Euteleostomi	ANCESTRAL SPECIES	436								ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00940000159808	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000164500	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.b ##32	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872
Tetrapoda	ANCESTRAL SPECIES	59	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.b ##32	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872
Amniota	ANCESTRAL SPECIES	23	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT01050000248388	ENSGT00950000182993.A.a #26	ENSGT00940000163125
Mammalia	ANCESTRAL SPECIES	117					ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT01050000248388	ENSGT00950000182993.A.a #26	ENSGT00940000163125
Theria	ANCESTRAL SPECIES	41	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000165061
Eutheria	ANCESTRAL SPECIES	24	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Primates	ANCESTRAL SPECIES	18	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032.s #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585.k #17	ENSGT00390000005830.v #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.f #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Cebidae	ANCESTRAL SPECIES	20	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032.s #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585.k #17	ENSGT00390000005830.v #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.f #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Marmoset	MODERN SPECIES	14	TNFSF14 (ENSCJAG00000085938) #7	CD70 (ENSCJAG00000081455) #8	TNFSF9 (ENSCJAG00000016530) #9	TUBB4A (ENSCJAG00000016534) #10	DENND1C (ENSCJAG00000016543) #11	CRB3 (ENSCJAG00000044939) #12	SLC25A23 (ENSCJAG00000016577) #13	KHSRP (ENSCJAG00000016627) #14	GTF2F1 (ENSCJAG00000016669) #15	PSPN (ENSCJAG00000016688) #16	ALKBH7 (ENSCJAG00000016691) #17	CLPP (ENSCJAG00000046904) #18	ACER1 (ENSCJAG00000016705) #19	MLLT1 (ENSCJAG00000044059) #20	ACSBG2 (ENSCJAG00000016734) #21	RFX2 (ENSCJAG00000016750) #22	RANBP3 (ENSCJAG00000016791) #23	VMAC (ENSCJAG00000072555) #24	NDUFA11 (ENSCJAG00000016923) #25	NRTN (ENSCJAG00000016988) #26	DUS3L (ENSCJAG00000016997) #27	PRR22 (ENSCJAG00000017034) #28	CATSPERD (ENSCJAG00000016893) #29	LONP1 (ENSCJAG00000017041) #30	HSD11B1L (ENSCJAG00000016948) #31	RPL36 (ENSCJAG00000017072) #32	MICOS13 (ENSCJAG00000017076) #33	SAFB (ENSCJAG00000017081) #34	SAFB2 (ENSCJAG00000041996) #35	TINCR (ENSCJAG00000046186) #36	PTPRS (ENSCJAG00000017261) #37
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032.s #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585.k #17	ENSGT00390000005830.v #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.f #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Capuchin	MODERN SPECIES	53	TNFSF9 (ENSCCAG00000029091) #9	TUBB4A (ENSCCAG00000013999) #10	DENND1C (ENSCCAG00000034905) #11	CRB3 (ENSCCAG00000023680) #12	SLC25A23 (ENSCCAG00000022370) #13	SLC25A41 (ENSCCAG00000026520)	KHSRP (ENSCCAG00000025297) #14	ENSCCAG00000037309 #15	PSPN (ENSCCAG00000025813) #16	ALKBH7 (ENSCCAG00000025999) #17	CLPP (ENSCCAG00000037133) #18	ENSCCAG00000030606	ACER1 (ENSCCAG00000030282) #19	MLLT1 (ENSCCAG00000026378) #20	ACSBG2 (ENSCCAG00000028068) #21	RFX2 (ENSCCAG00000028516) #22	RANBP3 (ENSCCAG00000033247) #23	CAPS (ENSCCAG00000021578)	VMAC (ENSCCAG00000029347) #24	ENSCCAG00000033610	ENSCCAG00000031284	NRTN (ENSCCAG00000024847) #26	DUS3L (ENSCCAG00000036889) #27	PRR22 (ENSCCAG00000032448) #28	CATSPERD (ENSCCAG00000028129) #29	ENSCCAG00000033624	LONP1 (ENSCCAG00000025968) #30	ENSCCAG00000033023 #32	HSD11B1L (ENSCCAG00000032266) #31	MICOS13 (ENSCCAG00000036233) #33	SAFB (ENSCCAG00000020193) #34
Bolivian squirrel monkey	MODERN SPECIES	150	CD70 (ENSSBOG00000032929) #8	TNFSF9 (ENSSBOG00000036008) #9	TUBB4A (ENSSBOG00000019437) #10	DENND1C (ENSSBOG00000030628) #11	CRB3 (ENSSBOG00000030526) #12	SLC25A23 (ENSSBOG00000033178) #13	SLC25A41 (ENSSBOG00000020009)	KHSRP (ENSSBOG00000034871) #14	GTF2F1 (ENSSBOG00000033946) #15	PSPN (ENSSBOG00000031809) #16	ALKBH7 (ENSSBOG00000024563) #17	CLPP (ENSSBOG00000036193) #18	ACER1 (ENSSBOG00000028157) #19	MLLT1 (ENSSBOG00000025950) #20	ACSBG2 (ENSSBOG00000030379) #21	RFX2 (ENSSBOG00000017266) #22	RANBP3 (ENSSBOG00000029392) #23	CAPS (ENSSBOG00000034784)	VMAC (ENSSBOG00000032055) #24	NDUFA11 (ENSSBOG00000032051) #25	ENSSBOG00000026247	NRTN (ENSSBOG00000034565) #26	DUS3L (ENSSBOG00000020402) #27	PRR22 (ENSSBOG00000011474) #28	CATSPERD (ENSSBOG00000029793) #29	LONP1 (ENSSBOG00000031618) #30	RPL36 (ENSSBOG00000034984) #32	HSD11B1L (ENSSBOG00000024882) #31	ENSSBOG00000014431 #33	SAFB (ENSSBOG00000026291) #34	SAFB2 (ENSSBOG00000032315) #35
Mas night monkey	MODERN SPECIES	937	TNFSF14 (ENSANAG00000020878) #7	CD70 (ENSANAG00000037767) #8	TNFSF9 (ENSANAG00000028047) #9	TUBB4A (ENSANAG00000035357) #10	DENND1C (ENSANAG00000026774) #11	SLC25A23 (ENSANAG00000037773) #13	SLC25A41 (ENSANAG00000021884)	KHSRP (ENSANAG00000027617) #14	ENSANAG00000035546 #15	PSPN (ENSANAG00000027968) #16	ALKBH7 (ENSANAG00000035316) #17	CLPP (ENSANAG00000025005) #18	ACER1 (ENSANAG00000037792) #19	MLLT1 (ENSANAG00000034543) #20	ACSBG2 (ENSANAG00000021889) #21	RFX2 (ENSANAG00000023324) #22	RANBP3 (ENSANAG00000028437) #23	CAPS (ENSANAG00000028375)	ENSANAG00000034701	VMAC (ENSANAG00000037811) #24	NDUFA11 (ENSANAG00000034722) #25	ENSANAG00000005729	NRTN (ENSANAG00000038023) #26	DUS3L (ENSANAG00000021997) #27	PRR22 (ENSANAG00000024920) #28	ENSANAG00000032966 #29	LONP1 (ENSANAG00000023956) #30	ENSANAG00000029130 ##32	HSD11B1L (ENSANAG00000033693) #31	MICOS13 (ENSANAG00000021680) #33	SAFB (ENSANAG00000028821) #34
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Hominidae	ANCESTRAL SPECIES		ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Gorilla	MODERN SPECIES	10	TNFSF9 (ENSGGOG00000023927) #9	TUBB4A (ENSGGOG00000027067) #10	DENND1C (ENSGGOG00000007075) #11	CRB3 (ENSGGOG00000007070) #12	SLC25A23 (ENSGGOG00000007058) #13	ENSGGOG00000007048	KHSRP (ENSGGOG00000007028) #14	GTF2F1 (ENSGGOG00000000318) #15	PSPN (ENSGGOG00000000316) #16	ALKBH7 (ENSGGOG00000027915) #17	ENSGGOG00000011638	ACER1 (ENSGGOG00000010886) #19	ENSGGOG00000040780	MLLT1 (ENSGGOG00000010872) #20	ACSBG2 (ENSGGOG00000026850) #21	RFX2 (ENSGGOG00000009633) #22	RANBP3 (ENSGGOG00000006300) #23	ENSGGOG00000006292	VMAC (ENSGGOG00000038181) #24	NDUFA11 (ENSGGOG00000006279) #25	FUT5 (ENSGGOG00000006269)	FUT3 (ENSGGOG00000006272)	FUT6 (ENSGGOG00000006260)	NRTN (ENSGGOG00000006255) #26	DUS3L (ENSGGOG00000027433) #27	PRR22 (ENSGGOG00000005789) #28	CATSPERD (ENSGGOG00000015377) #29	LONP1 (ENSGGOG00000015370) #30	RPL36 (ENSGGOG00000015365) #32	HSD11B1L (ENSGGOG00000015362) #31	ENSGGOG00000011081 #33
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Pan	ANCESTRAL SPECIES	14	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.b.b	ENSGT00940000163389.a.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Bonobo	MODERN SPECIES	10	CD70 (ENSPPAG00000029346) #8	TNFSF9 (ENSPPAG00000043434) #9	TUBB4A (ENSPPAG00000021486) #10	DENND1C (ENSPPAG00000037306) #11	CRB3 (ENSPPAG00000028757) #12	SLC25A23 (ENSPPAG00000040203) #13	SLC25A41 (ENSPPAG00000037155)	ENSPPAG00000036398 #14	GTF2F1 (ENSPPAG00000006377) #15	PSPN (ENSPPAG00000038423) #16	ALKBH7 (ENSPPAG00000028564) #17	CLPP (ENSPPAG00000041016) #18	ACER1 (ENSPPAG00000041682) #19	MLLT1 (ENSPPAG00000042286) #20	ACSBG2 (ENSPPAG00000031354) #21	RFX2 (ENSPPAG00000041867) #22	RANBP3 (ENSPPAG00000040739) #23	ENSPPAG00000022696	VMAC (ENSPPAG00000031186) #24	ENSPPAG00000024786 #25	FUT3 (ENSPPAG00000035068)	FUT6 (ENSPPAG00000030226)	DUS3L (ENSPPAG00000038054) #27	PRR22 (ENSPPAG00000040731) #28	CATSPERD (ENSPPAG00000025456) #29	LONP1 (ENSPPAG00000038062) #30	RPL36 (ENSPPAG00000027352) #32	HSD11B1L (ENSPPAG00000018871) #31	ENSPPAG00000039035 #33	SAFB (ENSPPAG00000035129) #34	SAFB2 (ENSPPAG00000043392) #35
Chimpanzee	MODERN SPECIES	10	TNFSF9 (ENSPTRG00000043305) #9	TUBB4A (ENSPTRG00000010369) #10	DENND1C (ENSPTRG00000029159) #11	CRB3 (ENSPTRG00000010367) #12	SLC25A23 (ENSPTRG00000010366) #13	SLC25A41 (ENSPTRG00000010365)	KHSRP (ENSPTRG00000010364) #14	GTF2F1 (ENSPTRG00000010362) #15	PSPN (ENSPTRG00000045539) #16	ALKBH7 (ENSPTRG00000010360) #17	CLPP (ENSPTRG00000010359) #18	ACER1 (ENSPTRG00000010358) #19	ENSPTRG00000045179	MLLT1 (ENSPTRG00000010356) #20	ACSBG2 (ENSPTRG00000010354) #21	RFX2 (ENSPTRG00000010352) #22	RANBP3 (ENSPTRG00000010351) #23	CAPS (ENSPTRG00000010350)	VMAC (ENSPTRG00000010349) #24	NDUFA11 (ENSPTRG00000029161) #25	FUT3 (ENSPTRG00000010346)	FUT5 (ENSPTRG00000010347)	NRTN (ENSPTRG00000010344) #26	DUS3L (ENSPTRG00000010343) #27	PRR22 (ENSPTRG00000032573) #28	CATSPERD (ENSPTRG00000046125) #29	LONP1 (ENSPTRG00000010339) #30	RPL36 (ENSPTRG00000010338) #32	HSD11B1L (ENSPTRG00000010337) #31	MICOS13 (ENSPTRG00000010336) #33	SAFB (ENSPTRG00000010335) #34
Human	MODERN SPECIES	10	CD70 (ENSG00000125726) #8	TNFSF9 (ENSG00000125657) #9	TUBB4A (ENSG00000104833) #10	DENND1C (ENSG00000205744) #11	CRB3 (ENSG00000130545) #12	SLC25A23 (ENSG00000125648) #13	SLC25A41 (ENSG00000181240)	KHSRP (ENSG00000088247) #14	GTF2F1 (ENSG00000125651) #15	PSPN (ENSG00000125650) #16	ALKBH7 (ENSG00000125652) #17	CLPP (ENSG00000125656) #18	ACER1 (ENSG00000167769) #19	MLLT1 (ENSG00000130382) #20	ACSBG2 (ENSG00000130377) #21	RFX2 (ENSG00000087903) #22	RANBP3 (ENSG00000031823) #23	CAPS (ENSG00000105519)	VMAC (ENSG00000187650) #24	NDUFA11 (ENSG00000174886) #25	ENSG00000267740	FUT5 (ENSG00000130383)	FUT3 (ENSG00000171124)	FUT6 (ENSG00000156413)	NRTN (ENSG00000171119) #26	DUS3L (ENSG00000141994) #27	ENSG00000267157	PRR22 (ENSG00000212123) #28	CATSPERD (ENSG00000174898) #29	LONP1 (ENSG00000196365) #30	HSD11B1L (ENSG00000167733) #31
Orangutan	MODERN SPECIES	10	TNFSF14 (ENSPPYG00000031179) #7	ENSPPYG00000009460 #8	TNFSF9 (ENSPPYG00000009459) #9	TUBB4A (ENSPPYG00000041695) #10	DENND1C (ENSPPYG00000009458) #11	ENSPPYG00000009457 #12	SLC25A23 (ENSPPYG00000009456) #13	SLC25A41 (ENSPPYG00000009455)	KHSRP (ENSPPYG00000009454) #14	PSPN (ENSPPYG00000009451) #16	ALKBH7 (ENSPPYG00000033281) #17	CLPP (ENSPPYG00000009449) #18	ACER1 (ENSPPYG00000009448) #19	MLLT1 (ENSPPYG00000009447) #20	ACSBG2 (ENSPPYG00000009446) #21	RFX2 (ENSPPYG00000009445) #22	RANBP3 (ENSPPYG00000009444) #23	ENSPPYG00000036062	ENSPPYG00000030201 #25	FUT5 (ENSPPYG00000009438)	FUT6 (ENSPPYG00000009437)	NRTN (ENSPPYG00000009436) #26	DUS3L (ENSPPYG00000009435) #27	PRR22 (ENSPPYG00000009434) #28	CATSPERD (ENSPPYG00000009433) #29	LONP1 (ENSPPYG00000009432) #30	RPL36 (ENSPPYG00000009431) #32	HSD11B1L (ENSPPYG00000009430) #31	ENSPPYG00000009429 #33	SAFB (ENSPPYG00000009428) #34	SAFB2 (ENSPPYG00000009427) #35
Gibbon	MODERN SPECIES		TRIP10 (ENSNLEG00000000351)	ENSNLEG00000000344	C3 (ENSNLEG00000016006)	TNFSF14 (ENSNLEG00000016000) #7	CD70 (ENSNLEG00000015993) #8	TUBB4A (ENSNLEG00000032392) #10	DENND1C (ENSNLEG00000015941) #11	CRB3 (ENSNLEG00000030283) #12	ENSNLEG00000015935 #13	KHSRP (ENSNLEG00000015923) #14	GTF2F1 (ENSNLEG00000015909) #15	ENSNLEG00000029103	ACER1 (ENSNLEG00000015897) #19	ENSNLEG00000015892 #20	ACSBG2 (ENSNLEG00000015883) #21	RFX2 (ENSNLEG00000015842) #22	RANBP3 (ENSNLEG00000015710) #23	CAPS (ENSNLEG00000015702)	TPRX2 (ENSNLEG00000000972)	ENSNLEG00000000975	ENSNLEG00000001326	ENSNLEG00000001333	CABP5 (ENSNLEG00000032429)	PLA2G4C (ENSNLEG00000004261)	ENSNLEG00000004264	ENSNLEG00000028641	ENSNLEG00000034930	ENSNLEG00000004344	ODAD1 (ENSNLEG00000004346)	EMP3 (ENSNLEG00000004357)	TMEM143 (ENSNLEG00000004369)
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Vervet Monkey	MODERN SPECIES	25	CD70 (ENSCSAG00000009543) #8	TNFSF9 (ENSCSAG00000009573) #9	TUBB4A (ENSCSAG00000009578) #10	DENND1C (ENSCSAG00000009587) #11	CRB3 (ENSCSAG00000009594) #12	SLC25A23 (ENSCSAG00000009602) #13	SLC25A41 (ENSCSAG00000009616)	KHSRP (ENSCSAG00000009626) #14	ENSCSAG00000009656	PSPN (ENSCSAG00000009668) #16	ALKBH7 (ENSCSAG00000009674) #17	CLPP (ENSCSAG00000009679) #18	ACER1 (ENSCSAG00000009688) #19	MLLT1 (ENSCSAG00000009698) #20	ACSBG2 (ENSCSAG00000009753) #21	RFX2 (ENSCSAG00000009771) #22	ENSCSAG00000009781	RANBP3 (ENSCSAG00000009796) #23	ENSCSAG00000009786	ENSCSAG00000018824	VMAC (ENSCSAG00000018823) #24	NDUFA11 (ENSCSAG00000009802) #25	FUT5 (ENSCSAG00000018822)	ENSCSAG00000009812	NRTN (ENSCSAG00000009819) #26	DUS3L (ENSCSAG00000009883) #27	PRR22 (ENSCSAG00000009903) #28	LONP1 (ENSCSAG00000009918) #30	HSD11B1L (ENSCSAG00000009923) #31	MICOS13 (ENSCSAG00000009934) #33	SAFB (ENSCSAG00000009949) #34
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00910000147670
Olive baboon	MODERN SPECIES	12	TRIP10 (ENSPANG00000005035)	GPR108 (ENSPANG00000022720)	TNFSF14 (ENSPANG00000030479) #7	CD70 (ENSPANG00000000880) #8	TNFSF9 (ENSPANG00000051412) #9	TUBB4A (ENSPANG00000006306) #10	DENND1C (ENSPANG00000004918) #11	CRB3 (ENSPANG00000003084) #12	SLC25A23 (ENSPANG00000008553) #13	PSPN (ENSPANG00000030010) #16	ALKBH7 (ENSPANG00000035776) #17	CLPP (ENSPANG00000047270) #18	ACER1 (ENSPANG00000006330) #19	MLLT1 (ENSPANG00000015038) #20	ACSBG2 (ENSPANG00000009518) #21	RFX2 (ENSPANG00000012105) #22	RANBP3 (ENSPANG00000031036) #23	CAPS (ENSPANG00000007003)	VMAC (ENSPANG00000032013) #24	NDUFA11 (ENSPANG00000003098) #25	ENSPANG00000032774	NRTN (ENSPANG00000010856) #26	ENSPANG00000042524	PRR22 (ENSPANG00000007769) #28	LONP1 (ENSPANG00000010631) #30	ENSPANG00000032485 ##32	HSD11B1L (ENSPANG00000003971) #31	MICOS13 (ENSPANG00000017471) #33	SAFB (ENSPANG00000007770) #34	SAFB2 (ENSPANG00000007004) #35	TINCR (ENSPANG00000045730) #36
Cercopithecinae_d	ANCESTRAL SPECIES	22	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00910000147670
Drill	MODERN SPECIES	1534	TNFSF14 (ENSMLEG00000043307) #7	CD70 (ENSMLEG00000016471) #8	TUBB4A (ENSMLEG00000030013) #10	DENND1C (ENSMLEG00000039863) #11	CRB3 (ENSMLEG00000034520) #12	SLC25A23 (ENSMLEG00000040513) #13	SLC25A41 (ENSMLEG00000033366)	KHSRP (ENSMLEG00000030501) #14	GTF2F1 (ENSMLEG00000027908) #15	PSPN (ENSMLEG00000036794) #16	ALKBH7 (ENSMLEG00000039193) #17	CLPP (ENSMLEG00000022592) #18	ACER1 (ENSMLEG00000042127) #19	MLLT1 (ENSMLEG00000034524) #20	ACSBG2 (ENSMLEG00000021100) #21	RFX2 (ENSMLEG00000025063) #22	RANBP3 (ENSMLEG00000028374) #23	CAPS (ENSMLEG00000036098)	VMAC (ENSMLEG00000041920) #24	NDUFA11 (ENSMLEG00000028488) #25	FUT3 (ENSMLEG00000037551)	ENSMLEG00000036792	DUS3L (ENSMLEG00000043222) #27	PRR22 (ENSMLEG00000035921) #28	CATSPERD (ENSMLEG00000031145) #29	LONP1 (ENSMLEG00000039601) #30	RPL36 (ENSMLEG00000040908) #32	HSD11B1L (ENSMLEG00000034487) #31	MICOS13 (ENSMLEG00000029750) #33	SAFB (ENSMLEG00000038637) #34	SAFB2 (ENSMLEG00000034562) #35
Sooty mangabey	MODERN SPECIES	177	CD70 (ENSCATG00000013090) #8	TNFSF9 (ENSCATG00000032350) #9	TUBB4A (ENSCATG00000032861) #10	DENND1C (ENSCATG00000016215) #11	CRB3 (ENSCATG00000036281) #12	SLC25A23 (ENSCATG00000033633) #13	SLC25A41 (ENSCATG00000035228)	KHSRP (ENSCATG00000036458) #14	ENSCATG00000034000 #15	PSPN (ENSCATG00000035142) #16	ALKBH7 (ENSCATG00000030199) #17	CLPP (ENSCATG00000032343) #18	ACER1 (ENSCATG00000026770) #19	MLLT1 (ENSCATG00000036992) #20	ACSBG2 (ENSCATG00000033762) #21	RFX2 (ENSCATG00000040945) #22	RANBP3 (ENSCATG00000044346) #23	CAPS (ENSCATG00000030192)	VMAC (ENSCATG00000041336) #24	ENSCATG00000041060 #25	ENSCATG00000040235	ENSCATG00000040267	NRTN (ENSCATG00000038604) #26	DUS3L (ENSCATG00000040809) #27	PRR22 (ENSCATG00000033772) #28	CATSPERD (ENSCATG00000039925) #29	LONP1 (ENSCATG00000040763) #30	RPL36 (ENSCATG00000032940) #32	HSD11B1L (ENSCATG00000029572) #31	MICOS13 (ENSCATG00000018927) #33	ENSCATG00000014937
Macaca	ANCESTRAL SPECIES	24	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT01100000263508.A.d.e.a.b	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Rhesus	MODERN SPECIES	10	CD70 (ENSMMUG00000011042) #8	TNFSF9 (ENSMMUG00000001985) #9	TUBB4A (ENSMMUG00000014216) #10	DENND1C (ENSMMUG00000005600) #11	CRB3 (ENSMMUG00000050193) #12	SLC25A23 (ENSMMUG00000005598) #13	SLC25A41 (ENSMMUG00000016526)	KHSRP (ENSMMUG00000005597) #14	PSPN (ENSMMUG00000053244) #16	ALKBH7 (ENSMMUG00000000054) #17	CLPP (ENSMMUG00000028914) #18	ACER1 (ENSMMUG00000005698) #19	ENSMMUG00000063389	MLLT1 (ENSMMUG00000005697) #20	ACSBG2 (ENSMMUG00000018937) #21	RFX2 (ENSMMUG00000011967) #22	RANBP3 (ENSMMUG00000011964) #23	CAPS (ENSMMUG00000011963)	NDUFA11 (ENSMMUG00000016665) #25	FUT5 (ENSMMUG00000050702)	NRTN (ENSMMUG00000058031) #26	DUS3L (ENSMMUG00000031027) #27	LONP1 (ENSMMUG00000020707) #30	RPL36 (ENSMMUG00000041188) #32	HSD11B1L (ENSMMUG00000020705) #31	MICOS13 (ENSMMUG00000028920) #33	SAFB (ENSMMUG00000017970) #34	SAFB2 (ENSMMUG00000017968) #35	ENSMMUG00000052315	ZNRF4 (ENSMMUG00000012312)	PTPRS (ENSMMUG00000011962) #37
Crab-eating macaque	MODERN SPECIES	10	TNFSF14 (ENSMFAG00000003750) #7	CD70 (ENSMFAG00000041094) #8	TUBB4A (ENSMFAG00000059050) #10	CRB3 (ENSMFAG00000040330) #12	DENND1C (ENSMFAG00000031978) #11	SLC25A23 (ENSMFAG00000039503) #13	ENSMFAG00000063742	KHSRP (ENSMFAG00000000292) #14	GTF2F1 (ENSMFAG00000003355) #15	ALKBH7 (ENSMFAG00000045978) #17	CLPP (ENSMFAG00000063171) #18	ACER1 (ENSMFAG00000043465) #19	ENSMFAG00000064713	MLLT1 (ENSMFAG00000039501) #20	ACSBG2 (ENSMFAG00000033353) #21	RFX2 (ENSMFAG00000036589) #22	RANBP3 (ENSMFAG00000031395) #23	CAPS (ENSMFAG00000044715)	ENSMFAG00000003802 #25	FUT5 (ENSMFAG00000038995)	FUT3 (ENSMFAG00000003882)	NRTN (ENSMFAG00000038415) #26	PRR22 (ENSMFAG00000031910) #28	CATSPERD (ENSMFAG00000045623) #29	ENSMFAG00000043447 #30	ENSMFAG00000034345 #32	HSD11B1L (ENSMFAG00000044973) #31	MICOS13 (ENSMFAG00000034498) #33	ENSMFAG00000003885	SAFB2 (ENSMFAG00000039706) #35	TINCR (ENSMFAG00000032284) #36
Pig-tailed macaque	MODERN SPECIES	76	CD70 (ENSMNEG00000032223) #8	TNFSF9 (ENSMNEG00000032348) #9	TUBB4A (ENSMNEG00000038280) #10	DENND1C (ENSMNEG00000029798) #11	CRB3 (ENSMNEG00000040789) #12	SLC25A23 (ENSMNEG00000033667) #13	SLC25A41 (ENSMNEG00000031428)	KHSRP (ENSMNEG00000036982) #14	GTF2F1 (ENSMNEG00000038838) #15	PSPN (ENSMNEG00000039281) #16	ALKBH7 (ENSMNEG00000029223) #17	ENSMNEG00000041705	ACER1 (ENSMNEG00000029728) #19	MLLT1 (ENSMNEG00000031529) #20	ACSBG2 (ENSMNEG00000044133) #21	RFX2 (ENSMNEG00000030375) #22	RANBP3 (ENSMNEG00000036230) #23	CAPS (ENSMNEG00000041627)	VMAC (ENSMNEG00000037094) #24	NDUFA11 (ENSMNEG00000004413) #25	ENSMNEG00000011100	ENSMNEG00000032896	NRTN (ENSMNEG00000019173) #26	DUS3L (ENSMNEG00000036509) #27	PRR22 (ENSMNEG00000045136) #28	CATSPERD (ENSMNEG00000021927) #29	LONP1 (ENSMNEG00000042912) #30	ENSMNEG00000044430 ##32	HSD11B1L (ENSMNEG00000033295) #31	MICOS13 (ENSMNEG00000027324) #33	SAFB (ENSMNEG00000035637) #34
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00390000006244 #9	ENSGT00940000161972.d.a #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00940000167406	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a	ENSGT00940000163389.b.b	ENSGT00940000163389.b.a	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33
Golden snub-nosed monkey	MODERN SPECIES	1318	CD70 (ENSRROG00000040655) #8	ENSRROG00000007343	TNFSF9 (ENSRROG00000043525) #9	TUBB4A (ENSRROG00000010011) #10	DENND1C (ENSRROG00000036222) #11	CRB3 (ENSRROG00000035164) #12	SLC25A23 (ENSRROG00000009609) #13	SLC25A41 (ENSRROG00000044292)	KHSRP (ENSRROG00000031782) #14	ENSRROG00000020433 #15	ALKBH7 (ENSRROG00000043210) #17	CLPP (ENSRROG00000042048) #18	ACER1 (ENSRROG00000022472) #19	MLLT1 (ENSRROG00000042162) #20	ACSBG2 (ENSRROG00000035513) #21	RFX2 (ENSRROG00000028821) #22	RANBP3 (ENSRROG00000032677) #23	CAPS (ENSRROG00000043353)	VMAC (ENSRROG00000031275) #24	NDUFA11 (ENSRROG00000001285) #25	FUT3 (ENSRROG00000032467)	ENSRROG00000043951	NRTN (ENSRROG00000005450) #26	DUS3L (ENSRROG00000037008) #27	PRR22 (ENSRROG00000009666) #28	CATSPERD (ENSRROG00000039160) #29	LONP1 (ENSRROG00000026671) #30	ENSRROG00000040246 #32	HSD11B1L (ENSRROG00000021400) #31	MICOS13 (ENSRROG00000031692) #33	SAFB (ENSRROG00000029278) #34
Black snub-nosed monkey	MODERN SPECIES	198	ENSRBIG00000038426	CA4 (ENSRBIG00000036296)	ZNHIT3 (ENSRBIG00000028062)	MYO19 (ENSRBIG00000043731)	PIGW (ENSRBIG00000016056)	ENSRBIG00000001284	MRM1 (ENSRBIG00000040494)	ENSRBIG00000036146	LHX1 (ENSRBIG00000008229)	AATF (ENSRBIG00000039099)	ACACA (ENSRBIG00000044612)	ENSRBIG00000039364	ACER1 (ENSRBIG00000035610) #19	MLLT1 (ENSRBIG00000031734) #20	ACSBG2 (ENSRBIG00000029754) #21	RFX2 (ENSRBIG00000033776) #22	RANBP3 (ENSRBIG00000027814) #23	CAPS (ENSRBIG00000044100)	NDUFA11 (ENSRBIG00000038563) #25	FUT5 (ENSRBIG00000044634)
Tarsier	MODERN SPECIES	2408														ENSTSYG00000027424	ACSBG2 (ENSTSYG00000008040) #21	RFX2 (ENSTSYG00000012982) #22	RANBP3 (ENSTSYG00000002546) #23
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.i #34	ENSGT00940000161482 #35
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.i.a #34	ENSGT00940000155916.i.b #34
Mouse lemur	MODERN SPECIES	16	TNFSF14 (ENSMICG00000033223) #7	CD70 (ENSMICG00000042047) #8	TNFSF9 (ENSMICG00000046337) #9	TUBB4A (ENSMICG00000014890) #10	DENND1C (ENSMICG00000004586) #11	CRB3 (ENSMICG00000034140) #12	SLC25A23 (ENSMICG00000034151) #13	KHSRP (ENSMICG00000007863) #14	GTF2F1 (ENSMICG00000006292) #15	PSPN (ENSMICG00000044211) #16	ALKBH7 (ENSMICG00000006288) #17	ENSMICG00000006284 #18	ACER1 (ENSMICG00000006279) #19	MLLT1 (ENSMICG00000006273) #20	ACSBG2 (ENSMICG00000014476) #21	RFX2 (ENSMICG00000004022) #22	RANBP3 (ENSMICG00000004018) #23	CAPS (ENSMICG00000004017)	VMAC (ENSMICG00000046967) #24	NDUFA11 (ENSMICG00000033137) #25	NRTN (ENSMICG00000044302) #26	DUS3L (ENSMICG00000007097) #27	PRR22 (ENSMICG00000026944) #28	CATSPERD (ENSMICG00000047708) #29	LONP1 (ENSMICG00000007050) #30	RPL36 (ENSMICG00000035474) #32	HSD11B1L (ENSMICG00000007033) #31	MICOS13 (ENSMICG00000007026) #33	ENSMICG00000034927 #34	ENSMICG00000046795 #34	ENSMICG00000008739 #34
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.i #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.i.a #34	ENSGT00940000155916.j #34
Greater bamboo lemur	MODERN SPECIES	1								GTF2F1 (ENSPSMG00000001096) #15	PSPN (ENSPSMG00000001156) #16	ALKBH7 (ENSPSMG00000001168) #17	CLPP (ENSPSMG00000001190) #18	ACER1 (ENSPSMG00000001205) #19	MLLT1 (ENSPSMG00000001229) #20	ENSPSMG00000001321	ACSBG2 (ENSPSMG00000001354) #21	RFX2 (ENSPSMG00000001497) #22	RANBP3 (ENSPSMG00000001649) #23	CAPS (ENSPSMG00000001758)	VMAC (ENSPSMG00000001763) #24	NDUFA11 (ENSPSMG00000001770) #25	ENSPSMG00000001776	NRTN (ENSPSMG00000001783) #26	DUS3L (ENSPSMG00000001817) #27	PRR22 (ENSPSMG00000001830) #28	CATSPERD (ENSPSMG00000001843) #29	LONP1 (ENSPSMG00000001890) #30	RPL36 (ENSPSMG00000001940) #32	ENSPSMG00000001945 #31	MICOS13 (ENSPSMG00000001966) #33	SAFB (ENSPSMG00000002292) #34
Coquerels sifaka	MODERN SPECIES	348	CD70 (ENSPCOG00000015987) #8	TNFSF9 (ENSPCOG00000014608) #9	TUBB4A (ENSPCOG00000015978) #10	DENND1C (ENSPCOG00000004246) #11	CRB3 (ENSPCOG00000028855) #12	SLC25A23 (ENSPCOG00000001217) #13	SLC25A41 (ENSPCOG00000003363)	KHSRP (ENSPCOG00000027506) #14	GTF2F1 (ENSPCOG00000013474) #15	PSPN (ENSPCOG00000025496) #16	ALKBH7 (ENSPCOG00000028026) #17	CLPP (ENSPCOG00000027215) #18	ACER1 (ENSPCOG00000016715) #19	MLLT1 (ENSPCOG00000014345) #20	ACSBG2 (ENSPCOG00000027134) #21	RFX2 (ENSPCOG00000027982) #22	RANBP3 (ENSPCOG00000021692) #23	CAPS (ENSPCOG00000026358)	VMAC (ENSPCOG00000019572) #24	NDUFA11 (ENSPCOG00000020260) #25	ENSPCOG00000022083	NRTN (ENSPCOG00000017407) #26	DUS3L (ENSPCOG00000026203) #27	PRR22 (ENSPCOG00000022075) #28	LONP1 (ENSPCOG00000018361) #30	ENSPCOG00000014752 ##32	HSD11B1L (ENSPCOG00000022053) #31	ENSPCOG00000019276 #33	SAFB (ENSPCOG00000014090) #34	ENSPCOG00000010436 #34	SAFB2 (ENSPCOG00000023260) #35
Bushbaby	MODERN SPECIES	242	TNFSF9 (ENSOGAG00000015299) #9	TUBB4A (ENSOGAG00000027332) #10	DENND1C (ENSOGAG00000034782) #11	CRB3 (ENSOGAG00000008078) #12	SLC25A23 (ENSOGAG00000008076) #13	SLC25A41 (ENSOGAG00000034049)	KHSRP (ENSOGAG00000008073) #14	ENSOGAG00000030767	ENSOGAG00000008070 #15	PSPN (ENSOGAG00000033652) #16	ALKBH7 (ENSOGAG00000030625) #17	CLPP (ENSOGAG00000028227) #18	ACER1 (ENSOGAG00000001804) #19	MLLT1 (ENSOGAG00000008063) #20	ENSOGAG00000028426	RFX2 (ENSOGAG00000004261) #22	RANBP3 (ENSOGAG00000004258) #23	CAPS (ENSOGAG00000004255)	NDUFA11 (ENSOGAG00000028410) #25	ENSOGAG00000016559	NRTN (ENSOGAG00000016554) #26	DUS3L (ENSOGAG00000016549) #27	PRR22 (ENSOGAG00000033276) #28	ZNF699 (ENSOGAG00000000834)	ZNF560 (ENSOGAG00000014997)	ENSOGAG00000028908	ZNF121 (ENSOGAG00000025131)	FBXL12 (ENSOGAG00000014529)	PIN1 (ENSOGAG00000017002)	OLFM2 (ENSOGAG00000010428)	COL5A3 (ENSOGAG00000016214)
Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Glires	ANCESTRAL SPECIES	25	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000162419	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Lagomorpha	ANCESTRAL SPECIES	566															ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22
Pika	MODERN SPECIES	5083																ENSOPRG00000001440 #22
Rabbit	MODERN SPECIES	924															ACSBG2 (ENSOCUG00000010163) #21	RFX2 (ENSOCUG00000005005) #22
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b #37
Long-tailed chinchilla	MODERN SPECIES	202	TUBB4A (ENSCLAG00000008831) #10	DENND1C (ENSCLAG00000012303) #11	ENSCLAG00000014016 #12	SLC25A23 (ENSCLAG00000015826) #13	SLC25A41 (ENSCLAG00000006414)	KHSRP (ENSCLAG00000007309) #14	ENSCLAG00000007910	GTF2F1 (ENSCLAG00000008779) #15	PSPN (ENSCLAG00000016653) #16	ALKBH7 (ENSCLAG00000017244) #17	CLPP (ENSCLAG00000009974) #18	ACER1 (ENSCLAG00000011663) #19	MLLT1 (ENSCLAG00000011833) #20	ENSCLAG00000006362	ACSBG2 (ENSCLAG00000007301) #21	RFX2 (ENSCLAG00000008242) #22	RANBP3 (ENSCLAG00000011775) #23	CAPS (ENSCLAG00000013758)	VMAC (ENSCLAG00000012168) #24	NDUFA11 (ENSCLAG00000008043) #25	DUS3L (ENSCLAG00000008470) #27	PRR22 (ENSCLAG00000009039) #28	LONP1 (ENSCLAG00000007239) #30	RPL36 (ENSCLAG00000012455) #32	MICOS13 (ENSCLAG00000009496) #33	SAFB (ENSCLAG00000007734) #34	ENSCLAG00000009742 #35	ENSCLAG00000007870	ENSCLAG00000008007	PTPRS (ENSCLAG00000006868) #37	KDM4B (ENSCLAG00000007020)
Degu	MODERN SPECIES	91	TUBB4A (ENSODEG00000015772) #10	ENSODEG00000015746 #11	CRB3 (ENSODEG00000015295) #12	SLC25A23 (ENSODEG00000014916) #13	SLC25A41 (ENSODEG00000015990)	KHSRP (ENSODEG00000015021) #14	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900) #15	PSPN (ENSODEG00000014761) #16	ALKBH7 (ENSODEG00000015141) #17	CLPP (ENSODEG00000015485) #18	ACER1 (ENSODEG00000015726) #19	MLLT1 (ENSODEG00000014883) #20	ENSODEG00000015920	ENSODEG00000015714 #21	RFX2 (ENSODEG00000015368) #22	RANBP3 (ENSODEG00000015257) #23	CAPS (ENSODEG00000016529)	VMAC (ENSODEG00000014819) #24	NDUFA11 (ENSODEG00000015123) #25	NRTN (ENSODEG00000014997) #26	DUS3L (ENSODEG00000015771) #27	PRR22 (ENSODEG00000015287) #28	LONP1 (ENSODEG00000015069) #30	ENSODEG00000017182 #32	MICOS13 (ENSODEG00000016327) #33	SAFB (ENSODEG00000014838) #34	SAFB2 (ENSODEG00000014751) #35	ENSODEG00000015112	PTPRS (ENSODEG00000015678) #37	KDM4B (ENSODEG00000014383)
Guinea pig	MODERN SPECIES	229	ENSCPOG00000022803 #8	TUBB4A (ENSCPOG00000003237) #10	DENND1C (ENSCPOG00000003232) #11	CRB3 (ENSCPOG00000024888) #12	SLC25A23 (ENSCPOG00000011096) #13	SLC25A41 (ENSCPOG00000029988)	KHSRP (ENSCPOG00000005140) #14	GTF2F1 (ENSCPOG00000012632) #15	PSPN (ENSCPOG00000038963) #16	ALKBH7 (ENSCPOG00000013958) #17	CLPP (ENSCPOG00000013954) #18	ACER1 (ENSCPOG00000021961) #19	MLLT1 (ENSCPOG00000001260) #20	ENSCPOG00000025754	ENSCPOG00000014317 #21	RFX2 (ENSCPOG00000024260) #22	RANBP3 (ENSCPOG00000021646) #23	CAPS (ENSCPOG00000026058)	VMAC (ENSCPOG00000014675) #24	NDUFA11 (ENSCPOG00000019390) #25	ENSCPOG00000037079	ENSCPOG00000037083	NRTN (ENSCPOG00000037952) #26	DUS3L (ENSCPOG00000021236) #27	PRR22 (ENSCPOG00000031470) #28
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000008762	ENSHGLG00000041462	CD70 (ENSHGLG00000013155) #8	ENSHGLG00000021141	TNFSF14 (ENSHGLG00000041682) #7	GPR108 (ENSHGLG00000010354)	TRIP10 (ENSHGLG00000006018)	SH2D3A (ENSHGLG00000030969)	ENSHGLG00000007716	ENSHGLG00000011025 #19	MLLT1 (ENSHGLG00000011819) #20	ENSHGLG00000044003	ENSHGLG00000049237 #21	ENSHGLG00000014805	ENSHGLG00000044408	RFX2 (ENSHGLG00000015258) #22	RANBP3 (ENSHGLG00000015535) #23	CAPS (ENSHGLG00000033681)	ENSHGLG00000032314 #24	ENSHGLG00000014115 #25	ENSHGLG00000044894	ENSHGLG00000014195	ENSHGLG00000037047	ENSHGLG00000046495	NRTN (ENSHGLG00000014364) #26	DUS3L (ENSHGLG00000013475) #27	PRR22 (ENSHGLG00000043073) #28	CATSPERD (ENSHGLG00000032633) #29	LONP1 (ENSHGLG00000013886) #30	ENSHGLG00000013869 #32	MICOS13 (ENSHGLG00000032110) #33
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.e #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.e #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Squirrel	MODERN SPECIES	188	ENSSTOG00000002404 #11	CRB3 (ENSSTOG00000029565) #12	SLC25A23 (ENSSTOG00000002387) #13	SLC25A41 (ENSSTOG00000023022)	KHSRP (ENSSTOG00000002371) #14	ENSSTOG00000032166	GTF2F1 (ENSSTOG00000025689) #15	PSPN (ENSSTOG00000023397) #16	ALKBH7 (ENSSTOG00000002368) #17	CLPP (ENSSTOG00000028013) #18	ACER1 (ENSSTOG00000002348) #19	ENSSTOG00000022476	MLLT1 (ENSSTOG00000002340) #20	ENSSTOG00000019704	ENSSTOG00000007511 #21	RFX2 (ENSSTOG00000027723) #22	ENSSTOG00000034262 #23	RANBP3 (ENSSTOG00000006462) #23	CAPS (ENSSTOG00000006493)	VMAC (ENSSTOG00000012822) #24	NDUFA11 (ENSSTOG00000028356) #25	ENSSTOG00000022255	NRTN (ENSSTOG00000009542) #26	DUS3L (ENSSTOG00000025017) #27	PRR22 (ENSSTOG00000025571) #28	LONP1 (ENSSTOG00000019884) #30	ENSSTOG00000020518 ##32	HSD11B1L (ENSSTOG00000027416) #31	MICOS13 (ENSSTOG00000002814) #33	SAFB (ENSSTOG00000002783) #34	ENSSTOG00000002758 #35
Arctic ground squirrel	MODERN SPECIES	301	TUBB4A (ENSUPAG00010023665) #10	DENND1C (ENSUPAG00010023662) #11	ENSUPAG00010023661 #12	SLC25A23 (ENSUPAG00010023660) #13	SLC25A41 (ENSUPAG00010023658)	KHSRP (ENSUPAG00010023657) #14	ENSUPAG00010023656	GTF2F1 (ENSUPAG00010023655) #15	PSPN (ENSUPAG00010023654) #16	ALKBH7 (ENSUPAG00010023653) #17	CLPP (ENSUPAG00010023652) #18	ACER1 (ENSUPAG00010023651) #19	MLLT1 (ENSUPAG00010023650) #20	ENSUPAG00010023649	ACSBG2 (ENSUPAG00010023648) #21	RFX2 (ENSUPAG00010023647) #22	RANBP3 (ENSUPAG00010023645) #23	CAPS (ENSUPAG00010023646)	VMAC (ENSUPAG00010023644) #24	ENSUPAG00010023643 #25	ENSUPAG00010023642	NRTN (ENSUPAG00010023641) #26	DUS3L (ENSUPAG00010023640) #27	PRR22 (ENSUPAG00010023639) #28	LONP1 (ENSUPAG00010023636) #30	RPL36 (ENSUPAG00010023635) #32	HSD11B1L (ENSUPAG00010023634) #31	MICOS13 (ENSUPAG00010023633) #33	SAFB (ENSUPAG00010023630) #34	SAFB2 (ENSUPAG00010023625) #35	ENSUPAG00010023624
Alpin marmot	MODERN SPECIES	88	TNFSF9 (ENSMMMG00000019570) #9	TUBB4A (ENSMMMG00000019550) #10	DENND1C (ENSMMMG00000019533) #11	ENSMMMG00000019517 #12	SLC25A23 (ENSMMMG00000019504) #13	SLC25A41 (ENSMMMG00000019493)	KHSRP (ENSMMMG00000019257) #14	ENSMMMG00000019249	PSPN (ENSMMMG00000019228) #16	ALKBH7 (ENSMMMG00000019225) #17	CLPP (ENSMMMG00000019216) #18	ACER1 (ENSMMMG00000019214) #19	MLLT1 (ENSMMMG00000019206) #20	ENSMMMG00000019196	ACSBG2 (ENSMMMG00000019139) #21	RFX2 (ENSMMMG00000019107) #22	ENSMMMG00000019101 #23	RANBP3 (ENSMMMG00000019085) #23	CAPS (ENSMMMG00000019062)	VMAC (ENSMMMG00000019061) #24	NDUFA11 (ENSMMMG00000019059) #25	NRTN (ENSMMMG00000019052) #26	DUS3L (ENSMMMG00000019016) #27	LONP1 (ENSMMMG00000018859) #30	HSD11B1L (ENSMMMG00000018842) #31	MICOS13 (ENSMMMG00000018836) #33	SAFB (ENSMMMG00000018807) #34	SAFB2 (ENSMMMG00000018701) #35	ENSMMMG00000018676 #37	ENSMMMG00000018660 #37	KDM4B (ENSMMMG00000018611)
Eurasian red squirrel	MODERN SPECIES	7	TUBB4A (ENSSVLG00005023819) #10	DENND1C (ENSSVLG00005023643) #11	CRB3 (ENSSVLG00005023581) #12	SLC25A23 (ENSSVLG00005023541) #13	SLC25A41 (ENSSVLG00005023479)	KHSRP (ENSSVLG00005023444) #14	ENSSVLG00005023383	GTF2F1 (ENSSVLG00005023301) #15	PSPN (ENSSVLG00005023279) #16	ALKBH7 (ENSSVLG00005023240) #17	CLPP (ENSSVLG00005023216) #18	ACER1 (ENSSVLG00005023163) #19	MLLT1 (ENSSVLG00005023111) #20	ENSSVLG00005022830	ACSBG2 (ENSSVLG00005022613) #21	RFX2 (ENSSVLG00005022368) #22	RANBP3 (ENSSVLG00005022208) #23	CAPS (ENSSVLG00005022099)	VMAC (ENSSVLG00005022064) #24	NDUFA11 (ENSSVLG00005022032) #25	ENSSVLG00005021990	NRTN (ENSSVLG00005021968) #26	DUS3L (ENSSVLG00005021792) #27	PRR22 (ENSSVLG00005021755) #28	LONP1 (ENSSVLG00005021189) #30	ENSSVLG00005021082 ##32	HSD11B1L (ENSSVLG00005020980) #31	MICOS13 (ENSSVLG00005020922) #33	SAFB (ENSSVLG00005020852) #34	SAFB2 (ENSSVLG00005020804) #35	ENSSVLG00005020769
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Kangaroo rat	MODERN SPECIES	383	Tnfsf14 (ENSDORG00000028843) #7	Tubb4a (ENSDORG00000030020) #10	ENSDORG00000029765 #11	Crb3 (ENSDORG00000002452) #12	Slc25a41 (ENSDORG00000002448)	Khsrp (ENSDORG00000002447) #14	Gm17949 (ENSDORG00000002446)	Gtf2f1 (ENSDORG00000002445) #15	Pspn (ENSDORG00000002443) #16	Alkbh7 (ENSDORG00000002441) #17	Clpp (ENSDORG00000002435) #18	Acer1 (ENSDORG00000013614) #19	Mllt1 (ENSDORG00000006056) #20	Acsbg3 (ENSDORG00000026047)	Acsbg2 (ENSDORG00000024853) #21	Rfx2 (ENSDORG00000008083) #22	Ranbp3 (ENSDORG00000003144) #23	ENSDORG00000003143	Vmac (ENSDORG00000029939) #24	Ndufa11 (ENSDORG00000003140) #25	Dus3l (ENSDORG00000006754) #27	Lonp1 (ENSDORG00000016207) #30	Rpl36 (ENSDORG00000025864) ##32	ENSDORG00000016206 #31	Micos13 (ENSDORG00000016204) #33	Safb (ENSDORG00000016200) #34	Safb2 (ENSDORG00000016199) #35	Ptprs (ENSDORG00000006297) #37	Kdm4b (ENSDORG00000008375)	Uhrf1 (ENSDORG00000013642)	Arrdc5 (ENSDORG00000013640)
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Chinese hamster chok1gshd	MODERN SPECIES	2	Tubb4a (ENSCGRG00001001011) #10	Dennd1c (ENSCGRG00001020022) #11	Crb3 (ENSCGRG00001021736) #12	Slc25a23 (ENSCGRG00001023449) #13	Slc25a41 (ENSCGRG00001000917)	Khsrp (ENSCGRG00001011031) #14	Gm17949 (ENSCGRG00001006952)	Gtf2f1 (ENSCGRG00001006209) #15	Pspn (ENSCGRG00001017826) #16	Alkbh7 (ENSCGRG00001019380) #17	Clpp (ENSCGRG00001019808) #18	Acer1 (ENSCGRG00001016857) #19	Mllt1 (ENSCGRG00001018607) #20	Acsbg3 (ENSCGRG00001021403)	Acsbg2 (ENSCGRG00001001208) #21	Rfx2 (ENSCGRG00001008783) #22	Prr22 (ENSCGRG00001022202) #28	Dus3l (ENSCGRG00001023361) #27	Nrtn (ENSCGRG00001024492) #26	ENSCGRG00001008918	Ndufa11 (ENSCGRG00001023471) #25	Vmac (ENSCGRG00001023793) #24	ENSCGRG00001021756	Ranbp3 (ENSCGRG00001022677) #23	Catsperd (ENSCGRG00001010087) #29	Lonp1 (ENSCGRG00001021835) #30	ENSCGRG00001020793 #32	Safb (ENSCGRG00001002254) #34	Micos13 (ENSCGRG00001016715) #33	Safb2 (ENSCGRG00001015833) #35	Tincr (ENSCGRG00001024474)
Golden Hamster	MODERN SPECIES	730	Tubb4a (ENSMAUG00000017901) #10	Dennd1c (ENSMAUG00000006409) #11	Crb3 (ENSMAUG00000019988) #12	ENSMAUG00000000871 #13	Slc25a41 (ENSMAUG00000014724)	Khsrp (ENSMAUG00000018966) #14	Gm17949 (ENSMAUG00000018260)	ENSMAUG00000015346 #15	Pspn (ENSMAUG00000019121) #16	Alkbh7 (ENSMAUG00000000800) #17	Clpp (ENSMAUG00000021469) #18	Acer1 (ENSMAUG00000012781) #19	Mllt1 (ENSMAUG00000011374) #20	Acsbg3 (ENSMAUG00000014035)	Acsbg2 (ENSMAUG00000017399) #21	Rfx2 (ENSMAUG00000018587) #22	Prr22 (ENSMAUG00000003201) #28	Dus3l (ENSMAUG00000008347) #27	Nrtn (ENSMAUG00000001043) #26	Ndufa11 (ENSMAUG00000021572) #25	Vmac (ENSMAUG00000009455) #24	ENSMAUG00000013827	Ranbp3 (ENSMAUG00000011228) #23	Catsperd (ENSMAUG00000009178) #29	Lonp1 (ENSMAUG00000013293) #30	ENSMAUG00000018691 ##32	Safb2 (ENSMAUG00000011573) #35	Tincr (ENSMAUG00000006706)	Znrf4 (ENSMAUG00000008614)	Ptprs (ENSMAUG00000003364) #37	Kdm4b (ENSMAUG00000022140)
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a.a.b ##32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837
Northern American deer mouse	MODERN SPECIES	14	Tubb4a (ENSPEMG00000028633) #10	Dennd1c (ENSPEMG00000023860) #11	Crb3 (ENSPEMG00000021919) #12	Slc25a23 (ENSPEMG00000021021) #13	Slc25a41 (ENSPEMG00000020675)	Khsrp (ENSPEMG00000022853) #14	Gm17949 (ENSPEMG00000026776)	Gtf2f1 (ENSPEMG00000011236) #15	Pspn (ENSPEMG00000008246) #16	Alkbh7 (ENSPEMG00000016536) #17	Clpp (ENSPEMG00000009546) #18	Acer1 (ENSPEMG00000021242) #19	Mllt1 (ENSPEMG00000020708) #20	Acsbg3 (ENSPEMG00000022840)	Acsbg2 (ENSPEMG00000014725) #21	Rfx2 (ENSPEMG00000021291) #22	Prr22 (ENSPEMG00000014824) #28	Dus3l (ENSPEMG00000020784) #27	Nrtn (ENSPEMG00000014960) #26	ENSPEMG00000031186	Ndufa11 (ENSPEMG00000020648) #25	ENSPEMG00000026816	ENSPEMG00000020906	Ranbp3 (ENSPEMG00000020448) #23	Lonp1 (ENSPEMG00000020753) #30	ENSPEMG00000014036 ##32	Micos13 (ENSPEMG00000009993) #33	Safb (ENSPEMG00000020428) #34	Safb2 (ENSPEMG00000016015) #35	Tincr (ENSPEMG00000023023)	Znrf4 (ENSPEMG00000006665)
Prairie vole	MODERN SPECIES	181	Tubb4a (ENSMOCG00000015551) #10	ENSMOCG00000001187 #11	Crb3 (ENSMOCG00000000421) #12	Slc25a23 (ENSMOCG00000014701) #13	Slc25a41 (ENSMOCG00000013299)	Khsrp (ENSMOCG00000018305) #14	Gm17949 (ENSMOCG00000016801)	Gtf2f1 (ENSMOCG00000000296) #15	Pspn (ENSMOCG00000014015) #16	Alkbh7 (ENSMOCG00000004923) #17	Clpp (ENSMOCG00000015784) #18	Acer1 (ENSMOCG00000002295) #19	Mllt1 (ENSMOCG00000020318) #20	Acsbg3 (ENSMOCG00000008516)	Acsbg2 (ENSMOCG00000000050) #21	Rfx2 (ENSMOCG00000012338) #22	Prr22 (ENSMOCG00000007432) #28	Dus3l (ENSMOCG00000021796) #27	Nrtn (ENSMOCG00000015675) #26	ENSMOCG00000006283	ENSMOCG00000001594 #25	Vmac (ENSMOCG00000001137) #24	Ranbp3 (ENSMOCG00000000298) #23	Catsperd (ENSMOCG00000000634) #29	Lonp1 (ENSMOCG00000007391) #30	ENSMOCG00000013679 ##32	Micos13 (ENSMOCG00000005993) #33	Safb (ENSMOCG00000014040) #34	Safb2 (ENSMOCG00000006827) #35	Tincr (ENSMOCG00000016977)	Ptprs (ENSMOCG00000015299) #37
Murinae	ANCESTRAL SPECIES	38	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000162442	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061
Mus	ANCESTRAL SPECIES	16	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00390000012434 #25	ENSGT00390000007212 #24	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00390000012434.k #25	ENSGT00390000007212 #24	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00390000012434.k #25	ENSGT00390000007212 #24	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00390000012434.k #25	ENSGT00390000007212 #24	ENSGT00940000158588 #23	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00390000002629 #33	ENSGT00940000161482 #35	ENSGT01010000222837	ENSGT00940000163061	ENSGT00940000153617.A.b #37	ENSGT00940000159248
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716) #10	MGP_SPRETEiJ_G0022715 #11	Crb3 (MGP_SPRETEiJ_G0022714) #12	Slc25a23 (MGP_SPRETEiJ_G0022713) #13	Slc25a41 (MGP_SPRETEiJ_G0022712)	Khsrp (MGP_SPRETEiJ_G0022711) #14	Gtf2f1 (MGP_SPRETEiJ_G0022710) #15	Pspn (MGP_SPRETEiJ_G0022709) #16	Alkbh7 (MGP_SPRETEiJ_G0022708) #17	Clpp (MGP_SPRETEiJ_G0022707) #18	Acer1 (MGP_SPRETEiJ_G0022706) #19	Mllt1 (MGP_SPRETEiJ_G0022705) #20	Acsbg3 (MGP_SPRETEiJ_G0022704)	Acsbg2 (MGP_SPRETEiJ_G0022703) #21	Rfx2 (MGP_SPRETEiJ_G0022702) #22	Prr22 (MGP_SPRETEiJ_G0022701) #28	Dus3l (MGP_SPRETEiJ_G0022700) #27	Nrtn (MGP_SPRETEiJ_G0022699) #26	Ndufa11 (MGP_SPRETEiJ_G0022698) #25	Vmac (MGP_SPRETEiJ_G0022697) #24	Ranbp3 (MGP_SPRETEiJ_G0022696) #23	Catsperd (MGP_SPRETEiJ_G0022695) #29	Lonp1 (MGP_SPRETEiJ_G0022694) #30	MGP_SPRETEiJ_G0022693 #32	Micos13 (MGP_SPRETEiJ_G0022692) #33	MGP_SPRETEiJ_G0022691	Safb2 (MGP_SPRETEiJ_G0022690) #35	Znrf4 (MGP_SPRETEiJ_G0022689)	Ptprs (MGP_SPRETEiJ_G0022688) #37	Kdm4b (MGP_SPRETEiJ_G0022687)
Steppe mouse	MODERN SPECIES	2657	Tubb4a (ENSMSIG00000021731) #10	Dennd1c (ENSMSIG00000021743) #11	Crb3 (ENSMSIG00000021794) #12	Slc25a23 (ENSMSIG00000021822) #13	Slc25a41 (ENSMSIG00000021849)	Khsrp (ENSMSIG00000021874) #14	Gm17949 (ENSMSIG00000021931)	Gtf2f1 (ENSMSIG00000021940) #15	Pspn (ENSMSIG00000021975) #16	Alkbh7 (ENSMSIG00000021986) #17	Clpp (ENSMSIG00000022008) #18	Acer1 (ENSMSIG00000022023) #19	Mllt1 (ENSMSIG00000022050) #20	Acsbg3 (ENSMSIG00000022123)	Acsbg2 (ENSMSIG00000022144) #21	Rfx2 (ENSMSIG00000022188) #22	Prr22 (ENSMSIG00000022272) #28	Dus3l (ENSMSIG00000022291) #27	Nrtn (ENSMSIG00000022315) #26	ENSMSIG00000022323 #25	Vmac (ENSMSIG00000022334) #24	Ranbp3 (ENSMSIG00000022350) #23	Catsperd (ENSMSIG00000022478) #29	Lonp1 (ENSMSIG00000022544) #30	ENSMSIG00000022557 #32	ENSMSIG00000022566 #33
Mouse	MODERN SPECIES	8	Tubb4a (ENSMUSG00000062591) #10	Dennd1c (ENSMUSG00000002668) #11	Crb3 (ENSMUSG00000044279) #12	Slc25a23 (ENSMUSG00000046329) #13	Slc25a41 (ENSMUSG00000011486)	Khsrp (ENSMUSG00000007670) #14	Gm17949 (ENSMUSG00000109739)	Gtf2f1 (ENSMUSG00000002658) #15	Pspn (ENSMUSG00000002664) #16	Alkbh7 (ENSMUSG00000002661) #17	Clpp (ENSMUSG00000002660) #18	Acer1 (ENSMUSG00000045019) #19	Mllt1 (ENSMUSG00000024212) #20	Acsbg3 (ENSMUSG00000024209)	Acsbg2 (ENSMUSG00000024207) #21	Rfx2 (ENSMUSG00000024206) #22	Prr22 (ENSMUSG00000090273) #28	Dus3l (ENSMUSG00000007603) #27	Nrtn (ENSMUSG00000039481) #26	Ndufa11 (ENSMUSG00000002379) #25	Vmac (ENSMUSG00000054723) #24	Ranbp3 (ENSMUSG00000002372) #23	Catsperd (ENSMUSG00000040828) #29	Lonp1 (ENSMUSG00000041168) #30	Rpl36 (ENSMUSG00000057863) ##32	Micos13 (ENSMUSG00000049760) #33	Safb (ENSMUSG00000071054) #34	Safb2 (ENSMUSG00000042625) #35	Tincr (ENSMUSG00000110218)	Znrf4 (ENSMUSG00000044526)	Ptprs (ENSMUSG00000013236) #37
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805) #10	Dennd1c (MGP_CAROLIEiJ_G0021804) #11	Crb3 (MGP_CAROLIEiJ_G0021803) #12	Slc25a23 (MGP_CAROLIEiJ_G0021802) #13	Slc25a41 (MGP_CAROLIEiJ_G0021801)	Khsrp (MGP_CAROLIEiJ_G0021800) #14	Gtf2f1 (MGP_CAROLIEiJ_G0021799) #15	Pspn (MGP_CAROLIEiJ_G0021798) #16	Alkbh7 (MGP_CAROLIEiJ_G0021797) #17	Clpp (MGP_CAROLIEiJ_G0021796) #18	Acer1 (MGP_CAROLIEiJ_G0021795) #19	Mllt1 (MGP_CAROLIEiJ_G0021794) #20	Acsbg3 (MGP_CAROLIEiJ_G0021793)	Acsbg2 (MGP_CAROLIEiJ_G0021792) #21	Rfx2 (MGP_CAROLIEiJ_G0021791) #22	Prr22 (MGP_CAROLIEiJ_G0021790) #28	Dus3l (MGP_CAROLIEiJ_G0021789) #27	Nrtn (MGP_CAROLIEiJ_G0021788) #26	Ndufa11 (MGP_CAROLIEiJ_G0021787) #25	Vmac (MGP_CAROLIEiJ_G0021786) #24	Ranbp3 (MGP_CAROLIEiJ_G0021785) #23	Catsperd (MGP_CAROLIEiJ_G0021784) #29	Lonp1 (MGP_CAROLIEiJ_G0021783) #30	MGP_CAROLIEiJ_G0021782 #32	Micos13 (MGP_CAROLIEiJ_G0021781) #33	Safb (MGP_CAROLIEiJ_G0021780) #34	Safb2 (MGP_CAROLIEiJ_G0021779) #35	Znrf4 (MGP_CAROLIEiJ_G0021778)	Ptprs (MGP_CAROLIEiJ_G0021777) #37	Kdm4b (MGP_CAROLIEiJ_G0021776)
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794) #10	Dennd1c (MGP_PahariEiJ_G0020793) #11	Crb3 (MGP_PahariEiJ_G0020792) #12	Slc25a23 (MGP_PahariEiJ_G0020791) #13	Slc25a41 (MGP_PahariEiJ_G0020790)	Khsrp (MGP_PahariEiJ_G0020789) #14	Gtf2f1 (MGP_PahariEiJ_G0020788) #15	Pspn (MGP_PahariEiJ_G0020787) #16	Alkbh7 (MGP_PahariEiJ_G0020786) #17	Clpp (MGP_PahariEiJ_G0020785) #18	Acer1 (MGP_PahariEiJ_G0020784) #19	Mllt1 (MGP_PahariEiJ_G0020783) #20	Acsbg3 (MGP_PahariEiJ_G0020782)	Acsbg2 (MGP_PahariEiJ_G0020781) #21	Rfx2 (MGP_PahariEiJ_G0020780) #22	Prr22 (MGP_PahariEiJ_G0020779) #28	Dus3l (MGP_PahariEiJ_G0020778) #27	Nrtn (MGP_PahariEiJ_G0020777) #26	Ndufa11 (MGP_PahariEiJ_G0020776) #25	Vmac (MGP_PahariEiJ_G0020775) #24	Ranbp3 (MGP_PahariEiJ_G0020774) #23	Catsperd (MGP_PahariEiJ_G0020773) #29	Lonp1 (MGP_PahariEiJ_G0020772) #30	MGP_PahariEiJ_G0020771 #32	Micos13 (MGP_PahariEiJ_G0020770) #33	Safb (MGP_PahariEiJ_G0020769) #34	Safb2 (MGP_PahariEiJ_G0020768) #35	Znrf4 (MGP_PahariEiJ_G0020767)	Ptprs (MGP_PahariEiJ_G0020766) #37	Kdm4b (MGP_PahariEiJ_G0020765)
Rat	MODERN SPECIES	19	Tubb4a (ENSRNOG00000047505) #10	Dennd1c (ENSRNOG00000046050) #11	Crb3 (ENSRNOG00000070099) #12	Slc25a23 (ENSRNOG00000047781) #13	Slc25a41 (ENSRNOG00000048853)	Khsrp (ENSRNOG00000047628) #14	Gm17949 (ENSRNOG00000064877)	Gtf2f1 (ENSRNOG00000047134) #15	Pspn (ENSRNOG00000071190) #16	Alkbh7 (ENSRNOG00000047089) #17	Clpp (ENSRNOG00000047052) #18	Acer1 (ENSRNOG00000047368) #19	Mllt1 (ENSRNOG00000048736) #20	Acsbg3 (ENSRNOG00000047549)	Acsbg2 (ENSRNOG00000045947) #21	Rfx2 (ENSRNOG00000045846) #22	Prr22 (ENSRNOG00000047295) #28	Dus3l (ENSRNOG00000050381) #27	Nrtn (ENSRNOG00000048651) #26	Ndufa11 (ENSRNOG00000048320) #25	Vmac (ENSRNOG00000065863) #24	Caps (ENSRNOG00000063246)	Ranbp3 (ENSRNOG00000049785) #23	Catsperd (ENSRNOG00000048818) #29	Lonp1 (ENSRNOG00000046502) #30	Micos13 (ENSRNOG00000046002) #33	Safb (ENSRNOG00000050543) #34	Safb2 (ENSRNOG00000049511) #35	Znrf4 (ENSRNOG00000048875)	Ptprs (ENSRNOG00000047247) #37	Kdm4b (ENSRNOG00000049221)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Tnfsf14 (ENSNGAG00000023106) #7	Cd70 (ENSNGAG00000013982) #8	Tubb4a (ENSNGAG00000019498) #10	Dennd1c (ENSNGAG00000015322) #11	Crb3 (ENSNGAG00000023048) #12	Slc25a23 (ENSNGAG00000023065) #13	Slc25a41 (ENSNGAG00000019185)	Khsrp (ENSNGAG00000023093) #14	Gm17949 (ENSNGAG00000023078)	Gtf2f1 (ENSNGAG00000023277) #15	Pspn (ENSNGAG00000022337) #16	Alkbh7 (ENSNGAG00000018037) #17	Clpp (ENSNGAG00000020943) #18	Acer1 (ENSNGAG00000021750) #19	Mllt1 (ENSNGAG00000015361) #20	Rfx2 (ENSNGAG00000018829) #22	Prr22 (ENSNGAG00000023052) #28	Dus3l (ENSNGAG00000017157) #27	Nrtn (ENSNGAG00000021333) #26	Ndufa11 (ENSNGAG00000017779) #25	Vmac (ENSNGAG00000016642) #24	Ranbp3 (ENSNGAG00000015130) #23	Catsperd (ENSNGAG00000021716) #29	Lonp1 (ENSNGAG00000018118) #30	ENSNGAG00000021002 #32	ENSNGAG00000022750 #31	ENSNGAG00000021672 #33	Safb (ENSNGAG00000019882) #34	ENSNGAG00000018473 #35	Tincr (ENSNGAG00000021324)	Ptprs (ENSNGAG00000019407) #37
Lesser Egyptian jerboa	MODERN SPECIES	55	Tubb4a (ENSJJAG00000001103) #10	ENSJJAG00000023239 #11	Crb3 (ENSJJAG00000017361) #12	Slc25a23 (ENSJJAG00000018390) #13	Slc25a41 (ENSJJAG00000009731)	Khsrp (ENSJJAG00000006370) #14	Gm17949 (ENSJJAG00000017204)	Gtf2f1 (ENSJJAG00000016614) #15	Pspn (ENSJJAG00000023140) #16	Alkbh7 (ENSJJAG00000023908) #17	ENSJJAG00000019233 #18	Acer1 (ENSJJAG00000018285) #19	Mllt1 (ENSJJAG00000017227) #20	Acsbg3 (ENSJJAG00000021099)	Acsbg2 (ENSJJAG00000022623) #21	Rfx2 (ENSJJAG00000009362) #22	Prr22 (ENSJJAG00000020858) #28	Dus3l (ENSJJAG00000023742) #27	Nrtn (ENSJJAG00000016578) #26	Ndufa11 (ENSJJAG00000023264) #25	Vmac (ENSJJAG00000021312) #24	ENSJJAG00000017779	Ranbp3 (ENSJJAG00000007163) #23	Lonp1 (ENSJJAG00000021237) #30	ENSJJAG00000020144 ##32	ENSJJAG00000023960 #33	Safb (ENSJJAG00000009021) #34	ENSJJAG00000015942 #35	Tincr (ENSJJAG00000015733)	Znrf4 (ENSJJAG00000015898)	Ptprs (ENSJJAG00000022069) #37
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00390000011943.a.a.a.a ##32	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Canidae	ANCESTRAL SPECIES		ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00390000011943.a.a.a.a ##32	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00390000011943.a.a.a.a ##32	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Dog	MODERN SPECIES	12	TUBB4A (ENSCAFG00845010611) #10	DENND1C (ENSCAFG00845010702) #11	CRB3 (ENSCAFG00845010829) #12	SLC25A23 (ENSCAFG00845010879) #13	SLC25A41 (ENSCAFG00845010943)	KHSRP (ENSCAFG00845011000) #14	ENSCAFG00845011160	GTF2F1 (ENSCAFG00845011192) #15	PSPN (ENSCAFG00845011239) #16	ALKBH7 (ENSCAFG00845011262) #17	CLPP (ENSCAFG00845011300) #18	ACER1 (ENSCAFG00845011353) #19	MLLT1 (ENSCAFG00845011430) #20	ENSCAFG00845011637	ACSBG2 (ENSCAFG00845011716) #21	RFX2 (ENSCAFG00845011818) #22	RANBP3 (ENSCAFG00845012047) #23	CAPS (ENSCAFG00845012225)	NDUFA11 (ENSCAFG00845012269) #25	FUT5 (ENSCAFG00845012290)	NRTN (ENSCAFG00845012314) #26	ENSCAFG00845012403 #26	DUS3L (ENSCAFG00845012465) #27	PRR22 (ENSCAFG00845012648) #28	LONP1 (ENSCAFG00845012796) #30	ENSCAFG00845012967 #32	HSD11B1L (ENSCAFG00845013008) #31	MICOS13 (ENSCAFG00845013062) #33	SAFB (ENSCAFG00845013214) #34	SAFB2 (ENSCAFG00845013411) #35	ENSCAFG00845013596
Dingo	MODERN SPECIES	112	CRB3 (ENSCAFG00020019301) #12	SLC25A23 (ENSCAFG00020019295) #13	SLC25A41 (ENSCAFG00020019291)	KHSRP (ENSCAFG00020019133) #14	ENSCAFG00020019100	GTF2F1 (ENSCAFG00020019099) #15	PSPN (ENSCAFG00020019098) #16	ALKBH7 (ENSCAFG00020019096) #17	CLPP (ENSCAFG00020019094) #18	ACER1 (ENSCAFG00020019092) #19	MLLT1 (ENSCAFG00020019087) #20	ENSCAFG00020019056	ENSCAFG00020019051	ENSCAFG00020019050 #21	ENSCAFG00020019048 #21	RFX2 (ENSCAFG00020019038) #22	RANBP3 (ENSCAFG00020019018) #23	CAPS (ENSCAFG00020019013)	VMAC (ENSCAFG00020019007) #24	NDUFA11 (ENSCAFG00020019004) #25	ENSCAFG00020019002	ENSCAFG00020018996 #26	ENSCAFG00020018993	ENSCAFG00020018986 #26	ENSCAFG00020018983 #26	DUS3L (ENSCAFG00020018976) #27	PRR22 (ENSCAFG00020018973) #28	CATSPERD (ENSCAFG00020018972) #29	ENSCAFG00020018966 ##32	LONP1 (ENSCAFG00020018954) #30	HSD11B1L (ENSCAFG00020018952) #31
Red fox	MODERN SPECIES	278	ENSVVUG00000026690 #10	DENND1C (ENSVVUG00000026697) #11	CRB3 (ENSVVUG00000026716) #12	SLC25A23 (ENSVVUG00000026718) #13	SLC25A41 (ENSVVUG00000026725)	KHSRP (ENSVVUG00000026737) #14	ENSVVUG00000026889	GTF2F1 (ENSVVUG00000026891) #15	PSPN (ENSVVUG00000026892) #16	ALKBH7 (ENSVVUG00000026894) #17	CLPP (ENSVVUG00000026895) #18	ACER1 (ENSVVUG00000026897) #19	MLLT1 (ENSVVUG00000026899) #20	ENSVVUG00000026901	ACSBG2 (ENSVVUG00000026905) #21	RFX2 (ENSVVUG00000026908) #22	RANBP3 (ENSVVUG00000026909) #23	VMAC (ENSVVUG00000026915) #24	NDUFA11 (ENSVVUG00000026918) #25
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT00940000163061
American black bear	MODERN SPECIES	4632																RFX2 (ENSUAMG00000022718) #22	RANBP3 (ENSUAMG00000022717) #23	VMAC (ENSUAMG00000022715) #24	NDUFA11 (ENSUAMG00000022714) #25
Polar bear	MODERN SPECIES	455	ENSUMAG00000011240 #9	TUBB4A (ENSUMAG00000011205) #10	DENND1C (ENSUMAG00000011179) #11	SLC25A23 (ENSUMAG00000011176) #13	SLC25A41 (ENSUMAG00000011173)	KHSRP (ENSUMAG00000011144) #14	ENSUMAG00000011130	ENSUMAG00000011125 #15	ALKBH7 (ENSUMAG00000011121) #17	CLPP (ENSUMAG00000011118) #18	ACER1 (ENSUMAG00000011114) #19	MLLT1 (ENSUMAG00000011106) #20	ENSUMAG00000011083	ENSUMAG00000011074	ACSBG2 (ENSUMAG00000011013) #21	RFX2 (ENSUMAG00000010908) #22	RANBP3 (ENSUMAG00000010878) #23	CAPS (ENSUMAG00000010864)	NDUFA11 (ENSUMAG00000010857) #25	ENSUMAG00000010843	DUS3L (ENSUMAG00000010831) #27	ENSUMAG00000010828 #28	CATSPERD (ENSUMAG00000010820) #29	LONP1 (ENSUMAG00000010376) #30	HSD11B1L (ENSUMAG00000010290) #31	ENSUMAG00000010279 #33	SAFB (ENSUMAG00000009734) #34	SAFB2 (ENSUMAG00000009585) #35	PTPRS (ENSUMAG00000009076) #37	KDM4B (ENSUMAG00000008806)	UHRF1 (ENSUMAG00000008785)
Giant Panda	MODERN SPECIES	14	TUBB4A (ENSAMEG00000029200) #10	DENND1C (ENSAMEG00000007101) #11	CRB3 (ENSAMEG00000007097) #12	SLC25A23 (ENSAMEG00000007035) #13	SLC25A41 (ENSAMEG00000007032)	KHSRP (ENSAMEG00000006978) #14	ENSAMEG00000006968	GTF2F1 (ENSAMEG00000006933) #15	PSPN (ENSAMEG00000006930) #16	ALKBH7 (ENSAMEG00000006925) #17	CLPP (ENSAMEG00000029863) #18	ACER1 (ENSAMEG00000023660) #19	MLLT1 (ENSAMEG00000006860) #20	ENSAMEG00000006856	ACSBG2 (ENSAMEG00000006804) #21	RFX2 (ENSAMEG00000007745) #22	CAPS (ENSAMEG00000007894)	VMAC (ENSAMEG00000007913) #24	RANBP3 (ENSAMEG00000007819) #23	ENSAMEG00000018817	NRTN (ENSAMEG00000028449) #26	DUS3L (ENSAMEG00000012423) #27	PRR22 (ENSAMEG00000030882) #28	CATSPERD (ENSAMEG00000012399) #29	RPL36 (ENSAMEG00000012349) ##32	LONP1 (ENSAMEG00000012350) #30	HSD11B1L (ENSAMEG00000012322) #31	MICOS13 (ENSAMEG00000012320) #33	ENSAMEG00000012254 #34	SAFB2 (ENSAMEG00000012146) #35	ENSAMEG00000027102
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT00940000163061
American mink	MODERN SPECIES	175	DENND1C (ENSNVIG00000015781) #11	CRB3 (ENSNVIG00000015751) #12	SLC25A23 (ENSNVIG00000015735) #13	SLC25A41 (ENSNVIG00000015722)	KHSRP (ENSNVIG00000015567) #14	ENSNVIG00000015514	GTF2F1 (ENSNVIG00000015498) #15	PSPN (ENSNVIG00000015490) #16	ENSNVIG00000015472 #18	ALKBH7 (ENSNVIG00000015449) #17	ENSNVIG00000015434 #18	ACER1 (ENSNVIG00000015426) #19	MLLT1 (ENSNVIG00000015422) #20	ENSNVIG00000015289	ACSBG2 (ENSNVIG00000015209) #21	RFX2 (ENSNVIG00000015069) #22	RANBP3 (ENSNVIG00000014853) #23	CAPS (ENSNVIG00000014785)	VMAC (ENSNVIG00000014779) #24	NDUFA11 (ENSNVIG00000014768) #25	NRTN (ENSNVIG00000014759) #26	DUS3L (ENSNVIG00000014698) #27	PRR22 (ENSNVIG00000014685) #28	CATSPERD (ENSNVIG00000014650) #29	LONP1 (ENSNVIG00000014515) #30	RL36 (ENSNVIG00000014479) ##32	HSD11B1L (ENSNVIG00000014427) #31	MICOS13 (ENSNVIG00000014403) #33	SAFB (ENSNVIG00000014214) #34	SAFB2 (ENSNVIG00000014161) #35	PTPRS (ENSNVIG00000009241) #37
Ferret	MODERN SPECIES	326	CD70 (ENSMPUG00000006973) #8	TNFSF9 (ENSMPUG00000006964) #9	TUBB4A (ENSMPUG00000006958) #10	DENND1C (ENSMPUG00000006946) #11	CRB3 (ENSMPUG00000006930) #12	SLC25A23 (ENSMPUG00000006918) #13	SLC25A41 (ENSMPUG00000006890)	KHSRP (ENSMPUG00000006615) #14	ENSMPUG00000006584	GTF2F1 (ENSMPUG00000006566) #15	CLPP (ENSMPUG00000006553) #18	ACER1 (ENSMPUG00000006546) #19	MLLT1 (ENSMPUG00000006527) #20	ENSMPUG00000006513	ACSBG2 (ENSMPUG00000006350) #21	RFX2 (ENSMPUG00000006329) #22	RANBP3 (ENSMPUG00000006306) #23	ENSMPUG00000019705	CAPS (ENSMPUG00000006269)	VMAC (ENSMPUG00000006261) #24	NDUFA11 (ENSMPUG00000006200) #25	DUS3L (ENSMPUG00000006188) #27	CATSPERD (ENSMPUG00000006175) #29	ENSMPUG00000006166 #32	LONP1 (ENSMPUG00000006156) #30	HSD11B1L (ENSMPUG00000006146) #31	MICOS13 (ENSMPUG00000006136) #33	SAFB (ENSMPUG00000006123) #34	SAFB2 (ENSMPUG00000006106) #35	ZNRF4 (ENSMPUG00000019704)	ENSMPUG00000006102
Felidae	ANCESTRAL SPECIES	21	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.b #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.a #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Panthera	ANCESTRAL SPECIES	15	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.b #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.a #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01030000234949 #36
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a.b #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.a #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01030000234949 #36
leopard	MODERN SPECIES	134	ENSPPRG00000011364 #10	DENND1C (ENSPPRG00000011124) #11	CRB3 (ENSPPRG00000009994) #12	ENSPPRG00000008866 #12	SLC25A23 (ENSPPRG00000008786) #13	SLC25A41 (ENSPPRG00000008078)	KHSRP (ENSPPRG00000008001) #14	GTF2F1 (ENSPPRG00000007816) #15	PSPN (ENSPPRG00000007687) #16	ALKBH7 (ENSPPRG00000007447) #17	ENSPPRG00000007143	ACER1 (ENSPPRG00000007111) #19	MLLT1 (ENSPPRG00000006767) #20	ENSPPRG00000006490	ACSBG2 (ENSPPRG00000006197) #21	RFX2 (ENSPPRG00000004939) #22	RANBP3 (ENSPPRG00000004053) #23	CAPS (ENSPPRG00000002279)	VMAC (ENSPPRG00000001830) #24	NDUFA11 (ENSPPRG00000001722) #25	NRTN (ENSPPRG00000000950) #26	DUS3L (ENSPPRG00000000633) #27	PRR22 (ENSPPRG00000000087) #28	CATSPERD (ENSPPRG00000022721) #29	LONP1 (ENSPPRG00000023054) #30	ENSPPRG00000024592 #32	HSD11B1L (ENSPPRG00000024694) #31	ENSPPRG00000018391 #33	SAFB (ENSPPRG00000017197) #34	SAFB2 (ENSPPRG00000011310) #35	PTPRS (ENSPPRG00000011000) #37
lion	MODERN SPECIES	2	CD70 (ENSPLOG00000008810) #8	TUBB4A (ENSPLOG00000008766) #10	DENND1C (ENSPLOG00000008616) #11	CRB3 (ENSPLOG00000008561) #12	SLC25A23 (ENSPLOG00000008518) #13	SLC25A41 (ENSPLOG00000008462)	KHSRP (ENSPLOG00000008352) #14	GTF2F1 (ENSPLOG00000008314) #15	PSPN (ENSPLOG00000008290) #16	ALKBH7 (ENSPLOG00000008230) #17	CLPP (ENSPLOG00000008162) #18	ACER1 (ENSPLOG00000008130) #19	MLLT1 (ENSPLOG00000008040) #20	ENSPLOG00000007717	ACSBG2 (ENSPLOG00000007544) #21	RFX2 (ENSPLOG00000007424) #22	RANBP3 (ENSPLOG00000007325) #23	CAPS (ENSPLOG00000007257)	VMAC (ENSPLOG00000007244) #24	NDUFA11 (ENSPLOG00000007217) #25	NRTN (ENSPLOG00000007186) #26	DUS3L (ENSPLOG00000007145) #27	PRR22 (ENSPLOG00000007098) #28	ENSPLOG00000007082	ENSPLOG00000007018 ##32	HSD11B1L (ENSPLOG00000006970) #31	ENSPLOG00000006936 #33	SAFB (ENSPLOG00000006879) #34	SAFB2 (ENSPLOG00000006781) #35	TINCR (ENSPLOG00000006745) #36	ENSPLOG00000006724
Tiger	MODERN SPECIES	54	TRIP10 (ENSPTIG00000009104)	GPR108 (ENSPTIG00000012912)	ENSPTIG00000015516	ENSPTIG00000010121	TNFSF14 (ENSPTIG00000013537) #7	ENSPTIG00000014863	DENND1C (ENSPTIG00000015765) #11	SLC25A23 (ENSPTIG00000020081) #13	SLC25A41 (ENSPTIG00000020410)	GTF2F1 (ENSPTIG00000004277) #15	ENSPTIG00000006413 #17	ENSPTIG00000007112	ACER1 (ENSPTIG00000007573) #19	MLLT1 (ENSPTIG00000008740) #20	ACSBG2 (ENSPTIG00000010163) #21	RFX2 (ENSPTIG00000013487) #22	RANBP3 (ENSPTIG00000016728) #23	CAPS (ENSPTIG00000021210)	ENSPTIG00000021327 #24	ENSPTIG00000021644 #25	ENSPTIG00000021748	CATSPERD (ENSPTIG00000002842) #29	LONP1 (ENSPTIG00000007357) #30	ENSPTIG00000012120 ##32	ENSPTIG00000012707	MICOS13 (ENSPTIG00000012971) #33	SAFB2 (ENSPTIG00000015120) #35	ENSPTIG00000017107	KDM4B (ENSPTIG00000017400)	ENSPTIG00000019733	ARRDC5 (ENSPTIG00000001979)
Cat	MODERN SPECIES	1	CD70 (ENSFCAG00000028989) #8	TNFSF9 (ENSFCAG00000038600) #9	TUBB4A (ENSFCAG00000010269) #10	DENND1C (ENSFCAG00000012514) #11	CRB3 (ENSFCAG00000041058) #12	SLC25A41 (ENSFCAG00000025463)	KHSRP (ENSFCAG00000003731) #14	GTF2F1 (ENSFCAG00000012512) #15	PSPN (ENSFCAG00000043004) #16	ALKBH7 (ENSFCAG00000012510) #17	CLPP (ENSFCAG00000012509) #18	ACER1 (ENSFCAG00000040566) #19	MLLT1 (ENSFCAG00000023537) #20	ENSFCAG00000027464	ACSBG2 (ENSFCAG00000012505) #21	RFX2 (ENSFCAG00000012504) #22	RANBP3 (ENSFCAG00000012502) #23	ENSFCAG00000045490	NDUFA11 (ENSFCAG00000016347) #25	ENSFCAG00000025259	NRTN (ENSFCAG00000045492) #26	DUS3L (ENSFCAG00000027534) #27	CATSPERD (ENSFCAG00000015603) #29	RPL36 (ENSFCAG00000011838) #32	HSD11B1L (ENSFCAG00000011837) #31	ENSFCAG00000011836 #33	SAFB (ENSFCAG00000011835) #34	SAFB2 (ENSFCAG00000011834) #35	LONP1 (ENSFCAG00000011839) #30	TINCR (ENSFCAG00000043020) #36	ZNRF4 (ENSFCAG00000042643)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Equus	ANCESTRAL SPECIES	34	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Horse	MODERN SPECIES	28	DENND1C (ENSECAG00000010964) #11	CRB3 (ENSECAG00000010143) #12	SLC25A23 (ENSECAG00000020970) #13	SLC25A41 (ENSECAG00000018003)	KHSRP (ENSECAG00000018305) #14	ENSECAG00000016799	GTF2F1 (ENSECAG00000000246) #15	PSPN (ENSECAG00000001763) #16	ALKBH7 (ENSECAG00000023627) #17	CLPP (ENSECAG00000023054) #18	ACER1 (ENSECAG00000022733) #19	MLLT1 (ENSECAG00000015555) #20	ENSECAG00000029780	ENSECAG00000047643	ACSBG2 (ENSECAG00000017087) #21	RFX2 (ENSECAG00000020379) #22	RANBP3 (ENSECAG00000024789) #23	ENSECAG00000052631	ENSECAG00000059799 #25	ENSECAG00000033689	NRTN (ENSECAG00000039189) #26	ENSECAG00000019359 #28	CATSPERD (ENSECAG00000011401) #29	RPL36 (ENSECAG00000036419) #32	HSD11B1L (ENSECAG00000014443) #31	LONP1 (ENSECAG00000014761) #30	MICOS13 (ENSECAG00000012658) #33	SAFB (ENSECAG00000018659) #34	SAFB2 (ENSECAG00000018978) #35	ZNRF4 (ENSECAG00000034500)	PTPRS (ENSECAG00000032438) #37
Donkey	MODERN SPECIES	12	CD70 (ENSEASG00005000353) #8	TNFSF9 (ENSEASG00005028605) #9	TUBB4A (ENSEASG00005027092) #10	DENND1C (ENSEASG00005000214) #11	CRB3 (ENSEASG00005030191) #12	SLC25A23 (ENSEASG00005000075) #13	SLC25A41 (ENSEASG00005023116)	ENSEASG00005028550	GTF2F1 (ENSEASG00005023112) #15	PSPN (ENSEASG00005023110) #16	ALKBH7 (ENSEASG00005027385) #17	CLPP (ENSEASG00005023108) #18	ACER1 (ENSEASG00005023107) #19	MLLT1 (ENSEASG00005023105) #20	ACSBG2 (ENSEASG00005023104) #21	RFX2 (ENSEASG00005023101) #22	RANBP3 (ENSEASG00005023100) #23	ENSEASG00005036092	VMAC (ENSEASG00005035944) #24	ENSEASG00005029851 #25	ENSEASG00005023096	NRTN (ENSEASG00005023095) #26	DUS3L (ENSEASG00005023094) #27	PRR22 (ENSEASG00005028262) #28	CATSPERD (ENSEASG00005023093) #29	LONP1 (ENSEASG00005023062) #30	ENSEASG00005023046 ##32	HSD11B1L (ENSEASG00005023044) #31	MICOS13 (ENSEASG00005028016) #33	SAFB (ENSEASG00005023019) #34	ENSEASG00005022952 #35
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.w #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01030000234949 #36
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.w #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01030000234949 #36
Greater horseshoe bat	MODERN SPECIES	9	TNFSF9 (ENSRFEG00010014511) #9	TUBB4A (ENSRFEG00010014530) #10	DENND1C (ENSRFEG00010014718) #11	CRB3 (ENSRFEG00010014851) #12	SLC25A23 (ENSRFEG00010014934) #13	KHSRP (ENSRFEG00010015266) #14	ENSRFEG00010015355	GTF2F1 (ENSRFEG00010015531) #15	PSPN (ENSRFEG00010015585) #16	ALKBH7 (ENSRFEG00010015638) #17	CLPP (ENSRFEG00010015771) #18	ACER1 (ENSRFEG00010015824) #19	MLLT1 (ENSRFEG00010015888) #20	ENSRFEG00010015957 #21	ENSRFEG00010016123 #21	RFX2 (ENSRFEG00010016196) #22	RANBP3 (ENSRFEG00010016304) #23	CAPS (ENSRFEG00010016476)	VMAC (ENSRFEG00010016520) #24	NDUFA11 (ENSRFEG00010016557) #25	NRTN (ENSRFEG00010016659) #26	DUS3L (ENSRFEG00010016695) #27	CATSPERD (ENSRFEG00010016860) #29	LONP1 (ENSRFEG00010016908) #30	ENSRFEG00010017304 #32	HSD11B1L (ENSRFEG00010017351) #31	ENSRFEG00010017630 #33	SAFB (ENSRFEG00010017693) #34	SAFB2 (ENSRFEG00010017805) #35	TINCR (ENSRFEG00010017931) #36	ZNRF4 (ENSRFEG00010017958)
Microbat	MODERN SPECIES	1278	CD70 (ENSMLUG00000007323) #8	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161) #9	TUBB4A (ENSMLUG00000015607) #10	DENND1C (ENSMLUG00000015589) #11	CRB3 (ENSMLUG00000015582) #12	SLC25A41 (ENSMLUG00000015564)	SLC25A23 (ENSMLUG00000015572) #13	KHSRP (ENSMLUG00000015543) #14	GTF2F1 (ENSMLUG00000015530) #15	PSPN (ENSMLUG00000015527) #16	CLPP (ENSMLUG00000007981) #18	ENSMLUG00000014237 #19	MLLT1 (ENSMLUG00000014230) #20	ACSBG2 (ENSMLUG00000014216) #21	RFX2 (ENSMLUG00000017439) #22	ENSMLUG00000014888 #23	CAPS (ENSMLUG00000014884)	VMAC (ENSMLUG00000014883) #24	NDUFA11 (ENSMLUG00000027443) #25	NRTN (ENSMLUG00000007178) #26	DUS3L (ENSMLUG00000007159) #27	PRR22 (ENSMLUG00000023220) #28	CATSPERD (ENSMLUG00000001114) #29	LONP1 (ENSMLUG00000001100) #30	HSD11B1L (ENSMLUG00000024618) #31	MICOS13 (ENSMLUG00000028421) #33	SAFB (ENSMLUG00000001081) #34	SAFB2 (ENSMLUG00000001050) #35	PTPRS (ENSMLUG00000005087) #37
Megabat	MODERN SPECIES	3526																RFX2 (ENSPVAG00000003357) #22
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Suina	ANCESTRAL SPECIES	16	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Chacoan peccary	MODERN SPECIES	770	CD70 (ENSCWAG00000008679) #8	TNFSF9 (ENSCWAG00000008641) #9	TUBB4A (ENSCWAG00000008574) #10	DENND1C (ENSCWAG00000008209) #11	CRB3 (ENSCWAG00000008071) #12	SLC25A23 (ENSCWAG00000007971) #13	SLC25A41 (ENSCWAG00000007889)	KHSRP (ENSCWAG00000017455) #14	GTF2F1 (ENSCWAG00000017421) #15	PSPN (ENSCWAG00000017389) #16	ALKBH7 (ENSCWAG00000017346) #17	CLPP (ENSCWAG00000017303) #18	ACER1 (ENSCWAG00000017254) #19	MLLT1 (ENSCWAG00000017206) #20	ACSBG2 (ENSCWAG00000016992) #21	RFX2 (ENSCWAG00000016768) #22	RANBP3 (ENSCWAG00000016644) #23	CAPS (ENSCWAG00000016575)	VMAC (ENSCWAG00000016538) #24	NDUFA11 (ENSCWAG00000016483) #25	ENSCWAG00000016466	NRTN (ENSCWAG00000016434) #26	DUS3L (ENSCWAG00000016362) #27	PRR22 (ENSCWAG00000016306) #28	CATSPERD (ENSCWAG00000016184) #29	LONP1 (ENSCWAG00000015932) #30	RPL36 (ENSCWAG00000015898) #32	HSD11B1L (ENSCWAG00000015779) #31	MICOS13 (ENSCWAG00000015741) #33	SAFB (ENSCWAG00000015662) #34	SAFB2 (ENSCWAG00000015621) #35
Pig	MODERN SPECIES	10	CD70 (ENSSSCG00000031115) #8	TNFSF9 (ENSSSCG00000022370) #9	TUBB4A (ENSSSCG00000013545) #10	DENND1C (ENSSSCG00000013546) #11	CRB3 (ENSSSCG00000051897) #12	SLC25A23 (ENSSSCG00000013550) #13	SLC25A41 (ENSSSCG00000032785)	KHSRP (ENSSSCG00000013538) #14	GTF2F1 (ENSSSCG00000013539) #15	ALKBH7 (ENSSSCG00000024254) #17	PSPN (ENSSSCG00000013540) #16	CLPP (ENSSSCG00000038079) #18	ACER1 (ENSSSCG00000023969) #19	MLLT1 (ENSSSCG00000013534) #20	ACSBG2 (ENSSSCG00000013536) #21	RFX2 (ENSSSCG00000035403) #22	RANBP3 (ENSSSCG00000013533) #23	CAPS (ENSSSCG00000013532)	VMAC (ENSSSCG00000031764) #24	NDUFA11 (ENSSSCG00000027307) #25	ENSSSCG00000013530	NRTN (ENSSSCG00000033413) #26	DUS3L (ENSSSCG00000040968) #27	CATSPERD (ENSSSCG00000013527) #29	LONP1 (ENSSSCG00000027128) #30	RPL36 (ENSSSCG00000059007) #32	HSD11B1L (ENSSSCG00000030546) #31	MICOS13 (ENSSSCG00000013524) #33	SAFB (ENSSSCG00000013522) #34	SAFB2 (ENSSSCG00000013523) #35	TINCR (ENSSSCG00000042523) #36
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000006744 #8	ENSGT00390000006244 #9	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163389	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Narwhal	MODERN SPECIES	298	CD70 (ENSMMNG00015016394) #8	TNFSF9 (ENSMMNG00015016367) #9	TUBB4A (ENSMMNG00015016340) #10	DENND1C (ENSMMNG00015016214) #11	CRB3 (ENSMMNG00015016166) #12	SLC25A23 (ENSMMNG00015016105) #13	KHSRP (ENSMMNG00015015884) #14	ENSMMNG00015015791	GTF2F1 (ENSMMNG00015015754) #15	PSPN (ENSMMNG00015015733) #16	ALKBH7 (ENSMMNG00015015715) #17	CLPP (ENSMMNG00015015685) #18	ACER1 (ENSMMNG00015015665) #19	MLLT1 (ENSMMNG00015015635) #20	ACSBG2 (ENSMMNG00015004690) #21	RFX2 (ENSMMNG00015004665) #22	RANBP3 (ENSMMNG00015004623) #23	CAPS (ENSMMNG00015004589)	VMAC (ENSMMNG00015004582) #24	NDUFA11 (ENSMMNG00015004575) #25	ENSMMNG00015004569	NRTN (ENSMMNG00015004563) #26	DUS3L (ENSMMNG00015004546) #27	PRR22 (ENSMMNG00015004516) #28	CATSPERD (ENSMMNG00015004484) #29	LONP1 (ENSMMNG00015004413) #30	RPL36 (ENSMMNG00015004368) #32	HSD11B1L (ENSMMNG00015004344) #31	MICOS13 (ENSMMNG00015004313) #33	SAFB (ENSMMNG00015004266) #34	SAFB2 (ENSMMNG00015004188) #35
Beluga whale	MODERN SPECIES	62	ENSDLEG00000013807 #9	TUBB4A (ENSDLEG00000013810) #10	ENSDLEG00000013828 #11	ENSDLEG00000013892 #11	CRB3 (ENSDLEG00000013951) #12	SLC25A23 (ENSDLEG00000013960) #13	KHSRP (ENSDLEG00000013980) #14	ENSDLEG00000014038	GTF2F1 (ENSDLEG00000014057) #15	PSPN (ENSDLEG00000014081) #16	ALKBH7 (ENSDLEG00000014092) #17	CLPP (ENSDLEG00000014104) #18	ACER1 (ENSDLEG00000014123) #19	MLLT1 (ENSDLEG00000014165) #20	ACSBG2 (ENSDLEG00000014214) #21	RFX2 (ENSDLEG00000014418) #22	RANBP3 (ENSDLEG00000014487) #23	CAPS (ENSDLEG00000014540)	VMAC (ENSDLEG00000014555) #24	NDUFA11 (ENSDLEG00000014563) #25	NRTN (ENSDLEG00000014575) #26	DUS3L (ENSDLEG00000014609) #27	CATSPERD (ENSDLEG00000014692) #29	LONP1 (ENSDLEG00000014745) #30	RPL36 (ENSDLEG00000014798) #32	HSD11B1L (ENSDLEG00000014805) #31	MICOS13 (ENSDLEG00000014825) #33	SAFB (ENSDLEG00000014882) #34	SAFB2 (ENSDLEG00000015173) #35	TINCR (ENSDLEG00000015241) #36	ZNRF4 (ENSDLEG00000015253)
Vaquita	MODERN SPECIES	14	TNFSF14 (ENSPSNG00000006140) #7	ENSPSNG00000006109 #8	ENSPSNG00000006095 #9	TUBB4A (ENSPSNG00000005996) #10	DENND1C (ENSPSNG00000019480) #11	CRB3 (ENSPSNG00000019435) #12	SLC25A23 (ENSPSNG00000019375) #13	KHSRP (ENSPSNG00000019110) #14	ENSPSNG00000019013	GTF2F1 (ENSPSNG00000018932) #15	ALKBH7 (ENSPSNG00000018862) #17	CLPP (ENSPSNG00000018810) #18	ACER1 (ENSPSNG00000018752) #19	MLLT1 (ENSPSNG00000018623) #20	ACSBG2 (ENSPSNG00000018336) #21	RFX2 (ENSPSNG00000018253) #22	RANBP3 (ENSPSNG00000018114) #23	CAPS (ENSPSNG00000018005)	VMAC (ENSPSNG00000017974) #24	NDUFA11 (ENSPSNG00000017931) #25	NRTN (ENSPSNG00000017905) #26	DUS3L (ENSPSNG00000017805) #27	PRR22 (ENSPSNG00000017752) #28	CATSPERD (ENSPSNG00000017551) #29	LONP1 (ENSPSNG00000017242) #30	RPL36 (ENSPSNG00000017170) #32	HSD11B1L (ENSPSNG00000016974) #31	MICOS13 (ENSPSNG00000016941) #33	SAFB (ENSPSNG00000016828) #34	SAFB2 (ENSPSNG00000016753) #35	TINCR (ENSPSNG00000016698) #36
Dolphin	MODERN SPECIES	2032																RFX2 (ENSTTRG00000007531) #22	RANBP3 (ENSTTRG00000007530) #23	ENSTTRG00000007529	VMAC (ENSTTRG00000007528) #24	NDUFA11 (ENSTTRG00000007527) #25	ENSTTRG00000007526
Sperm whale	MODERN SPECIES	11	ENSPCTG00005011386	ADGRE1 (ENSPCTG00005011511)	VAV1 (ENSPCTG00005012531)	SH2D3A (ENSPCTG00005013915)	TRIP10 (ENSPCTG00005014182)	GPR108 (ENSPCTG00005014379)	C3 (ENSPCTG00005014524)	TNFSF14 (ENSPCTG00005015045) #7	CD70 (ENSPCTG00005015119) #8	TNFSF9 (ENSPCTG00005015187) #9	KHSRP (ENSPCTG00005015259) #14	CLPP (ENSPCTG00005015762) #18	ACER1 (ENSPCTG00005015854) #19	MLLT1 (ENSPCTG00005015937) #20	ACSBG2 (ENSPCTG00005015989) #21	RFX2 (ENSPCTG00005016359) #22	ENSPCTG00005008489 #23	ENSPCTG00005008584	ENSPCTG00005008881 #29	LONP1 (ENSPCTG00005009046) #30	RPL36 (ENSPCTG00005009451) #32	HSD11B1L (ENSPCTG00005009491) #31	MICOS13 (ENSPCTG00005009730) #33	ENSPCTG00005010047 #34	KDM4B (ENSPCTG00005014205)	PTPRS (ENSPCTG00005015250) #37	ZNRF4 (ENSPCTG00005015573)	FEM1A (ENSPCTG00005015656)	HDGFL2 (ENSPCTG00005015668)	ENSPCTG00005015705	FSD1 (ENSPCTG00005015759)
Blue whale	MODERN SPECIES	14	TNFSF9 (ENSBMSG00010002721) #9	TUBB4A (ENSBMSG00010002735) #10	DENND1C (ENSBMSG00010002755) #11	CRB3 (ENSBMSG00010002780) #12	SLC25A23 (ENSBMSG00010002792) #13	SLC25A41 (ENSBMSG00010002804)	KHSRP (ENSBMSG00010002829) #14	ENSBMSG00010002906	GTF2F1 (ENSBMSG00010002943) #15	PSPN (ENSBMSG00010002965) #16	ALKBH7 (ENSBMSG00010002973) #17	CLPP (ENSBMSG00010002982) #18	ACER1 (ENSBMSG00010002999) #19	MLLT1 (ENSBMSG00010003015) #20	ACSBG2 (ENSBMSG00010003047) #21	RFX2 (ENSBMSG00010003099) #22	RANBP3 (ENSBMSG00010003161) #23	CAPS (ENSBMSG00010003225)	VMAC (ENSBMSG00010003235) #24	NDUFA11 (ENSBMSG00010003243) #25	NRTN (ENSBMSG00010003262) #26	DUS3L (ENSBMSG00010003289) #27	CATSPERD (ENSBMSG00010003335) #29	LONP1 (ENSBMSG00010003368) #30	RPL36 (ENSBMSG00010003408) #32	HSD11B1L (ENSBMSG00010003419) #31	MICOS13 (ENSBMSG00010003442) #33	SAFB (ENSBMSG00010003461) #34	SAFB2 (ENSBMSG00010003501) #35	TINCR (ENSBMSG00010003509) #36	ZNRF4 (ENSBMSG00010003515)
Pecora	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Percora_a	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.n #34	ENSGT00940000155916.m.a #34
Bovidae	ANCESTRAL SPECIES		ENSGT00390000006244 #9	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.n #34	ENSGT00940000155916.m.a #34
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.n #34	ENSGT00940000155916.m.a #34
American bison	MODERN SPECIES	3349	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506) #10	ENSBBBG00000020590	DENND1C (ENSBBBG00000007187) #11	CRB3 (ENSBBBG00000020657) #12	SLC25A23 (ENSBBBG00000020672) #13	SLC25A41 (ENSBBBG00000020681)	KHSRP (ENSBBBG00000008202) #14	GTF2F1 (ENSBBBG00000020826) #15	ALKBH7 (ENSBBBG00000020847) #17	ENSBBBG00000008371 #16	CLPP (ENSBBBG00000020882) #18	ENSBBBG00000005623 #19	MLLT1 (ENSBBBG00000020959) #20	ACSBG2 (ENSBBBG00000021028) #21	RFX2 (ENSBBBG00000007387) #22	RANBP3 (ENSBBBG00000021259) #23	CAPS (ENSBBBG00000008402)	ENSBBBG00000021299 #24	NDUFA11 (ENSBBBG00000021309) #25	ENSBBBG00000021316	NRTN (ENSBBBG00000021324) #26	DUS3L (ENSBBBG00000021385) #27	CATSPERD (ENSBBBG00000005716) #29	LONP1 (ENSBBBG00000005732) #30	ENSBBBG00000021559 #32	HSD11B1L (ENSBBBG00000021637) #31	MICOS13 (ENSBBBG00000021662) #33	ENSBBBG00000021670 #34	ENSBBBG00000021680 #34	SAFB2 (ENSBBBG00000007636) #35
Bos	ANCESTRAL SPECIES	3	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b.h #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.n #34	ENSGT00940000155916.m.a #34
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.a.k ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.m.a #34	ENSGT00940000155916.m.b #34
Domestic yak	MODERN SPECIES	27	TUBB4A (ENSBGRG00000026030) #10	ENSBGRG00000000364	DENND1C (ENSBGRG00000000393) #11	CRB3 (ENSBGRG00000000409) #12	SLC25A23 (ENSBGRG00000000430) #13	SLC25A41 (ENSBGRG00000000480)	KHSRP (ENSBGRG00000000517) #14	GTF2F1 (ENSBGRG00000000661) #15	PSPN (ENSBGRG00000000694) #16	ALKBH7 (ENSBGRG00000000719) #17	CLPP (ENSBGRG00000000753) #18	ACER1 (ENSBGRG00000000765) #19	MLLT1 (ENSBGRG00000000789) #20	ENSBGRG00000000819	ACSBG2 (ENSBGRG00000000844) #21	RFX2 (ENSBGRG00000000923) #22	ENSBGRG00000000938	RANBP3 (ENSBGRG00000000978) #23	CAPS (ENSBGRG00000001193)	VMAC (ENSBGRG00000001217) #24	NDUFA11 (ENSBGRG00000001226) #25	ENSBGRG00000001243	ENSBGRG00000001255	NRTN (ENSBGRG00000001261) #26	DUS3L (ENSBGRG00000001278) #27	PRR22 (ENSBGRG00000001352) #28	CATSPERD (ENSBGRG00000001388) #29	LONP1 (ENSBGRG00000001424) #30	HSD11B1L (ENSBGRG00000001504) #31	MICOS13 (ENSBGRG00000001661) #33	ENSBGRG00000001800 #34
Wild yak	MODERN SPECIES	1314													MLLT1 (ENSBMUG00000026014) #20	ENSBMUG00000026012	ACSBG2 (ENSBMUG00000026010) #21	RFX2 (ENSBMUG00000026006) #22	RANBP3 (ENSBMUG00000026003) #23	CAPS (ENSBMUG00000025987)	VMAC (ENSBMUG00000025986) #24	NDUFA11 (ENSBMUG00000025985) #25	ENSBMUG00000025983	ENSBMUG00000025980 #26	DUS3L (ENSBMUG00000025978) #27	PRR22 (ENSBMUG00000025971) #28	CATSPERD (ENSBMUG00000025962) #29	ENSBMUG00000025956 ##32	LONP1 (ENSBMUG00000025950) #30	HSD11B1L (ENSBMUG00000025940) #31	MICOS13 (ENSBMUG00000025934) #33
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b.h #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916.n #34	ENSGT00940000161482 #35
Cow	MODERN SPECIES	26	TUBB4A (ENSBTAG00000021013) #10	ENSBTAG00000051810	DENND1C (ENSBTAG00000031809) #11	CRB3 (ENSBTAG00000051530) #12	SLC25A23 (ENSBTAG00000003491) #13	SLC25A41 (ENSBTAG00000020017)	KHSRP (ENSBTAG00000021018) #14	GTF2F1 (ENSBTAG00000021016) #15	PSPN (ENSBTAG00000031794) #16	ALKBH7 (ENSBTAG00000025540) #17	CLPP (ENSBTAG00000014712) #18	ACER1 (ENSBTAG00000008095) #19	MLLT1 (ENSBTAG00000002277) #20	ENSBTAG00000049278 #21	ACSBG2 (ENSBTAG00000009105) #21	RFX2 (ENSBTAG00000017661) #22	RANBP3 (ENSBTAG00000006070) #23	CAPS (ENSBTAG00000006069)	VMAC (ENSBTAG00000006067) #24	NDUFA11 (ENSBTAG00000019025) #25	FUT6 (ENSBTAG00000000414)	NRTN (ENSBTAG00000000413) #26	DUS3L (ENSBTAG00000011842) #27	PRR22 (ENSBTAG00000025550) #28	CATSPERD (ENSBTAG00000001796) #29	LONP1 (ENSBTAG00000001795) #30	RPL36 (ENSBTAG00000001794) #32	HSD11B1L (ENSBTAG00000001793) #31	MICOS13 (ENSBTAG00000001792) #33	SAFB (ENSBTAG00000007875) #34	ENSBTAG00000051794 #34
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091) #10	DENND1C (ENSBIXG00005011411) #11	CRB3 (ENSBIXG00005000466) #12	SLC25A23 (ENSBIXG00005011521) #13	SLC25A41 (ENSBIXG00005011565)	KHSRP (ENSBIXG00005011664) #14	GTF2F1 (ENSBIXG00005001151) #15	PSPN (ENSBIXG00005011696) #16	ALKBH7 (ENSBIXG00005011712) #17	CLPP (ENSBIXG00005011763) #18	ACER1 (ENSBIXG00005005477) #19	MLLT1 (ENSBIXG00005001179) #20	ACSBG2 (ENSBIXG00005001189) #21	ENSBIXG00005011901	RFX2 (ENSBIXG00005012097) #22	ENSBIXG00005000272	NDUFA11 (ENSBIXG00005012200) #25	ENSBIXG00005001267	NRTN (ENSBIXG00005012230) #26	DUS3L (ENSBIXG00005012323) #27	CATSPERD (ENSBIXG00005012388) #29	LONP1 (ENSBIXG00005001346) #30	ENSBIXG00005012522 #32	HSD11B1L (ENSBIXG00005012597) #31	MICOS13 (ENSBIXG00005006332) #33	SAFB (ENSBIXG00005012788) #34	SAFB2 (ENSBIXG00005012877) #35	TINCR (ENSBIXG00005012905) #36	ENSBIXG00005012918	PTPRS (ENSBIXG00005001496) #37
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000006244 #9	ENSGT00940000164486	ENSGT00940000161972 #10	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.b #32	ENSGT00940000162487 #31	ENSGT00390000002629.c #33	ENSGT00940000155916.n #34	ENSGT00940000161482 #35	ENSGT00940000163061	ENSGT00940000153617.A.b #37
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020019106	TUBB4A (ENSOARG00020019161) #10	DENND1C (ENSOARG00020019197) #11	CRB3 (ENSOARG00020019269) #12	SLC25A23 (ENSOARG00020019333) #13	SLC25A41 (ENSOARG00020019425)	KHSRP (ENSOARG00020019494) #14	GTF2F1 (ENSOARG00020019647) #15	PSPN (ENSOARG00020019711) #16	ALKBH7 (ENSOARG00020019744) #17	CLPP (ENSOARG00020019811) #18	ACER1 (ENSOARG00020019869) #19	MLLT1 (ENSOARG00020019921) #20	ENSOARG00020020028	ACSBG2 (ENSOARG00020020054) #21	RFX2 (ENSOARG00020020257) #22	RANBP3 (ENSOARG00020020564) #23	CAPS (ENSOARG00020020769)	VMAC (ENSOARG00020020817) #24	NDUFA11 (ENSOARG00020020850) #25	ENSOARG00020020891	NRTN (ENSOARG00020020907) #26	DUS3L (ENSOARG00020020943) #27	PRR22 (ENSOARG00020021041) #28	CATSPERD (ENSOARG00020021093) #29	LONP1 (ENSOARG00020021281) #30	RPL36 (ENSOARG00020008622) #32	HSD11B1L (ENSOARG00020008652) #31	MICOS13 (ENSOARG00020008768) #33	ENSOARG00020008821 #34	ENSOARG00020009005 #34
Goat	MODERN SPECIES	26	ENSCHIG00000004302 #9	TUBB4A (ENSCHIG00000020195) #10	DENND1C (ENSCHIG00000017569) #11	CRB3 (ENSCHIG00000023021) #12	SLC25A23 (ENSCHIG00000008013) #13	SLC25A41 (ENSCHIG00000017363)	KHSRP (ENSCHIG00000027053) #14	ENSCHIG00000011986 #15	PSPN (ENSCHIG00000018638) #16	ALKBH7 (ENSCHIG00000024761) #17	CLPP (ENSCHIG00000023189) #18	ACER1 (ENSCHIG00000008361) #19	ENSCHIG00000016868	MLLT1 (ENSCHIG00000022842) #20	ACSBG2 (ENSCHIG00000016276) #21	RFX2 (ENSCHIG00000023052) #22	RANBP3 (ENSCHIG00000021064) #23	CAPS (ENSCHIG00000022459)	VMAC (ENSCHIG00000004574) #24	NDUFA11 (ENSCHIG00000021213) #25	PRR22 (ENSCHIG00000022206) #28	DUS3L (ENSCHIG00000021327) #27	LONP1 (ENSCHIG00000003365) #30	RPL36 (ENSCHIG00000014701) #32	HSD11B1L (ENSCHIG00000023498) #31	ENSCHIG00000025054 #33	SAFB (ENSCHIG00000007262) #34	SAFB2 (ENSCHIG00000024547) #35	ZNRF4 (ENSCHIG00000009323)	PTPRS (ENSCHIG00000027091) #37	KDM4B (ENSCHIG00000017369)
Siberian musk deer	MODERN SPECIES	99	TNFSF9 (ENSMMSG00000007760) #9	ENSMMSG00000007773	TUBB4A (ENSMMSG00000007812) #10	DENND1C (ENSMMSG00000007861) #11	ENSMMSG00000008095 #12	SLC25A23 (ENSMMSG00000008146) #13	SLC25A41 (ENSMMSG00000008181)	KHSRP (ENSMMSG00000008232) #14	GTF2F1 (ENSMMSG00000008317) #15	PSPN (ENSMMSG00000008350) #16	ALKBH7 (ENSMMSG00000008382) #17	CLPP (ENSMMSG00000008431) #18	ACER1 (ENSMMSG00000008449) #19	MLLT1 (ENSMMSG00000008480) #20	ACSBG2 (ENSMMSG00000008549) #21	RFX2 (ENSMMSG00000008753) #22	ENSMMSG00000008883	RANBP3 (ENSMMSG00000008928) #23	CAPS (ENSMMSG00000009082)	VMAC (ENSMMSG00000009134) #24	NDUFA11 (ENSMMSG00000009156) #25	NRTN (ENSMMSG00000009181) #26	ENSMMSG00000009212	DUS3L (ENSMMSG00000009249) #27	PRR22 (ENSMMSG00000009493) #28	CATSPERD (ENSMMSG00000009524) #29	LONP1 (ENSMMSG00000009638) #30	ENSMMSG00000009807 ##32	HSD11B1L (ENSMMSG00000009847) #31	MICOS13 (ENSMMSG00000009950) #33	ENSMMSG00000010451 #34
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000016453 #9	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548) #10	DENND1C (ENSCHYG00000016610) #11	CRB3 (ENSCHYG00000016801) #12	SLC25A23 (ENSCHYG00000016841) #13	KHSRP (ENSCHYG00000017189) #14	ENSCHYG00000019841 #15	PSPN (ENSCHYG00000019928) #16	ALKBH7 (ENSCHYG00000019961) #17	CLPP (ENSCHYG00000020020) #18	ACER1 (ENSCHYG00000020198) #19	MLLT1 (ENSCHYG00000020253) #20	ACSBG2 (ENSCHYG00000020499) #21	ENSCHYG00000020848 #15	RFX2 (ENSCHYG00000020941) #22	RANBP3 (ENSCHYG00000021150) #23	CAPS (ENSCHYG00000021783)	VMAC (ENSCHYG00000021843) #24	NDUFA11 (ENSCHYG00000021871) #25	ENSCHYG00000021955	NRTN (ENSCHYG00000021980) #26	DUS3L (ENSCHYG00000000481) #27	PRR22 (ENSCHYG00000000509) #28	LONP1 (ENSCHYG00000000595) #30	HSD11B1L (ENSCHYG00000000636) #31	MICOS13 (ENSCHYG00000000687) #33	ENSCHYG00000000705 #35	SAFB2 (ENSCHYG00000000733) #35	TINCR (ENSCHYG00000000759) #36	ZNRF4 (ENSCHYG00000000771)
Camelidae	ANCESTRAL SPECIES	36									ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a.a.b.a.a #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Arabian camel	MODERN SPECIES	14	CD70 (ENSCDRG00005021939) #8	TUBB4A (ENSCDRG00005021940) #10	DENND1C (ENSCDRG00005021941) #11	CRB3 (ENSCDRG00005021942) #12	SLC25A23 (ENSCDRG00005021943) #13	SLC25A41 (ENSCDRG00005021944)	KHSRP (ENSCDRG00005021945) #14	ENSCDRG00005021946	GTF2F1 (ENSCDRG00005021947) #15	PSPN (ENSCDRG00005021948) #16	ALKBH7 (ENSCDRG00005021949) #17	CLPP (ENSCDRG00005021950) #18	ACER1 (ENSCDRG00005021951) #19	MLLT1 (ENSCDRG00005021952) #20	ACSBG2 (ENSCDRG00005021953) #21	RFX2 (ENSCDRG00005021955) #22	RANBP3 (ENSCDRG00005021957) #23	CAPS (ENSCDRG00005021958)	VMAC (ENSCDRG00005021959) #24	NDUFA11 (ENSCDRG00005021961) #25	ENSCDRG00005021962	NRTN (ENSCDRG00005021964) #26	DUS3L (ENSCDRG00005021966) #27	PRR22 (ENSCDRG00005021969) #28	CATSPERD (ENSCDRG00005021971) #29	LONP1 (ENSCDRG00005021975) #30	ENSCDRG00005021978 #32	HSD11B1L (ENSCDRG00005021979) #31	MICOS13 (ENSCDRG00005021982) #33	SAFB (ENSCDRG00005021986) #34	SAFB2 (ENSCDRG00005021993) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.a #22
Common shrew	MODERN SPECIES	7216																ENSSARG00000013605 #22
Atlantogenata	ANCESTRAL SPECIES	144																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.b ##32	ENSGT00390000011943.a.a #32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34
Afrotheria	ANCESTRAL SPECIES	176																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.b ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Tenrec	MODERN SPECIES	30																ENSETEG00000006652 #22
Afrotheria_a	ANCESTRAL SPECIES	181																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.b ##32	ENSGT00940000162487 #31	ENSGT00390000002629 #33	ENSGT00940000155916 #34	ENSGT00940000161482 #35
Elephant	DUPLICATION
Elephant	MODERN SPECIES	46	TNFSF14 (ENSLAFG00000021999) #7	ACSBG2 (ENSLAFG00000006705) #21	MLLT1 (ENSLAFG00000026589) #20	ACER1 (ENSLAFG00000012500) #19	CLPP (ENSLAFG00000027937) #18	ALKBH7 (ENSLAFG00000003852) #17	ENSLAFG00000003851 #16	ENSLAFG00000030192 #15	ENSLAFG00000020872	KHSRP (ENSLAFG00000002426) #14	SLC25A41 (ENSLAFG00000028633)	SLC25A23 (ENSLAFG00000013828) #13	CRB3 (ENSLAFG00000013740) #12	TNFSF9 (ENSLAFG00000028534) #9	CD70 (ENSLAFG00000008781) #8	ENSLAFG00000027235 #22	ENSLAFG00000013350 #22	RANBP3 (ENSLAFG00000001841) #23	CAPS (ENSLAFG00000028433)	VMAC (ENSLAFG00000005431) #24	NDUFA11 (ENSLAFG00000028920) #25	ENSLAFG00000013441	ENSLAFG00000010081	ENSLAFG00000023311	NRTN (ENSLAFG00000000500) #26	DUS3L (ENSLAFG00000027552) #27	CATSPERD (ENSLAFG00000030723) #29	LONP1 (ENSLAFG00000031651) #30	MICOS13 (ENSLAFG00000026050) #33	SAFB (ENSLAFG00000003840) #34	SAFB2 (ENSLAFG00000003836) #35
Elephant	MODERN SPECIES	46	ACSBG2 (ENSLAFG00000006705) #21	MLLT1 (ENSLAFG00000026589) #20	ACER1 (ENSLAFG00000012500) #19	CLPP (ENSLAFG00000027937) #18	ALKBH7 (ENSLAFG00000003852) #17	ENSLAFG00000003851 #16	ENSLAFG00000030192 #15	ENSLAFG00000020872	KHSRP (ENSLAFG00000002426) #14	SLC25A41 (ENSLAFG00000028633)	SLC25A23 (ENSLAFG00000013828) #13	CRB3 (ENSLAFG00000013740) #12	TNFSF9 (ENSLAFG00000028534) #9	CD70 (ENSLAFG00000008781) #8	ENSLAFG00000027235 #22	ENSLAFG00000013350 #22	RANBP3 (ENSLAFG00000001841) #23	CAPS (ENSLAFG00000028433)	VMAC (ENSLAFG00000005431) #24	NDUFA11 (ENSLAFG00000028920) #25	ENSLAFG00000013441	ENSLAFG00000010081	ENSLAFG00000023311	NRTN (ENSLAFG00000000500) #26	DUS3L (ENSLAFG00000027552) #27	CATSPERD (ENSLAFG00000030723) #29	LONP1 (ENSLAFG00000031651) #30	MICOS13 (ENSLAFG00000026050) #33	SAFB (ENSLAFG00000003840) #34	SAFB2 (ENSLAFG00000003836) #35	ENSLAFG00000001854 #15
Hyrax	MODERN SPECIES	6555																RFX2 (ENSPCAG00000005516) #22	RANBP3 (ENSPCAG00000005366) #23	CAPS (ENSPCAG00000005222)	VMAC (ENSPCAG00000005191) #24
Xenarthra	ANCESTRAL SPECIES	529																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28
Sloth	MODERN SPECIES	9																ENSCHOG00000006667 #22
Armadillo	MODERN SPECIES	710														ENSDNOG00000049525	ENSDNOG00000039422	RFX2 (ENSDNOG00000033124) #22	ENSDNOG00000049084	RANBP3 (ENSDNOG00000008849) #23	CAPS (ENSDNOG00000008840)	VMAC (ENSDNOG00000008836) #24	NDUFA11 (ENSDNOG00000035011) #25	ENSDNOG00000044039	NRTN (ENSDNOG00000048073) #26	DUS3L (ENSDNOG00000048551) #27	PRR22 (ENSDNOG00000038830) #28	ENSDNOG00000031322
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00940000163693	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a #30	ENSGT00390000011943.a.a #32	ENSGT00390000002629 #33	ENSGT00940000165061	ENSGT00940000155916 #34	ENSGT00940000161482 #35	ENSGT01010000222912
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a.g #30	ENSGT00390000011943.b ##32	ENSGT00390000011943.a.a #32	ENSGT00390000002629 #33	ENSGT00940000165061
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032 #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a.g #30	ENSGT00390000011943.a.a #32	ENSGT00390000002629 #33	ENSGT00940000165061	ENSGT00940000155916 #34
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #11	ENSGT00950000183101.a.b.a #12	ENSGT00940000159428 #13	ENSGT00940000162419	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032.hb #15	ENSGT00950000182993.B.b #16	ENSGT00390000014585 #17	ENSGT00390000005830 #18	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.q #23	ENSGT00940000162442	ENSGT00390000007212 #24	ENSGT00390000012434.h #25	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00390000016128 #28	ENSGT00940000166580	ENSGT00940000162714 #29	ENSGT00530000063553.b.a.g #30	ENSGT00390000011943.a.a #32	ENSGT00390000002629 #33	ENSGT00940000165061	ENSGT00940000155916 #34
koala	MODERN SPECIES	214	ENSPCIG00000016640 #9	ENSPCIG00000016632	CRB3 (ENSPCIG00000033282) #12	SLC25A23 (ENSPCIG00000016625) #13	SLC25A41 (ENSPCIG00000016624)	KHSRP (ENSPCIG00000025516) #14	ENSPCIG00000004565 #15	ENSPCIG00000003850	ENSPCIG00000034364 #15	ALKBH7 (ENSPCIG00000016623) #17	CLPP (ENSPCIG00000016621) #18	ACER1 (ENSPCIG00000016619) #19	MLLT1 (ENSPCIG00000032521) #20	ENSPCIG00000019691 #21	ENSPCIG00000013268 #21	RFX2 (ENSPCIG00000008454) #22	ENSPCIG00000008455 #23	CAPS (ENSPCIG00000008456)	VMAC (ENSPCIG00000008457) #24	ENSPCIG00000031677 #25	ENSPCIG00000008459	ENSPCIG00000008470 #26	DUS3L (ENSPCIG00000008483) #27	ENSPCIG00000009483 #28	ENSPCIG00000009484	ENSPCIG00000009485 #29	LONP1 (ENSPCIG00000009491) #30	RPL36 (ENSPCIG00000009495) #32	ENSPCIG00000009497 #33	ENSPCIG00000009499	SAFB (ENSPCIG00000009504) #34
Common wonbat	MODERN SPECIES	580	ENSVURG00010024360	DENND1C (ENSVURG00010024363) #11	SLC25A23 (ENSVURG00010024368) #13	SLC25A41 (ENSVURG00010024376)	ENSVURG00010024380 #15	ENSVURG00010024383	ENSVURG00010024387 #15	ENSVURG00010024392 #16	ALKBH7 (ENSVURG00010024395) #17	CLPP (ENSVURG00010024400) #18	ACER1 (ENSVURG00010024402) #19	MLLT1 (ENSVURG00010024407) #20	ENSVURG00010024418 #21	ENSVURG00010024432 #21	ENSVURG00010024437	RFX2 (ENSVURG00010024439) #22	RANBP3 (ENSVURG00010024451) #23	CAPS (ENSVURG00010024467)	VMAC (ENSVURG00010024470) #24	ENSVURG00010024473 #25	ENSVURG00010024474	NRTN (ENSVURG00010024477) #26	DUS3L (ENSVURG00010024481) #27	ENSVURG00010024487 #28	LONP1 (ENSVURG00010024506) #30	RPL36 (ENSVURG00010024521) ##32	ENSVURG00010024523 #33	ENSVURG00010024525	SAFB (ENSVURG00010024530) #34	SAFB2 (ENSVURG00010024546) #35	ENSVURG00010024552
Wallaby	MODERN SPECIES	554																RFX2 (ENSMEUG00000009870) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000020579	DENND1C (ENSSHAG00000011768) #11	ENSSHAG00000023441 #12	SLC25A23 (ENSSHAG00000011678) #13	SLC25A41 (ENSSHAG00000011643)	KHSRP (ENSSHAG00000011383) #14	ENSSHAG00000022420 #15	ENSSHAG00000030352	ENSSHAG00000010846 #15	ENSSHAG00000029162 #16	ALKBH7 (ENSSHAG00000026703) #17	CLPP (ENSSHAG00000010777) #18	MLLT1 (ENSSHAG00000009440) #20	ENSSHAG00000008859 #21	ENSSHAG00000008517 #21	RFX2 (ENSSHAG00000005810) #22	RANBP3 (ENSSHAG00000027846) #23	CAPS (ENSSHAG00000021620)	ENSSHAG00000021266	NRTN (ENSSHAG00000028408) #26	DUS3L (ENSSHAG00000014156) #27	ENSSHAG00000022434 #28	ENSSHAG00000013790 #29	ENSSHAG00000013497 #30	RPL36 (ENSSHAG00000013492) ##32	ENSSHAG00000013187	ENSSHAG00000012954 #34	SAFB2 (ENSSHAG00000012703) #35	ENSSHAG00000028648	PTPRS (ENSSHAG00000008059) #37	KDM4B (ENSSHAG00000027527)
Opossum	MODERN SPECIES	2	ENSMODG00000001954 #8	ENSMODG00000002060 #9	ENSMODG00000002055	ENSMODG00000024011	DENND1C (ENSMODG00000002048) #11	ENSMODG00000002023 #13	SLC25A41 (ENSMODG00000001959)	KHSRP (ENSMODG00000001952) #14	ENSMODG00000051201 #15	ENSMODG00000001941	ENSMODG00000037547 #15	ACER1 (ENSMODG00000001913) #19	MLLT1 (ENSMODG00000001886) #20	ENSMODG00000049985 #21	ENSMODG00000001431 #21	RFX2 (ENSMODG00000001398) #22	RANBP3 (ENSMODG00000001371) #23	ENSMODG00000001357	VMAC (ENSMODG00000049884) #24	ENSMODG00000001343 #25	DUS3L (ENSMODG00000001339) #27	ENSMODG00000042676 #28	ENSMODG00000001314	ENSMODG00000025644 #29	LONP1 (ENSMODG00000001308) #30	RPL36 (ENSMODG00000001275) #32	ENSMODG00000001268 #33	ENSMODG00000001263	SAFB (ENSMODG00000001236) #34	SAFB2 (ENSMODG00000001178) #35	ENSMODG00000001148
Platypus	MODERN SPECIES	84	ENSOANG00000020436	ENSOANG00000043970	ENSOANG00000038414	ENSOANG00000046625	ENSOANG00000036852	ENSOANG00000044718	ENSOANG00000051044	ENSOANG00000048744	ADAMTS10 (ENSOANG00000048563)	MYO1F (ENSOANG00000031364)	ENSOANG00000013254	ENSOANG00000013256	ACER1 (ENSOANG00000001816) #19	MLLT1 (ENSOANG00000041566) #20	ACSBG2 (ENSOANG00000006236) #21	RFX2 (ENSOANG00000003796) #22	RANBP3 (ENSOANG00000004948) #23	ENSOANG00000004951	NDUFA11 (ENSOANG00000004952) #25	ENSOANG00000004953	IPPK (ENSOANG00000040735)	ECM2 (ENSOANG00000006388)	ASPN (ENSOANG00000007011)	OMD (ENSOANG00000000114)	OGN (ENSOANG00000000113)	ENSOANG00000046190	ENSOANG00000015102	IARS1 (ENSOANG00000000112)	ENSOANG00000015176	SLC6A11 (ENSOANG00000039168)	SLC6A1 (ENSOANG00000015178)
Sauria	ANCESTRAL SPECIES	20	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Archosauria	ANCESTRAL SPECIES	16	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Aves	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Neognathae	ANCESTRAL SPECIES	21	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00390000006337	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Passeriformes	ANCESTRAL SPECIES	27	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399
Great tit	MODERN SPECIES	21	ENSPMJG00000010606	OAZ1 (ENSPMJG00000010608)	ENSPMJG00000010609	LINGO3 (ENSPMJG00000010611)	ENSPMJG00000010612	ENSPMJG00000010633	ENSPMJG00000010637	NFILZ (ENSPMJG00000010639)	ZAP70 (ENSPMJG00000010641)	ADAMTS10 (ENSPMJG00000010642)	MYO1F (ENSPMJG00000010643)	ENSPMJG00000010647	ACER1 (ENSPMJG00000010649) #19	MLLT1 (ENSPMJG00000010651) #20	ACSBG2 (ENSPMJG00000010652) #21	RFX2 (ENSPMJG00000010657) #22	IFI30 (ENSPMJG00000010828)	PIK3R2 (ENSPMJG00000010829)	MAST3 (ENSPMJG00000010830)	ENSPMJG00000010833	ARRDC2 (ENSPMJG00000010834)	PEX11G (ENSPMJG00000010835)	ENSPMJG00000010836	ARHGEF18 (ENSPMJG00000010837)	ENSPMJG00000010842	INSR (ENSPMJG00000010844)	USE1 (ENSPMJG00000010845)	MYO9B (ENSPMJG00000010846)	HAUS8 (ENSPMJG00000010850)	CPAMD8 (ENSPMJG00000010852)	F2RL3 (ENSPMJG00000010859)
Passeriformes_d	ANCESTRAL SPECIES	28	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399
Flycatcher	MODERN SPECIES	20	AMH (ENSFALG00000028741)	OAZ1 (ENSFALG00000013794)	LINGO3 (ENSFALG00000014305)	ENSFALG00000025050	ENSFALG00000025175	NFILZ (ENSFALG00000027243)	ENSFALG00000013807	ENSFALG00000014311	ADAMTS10 (ENSFALG00000013813)	MYO1F (ENSFALG00000013814)	ENSFALG00000028457	ZNF414 (ENSFALG00000028613)	ACER1 (ENSFALG00000024447) #19	MLLT1 (ENSFALG00000013823) #20	ACSBG2 (ENSFALG00000013826) #21	RFX2 (ENSFALG00000013832) #22	ENSFALG00000026674	ENSFALG00000013834	IFI30 (ENSFALG00000013837)	PIK3R2 (ENSFALG00000013839)	MAST3 (ENSFALG00000013842)	ARRDC2 (ENSFALG00000013849)	ENSFALG00000023440	ENSFALG00000013850	ENSFALG00000013852	ENSFALG00000026675	ENSFALG00000013853	USE1 (ENSFALG00000026213)	MYO9B (ENSFALG00000013855)	HAUS8 (ENSFALG00000013857)	CPAMD8 (ENSFALG00000013860)
Passeriformes_g	ANCESTRAL SPECIES	29	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399	ENSGT01050000244840.A.b.a
Passeroidea	ANCESTRAL SPECIES	29	ENSGT00390000005235	ENSGT00720000108823.b	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399	ENSGT01050000244840.A.b.a
Common canary	MODERN SPECIES	44	AP3D1 (ENSSCAG00000002302)	DOT1L (ENSSCAG00000002326)	PLEKHJ1 (ENSSCAG00000002343)	SF3A2 (ENSSCAG00000002348)	OAZ1 (ENSSCAG00000002364)	ENSSCAG00000002394	ZAP70 (ENSSCAG00000002398)	ADAMTS10 (ENSSCAG00000002453)	ENSSCAG00000002641	MYO1F (ENSSCAG00000002644)	ZNF414 (ENSSCAG00000002652)	ENSSCAG00000002662	ACER1 (ENSSCAG00000002667) #19	MLLT1 (ENSSCAG00000002671) #20	ACSBG2 (ENSSCAG00000002681) #21	RFX2 (ENSSCAG00000002695) #22	ENSSCAG00000002698	IFI30 (ENSSCAG00000002724)	PIK3R2 (ENSSCAG00000002784)	MAST3 (ENSSCAG00000002920)	ARRDC2 (ENSSCAG00000003515)	PEX11G (ENSSCAG00000003522)	ENSSCAG00000003532	ARHGEF18 (ENSSCAG00000003534)	ENSSCAG00000003545	INSR (ENSSCAG00000003553)	USE1 (ENSSCAG00000003564)	MYO9B (ENSSCAG00000003623)	HAUS8 (ENSSCAG00000003910)	CPAMD8 (ENSSCAG00000003920)	F2RL3 (ENSSCAG00000003938)
Zebra finch	MODERN SPECIES	21	PLEKHJ1 (ENSTGUG00000021961)	SF3A2 (ENSTGUG00000000305)	LINGO3 (ENSTGUG00000000323)	ENSTGUG00000000325	ENSTGUG00000000327	OAZ1 (ENSTGUG00000000312)	ENSTGUG00000022848	ZAP70 (ENSTGUG00000000330)	ADAMTS10 (ENSTGUG00000000334)	MYO1F (ENSTGUG00000000346)	ZNF414 (ENSTGUG00000000351)	ENSTGUG00000000352	ACER1 (ENSTGUG00000025023) #19	MLLT1 (ENSTGUG00000000360) #20	ACSBG2 (ENSTGUG00000000363) #21	RFX2 (ENSTGUG00000000369) #22	IFI30 (ENSTGUG00000000388)	PIK3R2 (ENSTGUG00000000392)	MAST3 (ENSTGUG00000000403)	ENSTGUG00000026934	ARRDC2 (ENSTGUG00000000411)	PEX11G (ENSTGUG00000026140)	ENSTGUG00000000415	ARHGEF18 (ENSTGUG00000000416)	INSR (ENSTGUG00000000426)	USE1 (ENSTGUG00000000443)	MYO9B (ENSTGUG00000000453)	HAUS8 (ENSTGUG00000000469)	CPAMD8 (ENSTGUG00000000470)	F2RL3 (ENSTGUG00000000473)	SIN3B (ENSTGUG00000000474)
Medium ground finch	MODERN SPECIES	251						ENSGFOG00000013995	ENSGFOG00000013997	ZAP70 (ENSGFOG00000013999)	ADAMTS10 (ENSGFOG00000014001)	MYO1F (ENSGFOG00000014025)	ENSGFOG00000014208	ENSGFOG00000014210	ACER1 (ENSGFOG00000014212) #19	MLLT1 (ENSGFOG00000014213) #20	ACSBG2 (ENSGFOG00000014217) #21	RFX2 (ENSGFOG00000014241) #22	IFI30 (ENSGFOG00000014333)	PIK3R2 (ENSGFOG00000014336)	MAST3 (ENSGFOG00000014346)	ARRDC2 (ENSGFOG00000014384)	ARHGEF18 (ENSGFOG00000014387)	INSR (ENSGFOG00000014399)	USE1 (ENSGFOG00000014409)	MYO9B (ENSGFOG00000014411)	HAUS8 (ENSGFOG00000014434)
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Kakapo	MODERN SPECIES	13	PLEKHJ1 (ENSSHBG00005014296)	SF3A2 (ENSSHBG00005014304)	AMH (ENSSHBG00005014313)	ENSSHBG00005014321	OAZ1 (ENSSHBG00005014344)	LINGO3 (ENSSHBG00005014360)	NFILZ (ENSSHBG00005014373)	ZAP70 (ENSSHBG00005014385)	ADAMTS10 (ENSSHBG00005014419)	MYO1F (ENSSHBG00005014552)	ZNF414 (ENSSHBG00005016095)	ENSSHBG00005016097	ACER1 (ENSSHBG00005016101) #19	MLLT1 (ENSSHBG00005016105) #20	ACSBG2 (ENSSHBG00005016127) #21	RFX2 (ENSSHBG00005016885) #22	ENSSHBG00005016968	FBN3 (ENSSHBG00005017003)	EBI3 (ENSSHBG00005017066)	ANKRD24 (ENSSHBG00005017072)	SIRT6 (ENSSHBG00005017080)	CREB3L3 (ENSSHBG00005017085)	MAP2K2 (ENSSHBG00005017092)	ZBTB7A (ENSSHBG00005017095)	ENSSHBG00005017098	PIAS4 (ENSSHBG00005017101)	EEF2 (ENSSHBG00005017109)	ENSSHBG00005017116	ENSSHBG00005017120	ATCAY (ENSSHBG00005017123)	ENSSHBG00005017126
Golden eagle	MODERN SPECIES	3	PLEKHJ1 (ENSACCG00020016167)	SF3A2 (ENSACCG00020016156)	AMH (ENSACCG00020016136)	ENSACCG00020016128	OAZ1 (ENSACCG00020016110)	LINGO3 (ENSACCG00020016098)	NFILZ (ENSACCG00020016091)	ZAP70 (ENSACCG00020016078)	ADAMTS10 (ENSACCG00020016059)	MYO1F (ENSACCG00020016023)	ZNF414 (ENSACCG00020016006)	ENSACCG00020015996	ACER1 (ENSACCG00020015987) #19	MLLT1 (ENSACCG00020015972) #20	ACSBG2 (ENSACCG00020015951) #21	RFX2 (ENSACCG00020015906) #22	ENSACCG00020015877	DUS3L (ENSACCG00020015859) #27	NRTN (ENSACCG00020015844) #26	ENSACCG00020015834	ATCAY (ENSACCG00020015815)	NMRK2 (ENSACCG00020015806)	DAPK3 (ENSACCG00020015793)	EEF2 (ENSACCG00020015772)	PIAS4 (ENSACCG00020015756)	ZBTB7A (ENSACCG00020015748)	MAP2K2 (ENSACCG00020015740)	CREB3L3 (ENSACCG00020015724)	SIRT6 (ENSACCG00020015712)	ANKRD24 (ENSACCG00020015679)	EBI3 (ENSACCG00020015642)
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237
Anatidae	ANCESTRAL SPECIES	65	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404.n	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a.b #19	ENSGT00730000110920.b.a.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364
Pink-footed goose	MODERN SPECIES	329				ENSABRG00000013686	ACTL9 (ENSABRG00000013679)	NFILZ (ENSABRG00000013672)	ZAP70 (ENSABRG00000013663)	ADAMTS10 (ENSABRG00000013415)	MYO1F (ENSABRG00000013388)	ZNF414 (ENSABRG00000013383)	ENSABRG00000013368	ENSABRG00000013361 #19	ENSABRG00000013350 #19	MLLT1 (ENSABRG00000013334) #20	ACSBG2 (ENSABRG00000013324) #21	RFX2 (ENSABRG00000013316) #22	ENSABRG00000013314	ENSABRG00000013304	DUS3L (ENSABRG00000013292) #27	NRTN (ENSABRG00000013286) #26	ENSABRG00000013284	ATCAY (ENSABRG00000013264)	ENSABRG00000013254
Duck	MODERN SPECIES	20	SF3A2 (ENSAPLG00000030775)	ENSAPLG00000016512	OAZ1 (ENSAPLG00000021664)	LINGO3 (ENSAPLG00000001535)	ENSAPLG00000011688	ENSAPLG00000001197	ACTL9 (ENSAPLG00000001413)	NFILZ (ENSAPLG00000002454)	ZAP70 (ENSAPLG00000002455)	ENSAPLG00000002709	MYO1F (ENSAPLG00000002919)	ENSAPLG00000003609	ACER1 (ENSAPLG00000003845) #19	MLLT1 (ENSAPLG00000003964) #20	ACSBG2 (ENSAPLG00000004090) #21	RFX2 (ENSAPLG00000004369) #22	ENSAPLG00000004633	ENSAPLG00000019194	DUS3L (ENSAPLG00000004636) #27	NRTN (ENSAPLG00000027910) #26	ENSAPLG00000001431	ATCAY (ENSAPLG00000004775)
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185.j	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00950000186319	ENSGT00940000159440
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185.j	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b
Chicken	MODERN SPECIES	20	ENSGALG00010027879	OAZ1 (ENSGALG00010027877)	LINGO3 (ENSGALG00010028495)	ENSGALG00010028509	ENSGALG00010028505	ACTL9 (ENSGALG00010028469)	NFILZ (ENSGALG00010028553)	ZAP70 (ENSGALG00010028550)	ADAMTS10 (ENSGALG00010028549)	MYO1F (ENSGALG00010028548)	ZNF414 (ENSGALG00010028544)	ANP32B (ENSGALG00010028543)	ACER1 (ENSGALG00010028570) #19	MLLT1 (ENSGALG00010028568) #20	ACSBG2 (ENSGALG00010028562) #21	RFX2 (ENSGALG00010027873) #22	LARP6L (ENSGALG00010028423)	ENSGALG00010027104	DUS3L (ENSGALG00010027102) #27	NRTN (ENSGALG00010027847) #26	ENSGALG00010027838	ATCAY (ENSGALG00010027831)	NMRK2 (ENSGALG00010027821)	DAPK3 (ENSGALG00010027814)	EEF2 (ENSGALG00010027732)	PIAS4 (ENSGALG00010027113)	ENSGALG00010028424	ZBTB7A (ENSGALG00010028421)	CCDC94 (ENSGALG00010027116)	SHD (ENSGALG00010028506)	ENSGALG00010028417
Turkey	MODERN SPECIES	23	ENSMGAG00000003985	POLR2E (ENSMGAG00000003769)	ENSMGAG00000003801	ENSMGAG00000003788	ENSMGAG00000003863	ENSMGAG00000019922	ENSMGAG00000011153	ENSMGAG00000011162	ENSMGAG00000011170	DAPK3 (ENSMGAG00000021010)	ENSMGAG00000001488	ENSMGAG00000001526	ENSMGAG00000017646 #26	ENSMGAG00000015739	ENSMGAG00000001547 #27	ENSMGAG00000001572 #22	ENSMGAG00000001563	ENSMGAG00000001625 #21	ENSMGAG00000001671 #20	ENSMGAG00000017709 #20	ENSMGAG00000001715 #19	ENSMGAG00000001727	ZNF414 (ENSMGAG00000018540)	ENSMGAG00000001803	ENSMGAG00000001765	ENSMGAG00000019012	ENSMGAG00000001863	NFILZ (ENSMGAG00000022503)	ENSMGAG00000001919	ENSMGAG00000001942	ENSMGAG00000021453
Japanese quail	MODERN SPECIES	20	SF3A2 (ENSCJPG00005009860)	AMH (ENSCJPG00005009856)	OAZ1 (ENSCJPG00005009851)	LINGO3 (ENSCJPG00005009850)	ENSCJPG00005009849	ACTL9 (ENSCJPG00005009843)	NFILZ (ENSCJPG00005009841)	ZAP70 (ENSCJPG00005009839)	ADAMTS10 (ENSCJPG00005009838)	MYO1F (ENSCJPG00005009837)	ZNF414 (ENSCJPG00005009835)	ENSCJPG00005009834	ACER1 (ENSCJPG00005009833) #19	MLLT1 (ENSCJPG00005009832) #20	ACSBG2 (ENSCJPG00005009830) #21	RFX2 (ENSCJPG00005009826) #22	DUS3L (ENSCJPG00005009823) #27	NRTN (ENSCJPG00005009820) #26	ENSCJPG00005009818	ATCAY (ENSCJPG00005009817)	NMRK2 (ENSCJPG00005009783)	ENSCJPG00005009782	EEF2 (ENSCJPG00005009780)	PIAS4 (ENSCJPG00005009779)	ENSCJPG00005009778	ZBTB7A (ENSCJPG00005009777)	YJU2 (ENSCJPG00005009776)	SHD (ENSCJPG00005009775)	ENSCJPG00005009774	FSD1 (ENSCJPG00005009773)	ENSCJPG00005009767 #34
African ostrich	MODERN SPECIES	329					ENSSCUG00000005691	ACTL9 (ENSSCUG00000005689)	NFILZ (ENSSCUG00000005688)	ZAP70 (ENSSCUG00000005685)	ADAMTS10 (ENSSCUG00000005678)	MYO1F (ENSSCUG00000005665)	ENSSCUG00000005661	ENSSCUG00000005656	ACER1 (ENSSCUG00000005655) #19	MLLT1 (ENSSCUG00000005652) #20	ACSBG2 (ENSSCUG00000005650) #21	RFX2 (ENSSCUG00000005647) #22	DUS3L (ENSSCUG00000005643) #27
Australian saltwater crocodile	MODERN SPECIES	26	ENSCPRG00005009392	OAZ1 (ENSCPRG00005009394)	ENSCPRG00005009399	LINGO3 (ENSCPRG00005009405)	ENSCPRG00005009414	ENSCPRG00005009415	ENSCPRG00005009417	ZAP70 (ENSCPRG00005009419)	ADAMTS10 (ENSCPRG00005009438)	MYO1F (ENSCPRG00005009558)	ZNF414 (ENSCPRG00005009595)	ENSCPRG00005009599	ACER1 (ENSCPRG00005009603) #19	MLLT1 (ENSCPRG00005009615) #20	ACSBG2 (ENSCPRG00005009641) #21	RFX2 (ENSCPRG00005009653) #22	ENSCPRG00005009659	PRR22 (ENSCPRG00005009662) #28	DUS3L (ENSCPRG00005009665) #27
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Emydidae	ANCESTRAL SPECIES	14	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000164108.b.d	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Three-toed box turtle	MODERN SPECIES	92	AMH (ENSTMTG00000022619)	LINGO3 (ENSTMTG00000022614)	ACTL9 (ENSTMTG00000022612)	ENSTMTG00000022609	ENSTMTG00000022608	ZAP70 (ENSTMTG00000022599)	ENSTMTG00000022595	ENSTMTG00000022593	ENSTMTG00000022591	MYO1F (ENSTMTG00000022582)	ZNF414 (ENSTMTG00000022574)	ENSTMTG00000022571	ACER1 (ENSTMTG00000022566) #19	MLLT1 (ENSTMTG00000022560) #20	ACSBG2 (ENSTMTG00000022558) #21	RFX2 (ENSTMTG00000022549) #22	ENSTMTG00000022546	PRR22 (ENSTMTG00000022541) #28	DUS3L (ENSTMTG00000022539) #27	NRTN (ENSTMTG00000022537) #26	ENSTMTG00000022536	ATCAY (ENSTMTG00000022532)	NMRK2 (ENSTMTG00000022527)	DAPK3 (ENSTMTG00000022524)	EEF2 (ENSTMTG00000022520)	PIAS4 (ENSTMTG00000022514)	ZBTB7A (ENSTMTG00000022512)	MAP2K2 (ENSTMTG00000022510)	CREB3L3 (ENSTMTG00000022502)	ENSTMTG00000022498	SIRT6 (ENSTMTG00000022496)
painted turtle	MODERN SPECIES	712					ACTL9 (ENSCPBG00000011186)	NFILZ (ENSCPBG00000011185)	ENSCPBG00000011184	ZAP70 (ENSCPBG00000011182)	ADAMTS10 (ENSCPBG00000011174)	MYO1F (ENSCPBG00000011162)	ZNF414 (ENSCPBG00000011160)	ENSCPBG00000011159	ACER1 (ENSCPBG00000011158) #19	MLLT1 (ENSCPBG00000011153) #20	ACSBG2 (ENSCPBG00000011150) #21	RFX2 (ENSCPBG00000011147) #22	ENSCPBG00000011144	PRR22 (ENSCPBG00000011140) #28	DUS3L (ENSCPBG00000011136) #27	NRTN (ENSCPBG00000011135) #26	ENSCPBG00000011134	ATCAY (ENSCPBG00000011131)	NMRK2 (ENSCPBG00000011129)	DAPK3 (ENSCPBG00000011124)	EEF2 (ENSCPBG00000011117)	PIAS4 (ENSCPBG00000011114)	ZBTB7A (ENSCPBG00000011111)	MAP2K2 (ENSCPBG00000011109)	CREB3L3 (ENSCPBG00000011108)	ENSCPBG00000011105	SIRT6 (ENSCPBG00000011103)
Testudinidae	ANCESTRAL SPECIES	20	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Abingdon island giant tortoise	MODERN SPECIES				LINGO3 (ENSCABG00000000015)	ENSCABG00000000021	ENSCABG00000000044	ACTL9 (ENSCABG00000000147)	NFILZ (ENSCABG00000000156)	ZAP70 (ENSCABG00000000169)	ADAMTS10 (ENSCABG00000000218)	MYO1F (ENSCABG00000000392)	ZNF414 (ENSCABG00000000742)	ENSCABG00000000744	ACER1 (ENSCABG00000000748) #19	MLLT1 (ENSCABG00000000749) #20	ACSBG2 (ENSCABG00000000769) #21	RFX2 (ENSCABG00000000813) #22	ENSCABG00000001457	PRR22 (ENSCABG00000001462) #28	DUS3L (ENSCABG00000001466) #27	NRTN (ENSCABG00000001472) #26	ENSCABG00000001475	ATCAY (ENSCABG00000001480)	ENSCABG00000001505	ENSCABG00000001506	EEF2 (ENSCABG00000001509)	PIAS4 (ENSCABG00000001521)	ZBTB7A (ENSCABG00000001566)	MAP2K2 (ENSCABG00000001574)	CREB3L3 (ENSCABG00000001744)	ENSCABG00000001748	SIRT6 (ENSCABG00000001750)
Goode s thornscrub tortoise	MODERN SPECIES	14	OAZ1 (ENSGEVG00005010008)	ENSGEVG00005009986	LINGO3 (ENSGEVG00005009850)	ENSGEVG00005009829	ACTL9 (ENSGEVG00005009788)	NFILZ (ENSGEVG00005009711)	ZAP70 (ENSGEVG00005009658)	ADAMTS10 (ENSGEVG00005009230)	MYO1F (ENSGEVG00005009021)	ENSGEVG00005008954	ZNF414 (ENSGEVG00005008932)	ENSGEVG00005008905	ACER1 (ENSGEVG00005008854) #19	MLLT1 (ENSGEVG00005008772) #20	ACSBG2 (ENSGEVG00005008719) #21	RFX2 (ENSGEVG00005008484) #22	ENSGEVG00005008437	ENSGEVG00005008408	PRR22 (ENSGEVG00005008381) #28	DUS3L (ENSGEVG00005008360) #27	NRTN (ENSGEVG00005008340) #26	ENSGEVG00005008323	ATCAY (ENSGEVG00005008280)	NMRK2 (ENSGEVG00005008195)	DAPK3 (ENSGEVG00005008155)	EEF2 (ENSGEVG00005008117)	PIAS4 (ENSGEVG00005008086)	ZBTB7A (ENSGEVG00005008063)	MAP2K2 (ENSGEVG00005008031)	CREB3L3 (ENSGEVG00005007896)	ENSGEVG00005007845
Chinese turtle	MODERN SPECIES	1362																RFX2 (ENSPSIG00000005029) #22	PRR22 (ENSPSIG00000005022) #28	DUS3L (ENSPSIG00000004965) #27	NRTN (ENSPSIG00000004947) #26	ENSPSIG00000004904	ENSPSIG00000004873
Lepidosauria	ANCESTRAL SPECIES	33	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00440000039287.a.a	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00550000075134 #27	ENSGT00950000182993.A.a #26	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Episquamata	ANCESTRAL SPECIES	44									ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19	ENSGT00950000182907.b
Laterata	ANCESTRAL SPECIES	56	ENSGT00940000164644	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00940000163125	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19	ENSGT00950000182907.b	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Common wall lizard	MODERN SPECIES	9	CHAF1A (ENSPMRG00000022074)	ENSPMRG00000022084	SH3GL1 (ENSPMRG00000022093)	MPND (ENSPMRG00000022113)	STAP2 (ENSPMRG00000022142)	ENSPMRG00000022191	NMRK2 (ENSPMRG00000022201)	ATCAY (ENSPMRG00000022211)	ENSPMRG00000022218	NRTN (ENSPMRG00000022225) #26	ENSPMRG00000022226	DUS3L (ENSPMRG00000022231) #27	MLLT1 (ENSPMRG00000022237) #20	ACSBG2 (ENSPMRG00000022245) #21	ENSPMRG00000022255	RFX2 (ENSPMRG00000022305) #22	ENSPMRG00000022430	PRR22 (ENSPMRG00000022432) #28	ACER1 (ENSPMRG00000022435) #19	ENSPMRG00000022439	ANGPTL4 (ENSPMRG00000022446)	ENSPMRG00000022448	MARCHF2 (ENSPMRG00000022454)	ENSPMRG00000022458	ENSPMRG00000022463	TIMM44 (ENSPMRG00000022478)	CTXN1 (ENSPMRG00000022489)	ENSPMRG00000022496	FBN3 (ENSPMRG00000022515)	ENSPMRG00000022527	ENSPMRG00000022557
Argentine black and white tegu	MODERN SPECIES	109	ENSSMRG00000019637	ENSSMRG00000019636	ENSSMRG00000019635	ENSSMRG00000019634	NDUFA7 (ENSSMRG00000019633)	ENSSMRG00000019632	KANK3 (ENSSMRG00000019631)	NMRK2 (ENSSMRG00000019630)	ATCAY (ENSSMRG00000019629)	ENSSMRG00000019628	ENSSMRG00000019627	NRTN (ENSSMRG00000019626) #26	DUS3L (ENSSMRG00000019625) #27	MLLT1 (ENSSMRG00000019624) #20	ACSBG2 (ENSSMRG00000019531) #21	RFX2 (ENSSMRG00000019530) #22	PRR22 (ENSSMRG00000019529) #28	ACER1 (ENSSMRG00000019527) #19	ENSSMRG00000019526	ANGPTL4 (ENSSMRG00000019523)	ENSSMRG00000019521	MARCHF2 (ENSSMRG00000019520)	ENSSMRG00000019519	ENSSMRG00000019518	TIMM44 (ENSSMRG00000019517)	FBN3 (ENSSMRG00000017819)	CERS4 (ENSSMRG00000017801)	ENSSMRG00000017791	REEP6 (ENSSMRG00000017789)	ENSSMRG00000017788	ENSSMRG00000017787
Toxicofera	ANCESTRAL SPECIES	93										ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19
Elapidae	ANCESTRAL SPECIES	74									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19
Indian cobra	MODERN SPECIES		DIRAS1 (ENSNNAG00000001388)	SLC39A3 (ENSNNAG00000001405)	SGTA (ENSNNAG00000001423)	THOP1 (ENSNNAG00000001453)	ENSNNAG00000001485	LMNB2 (ENSNNAG00000001530)	LINGO3 (ENSNNAG00000001562)	TIMM13 (ENSNNAG00000001582)	ENSNNAG00000001597	TMPRSS9 (ENSNNAG00000001635)	ENSNNAG00000001671	LSM7 (ENSNNAG00000001693)	ADAMTSL5 (ENSNNAG00000001716)	DUS3L (ENSNNAG00000001743) #27	MLLT1 (ENSNNAG00000001761) #20	RFX2 (ENSNNAG00000001833) #22	PRR22 (ENSNNAG00000002060) #28	ENSNNAG00000002070	ENSNNAG00000002104	ENSNNAG00000002121
Elapidae_a	ANCESTRAL SPECIES	165									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19
Blue-lipped sea krait	MODERN SPECIES	5304															ACSBG2 (ENSLLTG00000007942) #21	RFX2 (ENSLLTG00000008022) #22
Acanthophiinae	ANCESTRAL SPECIES	156									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #26	ENSGT00550000075134 #27	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128 #28	ENSGT00730000110920.b.a.a #19
Eastern brown snake	MODERN SPECIES	224						ENSPTXG00000016273	ENSPTXG00000016272	ENSPTXG00000016271	ENSPTXG00000016270	ATCAY (ENSPTXG00000016269)	ENSPTXG00000016268	ENSPTXG00000016267 #26	DUS3L (ENSPTXG00000016266) #27	MLLT1 (ENSPTXG00000016265) #20	ENSPTXG00000016264 #21	RFX2 (ENSPTXG00000016263) #22	PRR22 (ENSPTXG00000016262) #28	ENSPTXG00000016261 #19
tuatara	MODERN SPECIES	1127	ENSSPUG00000012084	ENSSPUG00000012073	ENSSPUG00000012066	ENSSPUG00000012064	ENSSPUG00000012054	ENSSPUG00000012048	ENSSPUG00000012039	ACTL9 (ENSSPUG00000012034)	ZAP70 (ENSSPUG00000012007)	ADAMTS10 (ENSSPUG00000011986)	MYO1F (ENSSPUG00000011896)	ZNF414 (ENSSPUG00000011869)	ENSSPUG00000011855	MLLT1 (ENSSPUG00000011834) #20	ENSSPUG00000011809 #21	RFX2 (ENSSPUG00000011275) #22	ENSSPUG00000011156	DUS3L (ENSSPUG00000011128) #27	NRTN (ENSSPUG00000011111) #26	ENSSPUG00000011097	ATCAY (ENSSPUG00000011081)	ENSSPUG00000011066	NMRK2 (ENSSPUG00000011060)	ENSSPUG00000011042	DAPK3 (ENSSPUG00000011029)	EEF2 (ENSSPUG00000011003)	PIAS4 (ENSSPUG00000010985)	ZBTB7A (ENSSPUG00000010974)	MAP2K2 (ENSSPUG00000010956)	CREB3L3 (ENSSPUG00000010942)	ENSSPUG00000010936
Anura	ANCESTRAL SPECIES	45							ENSGT00390000006809	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000156466.c	ENSGT00390000007212 #24	ENSGT00390000012434 #25	ENSGT00390000010184	ENSGT00950000182993.A.a #26	ENSGT00940000166580	ENSGT00530000063553.b.a #30	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00910000144227	ENSGT00390000006553
Frog	MODERN SPECIES		ENSXETG00000047391	oaz1 (ENSXETG00000013655)	lingo3 (ENSXETG00000013654)	ENSXETG00000047966	XB5727280 [provisional] (ENSXETG00000013652)	ENSXETG00000048067	ENSXETG00000042515	zap70 (ENSXETG00000009491)	adamts10 (ENSXETG00000009497)	myo1f (ENSXETG00000009509)	znf414 (ENSXETG00000037194)	anp32c (ENSXETG00000009516)	acer1 (ENSXETG00000021873) #19	mllt1 (ENSXETG00000021875) #20	acsbg2 (ENSXETG00000021876) #21	rfx2 (ENSXETG00000021877) #22	ENSXETG00000048263	slc1a6 (ENSXETG00000021879)	ranbp3 (ENSXETG00000025475) #23	caps (ENSXETG00000021881)	vmac (ENSXETG00000021884) #24	ndufa11 (ENSXETG00000021885) #25	med11 (ENSXETG00000045957)	nrtn (ENSXETG00000036233) #26	larp6-like.1 (ENSXETG00000021887)	lonp1 (ENSXETG00000021888) #30	rab11b.2 (ENSXETG00000021890)	marchf2 (ENSXETG00000021892)	rab11b.1 (ENSXETG00000025484)	angptl4 (ENSXETG00000021893)	ENSXETG00000046810
Leishan spiny toad	MODERN SPECIES		LONP1 (ENSLLEG00000007346) #30	ERI1 (ENSLLEG00000007305)	MFHAS1 (ENSLLEG00000007276)	ENSLLEG00000007120	CLDN23 (ENSLLEG00000007085)	ENSLLEG00000007070	TBC1D2 (ENSLLEG00000006855)	ELP1 (ENSLLEG00000006626)	APTX (ENSLLEG00000006561)	ENSLLEG00000006511	ENSLLEG00000006467	SMU1 (ENSLLEG00000006161)	ENSLLEG00000005989	ENSLLEG00000005958	ENSLLEG00000005911	RFX2 (ENSLLEG00000005486) #22	ENSLLEG00000005369	ENSLLEG00000005342	ENSLLEG00000005266	ENSLLEG00000005245	ENSLLEG00000005213	ENSLLEG00000005090	ENSLLEG00000005045	YTHDC1 (ENSLLEG00000004932)	ENSLLEG00000004899	ENSLLEG00000004862	ENSLLEG00000004826	COPS4 (ENSLLEG00000004806)	COQ2 (ENSLLEG00000004790)	ENSLLEG00000004774	HPSE (ENSLLEG00000004732)
Coelacanth	MODERN SPECIES	274						ENSLACG00000000418	ACTL9 (ENSLACG00000002671)	ZAP70 (ENSLACG00000007630)	ADAMTS10 (ENSLACG00000008726)	MYO1F (ENSLACG00000010079)	ENSLACG00000022472	ENSLACG00000010958	ACER1 (ENSLACG00000011275) #19	MLLT1 (ENSLACG00000011585) #20	ACSBG2 (ENSLACG00000011979) #21	RFX2 (ENSLACG00000012525) #22	SLC1A6 (ENSLACG00000012883)	RANBP3 (ENSLACG00000013387) #23	CAPS (ENSLACG00000013632)	VMAC (ENSLACG00000013726) #24	NDUFA11 (ENSLACG00000013860) #25	ENSLACG00000014322 #26	ENSLACG00000014893	ENSLACG00000022153	LONP1 (ENSLACG00000015087) #30	RPL36 (ENSLACG00000015161) ##32	LMNB2 (ENSLACG00000015242)	TMPRSS9 (ENSLACG00000015402)	SPPL2B (ENSLACG00000015569)	LSM7 (ENSLACG00000015700)	ENSLACG00000015723
Actinopterygii	ANCESTRAL SPECIES	46						ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000160221	ENSGT00390000018319.a.b.b.b	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT01040000240503.A.a.b	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000165115	ENSGT00390000003420.b
Neopterygii	ANCESTRAL SPECIES	124	ENSGT00940000165304	ENSGT00950000182916.b	ENSGT00390000005318.a	ENSGT00940000156470.u.a	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000160221	ENSGT00390000018319.a.b.b.b	ENSGT00950000182964.a.b.b.a	ENSGT00950000182964.a.b.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00940000165051	ENSGT00940000168675	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231
Osteoglossocephalai	ANCESTRAL SPECIES	168	ENSGT00940000163250.C	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00550000075090	ENSGT00940000156349.d	ENSGT00940000179497	ENSGT00390000014781
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	288	ENSGT00940000161210	ENSGT00940000159560	ENSGT00940000165447	ENSGT00950000183104.B.a.b.a.a	ENSGT00940000163250.C	ENSGT00950000182916.b.a	ENSGT00390000005318.a	ENSGT00940000156470.u.a.e	ENSGT00940000154587.a.b.k	ENSGT01050000244898.a.a.a.a.f	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a.f #19	ENSGT00940000158800.i #20	ENSGT00940000155332.A.b #21	ENSGT01050000244879.a.a.a.c.a #22	ENSGT00940000160489.c
Asian bonytongue	MODERN SPECIES	17	uhrf1 (ENSSFOG00015015944)	FEM1A (ENSSFOG00015028310)	sin3b (ENSSFOG00015016043)	haus5 (ENSSFOG00015016090)	fzr1a (ENSSFOG00015016136)	ENSSFOG00015016197	ENSSFOG00015016220	mfsd12a (ENSSFOG00015016316)	CSNK1G2 (ENSSFOG00015016352)	MKNK2 (ENSSFOG00015016403)	mob3a (ENSSFOG00015031031)	znf414 (ENSSFOG00015016446)	ENSSFOG00015016471	MLLT1 (ENSSFOG00015016629) #20	acsbg2 (ENSSFOG00015016714) #21	rfx2 (ENSSFOG00015015884) #22	FCHO1 (ENSSFOG00015016929)	ENSSFOG00015019833	ENSSFOG00015030021	ENSSFOG00015018570	SOX14 (ENSSFOG00015018592)	KY (ENSSFOG00015018599)	hdlbpa (ENSSFOG00015018627)	septin2 (ENSSFOG00015018742)	FARP2 (ENSSFOG00015018789)	stk25a (ENSSFOG00015018854)	boka (ENSSFOG00015032426)	thap4 (ENSSFOG00015018893)	ENSSFOG00015030498	ENSSFOG00015025136	atg4b (ENSSFOG00015018911)
P. kingsleyae	MODERN SPECIES	168	FEM1A (ENSPKIG00000016096)	sin3b (ENSPKIG00000016126)	haus5 (ENSPKIG00000016198)	fzr1a (ENSPKIG00000016265)	ENSPKIG00000016343	ENSPKIG00000016358	mfsd12a (ENSPKIG00000016382)	CSNK1G2 (ENSPKIG00000016437)	MKNK2 (ENSPKIG00000016487)	MOB3A (ENSPKIG00000016541)	znf414 (ENSPKIG00000016580)	ENSPKIG00000016602	ACER1 (ENSPKIG00000016625) #19	MLLT1 (ENSPKIG00000016661) #20	acsbg2 (ENSPKIG00000016744) #21	rfx2 (ENSPKIG00000016844) #22	FCHO1 (ENSPKIG00000016921)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.a.c.b #22
P. kingsleyae	MODERN SPECIES	4	ticam1 (ENSPKIG00000013407)	dohh (ENSPKIG00000013430)	ENSPKIG00000013453	ENSPKIG00000013559	csnk1g2b (ENSPKIG00000013782)	zgc:101100 (ENSPKIG00000013844)	rexo1 (ENSPKIG00000013884)	MKNK2 (ENSPKIG00000013963)	mob3a (ENSPKIG00000014032)	zap70 (ENSPKIG00000014109)	adamts10 (ENSPKIG00000014227)	myo1f (ENSPKIG00000014349)	acer1 (ENSPKIG00000014515) #19	MLLT1 (ENSPKIG00000014598) #20	acsbg2 (ENSPKIG00000014669) #21	rfx2 (ENSPKIG00000014708) #22	FCHO1 (ENSPKIG00000014760)	znf692 (ENSPKIG00000014868)	ENSPKIG00000014928	trabd2b (ENSPKIG00000014949)	FOXD2 (ENSPKIG00000014966)	foxe3 (ENSPKIG00000014975)	ENSPKIG00000014992	FAM78B (ENSPKIG00000015016)	notch2 (ENSPKIG00000015036)	sec22bb (ENSPKIG00000015103)	npl (ENSPKIG00000015152)	EDEM3 (ENSPKIG00000015241)	ENSPKIG00000015324	colgalt2b (ENSPKIG00000015349)	rgl1 (ENSPKIG00000015438)
Osteoglossiformes	ANCESTRAL SPECIES	21	ENSGT00940000163706	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b.b	ENSGT00940000156470.u.a.f	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.l	ENSGT01050000244898.a.a.a.a.e	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a.e #19	ENSGT00940000158800.j #20	ENSGT00940000155332.A.a #21	ENSGT01050000244879.a.a.a.d #22	ENSGT00940000160489.d	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b	ENSGT00950000182827.C.b.e	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00940000164993.h
Asian bonytongue	MODERN SPECIES	24	tax1bp3 (ENSSFOG00015024929)	hsh2d (ENSSFOG00015019079)	RAB8A (ENSSFOG00015019045)	ENSSFOG00015019031	tpm4a (ENSSFOG00015027692)	csnk1g2b (ENSSFOG00015001156)	rexo1 (ENSSFOG00015001227)	MKNK2 (ENSSFOG00015001269)	ENSSFOG00015001332	zap70 (ENSSFOG00015001357)	adamts10 (ENSSFOG00015001432)	myo1f (ENSSFOG00015001538)	acer1 (ENSSFOG00015001670) #19	MLLT1 (ENSSFOG00015001697) #20	acsbg2 (ENSSFOG00015001707) #21	RFX2 (ENSSFOG00015001763) #22	ENSSFOG00015001887	ENSSFOG00015032403	ENSSFOG00015001909	ENSSFOG00015001913	trabd2b (ENSSFOG00015001921)	ENSSFOG00015001956	foxe3 (ENSSFOG00015030464)	ENSSFOG00015001995	FAM78B (ENSSFOG00015032449)	slc35a3a (ENSSFOG00015029638)	notch2 (ENSSFOG00015002074)	sec22bb (ENSSFOG00015002089)	npl (ENSSFOG00015002121)	EDEM3 (ENSSFOG00015002175)	ENSSFOG00015002257
Clupeocephala	ANCESTRAL SPECIES	25	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Euteleosteomorpha	ANCESTRAL SPECIES	39	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	55	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g	ENSGT00940000161911
Huchen	MODERN SPECIES	116	OSBPL1A (ENSHHUG00000022411)	ENSHHUG00000022566	dohh (ENSHHUG00000022574)	ENSHHUG00000022579	csnk1g2b (ENSHHUG00000022594)	zgc:101100 (ENSHHUG00000022621)	rexo1 (ENSHHUG00000022628)	mknk2b (ENSHHUG00000022698)	mob3a (ENSHHUG00000022781)	zap70 (ENSHHUG00000022788)	adamts10 (ENSHHUG00000022828)	myo1f (ENSHHUG00000022919)	ENSHHUG00000023573	MLLT1 (ENSHHUG00000023574) #20	acsbg2 (ENSHHUG00000023602) #21	rfx2 (ENSHHUG00000023673) #22	FCHO1 (ENSHHUG00000023884)	ENSHHUG00000023903	ENSHHUG00000023907	trabd2b (ENSHHUG00000023954)	ENSHHUG00000023959	foxe3 (ENSHHUG00000023960)	ENSHHUG00000023961	FAM78B (ENSHHUG00000023964)	slc35a3a (ENSHHUG00000023965)	ENSHHUG00000023970	sec22bb (ENSHHUG00000024045)	EDEM3 (ENSHHUG00000024155)	ENSHHUG00000024606	colgalt2b (ENSHHUG00000024610)	ENSHHUG00000024689
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g.a	ENSGT00940000156012.g.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000161645.a.b	ENSGT00940000162270.l	ENSGT00940000160589	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00530000063604.B.f	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000161645.a.b	ENSGT00940000162270.l	ENSGT00940000160589	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00530000063604.B.f	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g
Coho salmon	MODERN SPECIES	1	OSBPL1A (ENSOKIG00005044602)	dohh (ENSOKIG00005044565)	ENSOKIG00005044560	ENSOKIG00005044512	csnk1g2b (ENSOKIG00005044273)	zgc:101100 (ENSOKIG00005044246)	rexo1 (ENSOKIG00005044126)	mknk2b (ENSOKIG00005043977)	mob3a (ENSOKIG00005043906)	zap70 (ENSOKIG00005043589)	adamts10 (ENSOKIG00005043063)	myo1f (ENSOKIG00005041980)	ENSOKIG00005041835	MLLT1 (ENSOKIG00005041829) #20	acsbg2 (ENSOKIG00005039904) #21	rfx2 (ENSOKIG00005038974) #22	ENSOKIG00005038661	ENSOKIG00005038598	trabd2b (ENSOKIG00005038587)	foxd2 (ENSOKIG00005038584)	foxe3 (ENSOKIG00005038574)	ENSOKIG00005038561	FAM78B (ENSOKIG00005038555)	slc35a3a (ENSOKIG00005038524)	ENSOKIG00005036482	sec22bb (ENSOKIG00005036343)	EDEM3 (ENSOKIG00005034346)	zgc:92140 (ENSOKIG00005034264)	colgalt2b (ENSOKIG00005033835)	ENSOKIG00005033797	rgl1 (ENSOKIG00005033524)
Chinook salmon	MODERN SPECIES		OSBPL1A (ENSOTSG00005019172)	dohh (ENSOTSG00005019136)	ENSOTSG00005019135	ENSOTSG00005019134	csnk1g2b (ENSOTSG00005016138)	zgc:101100 (ENSOTSG00005016130)	rexo1 (ENSOTSG00005016121)	mknk2b (ENSOTSG00005016120)	mob3a (ENSOTSG00005016118)	zap70 (ENSOTSG00005016103)	adamts10 (ENSOTSG00005016101)	myo1f (ENSOTSG00005006477)	ENSOTSG00005006441	MLLT1 (ENSOTSG00005006436) #20	acsbg2 (ENSOTSG00005001608) #21	rfx2 (ENSOTSG00005000590) #22	ENSOTSG00005000585	FCHO1 (ENSOTSG00005000584)	ENSOTSG00005000555	trabd2b (ENSOTSG00005000549)	ENSOTSG00005000546	foxe3 (ENSOTSG00005000542)	CMPK1 (ENSOTSG00005000526)	FAM78B (ENSOTSG00005000524)	slc35a3a (ENSOTSG00005000521)	ENSOTSG00005000498	sec22bb (ENSOTSG00005000484)	npl (ENSOTSG00005000477)	EDEM3 (ENSOTSG00005000300)	zgc:92140 (ENSOTSG00005000290)	colgalt2b (ENSOTSG00005000273)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000068827	csnk1g2b (ENSOMYG00000016363)	zgc:101100 (ENSOMYG00000016316)	rexo1 (ENSOMYG00000016208)	mknk2b (ENSOMYG00000015307)	mob3a (ENSOMYG00000015179)	zap70 (ENSOMYG00000015083)	ENSOMYG00000055289	adamts10 (ENSOMYG00000014266)	myo1f (ENSOMYG00000013020)	ENSOMYG00000012771	MLLT1 (ENSOMYG00000012739) #20	ENSOMYG00000060138	acsbg2 (ENSOMYG00000010903) #21	ENSOMYG00000068838	rfx2 (ENSOMYG00000008539) #22	ENSOMYG00000006703	ENSOMYG00000005782	trabd2b (ENSOMYG00000005723)	foxd2 (ENSOMYG00000005681)	foxe3 (ENSOMYG00000005638)	ENSOMYG00000005624	ENSOMYG00000005617	ENSOMYG00000077135	slc35a3a (ENSOMYG00000005581)	ENSOMYG00000004919	sec22bb (ENSOMYG00000004335)	ENSOMYG00000070316	ENSOMYG00000003138	ENSOMYG00000002527	colgalt2b (ENSOMYG00000002201)
Salmo	ANCESTRAL SPECIES	20	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g.a	ENSGT00940000161911
Atlantic salmon	MODERN SPECIES	15	ttc39c (ENSSSAG00000108341)	ENSSSAG00000046495	dohh (ENSSSAG00000049052)	ENSSSAG00000109617	csnk1g2b (ENSSSAG00000049477)	zgc:101100 (ENSSSAG00000082428)	rexo1 (ENSSSAG00000055373)	mknk2b (ENSSSAG00000055516)	MOL2A (ENSSSAG00000058254)	zap70 (ENSSSAG00000058389)	adamts10 (ENSSSAG00000060607)	myo1f (ENSSSAG00000063313)	ENSSSAG00000067427	MLLT1 (ENSSSAG00000067432) #20	acsbg2 (ENSSSAG00000067459) #21	rfx2 (ENSSSAG00000067771) #22	ENSSSAG00000070105	ENSSSAG00000070202	trabd2b (ENSSSAG00000070206)	ENSSSAG00000102893	foxe3 (ENSSSAG00000110499)	ENSSSAG00000070212	ENSSSAG00000101357	slc35a3a (ENSSSAG00000095541)	ENSSSAG00000070229	sec22bb (ENSSSAG00000089571)	ENSSSAG00000070326	zgc:92140 (ENSSSAG00000071110)	colgalt2b (ENSSSAG00000072298)	rgl1 (ENSSSAG00000098678)	rgl1 (ENSSSAG00000068385)
River trout	MODERN SPECIES	33	OSBPL1A (ENSSTUG00000021734)	dohh (ENSSTUG00000022045)	ENSSTUG00000022062	ENSSTUG00000022183	csnk1g2b (ENSSTUG00000022202)	zgc:101100 (ENSSTUG00000022852)	rexo1 (ENSSTUG00000022867)	mknk2b (ENSSTUG00000023091)	mob3a (ENSSTUG00000023905)	zap70 (ENSSTUG00000023942)	adamts10 (ENSSTUG00000024186)	myo1f (ENSSTUG00000024894)	ENSSTUG00000029467	MLLT1 (ENSSTUG00000029569) #20	acsbg2 (ENSSTUG00000029674) #21	rfx2 (ENSSTUG00000030823) #22	FCHO1 (ENSSTUG00000000933)	ENSSTUG00000001016	trabd2b (ENSSTUG00000001035)	ENSSTUG00000001039	foxe3 (ENSSTUG00000001041)	ENSSTUG00000001053	FAM78B (ENSSTUG00000001101)	slc35a3a (ENSSTUG00000001103)	ENSSTUG00000001112	sec22bb (ENSSTUG00000001196)	EDEM3 (ENSSTUG00000001227)	zgc:92140 (ENSSTUG00000001326)	colgalt2b (ENSSTUG00000001375)	ENSSTUG00000001705	rgl1 (ENSSTUG00000001767)
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00940000165304.d.b	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.h.a
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.h.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a.a	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B.e	ENSGT00940000159391.a	ENSGT00940000164993.h.a	ENSGT01030000234558.C.p.d
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000165304.d.b	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a.a	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B.e	ENSGT00940000159391.a	ENSGT00940000164993.h.a	ENSGT01030000234558.C.p.d
Chinook salmon	MODERN SPECIES	29	rgl1 (ENSOTSG00005042428)	ENSOTSG00005042439	colgalt2b (ENSOTSG00005042444)	ENSOTSG00005042669	EDEM3 (ENSOTSG00005042670)	npl (ENSOTSG00005042671)	sec22bb (ENSOTSG00005042672)	ENSOTSG00005042673	slc35a3a (ENSOTSG00005044237)	FAM78B (ENSOTSG00005044238)	foxe3 (ENSOTSG00005044239)	foxd2 (ENSOTSG00005044240)	trabd2b (ENSOTSG00005044241)	ENSOTSG00005044242	ENSOTSG00005044244	rfx2 (ENSOTSG00005044249) #22	ENSOTSG00005044262	ENSOTSG00005044263 #21	acsbg2 (ENSOTSG00005044264) #21	myo1f (ENSOTSG00005044266)	MLLT1 (ENSOTSG00005027970) #20	ENSOTSG00005027971	ENSOTSG00005027972	ENSOTSG00005027974	ENSOTSG00005027975	mob3a (ENSOTSG00005027976)	zap70 (ENSOTSG00005027981)	ENSOTSG00005028165	rexo1 (ENSOTSG00005028166)	ENSOTSG00005028168	zgc:101100 (ENSOTSG00005028169)
Coho salmon	MODERN SPECIES	4	ENSOKIG00005039510	ENSOKIG00005039549	MFSD12 (ENSOKIG00005039690)	csnk1g2b (ENSOKIG00005039846)	zgc:101100 (ENSOKIG00005040146)	rexo1 (ENSOKIG00005040161)	mknk2b (ENSOKIG00005040517)	ENSOKIG00005043317	mob3a (ENSOKIG00005043325)	zap70 (ENSOKIG00005043407)	adamts10 (ENSOKIG00005043773)	myo1f (ENSOKIG00005044305)	acer1 (ENSOKIG00005045889) #19	MLLT1 (ENSOKIG00005045895) #20	acsbg2 (ENSOKIG00005045943) #21	rfx2 (ENSOKIG00005032940) #22	FCHO1 (ENSOKIG00005033054)	ENSOKIG00005033096	ENSOKIG00005033113	trabd2b (ENSOKIG00005033150)	foxd2 (ENSOKIG00005033158)	foxe3 (ENSOKIG00005033170)	ENSOKIG00005033183	FAM78B (ENSOKIG00005033207)	slc35a3a (ENSOKIG00005033216)	ENSOKIG00005033241	ENSOKIG00005033489	sec22bb (ENSOKIG00005033505)	npl (ENSOKIG00005033531)	EDEM3 (ENSOKIG00005033692)	ENSOKIG00005035789
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000012314	ENSOMYG00000012222	ENSOMYG00000012052	ENSOMYG00000065433	csnk1g2b (ENSOMYG00000011813)	zgc:101100 (ENSOMYG00000060472)	rexo1 (ENSOMYG00000011649)	mknk2b (ENSOMYG00000009233)	mob3a (ENSOMYG00000008460)	zap70 (ENSOMYG00000008417)	adamts10 (ENSOMYG00000008201)	myo1f (ENSOMYG00000006683)	acer1 (ENSOMYG00000004710) #19	MLLT1 (ENSOMYG00000004611) #20	acsbg2 (ENSOMYG00000004414) #21	rfx2 (ENSOMYG00000003657) #22	ENSOMYG00000003108	ENSOMYG00000003018	ENSOMYG00000003007	ENSOMYG00000057606	trabd2b (ENSOMYG00000002995)	foxd2 (ENSOMYG00000002982)	foxe3 (ENSOMYG00000002965)	ENSOMYG00000002955	slc35a3a (ENSOMYG00000002901)	ENSOMYG00000002728	sec22bb (ENSOMYG00000002343)	npl (ENSOMYG00000002323)	ENSOMYG00000002237	zgc:92140 (ENSOMYG00000048627)	colgalt2b (ENSOMYG00000001896)
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000165304.d.b	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.g
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000038784	ENSSSAG00000119538	ENSSSAG00000082093	ENSSSAG00000121571	csnk1g2b (ENSSSAG00000029722)	zgc:101100 (ENSSSAG00000084310)	rexo1 (ENSSSAG00000027611)	mknk2b (ENSSSAG00000015810)	MOL2A (ENSSSAG00000015743)	zap70 (ENSSSAG00000015668)	adamts10 (ENSSSAG00000015231)	myo1f (ENSSSAG00000005548)	acer1 (ENSSSAG00000089657) #19	MLLT1 (ENSSSAG00000005316) #20	acsbg2 (ENSSSAG00000072046) #21	rfx2 (ENSSSAG00000071450) #22	ENSSSAG00000071378	ENSSSAG00000086480	ENSSSAG00000071365	trabd2b (ENSSSAG00000071360)	ENSSSAG00000071357	foxe3 (ENSSSAG00000119022)	ENSSSAG00000013653	ENSSSAG00000071353	S35A3 (ENSSSAG00000071350)	ENSSSAG00000071276	npl (ENSSSAG00000071259)	edem3 (ENSSSAG00000071138)	colgalt2b (ENSSSAG00000069716)	ENSSSAG00000069658	ENSSSAG00000073011
River trout	MODERN SPECIES	14	ENSSTUG00000044896	MFSD12 (ENSSTUG00000044667)	ENSSTUG00000044653	csnk1g2b (ENSSTUG00000044368)	zgc:101100 (ENSSTUG00000044345)	rexo1 (ENSSTUG00000044317)	mknk2b (ENSSTUG00000043323)	mob3a (ENSSTUG00000043251)	zap70 (ENSSTUG00000043190)	ENSSTUG00000043175	adamts10 (ENSSTUG00000042771)	myo1f (ENSSTUG00000042330)	acer1 (ENSSTUG00000042126) #19	MLLT1 (ENSSTUG00000042115) #20	acsbg2 (ENSSTUG00000040975) #21	rfx2 (ENSSTUG00000040583) #22	FCHO1 (ENSSTUG00000039051)	ENSSTUG00000038993	ENSSTUG00000038987	ENSSTUG00000038968	trabd2b (ENSSTUG00000038963)	FOXD2 (ENSSTUG00000038958)	foxe3 (ENSSTUG00000038952)	FAM78B (ENSSTUG00000038941)	slc35a3a (ENSSTUG00000038929)	NOTCH2 (ENSSTUG00000038755)	sec22bb (ENSSTUG00000038729)	npl (ENSSTUG00000038701)	EDEM3 (ENSSTUG00000036687)	ENSSTUG00000036611	colgalt2b (ENSSTUG00000036356)
Huchen	MODERN SPECIES	491	ENSHHUG00000049069	MFSD12 (ENSHHUG00000049047)	csnk1g2b (ENSHHUG00000048933)	zgc:101100 (ENSHHUG00000048924)	rexo1 (ENSHHUG00000048899)	mknk2b (ENSHHUG00000048852)	mob3a (ENSHHUG00000048847)	zap70 (ENSHHUG00000048767)	ENSHHUG00000048762	adamts10 (ENSHHUG00000048726)	myo1f (ENSHHUG00000048611)	acer1 (ENSHHUG00000048604) #19	ENSHHUG00000048599 #20	MLLT1 (ENSHHUG00000048596) #20	acsbg2 (ENSHHUG00000048549) #21	rfx2 (ENSHHUG00000048514) #22	FCHO1 (ENSHHUG00000048488)	ENSHHUG00000048479	ENSHHUG00000048443	trabd2b (ENSHHUG00000048439)	ENSHHUG00000048435	ENSHHUG00000048430
Northern pike	MODERN SPECIES	7	OSBPL1A (ENSELUG00000013634)	dohh (ENSELUG00000013668)	ENSELUG00000013777	MFSD12 (ENSELUG00000013866)	csnk1g2b (ENSELUG00000013973)	zgc:101100 (ENSELUG00000014000)	rexo1 (ENSELUG00000014078)	mknk2b (ENSELUG00000014125)	mob3a (ENSELUG00000014142)	zap70 (ENSELUG00000014203)	adamts10 (ENSELUG00000014328)	myo1f (ENSELUG00000014496)	acer1 (ENSELUG00000014533) #19	mllt1b (ENSELUG00000014600) #20	acsbg2 (ENSELUG00000014696) #21	rfx2 (ENSELUG00000014877) #22	FCHO1 (ENSELUG00000015040)	ENSELUG00000015061	ENSELUG00000015150	trabd2b (ENSELUG00000015227)	foxd2 (ENSELUG00000015240)	foxe3 (ENSELUG00000015256)	FAM78B (ENSELUG00000015267)	slc35a3a (ENSELUG00000015289)	notch2 (ENSELUG00000015318)	sec22bb (ENSELUG00000015377)	npl (ENSELUG00000015432)	EDEM3 (ENSELUG00000015492)	ENSELUG00000033188	colgalt2b (ENSELUG00000015546)	rgl1 (ENSELUG00000015605)
Acanthomorphata	ANCESTRAL SPECIES	91	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886
Euacanthomorphacea	ANCESTRAL SPECIES	59	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Tiger tail seahorse	MODERN SPECIES	242	babam1 (ENSHCOG00000007500)	nr2f6b (ENSHCOG00000007487)	ENSHCOG00000007475	MFSD12 (ENSHCOG00000000596)	csnk1g2b (ENSHCOG00000007442)	zgc:101100 (ENSHCOG00000007406)	rexo1 (ENSHCOG00000000248)	mknk2b (ENSHCOG00000000235)	mob3a (ENSHCOG00000007245)	zap70 (ENSHCOG00000007230)	adamts10 (ENSHCOG00000007179)	myo1f (ENSHCOG00000007131)	acer1 (ENSHCOG00000007036) #19	mllt1b (ENSHCOG00000006999) #20	acsbg2 (ENSHCOG00000006973) #21	rfx2 (ENSHCOG00000006936) #22	ENSHCOG00000006813	prg4b (ENSHCOG00000006734)	tprb (ENSHCOG00000006718)	pdcb (ENSHCOG00000006701)	ENSHCOG00000006697	ptgs2b (ENSHCOG00000006679)	PLA2G4A (ENSHCOG00000006631)	arpc5b (ENSHCOG00000006582)	ENSHCOG00000006545	PDE4B (ENSHCOG00000006349)	SGIP1 (ENSHCOG00000006326)	ENSHCOG00000006288	pars2 (ENSHCOG00000006282)	ttc4 (ENSHCOG00000006269)	ENSHCOG00000006266
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Climbing perch	MODERN SPECIES	17	nr2f6b (ENSATEG00000025377)	ENSATEG00000017528	ENSATEG00000017538	csnk1g2b (ENSATEG00000017578)	zgc:101100 (ENSATEG00000017632)	rexo1 (ENSATEG00000017639)	mknk2b (ENSATEG00000017680)	mob3a (ENSATEG00000017693)	zap70 (ENSATEG00000017719)	adamts10 (ENSATEG00000017768)	myo1f (ENSATEG00000017840)	acer1 (ENSATEG00000018000) #19	ENSATEG00000018017	MLLT1 (ENSATEG00000018031) #20	acsbg2 (ENSATEG00000018143) #21	rfx2 (ENSATEG00000018206) #22	ENSATEG00000018311	ENSATEG00000018352	tprb (ENSATEG00000018375)	pdcb (ENSATEG00000018481)	ptgs2b (ENSATEG00000018490)	PLA2G4A (ENSATEG00000018531)	arpc5b (ENSATEG00000005041)	ENSATEG00000018805	ivns1abpa (ENSATEG00000018892)	ENSATEG00000018946	ENSATEG00000018969	ENSATEG00000029942	ENSATEG00000019054	ENSATEG00000019254	ENSATEG00000025634
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000025393	nr2f6b (ENSBSLG00000025113)	MFSD12 (ENSBSLG00000025105)	csnk1g2b (ENSBSLG00000024917)	zgc:101100 (ENSBSLG00000024877)	ENSBSLG00000024874	rexo1 (ENSBSLG00000024871)	mknk2b (ENSBSLG00000024807)	mob3a (ENSBSLG00000024797)	zap70 (ENSBSLG00000024742)	adamts10 (ENSBSLG00000024651)	myo1f (ENSBSLG00000024477)	acer1 (ENSBSLG00000024437) #19	mllt1b (ENSBSLG00000024420) #20	acsbg2 (ENSBSLG00000024278) #21	rfx2 (ENSBSLG00000024149) #22	FCHO1 (ENSBSLG00000023913)	prg4b (ENSBSLG00000023817)	tprb (ENSBSLG00000023511)	pdcb (ENSBSLG00000023437)	ptgs2b (ENSBSLG00000022926)	PLA2G4A (ENSBSLG00000021416)	arpc5b (ENSBSLG00000021235)	ENSBSLG00000021063	ivns1abpa (ENSBSLG00000020495)	ENSBSLG00000020490	anos1b (ENSBSLG00000020466)	ENSBSLG00000020461	ENSBSLG00000020453	ENSBSLG00000020448	PDE4B (ENSBSLG00000020398)
Zig-zag eel	MODERN SPECIES	18	nr2f6b (ENSMAMG00000007171)	ENSMAMG00000007182	ENSMAMG00000007193	ENSMAMG00000026740	csnk1g2b (ENSMAMG00000007225)	zgc:101100 (ENSMAMG00000007249)	rexo1 (ENSMAMG00000007267)	mknk2b (ENSMAMG00000007284)	mob3a (ENSMAMG00000007296)	zap70 (ENSMAMG00000007310)	adamts10 (ENSMAMG00000007350)	myo1f (ENSMAMG00000007412)	acer1 (ENSMAMG00000007542) #19	MLLT1 (ENSMAMG00000007562) #20	acsbg2 (ENSMAMG00000007602) #21	rfx2 (ENSMAMG00000007645) #22	ENSMAMG00000007794	prg4b (ENSMAMG00000007891)	tprb (ENSMAMG00000007922)	pdcb (ENSMAMG00000008199)	ptgs2b (ENSMAMG00000008217)	PLA2G4A (ENSMAMG00000008256)	arpc5b (ENSMAMG00000027530)	ENSMAMG00000008367	ivns1abpa (ENSMAMG00000008599)	ENSMAMG00000027719	ENSMAMG00000008644	ENSMAMG00000008671	ENSMAMG00000008712	ENSMAMG00000008755	ENSMAMG00000008829
Carangaria	ANCESTRAL SPECIES	7	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Seriola	ANCESTRAL SPECIES		ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Yellowtail amberjack	MODERN SPECIES	3236									mob3a (ENSSLDG00000006245)	zap70 (ENSSLDG00000006213)	adamts10 (ENSSLDG00000006157)	myo1f (ENSSLDG00000006076)	acer1 (ENSSLDG00000006061) #19	mllt1b (ENSSLDG00000006004) #20	acsbg2 (ENSSLDG00000005964) #21	rfx2 (ENSSLDG00000005856) #22	FCHO1 (ENSSLDG00000005759)	prg4b (ENSSLDG00000005684)	tprb (ENSSLDG00000004801)	pdcb (ENSSLDG00000004588)	ptgs2b (ENSSLDG00000004537)	PLA2G4A (ENSSLDG00000004424)	arpc5b (ENSSLDG00000004389)	ENSSLDG00000003997	ivns1abpa (ENSSLDG00000003871)	ENSSLDG00000003821	anos1b (ENSSLDG00000003777)	ENSSLDG00000003734	PDE4B (ENSSLDG00000003622)	SGIP1 (ENSSLDG00000003534)	ENSSLDG00000003514
Greater amberjack	MODERN SPECIES		ENSSDUG00000010729	nr2f6b (ENSSDUG00000010748)	ENSSDUG00000010764	MFSD12 (ENSSDUG00000010780)	csnk1g2b (ENSSDUG00000010799)	zgc:101100 (ENSSDUG00000010853)	rexo1 (ENSSDUG00000010872)	mknk2b (ENSSDUG00000010893)	mob3a (ENSSDUG00000010929)	zap70 (ENSSDUG00000010940)	adamts10 (ENSSDUG00000010968)	myo1f (ENSSDUG00000011023)	acer1 (ENSSDUG00000011086) #19	mllt1b (ENSSDUG00000011105) #20	acsbg2 (ENSSDUG00000011128) #21	rfx2 (ENSSDUG00000011186) #22	FCHO1 (ENSSDUG00000011341)	prg4b (ENSSDUG00000011378)	tprb (ENSSDUG00000011451)	pdcb (ENSSDUG00000011874)	ptgs2b (ENSSDUG00000011896)	PLA2G4A (ENSSDUG00000011954)	arpc5b (ENSSDUG00000012029)	HMCN1 (ENSSDUG00000012070)	ivns1abpa (ENSSDUG00000012273)	ENSSDUG00000012345	ENSSDUG00000012376	ENSSDUG00000012406	PDE4B (ENSSDUG00000012442)	SGIP1 (ENSSDUG00000012569)	ENSSDUG00000012612
Barramundi perch	MODERN SPECIES	22	ENSLCAG00010007217	MFSD12 (ENSLCAG00010007229)	csnk1g2b (ENSLCAG00010007276)	zgc:101100 (ENSLCAG00010007341)	rexo1 (ENSLCAG00010007348)	mknk2b (ENSLCAG00010007353)	mob3a (ENSLCAG00010007373)	zap70 (ENSLCAG00010007388)	adamts10 (ENSLCAG00010007450)	myo1f (ENSLCAG00010007644)	acer1 (ENSLCAG00010007734) #19	ENSLCAG00010007735 #20	ENSLCAG00010007738 #20	MLLT1 (ENSLCAG00010007740) #20	acsbg2 (ENSLCAG00010007798) #21	rfx2 (ENSLCAG00010008058) #22	FCHO1 (ENSLCAG00010008111)	ENSLCAG00010008124	tprb (ENSLCAG00010008223)	pdcb (ENSLCAG00010008431)	ptgs2b (ENSLCAG00010008447)	PLA2G4A (ENSLCAG00010008575)	arpc5b (ENSLCAG00010009074)	HMCN1 (ENSLCAG00010009084)	ivns1abpa (ENSLCAG00010009110)	anos1b (ENSLCAG00010009167)	ENSLCAG00010009179	PDE4B (ENSLCAG00010009202)	SGIP1 (ENSLCAG00010009243)	ENSLCAG00010009264	pars2 (ENSLCAG00010009267)
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Turbot	MODERN SPECIES	3	babam1 (ENSSMAG00000020939)	nr2f6b (ENSSMAG00000020934)	ENSSMAG00000020925	csnk1g2b (ENSSMAG00000020921)	zgc:101100 (ENSSMAG00000020920)	rexo1 (ENSSMAG00000020919)	mknk2b (ENSSMAG00000020917)	mob3a (ENSSMAG00000020916)	zap70 (ENSSMAG00000020913)	adamts10 (ENSSMAG00000020907)	myo1f (ENSSMAG00000020895)	acer1 (ENSSMAG00000020892) #19	ENSSMAG00000023627 #20	MLLT1 (ENSSMAG00000020889) #20	acsbg2 (ENSSMAG00000020881) #21	rfx2 (ENSSMAG00000020840) #22	ENSSMAG00000020818	prg4b (ENSSMAG00000020813)	tprb (ENSSMAG00000020792)	pdcb (ENSSMAG00000020791)	ptgs2b (ENSSMAG00000020788)	PLA2G4A (ENSSMAG00000020783)	arpc5b (ENSSMAG00000020781)	HMCN1 (ENSSMAG00000020769)	ivns1abpa (ENSSMAG00000020763)	ENSSMAG00000020759	ENSSMAG00000020761	ENSSMAG00000020753	ENSSMAG00000020750	ENSSMAG00000020743	ENSSMAG00000020717
Tongue sole	MODERN SPECIES	11	nr2f6b (ENSCSEG00000016625)	ENSCSEG00000016641	csnk1g2b (ENSCSEG00000016660)	zgc:101100 (ENSCSEG00000016680)	rexo1 (ENSCSEG00000016683)	mknk2b (ENSCSEG00000016700)	mob3a (ENSCSEG00000016707)	ENSCSEG00000016719	zap70 (ENSCSEG00000016726)	adamts10 (ENSCSEG00000016770)	myo1f (ENSCSEG00000016814)	acer1 (ENSCSEG00000016881) #19	mllt1b (ENSCSEG00000016890) #20	acsbg2 (ENSCSEG00000016905) #21	acsbg2 (ENSCSEG00000016928) #21	rfx2 (ENSCSEG00000016950) #22	FCHO1 (ENSCSEG00000017008)	ENSCSEG00000017095	ENSCSEG00000017108	tprb (ENSCSEG00000017130)	pdcb (ENSCSEG00000017159)	ptgs2b (ENSCSEG00000017165)	PLA2G4A (ENSCSEG00000017191)	arpc5b (ENSCSEG00000017223)	HMCN1 (ENSCSEG00000017242)	ivns1abpa (ENSCSEG00000017339)	ENSCSEG00000017352	anos1b (ENSCSEG00000017368)	ENSCSEG00000017386	PDE4B (ENSCSEG00000017412)	SGIP1 (ENSCSEG00000017476)
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000154614	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
Fugu	MODERN SPECIES	12	babam1 (ENSTRUG00000004088)	ENSTRUG00000030865	nr2f6b (ENSTRUG00000004353)	ENSTRUG00000004523	csnk1g2b (ENSTRUG00000022105)	zgc:101100 (ENSTRUG00000028347)	rexo1 (ENSTRUG00000005201)	mknk2b (ENSTRUG00000005505)	mob3a (ENSTRUG00000027826)	zap70 (ENSTRUG00000006051)	adamts10 (ENSTRUG00000006697)	myo1f (ENSTRUG00000007576)	acer1 (ENSTRUG00000008139) #19	mllt1b (ENSTRUG00000008154) #20	acsbg2 (ENSTRUG00000008229) #21	rfx2 (ENSTRUG00000008788) #22	FCHO1 (ENSTRUG00000009109)	prg4b (ENSTRUG00000002244)	tprb (ENSTRUG00000002419)	pdcb (ENSTRUG00000004109)	ptgs2b (ENSTRUG00000004240)	PLA2G4A (ENSTRUG00000004829)	ARPC5 (ENSTRUG00000032458)	ENSTRUG00000006420	ivns1abpa (ENSTRUG00000006013)	anos1b (ENSTRUG00000006504)	ENSTRUG00000006795	PDE4B (ENSTRUG00000018562)	SGIP1 (ENSTRUG00000018561)	insl5a (ENSTRUG00000032631)	pars2 (ENSTRUG00000018560)
Tetraodon	MODERN SPECIES		fam163ab (ENSTNIG00000010171)	ENSTNIG00000010170	GPR52 (ENSTNIG00000000197)	csnk1g2b (ENSTNIG00000010169)	zgc:101100 (ENSTNIG00000010168)	rexo1 (ENSTNIG00000010167)	mknk2b (ENSTNIG00000010166)	mob3a (ENSTNIG00000010165)	zap70 (ENSTNIG00000010164)	adamts10 (ENSTNIG00000010163)	myo1f (ENSTNIG00000010162)	acer1 (ENSTNIG00000010161) #19	mllt1b (ENSTNIG00000002253) #20	ENSTNIG00000004323 #21	ENSTNIG00000005712 #20	rfx2 (ENSTNIG00000018128) #22	FCHO1 (ENSTNIG00000018127)	arpc5b (ENSTNIG00000018126)	PLA2G4A (ENSTNIG00000018125)	ptgs2b (ENSTNIG00000018124)	pdcb (ENSTNIG00000018123)	tprb (ENSTNIG00000018122)	prg4b (ENSTNIG00000018121)	ENSTNIG00000018120	ivns1abpa (ENSTNIG00000018119)	ENSTNIG00000018118	anos1b (ENSTNIG00000018117)	ENSTNIG00000018116	PDE4B (ENSTNIG00000018115)	SGIP1 (ENSTNIG00000018114)	insl5a (ENSTNIG00000000230)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Perciformes	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT01030000236834	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Lumpfish	MODERN SPECIES	19	gtpbp3 (ENSCLMG00005021603)	plvapb (ENSCLMG00005021599)	babam1 (ENSCLMG00005021598)	nr2f6b (ENSCLMG00005021597)	ENSCLMG00005021593	csnk1g2b (ENSCLMG00005021570)	zgc:101100 (ENSCLMG00005021566)	mknk2b (ENSCLMG00005021498)	mob3a (ENSCLMG00005021491)	zap70 (ENSCLMG00005021490)	adamts10 (ENSCLMG00005021484)	myo1f (ENSCLMG00005020157)	acer1 (ENSCLMG00005020128) #19	mllt1b (ENSCLMG00005020106) #20	acsbg2 (ENSCLMG00005019660) #21	rfx2 (ENSCLMG00005019633) #22	FCHO1 (ENSCLMG00005019606)	ENSCLMG00005019605	tprb (ENSCLMG00005018057)	pdcb (ENSCLMG00005018023)	ptgs2b (ENSCLMG00005017642)	PLA2G4A (ENSCLMG00005016400)	arpc5b (ENSCLMG00005016384)	ENSCLMG00005016382	ENSCLMG00005016379	ivns1abpa (ENSCLMG00005016228)	ENSCLMG00005016212	anos1b (ENSCLMG00005016185)	senp5 (ENSCLMG00005016182)	PDE4B (ENSCLMG00005015973)	SGIP1 (ENSCLMG00005015970)
Stickleback	MODERN SPECIES	8	ENSGACG00000007775	ENSGACG00000007771	nr2f6b (ENSGACG00000007766)	ENSGACG00000007760	csnk1g2b (ENSGACG00000007733)	zgc:101100 (ENSGACG00000007726)	rexo1 (ENSGACG00000007701)	mknk2b (ENSGACG00000007681)	mob3a (ENSGACG00000007678)	zap70 (ENSGACG00000007669)	adamts10 (ENSGACG00000007650)	myo1f (ENSGACG00000007641)	acer1 (ENSGACG00000007629) #19	mllt1b (ENSGACG00000007614) #20	acsbg2 (ENSGACG00000007559) #21	rfx2 (ENSGACG00000007541) #22	FCHO1 (ENSGACG00000007515)	ENSGACG00000007505	ENSGACG00000007504	ENSGACG00000007501	tprb (ENSGACG00000007456)	pdcb (ENSGACG00000007435)	ptgs2b (ENSGACG00000007384)	PLA2G4A (ENSGACG00000007373)	arpc5b (ENSGACG00000007368)	ENSGACG00000007306	ENSGACG00000007309	ivns1abpa (ENSGACG00000007288)	anos1b (ENSGACG00000007278)	senp5 (ENSGACG00000007271)	ENSGACG00000007270
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Channel bull blenny	MODERN SPECIES	18	nr2f6b (ENSCGOG00000008920)	ENSCGOG00000008912	MFSD12 (ENSCGOG00000008768)	csnk1g2b (ENSCGOG00000008441)	zgc:101100 (ENSCGOG00000008424)	rexo1 (ENSCGOG00000008413)	mknk2b (ENSCGOG00000007786)	mob3a (ENSCGOG00000007722)	zap70 (ENSCGOG00000007274)	adamts10 (ENSCGOG00000006985)	myo1f (ENSCGOG00000004581)	acer1 (ENSCGOG00000004452) #19	ENSCGOG00000004444 #20	mllt1b (ENSCGOG00000004407) #20	acsbg2 (ENSCGOG00000003443) #21	rfx2 (ENSCGOG00000003384) #22	ENSCGOG00000003365	ENSCGOG00000003359	tprb (ENSCGOG00000002154)	pdcb (ENSCGOG00000002058)	ptgs2b (ENSCGOG00000001550)	PLA2G4A (ENSCGOG00000001045)	ENSCGOG00000001012	PLA2G4A (ENSCGOG00000000724)	ARPC5 (ENSCGOG00000000592)	ENSCGOG00000000542	ivns1abpa (ENSCGOG00000000383)	ENSCGOG00000000343	anos1b (ENSCGOG00000000337)	ENSCGOG00000000331	ENSCGOG00000000325
Pike perch	MODERN SPECIES	286																rfx2 (ENSSLUG00000019474) #22	ENSSLUG00000019639	ENSSLUG00000019650	prg4b (ENSSLUG00000019673)	tprb (ENSSLUG00000019733)	pdcb (ENSSLUG00000020147)	ptgs2b (ENSSLUG00000020180)	PLA2G4A (ENSSLUG00000021173)	arpc5b (ENSSLUG00000021979)	ENSSLUG00000021987	ENSSLUG00000021997	ivns1abpa (ENSSLUG00000022023)	anos1b (ENSSLUG00000022094)	ENSSLUG00000022107
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865.j	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865.j	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
European seabass	MODERN SPECIES	17	ENSDLAG00005015552	nr2f6b (ENSDLAG00005026367)	ENSDLAG00005015533	ENSDLAG00005015358	csnk1g2b (ENSDLAG00005014417)	zgc:101100 (ENSDLAG00005014377)	rexo1 (ENSDLAG00005014331)	mknk2b (ENSDLAG00005013012)	mob3a (ENSDLAG00005032124)	zap70 (ENSDLAG00005012726)	adamts10 (ENSDLAG00005012300)	myo1f (ENSDLAG00005008494)	acer1 (ENSDLAG00005030989) #19	MLLT1 (ENSDLAG00005008336) #20	acsbg2 (ENSDLAG00005006826) #21	rfx2 (ENSDLAG00005006480) #22	ENSDLAG00005025925	prg4b (ENSDLAG00005025912)	tprb (ENSDLAG00005025812)	pdcb (ENSDLAG00005025788)	ptgs2b (ENSDLAG00005025759)	PLA2G4A (ENSDLAG00005025706)	arpc5b (ENSDLAG00005033907)	HMCN1 (ENSDLAG00005028325)	ivns1abpa (ENSDLAG00005025680)	ENSDLAG00005025676	ENSDLAG00005025675	ENSDLAG00005025673	PDE4B (ENSDLAG00005025655)	ENSDLAG00005025650	ENSDLAG00005025643
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005015692	nr2f6b (ENSLCRG00005015693)	ENSLCRG00005015694	MFSD12 (ENSLCRG00005015698)	csnk1g2b (ENSLCRG00005015707)	zgc:101100 (ENSLCRG00005015940)	rexo1 (ENSLCRG00005015942)	mknk2b (ENSLCRG00005015951)	mob3a (ENSLCRG00005016108)	zap70 (ENSLCRG00005016109)	adamts10 (ENSLCRG00005016121)	myo1f (ENSLCRG00005016190)	acer1 (ENSLCRG00005019453) #19	mllt1b (ENSLCRG00005019454) #20	acsbg2 (ENSLCRG00005019457) #21	rfx2 (ENSLCRG00005019466) #22	ENSLCRG00005019531	prg4b (ENSLCRG00005019540)	tprb (ENSLCRG00005019552)	pdcb (ENSLCRG00005019636)	ptgs2b (ENSLCRG00005019646)	pla2g4ab (ENSLCRG00005020242)	ENSLCRG00005020756	arpc5b (ENSLCRG00005020758)	ivns1abpa (ENSLCRG00005000863)	ENSLCRG00005000892	anos1b (ENSLCRG00005000904)	ENSLCRG00005000911	PDE4B (ENSLCRG00005000943)	SGIP1 (ENSLCRG00005001965)	insl5a (ENSLCRG00005002006)
Gilthead seabream	MODERN SPECIES	2	nr2f6b (ENSSAUG00010022608)	ENSSAUG00010022603	MFSD12 (ENSSAUG00010022566)	csnk1g2b (ENSSAUG00010022274)	zgc:101100 (ENSSAUG00010022271)	rexo1 (ENSSAUG00010022269)	mknk2b (ENSSAUG00010021405)	mob3a (ENSSAUG00010021381)	zap70 (ENSSAUG00010021380)	adamts10 (ENSSAUG00010021363)	myo1f (ENSSAUG00010017795)	acer1 (ENSSAUG00010017745) #19	ENSSAUG00010017744 #20	mllt1b (ENSSAUG00010017742) #20	acsbg2 (ENSSAUG00010016271) #21	rfx2 (ENSSAUG00010016250) #22	ENSSAUG00010016090	prg4b (ENSSAUG00010016066)	tprb (ENSSAUG00010014516)	pdcb (ENSSAUG00010014430)	ptgs2b (ENSSAUG00010014303)	PLA2G4A (ENSSAUG00010014156)	arpc5b (ENSSAUG00010014121)	HMCN1 (ENSSAUG00010013809)	ivns1abpa (ENSSAUG00010013758)	ENSSAUG00010013754	anos1b (ENSSAUG00010013743)	ENSSAUG00010013740	PDE4B (ENSSAUG00010013697)	SGIP1 (ENSSAUG00010012331)	insl5a (ENSSAUG00010012304)
Ballan wrasse	MODERN SPECIES	13	babam1 (ENSLBEG00000027062)	ENSLBEG00000027045	nr2f6b (ENSLBEG00000027027)	ENSLBEG00000027011	MFSD12 (ENSLBEG00000026982)	csnk1g2b (ENSLBEG00000026928)	zgc:101100 (ENSLBEG00000026906)	rexo1 (ENSLBEG00000026888)	mknk2b (ENSLBEG00000026872)	mob3a (ENSLBEG00000026856)	zap70 (ENSLBEG00000026844)	adamts10 (ENSLBEG00000026815)	myo1f (ENSLBEG00000026776)	mllt1b (ENSLBEG00000026732) #20	acsbg2 (ENSLBEG00000026691) #21	rfx2 (ENSLBEG00000026595) #22	ENSLBEG00000026450	ENSLBEG00000026392	tprb (ENSLBEG00000026334)	pdcb (ENSLBEG00000026303)	ptgs2b (ENSLBEG00000026283)	PLA2G4A (ENSLBEG00000026233)	arpc5b (ENSLBEG00000026190)	ENSLBEG00000026051	ENSLBEG00000025980	ENSLBEG00000025955	ENSLBEG00000025872	naprt (ENSLBEG00000025810)	si:ch1073-287p18.1 (ENSLBEG00000025791)	si:ch211-191a24.4 (ENSLBEG00000025783)	ENSLBEG00000025765
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00390000010922
Clown anemonefish	MODERN SPECIES	2542															acsbg2 (ENSAOCG00000018676) #21	rfx2 (ENSAOCG00000018851) #22	FCHO1 (ENSAOCG00000018946)	prg4b (ENSAOCG00000019016)	tprb (ENSAOCG00000019192)	pdcb (ENSAOCG00000019264)	ENSAOCG00000019286
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000007543	nr2f6b (ENSAPEG00000007564)	ENSAPEG00000007589	MFSD12 (ENSAPEG00000007604)	csnk1g2b (ENSAPEG00000007658)	zgc:101100 (ENSAPEG00000007705)	rexo1 (ENSAPEG00000007726)	mknk2b (ENSAPEG00000007745)	mob3a (ENSAPEG00000007800)	zap70 (ENSAPEG00000007827)	adamts10 (ENSAPEG00000007894)	myo1f (ENSAPEG00000007993)	acer1 (ENSAPEG00000008099) #19	mllt1b (ENSAPEG00000008132) #20	acsbg2 (ENSAPEG00000008182) #21	rfx2 (ENSAPEG00000008251) #22	FCHO1 (ENSAPEG00000008365)	prg4b (ENSAPEG00000008449)	tprb (ENSAPEG00000008500)	pdcb (ENSAPEG00000008842)	ptgs2b (ENSAPEG00000008879)	PLA2G4A (ENSAPEG00000008928)	arpc5b (ENSAPEG00000009009)	ENSAPEG00000009040	ENSAPEG00000009271	ENSAPEG00000009302	ENSAPEG00000009327	ENSAPEG00000009340	ENSAPEG00000009363	ENSAPEG00000009439	ivns1abpa (ENSAPEG00000009551)
Spiny chromis	MODERN SPECIES	1023																rfx2 (ENSAPOG00000018195) #22	ENSAPOG00000018087	prg4b (ENSAPOG00000018063)	tprb (ENSAPOG00000018046)	pdcb (ENSAPOG00000017847)	ptgs2b (ENSAPOG00000017821)	PLA2G4A (ENSAPOG00000017765)	arpc5b (ENSAPOG00000017680)	arpc5b (ENSAPOG00000017663)	ENSAPOG00000017655	ENSAPOG00000017609	ENSAPOG00000017577	ENSAPOG00000017440	ENSAPOG00000017410
Bicolor damselfish	MODERN SPECIES	1283															acsbg2 (ENSSPAG00000015911) #21	rfx2 (ENSSPAG00000015709) #22	FCHO1 (ENSSPAG00000015668)	prg4b (ENSSPAG00000015652)	tprb (ENSSPAG00000015568)	pdcb (ENSSPAG00000015540)	ptgs2b (ENSSPAG00000015504)	PLA2G4A (ENSSPAG00000015452)	arpc5b (ENSSPAG00000015442)
Cichlidae	ANCESTRAL SPECIES	45	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1099	babam1 (ENSMZEG00005018842)	ENSMZEG00005018847	nr2f6b (ENSMZEG00005018857)	ENSMZEG00005018869	csnk1g2b (ENSMZEG00005018885)	zgc:101100 (ENSMZEG00005018901)	rexo1 (ENSMZEG00005018904)	mknk2b (ENSMZEG00005018927)	mob3a (ENSMZEG00005018933)	zap70 (ENSMZEG00005018944)	adamts10 (ENSMZEG00005018969)	myo1f (ENSMZEG00005018998)	acer1 (ENSMZEG00005019030) #19	mllt1b (ENSMZEG00005019042) #20	acsbg2 (ENSMZEG00005019050) #21	rfx2 (ENSMZEG00005019062) #22	FCHO1 (ENSMZEG00005019101)	tmem178bb (ENSMZEG00005019117)	ENSMZEG00005019123	mkrn1 (ENSMZEG00005019125)	TMEM121B (ENSMZEG00005019131)	ENSMZEG00005019133	arhgef39 (ENSMZEG00005019139)	lmo3 (ENSMZEG00005019145)	dera (ENSMZEG00005019151)	msrb3 (ENSMZEG00005019159)	lemd3 (ENSMZEG00005019170)	tmbim4 (ENSMZEG00005019174)	ENSMZEG00005019180	b2m (ENSMZEG00005019181)	hspa14 (ENSMZEG00005019189)
Zebra mbuna	MODERN SPECIES	1099	babam1 (ENSMZEG00005018842)	plvapb (ENSMZEG00005018830)	gtpbp3 (ENSMZEG00005018819)	ANO8 (ENSMZEG00005018795)	dda1 (ENSMZEG00005018782)	ABHD8 (ENSMZEG00005018778)	ENSMZEG00005018770	nek7 (ENSMZEG00005018755)	lhx9 (ENSMZEG00005018750)	si:dkey-121a9.3 (ENSMZEG00005018743)	DENND1B (ENSMZEG00005018728)	crb1 (ENSMZEG00005018706)	axdnd1 (ENSMZEG00005018697)	nphs2 (ENSMZEG00005018686)	ENSMZEG00005018676	rfx2 (ENSMZEG00005018668) #22	FCHO1 (ENSMZEG00005018653)	prg4b (ENSMZEG00005018647)	tprb (ENSMZEG00005018610)	pdcb (ENSMZEG00005018588)	ENSMZEG00005018582	ptgs2b (ENSMZEG00005018575)	PLA2G4A (ENSMZEG00005018562)	arpc5b (ENSMZEG00005018556)	HMCN1 (ENSMZEG00005018519)	ivns1abpa (ENSMZEG00005018495)	ENSMZEG00005018489	anos1b (ENSMZEG00005018474)	ENSMZEG00005018468	PDE4B (ENSMZEG00005018432)	SGIP1 (ENSMZEG00005018409)
Eastern happy	MODERN SPECIES	8	babam1 (ENSACLG00000011992)	ENSACLG00000011920	nr2f6b (ENSACLG00000011885)	ENSACLG00000011854	csnk1g2b (ENSACLG00000011754)	zgc:101100 (ENSACLG00000011741)	rexo1 (ENSACLG00000011724)	mknk2b (ENSACLG00000011252)	mob3a (ENSACLG00000011244)	zap70 (ENSACLG00000011232)	adamts10 (ENSACLG00000011180)	myo1f (ENSACLG00000011109)	acer1 (ENSACLG00000011094) #19	mllt1b (ENSACLG00000011027) #20	acsbg2 (ENSACLG00000010950) #21	rfx2 (ENSACLG00000010807) #22	ENSACLG00000010711	prg4b (ENSACLG00000010173)	tprb (ENSACLG00000010024)	pdcb (ENSACLG00000009989)	ptgs2b (ENSACLG00000009977)	PLA2G4A (ENSACLG00000009930)	arpc5b (ENSACLG00000009921)	ENSACLG00000009912	ENSACLG00000009906	ENSACLG00000009899	ENSACLG00000009802	ENSACLG00000009795	ivns1abpa (ENSACLG00000009768)	ENSACLG00000009742	anos1b (ENSACLG00000009733)
P. nyererei	MODERN SPECIES	345	plvapb (ENSPNYG00000014001)	babam1 (ENSPNYG00000013981)	nr2f6b (ENSPNYG00000013961)	ENSPNYG00000013945	csnk1g2b (ENSPNYG00000013921)	zgc:101100 (ENSPNYG00000013900)	rexo1 (ENSPNYG00000013876)	mknk2b (ENSPNYG00000013854)	mob3a (ENSPNYG00000013834)	zap70 (ENSPNYG00000013811)	adamts10 (ENSPNYG00000013776)	myo1f (ENSPNYG00000013722)	acer1 (ENSPNYG00000013699) #19	mllt1b (ENSPNYG00000013657) #20	acsbg2 (ENSPNYG00000013626) #21	rfx2 (ENSPNYG00000013594) #22	ENSPNYG00000013560	prg4b (ENSPNYG00000013505)	tprb (ENSPNYG00000013396)	pdcb (ENSPNYG00000013331)	ptgs2b (ENSPNYG00000013302)	PLA2G4A (ENSPNYG00000013270)	arpc5b (ENSPNYG00000013248)	HMCN1 (ENSPNYG00000013056)	ivns1abpa (ENSPNYG00000012969)	ENSPNYG00000012934	anos1b (ENSPNYG00000012885)	ENSPNYG00000012860	PDE4B (ENSPNYG00000012821)	SGIP1 (ENSPNYG00000012738)	ENSPNYG00000012710
Burton s mouthbrooder	MODERN SPECIES	518	babam1 (ENSHBUG00000004758)	ENSHBUG00000004794	nr2f6b (ENSHBUG00000004816)	ENSHBUG00000004827	csnk1g2b (ENSHBUG00000004921)	zgc:101100 (ENSHBUG00000004950)	rexo1 (ENSHBUG00000004974)	mknk2b (ENSHBUG00000005042)	mob3a (ENSHBUG00000005063)	zap70 (ENSHBUG00000005129)	adamts10 (ENSHBUG00000005198)	myo1f (ENSHBUG00000005253)	acer1 (ENSHBUG00000005277) #19	mllt1b (ENSHBUG00000005304) #20	acsbg2 (ENSHBUG00000005339) #21	rfx2 (ENSHBUG00000005376) #22	FCHO1 (ENSHBUG00000005430)	prg4b (ENSHBUG00000005490)	tprb (ENSHBUG00000005601)	pdcb (ENSHBUG00000005616)	ptgs2b (ENSHBUG00000005649)	PLA2G4A (ENSHBUG00000005713)	arpc5b (ENSHBUG00000005737)	HMCN1 (ENSHBUG00000006059)	ivns1abpa (ENSHBUG00000006167)	ENSHBUG00000006188
Lyretail cichlid	MODERN SPECIES	356	babam1 (ENSNBRG00000021583)	nr2f6b (ENSNBRG00000021569)	ENSNBRG00000021545	csnk1g2b (ENSNBRG00000021517)	zgc:101100 (ENSNBRG00000021499)	rexo1 (ENSNBRG00000021386)	mknk2b (ENSNBRG00000021349)	mob3a (ENSNBRG00000021337)	ENSNBRG00000021323	adamts10 (ENSNBRG00000021277)	ENSNBRG00000021265	ENSNBRG00000021253	acer1 (ENSNBRG00000021234) #19	mllt1b (ENSNBRG00000021117) #20	acsbg2 (ENSNBRG00000021054) #21	rfx2 (ENSNBRG00000021013) #22	FCHO1 (ENSNBRG00000020963)	ENSNBRG00000020943	tprb (ENSNBRG00000020863)	pdcb (ENSNBRG00000020850)	ptgs2b (ENSNBRG00000020828)	PLA2G4A (ENSNBRG00000020789)	ARPC5 (ENSNBRG00000020769)	HMCN1 (ENSNBRG00000020568)	ivns1abpa (ENSNBRG00000020511)	ENSNBRG00000020498	ENSNBRG00000020484	anos1b (ENSNBRG00000020458)	ENSNBRG00000020408	SGIP1 (ENSNBRG00000020326)	pars2 (ENSNBRG00000020304)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000042653	nr2f6b (ENSONIG00000036494)	ENSONIG00000010100	ENSONIG00000038271	csnk1g2b (ENSONIG00000010093)	zgc:101100 (ENSONIG00000033587)	rexo1 (ENSONIG00000010090)	mknk2b (ENSONIG00000010086)	mob3a (ENSONIG00000010084)	zap70 (ENSONIG00000010079)	adamts10 (ENSONIG00000010072)	myo1f (ENSONIG00000010058)	acer1 (ENSONIG00000010055) #19	mllt1b (ENSONIG00000010050) #20	acsbg2 (ENSONIG00000010044) #21	rfx2 (ENSONIG00000010042) #22	ENSONIG00000010035	prg4b (ENSONIG00000010033)	tprb (ENSONIG00000010025)	pdc (ENSONIG00000010023)	ptgs2b (ENSONIG00000010015)	PLA2G4A (ENSONIG00000010006)	arpc5b (ENSONIG00000030147)	ENSONIG00000009997	ENSONIG00000009994	ivns1abpa (ENSONIG00000009995)	anos1b (ENSONIG00000009992)	ENSONIG00000032942	ENSONIG00000042939	PDE4B (ENSONIG00000009986)	ENSONIG00000034880
Midas cichlid	MODERN SPECIES	254	babam1 (ENSACIG00000012392)	nr2f6b (ENSACIG00000012415)	ENSACIG00000012433	csnk1g2b (ENSACIG00000012453)	zgc:101100 (ENSACIG00000012484)	rexo1 (ENSACIG00000012498)	mknk2b (ENSACIG00000012576)	mob3a (ENSACIG00000012605)	zap70 (ENSACIG00000012622)	adamts10 (ENSACIG00000012758)	ENSACIG00000012814	myo1f (ENSACIG00000012826)	acer1 (ENSACIG00000012878) #19	ENSACIG00000012904 #20	acsbg2 (ENSACIG00000012921) #21	rfx2 (ENSACIG00000012986) #22	FCHO1 (ENSACIG00000013022)	ENSACIG00000013084	tprb (ENSACIG00000013110)	pdcb (ENSACIG00000013188)	ENSACIG00000013198	ptgs2b (ENSACIG00000013210)	PLA2G4A (ENSACIG00000013251)	arpc5b (ENSACIG00000013289)	ENSACIG00000013303	ENSACIG00000013332	ENSACIG00000013343	ENSACIG00000013355	ENSACIG00000013366	ENSACIG00000013373	ivns1abpa (ENSACIG00000013417)
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Mangrove rivulus	MODERN SPECIES	53	babam1 (ENSKMAG00000014461)	ENSKMAG00000014410	nr2f6b (ENSKMAG00000014385)	ENSKMAG00000014356	csnk1g2b (ENSKMAG00000014295)	zgc:101100 (ENSKMAG00000014275)	rexo1 (ENSKMAG00000014245)	mknk2b (ENSKMAG00000014182)	mob3a (ENSKMAG00000014145)	zap70 (ENSKMAG00000014044)	adamts10 (ENSKMAG00000013955)	myo1f (ENSKMAG00000013798)	acer1 (ENSKMAG00000013722) #19	ENSKMAG00000013714 #20	acsbg2 (ENSKMAG00000013639) #21	rfx2 (ENSKMAG00000013515) #22	FCHO1 (ENSKMAG00000013432)	ENSKMAG00000013414	ENSKMAG00000013392	tprb (ENSKMAG00000013125)	pdcb (ENSKMAG00000013034)	ptgs2b (ENSKMAG00000012996)	PLA2G4A (ENSKMAG00000012929)	arpc5b (ENSKMAG00000012902)	HMCN1 (ENSKMAG00000012666)	ivns1abpa (ENSKMAG00000012562)	ENSKMAG00000012533	anos1b (ENSKMAG00000012498)	ENSKMAG00000012462	PDE4B (ENSKMAG00000012376)	SGIP1 (ENSKMAG00000012270)
Turquoise killifish	MODERN SPECIES	1626	nr2f6b (ENSNFUG00015017280)	Nfu_g_1_002525 (ENSNFUG00015017275)	ENSNFUG00015017271	csnk1g2b (ENSNFUG00015017238)	zgc:101100 (ENSNFUG00015017225)	rexo1 (ENSNFUG00015017144)	MKNK2 (ENSNFUG00015016990)	MOB3A (ENSNFUG00015016965)	zap70 (ENSNFUG00015016885)	adamts10 (ENSNFUG00015016603)	myo1f (ENSNFUG00015016402)	acer1 (ENSNFUG00015016342) #19	ENSNFUG00015016333	mllt1b (ENSNFUG00015016328) #20	acsbg2 (ENSNFUG00015013614) #21	rfx2 (ENSNFUG00015010944) #22	FCHO1 (ENSNFUG00015010720)	prg4b (ENSNFUG00015010713)	tprb (ENSNFUG00015008196)	PDC (ENSNFUG00015008068)	ptgs2b (ENSNFUG00015007867)	PLA2G4A (ENSNFUG00015007513)	arpc5b (ENSNFUG00015007464)	ENSNFUG00015007393	ENSNFUG00015007384	ivns1abpa (ENSNFUG00015007376)	ENSNFUG00015007367	KAL1B (ENSNFUG00015007356)	senp5 (ENSNFUG00015007348)	PDE4B (ENSNFUG00015007078)	SGIP1 (ENSNFUG00015007046)
Cyprinodontoidei	ANCESTRAL SPECIES	29	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a
Poecilia	ANCESTRAL SPECIES	1	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a
NAME_6	ANCESTRAL SPECIES	59	ENSGT00390000006166.b	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT00940000158404	ENSGT00940000158870.v.a	ENSGT00940000158870.v.b	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614.od	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00390000018600
Sailfin molly	MODERN SPECIES	1131															acsbg2 (ENSPLAG00000022758) #21	rfx2 (ENSPLAG00000022773) #22	ENSPLAG00000022800	FCHO1 (ENSPLAG00000022815)	ENSPLAG00000022838	ENSPLAG00000022864	tprb (ENSPLAG00000022880)
Amazon molly	MODERN SPECIES	290			csnk1g2b (ENSPFOG00000015590)	zgc:101100 (ENSPFOG00000015582)	rexo1 (ENSPFOG00000015539)	mknk2b (ENSPFOG00000015486)	zap70 (ENSPFOG00000015396)	ENSPFOG00000023927	mob3a (ENSPFOG00000015463)	adamts10 (ENSPFOG00000015150)	myo1f (ENSPFOG00000015087)	myo1f (ENSPFOG00000014729)	acer1 (ENSPFOG00000022414) #19	mllt1b (ENSPFOG00000014628) #20	acsbg2 (ENSPFOG00000014451) #21	rfx2 (ENSPFOG00000014343) #22	FCHO1 (ENSPFOG00000014151)	prg4b (ENSPFOG00000014119)	tprb (ENSPFOG00000013919)	pdcb (ENSPFOG00000013870)	ptgs2b (ENSPFOG00000013808)	arpc5b (ENSPFOG00000013539)	PLA2G4A (ENSPFOG00000013566)	arpc5b (ENSPFOG00000013523)	ENSPFOG00000011299	ENSPFOG00000011182	ivns1abpa (ENSPFOG00000011017)	ENSPFOG00000010988	anos1b (ENSPFOG00000010826)	ENSPFOG00000024496	ENSPFOG00000010814
Guppy	MODERN SPECIES	460	gspt1l (ENSPREG00000008023)	ENSPREG00000008085	pdxdc1 (ENSPREG00000008127)	ENSPREG00000008225	csnk1g2b (ENSPREG00000008247)	zgc:101100 (ENSPREG00000008297)	rexo1 (ENSPREG00000008314)	mknk2b (ENSPREG00000008356)	mob3a (ENSPREG00000008403)	zap70 (ENSPREG00000008419)	adamts10 (ENSPREG00000008473)	myo1f (ENSPREG00000008558)	acer1 (ENSPREG00000008689) #19	mllt1b (ENSPREG00000008720) #20	acsbg2 (ENSPREG00000008750) #21	rfx2 (ENSPREG00000008815) #22	FCHO1 (ENSPREG00000008859)	ENSPREG00000008901	tprb (ENSPREG00000008938)	pdcb (ENSPREG00000009031)	ptgs2b (ENSPREG00000009050)	PLA2G4A (ENSPREG00000009098)	arpc5b (ENSPREG00000009179)	HMCN1 (ENSPREG00000009231)	ENSPREG00000009457	ivns1abpa (ENSPREG00000009477)	anos1b (ENSPREG00000009555)	senp5 (ENSPREG00000009593)	PDE4B (ENSPREG00000009655)	SGIP1 (ENSPREG00000009713)	ENSPREG00000009783
Platyfish	MODERN SPECIES	23	babam1 (ENSXMAG00000002383)	ENSXMAG00000002380	nr2f6b (ENSXMAG00000029958)	ENSXMAG00000002711	csnk1g2b (ENSXMAG00000025893)	zgc:101100 (ENSXMAG00000002688)	rexo1 (ENSXMAG00000002681)	mknk2b (ENSXMAG00000026129)	mob3a (ENSXMAG00000002664)	zap70 (ENSXMAG00000002656)	adamts10 (ENSXMAG00000002633)	myo1f (ENSXMAG00000002577)	acer1 (ENSXMAG00000002576) #19	mllt1b (ENSXMAG00000002564) #20	acsbg2 (ENSXMAG00000002550) #21	rfx2 (ENSXMAG00000002530) #22	FCHO1 (ENSXMAG00000002509)	prg4b (ENSXMAG00000028103)	tprb (ENSXMAG00000002445)	pdcb (ENSXMAG00000002444)	ptgs2b (ENSXMAG00000002418)	PLA2G4A (ENSXMAG00000002397)	arpc5b (ENSXMAG00000002393)	HMCN1 (ENSXMAG00000002326)	ENSXMAG00000002325	ivns1abpa (ENSXMAG00000002313)	ENSXMAG00000023472	ENSXMAG00000002309	senp5 (ENSXMAG00000002306)	PDE4B (ENSXMAG00000023428)	SGIP1 (ENSXMAG00000026491)
NAME_4	ANCESTRAL SPECIES	134	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489.l	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00390000010922
Mummichog	MODERN SPECIES	2467	ENSFHEG00000022073	ENSFHEG00000022062	nr2f6b (ENSFHEG00000022056)	ENSFHEG00000022048	csnk1g2b (ENSFHEG00000000541)	zgc:101100 (ENSFHEG00000022002)	rexo1 (ENSFHEG00000021991)	mknk2b (ENSFHEG00000021979)	mob3a (ENSFHEG00000000539)	zap70 (ENSFHEG00000021914)	adamts10 (ENSFHEG00000021906)	myo1f (ENSFHEG00000021819)	acer1 (ENSFHEG00000021681) #19	mllt1b (ENSFHEG00000021665) #20	acsbg2 (ENSFHEG00000021653) #21	rfx2 (ENSFHEG00000021635) #22	ENSFHEG00000021474	ENSFHEG00000021442	ENSFHEG00000021428	ENSFHEG00000021403	ENSFHEG00000021379
Sheepshead minnow	MODERN SPECIES	471								ENSCVAG00000017400	xbp1 (ENSCVAG00000017394)	ZNRF3 (ENSCVAG00000017386)	coq5 (ENSCVAG00000017359)	kremen1 (ENSCVAG00000017335)	mllt1b (ENSCVAG00000017327) #20	ENSCVAG00000017312	acsbg2 (ENSCVAG00000000442) #21	rfx2 (ENSCVAG00000017283) #22	FCHO1 (ENSCVAG00000017099)	ENSCVAG00000016851	tprb (ENSCVAG00000016813)	ENSCVAG00000016658	ENSCVAG00000000419	ENSCVAG00000016617	stx6 (ENSCVAG00000016575)	wdr18 (ENSCVAG00000016543)	GRIN3B (ENSCVAG00000016464)	TMEM259 (ENSCVAG00000016103)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Japanese Medaka HdrR	MODERN SPECIES	18	babam1 (ENSORLG00000008898)	ENSORLG00000028295	nr2f6b (ENSORLG00000008911)	ENSORLG00000008937	csnk1g2b (ENSORLG00000008960)	zgc:101100 (ENSORLG00000008964)	rexo1 (ENSORLG00000008986)	mknk2b (ENSORLG00000009024)	mob3a (ENSORLG00000009055)	zap70 (ENSORLG00000009099)	adamts10 (ENSORLG00000009150)	myo1f (ENSORLG00000009185)	acer1 (ENSORLG00000009204) #19	mllt1b (ENSORLG00000009229) #20	acsbg2 (ENSORLG00000009239) #21	rfx2 (ENSORLG00000009257) #22	FCHO1 (ENSORLG00000009305)	prg4b (ENSORLG00000009323)	tprb (ENSORLG00000009423)	pdcb (ENSORLG00000009441)	ptgs2b (ENSORLG00000009468)	PLA2G4A (ENSORLG00000009481)	arpc5b (ENSORLG00000009498)	HMCN1 (ENSORLG00000009600)	ENSORLG00000024845	ivns1abpa (ENSORLG00000009672)	ENSORLG00000009682	anos1b (ENSORLG00000009706)	ENSORLG00000026071	PDE4B (ENSORLG00000009796)	ENSORLG00000024429
Chinese medaka	MODERN SPECIES	41	ENSOSIG00000013794	ENSOSIG00000013796	nr2f6b (ENSOSIG00000013800)	ENSOSIG00000013805	csnk1g2b (ENSOSIG00000013814)	zgc:101100 (ENSOSIG00000013906)	rexo1 (ENSOSIG00000013908)	mknk2b (ENSOSIG00000013940)	mob3a (ENSOSIG00000014331)	zap70 (ENSOSIG00000014334)	adamts10 (ENSOSIG00000014435)	myo1f (ENSOSIG00000014730)	acer1 (ENSOSIG00000014778) #19	mllt1b (ENSOSIG00000014781) #20	acsbg2 (ENSOSIG00000014793) #21	rfx2 (ENSOSIG00000015352) #22	FCHO1 (ENSOSIG00000017467)	ENSOSIG00000017491	tprb (ENSOSIG00000017524)	ptgs2b (ENSOSIG00000017867)	PLA2G4A (ENSOSIG00000019110)	arpc5b (ENSOSIG00000019230)	ivns1abpa (ENSOSIG00000019312)	ENSOSIG00000019340	anos1b (ENSOSIG00000019348)	ENSOSIG00000019352	PDE4B (ENSOSIG00000019372)	ENSOSIG00000019413	SGIP1 (ENSOSIG00000019416)	ENSOSIG00000019417	pars2 (ENSOSIG00000019420)
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Indian medaka	MODERN SPECIES	13	plvapb (ENSOMEG00000005004)	babam1 (ENSOMEG00000005036)	nr2f6b (ENSOMEG00000005056)	ENSOMEG00000005095	csnk1g2b (ENSOMEG00000005117)	zgc:101100 (ENSOMEG00000005147)	rexo1 (ENSOMEG00000005167)	mknk2b (ENSOMEG00000005219)	mob3a (ENSOMEG00000005232)	zap70 (ENSOMEG00000005300)	adamts10 (ENSOMEG00000005389)	myo1f (ENSOMEG00000005478)	acer1 (ENSOMEG00000005504) #19	mllt1b (ENSOMEG00000005537) #20	acsbg2 (ENSOMEG00000005657) #21	rfx2 (ENSOMEG00000005761) #22	FCHO1 (ENSOMEG00000005835)	ENSOMEG00000005844	ENSOMEG00000005855	tprb (ENSOMEG00000006153)	pdcb (ENSOMEG00000006198)	ptgs2b (ENSOMEG00000006228)	PLA2G4A (ENSOMEG00000006267)	arpc5b (ENSOMEG00000006288)	ENSOMEG00000006515	ivns1abpa (ENSOMEG00000006581)	ENSOMEG00000006607	ENSOMEG00000006637	senp5 (ENSOMEG00000006660)	PDE4B (ENSOMEG00000006755)	SGIP1 (ENSOMEG00000007046)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000017496	nr2f6b (ENSOJAG00000017503)	ENSOJAG00000017536	csnk1g2b (ENSOJAG00000017546)	zgc:101100 (ENSOJAG00000017590)	rexo1 (ENSOJAG00000017610)	mknk2b (ENSOJAG00000017715)	mob3a (ENSOJAG00000017870)	zap70 (ENSOJAG00000017897)	adamts10 (ENSOJAG00000017965)	myo1f (ENSOJAG00000018638)	acer1 (ENSOJAG00000020266) #19	MLLT1 (ENSOJAG00000020298) #20	acsbg2 (ENSOJAG00000020310) #21	ENSOJAG00000020344 #21	rfx2 (ENSOJAG00000020373) #22	FCHO1 (ENSOJAG00000020576)	ENSOJAG00000020581	ENSOJAG00000020591	prg4b (ENSOJAG00000020596)	tprb (ENSOJAG00000020700)	pdcb (ENSOJAG00000021786)	ptgs2b (ENSOJAG00000000391)	PLA2G4A (ENSOJAG00000000872)	arpc5b (ENSOJAG00000001367)	ivns1abpa (ENSOJAG00000001586)	ENSOJAG00000001623	anos1b (ENSOJAG00000001651)	senp5 (ENSOJAG00000001668)	PDE4B (ENSOJAG00000001789)	SGIP1 (ENSOJAG00000001870)
Pinecone sodierfish	MODERN SPECIES	18	babam1 (ENSMMDG00005007804)	nr2f6b (ENSMMDG00005007803)	ENSMMDG00005007802	MFSD12 (ENSMMDG00005007796)	csnk1g2b (ENSMMDG00005007699)	zgc:101100 (ENSMMDG00005007686)	rexo1 (ENSMMDG00005007680)	mknk2b (ENSMMDG00005004720)	mob3a (ENSMMDG00005004597)	zap70 (ENSMMDG00005004532)	adamts10 (ENSMMDG00005004484)	myo1f (ENSMMDG00005004445)	acer1 (ENSMMDG00005004436) #19	mllt1b (ENSMMDG00005004422) #20	acsbg2 (ENSMMDG00005001835) #21	rfx2 (ENSMMDG00005001128) #22	FCHO1 (ENSMMDG00005000756)	prg4b (ENSMMDG00005000699)	tprb (ENSMMDG00005000569)	pdcb (ENSMMDG00005000506)	ptgs2b (ENSMMDG00005000495)	PLA2G4A (ENSMMDG00005000444)	arpc5b (ENSMMDG00005000422)	ivns1abpa (ENSMMDG00005000333)	ENSMMDG00005000317	TRMT1L (ENSMMDG00005000167)	niban1a (ENSMMDG00005015756)	kifap3a (ENSMMDG00005015465)	ntmt2 (ENSMMDG00005015445)	gorab (ENSMMDG00005015441)	prrx1b (ENSMMDG00005015436)
Cod	MODERN SPECIES	3	plvapb (ENSGMOG00000000024)	ENSGMOG00000029441	babam1 (ENSGMOG00000011178)	nr2f6b (ENSGMOG00000010346)	ENSGMOG00000011166	ENSGMOG00000011153	zgc:101100 (ENSGMOG00000011149)	rexo1 (ENSGMOG00000011119)	mknk2b (ENSGMOG00000011105)	mob3a (ENSGMOG00000011100)	zap70 (ENSGMOG00000011085)	myo1f (ENSGMOG00000011050)	acer1 (ENSGMOG00000011043) #19	MLLT1 (ENSGMOG00000011021) #20	acsbg2 (ENSGMOG00000011004) #21	rfx2 (ENSGMOG00000010985) #22	ENSGMOG00000010966	prg4b (ENSGMOG00000035920)	tprb (ENSGMOG00000010899)	pdcb (ENSGMOG00000034832)	ptgs2b (ENSGMOG00000010880)	PLA2G4A (ENSGMOG00000010862)	arpc5b (ENSGMOG00000010856)	HMCN1 (ENSGMOG00000010733)	ivns1abpa (ENSGMOG00000004931)	ENSGMOG00000036754	TRMT1L (ENSGMOG00000009535)	niban1a (ENSGMOG00000009550)	kifap3a (ENSGMOG00000009568)	ntmt2 (ENSGMOG00000031238)	MAST2 (ENSGMOG00000015409)
Otomorpha	ANCESTRAL SPECIES	30	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Otophysi	ANCESTRAL SPECIES	84	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Characiphysae	ANCESTRAL SPECIES	83	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030.fd	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p	ENSGT00940000156012
Channel catfish	MODERN SPECIES	24	dohh (ENSIPUG00000013906)	fzr1 (ENSIPUG00000013919)	haus5 (ENSIPUG00000013964)	wdr13 (ENSIPUG00000014066)	si:ch211-255g12.6 (ENSIPUG00000014133)	asic1 (ENSIPUG00000014147)	gpd1a (ENSIPUG00000014222)	mknk2 (ENSIPUG00000014250)	mob3a (ENSIPUG00000014287)	Zap70 (ENSIPUG00000014308)	adamts10 (ENSIPUG00000014402)	MYO1F (ENSIPUG00000014471)	acer1 (ENSIPUG00000014707) #19	MLLT1 (ENSIPUG00000014750) #20	acsbg2 (ENSIPUG00000014771) #21	rfx2 (ENSIPUG00000014815) #22	FCHO1 (ENSIPUG00000014888)	znf692 (ENSIPUG00000014936)	ENSIPUG00000014978	trabd2b (ENSIPUG00000014990)	foxd2 (ENSIPUG00000015004)	foxe3 (ENSIPUG00000015013)	FAM78B (ENSIPUG00000015028)	slc35a3 (ENSIPUG00000015041)	notch2 (ENSIPUG00000015103)	sec22bb (ENSIPUG00000015162)	npl (ENSIPUG00000015208)	edem3 (ENSIPUG00000015278)	ENSIPUG00000015321	colgalt2b (ENSIPUG00000015337)	rgl1 (ENSIPUG00000015387)
Characiphysae_b	ANCESTRAL SPECIES	162	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404.k.a	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e
Characoidei	ANCESTRAL SPECIES	196	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404.k.a	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e
Mexicana tetra	MODERN SPECIES	21	dohh (ENSAMXG00000016418)	ENSAMXG00000031324	ENSAMXG00000016427	MFSD12 (ENSAMXG00000016435)	csnk1g2b (ENSAMXG00000016454)	zgc:101100 (ENSAMXG00000032253)	rexo1 (ENSAMXG00000016463)	mknk2b (ENSAMXG00000032889)	mob3a (ENSAMXG00000029188)	zap70 (ENSAMXG00000016477)	adamts10 (ENSAMXG00000016485)	myo1f (ENSAMXG00000016522)	acer1 (ENSAMXG00000043608) #19	MLLT1 (ENSAMXG00000016533) #20	acsbg2 (ENSAMXG00000016541) #21	rfx2 (ENSAMXG00000042518) #22	ENSAMXG00000016569	ENSAMXG00000036131	ENSAMXG00000016590	trabd2b (ENSAMXG00000016593)	foxd2 (ENSAMXG00000016595)	FAM78B (ENSAMXG00000016600)	slc35a3a (ENSAMXG00000032366)	ENSAMXG00000036885	ENSAMXG00000035566	sec22bb (ENSAMXG00000016628)	npl (ENSAMXG00000043524)	EDEM3 (ENSAMXG00000041285)	zgc:92140 (ENSAMXG00000039623)	colgalt2b (ENSAMXG00000041867)	rgl1 (ENSAMXG00000016687)
Red-bellied piranha	MODERN SPECIES	467																rfx2 (ENSPNAG00000019313) #22	FCHO1 (ENSPNAG00000019264)	ENSPNAG00000019215	ENSPNAG00000019201	trabd2b (ENSPNAG00000019195)
Electric eel	MODERN SPECIES	389	PRDM11 (ENSEEEG00000011093)	ENSEEEG00000011091	ENSEEEG00000011089	BET1L (ENSEEEG00000011087)	arpp19b (ENSEEEG00000011084)	ENSEEEG00000010493	ENSEEEG00000010463	ENSEEEG00000010461	ENSEEEG00000010459	gnb5a (ENSEEEG00000010456)	AP4E1 (ENSEEEG00000010452)	CYP19A1 (ENSEEEG00000010006)	drd4a (ENSEEEG00000009971)	deaf1 (ENSEEEG00000009969)	pgghg (ENSEEEG00000009955)	rfx2 (ENSEEEG00000009950) #22
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030.dd	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	137	ENSGT00940000165304.a	ENSGT00980000201079	ENSGT00950000182916.b.c	ENSGT00390000005318.a.a.a.b	ENSGT00940000156470.u.a.a	ENSGT00940000155505.b.c	ENSGT00940000165897.b	ENSGT00940000154587.a.b.q.b	ENSGT01050000244898.a.a.a.a.z.b	ENSGT00940000159185.e	ENSGT00940000158404.i	ENSGT00940000158870.db.b	ENSGT00730000110920.b.a.a.h #19	ENSGT00940000158800.eb.a.a.a #20	ENSGT00940000155332.A.n #21	ENSGT01050000244879.a.a.a.i #22	ENSGT00940000160489.e	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.c	ENSGT00940000165000.q.a	ENSGT00940000161645.a.c.a	ENSGT00940000162270.m.a	ENSGT00390000018059.b.a.c	ENSGT00950000182827.C.b.d	ENSGT00940000155030.dd.a.a	ENSGT00940000155030.dd.b.b	ENSGT00940000155030.dd.b.a	ENSGT00940000156349.c.f	ENSGT00530000063604.B.a	ENSGT00940000159391.d
Goldfish	MODERN SPECIES	48	dohh (ENSCARG00000038662)	ENSCARG00000038687	ENSCARG00000038726	MFSD12 (ENSCARG00000038914)	csnk1g2b (ENSCARG00000039010)	zgc:101100 (ENSCARG00000039488)	rexo1 (ENSCARG00000039496)	mknk2b (ENSCARG00000039580)	mob3a (ENSCARG00000040129)	zap70 (ENSCARG00000040197)	adamts10 (ENSCARG00000040335)	myo1f (ENSCARG00000041146)	acer1 (ENSCARG00000041422) #19	MLLT1 (ENSCARG00000041494) #20	acsbg2 (ENSCARG00000041571) #21	rfx2 (ENSCARG00000042133) #22	FCHO1 (ENSCARG00000042379)	ENSCARG00000042638	ENSCARG00000042662	trabd2b (ENSCARG00000042683)	foxd2 (ENSCARG00000042729)	foxe3 (ENSCARG00000042740)	FAM78B (ENSCARG00000042743)	slc35a3a (ENSCARG00000042752)	ENSCARG00000042768	ENSCARG00000012464	ENSCARG00000012477	sec22bb (ENSCARG00000012496)	npl (ENSCARG00000012529)	EDEM3 (ENSCARG00000012613)	ENSCARG00000014634
Cyprininae_a	ANCESTRAL SPECIES	129	ENSGT00940000163250.C.j.a	ENSGT00940000165304.a	ENSGT00950000182916.b.c	ENSGT00390000005318.a.a.a.b	ENSGT00940000156470.u.a.a	ENSGT00940000155505.b.c	ENSGT00940000165897.b	ENSGT00940000154587.a.b.q.b	ENSGT01050000244898.a.a.a.a.z.b	ENSGT00940000159185.e	ENSGT00940000158404.i	ENSGT00940000158870.db.b	ENSGT00730000110920.b.a.a.h #19	ENSGT00940000158800.eb.a.a.a #20	ENSGT00940000155332.A.n #21	ENSGT01050000244879.a.a.a.i #22	ENSGT00940000160489.e	ENSGT00940000161175.b	ENSGT00970000197265	ENSGT00940000160259.c	ENSGT00940000165000.q.a	ENSGT00940000161645.a.c.a	ENSGT00940000162270.m.a	ENSGT00390000018059.b.a.c	ENSGT00950000182827.C.b.d	ENSGT00940000155030.dd.a.a	ENSGT00940000155030.dd.b.b	ENSGT00940000155030.dd.b.a	ENSGT00940000156349.c.e	ENSGT00530000063604.B.a	ENSGT00940000159391.d
Common carp reference	MODERN SPECIES	23	ENSCCRG00000065166	ENSCCRG00000074277	ENSCCRG00000056624	ENSCCRG00000049893	csnk1g2b (ENSCCRG00000059560)	zgc:101100 (ENSCCRG00000026418)	rexo1 (ENSCCRG00000026406)	mknk2b (ENSCCRG00000066179)	mob3a (ENSCCRG00000025857)	zap70 (ENSCCRG00000082076)	adamts10 (ENSCCRG00000037413)	myo1f (ENSCCRG00000011334)	acer1 (ENSCCRG00000029755) #19	MLLT1 (ENSCCRG00000063828) #20	acsbg2 (ENSCCRG00000081737) #21	rfx2 (ENSCCRG00000002402) #22	ENSCCRG00000002338	ENSCCRG00000064057	ENSCCRG00000002312	ENSCCRG00000002328	trabd2b (ENSCCRG00000028942)	foxd2 (ENSCCRG00000073443)	foxe3 (ENSCCRG00000028948)	ENSCCRG00000054518	ENSCCRG00000062466	ENSCCRG00000061162	sec22bb (ENSCCRG00000020063)	ENSCCRG00000075033	npl (ENSCCRG00000020124)	ENSCCRG00000020158	ENSCCRG00000061153
Golden-line barbel	MODERN SPECIES	74	ENSSGRG00000015780	MFSD12 (ENSSGRG00000015748)	csnk1g2b (ENSSGRG00000015207)	zgc:101100 (ENSSGRG00000015201)	rexo1 (ENSSGRG00000015198)	mknk2b (ENSSGRG00000015100)	mob3a (ENSSGRG00000015074)	zap70 (ENSSGRG00000015071)	zap70 (ENSSGRG00000015068)	adamts10 (ENSSGRG00000014989)	myo1f (ENSSGRG00000013533)	acer1 (ENSSGRG00000013517) #19	MLLT1 (ENSSGRG00000013515) #20	acsbg2 (ENSSGRG00000013514) #21	acsbg2 (ENSSGRG00000013513) #21	rfx2 (ENSSGRG00000013451) #22	FCHO1 (ENSSGRG00000013430)	ENSSGRG00000013426	ENSSGRG00000013424	trabd2b (ENSSGRG00000013422)	foxd2 (ENSSGRG00000013421)	foxe3 (ENSSGRG00000013420)	FAM78B (ENSSGRG00000013419)	slc35a3a (ENSSGRG00000013418)	ENSSGRG00000013176	ENSSGRG00000013173	ENSSGRG00000013171	sec22bb (ENSSGRG00000013139)	npl (ENSSGRG00000013120)	EDEM3 (ENSSGRG00000011616)	zgc:92140 (ENSSGRG00000011568)
Cyprininae	ANCESTRAL SPECIES	6	ENSGT00950000183104.B.a.b.a.a.c.b	ENSGT00940000165304.b	ENSGT00950000182916.b.d	ENSGT00390000005318.a.a.a.a	ENSGT00940000156470.u.a.b	ENSGT00940000155505.b.d	ENSGT00940000165897.a	ENSGT00940000154587.a.b.q.a	ENSGT01050000244898.a.a.a.a.z.a.a	ENSGT00940000159185.f	ENSGT00940000158404.j	ENSGT00940000158870.db.a	ENSGT00730000110920.b.a.a.g #19	ENSGT00940000158800.eb.b #20	ENSGT00940000155332.A.m #21	ENSGT01050000244879.a.a.a.j #22	ENSGT00940000160489.f	ENSGT00940000160259.d	ENSGT00940000165000.q.b	ENSGT00940000161645.a.c.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.m.b	ENSGT00390000018059.b.a.d	ENSGT00950000182827.C.b.c	ENSGT00940000155030.dd.a.b	ENSGT00940000156349.c.e	ENSGT00530000063604.B.b	ENSGT00940000159391.c	ENSGT00390000014594.e.a.a.a	ENSGT01030000234558.C.p.a	ENSGT00940000156012.c
Goldfish	MODERN SPECIES	61	ENSCARG00000033334	fzr1a (ENSCARG00000033193)	ENSCARG00000033018	MFSD12 (ENSCARG00000032782)	csnk1g2b (ENSCARG00000032289)	zgc:101100 (ENSCARG00000032253)	rexo1 (ENSCARG00000032248)	mknk2b (ENSCARG00000032109)	mob3a (ENSCARG00000032057)	zap70 (ENSCARG00000031986)	adamts10 (ENSCARG00000031667)	myo1f (ENSCARG00000027233)	ENSCARG00000027107	MLLT1 (ENSCARG00000027097) #20	acsbg2 (ENSCARG00000024769) #21	rfx2 (ENSCARG00000024449) #22	ENSCARG00000024369	ENSCARG00000024345	trabd2b (ENSCARG00000024335)	foxd2 (ENSCARG00000024324)	foxe3 (ENSCARG00000024321)	FAM78B (ENSCARG00000024310)	slc35a3a (ENSCARG00000024287)	ENSCARG00000023689	sec22bb (ENSCARG00000023624)	npl (ENSCARG00000023611)	EDEM3 (ENSCARG00000023474)	zgc:92140 (ENSCARG00000023452)	colgalt2b (ENSCARG00000023367)	rgl1 (ENSCARG00000022942)	plin3 (ENSCARG00000022919)
Cyprininae_a	ANCESTRAL SPECIES	39	ENSGT00940000163250.C.j.b	ENSGT00940000165304.b	ENSGT00950000182916.b.d	ENSGT00390000005318.a.a.a.a	ENSGT00940000156470.u.a.b	ENSGT00940000155505.b.d	ENSGT00940000165897.a	ENSGT00940000154587.a.b.q.a	ENSGT01050000244898.a.a.a.a.z.a.a	ENSGT00940000159185.f	ENSGT00940000158404.j	ENSGT00940000158870.db.a	ENSGT00730000110920.b.a.a.g #19	ENSGT00940000158800.eb.b #20	ENSGT00940000155332.A.m #21	ENSGT01050000244879.a.a.a.j #22	ENSGT00940000160489.f	ENSGT00940000161175.a	ENSGT00940000160259.d	ENSGT00940000165000.q.b	ENSGT00390000018059.b.a.d	ENSGT00950000182827.C.b.c	ENSGT00940000155030.dd.a.b	ENSGT00940000156349.c.f	ENSGT00530000063604.B.b	ENSGT00940000159391.c	ENSGT00390000014594.e.a.a.a	ENSGT01030000234558.C.p.a	ENSGT00940000156012.c	ENSGT00950000182920.b.a.a.j	ENSGT00940000166091.w.b
Common carp reference	MODERN SPECIES	17	haus5 (ENSCCRG00000062060)	fzr1a (ENSCCRG00000010959)	ENSCCRG00000025413	ENSCCRG00000015807	csnk1g2b (ENSCCRG00000003659)	zgc:101100 (ENSCCRG00000047566)	rexo1 (ENSCCRG00000047618)	mknk2b (ENSCCRG00000066026)	mob3a (ENSCCRG00000055183)	zap70 (ENSCCRG00000025854)	adamts10 (ENSCCRG00000066195)	myo1f (ENSCCRG00000029829)	acer1 (ENSCCRG00000056247) #19	MLLT1 (ENSCCRG00000065280) #20	acsbg2 (ENSCCRG00000055989) #21	rfx2 (ENSCCRG00000002356) #22	ENSCCRG00000002390	ENSCCRG00000031943	trabd2b (ENSCCRG00000028922)	ENSCCRG00000031950	ENSCCRG00000028946	foxe3 (ENSCCRG00000037764)	ENSCCRG00000021021	ENSCCRG00000016188	slc35a3a (ENSCCRG00000028952)	ENSCCRG00000003809	sec22bb (ENSCCRG00000057600)	npl (ENSCCRG00000080349)	ENSCCRG00000002110	zgc:92140 (ENSCCRG00000007147)	colgalt2b (ENSCCRG00000007209)
Golden-line barbel	MODERN SPECIES	15	ENSSGRG00000017691	fzr1a (ENSSGRG00000017674)	ENSSGRG00000017672	dohh (ENSSGRG00000017670)	ENSSGRG00000017668	csnk1g2b (ENSSGRG00000017559)	rexo1 (ENSSGRG00000017555)	mknk2b (ENSSGRG00000017554)	mob3a (ENSSGRG00000017553)	zap70 (ENSSGRG00000017333)	adamts10 (ENSSGRG00000017321)	myo1f (ENSSGRG00000015438)	acer1 (ENSSGRG00000015408) #19	MLLT1 (ENSSGRG00000015407) #20	acsbg2 (ENSSGRG00000015365) #21	rfx2 (ENSSGRG00000015363) #22	ENSSGRG00000015361	ENSSGRG00000015360	ENSSGRG00000015359	trabd2b (ENSSGRG00000015358)	FAM78B (ENSSGRG00000015357)	slc35a3a (ENSSGRG00000015338)	ENSSGRG00000015307	sec22bb (ENSSGRG00000015297)	npl (ENSSGRG00000015277)	EDEM3 (ENSSGRG00000014908)	ENSSGRG00000014903	colgalt2b (ENSSGRG00000014781)	rgl1 (ENSSGRG00000014775)	plin3 (ENSSGRG00000014774)	zgc:77486 (ENSSGRG00000014773)
Zebrafish	MODERN SPECIES	23	dohh (ENSDARG00000003564)	smim24 (ENSDARG00000095633)	ENSDARG00000092533	ENSDARG00000043210	csnk1g2b (ENSDARG00000034056)	zgc:101100 (ENSDARG00000021959)	rexo1 (ENSDARG00000026986)	mknk2b (ENSDARG00000015164)	mob3a (ENSDARG00000019113)	zap70 (ENSDARG00000015752)	adamts10 (ENSDARG00000075188)	myo1f (ENSDARG00000078734)	acer1 (ENSDARG00000010347) #19	MLLT1 (ENSDARG00000043185) #20	acsbg2 (ENSDARG00000004094) #21	rfx2 (ENSDARG00000013575) #22	ENSDARG00000015356	znf692 (ENSDARG00000078434)	ENSDARG00000079315	trabd2b (ENSDARG00000088816)	foxd2 (ENSDARG00000058133)	foxe3 (ENSDARG00000062892)	fam78bb (ENSDARG00000113552)	slc35a3a (ENSDARG00000013222)	notch2 (ENSDARG00000043130)	ENSDARG00000104329	sec22bb (ENSDARG00000100435)	npl (ENSDARG00000009390)	EDEM3 (ENSDARG00000074129)	zgc:92140 (ENSDARG00000098592)	colgalt2b (ENSDARG00000014670)
Clupeiformes	ANCESTRAL SPECIES	189	ENSGT00940000159238	ENSGT00390000010652.D.a.a	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00390000000259.k.b	ENSGT00940000159007	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00970000197265	ENSGT00390000018525.a.b.e.b	ENSGT00940000155530	ENSGT00940000159560	ENSGT00940000164519.c.b
Atlantic herring	MODERN SPECIES	1	klhl26 (ENSCHAG00000018395)	CRTC1 (ENSCHAG00000018389)	comp (ENSCHAG00000016402)	tmem38a (ENSCHAG00000016352)	smim7 (ENSCHAG00000016345)	MED26 (ENSCHAG00000016342)	slc35e1 (ENSCHAG00000016306)	mknk2b (ENSCHAG00000016071)	mob3a (ENSCHAG00000016013)	zap70 (ENSCHAG00000015955)	adamts10 (ENSCHAG00000015051)	myo1f (ENSCHAG00000010221)	acer1 (ENSCHAG00000010067) #19	mllt1b (ENSCHAG00000010040) #20	acsbg2 (ENSCHAG00000007294) #21	rfx2 (ENSCHAG00000006984) #22	FCHO1 (ENSCHAG00000006957)	ENSCHAG00000006946	ENSCHAG00000006552	sft2d2a (ENSCHAG00000006485)	tmem45a (ENSCHAG00000006462)	sin3b (ENSCHAG00000003941)	ENSCHAG00000003826	ENSCHAG00000003613	ENSCHAG00000003558	ENSCHAG00000003528	ENSCHAG00000003466	ENSCHAG00000003450	ZNHIT6 (ENSCHAG00000003417)	ccn1 (ENSCHAG00000003344)	DDAH1 (ENSCHAG00000003298)
Denticle herring	MODERN SPECIES	4	ENSDCDG00000029894	ENSDCDG00000029900	uqcrh (ENSDCDG00000029902)	ENSDCDG00000029914	dmbx1b (ENSDCDG00000029936)	mknk1 (ENSDCDG00000029971)	mob3c (ENSDCDG00000030715)	elovl1b (ENSDCDG00000030717)	ENSDCDG00000030720	btf3l4 (ENSDCDG00000030723)	org (ENSDCDG00000030724)	ENSDCDG00000030734	ENSDCDG00000031019	mllt1b (ENSDCDG00000031024) #20	acsbg2 (ENSDCDG00000031085) #21	rfx2 (ENSDCDG00000031793) #22	FCHO1 (ENSDCDG00000031842)	ENSDCDG00000031856	sft2d2a (ENSDCDG00000031859)	tmem45a (ENSDCDG00000031870)	sin3b (ENSDCDG00000031955)	ENSDCDG00000032781	acbd6 (ENSDCDG00000032938)	lhx4 (ENSDCDG00000003091)	qsox1 (ENSDCDG00000003118)	ENSDCDG00000003205	ubxn6 (ENSDCDG00000003236)	hdgfl2 (ENSDCDG00000003265)	ap3d1 (ENSDCDG00000003362)	C2CD4C (ENSDCDG00000003497)	gna15.4 (ENSDCDG00000003502)
Spotted gar	MODERN SPECIES	657	dohh (ENSLOCG00000001335)	ENSLOCG00000001315	ENSLOCG00000001284	mfsd12a (ENSLOCG00000001259)	csnk1g2b (ENSLOCG00000001228)	rexo1 (ENSLOCG00000001203)	mknk2a (ENSLOCG00000001172)	mob3a (ENSLOCG00000001154)	zap70 (ENSLOCG00000001129)	adamts10 (ENSLOCG00000001103)	myo1f (ENSLOCG00000001068)	ENSLOCG00000001045	acer1 (ENSLOCG00000001026) #19	mllt1b (ENSLOCG00000001004) #20	acsbg2 (ENSLOCG00000000968) #21	rfx2 (ENSLOCG00000000921) #22	FCHO1 (ENSLOCG00000000887)	MAP1S (ENSLOCG00000000850)	ENSLOCG00000000801	gadd45ba (ENSLOCG00000000752)	gng7 (ENSLOCG00000000727)	diras1b (ENSLOCG00000017626)	APC2 (ENSLOCG00000000661)	ENSLOCG00000000630	reep6 (ENSLOCG00000000590)	zgc:113223 (ENSLOCG00000000559)	ENSLOCG00000000516	ENSLOCG00000000478	sgta (ENSLOCG00000000394)	SLC39A3 (ENSLOCG00000000362)	slc1a8b (ENSLOCG00000000305)
Reedfish	MODERN SPECIES	3	ENSECRG00000012546	ENSECRG00000012561	ENSECRG00000012587	IFI30 (ENSECRG00000012607)	ENSECRG00000012627	MAST3 (ENSECRG00000012747)	ENSECRG00000012939	ENSECRG00000012966	ENSECRG00000012978	ENSECRG00000012992	slc1a8b (ENSECRG00000013018)	elavl1b (ENSECRG00000013049)	tspan37 (ENSECRG00000013133)	mllt1b (ENSECRG00000013154) #20	acsbg2 (ENSECRG00000013188) #21	rfx2 (ENSECRG00000013225) #22	ENSECRG00000013290	ENSECRG00000013330	MAP1S (ENSECRG00000013348)	ENSECRG00000013369	gadd45ba (ENSECRG00000013381)	gng7 (ENSECRG00000013395)	diras1b (ENSECRG00000013404)	SLC39A3 (ENSECRG00000013414)	sgta (ENSECRG00000013438)	thop1 (ENSECRG00000013480)	ENSECRG00000013515	ENSECRG00000013543	ENSECRG00000013559	ENSECRG00000013565	ENSECRG00000013601