMG00000019533) #8	ENSMMMG00000019517 #9	SLC25A23 (ENSMMMG00000019504) #10	SLC25A41 (ENSMMMG00000019493) #11	KHSRP (ENSMMMG00000019257) #12	ENSMMMG00000019249 #13	PSPN (ENSMMMG00000019228) #15	ALKBH7 (ENSMMMG00000019225) #16	CLPP (ENSMMMG00000019216) #17	ACER1 (ENSMMMG00000019214) #18	MLLT1 (ENSMMMG00000019206) #19	ENSMMMG00000019196 #20	ACSBG2 (ENSMMMG00000019139) #21	RFX2 (ENSMMMG00000019107) #22	ENSMMMG00000019101 #23	RANBP3 (ENSMMMG00000019085) #23	CAPS (ENSMMMG00000019062) #24	VMAC (ENSMMMG00000019061) #25	NDUFA11 (ENSMMMG00000019059) #26	NRTN (ENSMMMG00000019052) ##15	DUS3L (ENSMMMG00000019016) #27	LONP1 (ENSMMMG00000018859) #29	HSD11B1L (ENSMMMG00000018842)	MICOS13 (ENSMMMG00000018836) #31	SAFB (ENSMMMG00000018807) #32	SAFB2 (ENSMMMG00000018701) #33	ENSMMMG00000018676 #36	ENSMMMG00000018660 #36	KDM4B (ENSMMMG00000018611) #37
Eurasian red squirrel	MODERN SPECIES	7	TUBB4A (ENSSVLG00005023819) #7	DENND1C (ENSSVLG00005023643) #8	CRB3 (ENSSVLG00005023581) #9	SLC25A23 (ENSSVLG00005023541) #10	SLC25A41 (ENSSVLG00005023479) #11	KHSRP (ENSSVLG00005023444) #12	ENSSVLG00005023383 #13	GTF2F1 (ENSSVLG00005023301) #14	PSPN (ENSSVLG00005023279) #15	ALKBH7 (ENSSVLG00005023240) #16	CLPP (ENSSVLG00005023216) #17	ACER1 (ENSSVLG00005023163) #18	MLLT1 (ENSSVLG00005023111) #19	ENSSVLG00005022830 #20	ACSBG2 (ENSSVLG00005022613) #21	RFX2 (ENSSVLG00005022368) #22	RANBP3 (ENSSVLG00005022208) #23	CAPS (ENSSVLG00005022099) #24	VMAC (ENSSVLG00005022064) #25	NDUFA11 (ENSSVLG00005022032) #26	ENSSVLG00005021990	NRTN (ENSSVLG00005021968) ##15	DUS3L (ENSSVLG00005021792) #27	PRR22 (ENSSVLG00005021755) #28	LONP1 (ENSSVLG00005021189) #29	ENSSVLG00005021082 ##30	HSD11B1L (ENSSVLG00005020980)	MICOS13 (ENSSVLG00005020922) #31	SAFB (ENSSVLG00005020852) #32	SAFB2 (ENSSVLG00005020804) #33	ENSSVLG00005020769 #34