Vertebrata	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.a #22
Euteleostomi	ANCESTRAL SPECIES	436								ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00940000159808	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000164500	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.b ##30	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872
Tetrapoda	ANCESTRAL SPECIES	59	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.b ##30	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872
Amniota	ANCESTRAL SPECIES	23	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT01050000248388	ENSGT00950000182993.A.a #27	ENSGT00940000163125
Mammalia	ANCESTRAL SPECIES	117					ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT01050000248388	ENSGT00950000182993.A.a #27	ENSGT00940000163125
Theria	ANCESTRAL SPECIES	41	ENSGT00940000164486	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000165061
Eutheria	ANCESTRAL SPECIES	24	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Primates	ANCESTRAL SPECIES	18	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Catarrhini	ANCESTRAL SPECIES		ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Macaca	ANCESTRAL SPECIES	24	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT01100000263508.A.d.e.a.b #19	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Rhesus	MODERN SPECIES	10	CD70 (ENSMMUG00000011042) #7	TNFSF9 (ENSMMUG00000001985) #8	TUBB4A (ENSMMUG00000014216) #9	DENND1C (ENSMMUG00000005600) #10	CRB3 (ENSMMUG00000050193) #11	SLC25A23 (ENSMMUG00000005598) #12	SLC25A41 (ENSMMUG00000016526) #13	KHSRP (ENSMMUG00000005597) #14	PSPN (ENSMMUG00000053244) #15	ALKBH7 (ENSMMUG00000000054) #16	CLPP (ENSMMUG00000028914) #17	ACER1 (ENSMMUG00000005698) #18	ENSMMUG00000063389 #19	MLLT1 (ENSMMUG00000005697) #20	ACSBG2 (ENSMMUG00000018937) #21	RFX2 (ENSMMUG00000011967) #22	RANBP3 (ENSMMUG00000011964) #23	CAPS (ENSMMUG00000011963) #24	NDUFA11 (ENSMMUG00000016665) #25	FUT5 (ENSMMUG00000050702) #26	NRTN (ENSMMUG00000058031) #27	DUS3L (ENSMMUG00000031027) #28	LONP1 (ENSMMUG00000020707) #29	RPL36 (ENSMMUG00000041188) #30	HSD11B1L (ENSMMUG00000020705) #31	MICOS13 (ENSMMUG00000028920) #32	SAFB (ENSMMUG00000017970) #33	SAFB2 (ENSMMUG00000017968) #34	ENSMMUG00000052315 #35	ZNRF4 (ENSMMUG00000012312) #36	PTPRS (ENSMMUG00000011962) #37
Crab-eating macaque	MODERN SPECIES	10	TNFSF14 (ENSMFAG00000003750)	CD70 (ENSMFAG00000041094) #7	TUBB4A (ENSMFAG00000059050) #9	CRB3 (ENSMFAG00000040330) #11	DENND1C (ENSMFAG00000031978) #10	SLC25A23 (ENSMFAG00000039503) #12	ENSMFAG00000063742 #13	KHSRP (ENSMFAG00000000292) #14	GTF2F1 (ENSMFAG00000003355)	ALKBH7 (ENSMFAG00000045978) #16	CLPP (ENSMFAG00000063171) #17	ACER1 (ENSMFAG00000043465) #18	ENSMFAG00000064713 #19	MLLT1 (ENSMFAG00000039501) #20	ACSBG2 (ENSMFAG00000033353) #21	RFX2 (ENSMFAG00000036589) #22	RANBP3 (ENSMFAG00000031395) #23	CAPS (ENSMFAG00000044715) #24	ENSMFAG00000003802 #25	FUT5 (ENSMFAG00000038995) #26	FUT3 (ENSMFAG00000003882) ##26	NRTN (ENSMFAG00000038415) #27	PRR22 (ENSMFAG00000031910)	CATSPERD (ENSMFAG00000045623)	ENSMFAG00000043447 #29	ENSMFAG00000034345 #30	HSD11B1L (ENSMFAG00000044973) #31	MICOS13 (ENSMFAG00000034498) #32	ENSMFAG00000003885	SAFB2 (ENSMFAG00000039706) #34	TINCR (ENSMFAG00000032284)
Pig-tailed macaque	MODERN SPECIES	76	CD70 (ENSMNEG00000032223) #7	TNFSF9 (ENSMNEG00000032348) #8	TUBB4A (ENSMNEG00000038280) #9	DENND1C (ENSMNEG00000029798) #10	CRB3 (ENSMNEG00000040789) #11	SLC25A23 (ENSMNEG00000033667) #12	SLC25A41 (ENSMNEG00000031428) #13	KHSRP (ENSMNEG00000036982) #14	GTF2F1 (ENSMNEG00000038838)	PSPN (ENSMNEG00000039281) #15	ALKBH7 (ENSMNEG00000029223) #16	ENSMNEG00000041705	ACER1 (ENSMNEG00000029728) #18	MLLT1 (ENSMNEG00000031529) #20	ACSBG2 (ENSMNEG00000044133) #21	RFX2 (ENSMNEG00000030375) #22	RANBP3 (ENSMNEG00000036230) #23	CAPS (ENSMNEG00000041627) #24	VMAC (ENSMNEG00000037094)	NDUFA11 (ENSMNEG00000004413) #25	ENSMNEG00000011100 ##26	ENSMNEG00000032896 ##26	NRTN (ENSMNEG00000019173) #27	DUS3L (ENSMNEG00000036509) #28	PRR22 (ENSMNEG00000045136)	CATSPERD (ENSMNEG00000021927)	LONP1 (ENSMNEG00000042912) #29	ENSMNEG00000044430 ##30	HSD11B1L (ENSMNEG00000033295) #31	MICOS13 (ENSMNEG00000027324) #32	SAFB (ENSMNEG00000035637) #33
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00910000147670
Olive baboon	MODERN SPECIES	12	TRIP10 (ENSPANG00000005035)	GPR108 (ENSPANG00000022720)	TNFSF14 (ENSPANG00000030479)	CD70 (ENSPANG00000000880) #7	TNFSF9 (ENSPANG00000051412) #8	TUBB4A (ENSPANG00000006306) #9	DENND1C (ENSPANG00000004918) #10	CRB3 (ENSPANG00000003084) #11	SLC25A23 (ENSPANG00000008553) #12	PSPN (ENSPANG00000030010) #15	ALKBH7 (ENSPANG00000035776) #16	CLPP (ENSPANG00000047270) #17	ACER1 (ENSPANG00000006330) #18	MLLT1 (ENSPANG00000015038) #20	ACSBG2 (ENSPANG00000009518) #21	RFX2 (ENSPANG00000012105) #22	RANBP3 (ENSPANG00000031036) #23	CAPS (ENSPANG00000007003) #24	VMAC (ENSPANG00000032013)	NDUFA11 (ENSPANG00000003098) #25	ENSPANG00000032774 ##26	NRTN (ENSPANG00000010856) #27	ENSPANG00000042524	PRR22 (ENSPANG00000007769)	LONP1 (ENSPANG00000010631) #29	ENSPANG00000032485 ##30	HSD11B1L (ENSPANG00000003971) #31	MICOS13 (ENSPANG00000017471) #32	SAFB (ENSPANG00000007770) #33	SAFB2 (ENSPANG00000007004) #34	TINCR (ENSPANG00000045730)
Cercopithecinae_d	ANCESTRAL SPECIES	22	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00910000147670
Drill	MODERN SPECIES	1534	TNFSF14 (ENSMLEG00000043307)	CD70 (ENSMLEG00000016471) #7	TUBB4A (ENSMLEG00000030013) #9	DENND1C (ENSMLEG00000039863) #10	CRB3 (ENSMLEG00000034520) #11	SLC25A23 (ENSMLEG00000040513) #12	SLC25A41 (ENSMLEG00000033366) #13	KHSRP (ENSMLEG00000030501) #14	GTF2F1 (ENSMLEG00000027908)	PSPN (ENSMLEG00000036794) #15	ALKBH7 (ENSMLEG00000039193) #16	CLPP (ENSMLEG00000022592) #17	ACER1 (ENSMLEG00000042127) #18	MLLT1 (ENSMLEG00000034524) #20	ACSBG2 (ENSMLEG00000021100) #21	RFX2 (ENSMLEG00000025063) #22	RANBP3 (ENSMLEG00000028374) #23	CAPS (ENSMLEG00000036098) #24	VMAC (ENSMLEG00000041920)	NDUFA11 (ENSMLEG00000028488) #25	FUT3 (ENSMLEG00000037551) ##26	ENSMLEG00000036792 ##26	DUS3L (ENSMLEG00000043222) #28	PRR22 (ENSMLEG00000035921)	CATSPERD (ENSMLEG00000031145)	LONP1 (ENSMLEG00000039601) #29	RPL36 (ENSMLEG00000040908) #30	HSD11B1L (ENSMLEG00000034487) #31	MICOS13 (ENSMLEG00000029750) #32	SAFB (ENSMLEG00000038637) #33	SAFB2 (ENSMLEG00000034562) #34
Sooty mangabey	MODERN SPECIES	177	CD70 (ENSCATG00000013090) #7	TNFSF9 (ENSCATG00000032350) #8	TUBB4A (ENSCATG00000032861) #9	DENND1C (ENSCATG00000016215) #10	CRB3 (ENSCATG00000036281) #11	SLC25A23 (ENSCATG00000033633) #12	SLC25A41 (ENSCATG00000035228) #13	KHSRP (ENSCATG00000036458) #14	ENSCATG00000034000	PSPN (ENSCATG00000035142) #15	ALKBH7 (ENSCATG00000030199) #16	CLPP (ENSCATG00000032343) #17	ACER1 (ENSCATG00000026770) #18	MLLT1 (ENSCATG00000036992) #20	ACSBG2 (ENSCATG00000033762) #21	RFX2 (ENSCATG00000040945) #22	RANBP3 (ENSCATG00000044346) #23	CAPS (ENSCATG00000030192) #24	VMAC (ENSCATG00000041336)	ENSCATG00000041060 #25	ENSCATG00000040235 ##26	ENSCATG00000040267 ##26	NRTN (ENSCATG00000038604) #27	DUS3L (ENSCATG00000040809) #28	PRR22 (ENSCATG00000033772)	CATSPERD (ENSCATG00000039925)	LONP1 (ENSCATG00000040763) #29	RPL36 (ENSCATG00000032940) #30	HSD11B1L (ENSCATG00000029572) #31	MICOS13 (ENSCATG00000018927) #32	ENSCATG00000014937
Vervet Monkey	MODERN SPECIES	25	CD70 (ENSCSAG00000009543) #7	TNFSF9 (ENSCSAG00000009573) #8	TUBB4A (ENSCSAG00000009578) #9	DENND1C (ENSCSAG00000009587) #10	CRB3 (ENSCSAG00000009594) #11	SLC25A23 (ENSCSAG00000009602) #12	SLC25A41 (ENSCSAG00000009616) #13	KHSRP (ENSCSAG00000009626) #14	ENSCSAG00000009656	PSPN (ENSCSAG00000009668) #15	ALKBH7 (ENSCSAG00000009674) #16	CLPP (ENSCSAG00000009679) #17	ACER1 (ENSCSAG00000009688) #18	MLLT1 (ENSCSAG00000009698) #20	ACSBG2 (ENSCSAG00000009753) #21	RFX2 (ENSCSAG00000009771) #22	ENSCSAG00000009781 #24	RANBP3 (ENSCSAG00000009796) #23	ENSCSAG00000009786 #24	ENSCSAG00000018824	VMAC (ENSCSAG00000018823)	NDUFA11 (ENSCSAG00000009802) #25	FUT5 (ENSCSAG00000018822) #26	ENSCSAG00000009812 ##26	NRTN (ENSCSAG00000009819) #27	DUS3L (ENSCSAG00000009883) #28	PRR22 (ENSCSAG00000009903)	LONP1 (ENSCSAG00000009918) #29	HSD11B1L (ENSCSAG00000009923) #31	MICOS13 (ENSCSAG00000009934) #32	SAFB (ENSCSAG00000009949) #33
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051.mc.a #14	ENSGT00440000038032.q	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00940000167406	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.b.a ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Golden snub-nosed monkey	MODERN SPECIES	1318	CD70 (ENSRROG00000040655) #7	ENSRROG00000007343	TNFSF9 (ENSRROG00000043525) #8	TUBB4A (ENSRROG00000010011) #9	DENND1C (ENSRROG00000036222) #10	CRB3 (ENSRROG00000035164) #11	SLC25A23 (ENSRROG00000009609) #12	SLC25A41 (ENSRROG00000044292) #13	KHSRP (ENSRROG00000031782) #14	ENSRROG00000020433	ALKBH7 (ENSRROG00000043210) #16	CLPP (ENSRROG00000042048) #17	ACER1 (ENSRROG00000022472) #18	MLLT1 (ENSRROG00000042162) #20	ACSBG2 (ENSRROG00000035513) #21	RFX2 (ENSRROG00000028821) #22	RANBP3 (ENSRROG00000032677) #23	CAPS (ENSRROG00000043353) #24	VMAC (ENSRROG00000031275)	NDUFA11 (ENSRROG00000001285) #25	FUT3 (ENSRROG00000032467) ##26	ENSRROG00000043951 ##26	NRTN (ENSRROG00000005450) #27	DUS3L (ENSRROG00000037008) #28	PRR22 (ENSRROG00000009666)	CATSPERD (ENSRROG00000039160)	LONP1 (ENSRROG00000026671) #29	ENSRROG00000040246 #30	HSD11B1L (ENSRROG00000021400) #31	MICOS13 (ENSRROG00000031692) #32	SAFB (ENSRROG00000029278) #33
Black snub-nosed monkey	MODERN SPECIES	198	ENSRBIG00000038426	CA4 (ENSRBIG00000036296)	ZNHIT3 (ENSRBIG00000028062)	MYO19 (ENSRBIG00000043731)	PIGW (ENSRBIG00000016056)	ENSRBIG00000001284	MRM1 (ENSRBIG00000040494)	ENSRBIG00000036146	LHX1 (ENSRBIG00000008229)	AATF (ENSRBIG00000039099)	ACACA (ENSRBIG00000044612)	ENSRBIG00000039364	ACER1 (ENSRBIG00000035610) #18	MLLT1 (ENSRBIG00000031734) #20	ACSBG2 (ENSRBIG00000029754) #21	RFX2 (ENSRBIG00000033776) #22	RANBP3 (ENSRBIG00000027814) #23	CAPS (ENSRBIG00000044100) #24	NDUFA11 (ENSRBIG00000038563) #25	FUT5 (ENSRBIG00000044634) #26
Hominoidea	ANCESTRAL SPECIES		ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.a.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Hominidae	ANCESTRAL SPECIES		ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.a.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.a.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Gorilla	MODERN SPECIES	10	TNFSF9 (ENSGGOG00000023927) #8	TUBB4A (ENSGGOG00000027067) #9	DENND1C (ENSGGOG00000007075) #10	CRB3 (ENSGGOG00000007070) #11	SLC25A23 (ENSGGOG00000007058) #12	ENSGGOG00000007048 #13	KHSRP (ENSGGOG00000007028) #14	GTF2F1 (ENSGGOG00000000318)	PSPN (ENSGGOG00000000316) #15	ALKBH7 (ENSGGOG00000027915) #16	ENSGGOG00000011638	ACER1 (ENSGGOG00000010886) #18	ENSGGOG00000040780	MLLT1 (ENSGGOG00000010872) #20	ACSBG2 (ENSGGOG00000026850) #21	RFX2 (ENSGGOG00000009633) #22	RANBP3 (ENSGGOG00000006300) #23	ENSGGOG00000006292 #24	VMAC (ENSGGOG00000038181)	NDUFA11 (ENSGGOG00000006279) #25	FUT5 (ENSGGOG00000006269) #26	FUT3 (ENSGGOG00000006272) ##26	FUT6 (ENSGGOG00000006260) ##26	NRTN (ENSGGOG00000006255) #27	DUS3L (ENSGGOG00000027433) #28	PRR22 (ENSGGOG00000005789)	CATSPERD (ENSGGOG00000015377)	LONP1 (ENSGGOG00000015370) #29	RPL36 (ENSGGOG00000015365) #30	HSD11B1L (ENSGGOG00000015362) #31	ENSGGOG00000011081 #32
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.a.a #26	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.a.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32
Pan	ANCESTRAL SPECIES	14	ENSGT00390000006244 #8	ENSGT00940000161972.d.a #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00910000148057	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389.b.b ##26	ENSGT00940000163389.a.b ##26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Bonobo	MODERN SPECIES	10	CD70 (ENSPPAG00000029346) #7	TNFSF9 (ENSPPAG00000043434) #8	TUBB4A (ENSPPAG00000021486) #9	DENND1C (ENSPPAG00000037306) #10	CRB3 (ENSPPAG00000028757) #11	SLC25A23 (ENSPPAG00000040203) #12	SLC25A41 (ENSPPAG00000037155) #13	ENSPPAG00000036398 #14	GTF2F1 (ENSPPAG00000006377)	PSPN (ENSPPAG00000038423) #15	ALKBH7 (ENSPPAG00000028564) #16	CLPP (ENSPPAG00000041016) #17	ACER1 (ENSPPAG00000041682) #18	MLLT1 (ENSPPAG00000042286) #20	ACSBG2 (ENSPPAG00000031354) #21	RFX2 (ENSPPAG00000041867) #22	RANBP3 (ENSPPAG00000040739) #23	ENSPPAG00000022696 #24	VMAC (ENSPPAG00000031186)	ENSPPAG00000024786 #25	FUT3 (ENSPPAG00000035068) ##26	FUT6 (ENSPPAG00000030226) ##26	DUS3L (ENSPPAG00000038054) #28	PRR22 (ENSPPAG00000040731)	CATSPERD (ENSPPAG00000025456)	LONP1 (ENSPPAG00000038062) #29	RPL36 (ENSPPAG00000027352) #30	HSD11B1L (ENSPPAG00000018871) #31	ENSPPAG00000039035 #32	SAFB (ENSPPAG00000035129) #33	SAFB2 (ENSPPAG00000043392) #34
Chimpanzee	MODERN SPECIES	10	TNFSF9 (ENSPTRG00000043305) #8	TUBB4A (ENSPTRG00000010369) #9	DENND1C (ENSPTRG00000029159) #10	CRB3 (ENSPTRG00000010367) #11	SLC25A23 (ENSPTRG00000010366) #12	SLC25A41 (ENSPTRG00000010365) #13	KHSRP (ENSPTRG00000010364) #14	GTF2F1 (ENSPTRG00000010362)	PSPN (ENSPTRG00000045539) #15	ALKBH7 (ENSPTRG00000010360) #16	CLPP (ENSPTRG00000010359) #17	ACER1 (ENSPTRG00000010358) #18	ENSPTRG00000045179	MLLT1 (ENSPTRG00000010356) #20	ACSBG2 (ENSPTRG00000010354) #21	RFX2 (ENSPTRG00000010352) #22	RANBP3 (ENSPTRG00000010351) #23	CAPS (ENSPTRG00000010350) #24	VMAC (ENSPTRG00000010349)	NDUFA11 (ENSPTRG00000029161) #25	FUT3 (ENSPTRG00000010346) ##26	FUT5 (ENSPTRG00000010347) ##26	NRTN (ENSPTRG00000010344) #27	DUS3L (ENSPTRG00000010343) #28	PRR22 (ENSPTRG00000032573)	CATSPERD (ENSPTRG00000046125)	LONP1 (ENSPTRG00000010339) #29	RPL36 (ENSPTRG00000010338) #30	HSD11B1L (ENSPTRG00000010337) #31	MICOS13 (ENSPTRG00000010336) #32	SAFB (ENSPTRG00000010335) #33
Human	MODERN SPECIES	10	CD70 (ENSG00000125726) #7	TNFSF9 (ENSG00000125657) #8	TUBB4A (ENSG00000104833) #9	DENND1C (ENSG00000205744) #10	CRB3 (ENSG00000130545) #11	SLC25A23 (ENSG00000125648) #12	SLC25A41 (ENSG00000181240) #13	KHSRP (ENSG00000088247) #14	GTF2F1 (ENSG00000125651)	PSPN (ENSG00000125650) #15	ALKBH7 (ENSG00000125652) #16	CLPP (ENSG00000125656) #17	ACER1 (ENSG00000167769) #18	MLLT1 (ENSG00000130382) #20	ACSBG2 (ENSG00000130377) #21	RFX2 (ENSG00000087903) #22	RANBP3 (ENSG00000031823) #23	CAPS (ENSG00000105519) #24	VMAC (ENSG00000187650)	NDUFA11 (ENSG00000174886) #25	ENSG00000267740	FUT5 (ENSG00000130383) #26	FUT3 (ENSG00000171124) ##26	FUT6 (ENSG00000156413) ##26	NRTN (ENSG00000171119) #27	DUS3L (ENSG00000141994) #28	ENSG00000267157	PRR22 (ENSG00000212123)	CATSPERD (ENSG00000174898)	LONP1 (ENSG00000196365) #29	HSD11B1L (ENSG00000167733) #31
Orangutan	MODERN SPECIES	10	TNFSF14 (ENSPPYG00000031179)	ENSPPYG00000009460 #7	TNFSF9 (ENSPPYG00000009459) #8	TUBB4A (ENSPPYG00000041695) #9	DENND1C (ENSPPYG00000009458) #10	ENSPPYG00000009457 #11	SLC25A23 (ENSPPYG00000009456) #12	SLC25A41 (ENSPPYG00000009455) #13	KHSRP (ENSPPYG00000009454) #14	PSPN (ENSPPYG00000009451) #15	ALKBH7 (ENSPPYG00000033281) #16	CLPP (ENSPPYG00000009449) #17	ACER1 (ENSPPYG00000009448) #18	MLLT1 (ENSPPYG00000009447) #20	ACSBG2 (ENSPPYG00000009446) #21	RFX2 (ENSPPYG00000009445) #22	RANBP3 (ENSPPYG00000009444) #23	ENSPPYG00000036062 #24	ENSPPYG00000030201 #25	FUT5 (ENSPPYG00000009438) #26	FUT6 (ENSPPYG00000009437) ##26	NRTN (ENSPPYG00000009436) #27	DUS3L (ENSPPYG00000009435) #28	PRR22 (ENSPPYG00000009434)	CATSPERD (ENSPPYG00000009433)	LONP1 (ENSPPYG00000009432) #29	RPL36 (ENSPPYG00000009431) #30	HSD11B1L (ENSPPYG00000009430) #31	ENSPPYG00000009429 #32	SAFB (ENSPPYG00000009428) #33	SAFB2 (ENSPPYG00000009427) #34
Gibbon	MODERN SPECIES		TRIP10 (ENSNLEG00000000351)	ENSNLEG00000000344	C3 (ENSNLEG00000016006)	TNFSF14 (ENSNLEG00000016000)	CD70 (ENSNLEG00000015993) #7	TUBB4A (ENSNLEG00000032392) #9	DENND1C (ENSNLEG00000015941) #10	CRB3 (ENSNLEG00000030283) #11	ENSNLEG00000015935 #12	KHSRP (ENSNLEG00000015923) #14	GTF2F1 (ENSNLEG00000015909)	ENSNLEG00000029103	ACER1 (ENSNLEG00000015897) #18	ENSNLEG00000015892 #20	ACSBG2 (ENSNLEG00000015883) #21	RFX2 (ENSNLEG00000015842) #22	RANBP3 (ENSNLEG00000015710) #23	CAPS (ENSNLEG00000015702) #24	TPRX2 (ENSNLEG00000000972)	ENSNLEG00000000975	ENSNLEG00000001326	ENSNLEG00000001333	CABP5 (ENSNLEG00000032429)	PLA2G4C (ENSNLEG00000004261)	ENSNLEG00000004264	ENSNLEG00000028641	ENSNLEG00000034930	ENSNLEG00000004344	ODAD1 (ENSNLEG00000004346)	EMP3 (ENSNLEG00000004357)	TMEM143 (ENSNLEG00000004369)
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032.s	ENSGT00950000182993.B.b #15	ENSGT00390000014585.k #16	ENSGT00390000005830.v #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.f #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Cebidae	ANCESTRAL SPECIES	20	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032.s	ENSGT00950000182993.B.b #15	ENSGT00390000014585.k #16	ENSGT00390000005830.v #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.f #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032.s	ENSGT00950000182993.B.b #15	ENSGT00390000014585.k #16	ENSGT00390000005830.v #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442.a #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.f #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Capuchin	MODERN SPECIES	53	TNFSF9 (ENSCCAG00000029091) #8	TUBB4A (ENSCCAG00000013999) #9	DENND1C (ENSCCAG00000034905) #10	CRB3 (ENSCCAG00000023680) #11	SLC25A23 (ENSCCAG00000022370) #12	SLC25A41 (ENSCCAG00000026520) #13	KHSRP (ENSCCAG00000025297) #14	ENSCCAG00000037309	PSPN (ENSCCAG00000025813) #15	ALKBH7 (ENSCCAG00000025999) #16	CLPP (ENSCCAG00000037133) #17	ENSCCAG00000030606	ACER1 (ENSCCAG00000030282) #18	MLLT1 (ENSCCAG00000026378) #20	ACSBG2 (ENSCCAG00000028068) #21	RFX2 (ENSCCAG00000028516) #22	RANBP3 (ENSCCAG00000033247) #23	CAPS (ENSCCAG00000021578) #24	VMAC (ENSCCAG00000029347)	ENSCCAG00000033610	ENSCCAG00000031284 #26	NRTN (ENSCCAG00000024847) #27	DUS3L (ENSCCAG00000036889) #28	PRR22 (ENSCCAG00000032448)	CATSPERD (ENSCCAG00000028129)	ENSCCAG00000033624	LONP1 (ENSCCAG00000025968) #29	ENSCCAG00000033023 #30	HSD11B1L (ENSCCAG00000032266) #31	MICOS13 (ENSCCAG00000036233) #32	SAFB (ENSCCAG00000020193) #33
Bolivian squirrel monkey	MODERN SPECIES	150	CD70 (ENSSBOG00000032929) #7	TNFSF9 (ENSSBOG00000036008) #8	TUBB4A (ENSSBOG00000019437) #9	DENND1C (ENSSBOG00000030628) #10	CRB3 (ENSSBOG00000030526) #11	SLC25A23 (ENSSBOG00000033178) #12	SLC25A41 (ENSSBOG00000020009) #13	KHSRP (ENSSBOG00000034871) #14	GTF2F1 (ENSSBOG00000033946)	PSPN (ENSSBOG00000031809) #15	ALKBH7 (ENSSBOG00000024563) #16	CLPP (ENSSBOG00000036193) #17	ACER1 (ENSSBOG00000028157) #18	MLLT1 (ENSSBOG00000025950) #20	ACSBG2 (ENSSBOG00000030379) #21	RFX2 (ENSSBOG00000017266) #22	RANBP3 (ENSSBOG00000029392) #23	CAPS (ENSSBOG00000034784) #24	VMAC (ENSSBOG00000032055)	NDUFA11 (ENSSBOG00000032051) #25	ENSSBOG00000026247 #26	NRTN (ENSSBOG00000034565) #27	DUS3L (ENSSBOG00000020402) #28	PRR22 (ENSSBOG00000011474)	CATSPERD (ENSSBOG00000029793)	LONP1 (ENSSBOG00000031618) #29	RPL36 (ENSSBOG00000034984) #30	HSD11B1L (ENSSBOG00000024882) #31	ENSSBOG00000014431 #32	SAFB (ENSSBOG00000026291) #33	SAFB2 (ENSSBOG00000032315) #34
Marmoset	MODERN SPECIES	14	TNFSF14 (ENSCJAG00000085938)	CD70 (ENSCJAG00000081455) #7	TNFSF9 (ENSCJAG00000016530) #8	TUBB4A (ENSCJAG00000016534) #9	DENND1C (ENSCJAG00000016543) #10	CRB3 (ENSCJAG00000044939) #11	SLC25A23 (ENSCJAG00000016577) #12	KHSRP (ENSCJAG00000016627) #14	GTF2F1 (ENSCJAG00000016669)	PSPN (ENSCJAG00000016688) #15	ALKBH7 (ENSCJAG00000016691) #16	CLPP (ENSCJAG00000046904) #17	ACER1 (ENSCJAG00000016705) #18	MLLT1 (ENSCJAG00000044059) #20	ACSBG2 (ENSCJAG00000016734) #21	RFX2 (ENSCJAG00000016750) #22	RANBP3 (ENSCJAG00000016791) #23	VMAC (ENSCJAG00000072555)	NDUFA11 (ENSCJAG00000016923) #25	NRTN (ENSCJAG00000016988) #27	DUS3L (ENSCJAG00000016997) #28	PRR22 (ENSCJAG00000017034)	CATSPERD (ENSCJAG00000016893)	LONP1 (ENSCJAG00000017041) #29	HSD11B1L (ENSCJAG00000016948) #31	RPL36 (ENSCJAG00000017072) #30	MICOS13 (ENSCJAG00000017076) #32	SAFB (ENSCJAG00000017081) #33	SAFB2 (ENSCJAG00000041996) #34	TINCR (ENSCJAG00000046186)	PTPRS (ENSCJAG00000017261) #37
Mas night monkey	MODERN SPECIES	937	TNFSF14 (ENSANAG00000020878)	CD70 (ENSANAG00000037767) #7	TNFSF9 (ENSANAG00000028047) #8	TUBB4A (ENSANAG00000035357) #9	DENND1C (ENSANAG00000026774) #10	SLC25A23 (ENSANAG00000037773) #12	SLC25A41 (ENSANAG00000021884) #13	KHSRP (ENSANAG00000027617) #14	ENSANAG00000035546	PSPN (ENSANAG00000027968) #15	ALKBH7 (ENSANAG00000035316) #16	CLPP (ENSANAG00000025005) #17	ACER1 (ENSANAG00000037792) #18	MLLT1 (ENSANAG00000034543) #20	ACSBG2 (ENSANAG00000021889) #21	RFX2 (ENSANAG00000023324) #22	RANBP3 (ENSANAG00000028437) #23	CAPS (ENSANAG00000028375) #24	ENSANAG00000034701 #24	VMAC (ENSANAG00000037811)	NDUFA11 (ENSANAG00000034722) #25	ENSANAG00000005729	NRTN (ENSANAG00000038023) #27	DUS3L (ENSANAG00000021997) #28	PRR22 (ENSANAG00000024920)	ENSANAG00000032966	LONP1 (ENSANAG00000023956) #29	ENSANAG00000029130 ##30	HSD11B1L (ENSANAG00000033693) #31	MICOS13 (ENSANAG00000021680) #32	SAFB (ENSANAG00000028821) #33
Tarsier	MODERN SPECIES	2408														ENSTSYG00000027424	ACSBG2 (ENSTSYG00000008040) #21	RFX2 (ENSTSYG00000012982) #22	RANBP3 (ENSTSYG00000002546) #23
Strepsirrhini	ANCESTRAL SPECIES	26	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.i #33	ENSGT00940000161482 #34
Lemuriformes	ANCESTRAL SPECIES	22	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.i.a #33	ENSGT00940000155916.i.b #33
Mouse lemur	MODERN SPECIES	16	TNFSF14 (ENSMICG00000033223)	CD70 (ENSMICG00000042047) #7	TNFSF9 (ENSMICG00000046337) #8	TUBB4A (ENSMICG00000014890) #9	DENND1C (ENSMICG00000004586) #10	CRB3 (ENSMICG00000034140) #11	SLC25A23 (ENSMICG00000034151) #12	KHSRP (ENSMICG00000007863) #14	GTF2F1 (ENSMICG00000006292)	PSPN (ENSMICG00000044211) #15	ALKBH7 (ENSMICG00000006288) #16	ENSMICG00000006284 #17	ACER1 (ENSMICG00000006279) #18	MLLT1 (ENSMICG00000006273) #20	ACSBG2 (ENSMICG00000014476) #21	RFX2 (ENSMICG00000004022) #22	RANBP3 (ENSMICG00000004018) #23	CAPS (ENSMICG00000004017) #24	VMAC (ENSMICG00000046967)	NDUFA11 (ENSMICG00000033137) #25	NRTN (ENSMICG00000044302) #27	DUS3L (ENSMICG00000007097) #28	PRR22 (ENSMICG00000026944)	CATSPERD (ENSMICG00000047708)	LONP1 (ENSMICG00000007050) #29	RPL36 (ENSMICG00000035474) #30	HSD11B1L (ENSMICG00000007033) #31	MICOS13 (ENSMICG00000007026) #32	ENSMICG00000034927 #33	ENSMICG00000046795 #33	ENSMICG00000008739 #33
Lemuriformes_a	ANCESTRAL SPECIES	17	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.i #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.i.a #33	ENSGT00940000155916.j #33
Greater bamboo lemur	MODERN SPECIES	1								GTF2F1 (ENSPSMG00000001096)	PSPN (ENSPSMG00000001156) #15	ALKBH7 (ENSPSMG00000001168) #16	CLPP (ENSPSMG00000001190) #17	ACER1 (ENSPSMG00000001205) #18	MLLT1 (ENSPSMG00000001229) #20	ENSPSMG00000001321	ACSBG2 (ENSPSMG00000001354) #21	RFX2 (ENSPSMG00000001497) #22	RANBP3 (ENSPSMG00000001649) #23	CAPS (ENSPSMG00000001758) #24	VMAC (ENSPSMG00000001763)	NDUFA11 (ENSPSMG00000001770) #25	ENSPSMG00000001776 #26	NRTN (ENSPSMG00000001783) #27	DUS3L (ENSPSMG00000001817) #28	PRR22 (ENSPSMG00000001830)	CATSPERD (ENSPSMG00000001843)	LONP1 (ENSPSMG00000001890) #29	RPL36 (ENSPSMG00000001940) #30	ENSPSMG00000001945 #31	MICOS13 (ENSPSMG00000001966) #32	SAFB (ENSPSMG00000002292) #33
Coquerels sifaka	MODERN SPECIES	348	CD70 (ENSPCOG00000015987) #7	TNFSF9 (ENSPCOG00000014608) #8	TUBB4A (ENSPCOG00000015978) #9	DENND1C (ENSPCOG00000004246) #10	CRB3 (ENSPCOG00000028855) #11	SLC25A23 (ENSPCOG00000001217) #12	SLC25A41 (ENSPCOG00000003363) #13	KHSRP (ENSPCOG00000027506) #14	GTF2F1 (ENSPCOG00000013474)	PSPN (ENSPCOG00000025496) #15	ALKBH7 (ENSPCOG00000028026) #16	CLPP (ENSPCOG00000027215) #17	ACER1 (ENSPCOG00000016715) #18	MLLT1 (ENSPCOG00000014345) #20	ACSBG2 (ENSPCOG00000027134) #21	RFX2 (ENSPCOG00000027982) #22	RANBP3 (ENSPCOG00000021692) #23	CAPS (ENSPCOG00000026358) #24	VMAC (ENSPCOG00000019572)	NDUFA11 (ENSPCOG00000020260) #25	ENSPCOG00000022083 #26	NRTN (ENSPCOG00000017407) #27	DUS3L (ENSPCOG00000026203) #28	PRR22 (ENSPCOG00000022075)	LONP1 (ENSPCOG00000018361) #29	ENSPCOG00000014752 ##30	HSD11B1L (ENSPCOG00000022053) #31	ENSPCOG00000019276 #32	SAFB (ENSPCOG00000014090) #33	ENSPCOG00000010436 #33	SAFB2 (ENSPCOG00000023260) #34
Bushbaby	MODERN SPECIES	242	TNFSF9 (ENSOGAG00000015299) #8	TUBB4A (ENSOGAG00000027332) #9	DENND1C (ENSOGAG00000034782) #10	CRB3 (ENSOGAG00000008078) #11	SLC25A23 (ENSOGAG00000008076) #12	SLC25A41 (ENSOGAG00000034049) #13	KHSRP (ENSOGAG00000008073) #14	ENSOGAG00000030767	ENSOGAG00000008070	PSPN (ENSOGAG00000033652) #15	ALKBH7 (ENSOGAG00000030625) #16	CLPP (ENSOGAG00000028227) #17	ACER1 (ENSOGAG00000001804) #18	MLLT1 (ENSOGAG00000008063) #20	ENSOGAG00000028426	RFX2 (ENSOGAG00000004261) #22	RANBP3 (ENSOGAG00000004258) #23	CAPS (ENSOGAG00000004255) #24	NDUFA11 (ENSOGAG00000028410) #25	ENSOGAG00000016559 #26	NRTN (ENSOGAG00000016554) #27	DUS3L (ENSOGAG00000016549) #28	PRR22 (ENSOGAG00000033276)	ZNF699 (ENSOGAG00000000834)	ZNF560 (ENSOGAG00000014997)	ENSOGAG00000028908	ZNF121 (ENSOGAG00000025131)	FBXL12 (ENSOGAG00000014529)	PIN1 (ENSOGAG00000017002)	OLFM2 (ENSOGAG00000010428)	COL5A3 (ENSOGAG00000016214)
Euarchontoglires_A	ANCESTRAL SPECIES	24	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Glires	ANCESTRAL SPECIES	25	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000162419 #13	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Lagomorpha	ANCESTRAL SPECIES	566															ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22
Pika	MODERN SPECIES	5083																ENSOPRG00000001440 #22
Rabbit	MODERN SPECIES	924															ACSBG2 (ENSOCUG00000010163) #21	RFX2 (ENSOCUG00000005005) #22
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.b #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37
Long-tailed chinchilla	MODERN SPECIES	202	TUBB4A (ENSCLAG00000008831) #9	DENND1C (ENSCLAG00000012303) #10	ENSCLAG00000014016 #11	SLC25A23 (ENSCLAG00000015826) #12	SLC25A41 (ENSCLAG00000006414) #13	KHSRP (ENSCLAG00000007309) #14	ENSCLAG00000007910	GTF2F1 (ENSCLAG00000008779)	PSPN (ENSCLAG00000016653) #15	ALKBH7 (ENSCLAG00000017244) #16	CLPP (ENSCLAG00000009974) #17	ACER1 (ENSCLAG00000011663) #18	MLLT1 (ENSCLAG00000011833) #20	ENSCLAG00000006362	ACSBG2 (ENSCLAG00000007301) #21	RFX2 (ENSCLAG00000008242) #22	RANBP3 (ENSCLAG00000011775) #23	CAPS (ENSCLAG00000013758) #24	VMAC (ENSCLAG00000012168)	NDUFA11 (ENSCLAG00000008043) #25	DUS3L (ENSCLAG00000008470) #28	PRR22 (ENSCLAG00000009039)	LONP1 (ENSCLAG00000007239) #29	RPL36 (ENSCLAG00000012455) #30	MICOS13 (ENSCLAG00000009496) #32	SAFB (ENSCLAG00000007734) #33	ENSCLAG00000009742 #34	ENSCLAG00000007870	ENSCLAG00000008007 #36	PTPRS (ENSCLAG00000006868) #37	KDM4B (ENSCLAG00000007020)
Degu	MODERN SPECIES	91	TUBB4A (ENSODEG00000015772) #9	ENSODEG00000015746 #10	CRB3 (ENSODEG00000015295) #11	SLC25A23 (ENSODEG00000014916) #12	SLC25A41 (ENSODEG00000015990) #13	KHSRP (ENSODEG00000015021) #14	ENSODEG00000015969	GTF2F1 (ENSODEG00000014900)	PSPN (ENSODEG00000014761) #15	ALKBH7 (ENSODEG00000015141) #16	CLPP (ENSODEG00000015485) #17	ACER1 (ENSODEG00000015726) #18	MLLT1 (ENSODEG00000014883) #20	ENSODEG00000015920	ENSODEG00000015714 #21	RFX2 (ENSODEG00000015368) #22	RANBP3 (ENSODEG00000015257) #23	CAPS (ENSODEG00000016529) #24	VMAC (ENSODEG00000014819)	NDUFA11 (ENSODEG00000015123) #25	NRTN (ENSODEG00000014997) #27	DUS3L (ENSODEG00000015771) #28	PRR22 (ENSODEG00000015287)	LONP1 (ENSODEG00000015069) #29	ENSODEG00000017182 #30	MICOS13 (ENSODEG00000016327) #32	SAFB (ENSODEG00000014838) #33	SAFB2 (ENSODEG00000014751) #34	ENSODEG00000015112 #36	PTPRS (ENSODEG00000015678) #37	KDM4B (ENSODEG00000014383)
Guinea pig	MODERN SPECIES	229	ENSCPOG00000022803 #7	TUBB4A (ENSCPOG00000003237) #9	DENND1C (ENSCPOG00000003232) #10	CRB3 (ENSCPOG00000024888) #11	SLC25A23 (ENSCPOG00000011096) #12	SLC25A41 (ENSCPOG00000029988) #13	KHSRP (ENSCPOG00000005140) #14	GTF2F1 (ENSCPOG00000012632)	PSPN (ENSCPOG00000038963) #15	ALKBH7 (ENSCPOG00000013958) #16	CLPP (ENSCPOG00000013954) #17	ACER1 (ENSCPOG00000021961) #18	MLLT1 (ENSCPOG00000001260) #20	ENSCPOG00000025754	ENSCPOG00000014317 #21	RFX2 (ENSCPOG00000024260) #22	RANBP3 (ENSCPOG00000021646) #23	CAPS (ENSCPOG00000026058) #24	VMAC (ENSCPOG00000014675)	NDUFA11 (ENSCPOG00000019390) #25	ENSCPOG00000037079	ENSCPOG00000037083	NRTN (ENSCPOG00000037952) #27	DUS3L (ENSCPOG00000021236) #28	PRR22 (ENSCPOG00000031470)
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000008762	ENSHGLG00000041462	CD70 (ENSHGLG00000013155) #7	ENSHGLG00000021141	TNFSF14 (ENSHGLG00000041682)	GPR108 (ENSHGLG00000010354)	TRIP10 (ENSHGLG00000006018)	SH2D3A (ENSHGLG00000030969)	ENSHGLG00000007716	ENSHGLG00000011025 #18	MLLT1 (ENSHGLG00000011819) #20	ENSHGLG00000044003	ENSHGLG00000049237 #21	ENSHGLG00000014805	ENSHGLG00000044408	RFX2 (ENSHGLG00000015258) #22	RANBP3 (ENSHGLG00000015535) #23	CAPS (ENSHGLG00000033681) #24	ENSHGLG00000032314	ENSHGLG00000014115 #25	ENSHGLG00000044894 #26	ENSHGLG00000014195	ENSHGLG00000037047	ENSHGLG00000046495 #26	NRTN (ENSHGLG00000014364) #27	DUS3L (ENSHGLG00000013475) #28	PRR22 (ENSHGLG00000043073)	CATSPERD (ENSHGLG00000032633)	LONP1 (ENSHGLG00000013886) #29	ENSHGLG00000013869 #30	MICOS13 (ENSHGLG00000032110) #32
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.e #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.e #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Squirrel	MODERN SPECIES	188	ENSSTOG00000002404 #10	CRB3 (ENSSTOG00000029565) #11	SLC25A23 (ENSSTOG00000002387) #12	SLC25A41 (ENSSTOG00000023022) #13	KHSRP (ENSSTOG00000002371) #14	ENSSTOG00000032166	GTF2F1 (ENSSTOG00000025689)	PSPN (ENSSTOG00000023397) #15	ALKBH7 (ENSSTOG00000002368) #16	CLPP (ENSSTOG00000028013) #17	ACER1 (ENSSTOG00000002348) #18	ENSSTOG00000022476	MLLT1 (ENSSTOG00000002340) #20	ENSSTOG00000019704	ENSSTOG00000007511 #21	RFX2 (ENSSTOG00000027723) #22	ENSSTOG00000034262 #23	RANBP3 (ENSSTOG00000006462) #23	CAPS (ENSSTOG00000006493) #24	VMAC (ENSSTOG00000012822)	NDUFA11 (ENSSTOG00000028356) #25	ENSSTOG00000022255	NRTN (ENSSTOG00000009542) #27	DUS3L (ENSSTOG00000025017) #28	PRR22 (ENSSTOG00000025571)	LONP1 (ENSSTOG00000019884) #29	ENSSTOG00000020518 ##30	HSD11B1L (ENSSTOG00000027416) #31	MICOS13 (ENSSTOG00000002814) #32	SAFB (ENSSTOG00000002783) #33	ENSSTOG00000002758 #34
Arctic ground squirrel	MODERN SPECIES	301	TUBB4A (ENSUPAG00010023665) #9	DENND1C (ENSUPAG00010023662) #10	ENSUPAG00010023661 #11	SLC25A23 (ENSUPAG00010023660) #12	SLC25A41 (ENSUPAG00010023658) #13	KHSRP (ENSUPAG00010023657) #14	ENSUPAG00010023656	GTF2F1 (ENSUPAG00010023655)	PSPN (ENSUPAG00010023654) #15	ALKBH7 (ENSUPAG00010023653) #16	CLPP (ENSUPAG00010023652) #17	ACER1 (ENSUPAG00010023651) #18	MLLT1 (ENSUPAG00010023650) #20	ENSUPAG00010023649	ACSBG2 (ENSUPAG00010023648) #21	RFX2 (ENSUPAG00010023647) #22	RANBP3 (ENSUPAG00010023645) #23	CAPS (ENSUPAG00010023646) #24	VMAC (ENSUPAG00010023644)	ENSUPAG00010023643 #25	ENSUPAG00010023642	NRTN (ENSUPAG00010023641) #27	DUS3L (ENSUPAG00010023640) #28	PRR22 (ENSUPAG00010023639)	LONP1 (ENSUPAG00010023636) #29	RPL36 (ENSUPAG00010023635) #30	HSD11B1L (ENSUPAG00010023634) #31	MICOS13 (ENSUPAG00010023633) #32	SAFB (ENSUPAG00010023630) #33	SAFB2 (ENSUPAG00010023625) #34	ENSUPAG00010023624
Alpin marmot	MODERN SPECIES	88	TNFSF9 (ENSMMMG00000019570) #8	TUBB4A (ENSMMMG00000019550) #9	DENND1C (ENSMMMG00000019533) #10	ENSMMMG00000019517 #11	SLC25A23 (ENSMMMG00000019504) #12	SLC25A41 (ENSMMMG00000019493) #13	KHSRP (ENSMMMG00000019257) #14	ENSMMMG00000019249	PSPN (ENSMMMG00000019228) #15	ALKBH7 (ENSMMMG00000019225) #16	CLPP (ENSMMMG00000019216) #17	ACER1 (ENSMMMG00000019214) #18	MLLT1 (ENSMMMG00000019206) #20	ENSMMMG00000019196	ACSBG2 (ENSMMMG00000019139) #21	RFX2 (ENSMMMG00000019107) #22	ENSMMMG00000019101 #23	RANBP3 (ENSMMMG00000019085) #23	CAPS (ENSMMMG00000019062) #24	VMAC (ENSMMMG00000019061)	NDUFA11 (ENSMMMG00000019059) #25	NRTN (ENSMMMG00000019052) #27	DUS3L (ENSMMMG00000019016) #28	LONP1 (ENSMMMG00000018859) #29	HSD11B1L (ENSMMMG00000018842) #31	MICOS13 (ENSMMMG00000018836) #32	SAFB (ENSMMMG00000018807) #33	SAFB2 (ENSMMMG00000018701) #34	ENSMMMG00000018676 #37	ENSMMMG00000018660 #37	KDM4B (ENSMMMG00000018611)
Eurasian red squirrel	MODERN SPECIES	7	TUBB4A (ENSSVLG00005023819) #9	DENND1C (ENSSVLG00005023643) #10	CRB3 (ENSSVLG00005023581) #11	SLC25A23 (ENSSVLG00005023541) #12	SLC25A41 (ENSSVLG00005023479) #13	KHSRP (ENSSVLG00005023444) #14	ENSSVLG00005023383	GTF2F1 (ENSSVLG00005023301)	PSPN (ENSSVLG00005023279) #15	ALKBH7 (ENSSVLG00005023240) #16	CLPP (ENSSVLG00005023216) #17	ACER1 (ENSSVLG00005023163) #18	MLLT1 (ENSSVLG00005023111) #20	ENSSVLG00005022830	ACSBG2 (ENSSVLG00005022613) #21	RFX2 (ENSSVLG00005022368) #22	RANBP3 (ENSSVLG00005022208) #23	CAPS (ENSSVLG00005022099) #24	VMAC (ENSSVLG00005022064)	NDUFA11 (ENSSVLG00005022032) #25	ENSSVLG00005021990	NRTN (ENSSVLG00005021968) #27	DUS3L (ENSSVLG00005021792) #28	PRR22 (ENSSVLG00005021755)	LONP1 (ENSSVLG00005021189) #29	ENSSVLG00005021082 ##30	HSD11B1L (ENSSVLG00005020980) #31	MICOS13 (ENSSVLG00005020922) #32	SAFB (ENSSVLG00005020852) #33	SAFB2 (ENSSVLG00005020804) #34	ENSSVLG00005020769
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Kangaroo rat	MODERN SPECIES	383	Tnfsf14 (ENSDORG00000028843)	Tubb4a (ENSDORG00000030020) #9	ENSDORG00000029765 #10	Crb3 (ENSDORG00000002452) #11	Slc25a41 (ENSDORG00000002448) #13	Khsrp (ENSDORG00000002447) #14	Gm17949 (ENSDORG00000002446)	Gtf2f1 (ENSDORG00000002445)	Pspn (ENSDORG00000002443) #15	Alkbh7 (ENSDORG00000002441) #16	Clpp (ENSDORG00000002435) #17	Acer1 (ENSDORG00000013614) #18	Mllt1 (ENSDORG00000006056) #20	Acsbg3 (ENSDORG00000026047)	Acsbg2 (ENSDORG00000024853) #21	Rfx2 (ENSDORG00000008083) #22	Ranbp3 (ENSDORG00000003144) #23	ENSDORG00000003143 #24	Vmac (ENSDORG00000029939)	Ndufa11 (ENSDORG00000003140) #25	Dus3l (ENSDORG00000006754) #28	Lonp1 (ENSDORG00000016207) #29	Rpl36 (ENSDORG00000025864) ##30	ENSDORG00000016206 #31	Micos13 (ENSDORG00000016204) #32	Safb (ENSDORG00000016200) #33	Safb2 (ENSDORG00000016199) #34	Ptprs (ENSDORG00000006297) #37	Kdm4b (ENSDORG00000008375)	Uhrf1 (ENSDORG00000013642)	Arrdc5 (ENSDORG00000013640)
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Muroidea	ANCESTRAL SPECIES	32	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Chinese hamster chok1gshd	MODERN SPECIES	2	Tubb4a (ENSCGRG00001001011) #9	Dennd1c (ENSCGRG00001020022) #10	Crb3 (ENSCGRG00001021736) #11	Slc25a23 (ENSCGRG00001023449) #12	Slc25a41 (ENSCGRG00001000917) #13	Khsrp (ENSCGRG00001011031) #14	Gm17949 (ENSCGRG00001006952)	Gtf2f1 (ENSCGRG00001006209)	Pspn (ENSCGRG00001017826) #15	Alkbh7 (ENSCGRG00001019380) #16	Clpp (ENSCGRG00001019808) #17	Acer1 (ENSCGRG00001016857) #18	Mllt1 (ENSCGRG00001018607) #20	Acsbg3 (ENSCGRG00001021403)	Acsbg2 (ENSCGRG00001001208) #21	Rfx2 (ENSCGRG00001008783) #22	Prr22 (ENSCGRG00001022202)	Dus3l (ENSCGRG00001023361) #28	Nrtn (ENSCGRG00001024492) #27	ENSCGRG00001008918	Ndufa11 (ENSCGRG00001023471) #25	Vmac (ENSCGRG00001023793)	ENSCGRG00001021756 #24	Ranbp3 (ENSCGRG00001022677) #23	Catsperd (ENSCGRG00001010087)	Lonp1 (ENSCGRG00001021835) #29	ENSCGRG00001020793 #30	Safb (ENSCGRG00001002254) #33	Micos13 (ENSCGRG00001016715) #32	Safb2 (ENSCGRG00001015833) #34	Tincr (ENSCGRG00001024474)
Golden Hamster	MODERN SPECIES	730	Tubb4a (ENSMAUG00000017901) #9	Dennd1c (ENSMAUG00000006409) #10	Crb3 (ENSMAUG00000019988) #11	ENSMAUG00000000871 #12	Slc25a41 (ENSMAUG00000014724) #13	Khsrp (ENSMAUG00000018966) #14	Gm17949 (ENSMAUG00000018260)	ENSMAUG00000015346	Pspn (ENSMAUG00000019121) #15	Alkbh7 (ENSMAUG00000000800) #16	Clpp (ENSMAUG00000021469) #17	Acer1 (ENSMAUG00000012781) #18	Mllt1 (ENSMAUG00000011374) #20	Acsbg3 (ENSMAUG00000014035)	Acsbg2 (ENSMAUG00000017399) #21	Rfx2 (ENSMAUG00000018587) #22	Prr22 (ENSMAUG00000003201)	Dus3l (ENSMAUG00000008347) #28	Nrtn (ENSMAUG00000001043) #27	Ndufa11 (ENSMAUG00000021572) #25	Vmac (ENSMAUG00000009455)	ENSMAUG00000013827 #24	Ranbp3 (ENSMAUG00000011228) #23	Catsperd (ENSMAUG00000009178)	Lonp1 (ENSMAUG00000013293) #29	ENSMAUG00000018691 ##30	Safb2 (ENSMAUG00000011573) #34	Tincr (ENSMAUG00000006706)	Znrf4 (ENSMAUG00000008614) #36	Ptprs (ENSMAUG00000003364) #37	Kdm4b (ENSMAUG00000022140)
Cricetidae_B	ANCESTRAL SPECIES	27	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a.a.b ##30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837
Northern American deer mouse	MODERN SPECIES	14	Tubb4a (ENSPEMG00000028633) #9	Dennd1c (ENSPEMG00000023860) #10	Crb3 (ENSPEMG00000021919) #11	Slc25a23 (ENSPEMG00000021021) #12	Slc25a41 (ENSPEMG00000020675) #13	Khsrp (ENSPEMG00000022853) #14	Gm17949 (ENSPEMG00000026776)	Gtf2f1 (ENSPEMG00000011236)	Pspn (ENSPEMG00000008246) #15	Alkbh7 (ENSPEMG00000016536) #16	Clpp (ENSPEMG00000009546) #17	Acer1 (ENSPEMG00000021242) #18	Mllt1 (ENSPEMG00000020708) #20	Acsbg3 (ENSPEMG00000022840)	Acsbg2 (ENSPEMG00000014725) #21	Rfx2 (ENSPEMG00000021291) #22	Prr22 (ENSPEMG00000014824)	Dus3l (ENSPEMG00000020784) #28	Nrtn (ENSPEMG00000014960) #27	ENSPEMG00000031186	Ndufa11 (ENSPEMG00000020648) #25	ENSPEMG00000026816	ENSPEMG00000020906 #24	Ranbp3 (ENSPEMG00000020448) #23	Lonp1 (ENSPEMG00000020753) #29	ENSPEMG00000014036 ##30	Micos13 (ENSPEMG00000009993) #32	Safb (ENSPEMG00000020428) #33	Safb2 (ENSPEMG00000016015) #34	Tincr (ENSPEMG00000023023)	Znrf4 (ENSPEMG00000006665) #36
Prairie vole	MODERN SPECIES	181	Tubb4a (ENSMOCG00000015551) #9	ENSMOCG00000001187 #10	Crb3 (ENSMOCG00000000421) #11	Slc25a23 (ENSMOCG00000014701) #12	Slc25a41 (ENSMOCG00000013299) #13	Khsrp (ENSMOCG00000018305) #14	Gm17949 (ENSMOCG00000016801)	Gtf2f1 (ENSMOCG00000000296)	Pspn (ENSMOCG00000014015) #15	Alkbh7 (ENSMOCG00000004923) #16	Clpp (ENSMOCG00000015784) #17	Acer1 (ENSMOCG00000002295) #18	Mllt1 (ENSMOCG00000020318) #20	Acsbg3 (ENSMOCG00000008516)	Acsbg2 (ENSMOCG00000000050) #21	Rfx2 (ENSMOCG00000012338) #22	Prr22 (ENSMOCG00000007432)	Dus3l (ENSMOCG00000021796) #28	Nrtn (ENSMOCG00000015675) #27	ENSMOCG00000006283	ENSMOCG00000001594 #25	Vmac (ENSMOCG00000001137)	Ranbp3 (ENSMOCG00000000298) #23	Catsperd (ENSMOCG00000000634)	Lonp1 (ENSMOCG00000007391) #29	ENSMOCG00000013679 ##30	Micos13 (ENSMOCG00000005993) #32	Safb (ENSMOCG00000014040) #33	Safb2 (ENSMOCG00000006827) #34	Tincr (ENSMOCG00000016977)	Ptprs (ENSMOCG00000015299) #37
Murinae	ANCESTRAL SPECIES	38	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000162442 #24	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36
Mus	ANCESTRAL SPECIES	16	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00390000012434 #25	ENSGT00390000007212	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00390000012434.k #25	ENSGT00390000007212	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00390000012434.k #25	ENSGT00390000007212	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00390000012434.k #25	ENSGT00390000007212	ENSGT00940000158588 #23	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00390000002629 #32	ENSGT00940000161482 #34	ENSGT01010000222837	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37	ENSGT00940000159248
spretus	MODERN SPECIES	8	MGP_SPRETEiJ_G0022717	Tubb4a (MGP_SPRETEiJ_G0022716) #9	MGP_SPRETEiJ_G0022715 #10	Crb3 (MGP_SPRETEiJ_G0022714) #11	Slc25a23 (MGP_SPRETEiJ_G0022713) #12	Slc25a41 (MGP_SPRETEiJ_G0022712) #13	Khsrp (MGP_SPRETEiJ_G0022711) #14	Gtf2f1 (MGP_SPRETEiJ_G0022710)	Pspn (MGP_SPRETEiJ_G0022709) #15	Alkbh7 (MGP_SPRETEiJ_G0022708) #16	Clpp (MGP_SPRETEiJ_G0022707) #17	Acer1 (MGP_SPRETEiJ_G0022706) #18	Mllt1 (MGP_SPRETEiJ_G0022705) #20	Acsbg3 (MGP_SPRETEiJ_G0022704)	Acsbg2 (MGP_SPRETEiJ_G0022703) #21	Rfx2 (MGP_SPRETEiJ_G0022702) #22	Prr22 (MGP_SPRETEiJ_G0022701)	Dus3l (MGP_SPRETEiJ_G0022700) #28	Nrtn (MGP_SPRETEiJ_G0022699) #27	Ndufa11 (MGP_SPRETEiJ_G0022698) #25	Vmac (MGP_SPRETEiJ_G0022697)	Ranbp3 (MGP_SPRETEiJ_G0022696) #23	Catsperd (MGP_SPRETEiJ_G0022695)	Lonp1 (MGP_SPRETEiJ_G0022694) #29	MGP_SPRETEiJ_G0022693 #30	Micos13 (MGP_SPRETEiJ_G0022692) #32	MGP_SPRETEiJ_G0022691	Safb2 (MGP_SPRETEiJ_G0022690) #34	Znrf4 (MGP_SPRETEiJ_G0022689) #36	Ptprs (MGP_SPRETEiJ_G0022688) #37	Kdm4b (MGP_SPRETEiJ_G0022687)
Steppe mouse	MODERN SPECIES	2657	Tubb4a (ENSMSIG00000021731) #9	Dennd1c (ENSMSIG00000021743) #10	Crb3 (ENSMSIG00000021794) #11	Slc25a23 (ENSMSIG00000021822) #12	Slc25a41 (ENSMSIG00000021849) #13	Khsrp (ENSMSIG00000021874) #14	Gm17949 (ENSMSIG00000021931)	Gtf2f1 (ENSMSIG00000021940)	Pspn (ENSMSIG00000021975) #15	Alkbh7 (ENSMSIG00000021986) #16	Clpp (ENSMSIG00000022008) #17	Acer1 (ENSMSIG00000022023) #18	Mllt1 (ENSMSIG00000022050) #20	Acsbg3 (ENSMSIG00000022123)	Acsbg2 (ENSMSIG00000022144) #21	Rfx2 (ENSMSIG00000022188) #22	Prr22 (ENSMSIG00000022272)	Dus3l (ENSMSIG00000022291) #28	Nrtn (ENSMSIG00000022315) #27	ENSMSIG00000022323 #25	Vmac (ENSMSIG00000022334)	Ranbp3 (ENSMSIG00000022350) #23	Catsperd (ENSMSIG00000022478)	Lonp1 (ENSMSIG00000022544) #29	ENSMSIG00000022557 #30	ENSMSIG00000022566 #32
Mouse	MODERN SPECIES	8	Tubb4a (ENSMUSG00000062591) #9	Dennd1c (ENSMUSG00000002668) #10	Crb3 (ENSMUSG00000044279) #11	Slc25a23 (ENSMUSG00000046329) #12	Slc25a41 (ENSMUSG00000011486) #13	Khsrp (ENSMUSG00000007670) #14	Gm17949 (ENSMUSG00000109739)	Gtf2f1 (ENSMUSG00000002658)	Pspn (ENSMUSG00000002664) #15	Alkbh7 (ENSMUSG00000002661) #16	Clpp (ENSMUSG00000002660) #17	Acer1 (ENSMUSG00000045019) #18	Mllt1 (ENSMUSG00000024212) #20	Acsbg3 (ENSMUSG00000024209)	Acsbg2 (ENSMUSG00000024207) #21	Rfx2 (ENSMUSG00000024206) #22	Prr22 (ENSMUSG00000090273)	Dus3l (ENSMUSG00000007603) #28	Nrtn (ENSMUSG00000039481) #27	Ndufa11 (ENSMUSG00000002379) #25	Vmac (ENSMUSG00000054723)	Ranbp3 (ENSMUSG00000002372) #23	Catsperd (ENSMUSG00000040828)	Lonp1 (ENSMUSG00000041168) #29	Rpl36 (ENSMUSG00000057863) ##30	Micos13 (ENSMUSG00000049760) #32	Safb (ENSMUSG00000071054) #33	Safb2 (ENSMUSG00000042625) #34	Tincr (ENSMUSG00000110218)	Znrf4 (ENSMUSG00000044526) #36	Ptprs (ENSMUSG00000013236) #37
Ryukyu mouse	MODERN SPECIES	8	MGP_CAROLIEiJ_G0021806	Tubb4a (MGP_CAROLIEiJ_G0021805) #9	Dennd1c (MGP_CAROLIEiJ_G0021804) #10	Crb3 (MGP_CAROLIEiJ_G0021803) #11	Slc25a23 (MGP_CAROLIEiJ_G0021802) #12	Slc25a41 (MGP_CAROLIEiJ_G0021801) #13	Khsrp (MGP_CAROLIEiJ_G0021800) #14	Gtf2f1 (MGP_CAROLIEiJ_G0021799)	Pspn (MGP_CAROLIEiJ_G0021798) #15	Alkbh7 (MGP_CAROLIEiJ_G0021797) #16	Clpp (MGP_CAROLIEiJ_G0021796) #17	Acer1 (MGP_CAROLIEiJ_G0021795) #18	Mllt1 (MGP_CAROLIEiJ_G0021794) #20	Acsbg3 (MGP_CAROLIEiJ_G0021793)	Acsbg2 (MGP_CAROLIEiJ_G0021792) #21	Rfx2 (MGP_CAROLIEiJ_G0021791) #22	Prr22 (MGP_CAROLIEiJ_G0021790)	Dus3l (MGP_CAROLIEiJ_G0021789) #28	Nrtn (MGP_CAROLIEiJ_G0021788) #27	Ndufa11 (MGP_CAROLIEiJ_G0021787) #25	Vmac (MGP_CAROLIEiJ_G0021786)	Ranbp3 (MGP_CAROLIEiJ_G0021785) #23	Catsperd (MGP_CAROLIEiJ_G0021784)	Lonp1 (MGP_CAROLIEiJ_G0021783) #29	MGP_CAROLIEiJ_G0021782 #30	Micos13 (MGP_CAROLIEiJ_G0021781) #32	Safb (MGP_CAROLIEiJ_G0021780) #33	Safb2 (MGP_CAROLIEiJ_G0021779) #34	Znrf4 (MGP_CAROLIEiJ_G0021778) #36	Ptprs (MGP_CAROLIEiJ_G0021777) #37	Kdm4b (MGP_CAROLIEiJ_G0021776)
Shrew mouse	MODERN SPECIES	9	MGP_PahariEiJ_G0020795	Tubb4a (MGP_PahariEiJ_G0020794) #9	Dennd1c (MGP_PahariEiJ_G0020793) #10	Crb3 (MGP_PahariEiJ_G0020792) #11	Slc25a23 (MGP_PahariEiJ_G0020791) #12	Slc25a41 (MGP_PahariEiJ_G0020790) #13	Khsrp (MGP_PahariEiJ_G0020789) #14	Gtf2f1 (MGP_PahariEiJ_G0020788)	Pspn (MGP_PahariEiJ_G0020787) #15	Alkbh7 (MGP_PahariEiJ_G0020786) #16	Clpp (MGP_PahariEiJ_G0020785) #17	Acer1 (MGP_PahariEiJ_G0020784) #18	Mllt1 (MGP_PahariEiJ_G0020783) #20	Acsbg3 (MGP_PahariEiJ_G0020782)	Acsbg2 (MGP_PahariEiJ_G0020781) #21	Rfx2 (MGP_PahariEiJ_G0020780) #22	Prr22 (MGP_PahariEiJ_G0020779)	Dus3l (MGP_PahariEiJ_G0020778) #28	Nrtn (MGP_PahariEiJ_G0020777) #27	Ndufa11 (MGP_PahariEiJ_G0020776) #25	Vmac (MGP_PahariEiJ_G0020775)	Ranbp3 (MGP_PahariEiJ_G0020774) #23	Catsperd (MGP_PahariEiJ_G0020773)	Lonp1 (MGP_PahariEiJ_G0020772) #29	MGP_PahariEiJ_G0020771 #30	Micos13 (MGP_PahariEiJ_G0020770) #32	Safb (MGP_PahariEiJ_G0020769) #33	Safb2 (MGP_PahariEiJ_G0020768) #34	Znrf4 (MGP_PahariEiJ_G0020767) #36	Ptprs (MGP_PahariEiJ_G0020766) #37	Kdm4b (MGP_PahariEiJ_G0020765)
Rat	MODERN SPECIES	19	Tubb4a (ENSRNOG00000047505) #9	Dennd1c (ENSRNOG00000046050) #10	Crb3 (ENSRNOG00000070099) #11	Slc25a23 (ENSRNOG00000047781) #12	Slc25a41 (ENSRNOG00000048853) #13	Khsrp (ENSRNOG00000047628) #14	Gm17949 (ENSRNOG00000064877)	Gtf2f1 (ENSRNOG00000047134)	Pspn (ENSRNOG00000071190) #15	Alkbh7 (ENSRNOG00000047089) #16	Clpp (ENSRNOG00000047052) #17	Acer1 (ENSRNOG00000047368) #18	Mllt1 (ENSRNOG00000048736) #20	Acsbg3 (ENSRNOG00000047549)	Acsbg2 (ENSRNOG00000045947) #21	Rfx2 (ENSRNOG00000045846) #22	Prr22 (ENSRNOG00000047295)	Dus3l (ENSRNOG00000050381) #28	Nrtn (ENSRNOG00000048651) #27	Ndufa11 (ENSRNOG00000048320) #25	Vmac (ENSRNOG00000065863)	Caps (ENSRNOG00000063246) #24	Ranbp3 (ENSRNOG00000049785) #23	Catsperd (ENSRNOG00000048818)	Lonp1 (ENSRNOG00000046502) #29	Micos13 (ENSRNOG00000046002) #32	Safb (ENSRNOG00000050543) #33	Safb2 (ENSRNOG00000049511) #34	Znrf4 (ENSRNOG00000048875) #36	Ptprs (ENSRNOG00000047247) #37	Kdm4b (ENSRNOG00000049221)
Upper Galilee mountains blind mole rat	MODERN SPECIES	975	Tnfsf14 (ENSNGAG00000023106)	Cd70 (ENSNGAG00000013982) #7	Tubb4a (ENSNGAG00000019498) #9	Dennd1c (ENSNGAG00000015322) #10	Crb3 (ENSNGAG00000023048) #11	Slc25a23 (ENSNGAG00000023065) #12	Slc25a41 (ENSNGAG00000019185) #13	Khsrp (ENSNGAG00000023093) #14	Gm17949 (ENSNGAG00000023078)	Gtf2f1 (ENSNGAG00000023277)	Pspn (ENSNGAG00000022337) #15	Alkbh7 (ENSNGAG00000018037) #16	Clpp (ENSNGAG00000020943) #17	Acer1 (ENSNGAG00000021750) #18	Mllt1 (ENSNGAG00000015361) #20	Rfx2 (ENSNGAG00000018829) #22	Prr22 (ENSNGAG00000023052)	Dus3l (ENSNGAG00000017157) #28	Nrtn (ENSNGAG00000021333) #27	Ndufa11 (ENSNGAG00000017779) #25	Vmac (ENSNGAG00000016642)	Ranbp3 (ENSNGAG00000015130) #23	Catsperd (ENSNGAG00000021716)	Lonp1 (ENSNGAG00000018118) #29	ENSNGAG00000021002 #30	ENSNGAG00000022750 #31	ENSNGAG00000021672 #32	Safb (ENSNGAG00000019882) #33	ENSNGAG00000018473 #34	Tincr (ENSNGAG00000021324)	Ptprs (ENSNGAG00000019407) #37
Lesser Egyptian jerboa	MODERN SPECIES	55	Tubb4a (ENSJJAG00000001103) #9	ENSJJAG00000023239 #10	Crb3 (ENSJJAG00000017361) #11	Slc25a23 (ENSJJAG00000018390) #12	Slc25a41 (ENSJJAG00000009731) #13	Khsrp (ENSJJAG00000006370) #14	Gm17949 (ENSJJAG00000017204)	Gtf2f1 (ENSJJAG00000016614)	Pspn (ENSJJAG00000023140) #15	Alkbh7 (ENSJJAG00000023908) #16	ENSJJAG00000019233 #17	Acer1 (ENSJJAG00000018285) #18	Mllt1 (ENSJJAG00000017227) #20	Acsbg3 (ENSJJAG00000021099)	Acsbg2 (ENSJJAG00000022623) #21	Rfx2 (ENSJJAG00000009362) #22	Prr22 (ENSJJAG00000020858)	Dus3l (ENSJJAG00000023742) #28	Nrtn (ENSJJAG00000016578) #27	Ndufa11 (ENSJJAG00000023264) #25	Vmac (ENSJJAG00000021312)	ENSJJAG00000017779 #24	Ranbp3 (ENSJJAG00000007163) #23	Lonp1 (ENSJJAG00000021237) #29	ENSJJAG00000020144 ##30	ENSJJAG00000023960 #32	Safb (ENSJJAG00000009021) #33	ENSJJAG00000015942 #34	Tincr (ENSJJAG00000015733)	Znrf4 (ENSJJAG00000015898) #36	Ptprs (ENSJJAG00000022069) #37
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00390000011943.a.a.a.a ##30	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Canidae	ANCESTRAL SPECIES		ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00390000011943.a.a.a.a ##30	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00390000011943.a.a.a.a ##30	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Dog	MODERN SPECIES	12	TUBB4A (ENSCAFG00845010611) #9	DENND1C (ENSCAFG00845010702) #10	CRB3 (ENSCAFG00845010829) #11	SLC25A23 (ENSCAFG00845010879) #12	SLC25A41 (ENSCAFG00845010943) #13	KHSRP (ENSCAFG00845011000) #14	ENSCAFG00845011160	GTF2F1 (ENSCAFG00845011192)	PSPN (ENSCAFG00845011239) #15	ALKBH7 (ENSCAFG00845011262) #16	CLPP (ENSCAFG00845011300) #17	ACER1 (ENSCAFG00845011353) #18	MLLT1 (ENSCAFG00845011430) #20	ENSCAFG00845011637	ACSBG2 (ENSCAFG00845011716) #21	RFX2 (ENSCAFG00845011818) #22	RANBP3 (ENSCAFG00845012047) #23	CAPS (ENSCAFG00845012225) #24	NDUFA11 (ENSCAFG00845012269) #25	FUT5 (ENSCAFG00845012290)	NRTN (ENSCAFG00845012314) #27	ENSCAFG00845012403 #27	DUS3L (ENSCAFG00845012465) #28	PRR22 (ENSCAFG00845012648)	LONP1 (ENSCAFG00845012796) #29	ENSCAFG00845012967 #30	HSD11B1L (ENSCAFG00845013008) #31	MICOS13 (ENSCAFG00845013062) #32	SAFB (ENSCAFG00845013214) #33	SAFB2 (ENSCAFG00845013411) #34	ENSCAFG00845013596 #36
Dingo	MODERN SPECIES	112	CRB3 (ENSCAFG00020019301) #11	SLC25A23 (ENSCAFG00020019295) #12	SLC25A41 (ENSCAFG00020019291) #13	KHSRP (ENSCAFG00020019133) #14	ENSCAFG00020019100	GTF2F1 (ENSCAFG00020019099)	PSPN (ENSCAFG00020019098) #15	ALKBH7 (ENSCAFG00020019096) #16	CLPP (ENSCAFG00020019094) #17	ACER1 (ENSCAFG00020019092) #18	MLLT1 (ENSCAFG00020019087) #20	ENSCAFG00020019056	ENSCAFG00020019051	ENSCAFG00020019050 #21	ENSCAFG00020019048 #21	RFX2 (ENSCAFG00020019038) #22	RANBP3 (ENSCAFG00020019018) #23	CAPS (ENSCAFG00020019013) #24	VMAC (ENSCAFG00020019007)	NDUFA11 (ENSCAFG00020019004) #25	ENSCAFG00020019002	ENSCAFG00020018996 #27	ENSCAFG00020018993	ENSCAFG00020018986 #27	ENSCAFG00020018983 #27	DUS3L (ENSCAFG00020018976) #28	PRR22 (ENSCAFG00020018973)	CATSPERD (ENSCAFG00020018972)	ENSCAFG00020018966 ##30	LONP1 (ENSCAFG00020018954) #29	HSD11B1L (ENSCAFG00020018952) #31
Red fox	MODERN SPECIES	278	ENSVVUG00000026690 #9	DENND1C (ENSVVUG00000026697) #10	CRB3 (ENSVVUG00000026716) #11	SLC25A23 (ENSVVUG00000026718) #12	SLC25A41 (ENSVVUG00000026725) #13	KHSRP (ENSVVUG00000026737) #14	ENSVVUG00000026889	GTF2F1 (ENSVVUG00000026891)	PSPN (ENSVVUG00000026892) #15	ALKBH7 (ENSVVUG00000026894) #16	CLPP (ENSVVUG00000026895) #17	ACER1 (ENSVVUG00000026897) #18	MLLT1 (ENSVVUG00000026899) #20	ENSVVUG00000026901	ACSBG2 (ENSVVUG00000026905) #21	RFX2 (ENSVVUG00000026908) #22	RANBP3 (ENSVVUG00000026909) #23	VMAC (ENSVVUG00000026915)	NDUFA11 (ENSVVUG00000026918) #25
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Ursus	ANCESTRAL SPECIES	16	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00950000185519	ENSGT00940000155332.A.v #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT00940000163061 #36
American black bear	MODERN SPECIES	4632																RFX2 (ENSUAMG00000022718) #22	RANBP3 (ENSUAMG00000022717) #23	VMAC (ENSUAMG00000022715)	NDUFA11 (ENSUAMG00000022714) #25
Polar bear	MODERN SPECIES	455	ENSUMAG00000011240 #8	TUBB4A (ENSUMAG00000011205) #9	DENND1C (ENSUMAG00000011179) #10	SLC25A23 (ENSUMAG00000011176) #12	SLC25A41 (ENSUMAG00000011173) #13	KHSRP (ENSUMAG00000011144) #14	ENSUMAG00000011130	ENSUMAG00000011125	ALKBH7 (ENSUMAG00000011121) #16	CLPP (ENSUMAG00000011118) #17	ACER1 (ENSUMAG00000011114) #18	MLLT1 (ENSUMAG00000011106) #20	ENSUMAG00000011083	ENSUMAG00000011074	ACSBG2 (ENSUMAG00000011013) #21	RFX2 (ENSUMAG00000010908) #22	RANBP3 (ENSUMAG00000010878) #23	CAPS (ENSUMAG00000010864) #24	NDUFA11 (ENSUMAG00000010857) #25	ENSUMAG00000010843	DUS3L (ENSUMAG00000010831) #28	ENSUMAG00000010828	CATSPERD (ENSUMAG00000010820)	LONP1 (ENSUMAG00000010376) #29	HSD11B1L (ENSUMAG00000010290) #31	ENSUMAG00000010279 #32	SAFB (ENSUMAG00000009734) #33	SAFB2 (ENSUMAG00000009585) #34	PTPRS (ENSUMAG00000009076) #37	KDM4B (ENSUMAG00000008806)	UHRF1 (ENSUMAG00000008785)
Giant Panda	MODERN SPECIES	14	TUBB4A (ENSAMEG00000029200) #9	DENND1C (ENSAMEG00000007101) #10	CRB3 (ENSAMEG00000007097) #11	SLC25A23 (ENSAMEG00000007035) #12	SLC25A41 (ENSAMEG00000007032) #13	KHSRP (ENSAMEG00000006978) #14	ENSAMEG00000006968	GTF2F1 (ENSAMEG00000006933)	PSPN (ENSAMEG00000006930) #15	ALKBH7 (ENSAMEG00000006925) #16	CLPP (ENSAMEG00000029863) #17	ACER1 (ENSAMEG00000023660) #18	MLLT1 (ENSAMEG00000006860) #20	ENSAMEG00000006856	ACSBG2 (ENSAMEG00000006804) #21	RFX2 (ENSAMEG00000007745) #22	CAPS (ENSAMEG00000007894) #24	VMAC (ENSAMEG00000007913)	RANBP3 (ENSAMEG00000007819) #23	ENSAMEG00000018817	NRTN (ENSAMEG00000028449) #27	DUS3L (ENSAMEG00000012423) #28	PRR22 (ENSAMEG00000030882)	CATSPERD (ENSAMEG00000012399)	RPL36 (ENSAMEG00000012349) ##30	LONP1 (ENSAMEG00000012350) #29	HSD11B1L (ENSAMEG00000012322) #31	MICOS13 (ENSAMEG00000012320) #32	ENSAMEG00000012254 #33	SAFB2 (ENSAMEG00000012146) #34	ENSAMEG00000027102 #36
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT00940000163061 #36
American mink	MODERN SPECIES	175	DENND1C (ENSNVIG00000015781) #10	CRB3 (ENSNVIG00000015751) #11	SLC25A23 (ENSNVIG00000015735) #12	SLC25A41 (ENSNVIG00000015722) #13	KHSRP (ENSNVIG00000015567) #14	ENSNVIG00000015514	GTF2F1 (ENSNVIG00000015498)	PSPN (ENSNVIG00000015490) #15	ENSNVIG00000015472 #17	ALKBH7 (ENSNVIG00000015449) #16	ENSNVIG00000015434 #17	ACER1 (ENSNVIG00000015426) #18	MLLT1 (ENSNVIG00000015422) #20	ENSNVIG00000015289	ACSBG2 (ENSNVIG00000015209) #21	RFX2 (ENSNVIG00000015069) #22	RANBP3 (ENSNVIG00000014853) #23	CAPS (ENSNVIG00000014785) #24	VMAC (ENSNVIG00000014779)	NDUFA11 (ENSNVIG00000014768) #25	NRTN (ENSNVIG00000014759) #27	DUS3L (ENSNVIG00000014698) #28	PRR22 (ENSNVIG00000014685)	CATSPERD (ENSNVIG00000014650)	LONP1 (ENSNVIG00000014515) #29	RL36 (ENSNVIG00000014479) ##30	HSD11B1L (ENSNVIG00000014427) #31	MICOS13 (ENSNVIG00000014403) #32	SAFB (ENSNVIG00000014214) #33	SAFB2 (ENSNVIG00000014161) #34	PTPRS (ENSNVIG00000009241) #37
Ferret	MODERN SPECIES	326	CD70 (ENSMPUG00000006973) #7	TNFSF9 (ENSMPUG00000006964) #8	TUBB4A (ENSMPUG00000006958) #9	DENND1C (ENSMPUG00000006946) #10	CRB3 (ENSMPUG00000006930) #11	SLC25A23 (ENSMPUG00000006918) #12	SLC25A41 (ENSMPUG00000006890) #13	KHSRP (ENSMPUG00000006615) #14	ENSMPUG00000006584	GTF2F1 (ENSMPUG00000006566)	CLPP (ENSMPUG00000006553) #17	ACER1 (ENSMPUG00000006546) #18	MLLT1 (ENSMPUG00000006527) #20	ENSMPUG00000006513	ACSBG2 (ENSMPUG00000006350) #21	RFX2 (ENSMPUG00000006329) #22	RANBP3 (ENSMPUG00000006306) #23	ENSMPUG00000019705	CAPS (ENSMPUG00000006269) #24	VMAC (ENSMPUG00000006261)	NDUFA11 (ENSMPUG00000006200) #25	DUS3L (ENSMPUG00000006188) #28	CATSPERD (ENSMPUG00000006175)	ENSMPUG00000006166 #30	LONP1 (ENSMPUG00000006156) #29	HSD11B1L (ENSMPUG00000006146) #31	MICOS13 (ENSMPUG00000006136) #32	SAFB (ENSMPUG00000006123) #33	SAFB2 (ENSMPUG00000006106) #34	ZNRF4 (ENSMPUG00000019704) #36	ENSMPUG00000006102
Felidae	ANCESTRAL SPECIES	21	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.b #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.a #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Panthera	ANCESTRAL SPECIES	15	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.b #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.a #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01030000234949
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a.b #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.a #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01030000234949
leopard	MODERN SPECIES	134	ENSPPRG00000011364 #9	DENND1C (ENSPPRG00000011124) #10	CRB3 (ENSPPRG00000009994) #11	ENSPPRG00000008866 #11	SLC25A23 (ENSPPRG00000008786) #12	SLC25A41 (ENSPPRG00000008078) #13	KHSRP (ENSPPRG00000008001) #14	GTF2F1 (ENSPPRG00000007816)	PSPN (ENSPPRG00000007687) #15	ALKBH7 (ENSPPRG00000007447) #16	ENSPPRG00000007143	ACER1 (ENSPPRG00000007111) #18	MLLT1 (ENSPPRG00000006767) #20	ENSPPRG00000006490	ACSBG2 (ENSPPRG00000006197) #21	RFX2 (ENSPPRG00000004939) #22	RANBP3 (ENSPPRG00000004053) #23	CAPS (ENSPPRG00000002279) #24	VMAC (ENSPPRG00000001830)	NDUFA11 (ENSPPRG00000001722) #25	NRTN (ENSPPRG00000000950) #27	DUS3L (ENSPPRG00000000633) #28	PRR22 (ENSPPRG00000000087)	CATSPERD (ENSPPRG00000022721)	LONP1 (ENSPPRG00000023054) #29	ENSPPRG00000024592 #30	HSD11B1L (ENSPPRG00000024694) #31	ENSPPRG00000018391 #32	SAFB (ENSPPRG00000017197) #33	SAFB2 (ENSPPRG00000011310) #34	PTPRS (ENSPPRG00000011000) #37
lion	MODERN SPECIES	2	CD70 (ENSPLOG00000008810) #7	TUBB4A (ENSPLOG00000008766) #9	DENND1C (ENSPLOG00000008616) #10	CRB3 (ENSPLOG00000008561) #11	SLC25A23 (ENSPLOG00000008518) #12	SLC25A41 (ENSPLOG00000008462) #13	KHSRP (ENSPLOG00000008352) #14	GTF2F1 (ENSPLOG00000008314)	PSPN (ENSPLOG00000008290) #15	ALKBH7 (ENSPLOG00000008230) #16	CLPP (ENSPLOG00000008162) #17	ACER1 (ENSPLOG00000008130) #18	MLLT1 (ENSPLOG00000008040) #20	ENSPLOG00000007717	ACSBG2 (ENSPLOG00000007544) #21	RFX2 (ENSPLOG00000007424) #22	RANBP3 (ENSPLOG00000007325) #23	CAPS (ENSPLOG00000007257) #24	VMAC (ENSPLOG00000007244)	NDUFA11 (ENSPLOG00000007217) #25	NRTN (ENSPLOG00000007186) #27	DUS3L (ENSPLOG00000007145) #28	PRR22 (ENSPLOG00000007098)	ENSPLOG00000007082	ENSPLOG00000007018 ##30	HSD11B1L (ENSPLOG00000006970) #31	ENSPLOG00000006936 #32	SAFB (ENSPLOG00000006879) #33	SAFB2 (ENSPLOG00000006781) #34	TINCR (ENSPLOG00000006745)	ENSPLOG00000006724 #36
Tiger	MODERN SPECIES	54	TRIP10 (ENSPTIG00000009104)	GPR108 (ENSPTIG00000012912)	ENSPTIG00000015516	ENSPTIG00000010121	TNFSF14 (ENSPTIG00000013537)	ENSPTIG00000014863	DENND1C (ENSPTIG00000015765) #10	SLC25A23 (ENSPTIG00000020081) #12	SLC25A41 (ENSPTIG00000020410) #13	GTF2F1 (ENSPTIG00000004277)	ENSPTIG00000006413 #16	ENSPTIG00000007112	ACER1 (ENSPTIG00000007573) #18	MLLT1 (ENSPTIG00000008740) #20	ACSBG2 (ENSPTIG00000010163) #21	RFX2 (ENSPTIG00000013487) #22	RANBP3 (ENSPTIG00000016728) #23	CAPS (ENSPTIG00000021210) #24	ENSPTIG00000021327	ENSPTIG00000021644 #25	ENSPTIG00000021748	CATSPERD (ENSPTIG00000002842)	LONP1 (ENSPTIG00000007357) #29	ENSPTIG00000012120 ##30	ENSPTIG00000012707	MICOS13 (ENSPTIG00000012971) #32	SAFB2 (ENSPTIG00000015120) #34	ENSPTIG00000017107	KDM4B (ENSPTIG00000017400)	ENSPTIG00000019733	ARRDC5 (ENSPTIG00000001979)
Cat	MODERN SPECIES	1	CD70 (ENSFCAG00000028989) #7	TNFSF9 (ENSFCAG00000038600) #8	TUBB4A (ENSFCAG00000010269) #9	DENND1C (ENSFCAG00000012514) #10	CRB3 (ENSFCAG00000041058) #11	SLC25A41 (ENSFCAG00000025463) #13	KHSRP (ENSFCAG00000003731) #14	GTF2F1 (ENSFCAG00000012512)	PSPN (ENSFCAG00000043004) #15	ALKBH7 (ENSFCAG00000012510) #16	CLPP (ENSFCAG00000012509) #17	ACER1 (ENSFCAG00000040566) #18	MLLT1 (ENSFCAG00000023537) #20	ENSFCAG00000027464	ACSBG2 (ENSFCAG00000012505) #21	RFX2 (ENSFCAG00000012504) #22	RANBP3 (ENSFCAG00000012502) #23	ENSFCAG00000045490 #24	NDUFA11 (ENSFCAG00000016347) #25	ENSFCAG00000025259	NRTN (ENSFCAG00000045492) #27	DUS3L (ENSFCAG00000027534) #28	CATSPERD (ENSFCAG00000015603)	RPL36 (ENSFCAG00000011838) #30	HSD11B1L (ENSFCAG00000011837) #31	ENSFCAG00000011836 #32	SAFB (ENSFCAG00000011835) #33	SAFB2 (ENSFCAG00000011834) #34	LONP1 (ENSFCAG00000011839) #29	TINCR (ENSFCAG00000043020)	ZNRF4 (ENSFCAG00000042643) #36
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Equus	ANCESTRAL SPECIES	34	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000164043	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Horse	MODERN SPECIES	28	DENND1C (ENSECAG00000010964) #10	CRB3 (ENSECAG00000010143) #11	SLC25A23 (ENSECAG00000020970) #12	SLC25A41 (ENSECAG00000018003) #13	KHSRP (ENSECAG00000018305) #14	ENSECAG00000016799	GTF2F1 (ENSECAG00000000246)	PSPN (ENSECAG00000001763) #15	ALKBH7 (ENSECAG00000023627) #16	CLPP (ENSECAG00000023054) #17	ACER1 (ENSECAG00000022733) #18	MLLT1 (ENSECAG00000015555) #20	ENSECAG00000029780	ENSECAG00000047643	ACSBG2 (ENSECAG00000017087) #21	RFX2 (ENSECAG00000020379) #22	RANBP3 (ENSECAG00000024789) #23	ENSECAG00000052631 #24	ENSECAG00000059799 #25	ENSECAG00000033689	NRTN (ENSECAG00000039189) #27	ENSECAG00000019359	CATSPERD (ENSECAG00000011401)	RPL36 (ENSECAG00000036419) #30	HSD11B1L (ENSECAG00000014443) #31	LONP1 (ENSECAG00000014761) #29	MICOS13 (ENSECAG00000012658) #32	SAFB (ENSECAG00000018659) #33	SAFB2 (ENSECAG00000018978) #34	ZNRF4 (ENSECAG00000034500) #36	PTPRS (ENSECAG00000032438) #37
Donkey	MODERN SPECIES	12	CD70 (ENSEASG00005000353) #7	TNFSF9 (ENSEASG00005028605) #8	TUBB4A (ENSEASG00005027092) #9	DENND1C (ENSEASG00005000214) #10	CRB3 (ENSEASG00005030191) #11	SLC25A23 (ENSEASG00005000075) #12	SLC25A41 (ENSEASG00005023116) #13	ENSEASG00005028550	GTF2F1 (ENSEASG00005023112)	PSPN (ENSEASG00005023110) #15	ALKBH7 (ENSEASG00005027385) #16	CLPP (ENSEASG00005023108) #17	ACER1 (ENSEASG00005023107) #18	MLLT1 (ENSEASG00005023105) #20	ACSBG2 (ENSEASG00005023104) #21	RFX2 (ENSEASG00005023101) #22	RANBP3 (ENSEASG00005023100) #23	ENSEASG00005036092 #24	VMAC (ENSEASG00005035944)	ENSEASG00005029851 #25	ENSEASG00005023096	NRTN (ENSEASG00005023095) #27	DUS3L (ENSEASG00005023094) #28	PRR22 (ENSEASG00005028262)	CATSPERD (ENSEASG00005023093)	LONP1 (ENSEASG00005023062) #29	ENSEASG00005023046 ##30	HSD11B1L (ENSEASG00005023044) #31	MICOS13 (ENSEASG00005028016) #32	SAFB (ENSEASG00005023019) #33	ENSEASG00005022952 #34
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.w #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01030000234949
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.w #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01030000234949
Greater horseshoe bat	MODERN SPECIES	9	TNFSF9 (ENSRFEG00010014511) #8	TUBB4A (ENSRFEG00010014530) #9	DENND1C (ENSRFEG00010014718) #10	CRB3 (ENSRFEG00010014851) #11	SLC25A23 (ENSRFEG00010014934) #12	KHSRP (ENSRFEG00010015266) #14	ENSRFEG00010015355	GTF2F1 (ENSRFEG00010015531)	PSPN (ENSRFEG00010015585) #15	ALKBH7 (ENSRFEG00010015638) #16	CLPP (ENSRFEG00010015771) #17	ACER1 (ENSRFEG00010015824) #18	MLLT1 (ENSRFEG00010015888) #20	ENSRFEG00010015957 #21	ENSRFEG00010016123 #21	RFX2 (ENSRFEG00010016196) #22	RANBP3 (ENSRFEG00010016304) #23	CAPS (ENSRFEG00010016476) #24	VMAC (ENSRFEG00010016520)	NDUFA11 (ENSRFEG00010016557) #25	NRTN (ENSRFEG00010016659) #27	DUS3L (ENSRFEG00010016695) #28	CATSPERD (ENSRFEG00010016860)	LONP1 (ENSRFEG00010016908) #29	ENSRFEG00010017304 #30	HSD11B1L (ENSRFEG00010017351) #31	ENSRFEG00010017630 #32	SAFB (ENSRFEG00010017693) #33	SAFB2 (ENSRFEG00010017805) #34	TINCR (ENSRFEG00010017931)	ZNRF4 (ENSRFEG00010017958) #36
Microbat	MODERN SPECIES	1278	CD70 (ENSMLUG00000007323) #7	ENSMLUG00000022835	TNFSF9 (ENSMLUG00000011161) #8	TUBB4A (ENSMLUG00000015607) #9	DENND1C (ENSMLUG00000015589) #10	CRB3 (ENSMLUG00000015582) #11	SLC25A41 (ENSMLUG00000015564) #13	SLC25A23 (ENSMLUG00000015572) #12	KHSRP (ENSMLUG00000015543) #14	GTF2F1 (ENSMLUG00000015530)	PSPN (ENSMLUG00000015527) #15	CLPP (ENSMLUG00000007981) #17	ENSMLUG00000014237 #18	MLLT1 (ENSMLUG00000014230) #20	ACSBG2 (ENSMLUG00000014216) #21	RFX2 (ENSMLUG00000017439) #22	ENSMLUG00000014888 #23	CAPS (ENSMLUG00000014884) #24	VMAC (ENSMLUG00000014883)	NDUFA11 (ENSMLUG00000027443) #25	NRTN (ENSMLUG00000007178) #27	DUS3L (ENSMLUG00000007159) #28	PRR22 (ENSMLUG00000023220)	CATSPERD (ENSMLUG00000001114)	LONP1 (ENSMLUG00000001100) #29	HSD11B1L (ENSMLUG00000024618) #31	MICOS13 (ENSMLUG00000028421) #32	SAFB (ENSMLUG00000001081) #33	SAFB2 (ENSMLUG00000001050) #34	PTPRS (ENSMLUG00000005087) #37
Megabat	MODERN SPECIES	3526																RFX2 (ENSPVAG00000003357) #22
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Suina	ANCESTRAL SPECIES	16	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Chacoan peccary	MODERN SPECIES	770	CD70 (ENSCWAG00000008679) #7	TNFSF9 (ENSCWAG00000008641) #8	TUBB4A (ENSCWAG00000008574) #9	DENND1C (ENSCWAG00000008209) #10	CRB3 (ENSCWAG00000008071) #11	SLC25A23 (ENSCWAG00000007971) #12	SLC25A41 (ENSCWAG00000007889) #13	KHSRP (ENSCWAG00000017455) #14	GTF2F1 (ENSCWAG00000017421)	PSPN (ENSCWAG00000017389) #15	ALKBH7 (ENSCWAG00000017346) #16	CLPP (ENSCWAG00000017303) #17	ACER1 (ENSCWAG00000017254) #18	MLLT1 (ENSCWAG00000017206) #20	ACSBG2 (ENSCWAG00000016992) #21	RFX2 (ENSCWAG00000016768) #22	RANBP3 (ENSCWAG00000016644) #23	CAPS (ENSCWAG00000016575) #24	VMAC (ENSCWAG00000016538)	NDUFA11 (ENSCWAG00000016483) #25	ENSCWAG00000016466	NRTN (ENSCWAG00000016434) #27	DUS3L (ENSCWAG00000016362) #28	PRR22 (ENSCWAG00000016306)	CATSPERD (ENSCWAG00000016184)	LONP1 (ENSCWAG00000015932) #29	RPL36 (ENSCWAG00000015898) #30	HSD11B1L (ENSCWAG00000015779) #31	MICOS13 (ENSCWAG00000015741) #32	SAFB (ENSCWAG00000015662) #33	SAFB2 (ENSCWAG00000015621) #34
Pig	MODERN SPECIES	10	CD70 (ENSSSCG00000031115) #7	TNFSF9 (ENSSSCG00000022370) #8	TUBB4A (ENSSSCG00000013545) #9	DENND1C (ENSSSCG00000013546) #10	CRB3 (ENSSSCG00000051897) #11	SLC25A23 (ENSSSCG00000013550) #12	SLC25A41 (ENSSSCG00000032785) #13	KHSRP (ENSSSCG00000013538) #14	GTF2F1 (ENSSSCG00000013539)	ALKBH7 (ENSSSCG00000024254) #16	PSPN (ENSSSCG00000013540) #15	CLPP (ENSSSCG00000038079) #17	ACER1 (ENSSSCG00000023969) #18	MLLT1 (ENSSSCG00000013534) #20	ACSBG2 (ENSSSCG00000013536) #21	RFX2 (ENSSSCG00000035403) #22	RANBP3 (ENSSSCG00000013533) #23	CAPS (ENSSSCG00000013532) #24	VMAC (ENSSSCG00000031764)	NDUFA11 (ENSSSCG00000027307) #25	ENSSSCG00000013530	NRTN (ENSSSCG00000033413) #27	DUS3L (ENSSSCG00000040968) #28	CATSPERD (ENSSSCG00000013527)	LONP1 (ENSSSCG00000027128) #29	RPL36 (ENSSSCG00000059007) #30	HSD11B1L (ENSSSCG00000030546) #31	MICOS13 (ENSSSCG00000013524) #32	SAFB (ENSSSCG00000013522) #33	SAFB2 (ENSSSCG00000013523) #34	TINCR (ENSSSCG00000042523)
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000006744 #7	ENSGT00390000006244 #8	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163389 #26	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Narwhal	MODERN SPECIES	298	CD70 (ENSMMNG00015016394) #7	TNFSF9 (ENSMMNG00015016367) #8	TUBB4A (ENSMMNG00015016340) #9	DENND1C (ENSMMNG00015016214) #10	CRB3 (ENSMMNG00015016166) #11	SLC25A23 (ENSMMNG00015016105) #12	KHSRP (ENSMMNG00015015884) #14	ENSMMNG00015015791	GTF2F1 (ENSMMNG00015015754)	PSPN (ENSMMNG00015015733) #15	ALKBH7 (ENSMMNG00015015715) #16	CLPP (ENSMMNG00015015685) #17	ACER1 (ENSMMNG00015015665) #18	MLLT1 (ENSMMNG00015015635) #20	ACSBG2 (ENSMMNG00015004690) #21	RFX2 (ENSMMNG00015004665) #22	RANBP3 (ENSMMNG00015004623) #23	CAPS (ENSMMNG00015004589) #24	VMAC (ENSMMNG00015004582)	NDUFA11 (ENSMMNG00015004575) #25	ENSMMNG00015004569 #26	NRTN (ENSMMNG00015004563) #27	DUS3L (ENSMMNG00015004546) #28	PRR22 (ENSMMNG00015004516)	CATSPERD (ENSMMNG00015004484)	LONP1 (ENSMMNG00015004413) #29	RPL36 (ENSMMNG00015004368) #30	HSD11B1L (ENSMMNG00015004344) #31	MICOS13 (ENSMMNG00015004313) #32	SAFB (ENSMMNG00015004266) #33	SAFB2 (ENSMMNG00015004188) #34
Beluga whale	MODERN SPECIES	62	ENSDLEG00000013807 #8	TUBB4A (ENSDLEG00000013810) #9	ENSDLEG00000013828 #10	ENSDLEG00000013892 #10	CRB3 (ENSDLEG00000013951) #11	SLC25A23 (ENSDLEG00000013960) #12	KHSRP (ENSDLEG00000013980) #14	ENSDLEG00000014038	GTF2F1 (ENSDLEG00000014057)	PSPN (ENSDLEG00000014081) #15	ALKBH7 (ENSDLEG00000014092) #16	CLPP (ENSDLEG00000014104) #17	ACER1 (ENSDLEG00000014123) #18	MLLT1 (ENSDLEG00000014165) #20	ACSBG2 (ENSDLEG00000014214) #21	RFX2 (ENSDLEG00000014418) #22	RANBP3 (ENSDLEG00000014487) #23	CAPS (ENSDLEG00000014540) #24	VMAC (ENSDLEG00000014555)	NDUFA11 (ENSDLEG00000014563) #25	NRTN (ENSDLEG00000014575) #27	DUS3L (ENSDLEG00000014609) #28	CATSPERD (ENSDLEG00000014692)	LONP1 (ENSDLEG00000014745) #29	RPL36 (ENSDLEG00000014798) #30	HSD11B1L (ENSDLEG00000014805) #31	MICOS13 (ENSDLEG00000014825) #32	SAFB (ENSDLEG00000014882) #33	SAFB2 (ENSDLEG00000015173) #34	TINCR (ENSDLEG00000015241)	ZNRF4 (ENSDLEG00000015253) #36
Vaquita	MODERN SPECIES	14	TNFSF14 (ENSPSNG00000006140)	ENSPSNG00000006109 #7	ENSPSNG00000006095 #8	TUBB4A (ENSPSNG00000005996) #9	DENND1C (ENSPSNG00000019480) #10	CRB3 (ENSPSNG00000019435) #11	SLC25A23 (ENSPSNG00000019375) #12	KHSRP (ENSPSNG00000019110) #14	ENSPSNG00000019013	GTF2F1 (ENSPSNG00000018932)	ALKBH7 (ENSPSNG00000018862) #16	CLPP (ENSPSNG00000018810) #17	ACER1 (ENSPSNG00000018752) #18	MLLT1 (ENSPSNG00000018623) #20	ACSBG2 (ENSPSNG00000018336) #21	RFX2 (ENSPSNG00000018253) #22	RANBP3 (ENSPSNG00000018114) #23	CAPS (ENSPSNG00000018005) #24	VMAC (ENSPSNG00000017974)	NDUFA11 (ENSPSNG00000017931) #25	NRTN (ENSPSNG00000017905) #27	DUS3L (ENSPSNG00000017805) #28	PRR22 (ENSPSNG00000017752)	CATSPERD (ENSPSNG00000017551)	LONP1 (ENSPSNG00000017242) #29	RPL36 (ENSPSNG00000017170) #30	HSD11B1L (ENSPSNG00000016974) #31	MICOS13 (ENSPSNG00000016941) #32	SAFB (ENSPSNG00000016828) #33	SAFB2 (ENSPSNG00000016753) #34	TINCR (ENSPSNG00000016698)
Dolphin	MODERN SPECIES	2032																RFX2 (ENSTTRG00000007531) #22	RANBP3 (ENSTTRG00000007530) #23	ENSTTRG00000007529	VMAC (ENSTTRG00000007528)	NDUFA11 (ENSTTRG00000007527) #25	ENSTTRG00000007526
Sperm whale	MODERN SPECIES	11	ENSPCTG00005011386	ADGRE1 (ENSPCTG00005011511)	VAV1 (ENSPCTG00005012531)	SH2D3A (ENSPCTG00005013915)	TRIP10 (ENSPCTG00005014182)	GPR108 (ENSPCTG00005014379)	C3 (ENSPCTG00005014524)	TNFSF14 (ENSPCTG00005015045)	CD70 (ENSPCTG00005015119) #7	TNFSF9 (ENSPCTG00005015187) #8	KHSRP (ENSPCTG00005015259) #14	CLPP (ENSPCTG00005015762) #17	ACER1 (ENSPCTG00005015854) #18	MLLT1 (ENSPCTG00005015937) #20	ACSBG2 (ENSPCTG00005015989) #21	RFX2 (ENSPCTG00005016359) #22	ENSPCTG00005008489 #23	ENSPCTG00005008584	ENSPCTG00005008881	LONP1 (ENSPCTG00005009046) #29	RPL36 (ENSPCTG00005009451) #30	HSD11B1L (ENSPCTG00005009491) #31	MICOS13 (ENSPCTG00005009730) #32	ENSPCTG00005010047 #33	KDM4B (ENSPCTG00005014205)	PTPRS (ENSPCTG00005015250) #37	ZNRF4 (ENSPCTG00005015573) #36	FEM1A (ENSPCTG00005015656)	HDGFL2 (ENSPCTG00005015668)	ENSPCTG00005015705	FSD1 (ENSPCTG00005015759)
Blue whale	MODERN SPECIES	14	TNFSF9 (ENSBMSG00010002721) #8	TUBB4A (ENSBMSG00010002735) #9	DENND1C (ENSBMSG00010002755) #10	CRB3 (ENSBMSG00010002780) #11	SLC25A23 (ENSBMSG00010002792) #12	SLC25A41 (ENSBMSG00010002804) #13	KHSRP (ENSBMSG00010002829) #14	ENSBMSG00010002906	GTF2F1 (ENSBMSG00010002943)	PSPN (ENSBMSG00010002965) #15	ALKBH7 (ENSBMSG00010002973) #16	CLPP (ENSBMSG00010002982) #17	ACER1 (ENSBMSG00010002999) #18	MLLT1 (ENSBMSG00010003015) #20	ACSBG2 (ENSBMSG00010003047) #21	RFX2 (ENSBMSG00010003099) #22	RANBP3 (ENSBMSG00010003161) #23	CAPS (ENSBMSG00010003225) #24	VMAC (ENSBMSG00010003235)	NDUFA11 (ENSBMSG00010003243) #25	NRTN (ENSBMSG00010003262) #27	DUS3L (ENSBMSG00010003289) #28	CATSPERD (ENSBMSG00010003335)	LONP1 (ENSBMSG00010003368) #29	RPL36 (ENSBMSG00010003408) #30	HSD11B1L (ENSBMSG00010003419) #31	MICOS13 (ENSBMSG00010003442) #32	SAFB (ENSBMSG00010003461) #33	SAFB2 (ENSBMSG00010003501) #34	TINCR (ENSBMSG00010003509)	ZNRF4 (ENSBMSG00010003515) #36
Pecora	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Percora_a	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.n #33	ENSGT00940000155916.m.a #33
Bovidae	ANCESTRAL SPECIES		ENSGT00390000006244 #8	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.n #33	ENSGT00940000155916.m.a #33
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.n #33	ENSGT00940000155916.m.a #33
American bison	MODERN SPECIES	3349	ENSBBBG00000007050	TUBB4A (ENSBBBG00000000506) #9	ENSBBBG00000020590	DENND1C (ENSBBBG00000007187) #10	CRB3 (ENSBBBG00000020657) #11	SLC25A23 (ENSBBBG00000020672) #12	SLC25A41 (ENSBBBG00000020681) #13	KHSRP (ENSBBBG00000008202) #14	GTF2F1 (ENSBBBG00000020826)	ALKBH7 (ENSBBBG00000020847) #16	ENSBBBG00000008371 #15	CLPP (ENSBBBG00000020882) #17	ENSBBBG00000005623 #18	MLLT1 (ENSBBBG00000020959) #20	ACSBG2 (ENSBBBG00000021028) #21	RFX2 (ENSBBBG00000007387) #22	RANBP3 (ENSBBBG00000021259) #23	CAPS (ENSBBBG00000008402) #24	ENSBBBG00000021299	NDUFA11 (ENSBBBG00000021309) #25	ENSBBBG00000021316	NRTN (ENSBBBG00000021324) #27	DUS3L (ENSBBBG00000021385) #28	CATSPERD (ENSBBBG00000005716)	LONP1 (ENSBBBG00000005732) #29	ENSBBBG00000021559 #30	HSD11B1L (ENSBBBG00000021637) #31	MICOS13 (ENSBBBG00000021662) #32	ENSBBBG00000021670 #33	ENSBBBG00000021680 #33	SAFB2 (ENSBBBG00000007636) #34
Bos	ANCESTRAL SPECIES	3	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b.h #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.n #33	ENSGT00940000155916.m.a #33
Bos_a	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.a.k ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.m.a #33	ENSGT00940000155916.m.b #33
Domestic yak	MODERN SPECIES	27	TUBB4A (ENSBGRG00000026030) #9	ENSBGRG00000000364	DENND1C (ENSBGRG00000000393) #10	CRB3 (ENSBGRG00000000409) #11	SLC25A23 (ENSBGRG00000000430) #12	SLC25A41 (ENSBGRG00000000480) #13	KHSRP (ENSBGRG00000000517) #14	GTF2F1 (ENSBGRG00000000661)	PSPN (ENSBGRG00000000694) #15	ALKBH7 (ENSBGRG00000000719) #16	CLPP (ENSBGRG00000000753) #17	ACER1 (ENSBGRG00000000765) #18	MLLT1 (ENSBGRG00000000789) #20	ENSBGRG00000000819	ACSBG2 (ENSBGRG00000000844) #21	RFX2 (ENSBGRG00000000923) #22	ENSBGRG00000000938	RANBP3 (ENSBGRG00000000978) #23	CAPS (ENSBGRG00000001193) #24	VMAC (ENSBGRG00000001217)	NDUFA11 (ENSBGRG00000001226) #25	ENSBGRG00000001243	ENSBGRG00000001255	NRTN (ENSBGRG00000001261) #27	DUS3L (ENSBGRG00000001278) #28	PRR22 (ENSBGRG00000001352)	CATSPERD (ENSBGRG00000001388)	LONP1 (ENSBGRG00000001424) #29	HSD11B1L (ENSBGRG00000001504) #31	MICOS13 (ENSBGRG00000001661) #32	ENSBGRG00000001800 #33
Wild yak	MODERN SPECIES	1314													MLLT1 (ENSBMUG00000026014) #20	ENSBMUG00000026012	ACSBG2 (ENSBMUG00000026010) #21	RFX2 (ENSBMUG00000026006) #22	RANBP3 (ENSBMUG00000026003) #23	CAPS (ENSBMUG00000025987) #24	VMAC (ENSBMUG00000025986)	NDUFA11 (ENSBMUG00000025985) #25	ENSBMUG00000025983	ENSBMUG00000025980 #27	DUS3L (ENSBMUG00000025978) #28	PRR22 (ENSBMUG00000025971)	CATSPERD (ENSBMUG00000025962)	ENSBMUG00000025956 ##30	LONP1 (ENSBMUG00000025950) #29	HSD11B1L (ENSBMUG00000025940) #31	MICOS13 (ENSBMUG00000025934) #32
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT01100000263474.a.b.b.e.a.a.a.a.u.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b.h #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916.n #33	ENSGT00940000161482 #34
Cow	MODERN SPECIES	26	TUBB4A (ENSBTAG00000021013) #9	ENSBTAG00000051810	DENND1C (ENSBTAG00000031809) #10	CRB3 (ENSBTAG00000051530) #11	SLC25A23 (ENSBTAG00000003491) #12	SLC25A41 (ENSBTAG00000020017) #13	KHSRP (ENSBTAG00000021018) #14	GTF2F1 (ENSBTAG00000021016)	PSPN (ENSBTAG00000031794) #15	ALKBH7 (ENSBTAG00000025540) #16	CLPP (ENSBTAG00000014712) #17	ACER1 (ENSBTAG00000008095) #18	MLLT1 (ENSBTAG00000002277) #20	ENSBTAG00000049278 #21	ACSBG2 (ENSBTAG00000009105) #21	RFX2 (ENSBTAG00000017661) #22	RANBP3 (ENSBTAG00000006070) #23	CAPS (ENSBTAG00000006069) #24	VMAC (ENSBTAG00000006067)	NDUFA11 (ENSBTAG00000019025) #25	FUT6 (ENSBTAG00000000414)	NRTN (ENSBTAG00000000413) #27	DUS3L (ENSBTAG00000011842) #28	PRR22 (ENSBTAG00000025550)	CATSPERD (ENSBTAG00000001796)	LONP1 (ENSBTAG00000001795) #29	RPL36 (ENSBTAG00000001794) #30	HSD11B1L (ENSBTAG00000001793) #31	MICOS13 (ENSBTAG00000001792) #32	SAFB (ENSBTAG00000007875) #33	ENSBTAG00000051794 #33
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005011344	TUBB4A (ENSBIXG00005001091) #9	DENND1C (ENSBIXG00005011411) #10	CRB3 (ENSBIXG00005000466) #11	SLC25A23 (ENSBIXG00005011521) #12	SLC25A41 (ENSBIXG00005011565) #13	KHSRP (ENSBIXG00005011664) #14	GTF2F1 (ENSBIXG00005001151)	PSPN (ENSBIXG00005011696) #15	ALKBH7 (ENSBIXG00005011712) #16	CLPP (ENSBIXG00005011763) #17	ACER1 (ENSBIXG00005005477) #18	MLLT1 (ENSBIXG00005001179) #20	ACSBG2 (ENSBIXG00005001189) #21	ENSBIXG00005011901	RFX2 (ENSBIXG00005012097) #22	ENSBIXG00005000272 #24	NDUFA11 (ENSBIXG00005012200) #25	ENSBIXG00005001267	NRTN (ENSBIXG00005012230) #27	DUS3L (ENSBIXG00005012323) #28	CATSPERD (ENSBIXG00005012388)	LONP1 (ENSBIXG00005001346) #29	ENSBIXG00005012522 #30	HSD11B1L (ENSBIXG00005012597) #31	MICOS13 (ENSBIXG00005006332) #32	SAFB (ENSBIXG00005012788) #33	SAFB2 (ENSBIXG00005012877) #34	TINCR (ENSBIXG00005012905)	ENSBIXG00005012918 #36	PTPRS (ENSBIXG00005001496) #37
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000006244 #8	ENSGT00940000164486	ENSGT00940000161972 #9	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.b #30	ENSGT00940000162487 #31	ENSGT00390000002629.c #32	ENSGT00940000155916.n #33	ENSGT00940000161482 #34	ENSGT00940000163061 #36	ENSGT00940000153617.A.b #37
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020019106	TUBB4A (ENSOARG00020019161) #9	DENND1C (ENSOARG00020019197) #10	CRB3 (ENSOARG00020019269) #11	SLC25A23 (ENSOARG00020019333) #12	SLC25A41 (ENSOARG00020019425) #13	KHSRP (ENSOARG00020019494) #14	GTF2F1 (ENSOARG00020019647)	PSPN (ENSOARG00020019711) #15	ALKBH7 (ENSOARG00020019744) #16	CLPP (ENSOARG00020019811) #17	ACER1 (ENSOARG00020019869) #18	MLLT1 (ENSOARG00020019921) #20	ENSOARG00020020028	ACSBG2 (ENSOARG00020020054) #21	RFX2 (ENSOARG00020020257) #22	RANBP3 (ENSOARG00020020564) #23	CAPS (ENSOARG00020020769) #24	VMAC (ENSOARG00020020817)	NDUFA11 (ENSOARG00020020850) #25	ENSOARG00020020891	NRTN (ENSOARG00020020907) #27	DUS3L (ENSOARG00020020943) #28	PRR22 (ENSOARG00020021041)	CATSPERD (ENSOARG00020021093)	LONP1 (ENSOARG00020021281) #29	RPL36 (ENSOARG00020008622) #30	HSD11B1L (ENSOARG00020008652) #31	MICOS13 (ENSOARG00020008768) #32	ENSOARG00020008821 #33	ENSOARG00020009005 #33
Goat	MODERN SPECIES	26	ENSCHIG00000004302 #8	TUBB4A (ENSCHIG00000020195) #9	DENND1C (ENSCHIG00000017569) #10	CRB3 (ENSCHIG00000023021) #11	SLC25A23 (ENSCHIG00000008013) #12	SLC25A41 (ENSCHIG00000017363) #13	KHSRP (ENSCHIG00000027053) #14	ENSCHIG00000011986	PSPN (ENSCHIG00000018638) #15	ALKBH7 (ENSCHIG00000024761) #16	CLPP (ENSCHIG00000023189) #17	ACER1 (ENSCHIG00000008361) #18	ENSCHIG00000016868	MLLT1 (ENSCHIG00000022842) #20	ACSBG2 (ENSCHIG00000016276) #21	RFX2 (ENSCHIG00000023052) #22	RANBP3 (ENSCHIG00000021064) #23	CAPS (ENSCHIG00000022459) #24	VMAC (ENSCHIG00000004574)	NDUFA11 (ENSCHIG00000021213) #25	PRR22 (ENSCHIG00000022206)	DUS3L (ENSCHIG00000021327) #28	LONP1 (ENSCHIG00000003365) #29	RPL36 (ENSCHIG00000014701) #30	HSD11B1L (ENSCHIG00000023498) #31	ENSCHIG00000025054 #32	SAFB (ENSCHIG00000007262) #33	SAFB2 (ENSCHIG00000024547) #34	ZNRF4 (ENSCHIG00000009323) #36	PTPRS (ENSCHIG00000027091) #37	KDM4B (ENSCHIG00000017369)
Siberian musk deer	MODERN SPECIES	99	TNFSF9 (ENSMMSG00000007760) #8	ENSMMSG00000007773	TUBB4A (ENSMMSG00000007812) #9	DENND1C (ENSMMSG00000007861) #10	ENSMMSG00000008095 #11	SLC25A23 (ENSMMSG00000008146) #12	SLC25A41 (ENSMMSG00000008181) #13	KHSRP (ENSMMSG00000008232) #14	GTF2F1 (ENSMMSG00000008317)	PSPN (ENSMMSG00000008350) #15	ALKBH7 (ENSMMSG00000008382) #16	CLPP (ENSMMSG00000008431) #17	ACER1 (ENSMMSG00000008449) #18	MLLT1 (ENSMMSG00000008480) #20	ACSBG2 (ENSMMSG00000008549) #21	RFX2 (ENSMMSG00000008753) #22	ENSMMSG00000008883	RANBP3 (ENSMMSG00000008928) #23	CAPS (ENSMMSG00000009082) #24	VMAC (ENSMMSG00000009134)	NDUFA11 (ENSMMSG00000009156) #25	NRTN (ENSMMSG00000009181) #27	ENSMMSG00000009212	DUS3L (ENSMMSG00000009249) #28	PRR22 (ENSMMSG00000009493)	CATSPERD (ENSMMSG00000009524)	LONP1 (ENSMMSG00000009638) #29	ENSMMSG00000009807 ##30	HSD11B1L (ENSMMSG00000009847) #31	MICOS13 (ENSMMSG00000009950) #32	ENSMMSG00000010451 #33
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000016453 #8	ENSCHYG00000016483	TUBB4A (ENSCHYG00000016548) #9	DENND1C (ENSCHYG00000016610) #10	CRB3 (ENSCHYG00000016801) #11	SLC25A23 (ENSCHYG00000016841) #12	KHSRP (ENSCHYG00000017189) #14	ENSCHYG00000019841	PSPN (ENSCHYG00000019928) #15	ALKBH7 (ENSCHYG00000019961) #16	CLPP (ENSCHYG00000020020) #17	ACER1 (ENSCHYG00000020198) #18	MLLT1 (ENSCHYG00000020253) #20	ACSBG2 (ENSCHYG00000020499) #21	ENSCHYG00000020848	RFX2 (ENSCHYG00000020941) #22	RANBP3 (ENSCHYG00000021150) #23	CAPS (ENSCHYG00000021783) #24	VMAC (ENSCHYG00000021843)	NDUFA11 (ENSCHYG00000021871) #25	ENSCHYG00000021955	NRTN (ENSCHYG00000021980) #27	DUS3L (ENSCHYG00000000481) #28	PRR22 (ENSCHYG00000000509)	LONP1 (ENSCHYG00000000595) #29	HSD11B1L (ENSCHYG00000000636) #31	MICOS13 (ENSCHYG00000000687) #32	ENSCHYG00000000705 #34	SAFB2 (ENSCHYG00000000733) #34	TINCR (ENSCHYG00000000759)	ZNRF4 (ENSCHYG00000000771) #36
Camelidae	ANCESTRAL SPECIES	36									ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a.a.b.a.a #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Arabian camel	MODERN SPECIES	14	CD70 (ENSCDRG00005021939) #7	TUBB4A (ENSCDRG00005021940) #9	DENND1C (ENSCDRG00005021941) #10	CRB3 (ENSCDRG00005021942) #11	SLC25A23 (ENSCDRG00005021943) #12	SLC25A41 (ENSCDRG00005021944) #13	KHSRP (ENSCDRG00005021945) #14	ENSCDRG00005021946	GTF2F1 (ENSCDRG00005021947)	PSPN (ENSCDRG00005021948) #15	ALKBH7 (ENSCDRG00005021949) #16	CLPP (ENSCDRG00005021950) #17	ACER1 (ENSCDRG00005021951) #18	MLLT1 (ENSCDRG00005021952) #20	ACSBG2 (ENSCDRG00005021953) #21	RFX2 (ENSCDRG00005021955) #22	RANBP3 (ENSCDRG00005021957) #23	CAPS (ENSCDRG00005021958) #24	VMAC (ENSCDRG00005021959)	NDUFA11 (ENSCDRG00005021961) #25	ENSCDRG00005021962	NRTN (ENSCDRG00005021964) #27	DUS3L (ENSCDRG00005021966) #28	PRR22 (ENSCDRG00005021969)	CATSPERD (ENSCDRG00005021971)	LONP1 (ENSCDRG00005021975) #29	ENSCDRG00005021978 #30	HSD11B1L (ENSCDRG00005021979) #31	MICOS13 (ENSCDRG00005021982) #32	SAFB (ENSCDRG00005021986) #33	SAFB2 (ENSCDRG00005021993) #34
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.a #22
Common shrew	MODERN SPECIES	7216																ENSSARG00000013605 #22
Atlantogenata	ANCESTRAL SPECIES	144																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.b ##30	ENSGT00390000011943.a.a #30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33
Afrotheria	ANCESTRAL SPECIES	176																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.b ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Tenrec	MODERN SPECIES	30																ENSETEG00000006652 #22
Afrotheria_a	ANCESTRAL SPECIES	181																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.b ##30	ENSGT00940000162487 #31	ENSGT00390000002629 #32	ENSGT00940000155916 #33	ENSGT00940000161482 #34
Elephant	DUPLICATION
Elephant	MODERN SPECIES	46	TNFSF14 (ENSLAFG00000021999)	ACSBG2 (ENSLAFG00000006705) #21	MLLT1 (ENSLAFG00000026589) #20	ACER1 (ENSLAFG00000012500) #18	CLPP (ENSLAFG00000027937) #17	ALKBH7 (ENSLAFG00000003852) #16	ENSLAFG00000003851 #15	ENSLAFG00000030192	ENSLAFG00000020872	KHSRP (ENSLAFG00000002426) #14	SLC25A41 (ENSLAFG00000028633) #13	SLC25A23 (ENSLAFG00000013828) #12	CRB3 (ENSLAFG00000013740) #11	TNFSF9 (ENSLAFG00000028534) #8	CD70 (ENSLAFG00000008781) #7	ENSLAFG00000027235 #22	ENSLAFG00000013350 #22	RANBP3 (ENSLAFG00000001841) #23	CAPS (ENSLAFG00000028433) #24	VMAC (ENSLAFG00000005431)	NDUFA11 (ENSLAFG00000028920) #25	ENSLAFG00000013441	ENSLAFG00000010081	ENSLAFG00000023311	NRTN (ENSLAFG00000000500) #27	DUS3L (ENSLAFG00000027552) #28	CATSPERD (ENSLAFG00000030723)	LONP1 (ENSLAFG00000031651) #29	MICOS13 (ENSLAFG00000026050) #32	SAFB (ENSLAFG00000003840) #33	SAFB2 (ENSLAFG00000003836) #34
Elephant	MODERN SPECIES	46	ACSBG2 (ENSLAFG00000006705) #21	MLLT1 (ENSLAFG00000026589) #20	ACER1 (ENSLAFG00000012500) #18	CLPP (ENSLAFG00000027937) #17	ALKBH7 (ENSLAFG00000003852) #16	ENSLAFG00000003851 #15	ENSLAFG00000030192	ENSLAFG00000020872	KHSRP (ENSLAFG00000002426) #14	SLC25A41 (ENSLAFG00000028633) #13	SLC25A23 (ENSLAFG00000013828) #12	CRB3 (ENSLAFG00000013740) #11	TNFSF9 (ENSLAFG00000028534) #8	CD70 (ENSLAFG00000008781) #7	ENSLAFG00000027235 #22	ENSLAFG00000013350 #22	RANBP3 (ENSLAFG00000001841) #23	CAPS (ENSLAFG00000028433) #24	VMAC (ENSLAFG00000005431)	NDUFA11 (ENSLAFG00000028920) #25	ENSLAFG00000013441	ENSLAFG00000010081	ENSLAFG00000023311	NRTN (ENSLAFG00000000500) #27	DUS3L (ENSLAFG00000027552) #28	CATSPERD (ENSLAFG00000030723)	LONP1 (ENSLAFG00000031651) #29	MICOS13 (ENSLAFG00000026050) #32	SAFB (ENSLAFG00000003840) #33	SAFB2 (ENSLAFG00000003836) #34	ENSLAFG00000001854
Hyrax	MODERN SPECIES	6555																RFX2 (ENSPCAG00000005516) #22	RANBP3 (ENSPCAG00000005366) #23	CAPS (ENSPCAG00000005222) #24	VMAC (ENSPCAG00000005191)
Xenarthra	ANCESTRAL SPECIES	529																ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128
Sloth	MODERN SPECIES	9																ENSCHOG00000006667 #22
Armadillo	MODERN SPECIES	710														ENSDNOG00000049525	ENSDNOG00000039422	RFX2 (ENSDNOG00000033124) #22	ENSDNOG00000049084	RANBP3 (ENSDNOG00000008849) #23	CAPS (ENSDNOG00000008840) #24	VMAC (ENSDNOG00000008836)	NDUFA11 (ENSDNOG00000035011) #25	ENSDNOG00000044039	NRTN (ENSDNOG00000048073) #27	DUS3L (ENSDNOG00000048551) #28	PRR22 (ENSDNOG00000038830)	ENSDNOG00000031322
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00940000163693	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a #29	ENSGT00390000011943.a.a #30	ENSGT00390000002629 #32	ENSGT00940000165061	ENSGT00940000155916 #33	ENSGT00940000161482 #34	ENSGT01010000222912
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a.g #29	ENSGT00390000011943.b ##30	ENSGT00390000011943.a.a #30	ENSGT00390000002629 #32	ENSGT00940000165061
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588 #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a.g #29	ENSGT00390000011943.a.a #30	ENSGT00390000002629 #32	ENSGT00940000165061	ENSGT00940000155916 #33
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000154394.b.a.a.b.b	ENSGT00940000161573 #10	ENSGT00950000183101.a.b.a #11	ENSGT00940000159428 #12	ENSGT00940000162419 #13	ENSGT00940000156051 #14	ENSGT00940000163693	ENSGT00440000038032.hb	ENSGT00950000182993.B.b #15	ENSGT00390000014585 #16	ENSGT00390000005830 #17	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A.p #21	ENSGT00940000155332.A.o #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000158588.q #23	ENSGT00940000162442 #24	ENSGT00390000007212	ENSGT00390000012434.h #25	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00390000016128	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a.g #29	ENSGT00390000011943.a.a #30	ENSGT00390000002629 #32	ENSGT00940000165061	ENSGT00940000155916 #33
koala	MODERN SPECIES	214	ENSPCIG00000016640 #8	ENSPCIG00000016632	CRB3 (ENSPCIG00000033282) #11	SLC25A23 (ENSPCIG00000016625) #12	SLC25A41 (ENSPCIG00000016624) #13	KHSRP (ENSPCIG00000025516) #14	ENSPCIG00000004565	ENSPCIG00000003850	ENSPCIG00000034364	ALKBH7 (ENSPCIG00000016623) #16	CLPP (ENSPCIG00000016621) #17	ACER1 (ENSPCIG00000016619) #18	MLLT1 (ENSPCIG00000032521) #20	ENSPCIG00000019691 #21	ENSPCIG00000013268 #21	RFX2 (ENSPCIG00000008454) #22	ENSPCIG00000008455 #23	CAPS (ENSPCIG00000008456) #24	VMAC (ENSPCIG00000008457)	ENSPCIG00000031677 #25	ENSPCIG00000008459	ENSPCIG00000008470 #27	DUS3L (ENSPCIG00000008483) #28	ENSPCIG00000009483	ENSPCIG00000009484	ENSPCIG00000009485	LONP1 (ENSPCIG00000009491) #29	RPL36 (ENSPCIG00000009495) #30	ENSPCIG00000009497 #32	ENSPCIG00000009499	SAFB (ENSPCIG00000009504) #33
Common wonbat	MODERN SPECIES	580	ENSVURG00010024360	DENND1C (ENSVURG00010024363) #10	SLC25A23 (ENSVURG00010024368) #12	SLC25A41 (ENSVURG00010024376) #13	ENSVURG00010024380	ENSVURG00010024383	ENSVURG00010024387	ENSVURG00010024392 #15	ALKBH7 (ENSVURG00010024395) #16	CLPP (ENSVURG00010024400) #17	ACER1 (ENSVURG00010024402) #18	MLLT1 (ENSVURG00010024407) #20	ENSVURG00010024418 #21	ENSVURG00010024432 #21	ENSVURG00010024437	RFX2 (ENSVURG00010024439) #22	RANBP3 (ENSVURG00010024451) #23	CAPS (ENSVURG00010024467) #24	VMAC (ENSVURG00010024470)	ENSVURG00010024473 #25	ENSVURG00010024474	NRTN (ENSVURG00010024477) #27	DUS3L (ENSVURG00010024481) #28	ENSVURG00010024487	LONP1 (ENSVURG00010024506) #29	RPL36 (ENSVURG00010024521) ##30	ENSVURG00010024523 #32	ENSVURG00010024525	SAFB (ENSVURG00010024530) #33	SAFB2 (ENSVURG00010024546) #34	ENSVURG00010024552
Wallaby	MODERN SPECIES	554																RFX2 (ENSMEUG00000009870) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000020579	DENND1C (ENSSHAG00000011768) #10	ENSSHAG00000023441 #11	SLC25A23 (ENSSHAG00000011678) #12	SLC25A41 (ENSSHAG00000011643) #13	KHSRP (ENSSHAG00000011383) #14	ENSSHAG00000022420	ENSSHAG00000030352	ENSSHAG00000010846	ENSSHAG00000029162 #15	ALKBH7 (ENSSHAG00000026703) #16	CLPP (ENSSHAG00000010777) #17	MLLT1 (ENSSHAG00000009440) #20	ENSSHAG00000008859 #21	ENSSHAG00000008517 #21	RFX2 (ENSSHAG00000005810) #22	RANBP3 (ENSSHAG00000027846) #23	CAPS (ENSSHAG00000021620) #24	ENSSHAG00000021266	NRTN (ENSSHAG00000028408) #27	DUS3L (ENSSHAG00000014156) #28	ENSSHAG00000022434	ENSSHAG00000013790	ENSSHAG00000013497 #29	RPL36 (ENSSHAG00000013492) ##30	ENSSHAG00000013187	ENSSHAG00000012954 #33	SAFB2 (ENSSHAG00000012703) #34	ENSSHAG00000028648 #36	PTPRS (ENSSHAG00000008059) #37	KDM4B (ENSSHAG00000027527)
Opossum	MODERN SPECIES	2	ENSMODG00000001954 #7	ENSMODG00000002060 #8	ENSMODG00000002055	ENSMODG00000024011	DENND1C (ENSMODG00000002048) #10	ENSMODG00000002023 #12	SLC25A41 (ENSMODG00000001959) #13	KHSRP (ENSMODG00000001952) #14	ENSMODG00000051201	ENSMODG00000001941	ENSMODG00000037547	ACER1 (ENSMODG00000001913) #18	MLLT1 (ENSMODG00000001886) #20	ENSMODG00000049985 #21	ENSMODG00000001431 #21	RFX2 (ENSMODG00000001398) #22	RANBP3 (ENSMODG00000001371) #23	ENSMODG00000001357 #24	VMAC (ENSMODG00000049884)	ENSMODG00000001343 #25	DUS3L (ENSMODG00000001339) #28	ENSMODG00000042676	ENSMODG00000001314	ENSMODG00000025644	LONP1 (ENSMODG00000001308) #29	RPL36 (ENSMODG00000001275) #30	ENSMODG00000001268 #32	ENSMODG00000001263	SAFB (ENSMODG00000001236) #33	SAFB2 (ENSMODG00000001178) #34	ENSMODG00000001148 #36
Platypus	MODERN SPECIES	84	ENSOANG00000020436	ENSOANG00000043970	ENSOANG00000038414	ENSOANG00000046625	ENSOANG00000036852	ENSOANG00000044718	ENSOANG00000051044	ENSOANG00000048744	ADAMTS10 (ENSOANG00000048563)	MYO1F (ENSOANG00000031364)	ENSOANG00000013254	ENSOANG00000013256	ACER1 (ENSOANG00000001816) #18	MLLT1 (ENSOANG00000041566) #20	ACSBG2 (ENSOANG00000006236) #21	RFX2 (ENSOANG00000003796) #22	RANBP3 (ENSOANG00000004948) #23	ENSOANG00000004951 #24	NDUFA11 (ENSOANG00000004952) #25	ENSOANG00000004953	IPPK (ENSOANG00000040735)	ECM2 (ENSOANG00000006388)	ASPN (ENSOANG00000007011)	OMD (ENSOANG00000000114)	OGN (ENSOANG00000000113)	ENSOANG00000046190	ENSOANG00000015102	IARS1 (ENSOANG00000000112)	ENSOANG00000015176	SLC6A11 (ENSOANG00000039168)	SLC6A1 (ENSOANG00000015178)
Sauria	ANCESTRAL SPECIES	20	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Archosauria	ANCESTRAL SPECIES	16	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261
Aves	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Neognathae	ANCESTRAL SPECIES	21	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Neognathae_b	ANCESTRAL SPECIES	22	ENSGT00390000006337	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Passeriformes	ANCESTRAL SPECIES	27	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399
Great tit	MODERN SPECIES	21	ENSPMJG00000010606	OAZ1 (ENSPMJG00000010608)	ENSPMJG00000010609	LINGO3 (ENSPMJG00000010611)	ENSPMJG00000010612	ENSPMJG00000010633	ENSPMJG00000010637	NFILZ (ENSPMJG00000010639)	ZAP70 (ENSPMJG00000010641)	ADAMTS10 (ENSPMJG00000010642)	MYO1F (ENSPMJG00000010643)	ENSPMJG00000010647	ACER1 (ENSPMJG00000010649) #18	MLLT1 (ENSPMJG00000010651) #20	ACSBG2 (ENSPMJG00000010652) #21	RFX2 (ENSPMJG00000010657) #22	IFI30 (ENSPMJG00000010828)	PIK3R2 (ENSPMJG00000010829)	MAST3 (ENSPMJG00000010830)	ENSPMJG00000010833	ARRDC2 (ENSPMJG00000010834)	PEX11G (ENSPMJG00000010835)	ENSPMJG00000010836	ARHGEF18 (ENSPMJG00000010837)	ENSPMJG00000010842	INSR (ENSPMJG00000010844)	USE1 (ENSPMJG00000010845)	MYO9B (ENSPMJG00000010846)	HAUS8 (ENSPMJG00000010850)	CPAMD8 (ENSPMJG00000010852)	F2RL3 (ENSPMJG00000010859)
Passeriformes_d	ANCESTRAL SPECIES	28	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399
Flycatcher	MODERN SPECIES	20	AMH (ENSFALG00000028741)	OAZ1 (ENSFALG00000013794)	LINGO3 (ENSFALG00000014305)	ENSFALG00000025050	ENSFALG00000025175	NFILZ (ENSFALG00000027243)	ENSFALG00000013807	ENSFALG00000014311	ADAMTS10 (ENSFALG00000013813)	MYO1F (ENSFALG00000013814)	ENSFALG00000028457	ZNF414 (ENSFALG00000028613)	ACER1 (ENSFALG00000024447) #18	MLLT1 (ENSFALG00000013823) #20	ACSBG2 (ENSFALG00000013826) #21	RFX2 (ENSFALG00000013832) #22	ENSFALG00000026674	ENSFALG00000013834	IFI30 (ENSFALG00000013837)	PIK3R2 (ENSFALG00000013839)	MAST3 (ENSFALG00000013842)	ARRDC2 (ENSFALG00000013849)	ENSFALG00000023440	ENSFALG00000013850	ENSFALG00000013852	ENSFALG00000026675	ENSFALG00000013853	USE1 (ENSFALG00000026213)	MYO9B (ENSFALG00000013855)	HAUS8 (ENSFALG00000013857)	CPAMD8 (ENSFALG00000013860)
Passeriformes_g	ANCESTRAL SPECIES	29	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00720000108823.a.a	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399	ENSGT01050000244840.A.b.a
Passeroidea	ANCESTRAL SPECIES	29	ENSGT00390000005235	ENSGT00720000108823.b	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000010450	ENSGT00940000157050	ENSGT00940000157166	ENSGT00390000012431	ENSGT00940000159994	ENSGT00390000000427	ENSGT00950000182983.B.a.a	ENSGT00940000157375	ENSGT00940000155404	ENSGT00390000014361	ENSGT00940000156845	ENSGT00390000010974	ENSGT00940000162399	ENSGT01050000244840.A.b.a
Common canary	MODERN SPECIES	44	AP3D1 (ENSSCAG00000002302)	DOT1L (ENSSCAG00000002326)	PLEKHJ1 (ENSSCAG00000002343)	SF3A2 (ENSSCAG00000002348)	OAZ1 (ENSSCAG00000002364)	ENSSCAG00000002394	ZAP70 (ENSSCAG00000002398)	ADAMTS10 (ENSSCAG00000002453)	ENSSCAG00000002641	MYO1F (ENSSCAG00000002644)	ZNF414 (ENSSCAG00000002652)	ENSSCAG00000002662	ACER1 (ENSSCAG00000002667) #18	MLLT1 (ENSSCAG00000002671) #20	ACSBG2 (ENSSCAG00000002681) #21	RFX2 (ENSSCAG00000002695) #22	ENSSCAG00000002698	IFI30 (ENSSCAG00000002724)	PIK3R2 (ENSSCAG00000002784)	MAST3 (ENSSCAG00000002920)	ARRDC2 (ENSSCAG00000003515)	PEX11G (ENSSCAG00000003522)	ENSSCAG00000003532	ARHGEF18 (ENSSCAG00000003534)	ENSSCAG00000003545	INSR (ENSSCAG00000003553)	USE1 (ENSSCAG00000003564)	MYO9B (ENSSCAG00000003623)	HAUS8 (ENSSCAG00000003910)	CPAMD8 (ENSSCAG00000003920)	F2RL3 (ENSSCAG00000003938)
Zebra finch	MODERN SPECIES	21	PLEKHJ1 (ENSTGUG00000021961)	SF3A2 (ENSTGUG00000000305)	LINGO3 (ENSTGUG00000000323)	ENSTGUG00000000325	ENSTGUG00000000327	OAZ1 (ENSTGUG00000000312)	ENSTGUG00000022848	ZAP70 (ENSTGUG00000000330)	ADAMTS10 (ENSTGUG00000000334)	MYO1F (ENSTGUG00000000346)	ZNF414 (ENSTGUG00000000351)	ENSTGUG00000000352	ACER1 (ENSTGUG00000025023) #18	MLLT1 (ENSTGUG00000000360) #20	ACSBG2 (ENSTGUG00000000363) #21	RFX2 (ENSTGUG00000000369) #22	IFI30 (ENSTGUG00000000388)	PIK3R2 (ENSTGUG00000000392)	MAST3 (ENSTGUG00000000403)	ENSTGUG00000026934	ARRDC2 (ENSTGUG00000000411)	PEX11G (ENSTGUG00000026140)	ENSTGUG00000000415	ARHGEF18 (ENSTGUG00000000416)	INSR (ENSTGUG00000000426)	USE1 (ENSTGUG00000000443)	MYO9B (ENSTGUG00000000453)	HAUS8 (ENSTGUG00000000469)	CPAMD8 (ENSTGUG00000000470)	F2RL3 (ENSTGUG00000000473)	SIN3B (ENSTGUG00000000474)
Medium ground finch	MODERN SPECIES	251						ENSGFOG00000013995	ENSGFOG00000013997	ZAP70 (ENSGFOG00000013999)	ADAMTS10 (ENSGFOG00000014001)	MYO1F (ENSGFOG00000014025)	ENSGFOG00000014208	ENSGFOG00000014210	ACER1 (ENSGFOG00000014212) #18	MLLT1 (ENSGFOG00000014213) #20	ACSBG2 (ENSGFOG00000014217) #21	RFX2 (ENSGFOG00000014241) #22	IFI30 (ENSGFOG00000014333)	PIK3R2 (ENSGFOG00000014336)	MAST3 (ENSGFOG00000014346)	ARRDC2 (ENSGFOG00000014384)	ARHGEF18 (ENSGFOG00000014387)	INSR (ENSGFOG00000014399)	USE1 (ENSGFOG00000014409)	MYO9B (ENSGFOG00000014411)	HAUS8 (ENSGFOG00000014434)
Neognathae_c	ANCESTRAL SPECIES	24	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237	ENSGT00940000160050
Kakapo	MODERN SPECIES	13	PLEKHJ1 (ENSSHBG00005014296)	SF3A2 (ENSSHBG00005014304)	AMH (ENSSHBG00005014313)	ENSSHBG00005014321	OAZ1 (ENSSHBG00005014344)	LINGO3 (ENSSHBG00005014360)	NFILZ (ENSSHBG00005014373)	ZAP70 (ENSSHBG00005014385)	ADAMTS10 (ENSSHBG00005014419)	MYO1F (ENSSHBG00005014552)	ZNF414 (ENSSHBG00005016095)	ENSSHBG00005016097	ACER1 (ENSSHBG00005016101) #18	MLLT1 (ENSSHBG00005016105) #20	ACSBG2 (ENSSHBG00005016127) #21	RFX2 (ENSSHBG00005016885) #22	ENSSHBG00005016968	FBN3 (ENSSHBG00005017003)	EBI3 (ENSSHBG00005017066)	ANKRD24 (ENSSHBG00005017072)	SIRT6 (ENSSHBG00005017080)	CREB3L3 (ENSSHBG00005017085)	MAP2K2 (ENSSHBG00005017092)	ZBTB7A (ENSSHBG00005017095)	ENSSHBG00005017098	PIAS4 (ENSSHBG00005017101)	EEF2 (ENSSHBG00005017109)	ENSSHBG00005017116	ENSSHBG00005017120	ATCAY (ENSSHBG00005017123)	ENSSHBG00005017126
Golden eagle	MODERN SPECIES	3	PLEKHJ1 (ENSACCG00020016167)	SF3A2 (ENSACCG00020016156)	AMH (ENSACCG00020016136)	ENSACCG00020016128	OAZ1 (ENSACCG00020016110)	LINGO3 (ENSACCG00020016098)	NFILZ (ENSACCG00020016091)	ZAP70 (ENSACCG00020016078)	ADAMTS10 (ENSACCG00020016059)	MYO1F (ENSACCG00020016023)	ZNF414 (ENSACCG00020016006)	ENSACCG00020015996	ACER1 (ENSACCG00020015987) #18	MLLT1 (ENSACCG00020015972) #20	ACSBG2 (ENSACCG00020015951) #21	RFX2 (ENSACCG00020015906) #22	ENSACCG00020015877	DUS3L (ENSACCG00020015859) #28	NRTN (ENSACCG00020015844) #27	ENSACCG00020015834	ATCAY (ENSACCG00020015815)	NMRK2 (ENSACCG00020015806)	DAPK3 (ENSACCG00020015793)	EEF2 (ENSACCG00020015772)	PIAS4 (ENSACCG00020015756)	ZBTB7A (ENSACCG00020015748)	MAP2K2 (ENSACCG00020015740)	CREB3L3 (ENSACCG00020015724)	SIRT6 (ENSACCG00020015712)	ANKRD24 (ENSACCG00020015679)	EBI3 (ENSACCG00020015642)
Galloanserae	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT00940000160088	ENSGT00940000159237
Anatidae	ANCESTRAL SPECIES	65	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404.n	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a.b #18	ENSGT00730000110920.b.a.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364
Pink-footed goose	MODERN SPECIES	329				ENSABRG00000013686	ACTL9 (ENSABRG00000013679)	NFILZ (ENSABRG00000013672)	ZAP70 (ENSABRG00000013663)	ADAMTS10 (ENSABRG00000013415)	MYO1F (ENSABRG00000013388)	ZNF414 (ENSABRG00000013383)	ENSABRG00000013368	ENSABRG00000013361 #18	ENSABRG00000013350 #18	MLLT1 (ENSABRG00000013334) #20	ACSBG2 (ENSABRG00000013324) #21	RFX2 (ENSABRG00000013316) #22	ENSABRG00000013314	ENSABRG00000013304	DUS3L (ENSABRG00000013292) #28	NRTN (ENSABRG00000013286) #27	ENSABRG00000013284	ATCAY (ENSABRG00000013264)	ENSABRG00000013254
Duck	MODERN SPECIES	20	SF3A2 (ENSAPLG00000030775)	ENSAPLG00000016512	OAZ1 (ENSAPLG00000021664)	LINGO3 (ENSAPLG00000001535)	ENSAPLG00000011688	ENSAPLG00000001197	ACTL9 (ENSAPLG00000001413)	NFILZ (ENSAPLG00000002454)	ZAP70 (ENSAPLG00000002455)	ENSAPLG00000002709	MYO1F (ENSAPLG00000002919)	ENSAPLG00000003609	ACER1 (ENSAPLG00000003845) #18	MLLT1 (ENSAPLG00000003964) #20	ACSBG2 (ENSAPLG00000004090) #21	RFX2 (ENSAPLG00000004369) #22	ENSAPLG00000004633	ENSAPLG00000019194	DUS3L (ENSAPLG00000004636) #28	NRTN (ENSAPLG00000027910) #27	ENSAPLG00000001431	ATCAY (ENSAPLG00000004775)
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185.j	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00950000186319	ENSGT00940000159440
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00390000006809	ENSGT00440000039287	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185.j	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00960000189545	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000153424.a.a.d	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00530000063615.a	ENSGT00940000159004	ENSGT00940000159440	ENSGT00530000063841.b
Chicken	MODERN SPECIES	20	ENSGALG00010027879	OAZ1 (ENSGALG00010027877)	LINGO3 (ENSGALG00010028495)	ENSGALG00010028509	ENSGALG00010028505	ACTL9 (ENSGALG00010028469)	NFILZ (ENSGALG00010028553)	ZAP70 (ENSGALG00010028550)	ADAMTS10 (ENSGALG00010028549)	MYO1F (ENSGALG00010028548)	ZNF414 (ENSGALG00010028544)	ANP32B (ENSGALG00010028543)	ACER1 (ENSGALG00010028570) #18	MLLT1 (ENSGALG00010028568) #20	ACSBG2 (ENSGALG00010028562) #21	RFX2 (ENSGALG00010027873) #22	LARP6L (ENSGALG00010028423)	ENSGALG00010027104	DUS3L (ENSGALG00010027102) #28	NRTN (ENSGALG00010027847) #27	ENSGALG00010027838	ATCAY (ENSGALG00010027831)	NMRK2 (ENSGALG00010027821)	DAPK3 (ENSGALG00010027814)	EEF2 (ENSGALG00010027732)	PIAS4 (ENSGALG00010027113)	ENSGALG00010028424	ZBTB7A (ENSGALG00010028421)	CCDC94 (ENSGALG00010027116)	SHD (ENSGALG00010028506)	ENSGALG00010028417
Turkey	MODERN SPECIES	23	ENSMGAG00000003985	POLR2E (ENSMGAG00000003769)	ENSMGAG00000003801	ENSMGAG00000003788	ENSMGAG00000003863	ENSMGAG00000019922	ENSMGAG00000011153	ENSMGAG00000011162	ENSMGAG00000011170	DAPK3 (ENSMGAG00000021010)	ENSMGAG00000001488	ENSMGAG00000001526	ENSMGAG00000017646 #27	ENSMGAG00000015739	ENSMGAG00000001547 #28	ENSMGAG00000001572 #22	ENSMGAG00000001563	ENSMGAG00000001625 #21	ENSMGAG00000001671 #20	ENSMGAG00000017709 #20	ENSMGAG00000001715 #18	ENSMGAG00000001727	ZNF414 (ENSMGAG00000018540)	ENSMGAG00000001803	ENSMGAG00000001765	ENSMGAG00000019012	ENSMGAG00000001863	NFILZ (ENSMGAG00000022503)	ENSMGAG00000001919	ENSMGAG00000001942	ENSMGAG00000021453
Japanese quail	MODERN SPECIES	20	SF3A2 (ENSCJPG00005009860)	AMH (ENSCJPG00005009856)	OAZ1 (ENSCJPG00005009851)	LINGO3 (ENSCJPG00005009850)	ENSCJPG00005009849	ACTL9 (ENSCJPG00005009843)	NFILZ (ENSCJPG00005009841)	ZAP70 (ENSCJPG00005009839)	ADAMTS10 (ENSCJPG00005009838)	MYO1F (ENSCJPG00005009837)	ZNF414 (ENSCJPG00005009835)	ENSCJPG00005009834	ACER1 (ENSCJPG00005009833) #18	MLLT1 (ENSCJPG00005009832) #20	ACSBG2 (ENSCJPG00005009830) #21	RFX2 (ENSCJPG00005009826) #22	DUS3L (ENSCJPG00005009823) #28	NRTN (ENSCJPG00005009820) #27	ENSCJPG00005009818	ATCAY (ENSCJPG00005009817)	NMRK2 (ENSCJPG00005009783)	ENSCJPG00005009782	EEF2 (ENSCJPG00005009780)	PIAS4 (ENSCJPG00005009779)	ENSCJPG00005009778	ZBTB7A (ENSCJPG00005009777)	YJU2 (ENSCJPG00005009776)	SHD (ENSCJPG00005009775)	ENSCJPG00005009774	FSD1 (ENSCJPG00005009773)	ENSCJPG00005009767 #33
African ostrich	MODERN SPECIES	329					ENSSCUG00000005691	ACTL9 (ENSSCUG00000005689)	NFILZ (ENSSCUG00000005688)	ZAP70 (ENSSCUG00000005685)	ADAMTS10 (ENSSCUG00000005678)	MYO1F (ENSSCUG00000005665)	ENSSCUG00000005661	ENSSCUG00000005656	ACER1 (ENSSCUG00000005655) #18	MLLT1 (ENSSCUG00000005652) #20	ACSBG2 (ENSSCUG00000005650) #21	RFX2 (ENSSCUG00000005647) #22	DUS3L (ENSSCUG00000005643) #28
Australian saltwater crocodile	MODERN SPECIES	26	ENSCPRG00005009392	OAZ1 (ENSCPRG00005009394)	ENSCPRG00005009399	LINGO3 (ENSCPRG00005009405)	ENSCPRG00005009414	ENSCPRG00005009415	ENSCPRG00005009417	ZAP70 (ENSCPRG00005009419)	ADAMTS10 (ENSCPRG00005009438)	MYO1F (ENSCPRG00005009558)	ZNF414 (ENSCPRG00005009595)	ENSCPRG00005009599	ACER1 (ENSCPRG00005009603) #18	MLLT1 (ENSCPRG00005009615) #20	ACSBG2 (ENSCPRG00005009641) #21	RFX2 (ENSCPRG00005009653) #22	ENSCPRG00005009659	PRR22 (ENSCPRG00005009662)	DUS3L (ENSCPRG00005009665) #28
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00730000114280	ENSGT00940000159808	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Testudinoidea	ANCESTRAL SPECIES	18	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Emydidae	ANCESTRAL SPECIES	14	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00940000162661	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000164108.b.d	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Three-toed box turtle	MODERN SPECIES	92	AMH (ENSTMTG00000022619)	LINGO3 (ENSTMTG00000022614)	ACTL9 (ENSTMTG00000022612)	ENSTMTG00000022609	ENSTMTG00000022608	ZAP70 (ENSTMTG00000022599)	ENSTMTG00000022595	ENSTMTG00000022593	ENSTMTG00000022591	MYO1F (ENSTMTG00000022582)	ZNF414 (ENSTMTG00000022574)	ENSTMTG00000022571	ACER1 (ENSTMTG00000022566) #18	MLLT1 (ENSTMTG00000022560) #20	ACSBG2 (ENSTMTG00000022558) #21	RFX2 (ENSTMTG00000022549) #22	ENSTMTG00000022546	PRR22 (ENSTMTG00000022541)	DUS3L (ENSTMTG00000022539) #28	NRTN (ENSTMTG00000022537) #27	ENSTMTG00000022536	ATCAY (ENSTMTG00000022532)	NMRK2 (ENSTMTG00000022527)	DAPK3 (ENSTMTG00000022524)	EEF2 (ENSTMTG00000022520)	PIAS4 (ENSTMTG00000022514)	ZBTB7A (ENSTMTG00000022512)	MAP2K2 (ENSTMTG00000022510)	CREB3L3 (ENSTMTG00000022502)	ENSTMTG00000022498	SIRT6 (ENSTMTG00000022496)
painted turtle	MODERN SPECIES	712					ACTL9 (ENSCPBG00000011186)	NFILZ (ENSCPBG00000011185)	ENSCPBG00000011184	ZAP70 (ENSCPBG00000011182)	ADAMTS10 (ENSCPBG00000011174)	MYO1F (ENSCPBG00000011162)	ZNF414 (ENSCPBG00000011160)	ENSCPBG00000011159	ACER1 (ENSCPBG00000011158) #18	MLLT1 (ENSCPBG00000011153) #20	ACSBG2 (ENSCPBG00000011150) #21	RFX2 (ENSCPBG00000011147) #22	ENSCPBG00000011144	PRR22 (ENSCPBG00000011140)	DUS3L (ENSCPBG00000011136) #28	NRTN (ENSCPBG00000011135) #27	ENSCPBG00000011134	ATCAY (ENSCPBG00000011131)	NMRK2 (ENSCPBG00000011129)	DAPK3 (ENSCPBG00000011124)	EEF2 (ENSCPBG00000011117)	PIAS4 (ENSCPBG00000011114)	ZBTB7A (ENSCPBG00000011111)	MAP2K2 (ENSCPBG00000011109)	CREB3L3 (ENSCPBG00000011108)	ENSCPBG00000011105	SIRT6 (ENSCPBG00000011103)
Testudinidae	ANCESTRAL SPECIES	20	ENSGT01030000234564.a.a.b.b	ENSGT00940000157066	ENSGT00940000162661	ENSGT00440000039287	ENSGT00960000192150	ENSGT00940000163012	ENSGT00940000164108.b.c	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000166580	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Abingdon island giant tortoise	MODERN SPECIES				LINGO3 (ENSCABG00000000015)	ENSCABG00000000021	ENSCABG00000000044	ACTL9 (ENSCABG00000000147)	NFILZ (ENSCABG00000000156)	ZAP70 (ENSCABG00000000169)	ADAMTS10 (ENSCABG00000000218)	MYO1F (ENSCABG00000000392)	ZNF414 (ENSCABG00000000742)	ENSCABG00000000744	ACER1 (ENSCABG00000000748) #18	MLLT1 (ENSCABG00000000749) #20	ACSBG2 (ENSCABG00000000769) #21	RFX2 (ENSCABG00000000813) #22	ENSCABG00000001457	PRR22 (ENSCABG00000001462)	DUS3L (ENSCABG00000001466) #28	NRTN (ENSCABG00000001472) #27	ENSCABG00000001475	ATCAY (ENSCABG00000001480)	ENSCABG00000001505	ENSCABG00000001506	EEF2 (ENSCABG00000001509)	PIAS4 (ENSCABG00000001521)	ZBTB7A (ENSCABG00000001566)	MAP2K2 (ENSCABG00000001574)	CREB3L3 (ENSCABG00000001744)	ENSCABG00000001748	SIRT6 (ENSCABG00000001750)
Goode s thornscrub tortoise	MODERN SPECIES	14	OAZ1 (ENSGEVG00005010008)	ENSGEVG00005009986	LINGO3 (ENSGEVG00005009850)	ENSGEVG00005009829	ACTL9 (ENSGEVG00005009788)	NFILZ (ENSGEVG00005009711)	ZAP70 (ENSGEVG00005009658)	ADAMTS10 (ENSGEVG00005009230)	MYO1F (ENSGEVG00005009021)	ENSGEVG00005008954	ZNF414 (ENSGEVG00005008932)	ENSGEVG00005008905	ACER1 (ENSGEVG00005008854) #18	MLLT1 (ENSGEVG00005008772) #20	ACSBG2 (ENSGEVG00005008719) #21	RFX2 (ENSGEVG00005008484) #22	ENSGEVG00005008437	ENSGEVG00005008408	PRR22 (ENSGEVG00005008381)	DUS3L (ENSGEVG00005008360) #28	NRTN (ENSGEVG00005008340) #27	ENSGEVG00005008323	ATCAY (ENSGEVG00005008280)	NMRK2 (ENSGEVG00005008195)	DAPK3 (ENSGEVG00005008155)	EEF2 (ENSGEVG00005008117)	PIAS4 (ENSGEVG00005008086)	ZBTB7A (ENSGEVG00005008063)	MAP2K2 (ENSGEVG00005008031)	CREB3L3 (ENSGEVG00005007896)	ENSGEVG00005007845
Chinese turtle	MODERN SPECIES	1362																RFX2 (ENSPSIG00000005029) #22	PRR22 (ENSPSIG00000005022)	DUS3L (ENSPSIG00000004965) #28	NRTN (ENSPSIG00000004947) #27	ENSPSIG00000004904	ENSPSIG00000004873
Lepidosauria	ANCESTRAL SPECIES	33	ENSGT00390000005235	ENSGT00720000108823	ENSGT00390000006337	ENSGT00940000159808	ENSGT00440000039287.a.a	ENSGT00940000163012	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00550000075134 #28	ENSGT00950000182993.A.a #27	ENSGT00940000163125	ENSGT00940000158364	ENSGT00940000159842	ENSGT00940000154779.a.a	ENSGT00940000161753	ENSGT00940000154662	ENSGT01030000234539.a.a.a	ENSGT00940000162053	ENSGT00940000153487.b.a	ENSGT00940000159261	ENSGT01030000234534.B.a.a.a.a	ENSGT00940000160088
Episquamata	ANCESTRAL SPECIES	44									ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18	ENSGT00950000182907.b
Laterata	ANCESTRAL SPECIES	56	ENSGT00940000164644	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00940000163125	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18	ENSGT00950000182907.b	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Common wall lizard	MODERN SPECIES	9	CHAF1A (ENSPMRG00000022074)	ENSPMRG00000022084	SH3GL1 (ENSPMRG00000022093)	MPND (ENSPMRG00000022113)	STAP2 (ENSPMRG00000022142)	ENSPMRG00000022191	NMRK2 (ENSPMRG00000022201)	ATCAY (ENSPMRG00000022211)	ENSPMRG00000022218	NRTN (ENSPMRG00000022225) #27	ENSPMRG00000022226	DUS3L (ENSPMRG00000022231) #28	MLLT1 (ENSPMRG00000022237) #20	ACSBG2 (ENSPMRG00000022245) #21	ENSPMRG00000022255	RFX2 (ENSPMRG00000022305) #22	ENSPMRG00000022430	PRR22 (ENSPMRG00000022432)	ACER1 (ENSPMRG00000022435) #18	ENSPMRG00000022439	ANGPTL4 (ENSPMRG00000022446)	ENSPMRG00000022448	MARCHF2 (ENSPMRG00000022454)	ENSPMRG00000022458	ENSPMRG00000022463	TIMM44 (ENSPMRG00000022478)	CTXN1 (ENSPMRG00000022489)	ENSPMRG00000022496	FBN3 (ENSPMRG00000022515)	ENSPMRG00000022527	ENSPMRG00000022557
Argentine black and white tegu	MODERN SPECIES	109	ENSSMRG00000019637	ENSSMRG00000019636	ENSSMRG00000019635	ENSSMRG00000019634	NDUFA7 (ENSSMRG00000019633)	ENSSMRG00000019632	KANK3 (ENSSMRG00000019631)	NMRK2 (ENSSMRG00000019630)	ATCAY (ENSSMRG00000019629)	ENSSMRG00000019628	ENSSMRG00000019627	NRTN (ENSSMRG00000019626) #27	DUS3L (ENSSMRG00000019625) #28	MLLT1 (ENSSMRG00000019624) #20	ACSBG2 (ENSSMRG00000019531) #21	RFX2 (ENSSMRG00000019530) #22	PRR22 (ENSSMRG00000019529)	ACER1 (ENSSMRG00000019527) #18	ENSSMRG00000019526	ANGPTL4 (ENSSMRG00000019523)	ENSSMRG00000019521	MARCHF2 (ENSSMRG00000019520)	ENSSMRG00000019519	ENSSMRG00000019518	TIMM44 (ENSSMRG00000019517)	FBN3 (ENSSMRG00000017819)	CERS4 (ENSSMRG00000017801)	ENSSMRG00000017791	REEP6 (ENSSMRG00000017789)	ENSSMRG00000017788	ENSSMRG00000017787
Toxicofera	ANCESTRAL SPECIES	93										ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18
Elapidae	ANCESTRAL SPECIES	74									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18
Indian cobra	MODERN SPECIES		DIRAS1 (ENSNNAG00000001388)	SLC39A3 (ENSNNAG00000001405)	SGTA (ENSNNAG00000001423)	THOP1 (ENSNNAG00000001453)	ENSNNAG00000001485	LMNB2 (ENSNNAG00000001530)	LINGO3 (ENSNNAG00000001562)	TIMM13 (ENSNNAG00000001582)	ENSNNAG00000001597	TMPRSS9 (ENSNNAG00000001635)	ENSNNAG00000001671	LSM7 (ENSNNAG00000001693)	ADAMTSL5 (ENSNNAG00000001716)	DUS3L (ENSNNAG00000001743) #28	MLLT1 (ENSNNAG00000001761) #20	RFX2 (ENSNNAG00000001833) #22	PRR22 (ENSNNAG00000002060)	ENSNNAG00000002070	ENSNNAG00000002104	ENSNNAG00000002121
Elapidae_a	ANCESTRAL SPECIES	165									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18
Blue-lipped sea krait	MODERN SPECIES	5304															ACSBG2 (ENSLLTG00000007942) #21	RFX2 (ENSLLTG00000008022) #22
Acanthophiinae	ANCESTRAL SPECIES	156									ENSGT00940000159842.bc	ENSGT00940000158364	ENSGT00390000004172.s	ENSGT00950000182993.A.a #27	ENSGT00550000075134 #28	ENSGT00940000158800.f #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00390000016128	ENSGT00730000110920.b.a.a #18
Eastern brown snake	MODERN SPECIES	224						ENSPTXG00000016273	ENSPTXG00000016272	ENSPTXG00000016271	ENSPTXG00000016270	ATCAY (ENSPTXG00000016269)	ENSPTXG00000016268	ENSPTXG00000016267 #27	DUS3L (ENSPTXG00000016266) #28	MLLT1 (ENSPTXG00000016265) #20	ENSPTXG00000016264 #21	RFX2 (ENSPTXG00000016263) #22	PRR22 (ENSPTXG00000016262)	ENSPTXG00000016261 #18
tuatara	MODERN SPECIES	1127	ENSSPUG00000012084	ENSSPUG00000012073	ENSSPUG00000012066	ENSSPUG00000012064	ENSSPUG00000012054	ENSSPUG00000012048	ENSSPUG00000012039	ACTL9 (ENSSPUG00000012034)	ZAP70 (ENSSPUG00000012007)	ADAMTS10 (ENSSPUG00000011986)	MYO1F (ENSSPUG00000011896)	ZNF414 (ENSSPUG00000011869)	ENSSPUG00000011855	MLLT1 (ENSSPUG00000011834) #20	ENSSPUG00000011809 #21	RFX2 (ENSSPUG00000011275) #22	ENSSPUG00000011156	DUS3L (ENSSPUG00000011128) #28	NRTN (ENSSPUG00000011111) #27	ENSSPUG00000011097	ATCAY (ENSSPUG00000011081)	ENSSPUG00000011066	NMRK2 (ENSSPUG00000011060)	ENSSPUG00000011042	DAPK3 (ENSSPUG00000011029)	EEF2 (ENSSPUG00000011003)	PIAS4 (ENSSPUG00000010985)	ZBTB7A (ENSSPUG00000010974)	MAP2K2 (ENSSPUG00000010956)	CREB3L3 (ENSSPUG00000010942)	ENSSPUG00000010936
Anura	ANCESTRAL SPECIES	45							ENSGT00390000006809	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000159972	ENSGT00940000158588 #23	ENSGT00940000156466.c	ENSGT00390000007212	ENSGT00390000012434 #25	ENSGT00390000010184	ENSGT00950000182993.A.a #27	ENSGT00940000166580	ENSGT00530000063553.b.a #29	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00910000144227	ENSGT00390000006553
Frog	MODERN SPECIES		ENSXETG00000047391	oaz1 (ENSXETG00000013655)	lingo3 (ENSXETG00000013654)	ENSXETG00000047966	XB5727280 [provisional] (ENSXETG00000013652)	ENSXETG00000048067	ENSXETG00000042515	zap70 (ENSXETG00000009491)	adamts10 (ENSXETG00000009497)	myo1f (ENSXETG00000009509)	znf414 (ENSXETG00000037194)	anp32c (ENSXETG00000009516)	acer1 (ENSXETG00000021873) #18	mllt1 (ENSXETG00000021875) #20	acsbg2 (ENSXETG00000021876) #21	rfx2 (ENSXETG00000021877) #22	ENSXETG00000048263	slc1a6 (ENSXETG00000021879)	ranbp3 (ENSXETG00000025475) #23	caps (ENSXETG00000021881)	vmac (ENSXETG00000021884)	ndufa11 (ENSXETG00000021885) #25	med11 (ENSXETG00000045957)	nrtn (ENSXETG00000036233) #27	larp6-like.1 (ENSXETG00000021887)	lonp1 (ENSXETG00000021888) #29	rab11b.2 (ENSXETG00000021890)	marchf2 (ENSXETG00000021892)	rab11b.1 (ENSXETG00000025484)	angptl4 (ENSXETG00000021893)	ENSXETG00000046810
Leishan spiny toad	MODERN SPECIES		LONP1 (ENSLLEG00000007346) #29	ERI1 (ENSLLEG00000007305)	MFHAS1 (ENSLLEG00000007276)	ENSLLEG00000007120	CLDN23 (ENSLLEG00000007085)	ENSLLEG00000007070	TBC1D2 (ENSLLEG00000006855)	ELP1 (ENSLLEG00000006626)	APTX (ENSLLEG00000006561)	ENSLLEG00000006511	ENSLLEG00000006467	SMU1 (ENSLLEG00000006161)	ENSLLEG00000005989	ENSLLEG00000005958	ENSLLEG00000005911	RFX2 (ENSLLEG00000005486) #22	ENSLLEG00000005369	ENSLLEG00000005342	ENSLLEG00000005266	ENSLLEG00000005245	ENSLLEG00000005213	ENSLLEG00000005090	ENSLLEG00000005045	YTHDC1 (ENSLLEG00000004932)	ENSLLEG00000004899	ENSLLEG00000004862	ENSLLEG00000004826	COPS4 (ENSLLEG00000004806)	COQ2 (ENSLLEG00000004790)	ENSLLEG00000004774	HPSE (ENSLLEG00000004732)
Coelacanth	MODERN SPECIES	274						ENSLACG00000000418	ACTL9 (ENSLACG00000002671)	ZAP70 (ENSLACG00000007630)	ADAMTS10 (ENSLACG00000008726)	MYO1F (ENSLACG00000010079)	ENSLACG00000022472	ENSLACG00000010958	ACER1 (ENSLACG00000011275) #18	MLLT1 (ENSLACG00000011585) #20	ACSBG2 (ENSLACG00000011979) #21	RFX2 (ENSLACG00000012525) #22	SLC1A6 (ENSLACG00000012883)	RANBP3 (ENSLACG00000013387) #23	CAPS (ENSLACG00000013632) #24	VMAC (ENSLACG00000013726)	NDUFA11 (ENSLACG00000013860) #25	ENSLACG00000014322 #27	ENSLACG00000014893	ENSLACG00000022153	LONP1 (ENSLACG00000015087) #29	RPL36 (ENSLACG00000015161) ##30	LMNB2 (ENSLACG00000015242)	TMPRSS9 (ENSLACG00000015402)	SPPL2B (ENSLACG00000015569)	LSM7 (ENSLACG00000015700)	ENSLACG00000015723
Actinopterygii	ANCESTRAL SPECIES	46						ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000160221	ENSGT00390000018319.a.b.b.b	ENSGT00950000182964.a.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00940000160231	ENSGT00940000159037	ENSGT00950000183171.A.b.a.b	ENSGT01040000240503.A.a.b	ENSGT00940000161493	ENSGT00390000007991	ENSGT00530000063749.c.a	ENSGT00940000165115	ENSGT00390000003420.b
Neopterygii	ANCESTRAL SPECIES	124	ENSGT00940000165304	ENSGT00950000182916.b	ENSGT00390000005318.a	ENSGT00940000156470.u.a	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000160221	ENSGT00390000018319.a.b.b.b	ENSGT00950000182964.a.b.b.a	ENSGT00950000182964.a.b.b.b	ENSGT01100000263497.E.a.b	ENSGT00940000159915	ENSGT00530000063749.c.a	ENSGT00390000007991	ENSGT00940000161493	ENSGT00940000165051	ENSGT00940000168675	ENSGT00950000183171.A.b.a.b	ENSGT00940000159037	ENSGT00940000160231
Osteoglossocephalai	ANCESTRAL SPECIES	168	ENSGT00940000163250.C	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00550000075090	ENSGT00940000156349.d	ENSGT00940000179497	ENSGT00390000014781
Osteoglossiformes	DUPLICATION
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	288	ENSGT00940000161210	ENSGT00940000159560	ENSGT00940000165447	ENSGT00950000183104.B.a.b.a.a	ENSGT00940000163250.C	ENSGT00950000182916.b.a	ENSGT00390000005318.a	ENSGT00940000156470.u.a.e	ENSGT00940000154587.a.b.k	ENSGT01050000244898.a.a.a.a.f	ENSGT00390000006876	ENSGT00950000182907.b	ENSGT00730000110920.b.a.a.f #18	ENSGT00940000158800.i #20	ENSGT00940000155332.A.b #21	ENSGT01050000244879.a.a.a.c.a #22	ENSGT00940000160489.c
Asian bonytongue	MODERN SPECIES	17	uhrf1 (ENSSFOG00015015944)	FEM1A (ENSSFOG00015028310)	sin3b (ENSSFOG00015016043)	haus5 (ENSSFOG00015016090)	fzr1a (ENSSFOG00015016136)	ENSSFOG00015016197	ENSSFOG00015016220	mfsd12a (ENSSFOG00015016316)	CSNK1G2 (ENSSFOG00015016352)	MKNK2 (ENSSFOG00015016403)	mob3a (ENSSFOG00015031031)	znf414 (ENSSFOG00015016446)	ENSSFOG00015016471	MLLT1 (ENSSFOG00015016629) #20	acsbg2 (ENSSFOG00015016714) #21	rfx2 (ENSSFOG00015015884) #22	FCHO1 (ENSSFOG00015016929)	ENSSFOG00015019833	ENSSFOG00015030021	ENSSFOG00015018570	SOX14 (ENSSFOG00015018592)	KY (ENSSFOG00015018599)	hdlbpa (ENSSFOG00015018627)	septin2 (ENSSFOG00015018742)	FARP2 (ENSSFOG00015018789)	stk25a (ENSSFOG00015018854)	boka (ENSSFOG00015032426)	thap4 (ENSSFOG00015018893)	ENSSFOG00015030498	ENSSFOG00015025136	atg4b (ENSSFOG00015018911)
P. kingsleyae	MODERN SPECIES	168	FEM1A (ENSPKIG00000016096)	sin3b (ENSPKIG00000016126)	haus5 (ENSPKIG00000016198)	fzr1a (ENSPKIG00000016265)	ENSPKIG00000016343	ENSPKIG00000016358	mfsd12a (ENSPKIG00000016382)	CSNK1G2 (ENSPKIG00000016437)	MKNK2 (ENSPKIG00000016487)	MOB3A (ENSPKIG00000016541)	znf414 (ENSPKIG00000016580)	ENSPKIG00000016602	ACER1 (ENSPKIG00000016625) #18	MLLT1 (ENSPKIG00000016661) #20	acsbg2 (ENSPKIG00000016744) #21	rfx2 (ENSPKIG00000016844) #22	FCHO1 (ENSPKIG00000016921)
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.a.c.b #22
P. kingsleyae	MODERN SPECIES	4	ticam1 (ENSPKIG00000013407)	dohh (ENSPKIG00000013430)	ENSPKIG00000013453	ENSPKIG00000013559	csnk1g2b (ENSPKIG00000013782)	zgc:101100 (ENSPKIG00000013844)	rexo1 (ENSPKIG00000013884)	MKNK2 (ENSPKIG00000013963)	mob3a (ENSPKIG00000014032)	zap70 (ENSPKIG00000014109)	adamts10 (ENSPKIG00000014227)	myo1f (ENSPKIG00000014349)	acer1 (ENSPKIG00000014515) #18	MLLT1 (ENSPKIG00000014598) #20	acsbg2 (ENSPKIG00000014669) #21	rfx2 (ENSPKIG00000014708) #22	FCHO1 (ENSPKIG00000014760)	znf692 (ENSPKIG00000014868)	ENSPKIG00000014928	trabd2b (ENSPKIG00000014949)	FOXD2 (ENSPKIG00000014966)	foxe3 (ENSPKIG00000014975)	ENSPKIG00000014992	FAM78B (ENSPKIG00000015016)	notch2 (ENSPKIG00000015036)	sec22bb (ENSPKIG00000015103)	npl (ENSPKIG00000015152)	EDEM3 (ENSPKIG00000015241)	ENSPKIG00000015324	colgalt2b (ENSPKIG00000015349)	rgl1 (ENSPKIG00000015438)
Osteoglossiformes	ANCESTRAL SPECIES	21	ENSGT00940000163706	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b.b	ENSGT00940000156470.u.a.f	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.l	ENSGT01050000244898.a.a.a.a.e	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a.e #18	ENSGT00940000158800.j #20	ENSGT00940000155332.A.a #21	ENSGT01050000244879.a.a.a.d #22	ENSGT00940000160489.d	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b	ENSGT00950000182827.C.b.e	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00940000164993.h
Asian bonytongue	MODERN SPECIES	24	tax1bp3 (ENSSFOG00015024929)	hsh2d (ENSSFOG00015019079)	RAB8A (ENSSFOG00015019045)	ENSSFOG00015019031	tpm4a (ENSSFOG00015027692)	csnk1g2b (ENSSFOG00015001156)	rexo1 (ENSSFOG00015001227)	MKNK2 (ENSSFOG00015001269)	ENSSFOG00015001332	zap70 (ENSSFOG00015001357)	adamts10 (ENSSFOG00015001432)	myo1f (ENSSFOG00015001538)	acer1 (ENSSFOG00015001670) #18	MLLT1 (ENSSFOG00015001697) #20	acsbg2 (ENSSFOG00015001707) #21	RFX2 (ENSSFOG00015001763) #22	ENSSFOG00015001887	ENSSFOG00015032403	ENSSFOG00015001909	ENSSFOG00015001913	trabd2b (ENSSFOG00015001921)	ENSSFOG00015001956	foxe3 (ENSSFOG00015030464)	ENSSFOG00015001995	FAM78B (ENSSFOG00015032449)	slc35a3a (ENSSFOG00015029638)	notch2 (ENSSFOG00015002074)	sec22bb (ENSSFOG00015002089)	npl (ENSSFOG00015002121)	EDEM3 (ENSSFOG00015002175)	ENSSFOG00015002257
Clupeocephala	ANCESTRAL SPECIES	25	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00940000163540	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Euteleosteomorpha	ANCESTRAL SPECIES	39	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	55	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g	ENSGT00940000161911
Huchen	MODERN SPECIES	116	OSBPL1A (ENSHHUG00000022411)	ENSHHUG00000022566	dohh (ENSHHUG00000022574)	ENSHHUG00000022579	csnk1g2b (ENSHHUG00000022594)	zgc:101100 (ENSHHUG00000022621)	rexo1 (ENSHHUG00000022628)	mknk2b (ENSHHUG00000022698)	mob3a (ENSHHUG00000022781)	zap70 (ENSHHUG00000022788)	adamts10 (ENSHHUG00000022828)	myo1f (ENSHHUG00000022919)	ENSHHUG00000023573	MLLT1 (ENSHHUG00000023574) #20	acsbg2 (ENSHHUG00000023602) #21	rfx2 (ENSHHUG00000023673) #22	FCHO1 (ENSHHUG00000023884)	ENSHHUG00000023903	ENSHHUG00000023907	trabd2b (ENSHHUG00000023954)	ENSHHUG00000023959	foxe3 (ENSHHUG00000023960)	ENSHHUG00000023961	FAM78B (ENSHHUG00000023964)	slc35a3a (ENSHHUG00000023965)	ENSHHUG00000023970	sec22bb (ENSHHUG00000024045)	EDEM3 (ENSHHUG00000024155)	ENSHHUG00000024606	colgalt2b (ENSHHUG00000024610)	ENSHHUG00000024689
Salmoninae_a	ANCESTRAL SPECIES	9	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g.a	ENSGT00940000156012.g.b
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000161645.a.b	ENSGT00940000162270.l	ENSGT00940000160589	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00530000063604.B.f	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000161645.a.b	ENSGT00940000162270.l	ENSGT00940000160589	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00530000063604.B.f	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000157611.g
Coho salmon	MODERN SPECIES	1	OSBPL1A (ENSOKIG00005044602)	dohh (ENSOKIG00005044565)	ENSOKIG00005044560	ENSOKIG00005044512	csnk1g2b (ENSOKIG00005044273)	zgc:101100 (ENSOKIG00005044246)	rexo1 (ENSOKIG00005044126)	mknk2b (ENSOKIG00005043977)	mob3a (ENSOKIG00005043906)	zap70 (ENSOKIG00005043589)	adamts10 (ENSOKIG00005043063)	myo1f (ENSOKIG00005041980)	ENSOKIG00005041835	MLLT1 (ENSOKIG00005041829) #20	acsbg2 (ENSOKIG00005039904) #21	rfx2 (ENSOKIG00005038974) #22	ENSOKIG00005038661	ENSOKIG00005038598	trabd2b (ENSOKIG00005038587)	foxd2 (ENSOKIG00005038584)	foxe3 (ENSOKIG00005038574)	ENSOKIG00005038561	FAM78B (ENSOKIG00005038555)	slc35a3a (ENSOKIG00005038524)	ENSOKIG00005036482	sec22bb (ENSOKIG00005036343)	EDEM3 (ENSOKIG00005034346)	zgc:92140 (ENSOKIG00005034264)	colgalt2b (ENSOKIG00005033835)	ENSOKIG00005033797	rgl1 (ENSOKIG00005033524)
Chinook salmon	MODERN SPECIES		OSBPL1A (ENSOTSG00005019172)	dohh (ENSOTSG00005019136)	ENSOTSG00005019135	ENSOTSG00005019134	csnk1g2b (ENSOTSG00005016138)	zgc:101100 (ENSOTSG00005016130)	rexo1 (ENSOTSG00005016121)	mknk2b (ENSOTSG00005016120)	mob3a (ENSOTSG00005016118)	zap70 (ENSOTSG00005016103)	adamts10 (ENSOTSG00005016101)	myo1f (ENSOTSG00005006477)	ENSOTSG00005006441	MLLT1 (ENSOTSG00005006436) #20	acsbg2 (ENSOTSG00005001608) #21	rfx2 (ENSOTSG00005000590) #22	ENSOTSG00005000585	FCHO1 (ENSOTSG00005000584)	ENSOTSG00005000555	trabd2b (ENSOTSG00005000549)	ENSOTSG00005000546	foxe3 (ENSOTSG00005000542)	CMPK1 (ENSOTSG00005000526)	FAM78B (ENSOTSG00005000524)	slc35a3a (ENSOTSG00005000521)	ENSOTSG00005000498	sec22bb (ENSOTSG00005000484)	npl (ENSOTSG00005000477)	EDEM3 (ENSOTSG00005000300)	zgc:92140 (ENSOTSG00005000290)	colgalt2b (ENSOTSG00005000273)
Rainbow trout	MODERN SPECIES	22	ENSOMYG00000068827	csnk1g2b (ENSOMYG00000016363)	zgc:101100 (ENSOMYG00000016316)	rexo1 (ENSOMYG00000016208)	mknk2b (ENSOMYG00000015307)	mob3a (ENSOMYG00000015179)	zap70 (ENSOMYG00000015083)	ENSOMYG00000055289	adamts10 (ENSOMYG00000014266)	myo1f (ENSOMYG00000013020)	ENSOMYG00000012771	MLLT1 (ENSOMYG00000012739) #20	ENSOMYG00000060138	acsbg2 (ENSOMYG00000010903) #21	ENSOMYG00000068838	rfx2 (ENSOMYG00000008539) #22	ENSOMYG00000006703	ENSOMYG00000005782	trabd2b (ENSOMYG00000005723)	foxd2 (ENSOMYG00000005681)	foxe3 (ENSOMYG00000005638)	ENSOMYG00000005624	ENSOMYG00000005617	ENSOMYG00000077135	slc35a3a (ENSOMYG00000005581)	ENSOMYG00000004919	sec22bb (ENSOMYG00000004335)	ENSOMYG00000070316	ENSOMYG00000003138	ENSOMYG00000002527	colgalt2b (ENSOMYG00000002201)
Salmo	ANCESTRAL SPECIES	20	ENSGT00990000204641.b.b	ENSGT00940000155295.y.j	ENSGT00940000165304.d.a	ENSGT00950000182916.b.f	ENSGT00940000156470.u.a.d	ENSGT00940000155505.b.e	ENSGT00940000165897.d	ENSGT00940000154587.a.b.u.b	ENSGT01050000244898.a.a.a.a.k.b	ENSGT00940000159185.c	ENSGT00940000158404.b	ENSGT00940000158870.cb.b	ENSGT00940000169953	ENSGT00940000158800.cb.a #20	ENSGT00940000155332.A.l #21	ENSGT01050000244879.a.a.a.e #22	ENSGT00940000160489.g	ENSGT00940000160259.g	ENSGT00940000165000.a.a	ENSGT00940000157140.b.a.b.a.c	ENSGT00940000162270.l	ENSGT00940000163540.j	ENSGT00390000018059.b.a.b	ENSGT00950000182827.C.b.a	ENSGT00940000155030.sc	ENSGT00940000156349.c.d	ENSGT00940000159391.b	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p.c	ENSGT00940000156012.g.a	ENSGT00940000161911
Atlantic salmon	MODERN SPECIES	15	ttc39c (ENSSSAG00000108341)	ENSSSAG00000046495	dohh (ENSSSAG00000049052)	ENSSSAG00000109617	csnk1g2b (ENSSSAG00000049477)	zgc:101100 (ENSSSAG00000082428)	rexo1 (ENSSSAG00000055373)	mknk2b (ENSSSAG00000055516)	MOL2A (ENSSSAG00000058254)	zap70 (ENSSSAG00000058389)	adamts10 (ENSSSAG00000060607)	myo1f (ENSSSAG00000063313)	ENSSSAG00000067427	MLLT1 (ENSSSAG00000067432) #20	acsbg2 (ENSSSAG00000067459) #21	rfx2 (ENSSSAG00000067771) #22	ENSSSAG00000070105	ENSSSAG00000070202	trabd2b (ENSSSAG00000070206)	ENSSSAG00000102893	foxe3 (ENSSSAG00000110499)	ENSSSAG00000070212	ENSSSAG00000101357	slc35a3a (ENSSSAG00000095541)	ENSSSAG00000070229	sec22bb (ENSSSAG00000089571)	ENSSSAG00000070326	zgc:92140 (ENSSSAG00000071110)	colgalt2b (ENSSSAG00000072298)	rgl1 (ENSSSAG00000098678)	rgl1 (ENSSSAG00000068385)
River trout	MODERN SPECIES	33	OSBPL1A (ENSSTUG00000021734)	dohh (ENSSTUG00000022045)	ENSSTUG00000022062	ENSSTUG00000022183	csnk1g2b (ENSSTUG00000022202)	zgc:101100 (ENSSTUG00000022852)	rexo1 (ENSSTUG00000022867)	mknk2b (ENSSTUG00000023091)	mob3a (ENSSTUG00000023905)	zap70 (ENSSTUG00000023942)	adamts10 (ENSSTUG00000024186)	myo1f (ENSSTUG00000024894)	ENSSTUG00000029467	MLLT1 (ENSSTUG00000029569) #20	acsbg2 (ENSSTUG00000029674) #21	rfx2 (ENSSTUG00000030823) #22	FCHO1 (ENSSTUG00000000933)	ENSSTUG00000001016	trabd2b (ENSSTUG00000001035)	ENSSTUG00000001039	foxe3 (ENSSTUG00000001041)	ENSSTUG00000001053	FAM78B (ENSSTUG00000001101)	slc35a3a (ENSSTUG00000001103)	ENSSTUG00000001112	sec22bb (ENSSTUG00000001196)	EDEM3 (ENSSTUG00000001227)	zgc:92140 (ENSSTUG00000001326)	colgalt2b (ENSSTUG00000001375)	ENSSTUG00000001705	rgl1 (ENSSTUG00000001767)
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00940000165304.d.b	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.h.a
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.h.a
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a.a	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B.e	ENSGT00940000159391.a	ENSGT00940000164993.h.a	ENSGT01030000234558.C.p.d
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000165304.d.b	ENSGT00980000201079	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000161645.a.a	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B.e	ENSGT00940000159391.a	ENSGT00940000164993.h.a	ENSGT01030000234558.C.p.d
Chinook salmon	MODERN SPECIES	29	rgl1 (ENSOTSG00005042428)	ENSOTSG00005042439	colgalt2b (ENSOTSG00005042444)	ENSOTSG00005042669	EDEM3 (ENSOTSG00005042670)	npl (ENSOTSG00005042671)	sec22bb (ENSOTSG00005042672)	ENSOTSG00005042673	slc35a3a (ENSOTSG00005044237)	FAM78B (ENSOTSG00005044238)	foxe3 (ENSOTSG00005044239)	foxd2 (ENSOTSG00005044240)	trabd2b (ENSOTSG00005044241)	ENSOTSG00005044242	ENSOTSG00005044244	rfx2 (ENSOTSG00005044249) #22	ENSOTSG00005044262	ENSOTSG00005044263 #21	acsbg2 (ENSOTSG00005044264) #21	myo1f (ENSOTSG00005044266)	MLLT1 (ENSOTSG00005027970) #20	ENSOTSG00005027971	ENSOTSG00005027972	ENSOTSG00005027974	ENSOTSG00005027975	mob3a (ENSOTSG00005027976)	zap70 (ENSOTSG00005027981)	ENSOTSG00005028165	rexo1 (ENSOTSG00005028166)	ENSOTSG00005028168	zgc:101100 (ENSOTSG00005028169)
Coho salmon	MODERN SPECIES	4	ENSOKIG00005039510	ENSOKIG00005039549	MFSD12 (ENSOKIG00005039690)	csnk1g2b (ENSOKIG00005039846)	zgc:101100 (ENSOKIG00005040146)	rexo1 (ENSOKIG00005040161)	mknk2b (ENSOKIG00005040517)	ENSOKIG00005043317	mob3a (ENSOKIG00005043325)	zap70 (ENSOKIG00005043407)	adamts10 (ENSOKIG00005043773)	myo1f (ENSOKIG00005044305)	acer1 (ENSOKIG00005045889) #18	MLLT1 (ENSOKIG00005045895) #20	acsbg2 (ENSOKIG00005045943) #21	rfx2 (ENSOKIG00005032940) #22	FCHO1 (ENSOKIG00005033054)	ENSOKIG00005033096	ENSOKIG00005033113	trabd2b (ENSOKIG00005033150)	foxd2 (ENSOKIG00005033158)	foxe3 (ENSOKIG00005033170)	ENSOKIG00005033183	FAM78B (ENSOKIG00005033207)	slc35a3a (ENSOKIG00005033216)	ENSOKIG00005033241	ENSOKIG00005033489	sec22bb (ENSOKIG00005033505)	npl (ENSOKIG00005033531)	EDEM3 (ENSOKIG00005033692)	ENSOKIG00005035789
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000012314	ENSOMYG00000012222	ENSOMYG00000012052	ENSOMYG00000065433	csnk1g2b (ENSOMYG00000011813)	zgc:101100 (ENSOMYG00000060472)	rexo1 (ENSOMYG00000011649)	mknk2b (ENSOMYG00000009233)	mob3a (ENSOMYG00000008460)	zap70 (ENSOMYG00000008417)	adamts10 (ENSOMYG00000008201)	myo1f (ENSOMYG00000006683)	acer1 (ENSOMYG00000004710) #18	MLLT1 (ENSOMYG00000004611) #20	acsbg2 (ENSOMYG00000004414) #21	rfx2 (ENSOMYG00000003657) #22	ENSOMYG00000003108	ENSOMYG00000003018	ENSOMYG00000003007	ENSOMYG00000057606	trabd2b (ENSOMYG00000002995)	foxd2 (ENSOMYG00000002982)	foxe3 (ENSOMYG00000002965)	ENSOMYG00000002955	slc35a3a (ENSOMYG00000002901)	ENSOMYG00000002728	sec22bb (ENSOMYG00000002343)	npl (ENSOMYG00000002323)	ENSOMYG00000002237	zgc:92140 (ENSOMYG00000048627)	colgalt2b (ENSOMYG00000001896)
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000165304.d.b	ENSGT00950000182916.b.e	ENSGT00390000005318.a.a.a	ENSGT01070000254699.b	ENSGT00940000156470.u.a.c	ENSGT00940000155505.b.f	ENSGT00940000165897.c	ENSGT00940000154587.a.b.u.a	ENSGT01050000244898.a.a.a.a.k.a	ENSGT00940000159185.d	ENSGT00940000158404.a.a	ENSGT00940000158870.cb.a	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.cb.b #20	ENSGT00940000155332.A.k #21	ENSGT01050000244879.a.a.a.f #22	ENSGT00940000160489.h	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.h	ENSGT00940000165000.a.b	ENSGT00940000157140.b.a.b.a.d	ENSGT00940000162270.k	ENSGT01060000253520	ENSGT00390000018059.b.a.a	ENSGT00950000182827.C.b.b	ENSGT00940000155030.rc	ENSGT00940000156349.c.c	ENSGT00530000063604.B	ENSGT00940000159391.a	ENSGT00940000164993.g
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000038784	ENSSSAG00000119538	ENSSSAG00000082093	ENSSSAG00000121571	csnk1g2b (ENSSSAG00000029722)	zgc:101100 (ENSSSAG00000084310)	rexo1 (ENSSSAG00000027611)	mknk2b (ENSSSAG00000015810)	MOL2A (ENSSSAG00000015743)	zap70 (ENSSSAG00000015668)	adamts10 (ENSSSAG00000015231)	myo1f (ENSSSAG00000005548)	acer1 (ENSSSAG00000089657) #18	MLLT1 (ENSSSAG00000005316) #20	acsbg2 (ENSSSAG00000072046) #21	rfx2 (ENSSSAG00000071450) #22	ENSSSAG00000071378	ENSSSAG00000086480	ENSSSAG00000071365	trabd2b (ENSSSAG00000071360)	ENSSSAG00000071357	foxe3 (ENSSSAG00000119022)	ENSSSAG00000013653	ENSSSAG00000071353	S35A3 (ENSSSAG00000071350)	ENSSSAG00000071276	npl (ENSSSAG00000071259)	edem3 (ENSSSAG00000071138)	colgalt2b (ENSSSAG00000069716)	ENSSSAG00000069658	ENSSSAG00000073011
River trout	MODERN SPECIES	14	ENSSTUG00000044896	MFSD12 (ENSSTUG00000044667)	ENSSTUG00000044653	csnk1g2b (ENSSTUG00000044368)	zgc:101100 (ENSSTUG00000044345)	rexo1 (ENSSTUG00000044317)	mknk2b (ENSSTUG00000043323)	mob3a (ENSSTUG00000043251)	zap70 (ENSSTUG00000043190)	ENSSTUG00000043175	adamts10 (ENSSTUG00000042771)	myo1f (ENSSTUG00000042330)	acer1 (ENSSTUG00000042126) #18	MLLT1 (ENSSTUG00000042115) #20	acsbg2 (ENSSTUG00000040975) #21	rfx2 (ENSSTUG00000040583) #22	FCHO1 (ENSSTUG00000039051)	ENSSTUG00000038993	ENSSTUG00000038987	ENSSTUG00000038968	trabd2b (ENSSTUG00000038963)	FOXD2 (ENSSTUG00000038958)	foxe3 (ENSSTUG00000038952)	FAM78B (ENSSTUG00000038941)	slc35a3a (ENSSTUG00000038929)	NOTCH2 (ENSSTUG00000038755)	sec22bb (ENSSTUG00000038729)	npl (ENSSTUG00000038701)	EDEM3 (ENSSTUG00000036687)	ENSSTUG00000036611	colgalt2b (ENSSTUG00000036356)
Huchen	MODERN SPECIES	491	ENSHHUG00000049069	MFSD12 (ENSHHUG00000049047)	csnk1g2b (ENSHHUG00000048933)	zgc:101100 (ENSHHUG00000048924)	rexo1 (ENSHHUG00000048899)	mknk2b (ENSHHUG00000048852)	mob3a (ENSHHUG00000048847)	zap70 (ENSHHUG00000048767)	ENSHHUG00000048762	adamts10 (ENSHHUG00000048726)	myo1f (ENSHHUG00000048611)	acer1 (ENSHHUG00000048604) #18	ENSHHUG00000048599 #20	MLLT1 (ENSHHUG00000048596) #20	acsbg2 (ENSHHUG00000048549) #21	rfx2 (ENSHHUG00000048514) #22	FCHO1 (ENSHHUG00000048488)	ENSHHUG00000048479	ENSHHUG00000048443	trabd2b (ENSHHUG00000048439)	ENSHHUG00000048435	ENSHHUG00000048430
Northern pike	MODERN SPECIES	7	OSBPL1A (ENSELUG00000013634)	dohh (ENSELUG00000013668)	ENSELUG00000013777	MFSD12 (ENSELUG00000013866)	csnk1g2b (ENSELUG00000013973)	zgc:101100 (ENSELUG00000014000)	rexo1 (ENSELUG00000014078)	mknk2b (ENSELUG00000014125)	mob3a (ENSELUG00000014142)	zap70 (ENSELUG00000014203)	adamts10 (ENSELUG00000014328)	myo1f (ENSELUG00000014496)	acer1 (ENSELUG00000014533) #18	mllt1b (ENSELUG00000014600) #20	acsbg2 (ENSELUG00000014696) #21	rfx2 (ENSELUG00000014877) #22	FCHO1 (ENSELUG00000015040)	ENSELUG00000015061	ENSELUG00000015150	trabd2b (ENSELUG00000015227)	foxd2 (ENSELUG00000015240)	foxe3 (ENSELUG00000015256)	FAM78B (ENSELUG00000015267)	slc35a3a (ENSELUG00000015289)	notch2 (ENSELUG00000015318)	sec22bb (ENSELUG00000015377)	npl (ENSELUG00000015432)	EDEM3 (ENSELUG00000015492)	ENSELUG00000033188	colgalt2b (ENSELUG00000015546)	rgl1 (ENSELUG00000015605)
Acanthomorphata	ANCESTRAL SPECIES	91	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886
Euacanthomorphacea	ANCESTRAL SPECIES	59	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00530000063646.a	ENSGT00940000154149.b.a.g.b	ENSGT00390000003574.a	ENSGT00390000008371.a	ENSGT00390000014886
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254
Tiger tail seahorse	MODERN SPECIES	242	babam1 (ENSHCOG00000007500)	nr2f6b (ENSHCOG00000007487)	ENSHCOG00000007475	MFSD12 (ENSHCOG00000000596)	csnk1g2b (ENSHCOG00000007442)	zgc:101100 (ENSHCOG00000007406)	rexo1 (ENSHCOG00000000248)	mknk2b (ENSHCOG00000000235)	mob3a (ENSHCOG00000007245)	zap70 (ENSHCOG00000007230)	adamts10 (ENSHCOG00000007179)	myo1f (ENSHCOG00000007131)	acer1 (ENSHCOG00000007036) #18	mllt1b (ENSHCOG00000006999) #20	acsbg2 (ENSHCOG00000006973) #21	rfx2 (ENSHCOG00000006936) #22	ENSHCOG00000006813	prg4b (ENSHCOG00000006734)	tprb (ENSHCOG00000006718)	pdcb (ENSHCOG00000006701)	ENSHCOG00000006697	ptgs2b (ENSHCOG00000006679)	PLA2G4A (ENSHCOG00000006631)	arpc5b (ENSHCOG00000006582)	ENSHCOG00000006545	PDE4B (ENSHCOG00000006349)	SGIP1 (ENSHCOG00000006326)	ENSHCOG00000006288	pars2 (ENSHCOG00000006282)	ttc4 (ENSHCOG00000006269)	ENSHCOG00000006266
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Climbing perch	MODERN SPECIES	17	nr2f6b (ENSATEG00000025377)	ENSATEG00000017528	ENSATEG00000017538	csnk1g2b (ENSATEG00000017578)	zgc:101100 (ENSATEG00000017632)	rexo1 (ENSATEG00000017639)	mknk2b (ENSATEG00000017680)	mob3a (ENSATEG00000017693)	zap70 (ENSATEG00000017719)	adamts10 (ENSATEG00000017768)	myo1f (ENSATEG00000017840)	acer1 (ENSATEG00000018000) #18	ENSATEG00000018017	MLLT1 (ENSATEG00000018031) #20	acsbg2 (ENSATEG00000018143) #21	rfx2 (ENSATEG00000018206) #22	ENSATEG00000018311	ENSATEG00000018352	tprb (ENSATEG00000018375)	pdcb (ENSATEG00000018481)	ptgs2b (ENSATEG00000018490)	PLA2G4A (ENSATEG00000018531)	arpc5b (ENSATEG00000005041)	ENSATEG00000018805	ivns1abpa (ENSATEG00000018892)	ENSATEG00000018946	ENSATEG00000018969	ENSATEG00000029942	ENSATEG00000019054	ENSATEG00000019254	ENSATEG00000025634
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000025393	nr2f6b (ENSBSLG00000025113)	MFSD12 (ENSBSLG00000025105)	csnk1g2b (ENSBSLG00000024917)	zgc:101100 (ENSBSLG00000024877)	ENSBSLG00000024874	rexo1 (ENSBSLG00000024871)	mknk2b (ENSBSLG00000024807)	mob3a (ENSBSLG00000024797)	zap70 (ENSBSLG00000024742)	adamts10 (ENSBSLG00000024651)	myo1f (ENSBSLG00000024477)	acer1 (ENSBSLG00000024437) #18	mllt1b (ENSBSLG00000024420) #20	acsbg2 (ENSBSLG00000024278) #21	rfx2 (ENSBSLG00000024149) #22	FCHO1 (ENSBSLG00000023913)	prg4b (ENSBSLG00000023817)	tprb (ENSBSLG00000023511)	pdcb (ENSBSLG00000023437)	ptgs2b (ENSBSLG00000022926)	PLA2G4A (ENSBSLG00000021416)	arpc5b (ENSBSLG00000021235)	ENSBSLG00000021063	ivns1abpa (ENSBSLG00000020495)	ENSBSLG00000020490	anos1b (ENSBSLG00000020466)	ENSBSLG00000020461	ENSBSLG00000020453	ENSBSLG00000020448	PDE4B (ENSBSLG00000020398)
Zig-zag eel	MODERN SPECIES	18	nr2f6b (ENSMAMG00000007171)	ENSMAMG00000007182	ENSMAMG00000007193	ENSMAMG00000026740	csnk1g2b (ENSMAMG00000007225)	zgc:101100 (ENSMAMG00000007249)	rexo1 (ENSMAMG00000007267)	mknk2b (ENSMAMG00000007284)	mob3a (ENSMAMG00000007296)	zap70 (ENSMAMG00000007310)	adamts10 (ENSMAMG00000007350)	myo1f (ENSMAMG00000007412)	acer1 (ENSMAMG00000007542) #18	MLLT1 (ENSMAMG00000007562) #20	acsbg2 (ENSMAMG00000007602) #21	rfx2 (ENSMAMG00000007645) #22	ENSMAMG00000007794	prg4b (ENSMAMG00000007891)	tprb (ENSMAMG00000007922)	pdcb (ENSMAMG00000008199)	ptgs2b (ENSMAMG00000008217)	PLA2G4A (ENSMAMG00000008256)	arpc5b (ENSMAMG00000027530)	ENSMAMG00000008367	ivns1abpa (ENSMAMG00000008599)	ENSMAMG00000027719	ENSMAMG00000008644	ENSMAMG00000008671	ENSMAMG00000008712	ENSMAMG00000008755	ENSMAMG00000008829
Carangaria	ANCESTRAL SPECIES	7	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Seriola	ANCESTRAL SPECIES		ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Yellowtail amberjack	MODERN SPECIES	3236									mob3a (ENSSLDG00000006245)	zap70 (ENSSLDG00000006213)	adamts10 (ENSSLDG00000006157)	myo1f (ENSSLDG00000006076)	acer1 (ENSSLDG00000006061) #18	mllt1b (ENSSLDG00000006004) #20	acsbg2 (ENSSLDG00000005964) #21	rfx2 (ENSSLDG00000005856) #22	FCHO1 (ENSSLDG00000005759)	prg4b (ENSSLDG00000005684)	tprb (ENSSLDG00000004801)	pdcb (ENSSLDG00000004588)	ptgs2b (ENSSLDG00000004537)	PLA2G4A (ENSSLDG00000004424)	arpc5b (ENSSLDG00000004389)	ENSSLDG00000003997	ivns1abpa (ENSSLDG00000003871)	ENSSLDG00000003821	anos1b (ENSSLDG00000003777)	ENSSLDG00000003734	PDE4B (ENSSLDG00000003622)	SGIP1 (ENSSLDG00000003534)	ENSSLDG00000003514
Greater amberjack	MODERN SPECIES		ENSSDUG00000010729	nr2f6b (ENSSDUG00000010748)	ENSSDUG00000010764	MFSD12 (ENSSDUG00000010780)	csnk1g2b (ENSSDUG00000010799)	zgc:101100 (ENSSDUG00000010853)	rexo1 (ENSSDUG00000010872)	mknk2b (ENSSDUG00000010893)	mob3a (ENSSDUG00000010929)	zap70 (ENSSDUG00000010940)	adamts10 (ENSSDUG00000010968)	myo1f (ENSSDUG00000011023)	acer1 (ENSSDUG00000011086) #18	mllt1b (ENSSDUG00000011105) #20	acsbg2 (ENSSDUG00000011128) #21	rfx2 (ENSSDUG00000011186) #22	FCHO1 (ENSSDUG00000011341)	prg4b (ENSSDUG00000011378)	tprb (ENSSDUG00000011451)	pdcb (ENSSDUG00000011874)	ptgs2b (ENSSDUG00000011896)	PLA2G4A (ENSSDUG00000011954)	arpc5b (ENSSDUG00000012029)	HMCN1 (ENSSDUG00000012070)	ivns1abpa (ENSSDUG00000012273)	ENSSDUG00000012345	ENSSDUG00000012376	ENSSDUG00000012406	PDE4B (ENSSDUG00000012442)	SGIP1 (ENSSDUG00000012569)	ENSSDUG00000012612
Barramundi perch	MODERN SPECIES	22	ENSLCAG00010007217	MFSD12 (ENSLCAG00010007229)	csnk1g2b (ENSLCAG00010007276)	zgc:101100 (ENSLCAG00010007341)	rexo1 (ENSLCAG00010007348)	mknk2b (ENSLCAG00010007353)	mob3a (ENSLCAG00010007373)	zap70 (ENSLCAG00010007388)	adamts10 (ENSLCAG00010007450)	myo1f (ENSLCAG00010007644)	acer1 (ENSLCAG00010007734) #18	ENSLCAG00010007735 #20	ENSLCAG00010007738 #20	MLLT1 (ENSLCAG00010007740) #20	acsbg2 (ENSLCAG00010007798) #21	rfx2 (ENSLCAG00010008058) #22	FCHO1 (ENSLCAG00010008111)	ENSLCAG00010008124	tprb (ENSLCAG00010008223)	pdcb (ENSLCAG00010008431)	ptgs2b (ENSLCAG00010008447)	PLA2G4A (ENSLCAG00010008575)	arpc5b (ENSLCAG00010009074)	HMCN1 (ENSLCAG00010009084)	ivns1abpa (ENSLCAG00010009110)	anos1b (ENSLCAG00010009167)	ENSLCAG00010009179	PDE4B (ENSLCAG00010009202)	SGIP1 (ENSLCAG00010009243)	ENSLCAG00010009264	pars2 (ENSLCAG00010009267)
Pleuronectoidei	ANCESTRAL SPECIES	20	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Turbot	MODERN SPECIES	3	babam1 (ENSSMAG00000020939)	nr2f6b (ENSSMAG00000020934)	ENSSMAG00000020925	csnk1g2b (ENSSMAG00000020921)	zgc:101100 (ENSSMAG00000020920)	rexo1 (ENSSMAG00000020919)	mknk2b (ENSSMAG00000020917)	mob3a (ENSSMAG00000020916)	zap70 (ENSSMAG00000020913)	adamts10 (ENSSMAG00000020907)	myo1f (ENSSMAG00000020895)	acer1 (ENSSMAG00000020892) #18	ENSSMAG00000023627 #20	MLLT1 (ENSSMAG00000020889) #20	acsbg2 (ENSSMAG00000020881) #21	rfx2 (ENSSMAG00000020840) #22	ENSSMAG00000020818	prg4b (ENSSMAG00000020813)	tprb (ENSSMAG00000020792)	pdcb (ENSSMAG00000020791)	ptgs2b (ENSSMAG00000020788)	PLA2G4A (ENSSMAG00000020783)	arpc5b (ENSSMAG00000020781)	HMCN1 (ENSSMAG00000020769)	ivns1abpa (ENSSMAG00000020763)	ENSSMAG00000020759	ENSSMAG00000020761	ENSSMAG00000020753	ENSSMAG00000020750	ENSSMAG00000020743	ENSSMAG00000020717
Tongue sole	MODERN SPECIES	11	nr2f6b (ENSCSEG00000016625)	ENSCSEG00000016641	csnk1g2b (ENSCSEG00000016660)	zgc:101100 (ENSCSEG00000016680)	rexo1 (ENSCSEG00000016683)	mknk2b (ENSCSEG00000016700)	mob3a (ENSCSEG00000016707)	ENSCSEG00000016719	zap70 (ENSCSEG00000016726)	adamts10 (ENSCSEG00000016770)	myo1f (ENSCSEG00000016814)	acer1 (ENSCSEG00000016881) #18	mllt1b (ENSCSEG00000016890) #20	acsbg2 (ENSCSEG00000016905) #21	acsbg2 (ENSCSEG00000016928) #21	rfx2 (ENSCSEG00000016950) #22	FCHO1 (ENSCSEG00000017008)	ENSCSEG00000017095	ENSCSEG00000017108	tprb (ENSCSEG00000017130)	pdcb (ENSCSEG00000017159)	ptgs2b (ENSCSEG00000017165)	PLA2G4A (ENSCSEG00000017191)	arpc5b (ENSCSEG00000017223)	HMCN1 (ENSCSEG00000017242)	ivns1abpa (ENSCSEG00000017339)	ENSCSEG00000017352	anos1b (ENSCSEG00000017368)	ENSCSEG00000017386	PDE4B (ENSCSEG00000017412)	SGIP1 (ENSCSEG00000017476)
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000154614	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
Fugu	MODERN SPECIES	12	babam1 (ENSTRUG00000004088)	ENSTRUG00000030865	nr2f6b (ENSTRUG00000004353)	ENSTRUG00000004523	csnk1g2b (ENSTRUG00000022105)	zgc:101100 (ENSTRUG00000028347)	rexo1 (ENSTRUG00000005201)	mknk2b (ENSTRUG00000005505)	mob3a (ENSTRUG00000027826)	zap70 (ENSTRUG00000006051)	adamts10 (ENSTRUG00000006697)	myo1f (ENSTRUG00000007576)	acer1 (ENSTRUG00000008139) #18	mllt1b (ENSTRUG00000008154) #20	acsbg2 (ENSTRUG00000008229) #21	rfx2 (ENSTRUG00000008788) #22	FCHO1 (ENSTRUG00000009109)	prg4b (ENSTRUG00000002244)	tprb (ENSTRUG00000002419)	pdcb (ENSTRUG00000004109)	ptgs2b (ENSTRUG00000004240)	PLA2G4A (ENSTRUG00000004829)	ARPC5 (ENSTRUG00000032458)	ENSTRUG00000006420	ivns1abpa (ENSTRUG00000006013)	anos1b (ENSTRUG00000006504)	ENSTRUG00000006795	PDE4B (ENSTRUG00000018562)	SGIP1 (ENSTRUG00000018561)	insl5a (ENSTRUG00000032631)	pars2 (ENSTRUG00000018560)
Tetraodon	MODERN SPECIES		fam163ab (ENSTNIG00000010171)	ENSTNIG00000010170	GPR52 (ENSTNIG00000000197)	csnk1g2b (ENSTNIG00000010169)	zgc:101100 (ENSTNIG00000010168)	rexo1 (ENSTNIG00000010167)	mknk2b (ENSTNIG00000010166)	mob3a (ENSTNIG00000010165)	zap70 (ENSTNIG00000010164)	adamts10 (ENSTNIG00000010163)	myo1f (ENSTNIG00000010162)	acer1 (ENSTNIG00000010161) #18	mllt1b (ENSTNIG00000002253) #20	ENSTNIG00000004323 #21	ENSTNIG00000005712 #20	rfx2 (ENSTNIG00000018128) #22	FCHO1 (ENSTNIG00000018127)	arpc5b (ENSTNIG00000018126)	PLA2G4A (ENSTNIG00000018125)	ptgs2b (ENSTNIG00000018124)	pdcb (ENSTNIG00000018123)	tprb (ENSTNIG00000018122)	prg4b (ENSTNIG00000018121)	ENSTNIG00000018120	ivns1abpa (ENSTNIG00000018119)	ENSTNIG00000018118	anos1b (ENSTNIG00000018117)	ENSTNIG00000018116	PDE4B (ENSTNIG00000018115)	SGIP1 (ENSTNIG00000018114)	insl5a (ENSTNIG00000000230)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Perciformes	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT01030000236834	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Lumpfish	MODERN SPECIES	19	gtpbp3 (ENSCLMG00005021603)	plvapb (ENSCLMG00005021599)	babam1 (ENSCLMG00005021598)	nr2f6b (ENSCLMG00005021597)	ENSCLMG00005021593	csnk1g2b (ENSCLMG00005021570)	zgc:101100 (ENSCLMG00005021566)	mknk2b (ENSCLMG00005021498)	mob3a (ENSCLMG00005021491)	zap70 (ENSCLMG00005021490)	adamts10 (ENSCLMG00005021484)	myo1f (ENSCLMG00005020157)	acer1 (ENSCLMG00005020128) #18	mllt1b (ENSCLMG00005020106) #20	acsbg2 (ENSCLMG00005019660) #21	rfx2 (ENSCLMG00005019633) #22	FCHO1 (ENSCLMG00005019606)	ENSCLMG00005019605	tprb (ENSCLMG00005018057)	pdcb (ENSCLMG00005018023)	ptgs2b (ENSCLMG00005017642)	PLA2G4A (ENSCLMG00005016400)	arpc5b (ENSCLMG00005016384)	ENSCLMG00005016382	ENSCLMG00005016379	ivns1abpa (ENSCLMG00005016228)	ENSCLMG00005016212	anos1b (ENSCLMG00005016185)	senp5 (ENSCLMG00005016182)	PDE4B (ENSCLMG00005015973)	SGIP1 (ENSCLMG00005015970)
Stickleback	MODERN SPECIES	8	ENSGACG00000007775	ENSGACG00000007771	nr2f6b (ENSGACG00000007766)	ENSGACG00000007760	csnk1g2b (ENSGACG00000007733)	zgc:101100 (ENSGACG00000007726)	rexo1 (ENSGACG00000007701)	mknk2b (ENSGACG00000007681)	mob3a (ENSGACG00000007678)	zap70 (ENSGACG00000007669)	adamts10 (ENSGACG00000007650)	myo1f (ENSGACG00000007641)	acer1 (ENSGACG00000007629) #18	mllt1b (ENSGACG00000007614) #20	acsbg2 (ENSGACG00000007559) #21	rfx2 (ENSGACG00000007541) #22	FCHO1 (ENSGACG00000007515)	ENSGACG00000007505	ENSGACG00000007504	ENSGACG00000007501	tprb (ENSGACG00000007456)	pdcb (ENSGACG00000007435)	ptgs2b (ENSGACG00000007384)	PLA2G4A (ENSGACG00000007373)	arpc5b (ENSGACG00000007368)	ENSGACG00000007306	ENSGACG00000007309	ivns1abpa (ENSGACG00000007288)	anos1b (ENSGACG00000007278)	senp5 (ENSGACG00000007271)	ENSGACG00000007270
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Channel bull blenny	MODERN SPECIES	18	nr2f6b (ENSCGOG00000008920)	ENSCGOG00000008912	MFSD12 (ENSCGOG00000008768)	csnk1g2b (ENSCGOG00000008441)	zgc:101100 (ENSCGOG00000008424)	rexo1 (ENSCGOG00000008413)	mknk2b (ENSCGOG00000007786)	mob3a (ENSCGOG00000007722)	zap70 (ENSCGOG00000007274)	adamts10 (ENSCGOG00000006985)	myo1f (ENSCGOG00000004581)	acer1 (ENSCGOG00000004452) #18	ENSCGOG00000004444 #20	mllt1b (ENSCGOG00000004407) #20	acsbg2 (ENSCGOG00000003443) #21	rfx2 (ENSCGOG00000003384) #22	ENSCGOG00000003365	ENSCGOG00000003359	tprb (ENSCGOG00000002154)	pdcb (ENSCGOG00000002058)	ptgs2b (ENSCGOG00000001550)	PLA2G4A (ENSCGOG00000001045)	ENSCGOG00000001012	PLA2G4A (ENSCGOG00000000724)	ARPC5 (ENSCGOG00000000592)	ENSCGOG00000000542	ivns1abpa (ENSCGOG00000000383)	ENSCGOG00000000343	anos1b (ENSCGOG00000000337)	ENSCGOG00000000331	ENSCGOG00000000325
Pike perch	MODERN SPECIES	286																rfx2 (ENSSLUG00000019474) #22	ENSSLUG00000019639	ENSSLUG00000019650	prg4b (ENSSLUG00000019673)	tprb (ENSSLUG00000019733)	pdcb (ENSSLUG00000020147)	ptgs2b (ENSSLUG00000020180)	PLA2G4A (ENSSLUG00000021173)	arpc5b (ENSSLUG00000021979)	ENSSLUG00000021987	ENSSLUG00000021997	ivns1abpa (ENSSLUG00000022023)	anos1b (ENSSLUG00000022094)	ENSSLUG00000022107
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865.j	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865.j	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000154396.b.b.a
European seabass	MODERN SPECIES	17	ENSDLAG00005015552	nr2f6b (ENSDLAG00005026367)	ENSDLAG00005015533	ENSDLAG00005015358	csnk1g2b (ENSDLAG00005014417)	zgc:101100 (ENSDLAG00005014377)	rexo1 (ENSDLAG00005014331)	mknk2b (ENSDLAG00005013012)	mob3a (ENSDLAG00005032124)	zap70 (ENSDLAG00005012726)	adamts10 (ENSDLAG00005012300)	myo1f (ENSDLAG00005008494)	acer1 (ENSDLAG00005030989) #18	MLLT1 (ENSDLAG00005008336) #20	acsbg2 (ENSDLAG00005006826) #21	rfx2 (ENSDLAG00005006480) #22	ENSDLAG00005025925	prg4b (ENSDLAG00005025912)	tprb (ENSDLAG00005025812)	pdcb (ENSDLAG00005025788)	ptgs2b (ENSDLAG00005025759)	PLA2G4A (ENSDLAG00005025706)	arpc5b (ENSDLAG00005033907)	HMCN1 (ENSDLAG00005028325)	ivns1abpa (ENSDLAG00005025680)	ENSDLAG00005025676	ENSDLAG00005025675	ENSDLAG00005025673	PDE4B (ENSDLAG00005025655)	ENSDLAG00005025650	ENSDLAG00005025643
Large yellow croaker	MODERN SPECIES	489	ENSLCRG00005015692	nr2f6b (ENSLCRG00005015693)	ENSLCRG00005015694	MFSD12 (ENSLCRG00005015698)	csnk1g2b (ENSLCRG00005015707)	zgc:101100 (ENSLCRG00005015940)	rexo1 (ENSLCRG00005015942)	mknk2b (ENSLCRG00005015951)	mob3a (ENSLCRG00005016108)	zap70 (ENSLCRG00005016109)	adamts10 (ENSLCRG00005016121)	myo1f (ENSLCRG00005016190)	acer1 (ENSLCRG00005019453) #18	mllt1b (ENSLCRG00005019454) #20	acsbg2 (ENSLCRG00005019457) #21	rfx2 (ENSLCRG00005019466) #22	ENSLCRG00005019531	prg4b (ENSLCRG00005019540)	tprb (ENSLCRG00005019552)	pdcb (ENSLCRG00005019636)	ptgs2b (ENSLCRG00005019646)	pla2g4ab (ENSLCRG00005020242)	ENSLCRG00005020756	arpc5b (ENSLCRG00005020758)	ivns1abpa (ENSLCRG00005000863)	ENSLCRG00005000892	anos1b (ENSLCRG00005000904)	ENSLCRG00005000911	PDE4B (ENSLCRG00005000943)	SGIP1 (ENSLCRG00005001965)	insl5a (ENSLCRG00005002006)
Gilthead seabream	MODERN SPECIES	2	nr2f6b (ENSSAUG00010022608)	ENSSAUG00010022603	MFSD12 (ENSSAUG00010022566)	csnk1g2b (ENSSAUG00010022274)	zgc:101100 (ENSSAUG00010022271)	rexo1 (ENSSAUG00010022269)	mknk2b (ENSSAUG00010021405)	mob3a (ENSSAUG00010021381)	zap70 (ENSSAUG00010021380)	adamts10 (ENSSAUG00010021363)	myo1f (ENSSAUG00010017795)	acer1 (ENSSAUG00010017745) #18	ENSSAUG00010017744 #20	mllt1b (ENSSAUG00010017742) #20	acsbg2 (ENSSAUG00010016271) #21	rfx2 (ENSSAUG00010016250) #22	ENSSAUG00010016090	prg4b (ENSSAUG00010016066)	tprb (ENSSAUG00010014516)	pdcb (ENSSAUG00010014430)	ptgs2b (ENSSAUG00010014303)	PLA2G4A (ENSSAUG00010014156)	arpc5b (ENSSAUG00010014121)	HMCN1 (ENSSAUG00010013809)	ivns1abpa (ENSSAUG00010013758)	ENSSAUG00010013754	anos1b (ENSSAUG00010013743)	ENSSAUG00010013740	PDE4B (ENSSAUG00010013697)	SGIP1 (ENSSAUG00010012331)	insl5a (ENSSAUG00010012304)
Ballan wrasse	MODERN SPECIES	13	babam1 (ENSLBEG00000027062)	ENSLBEG00000027045	nr2f6b (ENSLBEG00000027027)	ENSLBEG00000027011	MFSD12 (ENSLBEG00000026982)	csnk1g2b (ENSLBEG00000026928)	zgc:101100 (ENSLBEG00000026906)	rexo1 (ENSLBEG00000026888)	mknk2b (ENSLBEG00000026872)	mob3a (ENSLBEG00000026856)	zap70 (ENSLBEG00000026844)	adamts10 (ENSLBEG00000026815)	myo1f (ENSLBEG00000026776)	mllt1b (ENSLBEG00000026732) #20	acsbg2 (ENSLBEG00000026691) #21	rfx2 (ENSLBEG00000026595) #22	ENSLBEG00000026450	ENSLBEG00000026392	tprb (ENSLBEG00000026334)	pdcb (ENSLBEG00000026303)	ptgs2b (ENSLBEG00000026283)	PLA2G4A (ENSLBEG00000026233)	arpc5b (ENSLBEG00000026190)	ENSLBEG00000026051	ENSLBEG00000025980	ENSLBEG00000025955	ENSLBEG00000025872	naprt (ENSLBEG00000025810)	si:ch1073-287p18.1 (ENSLBEG00000025791)	si:ch211-191a24.4 (ENSLBEG00000025783)	ENSLBEG00000025765
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Pomacentridae	ANCESTRAL SPECIES	16	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981
Pomacentridae_A	ANCESTRAL SPECIES		ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981
Amphiprion	ANCESTRAL SPECIES	2	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a.d	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00390000010922
Clown anemonefish	MODERN SPECIES	2542															acsbg2 (ENSAOCG00000018676) #21	rfx2 (ENSAOCG00000018851) #22	FCHO1 (ENSAOCG00000018946)	prg4b (ENSAOCG00000019016)	tprb (ENSAOCG00000019192)	pdcb (ENSAOCG00000019264)	ENSAOCG00000019286
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000007543	nr2f6b (ENSAPEG00000007564)	ENSAPEG00000007589	MFSD12 (ENSAPEG00000007604)	csnk1g2b (ENSAPEG00000007658)	zgc:101100 (ENSAPEG00000007705)	rexo1 (ENSAPEG00000007726)	mknk2b (ENSAPEG00000007745)	mob3a (ENSAPEG00000007800)	zap70 (ENSAPEG00000007827)	adamts10 (ENSAPEG00000007894)	myo1f (ENSAPEG00000007993)	acer1 (ENSAPEG00000008099) #18	mllt1b (ENSAPEG00000008132) #20	acsbg2 (ENSAPEG00000008182) #21	rfx2 (ENSAPEG00000008251) #22	FCHO1 (ENSAPEG00000008365)	prg4b (ENSAPEG00000008449)	tprb (ENSAPEG00000008500)	pdcb (ENSAPEG00000008842)	ptgs2b (ENSAPEG00000008879)	PLA2G4A (ENSAPEG00000008928)	arpc5b (ENSAPEG00000009009)	ENSAPEG00000009040	ENSAPEG00000009271	ENSAPEG00000009302	ENSAPEG00000009327	ENSAPEG00000009340	ENSAPEG00000009363	ENSAPEG00000009439	ivns1abpa (ENSAPEG00000009551)
Spiny chromis	MODERN SPECIES	1023																rfx2 (ENSAPOG00000018195) #22	ENSAPOG00000018087	prg4b (ENSAPOG00000018063)	tprb (ENSAPOG00000018046)	pdcb (ENSAPOG00000017847)	ptgs2b (ENSAPOG00000017821)	PLA2G4A (ENSAPOG00000017765)	arpc5b (ENSAPOG00000017680)	arpc5b (ENSAPOG00000017663)	ENSAPOG00000017655	ENSAPOG00000017609	ENSAPOG00000017577	ENSAPOG00000017440	ENSAPOG00000017410
Bicolor damselfish	MODERN SPECIES	1283															acsbg2 (ENSSPAG00000015911) #21	rfx2 (ENSSPAG00000015709) #22	FCHO1 (ENSSPAG00000015668)	prg4b (ENSSPAG00000015652)	tprb (ENSSPAG00000015568)	pdcb (ENSSPAG00000015540)	ptgs2b (ENSSPAG00000015504)	PLA2G4A (ENSSPAG00000015452)	arpc5b (ENSSPAG00000015442)
Cichlidae	ANCESTRAL SPECIES	45	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	21	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000159865	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1099	babam1 (ENSMZEG00005018842)	ENSMZEG00005018847	nr2f6b (ENSMZEG00005018857)	ENSMZEG00005018869	csnk1g2b (ENSMZEG00005018885)	zgc:101100 (ENSMZEG00005018901)	rexo1 (ENSMZEG00005018904)	mknk2b (ENSMZEG00005018927)	mob3a (ENSMZEG00005018933)	zap70 (ENSMZEG00005018944)	adamts10 (ENSMZEG00005018969)	myo1f (ENSMZEG00005018998)	acer1 (ENSMZEG00005019030) #18	mllt1b (ENSMZEG00005019042) #20	acsbg2 (ENSMZEG00005019050) #21	rfx2 (ENSMZEG00005019062) #22	FCHO1 (ENSMZEG00005019101)	tmem178bb (ENSMZEG00005019117)	ENSMZEG00005019123	mkrn1 (ENSMZEG00005019125)	TMEM121B (ENSMZEG00005019131)	ENSMZEG00005019133	arhgef39 (ENSMZEG00005019139)	lmo3 (ENSMZEG00005019145)	dera (ENSMZEG00005019151)	msrb3 (ENSMZEG00005019159)	lemd3 (ENSMZEG00005019170)	tmbim4 (ENSMZEG00005019174)	ENSMZEG00005019180	b2m (ENSMZEG00005019181)	hspa14 (ENSMZEG00005019189)
Zebra mbuna	MODERN SPECIES	1099	babam1 (ENSMZEG00005018842)	plvapb (ENSMZEG00005018830)	gtpbp3 (ENSMZEG00005018819)	ANO8 (ENSMZEG00005018795)	dda1 (ENSMZEG00005018782)	ABHD8 (ENSMZEG00005018778)	ENSMZEG00005018770	nek7 (ENSMZEG00005018755)	lhx9 (ENSMZEG00005018750)	si:dkey-121a9.3 (ENSMZEG00005018743)	DENND1B (ENSMZEG00005018728)	crb1 (ENSMZEG00005018706)	axdnd1 (ENSMZEG00005018697)	nphs2 (ENSMZEG00005018686)	ENSMZEG00005018676	rfx2 (ENSMZEG00005018668) #22	FCHO1 (ENSMZEG00005018653)	prg4b (ENSMZEG00005018647)	tprb (ENSMZEG00005018610)	pdcb (ENSMZEG00005018588)	ENSMZEG00005018582	ptgs2b (ENSMZEG00005018575)	PLA2G4A (ENSMZEG00005018562)	arpc5b (ENSMZEG00005018556)	HMCN1 (ENSMZEG00005018519)	ivns1abpa (ENSMZEG00005018495)	ENSMZEG00005018489	anos1b (ENSMZEG00005018474)	ENSMZEG00005018468	PDE4B (ENSMZEG00005018432)	SGIP1 (ENSMZEG00005018409)
Eastern happy	MODERN SPECIES	8	babam1 (ENSACLG00000011992)	ENSACLG00000011920	nr2f6b (ENSACLG00000011885)	ENSACLG00000011854	csnk1g2b (ENSACLG00000011754)	zgc:101100 (ENSACLG00000011741)	rexo1 (ENSACLG00000011724)	mknk2b (ENSACLG00000011252)	mob3a (ENSACLG00000011244)	zap70 (ENSACLG00000011232)	adamts10 (ENSACLG00000011180)	myo1f (ENSACLG00000011109)	acer1 (ENSACLG00000011094) #18	mllt1b (ENSACLG00000011027) #20	acsbg2 (ENSACLG00000010950) #21	rfx2 (ENSACLG00000010807) #22	ENSACLG00000010711	prg4b (ENSACLG00000010173)	tprb (ENSACLG00000010024)	pdcb (ENSACLG00000009989)	ptgs2b (ENSACLG00000009977)	PLA2G4A (ENSACLG00000009930)	arpc5b (ENSACLG00000009921)	ENSACLG00000009912	ENSACLG00000009906	ENSACLG00000009899	ENSACLG00000009802	ENSACLG00000009795	ivns1abpa (ENSACLG00000009768)	ENSACLG00000009742	anos1b (ENSACLG00000009733)
P. nyererei	MODERN SPECIES	345	plvapb (ENSPNYG00000014001)	babam1 (ENSPNYG00000013981)	nr2f6b (ENSPNYG00000013961)	ENSPNYG00000013945	csnk1g2b (ENSPNYG00000013921)	zgc:101100 (ENSPNYG00000013900)	rexo1 (ENSPNYG00000013876)	mknk2b (ENSPNYG00000013854)	mob3a (ENSPNYG00000013834)	zap70 (ENSPNYG00000013811)	adamts10 (ENSPNYG00000013776)	myo1f (ENSPNYG00000013722)	acer1 (ENSPNYG00000013699) #18	mllt1b (ENSPNYG00000013657) #20	acsbg2 (ENSPNYG00000013626) #21	rfx2 (ENSPNYG00000013594) #22	ENSPNYG00000013560	prg4b (ENSPNYG00000013505)	tprb (ENSPNYG00000013396)	pdcb (ENSPNYG00000013331)	ptgs2b (ENSPNYG00000013302)	PLA2G4A (ENSPNYG00000013270)	arpc5b (ENSPNYG00000013248)	HMCN1 (ENSPNYG00000013056)	ivns1abpa (ENSPNYG00000012969)	ENSPNYG00000012934	anos1b (ENSPNYG00000012885)	ENSPNYG00000012860	PDE4B (ENSPNYG00000012821)	SGIP1 (ENSPNYG00000012738)	ENSPNYG00000012710
Burton s mouthbrooder	MODERN SPECIES	518	babam1 (ENSHBUG00000004758)	ENSHBUG00000004794	nr2f6b (ENSHBUG00000004816)	ENSHBUG00000004827	csnk1g2b (ENSHBUG00000004921)	zgc:101100 (ENSHBUG00000004950)	rexo1 (ENSHBUG00000004974)	mknk2b (ENSHBUG00000005042)	mob3a (ENSHBUG00000005063)	zap70 (ENSHBUG00000005129)	adamts10 (ENSHBUG00000005198)	myo1f (ENSHBUG00000005253)	acer1 (ENSHBUG00000005277) #18	mllt1b (ENSHBUG00000005304) #20	acsbg2 (ENSHBUG00000005339) #21	rfx2 (ENSHBUG00000005376) #22	FCHO1 (ENSHBUG00000005430)	prg4b (ENSHBUG00000005490)	tprb (ENSHBUG00000005601)	pdcb (ENSHBUG00000005616)	ptgs2b (ENSHBUG00000005649)	PLA2G4A (ENSHBUG00000005713)	arpc5b (ENSHBUG00000005737)	HMCN1 (ENSHBUG00000006059)	ivns1abpa (ENSHBUG00000006167)	ENSHBUG00000006188
Lyretail cichlid	MODERN SPECIES	356	babam1 (ENSNBRG00000021583)	nr2f6b (ENSNBRG00000021569)	ENSNBRG00000021545	csnk1g2b (ENSNBRG00000021517)	zgc:101100 (ENSNBRG00000021499)	rexo1 (ENSNBRG00000021386)	mknk2b (ENSNBRG00000021349)	mob3a (ENSNBRG00000021337)	ENSNBRG00000021323	adamts10 (ENSNBRG00000021277)	ENSNBRG00000021265	ENSNBRG00000021253	acer1 (ENSNBRG00000021234) #18	mllt1b (ENSNBRG00000021117) #20	acsbg2 (ENSNBRG00000021054) #21	rfx2 (ENSNBRG00000021013) #22	FCHO1 (ENSNBRG00000020963)	ENSNBRG00000020943	tprb (ENSNBRG00000020863)	pdcb (ENSNBRG00000020850)	ptgs2b (ENSNBRG00000020828)	PLA2G4A (ENSNBRG00000020789)	ARPC5 (ENSNBRG00000020769)	HMCN1 (ENSNBRG00000020568)	ivns1abpa (ENSNBRG00000020511)	ENSNBRG00000020498	ENSNBRG00000020484	anos1b (ENSNBRG00000020458)	ENSNBRG00000020408	SGIP1 (ENSNBRG00000020326)	pars2 (ENSNBRG00000020304)
Nile tilapia	MODERN SPECIES	8	ENSONIG00000042653	nr2f6b (ENSONIG00000036494)	ENSONIG00000010100	ENSONIG00000038271	csnk1g2b (ENSONIG00000010093)	zgc:101100 (ENSONIG00000033587)	rexo1 (ENSONIG00000010090)	mknk2b (ENSONIG00000010086)	mob3a (ENSONIG00000010084)	zap70 (ENSONIG00000010079)	adamts10 (ENSONIG00000010072)	myo1f (ENSONIG00000010058)	acer1 (ENSONIG00000010055) #18	mllt1b (ENSONIG00000010050) #20	acsbg2 (ENSONIG00000010044) #21	rfx2 (ENSONIG00000010042) #22	ENSONIG00000010035	prg4b (ENSONIG00000010033)	tprb (ENSONIG00000010025)	pdc (ENSONIG00000010023)	ptgs2b (ENSONIG00000010015)	PLA2G4A (ENSONIG00000010006)	arpc5b (ENSONIG00000030147)	ENSONIG00000009997	ENSONIG00000009994	ivns1abpa (ENSONIG00000009995)	anos1b (ENSONIG00000009992)	ENSONIG00000032942	ENSONIG00000042939	PDE4B (ENSONIG00000009986)	ENSONIG00000034880
Midas cichlid	MODERN SPECIES	254	babam1 (ENSACIG00000012392)	nr2f6b (ENSACIG00000012415)	ENSACIG00000012433	csnk1g2b (ENSACIG00000012453)	zgc:101100 (ENSACIG00000012484)	rexo1 (ENSACIG00000012498)	mknk2b (ENSACIG00000012576)	mob3a (ENSACIG00000012605)	zap70 (ENSACIG00000012622)	adamts10 (ENSACIG00000012758)	ENSACIG00000012814	myo1f (ENSACIG00000012826)	acer1 (ENSACIG00000012878) #18	ENSACIG00000012904 #20	acsbg2 (ENSACIG00000012921) #21	rfx2 (ENSACIG00000012986) #22	FCHO1 (ENSACIG00000013022)	ENSACIG00000013084	tprb (ENSACIG00000013110)	pdcb (ENSACIG00000013188)	ENSACIG00000013198	ptgs2b (ENSACIG00000013210)	PLA2G4A (ENSACIG00000013251)	arpc5b (ENSACIG00000013289)	ENSACIG00000013303	ENSACIG00000013332	ENSACIG00000013343	ENSACIG00000013355	ENSACIG00000013366	ENSACIG00000013373	ivns1abpa (ENSACIG00000013417)
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Mangrove rivulus	MODERN SPECIES	53	babam1 (ENSKMAG00000014461)	ENSKMAG00000014410	nr2f6b (ENSKMAG00000014385)	ENSKMAG00000014356	csnk1g2b (ENSKMAG00000014295)	zgc:101100 (ENSKMAG00000014275)	rexo1 (ENSKMAG00000014245)	mknk2b (ENSKMAG00000014182)	mob3a (ENSKMAG00000014145)	zap70 (ENSKMAG00000014044)	adamts10 (ENSKMAG00000013955)	myo1f (ENSKMAG00000013798)	acer1 (ENSKMAG00000013722) #18	ENSKMAG00000013714 #20	acsbg2 (ENSKMAG00000013639) #21	rfx2 (ENSKMAG00000013515) #22	FCHO1 (ENSKMAG00000013432)	ENSKMAG00000013414	ENSKMAG00000013392	tprb (ENSKMAG00000013125)	pdcb (ENSKMAG00000013034)	ptgs2b (ENSKMAG00000012996)	PLA2G4A (ENSKMAG00000012929)	arpc5b (ENSKMAG00000012902)	HMCN1 (ENSKMAG00000012666)	ivns1abpa (ENSKMAG00000012562)	ENSKMAG00000012533	anos1b (ENSKMAG00000012498)	ENSKMAG00000012462	PDE4B (ENSKMAG00000012376)	SGIP1 (ENSKMAG00000012270)
Turquoise killifish	MODERN SPECIES	1626	nr2f6b (ENSNFUG00015017280)	Nfu_g_1_002525 (ENSNFUG00015017275)	ENSNFUG00015017271	csnk1g2b (ENSNFUG00015017238)	zgc:101100 (ENSNFUG00015017225)	rexo1 (ENSNFUG00015017144)	MKNK2 (ENSNFUG00015016990)	MOB3A (ENSNFUG00015016965)	zap70 (ENSNFUG00015016885)	adamts10 (ENSNFUG00015016603)	myo1f (ENSNFUG00015016402)	acer1 (ENSNFUG00015016342) #18	ENSNFUG00015016333	mllt1b (ENSNFUG00015016328) #20	acsbg2 (ENSNFUG00015013614) #21	rfx2 (ENSNFUG00015010944) #22	FCHO1 (ENSNFUG00015010720)	prg4b (ENSNFUG00015010713)	tprb (ENSNFUG00015008196)	PDC (ENSNFUG00015008068)	ptgs2b (ENSNFUG00015007867)	PLA2G4A (ENSNFUG00015007513)	arpc5b (ENSNFUG00015007464)	ENSNFUG00015007393	ENSNFUG00015007384	ivns1abpa (ENSNFUG00015007376)	ENSNFUG00015007367	KAL1B (ENSNFUG00015007356)	senp5 (ENSNFUG00015007348)	PDE4B (ENSNFUG00015007078)	SGIP1 (ENSNFUG00015007046)
Cyprinodontoidei	ANCESTRAL SPECIES	29	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a
Poecilia	ANCESTRAL SPECIES	1	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a
NAME_6	ANCESTRAL SPECIES	59	ENSGT00390000006166.b	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT00940000158404	ENSGT00940000158870.v.a	ENSGT00940000158870.v.b	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT01040000242430	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614.od	ENSGT00940000163581.f.a.d.b	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00390000018600
Sailfin molly	MODERN SPECIES	1131															acsbg2 (ENSPLAG00000022758) #21	rfx2 (ENSPLAG00000022773) #22	ENSPLAG00000022800	FCHO1 (ENSPLAG00000022815)	ENSPLAG00000022838	ENSPLAG00000022864	tprb (ENSPLAG00000022880)
Amazon molly	MODERN SPECIES	290			csnk1g2b (ENSPFOG00000015590)	zgc:101100 (ENSPFOG00000015582)	rexo1 (ENSPFOG00000015539)	mknk2b (ENSPFOG00000015486)	zap70 (ENSPFOG00000015396)	ENSPFOG00000023927	mob3a (ENSPFOG00000015463)	adamts10 (ENSPFOG00000015150)	myo1f (ENSPFOG00000015087)	myo1f (ENSPFOG00000014729)	acer1 (ENSPFOG00000022414) #18	mllt1b (ENSPFOG00000014628) #20	acsbg2 (ENSPFOG00000014451) #21	rfx2 (ENSPFOG00000014343) #22	FCHO1 (ENSPFOG00000014151)	prg4b (ENSPFOG00000014119)	tprb (ENSPFOG00000013919)	pdcb (ENSPFOG00000013870)	ptgs2b (ENSPFOG00000013808)	arpc5b (ENSPFOG00000013539)	PLA2G4A (ENSPFOG00000013566)	arpc5b (ENSPFOG00000013523)	ENSPFOG00000011299	ENSPFOG00000011182	ivns1abpa (ENSPFOG00000011017)	ENSPFOG00000010988	anos1b (ENSPFOG00000010826)	ENSPFOG00000024496	ENSPFOG00000010814
Guppy	MODERN SPECIES	460	gspt1l (ENSPREG00000008023)	ENSPREG00000008085	pdxdc1 (ENSPREG00000008127)	ENSPREG00000008225	csnk1g2b (ENSPREG00000008247)	zgc:101100 (ENSPREG00000008297)	rexo1 (ENSPREG00000008314)	mknk2b (ENSPREG00000008356)	mob3a (ENSPREG00000008403)	zap70 (ENSPREG00000008419)	adamts10 (ENSPREG00000008473)	myo1f (ENSPREG00000008558)	acer1 (ENSPREG00000008689) #18	mllt1b (ENSPREG00000008720) #20	acsbg2 (ENSPREG00000008750) #21	rfx2 (ENSPREG00000008815) #22	FCHO1 (ENSPREG00000008859)	ENSPREG00000008901	tprb (ENSPREG00000008938)	pdcb (ENSPREG00000009031)	ptgs2b (ENSPREG00000009050)	PLA2G4A (ENSPREG00000009098)	arpc5b (ENSPREG00000009179)	HMCN1 (ENSPREG00000009231)	ENSPREG00000009457	ivns1abpa (ENSPREG00000009477)	anos1b (ENSPREG00000009555)	senp5 (ENSPREG00000009593)	PDE4B (ENSPREG00000009655)	SGIP1 (ENSPREG00000009713)	ENSPREG00000009783
Platyfish	MODERN SPECIES	23	babam1 (ENSXMAG00000002383)	ENSXMAG00000002380	nr2f6b (ENSXMAG00000029958)	ENSXMAG00000002711	csnk1g2b (ENSXMAG00000025893)	zgc:101100 (ENSXMAG00000002688)	rexo1 (ENSXMAG00000002681)	mknk2b (ENSXMAG00000026129)	mob3a (ENSXMAG00000002664)	zap70 (ENSXMAG00000002656)	adamts10 (ENSXMAG00000002633)	myo1f (ENSXMAG00000002577)	acer1 (ENSXMAG00000002576) #18	mllt1b (ENSXMAG00000002564) #20	acsbg2 (ENSXMAG00000002550) #21	rfx2 (ENSXMAG00000002530) #22	FCHO1 (ENSXMAG00000002509)	prg4b (ENSXMAG00000028103)	tprb (ENSXMAG00000002445)	pdcb (ENSXMAG00000002444)	ptgs2b (ENSXMAG00000002418)	PLA2G4A (ENSXMAG00000002397)	arpc5b (ENSXMAG00000002393)	HMCN1 (ENSXMAG00000002326)	ENSXMAG00000002325	ivns1abpa (ENSXMAG00000002313)	ENSXMAG00000023472	ENSXMAG00000002309	senp5 (ENSXMAG00000002306)	PDE4B (ENSXMAG00000023428)	SGIP1 (ENSXMAG00000026491)
NAME_4	ANCESTRAL SPECIES	134	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489.l	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981	ENSGT00390000010922
Mummichog	MODERN SPECIES	2467	ENSFHEG00000022073	ENSFHEG00000022062	nr2f6b (ENSFHEG00000022056)	ENSFHEG00000022048	csnk1g2b (ENSFHEG00000000541)	zgc:101100 (ENSFHEG00000022002)	rexo1 (ENSFHEG00000021991)	mknk2b (ENSFHEG00000021979)	mob3a (ENSFHEG00000000539)	zap70 (ENSFHEG00000021914)	adamts10 (ENSFHEG00000021906)	myo1f (ENSFHEG00000021819)	acer1 (ENSFHEG00000021681) #18	mllt1b (ENSFHEG00000021665) #20	acsbg2 (ENSFHEG00000021653) #21	rfx2 (ENSFHEG00000021635) #22	ENSFHEG00000021474	ENSFHEG00000021442	ENSFHEG00000021428	ENSFHEG00000021403	ENSFHEG00000021379
Sheepshead minnow	MODERN SPECIES	471								ENSCVAG00000017400	xbp1 (ENSCVAG00000017394)	ZNRF3 (ENSCVAG00000017386)	coq5 (ENSCVAG00000017359)	kremen1 (ENSCVAG00000017335)	mllt1b (ENSCVAG00000017327) #20	ENSCVAG00000017312	acsbg2 (ENSCVAG00000000442) #21	rfx2 (ENSCVAG00000017283) #22	FCHO1 (ENSCVAG00000017099)	ENSCVAG00000016851	tprb (ENSCVAG00000016813)	ENSCVAG00000016658	ENSCVAG00000000419	ENSCVAG00000016617	stx6 (ENSCVAG00000016575)	wdr18 (ENSCVAG00000016543)	GRIN3B (ENSCVAG00000016464)	TMEM259 (ENSCVAG00000016103)
Oryzias	ANCESTRAL SPECIES	5	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Japanese Medaka HdrR	MODERN SPECIES	18	babam1 (ENSORLG00000008898)	ENSORLG00000028295	nr2f6b (ENSORLG00000008911)	ENSORLG00000008937	csnk1g2b (ENSORLG00000008960)	zgc:101100 (ENSORLG00000008964)	rexo1 (ENSORLG00000008986)	mknk2b (ENSORLG00000009024)	mob3a (ENSORLG00000009055)	zap70 (ENSORLG00000009099)	adamts10 (ENSORLG00000009150)	myo1f (ENSORLG00000009185)	acer1 (ENSORLG00000009204) #18	mllt1b (ENSORLG00000009229) #20	acsbg2 (ENSORLG00000009239) #21	rfx2 (ENSORLG00000009257) #22	FCHO1 (ENSORLG00000009305)	prg4b (ENSORLG00000009323)	tprb (ENSORLG00000009423)	pdcb (ENSORLG00000009441)	ptgs2b (ENSORLG00000009468)	PLA2G4A (ENSORLG00000009481)	arpc5b (ENSORLG00000009498)	HMCN1 (ENSORLG00000009600)	ENSORLG00000024845	ivns1abpa (ENSORLG00000009672)	ENSORLG00000009682	anos1b (ENSORLG00000009706)	ENSORLG00000026071	PDE4B (ENSORLG00000009796)	ENSORLG00000024429
Chinese medaka	MODERN SPECIES	41	ENSOSIG00000013794	ENSOSIG00000013796	nr2f6b (ENSOSIG00000013800)	ENSOSIG00000013805	csnk1g2b (ENSOSIG00000013814)	zgc:101100 (ENSOSIG00000013906)	rexo1 (ENSOSIG00000013908)	mknk2b (ENSOSIG00000013940)	mob3a (ENSOSIG00000014331)	zap70 (ENSOSIG00000014334)	adamts10 (ENSOSIG00000014435)	myo1f (ENSOSIG00000014730)	acer1 (ENSOSIG00000014778) #18	mllt1b (ENSOSIG00000014781) #20	acsbg2 (ENSOSIG00000014793) #21	rfx2 (ENSOSIG00000015352) #22	FCHO1 (ENSOSIG00000017467)	ENSOSIG00000017491	tprb (ENSOSIG00000017524)	ptgs2b (ENSOSIG00000017867)	PLA2G4A (ENSOSIG00000019110)	arpc5b (ENSOSIG00000019230)	ivns1abpa (ENSOSIG00000019312)	ENSOSIG00000019340	anos1b (ENSOSIG00000019348)	ENSOSIG00000019352	PDE4B (ENSOSIG00000019372)	ENSOSIG00000019413	SGIP1 (ENSOSIG00000019416)	ENSOSIG00000019417	pars2 (ENSOSIG00000019420)
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00390000016934	ENSGT00530000063974.a	ENSGT00940000160748.a	ENSGT00940000165052	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00530000063751.a.a	ENSGT00730000111014.o.b	ENSGT00940000156236.a.a	ENSGT00390000010743.a.a	ENSGT01030000234606.b.e.b	ENSGT00940000154654.a.b	ENSGT00940000154614	ENSGT00940000155635	ENSGT00390000001254	ENSGT00440000033720.b	ENSGT00940000156309.A.l	ENSGT00940000155190.bb.a	ENSGT00940000156301.a.a	ENSGT00940000174981
Indian medaka	MODERN SPECIES	13	plvapb (ENSOMEG00000005004)	babam1 (ENSOMEG00000005036)	nr2f6b (ENSOMEG00000005056)	ENSOMEG00000005095	csnk1g2b (ENSOMEG00000005117)	zgc:101100 (ENSOMEG00000005147)	rexo1 (ENSOMEG00000005167)	mknk2b (ENSOMEG00000005219)	mob3a (ENSOMEG00000005232)	zap70 (ENSOMEG00000005300)	adamts10 (ENSOMEG00000005389)	myo1f (ENSOMEG00000005478)	acer1 (ENSOMEG00000005504) #18	mllt1b (ENSOMEG00000005537) #20	acsbg2 (ENSOMEG00000005657) #21	rfx2 (ENSOMEG00000005761) #22	FCHO1 (ENSOMEG00000005835)	ENSOMEG00000005844	ENSOMEG00000005855	tprb (ENSOMEG00000006153)	pdcb (ENSOMEG00000006198)	ptgs2b (ENSOMEG00000006228)	PLA2G4A (ENSOMEG00000006267)	arpc5b (ENSOMEG00000006288)	ENSOMEG00000006515	ivns1abpa (ENSOMEG00000006581)	ENSOMEG00000006607	ENSOMEG00000006637	senp5 (ENSOMEG00000006660)	PDE4B (ENSOMEG00000006755)	SGIP1 (ENSOMEG00000007046)
Javanese ricefish	MODERN SPECIES	18	ENSOJAG00000017496	nr2f6b (ENSOJAG00000017503)	ENSOJAG00000017536	csnk1g2b (ENSOJAG00000017546)	zgc:101100 (ENSOJAG00000017590)	rexo1 (ENSOJAG00000017610)	mknk2b (ENSOJAG00000017715)	mob3a (ENSOJAG00000017870)	zap70 (ENSOJAG00000017897)	adamts10 (ENSOJAG00000017965)	myo1f (ENSOJAG00000018638)	acer1 (ENSOJAG00000020266) #18	MLLT1 (ENSOJAG00000020298) #20	acsbg2 (ENSOJAG00000020310) #21	ENSOJAG00000020344 #21	rfx2 (ENSOJAG00000020373) #22	FCHO1 (ENSOJAG00000020576)	ENSOJAG00000020581	ENSOJAG00000020591	prg4b (ENSOJAG00000020596)	tprb (ENSOJAG00000020700)	pdcb (ENSOJAG00000021786)	ptgs2b (ENSOJAG00000000391)	PLA2G4A (ENSOJAG00000000872)	arpc5b (ENSOJAG00000001367)	ivns1abpa (ENSOJAG00000001586)	ENSOJAG00000001623	anos1b (ENSOJAG00000001651)	senp5 (ENSOJAG00000001668)	PDE4B (ENSOJAG00000001789)	SGIP1 (ENSOJAG00000001870)
Pinecone sodierfish	MODERN SPECIES	18	babam1 (ENSMMDG00005007804)	nr2f6b (ENSMMDG00005007803)	ENSMMDG00005007802	MFSD12 (ENSMMDG00005007796)	csnk1g2b (ENSMMDG00005007699)	zgc:101100 (ENSMMDG00005007686)	rexo1 (ENSMMDG00005007680)	mknk2b (ENSMMDG00005004720)	mob3a (ENSMMDG00005004597)	zap70 (ENSMMDG00005004532)	adamts10 (ENSMMDG00005004484)	myo1f (ENSMMDG00005004445)	acer1 (ENSMMDG00005004436) #18	mllt1b (ENSMMDG00005004422) #20	acsbg2 (ENSMMDG00005001835) #21	rfx2 (ENSMMDG00005001128) #22	FCHO1 (ENSMMDG00005000756)	prg4b (ENSMMDG00005000699)	tprb (ENSMMDG00005000569)	pdcb (ENSMMDG00005000506)	ptgs2b (ENSMMDG00005000495)	PLA2G4A (ENSMMDG00005000444)	arpc5b (ENSMMDG00005000422)	ivns1abpa (ENSMMDG00005000333)	ENSMMDG00005000317	TRMT1L (ENSMMDG00005000167)	niban1a (ENSMMDG00005015756)	kifap3a (ENSMMDG00005015465)	ntmt2 (ENSMMDG00005015445)	gorab (ENSMMDG00005015441)	prrx1b (ENSMMDG00005015436)
Cod	MODERN SPECIES	3	plvapb (ENSGMOG00000000024)	ENSGMOG00000029441	babam1 (ENSGMOG00000011178)	nr2f6b (ENSGMOG00000010346)	ENSGMOG00000011166	ENSGMOG00000011153	zgc:101100 (ENSGMOG00000011149)	rexo1 (ENSGMOG00000011119)	mknk2b (ENSGMOG00000011105)	mob3a (ENSGMOG00000011100)	zap70 (ENSGMOG00000011085)	myo1f (ENSGMOG00000011050)	acer1 (ENSGMOG00000011043) #18	MLLT1 (ENSGMOG00000011021) #20	acsbg2 (ENSGMOG00000011004) #21	rfx2 (ENSGMOG00000010985) #22	ENSGMOG00000010966	prg4b (ENSGMOG00000035920)	tprb (ENSGMOG00000010899)	pdcb (ENSGMOG00000034832)	ptgs2b (ENSGMOG00000010880)	PLA2G4A (ENSGMOG00000010862)	arpc5b (ENSGMOG00000010856)	HMCN1 (ENSGMOG00000010733)	ivns1abpa (ENSGMOG00000004931)	ENSGMOG00000036754	TRMT1L (ENSGMOG00000009535)	niban1a (ENSGMOG00000009550)	kifap3a (ENSGMOG00000009568)	ntmt2 (ENSGMOG00000031238)	MAST2 (ENSGMOG00000015409)
Otomorpha	ANCESTRAL SPECIES	30	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Otophysi	ANCESTRAL SPECIES	84	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391
Characiphysae	ANCESTRAL SPECIES	83	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e	ENSGT00940000165000	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030.fd	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a	ENSGT01030000234558.C.p	ENSGT00940000156012
Channel catfish	MODERN SPECIES	24	dohh (ENSIPUG00000013906)	fzr1 (ENSIPUG00000013919)	haus5 (ENSIPUG00000013964)	wdr13 (ENSIPUG00000014066)	si:ch211-255g12.6 (ENSIPUG00000014133)	asic1 (ENSIPUG00000014147)	gpd1a (ENSIPUG00000014222)	mknk2 (ENSIPUG00000014250)	mob3a (ENSIPUG00000014287)	Zap70 (ENSIPUG00000014308)	adamts10 (ENSIPUG00000014402)	MYO1F (ENSIPUG00000014471)	acer1 (ENSIPUG00000014707) #18	MLLT1 (ENSIPUG00000014750) #20	acsbg2 (ENSIPUG00000014771) #21	rfx2 (ENSIPUG00000014815) #22	FCHO1 (ENSIPUG00000014888)	znf692 (ENSIPUG00000014936)	ENSIPUG00000014978	trabd2b (ENSIPUG00000014990)	foxd2 (ENSIPUG00000015004)	foxe3 (ENSIPUG00000015013)	FAM78B (ENSIPUG00000015028)	slc35a3 (ENSIPUG00000015041)	notch2 (ENSIPUG00000015103)	sec22bb (ENSIPUG00000015162)	npl (ENSIPUG00000015208)	edem3 (ENSIPUG00000015278)	ENSIPUG00000015321	colgalt2b (ENSIPUG00000015337)	rgl1 (ENSIPUG00000015387)
Characiphysae_b	ANCESTRAL SPECIES	162	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404.k.a	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e
Characoidei	ANCESTRAL SPECIES	196	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b.n	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404.k.a	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00940000160259.e
Mexicana tetra	MODERN SPECIES	21	dohh (ENSAMXG00000016418)	ENSAMXG00000031324	ENSAMXG00000016427	MFSD12 (ENSAMXG00000016435)	csnk1g2b (ENSAMXG00000016454)	zgc:101100 (ENSAMXG00000032253)	rexo1 (ENSAMXG00000016463)	mknk2b (ENSAMXG00000032889)	mob3a (ENSAMXG00000029188)	zap70 (ENSAMXG00000016477)	adamts10 (ENSAMXG00000016485)	myo1f (ENSAMXG00000016522)	acer1 (ENSAMXG00000043608) #18	MLLT1 (ENSAMXG00000016533) #20	acsbg2 (ENSAMXG00000016541) #21	rfx2 (ENSAMXG00000042518) #22	ENSAMXG00000016569	ENSAMXG00000036131	ENSAMXG00000016590	trabd2b (ENSAMXG00000016593)	foxd2 (ENSAMXG00000016595)	FAM78B (ENSAMXG00000016600)	slc35a3a (ENSAMXG00000032366)	ENSAMXG00000036885	ENSAMXG00000035566	sec22bb (ENSAMXG00000016628)	npl (ENSAMXG00000043524)	EDEM3 (ENSAMXG00000041285)	zgc:92140 (ENSAMXG00000039623)	colgalt2b (ENSAMXG00000041867)	rgl1 (ENSAMXG00000016687)
Red-bellied piranha	MODERN SPECIES	467																rfx2 (ENSPNAG00000019313) #22	FCHO1 (ENSPNAG00000019264)	ENSPNAG00000019215	ENSPNAG00000019201	trabd2b (ENSPNAG00000019195)
Electric eel	MODERN SPECIES	389	PRDM11 (ENSEEEG00000011093)	ENSEEEG00000011091	ENSEEEG00000011089	BET1L (ENSEEEG00000011087)	arpp19b (ENSEEEG00000011084)	ENSEEEG00000010493	ENSEEEG00000010463	ENSEEEG00000010461	ENSEEEG00000010459	gnb5a (ENSEEEG00000010456)	AP4E1 (ENSEEEG00000010452)	CYP19A1 (ENSEEEG00000010006)	drd4a (ENSEEEG00000009971)	deaf1 (ENSEEEG00000009969)	pgghg (ENSEEEG00000009955)	rfx2 (ENSEEEG00000009950) #22
Cyprinoidei	ANCESTRAL SPECIES	7	ENSGT00940000165304	ENSGT00980000201079	ENSGT00950000182916.b	ENSGT00390000005318.a.a.a	ENSGT00940000156470.u.a	ENSGT00940000155505.b	ENSGT00940000165897	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800.eb #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000156393.a.a	ENSGT00940000160259	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000162270	ENSGT00390000018059.b.a	ENSGT00950000182827.C.b	ENSGT00940000155030.dd	ENSGT00940000156349.c	ENSGT00530000063604.B	ENSGT00940000159391	ENSGT00390000014594.e.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	137	ENSGT00940000165304.a	ENSGT00980000201079	ENSGT00950000182916.b.c	ENSGT00390000005318.a.a.a.b	ENSGT00940000156470.u.a.a	ENSGT00940000155505.b.c	ENSGT00940000165897.b	ENSGT00940000154587.a.b.q.b	ENSGT01050000244898.a.a.a.a.z.b	ENSGT00940000159185.e	ENSGT00940000158404.i	ENSGT00940000158870.db.b	ENSGT00730000110920.b.a.a.h #18	ENSGT00940000158800.eb.a.a.a #20	ENSGT00940000155332.A.n #21	ENSGT01050000244879.a.a.a.i #22	ENSGT00940000160489.e	ENSGT00940000161175	ENSGT00970000197265	ENSGT00940000160259.c	ENSGT00940000165000.q.a	ENSGT00940000161645.a.c.a	ENSGT00940000162270.m.a	ENSGT00390000018059.b.a.c	ENSGT00950000182827.C.b.d	ENSGT00940000155030.dd.a.a	ENSGT00940000155030.dd.b.b	ENSGT00940000155030.dd.b.a	ENSGT00940000156349.c.f	ENSGT00530000063604.B.a	ENSGT00940000159391.d
Goldfish	MODERN SPECIES	48	dohh (ENSCARG00000038662)	ENSCARG00000038687	ENSCARG00000038726	MFSD12 (ENSCARG00000038914)	csnk1g2b (ENSCARG00000039010)	zgc:101100 (ENSCARG00000039488)	rexo1 (ENSCARG00000039496)	mknk2b (ENSCARG00000039580)	mob3a (ENSCARG00000040129)	zap70 (ENSCARG00000040197)	adamts10 (ENSCARG00000040335)	myo1f (ENSCARG00000041146)	acer1 (ENSCARG00000041422) #18	MLLT1 (ENSCARG00000041494) #20	acsbg2 (ENSCARG00000041571) #21	rfx2 (ENSCARG00000042133) #22	FCHO1 (ENSCARG00000042379)	ENSCARG00000042638	ENSCARG00000042662	trabd2b (ENSCARG00000042683)	foxd2 (ENSCARG00000042729)	foxe3 (ENSCARG00000042740)	FAM78B (ENSCARG00000042743)	slc35a3a (ENSCARG00000042752)	ENSCARG00000042768	ENSCARG00000012464	ENSCARG00000012477	sec22bb (ENSCARG00000012496)	npl (ENSCARG00000012529)	EDEM3 (ENSCARG00000012613)	ENSCARG00000014634
Cyprininae_a	ANCESTRAL SPECIES	129	ENSGT00940000163250.C.j.a	ENSGT00940000165304.a	ENSGT00950000182916.b.c	ENSGT00390000005318.a.a.a.b	ENSGT00940000156470.u.a.a	ENSGT00940000155505.b.c	ENSGT00940000165897.b	ENSGT00940000154587.a.b.q.b	ENSGT01050000244898.a.a.a.a.z.b	ENSGT00940000159185.e	ENSGT00940000158404.i	ENSGT00940000158870.db.b	ENSGT00730000110920.b.a.a.h #18	ENSGT00940000158800.eb.a.a.a #20	ENSGT00940000155332.A.n #21	ENSGT01050000244879.a.a.a.i #22	ENSGT00940000160489.e	ENSGT00940000161175.b	ENSGT00970000197265	ENSGT00940000160259.c	ENSGT00940000165000.q.a	ENSGT00940000161645.a.c.a	ENSGT00940000162270.m.a	ENSGT00390000018059.b.a.c	ENSGT00950000182827.C.b.d	ENSGT00940000155030.dd.a.a	ENSGT00940000155030.dd.b.b	ENSGT00940000155030.dd.b.a	ENSGT00940000156349.c.e	ENSGT00530000063604.B.a	ENSGT00940000159391.d
Common carp reference	MODERN SPECIES	23	ENSCCRG00000065166	ENSCCRG00000074277	ENSCCRG00000056624	ENSCCRG00000049893	csnk1g2b (ENSCCRG00000059560)	zgc:101100 (ENSCCRG00000026418)	rexo1 (ENSCCRG00000026406)	mknk2b (ENSCCRG00000066179)	mob3a (ENSCCRG00000025857)	zap70 (ENSCCRG00000082076)	adamts10 (ENSCCRG00000037413)	myo1f (ENSCCRG00000011334)	acer1 (ENSCCRG00000029755) #18	MLLT1 (ENSCCRG00000063828) #20	acsbg2 (ENSCCRG00000081737) #21	rfx2 (ENSCCRG00000002402) #22	ENSCCRG00000002338	ENSCCRG00000064057	ENSCCRG00000002312	ENSCCRG00000002328	trabd2b (ENSCCRG00000028942)	foxd2 (ENSCCRG00000073443)	foxe3 (ENSCCRG00000028948)	ENSCCRG00000054518	ENSCCRG00000062466	ENSCCRG00000061162	sec22bb (ENSCCRG00000020063)	ENSCCRG00000075033	npl (ENSCCRG00000020124)	ENSCCRG00000020158	ENSCCRG00000061153
Golden-line barbel	MODERN SPECIES	74	ENSSGRG00000015780	MFSD12 (ENSSGRG00000015748)	csnk1g2b (ENSSGRG00000015207)	zgc:101100 (ENSSGRG00000015201)	rexo1 (ENSSGRG00000015198)	mknk2b (ENSSGRG00000015100)	mob3a (ENSSGRG00000015074)	zap70 (ENSSGRG00000015071)	zap70 (ENSSGRG00000015068)	adamts10 (ENSSGRG00000014989)	myo1f (ENSSGRG00000013533)	acer1 (ENSSGRG00000013517) #18	MLLT1 (ENSSGRG00000013515) #20	acsbg2 (ENSSGRG00000013514) #21	acsbg2 (ENSSGRG00000013513) #21	rfx2 (ENSSGRG00000013451) #22	FCHO1 (ENSSGRG00000013430)	ENSSGRG00000013426	ENSSGRG00000013424	trabd2b (ENSSGRG00000013422)	foxd2 (ENSSGRG00000013421)	foxe3 (ENSSGRG00000013420)	FAM78B (ENSSGRG00000013419)	slc35a3a (ENSSGRG00000013418)	ENSSGRG00000013176	ENSSGRG00000013173	ENSSGRG00000013171	sec22bb (ENSSGRG00000013139)	npl (ENSSGRG00000013120)	EDEM3 (ENSSGRG00000011616)	zgc:92140 (ENSSGRG00000011568)
Cyprininae	ANCESTRAL SPECIES	6	ENSGT00950000183104.B.a.b.a.a.c.b	ENSGT00940000165304.b	ENSGT00950000182916.b.d	ENSGT00390000005318.a.a.a.a	ENSGT00940000156470.u.a.b	ENSGT00940000155505.b.d	ENSGT00940000165897.a	ENSGT00940000154587.a.b.q.a	ENSGT01050000244898.a.a.a.a.z.a.a	ENSGT00940000159185.f	ENSGT00940000158404.j	ENSGT00940000158870.db.a	ENSGT00730000110920.b.a.a.g #18	ENSGT00940000158800.eb.b #20	ENSGT00940000155332.A.m #21	ENSGT01050000244879.a.a.a.j #22	ENSGT00940000160489.f	ENSGT00940000160259.d	ENSGT00940000165000.q.b	ENSGT00940000161645.a.c.b	ENSGT00940000157140.b.a.b.a	ENSGT00940000162270.m.b	ENSGT00390000018059.b.a.d	ENSGT00950000182827.C.b.c	ENSGT00940000155030.dd.a.b	ENSGT00940000156349.c.e	ENSGT00530000063604.B.b	ENSGT00940000159391.c	ENSGT00390000014594.e.a.a.a	ENSGT01030000234558.C.p.a	ENSGT00940000156012.c
Goldfish	MODERN SPECIES	61	ENSCARG00000033334	fzr1a (ENSCARG00000033193)	ENSCARG00000033018	MFSD12 (ENSCARG00000032782)	csnk1g2b (ENSCARG00000032289)	zgc:101100 (ENSCARG00000032253)	rexo1 (ENSCARG00000032248)	mknk2b (ENSCARG00000032109)	mob3a (ENSCARG00000032057)	zap70 (ENSCARG00000031986)	adamts10 (ENSCARG00000031667)	myo1f (ENSCARG00000027233)	ENSCARG00000027107	MLLT1 (ENSCARG00000027097) #20	acsbg2 (ENSCARG00000024769) #21	rfx2 (ENSCARG00000024449) #22	ENSCARG00000024369	ENSCARG00000024345	trabd2b (ENSCARG00000024335)	foxd2 (ENSCARG00000024324)	foxe3 (ENSCARG00000024321)	FAM78B (ENSCARG00000024310)	slc35a3a (ENSCARG00000024287)	ENSCARG00000023689	sec22bb (ENSCARG00000023624)	npl (ENSCARG00000023611)	EDEM3 (ENSCARG00000023474)	zgc:92140 (ENSCARG00000023452)	colgalt2b (ENSCARG00000023367)	rgl1 (ENSCARG00000022942)	plin3 (ENSCARG00000022919)
Cyprininae_a	ANCESTRAL SPECIES	39	ENSGT00940000163250.C.j.b	ENSGT00940000165304.b	ENSGT00950000182916.b.d	ENSGT00390000005318.a.a.a.a	ENSGT00940000156470.u.a.b	ENSGT00940000155505.b.d	ENSGT00940000165897.a	ENSGT00940000154587.a.b.q.a	ENSGT01050000244898.a.a.a.a.z.a.a	ENSGT00940000159185.f	ENSGT00940000158404.j	ENSGT00940000158870.db.a	ENSGT00730000110920.b.a.a.g #18	ENSGT00940000158800.eb.b #20	ENSGT00940000155332.A.m #21	ENSGT01050000244879.a.a.a.j #22	ENSGT00940000160489.f	ENSGT00940000161175.a	ENSGT00940000160259.d	ENSGT00940000165000.q.b	ENSGT00390000018059.b.a.d	ENSGT00950000182827.C.b.c	ENSGT00940000155030.dd.a.b	ENSGT00940000156349.c.f	ENSGT00530000063604.B.b	ENSGT00940000159391.c	ENSGT00390000014594.e.a.a.a	ENSGT01030000234558.C.p.a	ENSGT00940000156012.c	ENSGT00950000182920.b.a.a.j	ENSGT00940000166091.w.b
Common carp reference	MODERN SPECIES	17	haus5 (ENSCCRG00000062060)	fzr1a (ENSCCRG00000010959)	ENSCCRG00000025413	ENSCCRG00000015807	csnk1g2b (ENSCCRG00000003659)	zgc:101100 (ENSCCRG00000047566)	rexo1 (ENSCCRG00000047618)	mknk2b (ENSCCRG00000066026)	mob3a (ENSCCRG00000055183)	zap70 (ENSCCRG00000025854)	adamts10 (ENSCCRG00000066195)	myo1f (ENSCCRG00000029829)	acer1 (ENSCCRG00000056247) #18	MLLT1 (ENSCCRG00000065280) #20	acsbg2 (ENSCCRG00000055989) #21	rfx2 (ENSCCRG00000002356) #22	ENSCCRG00000002390	ENSCCRG00000031943	trabd2b (ENSCCRG00000028922)	ENSCCRG00000031950	ENSCCRG00000028946	foxe3 (ENSCCRG00000037764)	ENSCCRG00000021021	ENSCCRG00000016188	slc35a3a (ENSCCRG00000028952)	ENSCCRG00000003809	sec22bb (ENSCCRG00000057600)	npl (ENSCCRG00000080349)	ENSCCRG00000002110	zgc:92140 (ENSCCRG00000007147)	colgalt2b (ENSCCRG00000007209)
Golden-line barbel	MODERN SPECIES	15	ENSSGRG00000017691	fzr1a (ENSSGRG00000017674)	ENSSGRG00000017672	dohh (ENSSGRG00000017670)	ENSSGRG00000017668	csnk1g2b (ENSSGRG00000017559)	rexo1 (ENSSGRG00000017555)	mknk2b (ENSSGRG00000017554)	mob3a (ENSSGRG00000017553)	zap70 (ENSSGRG00000017333)	adamts10 (ENSSGRG00000017321)	myo1f (ENSSGRG00000015438)	acer1 (ENSSGRG00000015408) #18	MLLT1 (ENSSGRG00000015407) #20	acsbg2 (ENSSGRG00000015365) #21	rfx2 (ENSSGRG00000015363) #22	ENSSGRG00000015361	ENSSGRG00000015360	ENSSGRG00000015359	trabd2b (ENSSGRG00000015358)	FAM78B (ENSSGRG00000015357)	slc35a3a (ENSSGRG00000015338)	ENSSGRG00000015307	sec22bb (ENSSGRG00000015297)	npl (ENSSGRG00000015277)	EDEM3 (ENSSGRG00000014908)	ENSSGRG00000014903	colgalt2b (ENSSGRG00000014781)	rgl1 (ENSSGRG00000014775)	plin3 (ENSSGRG00000014774)	zgc:77486 (ENSSGRG00000014773)
Zebrafish	MODERN SPECIES	23	dohh (ENSDARG00000003564)	smim24 (ENSDARG00000095633)	ENSDARG00000092533	ENSDARG00000043210	csnk1g2b (ENSDARG00000034056)	zgc:101100 (ENSDARG00000021959)	rexo1 (ENSDARG00000026986)	mknk2b (ENSDARG00000015164)	mob3a (ENSDARG00000019113)	zap70 (ENSDARG00000015752)	adamts10 (ENSDARG00000075188)	myo1f (ENSDARG00000078734)	acer1 (ENSDARG00000010347) #18	MLLT1 (ENSDARG00000043185) #20	acsbg2 (ENSDARG00000004094) #21	rfx2 (ENSDARG00000013575) #22	ENSDARG00000015356	znf692 (ENSDARG00000078434)	ENSDARG00000079315	trabd2b (ENSDARG00000088816)	foxd2 (ENSDARG00000058133)	foxe3 (ENSDARG00000062892)	fam78bb (ENSDARG00000113552)	slc35a3a (ENSDARG00000013222)	notch2 (ENSDARG00000043130)	ENSDARG00000104329	sec22bb (ENSDARG00000100435)	npl (ENSDARG00000009390)	EDEM3 (ENSDARG00000074129)	zgc:92140 (ENSDARG00000098592)	colgalt2b (ENSDARG00000014670)
Clupeiformes	ANCESTRAL SPECIES	189	ENSGT00940000159238	ENSGT00390000010652.D.a.a	ENSGT00940000166148	ENSGT00390000018845.f	ENSGT00390000014626	ENSGT00390000000259.k.b	ENSGT00940000159007	ENSGT00940000154587.a.b	ENSGT01050000244898.a.a.a.a	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00730000110920.b.a.a #18	ENSGT00940000158800 #20	ENSGT00940000155332.A #21	ENSGT01050000244879.a.a.a #22	ENSGT00940000160489	ENSGT00970000197265	ENSGT00390000018525.a.b.e.b	ENSGT00940000155530	ENSGT00940000159560	ENSGT00940000164519.c.b
Atlantic herring	MODERN SPECIES	1	klhl26 (ENSCHAG00000018395)	CRTC1 (ENSCHAG00000018389)	comp (ENSCHAG00000016402)	tmem38a (ENSCHAG00000016352)	smim7 (ENSCHAG00000016345)	MED26 (ENSCHAG00000016342)	slc35e1 (ENSCHAG00000016306)	mknk2b (ENSCHAG00000016071)	mob3a (ENSCHAG00000016013)	zap70 (ENSCHAG00000015955)	adamts10 (ENSCHAG00000015051)	myo1f (ENSCHAG00000010221)	acer1 (ENSCHAG00000010067) #18	mllt1b (ENSCHAG00000010040) #20	acsbg2 (ENSCHAG00000007294) #21	rfx2 (ENSCHAG00000006984) #22	FCHO1 (ENSCHAG00000006957)	ENSCHAG00000006946	ENSCHAG00000006552	sft2d2a (ENSCHAG00000006485)	tmem45a (ENSCHAG00000006462)	sin3b (ENSCHAG00000003941)	ENSCHAG00000003826	ENSCHAG00000003613	ENSCHAG00000003558	ENSCHAG00000003528	ENSCHAG00000003466	ENSCHAG00000003450	ZNHIT6 (ENSCHAG00000003417)	ccn1 (ENSCHAG00000003344)	DDAH1 (ENSCHAG00000003298)
Denticle herring	MODERN SPECIES	4	ENSDCDG00000029894	ENSDCDG00000029900	uqcrh (ENSDCDG00000029902)	ENSDCDG00000029914	dmbx1b (ENSDCDG00000029936)	mknk1 (ENSDCDG00000029971)	mob3c (ENSDCDG00000030715)	elovl1b (ENSDCDG00000030717)	ENSDCDG00000030720	btf3l4 (ENSDCDG00000030723)	org (ENSDCDG00000030724)	ENSDCDG00000030734	ENSDCDG00000031019	mllt1b (ENSDCDG00000031024) #20	acsbg2 (ENSDCDG00000031085) #21	rfx2 (ENSDCDG00000031793) #22	FCHO1 (ENSDCDG00000031842)	ENSDCDG00000031856	sft2d2a (ENSDCDG00000031859)	tmem45a (ENSDCDG00000031870)	sin3b (ENSDCDG00000031955)	ENSDCDG00000032781	acbd6 (ENSDCDG00000032938)	lhx4 (ENSDCDG00000003091)	qsox1 (ENSDCDG00000003118)	ENSDCDG00000003205	ubxn6 (ENSDCDG00000003236)	hdgfl2 (ENSDCDG00000003265)	ap3d1 (ENSDCDG00000003362)	C2CD4C (ENSDCDG00000003497)	gna15.4 (ENSDCDG00000003502)
Spotted gar	MODERN SPECIES	657	dohh (ENSLOCG00000001335)	ENSLOCG00000001315	ENSLOCG00000001284	mfsd12a (ENSLOCG00000001259)	csnk1g2b (ENSLOCG00000001228)	rexo1 (ENSLOCG00000001203)	mknk2a (ENSLOCG00000001172)	mob3a (ENSLOCG00000001154)	zap70 (ENSLOCG00000001129)	adamts10 (ENSLOCG00000001103)	myo1f (ENSLOCG00000001068)	ENSLOCG00000001045	acer1 (ENSLOCG00000001026) #18	mllt1b (ENSLOCG00000001004) #20	acsbg2 (ENSLOCG00000000968) #21	rfx2 (ENSLOCG00000000921) #22	FCHO1 (ENSLOCG00000000887)	MAP1S (ENSLOCG00000000850)	ENSLOCG00000000801	gadd45ba (ENSLOCG00000000752)	gng7 (ENSLOCG00000000727)	diras1b (ENSLOCG00000017626)	APC2 (ENSLOCG00000000661)	ENSLOCG00000000630	reep6 (ENSLOCG00000000590)	zgc:113223 (ENSLOCG00000000559)	ENSLOCG00000000516	ENSLOCG00000000478	sgta (ENSLOCG00000000394)	SLC39A3 (ENSLOCG00000000362)	slc1a8b (ENSLOCG00000000305)
Reedfish	MODERN SPECIES	3	ENSECRG00000012546	ENSECRG00000012561	ENSECRG00000012587	IFI30 (ENSECRG00000012607)	ENSECRG00000012627	MAST3 (ENSECRG00000012747)	ENSECRG00000012939	ENSECRG00000012966	ENSECRG00000012978	ENSECRG00000012992	slc1a8b (ENSECRG00000013018)	elavl1b (ENSECRG00000013049)	tspan37 (ENSECRG00000013133)	mllt1b (ENSECRG00000013154) #20	acsbg2 (ENSECRG00000013188) #21	rfx2 (ENSECRG00000013225) #22	ENSECRG00000013290	ENSECRG00000013330	MAP1S (ENSECRG00000013348)	ENSECRG00000013369	gadd45ba (ENSECRG00000013381)	gng7 (ENSECRG00000013395)	diras1b (ENSECRG00000013404)	SLC39A3 (ENSECRG00000013414)	sgta (ENSECRG00000013438)	thop1 (ENSECRG00000013480)	ENSECRG00000013515	ENSECRG00000013543	ENSECRG00000013559	ENSECRG00000013565	ENSECRG00000013601
Elephant shark	MODERN SPECIES	1892																rfx2 (ENSCMIG00000012357) #22	ENSCMIG00000012364	ENSCMIG00000012367	ndufa7 (ENSCMIG00000012375)	rps28 (ENSCMIG00000012382)	ENSCMIG00000012387
Gnathostomata	ANCESTRAL SPECIES	71												ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00940000157654	ENSGT00940000156639	ENSGT00390000005811
Euteleostomi	ANCESTRAL SPECIES	24												ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000155876	ENSGT00940000164995	ENSGT00640000091523	ENSGT00940000157140.a	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000157654
Actinopterygii	ANCESTRAL SPECIES	832															ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22
Neopterygii	ANCESTRAL SPECIES	254			ENSGT00940000153912.B	ENSGT00530000064550.A	ENSGT00940000155192	ENSGT00940000160064.b	ENSGT01030000235745	ENSGT00910000144252	ENSGT00940000160278	ENSGT01100000263502.B.a.b	ENSGT00940000155292	ENSGT00940000155919	ENSGT00950000182815.a.a.a.a.a	ENSGT00390000001063	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	736															ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22
Clupeocephala	ANCESTRAL SPECIES	342								ENSGT01100000263502.B.a.b.a	ENSGT01100000263502.B.a.a.d.b.c.b	ENSGT00940000154877.C	ENSGT00940000154877.A	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b
Otomorpha	ANCESTRAL SPECIES	94											ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00940000159623	ENSGT00530000063749.c.b	ENSGT01100000263564.b
Otophysi	ANCESTRAL SPECIES	20										ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.a	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00940000159623	ENSGT00530000063749.c.b	ENSGT01100000263564.b
Characiphysae	ANCESTRAL SPECIES	42	ENSGT00390000010427.c	ENSGT00390000016532	ENSGT00730000112225	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT00940000158504	ENSGT00940000155292.db.a	ENSGT00950000182993.A.b.f ##15	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00940000181291	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00980000203443	ENSGT00940000159623
Channel catfish	MODERN SPECIES	7	Ucp2 (ENSIPUG00000003920)	ENSIPUG00000003955	icln (ENSIPUG00000004013)	ranbp3l (ENSIPUG00000004048)	slc1a3 (ENSIPUG00000004062)	nipblb (ENSIPUG00000004101)	NUP155 (ENSIPUG00000004317)	ENSIPUG00000004588	WDR70 (ENSIPUG00000004634)	gdnf (ENSIPUG00000004668) ##15	opn4xa (ENSIPUG00000004678)	pdlim5b (ENSIPUG00000004731)	BMPR1B (ENSIPUG00000004770)	UNC5C (ENSIPUG00000004839)	glis3 (ENSIPUG00000004952)	rfx3 (ENSIPUG00000004967) ##22	SMAD4 (ENSIPUG00000005015)	BMP10 (ENSIPUG00000005105)	npffr1l3 (ENSIPUG00000005114)	ENSIPUG00000005136	ENSIPUG00000005174	ENSIPUG00000005182	FAM222A (ENSIPUG00000005199)	ENSIPUG00000005207	git2b (ENSIPUG00000005248)	ENSIPUG00000005414	srsf9 (ENSIPUG00000005511)	triap1 (ENSIPUG00000005532)	GAL3ST1 (ENSIPUG00000005551)	linc-epb41l4a (ENSIPUG00000005559)	EPB41L4A (ENSIPUG00000005583)
Characiphysae_b	ANCESTRAL SPECIES	9	ENSGT00390000010427.c	ENSGT00390000016532	ENSGT00730000112225	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT00940000158504	ENSGT00940000155292.db.a	ENSGT00950000182993.A.b.f ##15	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00940000181291	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00980000203443	ENSGT00940000159623
Characoidei	ANCESTRAL SPECIES	78	ENSGT00940000155464.a.a	ENSGT00390000010427.c	ENSGT00390000016532	ENSGT00730000112225	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT00940000158504	ENSGT00950000182993.A.b.f ##15	ENSGT01100000263502.B.a.b.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00940000181291	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00980000203443	ENSGT00940000159623
Mexicana tetra	MODERN SPECIES	12	ENSAMXG00000038184	ENSAMXG00000039562	slc1a3b (ENSAMXG00000000008)	nipblb (ENSAMXG00000006890)	nup155 (ENSAMXG00000006908)	ENSAMXG00000041226	ENSAMXG00000031985	WDR70 (ENSAMXG00000006938)	gdnfa (ENSAMXG00000042733) ##15	EGFLAM (ENSAMXG00000006956)	opn4xa (ENSAMXG00000006974)	pdlim5b (ENSAMXG00000034634)	bmpr1bb (ENSAMXG00000006998)	UNC5C (ENSAMXG00000007025)	glis3 (ENSAMXG00000019181)	rfx3 (ENSAMXG00000019201) ##22	smad4a (ENSAMXG00000019219)	BMP10 (ENSAMXG00000034592)	npffr1l3 (ENSAMXG00000036599)	ENSAMXG00000019223	ENSAMXG00000019228	ANKLE2 (ENSAMXG00000019231)	FAM222A (ENSAMXG00000042411)	ENSAMXG00000035811	git2b (ENSAMXG00000019239)	SGSM1 (ENSAMXG00000019256)	triap1 (ENSAMXG00000034513)	srsf9 (ENSAMXG00000032281)	GAL3ST1 (ENSAMXG00000019276)	ENSAMXG00000035119	epb41l4a (ENSAMXG00000019284)
Red-bellied piranha	MODERN SPECIES	174									gdnfa (ENSPNAG00000020453) ##15	EGFLAM (ENSPNAG00000020443)	opn4xa (ENSPNAG00000020406)	pdlim5b (ENSPNAG00000020177)	bmpr1bb (ENSPNAG00000020132)	UNC5C (ENSPNAG00000007062)	glis3 (ENSPNAG00000019950)	rfx3 (ENSPNAG00000019929) ##22	smad4a (ENSPNAG00000019854)	BMP10 (ENSPNAG00000019783)	npffr1l3 (ENSPNAG00000019776)	ARVCF (ENSPNAG00000006953)	ENSPNAG00000003606	ENSPNAG00000019678	FAM222A (ENSPNAG00000003598)	ENSPNAG00000019649	git2b (ENSPNAG00000019596)	SGSM1 (ENSPNAG00000019476)	triap1 (ENSPNAG00000019320)	srsf9 (ENSPNAG00000003588)	GAL3ST1 (ENSPNAG00000019295)	linc-epb41l4a (ENSPNAG00000019283)	epb41l4a (ENSPNAG00000004958)
Electric eel	MODERN SPECIES	69	ucp2 (ENSEEEG00000009392)	ucp3 (ENSEEEG00000009394)	ENSEEEG00000009395	ENSEEEG00000009398	ENSEEEG00000009566	slc1a3b (ENSEEEG00000009570)	nipblb (ENSEEEG00000009575)	nup155 (ENSEEEG00000009580)	ENSEEEG00000009623	WDR70 (ENSEEEG00000009637)	gdnfa (ENSEEEG00000009703) ##15	pdlim5b (ENSEEEG00000009704)	bmpr1bb (ENSEEEG00000009708)	UNC5C (ENSEEEG00000009738)	glis3 (ENSEEEG00000009748)	rfx3 (ENSEEEG00000009754) ##22	smad4a (ENSEEEG00000009764)	ENSEEEG00000009814	npffr1l3 (ENSEEEG00000009817)	ARVCF (ENSEEEG00000009980)	ENSEEEG00000009982	ENSEEEG00000009990	FAM222A (ENSEEEG00000009999)	ENSEEEG00000010000	git2b (ENSEEEG00000010081)	SGSM1 (ENSEEEG00000012226)	triap1 (ENSEEEG00000012234)	srsf9 (ENSEEEG00000012236)	GAL3ST1 (ENSEEEG00000012239)	epb41l4a (ENSEEEG00000012240)	apc (ENSEEEG00000012244)
Cyprinoidei	ANCESTRAL SPECIES	137						ENSGT00390000016532	ENSGT00730000112225	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c.a	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00530000063811.B.b	ENSGT00950000183181.B.b.l.a	ENSGT01030000234517.F	ENSGT00940000159359	ENSGT00940000156765.a.b	ENSGT00940000157189.c	ENSGT00390000008657	ENSGT00390000009554	ENSGT00940000163875.a.b.b	ENSGT00940000170277
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	341											ENSGT01100000263502.B.a.b.a.a	ENSGT00940000155292.db.b.d	ENSGT00940000155919.b.b.e	ENSGT00950000182815.a.a.a.a.a.c.a.b	ENSGT00940000156896.a	ENSGT01050000244879.a.a.b.a ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b.e	ENSGT00940000157027.n.b.f	ENSGT00940000158044.b	ENSGT00530000063811.B.b.a	ENSGT00950000183181.B.b.l.a.e	ENSGT01030000234517.F.a	ENSGT00940000159359.p	ENSGT00940000156765.a.b.f	ENSGT00940000157189.c	ENSGT00390000008657	ENSGT00390000009554.e	ENSGT00940000163875.a.b.b
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2275																rfx3 (ENSCARG00000047887) ##22	smad4a (ENSCARG00000047816)
Goldfish	MODERN SPECIES	599															glis3 (ENSCARG00000043075)	rfx3 (ENSCARG00000043039) ##22
Goldfish	MODERN SPECIES	28	apc (ENSCARG00000035930)	C3AR1 (ENSCARG00000036394)	ENSCARG00000036397	ENSCARG00000036420	ENSCARG00000036429	ENSCARG00000036438	tdgf1 (ENSCARG00000036444)	ENSCARG00000036543	ENSCARG00000040007	ENSCARG00000040249	ENSCARG00000040264	wu:fb59d01 (ENSCARG00000040302)	ENSCARG00000040324	ENSCARG00000040600	glis3 (ENSCARG00000040610)	rfx3 (ENSCARG00000040635) ##22	smad4a (ENSCARG00000040718)	ENSCARG00000040828	npffr1l3 (ENSCARG00000040833)	BMP10 (ENSCARG00000040845)	erg (ENSCARG00000040878)	KCNJ15 (ENSCARG00000040897)	KCNJ6 (ENSCARG00000040905)	ENSCARG00000040934	dyrk1aa (ENSCARG00000040952)	HLCS (ENSCARG00000041072)	tiprl (ENSCARG00000041090)	ENSCARG00000041116	ENSCARG00000041179	ENSCARG00000041198	emsy (ENSCARG00000041238)
Cyprininae_a	ANCESTRAL SPECIES	492											ENSGT01100000263502.B.a.b.a.a	ENSGT00940000155292.db.b.d	ENSGT00940000155919.b.b.e	ENSGT00950000182815.a.a.a.a.a.c.a.b	ENSGT00940000156896.a	ENSGT01050000244879.a.a.b.a ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b.e	ENSGT00940000157027.n.b.f	ENSGT00940000158044.b	ENSGT00530000063811.B.b.a	ENSGT00950000183181.B.b.l.a.e	ENSGT01030000234517.F.a
Common carp reference	MODERN SPECIES	32	ENSCCRG00000075976	apc (ENSCCRG00000061639)	epb41l4a (ENSCCRG00000016643)	triap1 (ENSCCRG00000031285)	srsf9 (ENSCCRG00000072908)	ENSCCRG00000030007	nup155 (ENSCCRG00000006871)	ENSCCRG00000009055 ##15	ENSCCRG00000067347	ENSCCRG00000009051	opn4xa (ENSCCRG00000009048)	pdlim5b (ENSCCRG00000059606)	bmpr1bb (ENSCCRG00000008248)	UNC5C (ENSCCRG00000076525)	glis3 (ENSCCRG00000024813)	rfx3 (ENSCCRG00000035878) ##22	smad4a (ENSCCRG00000013106)	ENSCCRG00000056292	npffr1l3 (ENSCCRG00000016302)	ENSCCRG00000035795	ENSCCRG00000058451	ENSCCRG00000075108	ENSCCRG00000064876	ENSCCRG00000080391	ENSCCRG00000072512	vaspa (ENSCCRG00000082689)	emsy (ENSCCRG00000009945)	ENSCCRG00000018264	ENSCCRG00000014187	mpzl1l (ENSCCRG00000014154)	ets2 (ENSCCRG00000048007)
Golden-line barbel	MODERN SPECIES	1491																rfx3 (ENSSGRG00000013352) ##22	smad4a (ENSSGRG00000013355)	BMP10 (ENSSGRG00000013423)	npffr1l3 (ENSSGRG00000013425)	ARVCF (ENSSGRG00000013429)	ENSSGRG00000013431	FAM222A (ENSSGRG00000013520)	ENSSGRG00000013521
Cyprininae	ANCESTRAL SPECIES	656			ENSGT00940000156839.f	ENSGT00940000163530.s.a	ENSGT00940000156871.p.a.b	ENSGT00390000016532	ENSGT00730000112225.g	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e.b ##15	ENSGT01100000263502.B.a.b.a.b	ENSGT00940000155292.db.b.c	ENSGT00940000155919.b.b.f	ENSGT00950000182815.a.a.a.a.a.c.a.a	ENSGT00940000156896.b	ENSGT01050000244879.a.a.b.b ##22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1	GAL3ST1 (ENSCARG00000007656)	srsf9 (ENSCARG00000007654)	triap1 (ENSCARG00000007646)	ENSCARG00000005810	ENSCARG00000005738	akt2l (ENSCARG00000005681)	ENSCARG00000005672	ENSCARG00000005668	ENSCARG00000005661	ENSCARG00000005659	FAM222A (ENSCARG00000005655)	ENSCARG00000005650	ARVCF (ENSCARG00000005640)	npffr1l3 (ENSCARG00000005630)	smad4a (ENSCARG00000005529)	rfx3 (ENSCARG00000005482) ##22	vps26c (ENSCARG00000005463)	dyrk1aa (ENSCARG00000005235)	ENSCARG00000005200	riox2 (ENSCARG00000005190)	ENSCARG00000005183	ENSCARG00000005179	or42b1 (ENSCARG00000005177)	ENSCARG00000005170	ENSCARG00000005164	ENSCARG00000005159	ENSCARG00000005156	ENSCARG00000005153	smyd4 (ENSCARG00000005146)	RTN4RL1 (ENSCARG00000005138)	ENSCARG00000005123
Goldfish	MODERN SPECIES	1	ENSCARG00000002188	vaspa (ENSCARG00000002203)	akt2l (ENSCARG00000002228)	emsy (ENSCARG00000002289)	ENSCARG00000002337	ENSCARG00000002343	ENSCARG00000002349	mpzl1l (ENSCARG00000002360)	psmg1 (ENSCARG00000002379)	ets2 (ENSCARG00000002399)	erg (ENSCARG00000002414)	KCNJ6 (ENSCARG00000002421)	pigp (ENSCARG00000002431)	npffr1l3 (ENSCARG00000002443)	smad4a (ENSCARG00000002461)	rfx3 (ENSCARG00000002594) ##22	GRAMD1B (ENSCARG00000002613)	git2b (ENSCARG00000002635)	ENSCARG00000002706	ENSCARG00000002724	ENSCARG00000002783	pdxp (ENSCARG00000002786)	mier3a (ENSCARG00000002801)	grk5 (ENSCARG00000002871)	ash2l (ENSCARG00000003024)	pnx (ENSCARG00000003377)	aebp1a (ENSCARG00000003390)	ENSCARG00000003429	ENSCARG00000003437	ERAP1 (ENSCARG00000003511)	oclna (ENSCARG00000005457)
Cyprininae_a	ANCESTRAL SPECIES	384	ENSGT00940000159623.i	ENSGT00940000156839.f	ENSGT00940000163530.s.a	ENSGT00940000156871.p.a.b	ENSGT00390000016532	ENSGT00730000112225.g	ENSGT00730000112225.h	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e.b ##15	ENSGT01100000263502.B.a.b.a.b	ENSGT00940000155292.db.b.c	ENSGT00940000155919.b.b.f	ENSGT00950000182815.a.a.a.a.a.c.a.a	ENSGT00940000156896.b	ENSGT01050000244879.a.a.b.b ##22
Common carp reference	MODERN SPECIES	24	ENSCCRG00000062549	nup155 (ENSCCRG00000052714)	ENSCCRG00000000412	ENSCCRG00000076193	ENSCCRG00000074117	ENSCCRG00000078953	gdnfa (ENSCCRG00000058888) ##15	opn4xa (ENSCCRG00000044217)	pdlim5b (ENSCCRG00000008930)	bmpr1bb (ENSCCRG00000035315)	UNC5C (ENSCCRG00000035330)	ENSCCRG00000055442	glis3 (ENSCCRG00000010962)	smad4a (ENSCCRG00000024119)	ENSCCRG00000024172	rfx3 (ENSCCRG00000021805) ##22	npffr1l3 (ENSCCRG00000078439)	ENSCCRG00000053115	ENSCCRG00000064426	ENSCCRG00000060351	ENSCCRG00000021475	si:ch1073-303d10.1 (ENSCCRG00000064626)	ENSCCRG00000005334	ENSCCRG00000005331	vaspa (ENSCCRG00000079511)	akt2l (ENSCCRG00000003577)	ENSCCRG00000063205	emsy (ENSCCRG00000014133)	ENSCCRG00000064256	mpzl1l (ENSCCRG00000061608)	psmg1 (ENSCCRG00000081878)
Golden-line barbel	MODERN SPECIES	692														ENSSGRG00000051782	ENSSGRG00000051784	rfx3 (ENSSGRG00000051785) ##22	smad4a (ENSSGRG00000001496)	ENSSGRG00000005490	npffr1l3 (ENSSGRG00000005514)	ARVCF (ENSSGRG00000005521)
Zebrafish	MODERN SPECIES	1	epb41l4a (ENSDARG00000040087)	GAL3ST1 (ENSDARG00000078245)	linc-epb41l4a (ENSDARG00000092467)	srsf9 (ENSDARG00000008097)	triap1 (ENSDARG00000014963)	SGSM1 (ENSDARG00000075376)	nup155 (ENSDARG00000001777)	ENSDARG00000078257	WDR70 (ENSDARG00000109022)	gdnfa (ENSDARG00000039959) ##15	opn4xa (ENSDARG00000079129)	pdlim5b (ENSDARG00000027600)	bmpr1bb (ENSDARG00000102742)	UNC5C (ENSDARG00000087341)	glis3 (ENSDARG00000069726)	rfx3 (ENSDARG00000014550) ##22	ENSDARG00000110346	smad4a (ENSDARG00000075226)	BMP10 (ENSDARG00000109233)	npffr1l3 (ENSDARG00000010712)	ENSDARG00000095223	ARVCF (ENSDARG00000074329)	ENSDARG00000042872	ENSDARG00000087910	FAM222A (ENSDARG00000087585)	si:ch1073-303d10.1 (ENSDARG00000103006)	ENSDARG00000074914	ENSDARG00000100197	vaspa (ENSDARG00000099690)	akt2l (ENSDARG00000103612)	NHLRC3 (ENSDARG00000102127)
Clupeiformes	ANCESTRAL SPECIES	12											ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00530000063811.B.b	ENSGT00940000155182.a	ENSGT00940000156383.b.d	ENSGT00940000156871.p	ENSGT00940000163530	ENSGT00940000156839	ENSGT00950000182923.C.b	ENSGT00940000159623	ENSGT00530000063749.c.b	ENSGT01100000263564.b
Atlantic herring	MODERN SPECIES	13	cldn23.1 (ENSCHAG00000026885)	ENSCHAG00000026891	ENSCHAG00000026934	uqcr10 (ENSCHAG00000027023)	ENSCHAG00000027025	CABP7 (ENSCHAG00000027027)	WDR70 (ENSCHAG00000027037)	ENSCHAG00000027088	gdnfa (ENSCHAG00000027090) ##15	EGFLAM (ENSCHAG00000027100)	opn4xa (ENSCHAG00000027134)	pdlim5b (ENSCHAG00000027143)	bmpr1bb (ENSCHAG00000027155)	UNC5C (ENSCHAG00000027171)	glis3 (ENSCHAG00000027318)	rfx3 (ENSCHAG00000027336) ##22	smad4a (ENSCHAG00000027364)	BMP10 (ENSCHAG00000027368)	npffr1l3 (ENSCHAG00000000815)	ENSCHAG00000001619	ENSCHAG00000001985	ENSCHAG00000002110	FAM222A (ENSCHAG00000002143)	ENSCHAG00000002157	git2b (ENSCHAG00000002217)	ENSCHAG00000003311	triap1 (ENSCHAG00000007987)	srsf9 (ENSCHAG00000008017)	GAL3ST1 (ENSCHAG00000008035)	epb41l4a (ENSCHAG00000008091)	apc (ENSCHAG00000008492)
Denticle herring	MODERN SPECIES	15	cldn23.1 (ENSDCDG00000018123)	ENSDCDG00000018113	ENSDCDG00000018096	ENSDCDG00000018093	ENSDCDG00000018050	uqcr10 (ENSDCDG00000017997)	zmat5 (ENSDCDG00000017990)	CABP7 (ENSDCDG00000017983)	WDR70 (ENSDCDG00000015371)	gdnfa (ENSDCDG00000015319) ##15	opn4xa (ENSDCDG00000015312)	pdlim5b (ENSDCDG00000015298)	ENSDCDG00000015109	UNC5C (ENSDCDG00000004623)	glis3 (ENSDCDG00000004456)	rfx3 (ENSDCDG00000004292) ##22	smad4a (ENSDCDG00000004267)	BMP10 (ENSDCDG00000004250)	npffr1l3 (ENSDCDG00000004180)	ARVCF (ENSDCDG00000004159)	ENSDCDG00000004152	FAM222A (ENSDCDG00000004148)	ENSDCDG00000004145	git2b (ENSDCDG00000004105)	SGSM1 (ENSDCDG00000002384)	triap1 (ENSDCDG00000002317)	srsf9 (ENSDCDG00000002314)	GAL3ST1 (ENSDCDG00000002312)	epb41l4a (ENSDCDG00000002302)	apc (ENSDCDG00000002261)	C3AR1 (ENSDCDG00000002253)
Euteleosteomorpha	ANCESTRAL SPECIES	89	ENSGT00940000156481.a.a.b	ENSGT00940000157656.b	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.b.b	ENSGT00950000182924.A.b.a.a	ENSGT00950000183054.b.c	ENSGT00950000183027.a.b.c.b	ENSGT00940000155571.B	ENSGT01100000263502.B.a.a.d.b.c.b	ENSGT00940000154877.C	ENSGT00940000154877.A	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00940000155464.a.a	ENSGT00940000161387	ENSGT00390000006320	ENSGT00390000007918
Protacanthopterygii	ANCESTRAL SPECIES	77										ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.b.b	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT01070000253744.b.a.a.a.a	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c	ENSGT00940000155464.a.a	ENSGT00940000161387	ENSGT00390000006320	ENSGT00390000007918	ENSGT00940000165259.a	ENSGT00970000193642	ENSGT00940000155402.a.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	407	ENSGT00940000156839.j.a.a.b	ENSGT00940000163530.k.b	ENSGT00940000156871.p.c	ENSGT00940000156383.b.a	ENSGT00940000155182.a.c	ENSGT00530000063811.B.b.c	ENSGT00390000016767.r.b	ENSGT00390000004796.d.b	ENSGT00390000015433.g.a.a	ENSGT00950000182993.A.b.e.d ##15	ENSGT01100000263502.B.a.b.a.d	ENSGT00940000155292.db.b.b.b	ENSGT00940000155919.b.b.b	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000156896.d	ENSGT01050000244879.a.a.b.c ##22	ENSGT00940000157435.a.b.k	ENSGT00940000156279.f.e	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000157027.n.b.b	ENSGT00940000158044.b.c	ENSGT00730000112225.e	ENSGT00390000016532.k	ENSGT00390000010427.c.q.b	ENSGT00940000155464.a.a.h	ENSGT00940000161387.b
Huchen	MODERN SPECIES	1080														ENSHHUG00000021217	glis3 (ENSHHUG00000021162)	rfx3 (ENSHHUG00000021086) ##22	smad4a (ENSHHUG00000020905)	BMP10 (ENSHHUG00000020900)	npffr1l3 (ENSHHUG00000020821)	ARVCF (ENSHHUG00000020789)	ENSHHUG00000020776	ENSHHUG00000020744	nup155 (ENSHHUG00000020176)	ENSHHUG00000020151	ENSHHUG00000020137	SLC1A3 (ENSHHUG00000020089)	RANBP3L (ENSHHUG00000020077)	ENSHHUG00000020054	skp2 (ENSHHUG00000019999)	ENSHHUG00000019842
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00940000156839.j.a.a.b	ENSGT00940000163530.k.b	ENSGT00940000156871.p.c	ENSGT00940000156383.b.a	ENSGT00940000155182.a.c	ENSGT00530000063811.B.b.c	ENSGT00390000016767.r.b	ENSGT00390000004796.d.b	ENSGT00390000015433.g.a.a	ENSGT00950000182993.A.b.e.d ##15	ENSGT01100000263502.B.a.b.a.d	ENSGT00940000155292.db.b.b.b	ENSGT00940000155919.b.b.b	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000156896.d	ENSGT01050000244879.a.a.b.c ##22	ENSGT00940000157435.a.b.k	ENSGT00940000156279.f.e	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000157027.n.b.b	ENSGT00940000158044.b.c	ENSGT00730000112225.e	ENSGT00390000016532.k	ENSGT00390000010427.c.q.b	ENSGT00940000155464.a.a.h	ENSGT00940000161387.b	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c
Salmo	ANCESTRAL SPECIES	13	ENSGT00940000156839.j.a.b	ENSGT00940000163530.k.b	ENSGT00940000156871.p.c	ENSGT00940000156383.b.a	ENSGT00940000155182.a.c	ENSGT00530000063811.B.b.c	ENSGT00390000016767.r.b	ENSGT00390000004796.d.b	ENSGT00390000015433.g.a.a	ENSGT00950000182993.A.b.e.d ##15	ENSGT01100000263502.B.a.b.a.d	ENSGT00940000155292.db.b.b.b	ENSGT00940000155919.b.b.b	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000156896.d	ENSGT01050000244879.a.a.b.c ##22	ENSGT00940000157435.a.b.k	ENSGT00940000156279.f.e	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000157027.n.b.b	ENSGT00940000158044.b.c	ENSGT00730000112225.e	ENSGT00390000016532.k	ENSGT00390000010427.c.q.b	ENSGT00940000155464.a.a.h	ENSGT00940000161387.b	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c
River trout	MODERN SPECIES	6	GAL3ST1 (ENSSTUG00000005322)	srsf9 (ENSSTUG00000005329)	triap1 (ENSSTUG00000005359)	ENSSTUG00000005472	git2b (ENSSTUG00000007930)	ENSSTUG00000011640	FAM222A (ENSSTUG00000011650)	ENSSTUG00000011655	PGAM5 (ENSSTUG00000011683)	gdnfa (ENSSTUG00000011702) ##15	opn4xa (ENSSTUG00000011711)	pdlim5b (ENSSTUG00000011721)	bmpr1bb (ENSSTUG00000011743)	UNC5C (ENSSTUG00000012118)	glis3 (ENSSTUG00000014854)	rfx3 (ENSSTUG00000014922) ##22	smad4a (ENSSTUG00000015304)	BMP10 (ENSSTUG00000015382)	npffr1l3 (ENSSTUG00000015389)	ENSSTUG00000015535	ARVCF (ENSSTUG00000015545)	ENSSTUG00000015553	ENSSTUG00000015561	ENSSTUG00000015565	ENSSTUG00000015590	nup155 (ENSSTUG00000015735)	SLC1A3 (ENSSTUG00000019871)	RANBP3L (ENSSTUG00000020202)	nadk2 (ENSSTUG00000020232)	skp2 (ENSSTUG00000020264)	ENSSTUG00000020351
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000083144	ENSSSAG00000119571	ENSSSAG00000006783	ENSSSAG00000010075	ENSSSAG00000054301	ENSSSAG00000087649	ENSSSAG00000054309	ENSSSAG00000054318	ENSSSAG00000093882	gdnfa (ENSSSAG00000098062) ##15	opn4xa (ENSSSAG00000054324)	pdlim5b (ENSSSAG00000054329)	bmpr1bb (ENSSSAG00000054353)	UNC5C (ENSSSAG00000055545)	glis3 (ENSSSAG00000057357)	rfx3 (ENSSSAG00000057457) ##22	smad4a (ENSSSAG00000062684)	ENSSSAG00000100713	npffr1l3 (ENSSSAG00000000750)	ENSSSAG00000063454	ENSSSAG00000100999	ENSSSAG00000095093	ENSSSAG00000107554	ENSSSAG00000063799	ENSSSAG00000068186	SLC1A3 (ENSSSAG00000068621)	RANBP3L (ENSSSAG00000068697)	NADK2 (ENSSSAG00000068701)	SKP2 (ENSSSAG00000068716)	ENSSSAG00000068795	myo5b (ENSSSAG00000069046)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00390000006265.b.c.e	ENSGT00940000160711.h.a	ENSGT00950000182923.C.b	ENSGT00940000156839.j.a.a.b	ENSGT00940000163530.k.b	ENSGT00940000156871.p.c	ENSGT00940000156383.b.a	ENSGT00940000155182.a.c	ENSGT00530000063811.B.b.c	ENSGT00950000182993.A.b.e.d ##15	ENSGT01100000263502.B.a.b.a.d	ENSGT00940000155292.db.b.b.b	ENSGT00940000155919.b.b.b	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000156896.d	ENSGT01050000244879.a.a.b.c ##22	ENSGT00940000157435.a.b.k	ENSGT00940000156279.f.e	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000157027.n.b.b	ENSGT00940000158044.b.c	ENSGT00730000112225.e	ENSGT00390000016532.k	ENSGT00390000010427.c.q.b	ENSGT00940000155464.a.a.h	ENSGT00940000161387.b	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000052206	ENSOMYG00000029158	gltp (ENSOMYG00000028810)	ENSOMYG00000028796	gdnfa (ENSOMYG00000028767) ##15	opn4xa (ENSOMYG00000028749)	pdlim5b (ENSOMYG00000028740)	bmpr1bb (ENSOMYG00000065864)	ENSOMYG00000070326	ENSOMYG00000050431	UNC5C (ENSOMYG00000028666)	glis3 (ENSOMYG00000028581)	ENSOMYG00000028573	ENSOMYG00000028571	ENSOMYG00000053960	rfx3 (ENSOMYG00000028433) ##22	smad4a (ENSOMYG00000028296)	ENSOMYG00000028251	npffr1l3 (ENSOMYG00000028242)	ENSOMYG00000070897	ENSOMYG00000028059	ENSOMYG00000027986	ENSOMYG00000027976	ENSOMYG00000049772	ENSOMYG00000027674	SLC1A3 (ENSOMYG00000061009)	RANBP3L (ENSOMYG00000027601)	SKP2 (ENSOMYG00000027423)	ENSOMYG00000026109	ENSOMYG00000073044	myo5b (ENSOMYG00000009470)
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00390000006265.b.c.e	ENSGT00940000160711.h.a	ENSGT00950000182923.C.b	ENSGT00940000156839.j.a.a.b	ENSGT00940000163530.k.b	ENSGT00940000156871.p.c	ENSGT00940000156383.b.a	ENSGT00940000155182.a.c	ENSGT00530000063811.B.b.c	ENSGT00950000182993.A.b.e.d ##15	ENSGT01100000263502.B.a.b.a.d	ENSGT00940000155292.db.b.b.b	ENSGT00940000155919.b.b.b	ENSGT00950000182815.a.a.a.a.a.c.d	ENSGT00940000156896.d	ENSGT01050000244879.a.a.b.c ##22	ENSGT00940000157435.a.b.k	ENSGT00940000156279.f.e	ENSGT01070000253744.b.a.a.a.a.h	ENSGT00940000157027.n.b.b	ENSGT00940000158044.b.c	ENSGT00730000112225.e	ENSGT00390000016532.k	ENSGT00390000010427.c.q.b	ENSGT00940000155464.a.a.h	ENSGT00940000161387.b	ENSGT00390000006320.r	ENSGT00390000007918.d	ENSGT00390000002096.s.b	ENSGT00940000155402.a.b.h	ENSGT01030000234908.c
Coho salmon	MODERN SPECIES	26	ENSOKIG00005001156	ENSOKIG00005001152	GAL3ST1 (ENSOKIG00005001146)	srsf9 (ENSOKIG00005001135)	ENSOKIG00005001127	ENSOKIG00005001029	ENSOKIG00005000729	ENSOKIG00005000617	FAM222A (ENSOKIG00005000613)	gdnfa (ENSOKIG00005000606) ##15	opn4xa (ENSOKIG00005000598)	pdlim5b (ENSOKIG00005000574)	bmpr1bb (ENSOKIG00005000475)	UNC5C (ENSOKIG00005000358)	glis3 (ENSOKIG00005000292)	rfx3 (ENSOKIG00005000211) ##22	smad4a (ENSOKIG00005023370)	BMP10 (ENSOKIG00005023344)	npffr1l3 (ENSOKIG00005022916)	ARVCF (ENSOKIG00005022603)	ENSOKIG00005022380	ENSOKIG00005022343	ENSOKIG00005021324	SLC1A3 (ENSOKIG00005021263)	RANBP3L (ENSOKIG00005021233)	nadk2 (ENSOKIG00005021162)	skp2 (ENSOKIG00005021126)	ENSOKIG00005020959	ENSOKIG00005020916	myo5b (ENSOKIG00005020119)	ENSOKIG00005019996
Chinook salmon	MODERN SPECIES	33	RTN4R (ENSOTSG00005038385)	ENSOTSG00005038382	GAL3ST1 (ENSOTSG00005038381)	srsf9 (ENSOTSG00005038378)	triap1 (ENSOTSG00005038376)	ENSOTSG00005034424	git2b (ENSOTSG00005026144)	ENSOTSG00005026116	FAM222A (ENSOTSG00005026115)	ENSOTSG00005026113	gdnfa (ENSOTSG00005026112) ##15	opn4xa (ENSOTSG00005026111)	ENSOTSG00005026110	ENSOTSG00005026107	glis3 (ENSOTSG00005026106)	rfx3 (ENSOTSG00005025481) ##22	smad4a (ENSOTSG00005025465)	BMP10 (ENSOTSG00005025463)	npffr1l3 (ENSOTSG00005025462)	ARVCF (ENSOTSG00005025448)	ENSOTSG00005025444	ENSOTSG00005025441	nup155 (ENSOTSG00005025431)	ENSOTSG00005025366	SLC1A3 (ENSOTSG00005025217)	RANBP3L (ENSOTSG00005025207)	skp2 (ENSOTSG00005025201)	ENSOTSG00005024755	myo5b (ENSOTSG00005003595)	ENSOTSG00005003363	capslb (ENSOTSG00005003361)
Salmoninae	ANCESTRAL SPECIES	479											ENSGT01100000263502.B.a.b.a.c	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b.a	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000156896.c	ENSGT01050000244879.a.a.b.d ##22	ENSGT00940000157435.a.b.l	ENSGT00940000156279.f.f	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000157027.n.b.a	ENSGT00940000158044.b.d	ENSGT00730000112225.f	ENSGT00390000016532.j	ENSGT00390000010427.c.q.a	ENSGT00940000155464.a.a.g	ENSGT00940000161387.a	ENSGT00390000006320.q	ENSGT00390000007918.c	ENSGT00390000002096.s.a	ENSGT00390000006320.r	ENSGT00390000007918.d
Salmoninae_a	ANCESTRAL SPECIES	87											ENSGT01100000263502.B.a.b.a.c	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b.a	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000156896.c	ENSGT01050000244879.a.a.b.d ##22	ENSGT00940000157435.a.b.l	ENSGT00940000156279.f.f	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000157027.n.b.a	ENSGT00940000158044.b.d	ENSGT00730000112225.f	ENSGT00390000016532.j	ENSGT00390000010427.c.q.a	ENSGT00940000155464.a.a.g	ENSGT00940000161387.a	ENSGT00390000006320.q	ENSGT00390000007918.c	ENSGT00390000002096.s.a	ENSGT00940000165259.a	ENSGT00970000193642
Salmo	ANCESTRAL SPECIES	54											ENSGT01100000263502.B.a.b.a.c	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b.a	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000156896.c	ENSGT01050000244879.a.a.b.d ##22	ENSGT00940000157435.a.b.l	ENSGT00940000156279.f.f	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000157027.n.b.a	ENSGT00940000158044.b.d	ENSGT00730000112225.f	ENSGT00390000016532.j	ENSGT00390000010427.c.q.a	ENSGT00940000155464.a.a.g	ENSGT00940000161387.a	ENSGT00390000006320.q	ENSGT00390000007918.c	ENSGT00390000002096.s.a	ENSGT00940000165259.a	ENSGT00970000193642
Atlantic salmon	MODERN SPECIES		ENSSSAG00000107446	ENSSSAG00000002757	ENSSSAG00000113795	ENSSSAG00000094785	ENSSSAG00000002555	pgam5 (ENSSSAG00000002540)	ENSSSAG00000115396	WDR70 (ENSSSAG00000002232)	gdnf (ENSSSAG00000002112) ##15	EGFLAM (ENSSSAG00000114100)	opn4xa (ENSSSAG00000002109)	pdlim5b (ENSSSAG00000002083)	bmpr1bb (ENSSSAG00000001977)	UNC5C (ENSSSAG00000001322)	glis3 (ENSSSAG00000001096)	rfx3 (ENSSSAG00000000897) ##22	smad4a (ENSSSAG00000000795)	ENSSSAG00000000757	npffr1l3 (ENSSSAG00000086335)	ENSSSAG00000000743	ENSSSAG00000083173	ENSSSAG00000000715	ENSSSAG00000089647	ENSSSAG00000000423	SLC1A3 (ENSSSAG00000000163)	RANBP3L (ENSSSAG00000001289)	NADK2 (ENSSSAG00000069298)	SKP2 (ENSSSAG00000069118)	ENSSSAG00000068165	ENSSSAG00000068114	cfap53 (ENSSSAG00000068107)
River trout	MODERN SPECIES	15	triap1 (ENSSTUG00000048728)	ENSSTUG00000048062	git2b (ENSSTUG00000047303)	ENSSTUG00000047242	FAM222A (ENSSTUG00000047236)	ENSSTUG00000047189	PGAM5 (ENSSTUG00000047186)	WDR70 (ENSSTUG00000046890)	gdnfa (ENSSTUG00000046858) ##15	EGFLAM (ENSSTUG00000046854)	opn4xa (ENSSTUG00000046836)	pdlim5b (ENSSTUG00000046781)	bmpr1bb (ENSSTUG00000046660)	UNC5C (ENSSTUG00000043259)	glis3 (ENSSTUG00000042999)	rfx3 (ENSSTUG00000042197) ##22	smad4a (ENSSTUG00000041923)	BMP10 (ENSSTUG00000041896)	npffr1l3 (ENSSTUG00000041878)	ARVCF (ENSSTUG00000041839)	ENSSTUG00000041824	ENSSTUG00000041795	nup155 (ENSSTUG00000039855)	ENSSTUG00000039642	SLC1A3 (ENSSTUG00000039319)	ENSSTUG00000039305	nadk2 (ENSSTUG00000039039)	skp2 (ENSSTUG00000039007)	ENSSTUG00000038043	ENSSTUG00000037985	cfap53 (ENSSTUG00000037964)
Oncorhynchus	ANCESTRAL SPECIES	67											ENSGT01100000263502.B.a.b.a.c	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b.a	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000156896.c	ENSGT01050000244879.a.a.b.d ##22	ENSGT00940000157435.a.b.l	ENSGT00940000156279.f.f	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000157027.n.b.a	ENSGT00940000158044.b.d	ENSGT00730000112225.f	ENSGT00390000016532.j	ENSGT00390000010427.c.q.a	ENSGT00940000155464.a.a.g	ENSGT00940000161387.a	ENSGT00390000006320.q	ENSGT00390000007918.c	ENSGT00390000002096.s.a	ENSGT00940000165259.a	ENSGT00970000193642
Oncorhynchus_a	ANCESTRAL SPECIES	74											ENSGT01100000263502.B.a.b.a.c	ENSGT00940000155292.db.b.b.a	ENSGT00940000155919.b.b.a	ENSGT00950000182815.a.a.a.a.a.c.c	ENSGT00940000156896.c	ENSGT01050000244879.a.a.b.d ##22	ENSGT00940000157435.a.b.l	ENSGT00940000156279.f.f	ENSGT01070000253744.b.a.a.a.a.g	ENSGT00940000157027.n.b.a	ENSGT00940000158044.b.d	ENSGT00730000112225.f	ENSGT00390000016532.j	ENSGT00390000010427.c.q.a	ENSGT00940000155464.a.a.g	ENSGT00940000161387.a	ENSGT00390000006320.q	ENSGT00390000007918.c	ENSGT00390000002096.s.a	ENSGT00940000165259.a	ENSGT00970000193642
Coho salmon	MODERN SPECIES	15	git2b (ENSOKIG00005025913)	ENSOKIG00005025600	FAM222A (ENSOKIG00005025590)	ANKLE2 (ENSOKIG00005025533)	PGAM5 (ENSOKIG00005025522)	ENSOKIG00005025511	WDR70 (ENSOKIG00005025420)	gdnfa (ENSOKIG00005025394) ##15	EGFLAM (ENSOKIG00005025368)	opn4xa (ENSOKIG00005025331)	ENSOKIG00005025319	pdlim5b (ENSOKIG00005025261)	bmpr1bb (ENSOKIG00005024956)	UNC5C (ENSOKIG00005022294)	glis3 (ENSOKIG00005022187)	rfx3 (ENSOKIG00005021336) ##22	smad4a (ENSOKIG00005021114)	BMP10 (ENSOKIG00005021094)	npffr1l3 (ENSOKIG00005021089)	ARVCF (ENSOKIG00005020840)	ENSOKIG00005020799	ENSOKIG00005020783	nup155 (ENSOKIG00005020587)	ENSOKIG00005020398	SLC1A3 (ENSOKIG00005020166)	ENSOKIG00005020130	NADK2 (ENSOKIG00005020080)	ENSOKIG00005019937	ENSOKIG00005019847	cfap53 (ENSOKIG00005019831)	myo5b (ENSOKIG00005019261)
Chinook salmon	MODERN SPECIES	12	triap1 (ENSOTSG00005037252)	ENSOTSG00005037265	git2b (ENSOTSG00005037644)	FAM222A (ENSOTSG00005038150)	ENSOTSG00005038153	PGAM5 (ENSOTSG00005038156)	ENSOTSG00005038158	WDR70 (ENSOTSG00005038161)	gdnfa (ENSOTSG00005038314) ##15	EGFLAM (ENSOTSG00005038318)	opn4xa (ENSOTSG00005038325)	pdlim5b (ENSOTSG00005038329)	bmpr1bb (ENSOTSG00005038334)	UNC5C (ENSOTSG00005038352)	glis3 (ENSOTSG00005042613)	rfx3 (ENSOTSG00005042621) ##22	smad4a (ENSOTSG00005042678)	BMP10 (ENSOTSG00005042742)	npffr1l3 (ENSOTSG00005042744)	ARVCF (ENSOTSG00005042886)	ENSOTSG00005042888	ENSOTSG00005042889	nup155 (ENSOTSG00005042895)	ENSOTSG00005042935	SLC1A3 (ENSOTSG00005042980)	RANBP3L (ENSOTSG00005043005)	nadk2 (ENSOTSG00005043007)	skp2 (ENSOTSG00005043011)	ENSOTSG00005043012	ENSOTSG00005043015	cfap53 (ENSOTSG00005043016)
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000044329	ENSOMYG00000044332	ENSOMYG00000044335	ENSOMYG00000044341	WDR70 (ENSOMYG00000044352)	ENSOMYG00000053593	gdnfa (ENSOMYG00000023974) ##15	EGFLAM (ENSOMYG00000024067)	opn4xa (ENSOMYG00000024137)	ENSOMYG00000071736	pdlim5b (ENSOMYG00000024242)	ENSOMYG00000052908	bmpr1bb (ENSOMYG00000024378)	UNC5C (ENSOMYG00000024830)	glis3 (ENSOMYG00000025428)	rfx3 (ENSOMYG00000025811) ##22	smad4a (ENSOMYG00000027201)	ENSOMYG00000056672	npffr1l3 (ENSOMYG00000064507)	ENSOMYG00000027312	ENSOMYG00000027345	ENSOMYG00000027761	ENSOMYG00000028750	SLC1A3 (ENSOMYG00000029087)	ENSOMYG00000058433	ENSOMYG00000029237	SKP2 (ENSOMYG00000029285)	ENSOMYG00000029426	ENSOMYG00000061263	ENSOMYG00000029474	ENSOMYG00000054485
Huchen	MODERN SPECIES	336															glis3 (ENSHHUG00000040396)	rfx3 (ENSHHUG00000040281) ##22	smad4a (ENSHHUG00000040209)	BMP10 (ENSHHUG00000040205)	npffr1l3 (ENSHHUG00000040093)	ARVCF (ENSHHUG00000040085)	ENSHHUG00000040073	nup155 (ENSHHUG00000040054)	ENSHHUG00000039753	SLC1A3 (ENSHHUG00000039718)	ENSHHUG00000039713	nadk2 (ENSHHUG00000039657)	skp2 (ENSHHUG00000039623)	ENSHHUG00000039501	cfap53 (ENSHHUG00000039484)	myo5b (ENSHHUG00000037123)	ENSHHUG00000037090
Northern pike	MODERN SPECIES	13	ENSELUG00000022023	FAM222A (ENSELUG00000022046)	ENSELUG00000022033	ENSELUG00000022120	PGAM5 (ENSELUG00000022185)	ENSELUG00000030270	ENSELUG00000022587	ENSELUG00000034272	WDR70 (ENSELUG00000022635)	gdnfa (ENSELUG00000022651) ##15	opn4xa (ENSELUG00000022879)	pdlim5b (ENSELUG00000023053)	bmpr1bb (ENSELUG00000023104)	UNC5C (ENSELUG00000023194)	glis3 (ENSELUG00000023233)	rfx3 (ENSELUG00000023330) ##22	smad4a (ENSELUG00000023358)	BMP10 (ENSELUG00000023371)	npffr1l3 (ENSELUG00000023384)	ARVCF (ENSELUG00000023403)	ENSELUG00000023427	ENSELUG00000023445	nup155 (ENSELUG00000023540)	ENSELUG00000023664	SLC1A3 (ENSELUG00000023711)	RANBP3L (ENSELUG00000023720)	nadk2 (ENSELUG00000023791)	skp2 (ENSELUG00000023797)	ENSELUG00000023909	ENSELUG00000034220	ENSELUG00000023982
Acanthomorphata	ANCESTRAL SPECIES	33	ENSGT00390000006265.b.c	ENSGT00950000182923.C.b	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177
Euacanthomorphacea	ANCESTRAL SPECIES	12	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00730000111276	ENSGT00940000176908
Percomorphaceae	ANCESTRAL SPECIES	16	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Percomorphaceae_B	ANCESTRAL SPECIES	16	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Percomorphaceae_C	ANCESTRAL SPECIES	17	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Percomorphaceae_D	ANCESTRAL SPECIES	15	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Anabantaria	ANCESTRAL SPECIES	12	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178	ENSGT00550000075100
Zig-zag eel	MODERN SPECIES	3	ENSMAMG00000011527	ENSMAMG00000011538	ENSMAMG00000011581	ENSMAMG00000011599	ENSMAMG00000011640	ENSMAMG00000026088	ENSMAMG00000011709	ENSMAMG00000027403	ENSMAMG00000011715	gdnfa (ENSMAMG00000011729) ##15	opn4xa (ENSMAMG00000011749)	pdlim5b (ENSMAMG00000011762)	bmpr1bb (ENSMAMG00000011816)	UNC5C (ENSMAMG00000011881)	glis3 (ENSMAMG00000011917)	rfx3 (ENSMAMG00000011935) ##22	smad4a (ENSMAMG00000011989)	ENSMAMG00000012033	ENSMAMG00000012047	ENSMAMG00000028079	ENSMAMG00000012098	ENSMAMG00000012172	ENSMAMG00000012373	ENSMAMG00000012395	ENSMAMG00000012458	ENSMAMG00000012466	ENSMAMG00000012491	ENSMAMG00000012627	ENSMAMG00000012709	ENSMAMG00000012750	ddx54 (ENSMAMG00000012784)
Anabantoidei	ANCESTRAL SPECIES	16	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178	ENSGT00550000075100
Climbing perch	MODERN SPECIES	3	UQCR10 (ENSATEG00000020091)	ENSATEG00000020049	ENSATEG00000020011	ENSATEG00000019984	ENSATEG00000019936	ENSATEG00000019872	ENSATEG00000019850	ENSATEG00000019843	ENSATEG00000019788	gdnfa (ENSATEG00000025610) ##15	opn4xa (ENSATEG00000019730)	pdlim5b (ENSATEG00000019707)	bmpr1bb (ENSATEG00000019663)	UNC5C (ENSATEG00000019548)	glis3 (ENSATEG00000019518)	rfx3 (ENSATEG00000019466) ##22	smad4a (ENSATEG00000019422)	ENSATEG00000019411	ENSATEG00000019396	ENSATEG00000019385	ENSATEG00000019247	ENSATEG00000019067	ENSATEG00000018999	ENSATEG00000018932	ENSATEG00000018879	ENSATEG00000018816	ENSATEG00000018719	exosc2 (ENSATEG00000018680)	ENSATEG00000018625	ENSATEG00000018600	ddx54 (ENSATEG00000018529)
Siamese fighting fish	MODERN SPECIES	3	uqcr10 (ENSBSLG00000003705)	GAL3ST1 (ENSBSLG00000003713)	PRODH (ENSBSLG00000003837)	srsf9 (ENSBSLG00000004081)	ENSBSLG00000004087	git2b (ENSBSLG00000004162)	FAM222A (ENSBSLG00000004390)	ENSBSLG00000004775	WDR70 (ENSBSLG00000005018)	gdnfa (ENSBSLG00000005905) ##15	opn4xa (ENSBSLG00000005912)	pdlim5b (ENSBSLG00000006360)	bmpr1bb (ENSBSLG00000006648)	UNC5C (ENSBSLG00000007167)	glis3 (ENSBSLG00000009272)	rfx3 (ENSBSLG00000009302) ##22	smad4a (ENSBSLG00000009477)	BMP10 (ENSBSLG00000009573)	ARVCF (ENSBSLG00000009733)	ENSBSLG00000010003	ENSBSLG00000010016	nup155 (ENSBSLG00000010054)	ENSBSLG00000010301	ENSBSLG00000010326	UHRF2 (ENSBSLG00000010819)	oaz1b (ENSBSLG00000011504)	ERMP1 (ENSBSLG00000011523)	RIC1 (ENSBSLG00000011928)	exosc2 (ENSBSLG00000012167)	ABL1 (ENSBSLG00000012314)	rab14 (ENSBSLG00000012526)
Carangaria	ANCESTRAL SPECIES	17	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Carangaria_A	ANCESTRAL SPECIES	18	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178	ENSGT00550000075100
Seriola	ANCESTRAL SPECIES	19	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178	ENSGT00550000075100
Greater amberjack	MODERN SPECIES	216													bmpr1bb (ENSSDUG00000005566)	UNC5C (ENSSDUG00000005477)	glis3 (ENSSDUG00000005433)	rfx3 (ENSSDUG00000005356) ##22	smad4a (ENSSDUG00000005304)	BMP10 (ENSSDUG00000005285)	ARVCF (ENSSDUG00000005215)	ENSSDUG00000005185	ENSSDUG00000005179	nup155 (ENSSDUG00000005030)	ENSSDUG00000005001	ENSSDUG00000004924	ENSSDUG00000004895	UHRF2 (ENSSDUG00000004825)	oaz1b (ENSSDUG00000004803)	ERMP1 (ENSSDUG00000004729)	RIC1 (ENSSDUG00000004672)	exosc2 (ENSSDUG00000004634)	ABL1 (ENSSDUG00000004590)
Yellowtail amberjack	MODERN SPECIES	2993	GAL3ST1 (ENSSLDG00000012395)	ENSSLDG00000012346	srsf9 (ENSSLDG00000012305)	ENSSLDG00000012195	git2b (ENSSLDG00000012072)	ENSSLDG00000012023	FAM222A (ENSSLDG00000012007)	ENSSLDG00000011896	WDR70 (ENSSLDG00000011844)	gdnfa (ENSSLDG00000011810) ##15	opn4xa (ENSSLDG00000011793)	pdlim5b (ENSSLDG00000011763)	bmpr1bb (ENSSLDG00000011716)	UNC5C (ENSSLDG00000011559)	glis3 (ENSSLDG00000011489)	rfx3 (ENSSLDG00000011445) ##22	smad4a (ENSSLDG00000011357)	BMP10 (ENSSLDG00000011329)	ARVCF (ENSSLDG00000011280)	ENSSLDG00000011205	ENSSLDG00000011179	nup155 (ENSSLDG00000011031)	ENSSLDG00000010985	ENSSLDG00000010900	ENSSLDG00000010851	UHRF2 (ENSSLDG00000010802)	oaz1b (ENSSLDG00000010778)	ERMP1 (ENSSLDG00000010736)	RIC1 (ENSSLDG00000010673)	exosc2 (ENSSLDG00000010616)	ABL1 (ENSSLDG00000010560)
Barramundi perch	MODERN SPECIES	269														UNC5C (ENSLCAG00010006614)	glis3 (ENSLCAG00010006586)	rfx3 (ENSLCAG00010006561) ##22	smad4a (ENSLCAG00010006525)	BMP10 (ENSLCAG00010006514)	ARVCF (ENSLCAG00010006506)	ENSLCAG00010006499	nup155 (ENSLCAG00010006449)	ENSLCAG00010006412	ENSLCAG00010006402	UHRF2 (ENSLCAG00010006354)	oaz1b (ENSLCAG00010006337)	ENSLCAG00010006334	ERMP1 (ENSLCAG00010006304)	RIC1 (ENSLCAG00010005942)	exosc2 (ENSLCAG00010005872)	ABL1 (ENSLCAG00010005729)	rab14 (ENSLCAG00010005704)
Pleuronectoidei	ANCESTRAL SPECIES	7	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Tongue sole	MODERN SPECIES	5	fam78ab (ENSCSEG00000017421)	ENSCSEG00000017366	NACC2 (ENSCSEG00000017316)	LHX3 (ENSCSEG00000017295)	ENSCSEG00000017292	ENSCSEG00000017290	ak1 (ENSCSEG00000017279)	ENSCSEG00000017255	brinp1 (ENSCSEG00000017221)	ENSCSEG00000017207	trim32 (ENSCSEG00000017205)	ASTN2 (ENSCSEG00000017190)	bmpr1bb (ENSCSEG00000016981)	UNC5C (ENSCSEG00000016909)	glis3 (ENSCSEG00000016889)	rfx3 (ENSCSEG00000016846) ##22	smad4a (ENSCSEG00000016829)	BMP10 (ENSCSEG00000016823)	ARVCF (ENSCSEG00000016810)	ENSCSEG00000016795	ENSCSEG00000016790	nup155 (ENSCSEG00000016754)	ENSCSEG00000016748	ENSCSEG00000016739	ENSCSEG00000016736	MLANA (ENSCSEG00000016732)	ENSCSEG00000016706	ENSCSEG00000016668	oaz1b (ENSCSEG00000016656)	oaz1b (ENSCSEG00000016651)	ERMP1 (ENSCSEG00000016609)
Turbot	MODERN SPECIES	7	UQCR10 (ENSSMAG00000001912)	ENSSMAG00000001941	ENSSMAG00000001963	ENSSMAG00000002039	ENSSMAG00000002054	ENSSMAG00000002120	ENSSMAG00000002233	ENSSMAG00000002249	ENSSMAG00000002311	gdnfa (ENSSMAG00000002331) ##15	opn4xa (ENSSMAG00000002337)	pdlim5b (ENSSMAG00000002349)	bmpr1bb (ENSSMAG00000002364)	UNC5C (ENSSMAG00000002408)	glis3 (ENSSMAG00000002564)	rfx3 (ENSSMAG00000002591) ##22	smad4a (ENSSMAG00000002673)	ENSSMAG00000002714	ENSSMAG00000002728	ENSSMAG00000002742	ENSSMAG00000002759	ENSSMAG00000002770	ENSSMAG00000002824	ENSSMAG00000002926	ENSSMAG00000002939	ENSSMAG00000002990	ENSSMAG00000003001	ENSSMAG00000003043	exosc2 (ENSSMAG00000003112)	ENSSMAG00000003144	ENSSMAG00000003166
Eupercaria	ANCESTRAL SPECIES	13	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Tetraodontidae	ANCESTRAL SPECIES	21	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532.l	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Tetraodon	MODERN SPECIES	19	GAL3ST1 (ENSTNIG00000009065)	PRODH (ENSTNIG00000009064)	srsf9 (ENSTNIG00000000697)	ENSTNIG00000009063	git2b (ENSTNIG00000009062)	ENSTNIG00000009061	FAM222A (ENSTNIG00000009060)	ENSTNIG00000009059	WDR70 (ENSTNIG00000009058)	gdnfa (ENSTNIG00000009057) ##15	opn4xa (ENSTNIG00000009056)	pdlim5b (ENSTNIG00000009055)	bmpr1bb (ENSTNIG00000009054)	UNC5C (ENSTNIG00000009053)	ENSTNIG00000009052	rfx3 (ENSTNIG00000009051) ##22	smad4a (ENSTNIG00000009050)	BMP10 (ENSTNIG00000009049)	ARVCF (ENSTNIG00000009048)	ENSTNIG00000009047	nup155 (ENSTNIG00000009046)	ENSTNIG00000009045	ENSTNIG00000009044	ENSTNIG00000009043	oaz1b (ENSTNIG00000001544)	ERMP1 (ENSTNIG00000009042)	RIC1 (ENSTNIG00000009041)	ABL1 (ENSTNIG00000009040)	rab14 (ENSTNIG00000009039)	ENSTNIG00000009038	ddx54 (ENSTNIG00000009037)
Eupecaria_A	ANCESTRAL SPECIES	14	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Ballan wrasse	MODERN SPECIES	28	ENSLBEG00000017401	srsf9 (ENSLBEG00000017430)	ENSLBEG00000017472	git2b (ENSLBEG00000017550)	ENSLBEG00000017619	FAM222A (ENSLBEG00000017651)	ENSLBEG00000017669	ENSLBEG00000017710	WDR70 (ENSLBEG00000017858)	gdnfa (ENSLBEG00000017940) ##15	opn4xa (ENSLBEG00000017961)	pdlim5b (ENSLBEG00000017996)	bmpr1bb (ENSLBEG00000018060)	UNC5C (ENSLBEG00000018140)	glis3 (ENSLBEG00000018235)	rfx3 (ENSLBEG00000018260) ##22	smad4a (ENSLBEG00000018291)	BMP10 (ENSLBEG00000018326)	ARVCF (ENSLBEG00000018360)	ENSLBEG00000018432	ENSLBEG00000018492	nup155 (ENSLBEG00000018561)	ENSLBEG00000018683	ENSLBEG00000018699	ENSLBEG00000018855	ENSLBEG00000018934	UHRF2 (ENSLBEG00000018956)	oaz1b (ENSLBEG00000019066)	ERMP1 (ENSLBEG00000019097)	RIC1 (ENSLBEG00000019176)	exosc2 (ENSLBEG00000019269)
Eupecaria_B	ANCESTRAL SPECIES	14	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Eupecaria_C	ANCESTRAL SPECIES	9	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	6	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
European seabass	MODERN SPECIES	9	ENSDLAG00005029972	zmat5 (ENSDLAG00005026922)	ENSDLAG00005021183	ENSDLAG00005021162	ENSDLAG00005021027	ENSDLAG00005016212	ENSDLAG00005015748	ENSDLAG00005016044	ENSDLAG00005015770	gdnfa (ENSDLAG00005029352) ##15	opn4xa (ENSDLAG00005015716)	pdlim5b (ENSDLAG00005027877)	bmpr1bb (ENSDLAG00005015061)	UNC5C (ENSDLAG00005012944)	glis3 (ENSDLAG00005012865)	rfx3 (ENSDLAG00005012256) ##22	smad4a (ENSDLAG00005032169)	ENSDLAG00005012213	ENSDLAG00005011789	ENSDLAG00005011755	ENSDLAG00005011767	ENSDLAG00005011338	ENSDLAG00005011169	ENSDLAG00005011109	ENSDLAG00005009969	ENSDLAG00005009941	ENSDLAG00005009689	ENSDLAG00005008555	exosc2 (ENSDLAG00005008514)	ENSDLAG00005008230	ENSDLAG00005008202
Large yellow croaker	MODERN SPECIES	4	GAL3ST1 (ENSLCRG00005003601)	ENSLCRG00005003606	srsf9 (ENSLCRG00005004306)	ENSLCRG00005004314	git2b (ENSLCRG00005004331)	ENSLCRG00005004370	FAM222A (ENSLCRG00005004373)	ENSLCRG00005004383	WDR70 (ENSLCRG00005004409)	gdnfa (ENSLCRG00005005391) ##15	opn4xa (ENSLCRG00005005397)	pdlim5b (ENSLCRG00005005408)	bmpr1bb (ENSLCRG00005005416)	UNC5C (ENSLCRG00005005820)	glis3 (ENSLCRG00005009538)	rfx3 (ENSLCRG00005009549) ##22	smad4a (ENSLCRG00005011093)	BMP10 (ENSLCRG00005011104)	ARVCF (ENSLCRG00005011106)	ENSLCRG00005011118	ENSLCRG00005011119	nup155 (ENSLCRG00005011128)	ENSLCRG00005011233	MLANA (ENSLCRG00005011335)	KIAA2026 (ENSLCRG00005011343)	UHRF2 (ENSLCRG00005011361)	oaz1b (ENSLCRG00005011446)	ERMP1 (ENSLCRG00005011455)	RIC1 (ENSLCRG00005011482)	exosc2 (ENSLCRG00005011489)	ABL1 (ENSLCRG00005011496)
Gilthead seabream	MODERN SPECIES	3	GAL3ST1 (ENSSAUG00010021529)	ENSSAUG00010021534	srsf9 (ENSSAUG00010021704)	ENSSAUG00010021723	git2b (ENSSAUG00010021972)	ENSSAUG00010022158	FAM222A (ENSSAUG00010022159)	ENSSAUG00010022160	WDR70 (ENSSAUG00010022165)	gdnfa (ENSSAUG00010022502) ##15	opn4xa (ENSSAUG00010022504)	pdlim5b (ENSSAUG00010022506)	bmpr1bb (ENSSAUG00010022511)	UNC5C (ENSSAUG00010022876)	glis3 (ENSSAUG00010024264)	rfx3 (ENSSAUG00010024276) ##22	smad4a (ENSSAUG00010024325)	BMP10 (ENSSAUG00010024327)	ARVCF (ENSSAUG00010024329)	ENSSAUG00010024333	nup155 (ENSSAUG00010024341)	ENSSAUG00010024585	MLANA (ENSSAUG00010024670)	KIAA2026 (ENSSAUG00010024672)	UHRF2 (ENSSAUG00010024681)	oaz1b (ENSSAUG00010024738)	ERMP1 (ENSSAUG00010024745)	RIC1 (ENSSAUG00010024782)	exosc2 (ENSSAUG00010024796)	ABL1 (ENSSAUG00010024811)	rab14 (ENSSAUG00010024847)
Perciformes	ANCESTRAL SPECIES	16	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Perciformes_a	ANCESTRAL SPECIES	12	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178	ENSGT00550000075100
Pike perch	MODERN SPECIES	48	srsf9 (ENSSLUG00000022087)	ENSSLUG00000022077	git2b (ENSSLUG00000021797)	ENSSLUG00000021752	FAM222A (ENSSLUG00000021750)	ENSSLUG00000021744	WDR70 (ENSSLUG00000020966)	gdnfa (ENSSLUG00000020913) ##15	opn4xa (ENSSLUG00000020911)	pdlim5b (ENSSLUG00000020893)	ENSSLUG00000020887	ENSSLUG00000020884	bmpr1bb (ENSSLUG00000020466)	UNC5C (ENSSLUG00000017419)	glis3 (ENSSLUG00000017236)	rfx3 (ENSSLUG00000017230) ##22	smad4a (ENSSLUG00000017212)	BMP10 (ENSSLUG00000017205)	ARVCF (ENSSLUG00000017152)	ENSSLUG00000017136	ENSSLUG00000017131	nup155 (ENSSLUG00000016520)	ENSSLUG00000016379	ENSSLUG00000016357	UHRF2 (ENSSLUG00000016186)	oaz1b (ENSSLUG00000016174)	ERMP1 (ENSSLUG00000016162)	RIC1 (ENSSLUG00000016075)	exosc2 (ENSSLUG00000016017)	ABL1 (ENSSLUG00000015925)	rab14 (ENSSLUG00000015897)
Channel bull blenny	MODERN SPECIES	3	ENSCGOG00000020373	ENSCGOG00000020371	srsf9 (ENSCGOG00000020370)	ENSCGOG00000019195	git2b (ENSCGOG00000017411)	ENSCGOG00000019162	FAM222A (ENSCGOG00000017377)	WDR70 (ENSCGOG00000017028)	gdnfa (ENSCGOG00000017012) ##15	opn4xa (ENSCGOG00000016995)	pdlim5b (ENSCGOG00000016992)	bmpr1bb (ENSCGOG00000016442)	UNC5C (ENSCGOG00000014277)	ENSCGOG00000014204	glis3 (ENSCGOG00000014201)	rfx3 (ENSCGOG00000014006) ##22	smad4a (ENSCGOG00000012994)	BMP10 (ENSCGOG00000012935)	ARVCF (ENSCGOG00000012737)	ENSCGOG00000012732	ENSCGOG00000012730	nup155 (ENSCGOG00000011506)	ENSCGOG00000008729	ENSCGOG00000008669	UHRF2 (ENSCGOG00000008002)	oaz1b (ENSCGOG00000007978)	ERMP1 (ENSCGOG00000007891)	RIC1 (ENSCGOG00000007380)	exosc2 (ENSCGOG00000007190)	ABL1 (ENSCGOG00000007126)	rab14 (ENSCGOG00000006925)
Cottioidei	ANCESTRAL SPECIES	18	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Stickleback	MODERN SPECIES	13	PRODH (ENSGACG00000016928)	srsf9 (ENSGACG00000016921)	ENSGACG00000016916	git2b (ENSGACG00000016912)	ENSGACG00000016911	FAM222A (ENSGACG00000016910)	ENSGACG00000016908	ENSGACG00000016907	ENSGACG00000016906	WDR70 (ENSGACG00000016889)	gdnfa (ENSGACG00000016887) ##15	opn4xa (ENSGACG00000016885)	pdlim5b (ENSGACG00000016879)	bmpr1bb (ENSGACG00000016869)	UNC5C (ENSGACG00000016867)	rfx3 (ENSGACG00000016864) ##22	smad4a (ENSGACG00000016858)	BMP10 (ENSGACG00000016855)	ARVCF (ENSGACG00000016852)	ENSGACG00000016849	nup155 (ENSGACG00000016842)	ENSGACG00000016835	ENSGACG00000016833	ENSGACG00000016831	oaz1b (ENSGACG00000016830)	ERMP1 (ENSGACG00000016822)	RIC1 (ENSGACG00000016817)	exosc2 (ENSGACG00000016805)	ABL1 (ENSGACG00000016802)	RAB14 (ENSGACG00000016799)	ddx54 (ENSGACG00000016793)
Lumpfish	MODERN SPECIES	3	GAL3ST1 (ENSCLMG00005016174)	ENSCLMG00005016156	srsf9 (ENSCLMG00005016142)	ENSCLMG00005016138	git2b (ENSCLMG00005015872)	ENSCLMG00005015846	ENSCLMG00005015845	FAM222A (ENSCLMG00005015844)	WDR70 (ENSCLMG00005014985)	gdnfa (ENSCLMG00005014972) ##15	opn4xa (ENSCLMG00005014962)	pdlim5b (ENSCLMG00005014956)	bmpr1bb (ENSCLMG00005014799)	UNC5C (ENSCLMG00005014796)	glis3 (ENSCLMG00005014786)	rfx3 (ENSCLMG00005013930) ##22	smad4a (ENSCLMG00005013627)	BMP10 (ENSCLMG00005013623)	ARVCF (ENSCLMG00005013622)	ENSCLMG00005013615	ENSCLMG00005013613	nup155 (ENSCLMG00005013612)	ENSCLMG00005002624	ENSCLMG00005002563	ENSCLMG00005002561	UHRF2 (ENSCLMG00005002519)	oaz1b (ENSCLMG00005002514)	ERMP1 (ENSCLMG00005002477)	RIC1 (ENSCLMG00005002458)	exosc2 (ENSCLMG00005002457)	ABL1 (ENSCLMG00005002301)
Ovalentaria	ANCESTRAL SPECIES	16	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00940000175928	ENSGT00970000194241	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601
Atherinomorphae	ANCESTRAL SPECIES	17	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00940000175928	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839
Cyprinodontiformes	ANCESTRAL SPECIES	16	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00940000175928	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955
Aplocheiloidei	ANCESTRAL SPECIES	5	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Turquoise killifish	MODERN SPECIES	1611	SGSM1 (ENSNFUG00015009644)	git2b (ENSNFUG00015009948)	GLTPB (ENSNFUG00015010193)	FAM222A (ENSNFUG00015010202)	ENSNFUG00015010214	WDR70 (ENSNFUG00015010238)	GDNFA (ENSNFUG00015010259) ##15	opn4xa (ENSNFUG00015010269)	ENSNFUG00015010313	ENSNFUG00015010321	bmpr1bb (ENSNFUG00015010344)	UNC5C (ENSNFUG00015010709)	ENSNFUG00015015101	glis3 (ENSNFUG00015015108)	ENSNFUG00015015164	RFX3 (ENSNFUG00015015183) ##22	smad4a (ENSNFUG00015015586)	BMP10 (ENSNFUG00015015646)	ARVCFA (ENSNFUG00015015668)	ENSNFUG00015015853	ENSNFUG00015015867	nup155 (ENSNFUG00015015876)	ENSNFUG00015015999	ENSNFUG00015016110	ENSNFUG00015016114	ENSNFUG00015016134	UHRF2 (ENSNFUG00015016249)	oaz1b (ENSNFUG00015018922)	ENSNFUG00015018925	ERMP1 (ENSNFUG00015018927)	KIAA1432 (ENSNFUG00015018957)
Mangrove rivulus	MODERN SPECIES	279											opn4xa (ENSKMAG00000010258)	pdlim5b (ENSKMAG00000010235)	bmpr1bb (ENSKMAG00000010188)	UNC5C (ENSKMAG00000010058)	glis3 (ENSKMAG00000010008)	rfx3 (ENSKMAG00000009937) ##22	smad4a (ENSKMAG00000009868)	BMP10 (ENSKMAG00000009843)	ARVCF (ENSKMAG00000009822)	ENSKMAG00000009807	ENSKMAG00000009797	nup155 (ENSKMAG00000009667)	tmem141 (ENSKMAG00000009630)	SAPCD2 (ENSKMAG00000009594)	ENSKMAG00000009563	ENSKMAG00000009513	PAX8 (ENSKMAG00000009439)
Cyprinodontoidei	ANCESTRAL SPECIES	16	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00940000175928	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955
Poeciliinae	ANCESTRAL SPECIES	12	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Poecilia	ANCESTRAL SPECIES	12	ENSGT00390000006265.b.c	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
NAME_6	ANCESTRAL SPECIES	12	ENSGT00940000180190	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b.c	ENSGT00940000155919.b.b.d	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Amazon molly	MODERN SPECIES	258	ENSPFOG00000019791	srsf9 (ENSPFOG00000019792)	ENSPFOG00000019793	git2b (ENSPFOG00000019794)	ENSPFOG00000019795	FAM222A (ENSPFOG00000019796)	ENSPFOG00000019797	WDR70 (ENSPFOG00000019798)	gdnfa (ENSPFOG00000019799) ##15	opn4xa (ENSPFOG00000019800)	pdlim5b (ENSPFOG00000019801)	bmpr1bb (ENSPFOG00000019802)	bmpr1bb (ENSPFOG00000019803)	UNC5C (ENSPFOG00000019804)	glis3 (ENSPFOG00000019805)	rfx3 (ENSPFOG00000019806) ##22	smad4a (ENSPFOG00000019807)	BMP10 (ENSPFOG00000019808)	ARVCF (ENSPFOG00000019809)	ENSPFOG00000019810	ENSPFOG00000019953	nup155 (ENSPFOG00000019811)	ENSPFOG00000019812	MLANA (ENSPFOG00000019813)	KIAA2026 (ENSPFOG00000019814)	UHRF2 (ENSPFOG00000019815)	oaz1b (ENSPFOG00000019816)	ERMP1 (ENSPFOG00000019817)	RIC1 (ENSPFOG00000019818)	exosc2 (ENSPFOG00000019819)	ABL1 (ENSPFOG00000019820)
Sailfin molly	MODERN SPECIES	103															glis3 (ENSPLAG00000005185)	rfx3 (ENSPLAG00000005171) ##22	smad4a (ENSPLAG00000005111)	BMP10 (ENSPLAG00000005066)	ARVCF (ENSPLAG00000005050)	ENSPLAG00000004969	ENSPLAG00000004947	nup155 (ENSPLAG00000004934)	ENSPLAG00000004889	ENSPLAG00000004867	ENSPLAG00000004795	UHRF2 (ENSPLAG00000004783)	oaz1b (ENSPLAG00000004747)	ERMP1 (ENSPLAG00000004733)	RIC1 (ENSPLAG00000004669)	exosc2 (ENSPLAG00000004605)	ABL1 (ENSPLAG00000004579)
Guppy	MODERN SPECIES	442	GAL3ST1 (ENSPREG00000013000)	ENSPREG00000013032	srsf9 (ENSPREG00000013165)	ENSPREG00000013232	git2b (ENSPREG00000013392)	ENSPREG00000013457	FAM222A (ENSPREG00000013472)	ENSPREG00000013485	WDR70 (ENSPREG00000013539)	gdnfa (ENSPREG00000013564) ##15	opn4xa (ENSPREG00000013581)	pdlim5b (ENSPREG00000013658)	bmpr1bb (ENSPREG00000013685)	UNC5C (ENSPREG00000013711)	glis3 (ENSPREG00000013743)	rfx3 (ENSPREG00000013770) ##22	smad4a (ENSPREG00000013851)	BMP10 (ENSPREG00000013876)	ARVCF (ENSPREG00000013892)	ENSPREG00000013920	ENSPREG00000013943	nup155 (ENSPREG00000013997)	ENSPREG00000014046	ENSPREG00000014052	ENSPREG00000014082	ENSPREG00000014165	ENSPREG00000014220	oaz1b (ENSPREG00000014246)	ERMP1 (ENSPREG00000014257)	RIC1 (ENSPREG00000014275)	exosc2 (ENSPREG00000014306)
Platyfish	MODERN SPECIES	22	uqcr10 (ENSXMAG00000001412)	GAL3ST1 (ENSXMAG00000001414)	ENSXMAG00000001415	srsf9 (ENSXMAG00000001438)	ENSXMAG00000001453	git2b (ENSXMAG00000001494)	ENSXMAG00000001549	FAM222A (ENSXMAG00000001561)	WDR70 (ENSXMAG00000001567)	gdnfa (ENSXMAG00000021439) ##15	opn4xa (ENSXMAG00000001613)	pdlim5b (ENSXMAG00000001628)	bmpr1bb (ENSXMAG00000001635)	UNC5C (ENSXMAG00000001669)	glis3 (ENSXMAG00000005013)	rfx3 (ENSXMAG00000005015) ##22	smad4a (ENSXMAG00000005051)	BMP10 (ENSXMAG00000005068)	ARVCF (ENSXMAG00000005070)	ENSXMAG00000025194	ENSXMAG00000020021	nup155 (ENSXMAG00000005080)	ENSXMAG00000030005	ENSXMAG00000005119	ENSXMAG00000005171	ENSXMAG00000005170	UHRF2 (ENSXMAG00000005174)	oaz1b (ENSXMAG00000028044)	ERMP1 (ENSXMAG00000005226)	RIC1 (ENSXMAG00000005243)	exosc2 (ENSXMAG00000005265)
NAME_4	ANCESTRAL SPECIES		ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00940000175928	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955
Sheepshead minnow	MODERN SPECIES	330													bmpr1bb (ENSCVAG00000021623)	UNC5C (ENSCVAG00000021696)	ENSCVAG00000021725	rfx3 (ENSCVAG00000021772) ##22	smad4a (ENSCVAG00000021820)	BMP10 (ENSCVAG00000021830)	ENSCVAG00000021850	ENSCVAG00000021863	ENSCVAG00000021874	nup155 (ENSCVAG00000021951)	ENSCVAG00000021961	ENSCVAG00000021971	MLANA (ENSCVAG00000021976)	ENSCVAG00000022010	UHRF2 (ENSCVAG00000022094)	ENSCVAG00000022105	ERMP1 (ENSCVAG00000022152)	RIC1 (ENSCVAG00000022235)	exosc2 (ENSCVAG00000022260)
Mummichog	MODERN SPECIES	2260	GAL3ST1 (ENSFHEG00000020865)	srsf9 (ENSFHEG00000020851)	ENSFHEG00000020803	git2b (ENSFHEG00000020748)	ENSFHEG00000020695	FAM222A (ENSFHEG00000020669)	ENSFHEG00000020660	WDR70 (ENSFHEG00000020484)	gdnfa (ENSFHEG00000020391) ##15	opn4xa (ENSFHEG00000020381)	pdlim5b (ENSFHEG00000020331)	bmpr1bb (ENSFHEG00000020318)	ENSFHEG00000020268	UNC5C (ENSFHEG00000020244)	glis3 (ENSFHEG00000020137)	rfx3 (ENSFHEG00000020129) ##22	smad4a (ENSFHEG00000020053)	BMP10 (ENSFHEG00000019628)	ARVCF (ENSFHEG00000019614)	ENSFHEG00000019571	ENSFHEG00000019556	nup155 (ENSFHEG00000019546)	ENSFHEG00000019424	ENSFHEG00000018991	ENSFHEG00000018962	UHRF2 (ENSFHEG00000018882)	oaz1b (ENSFHEG00000018867)	ERMP1 (ENSFHEG00000018835)	RIC1 (ENSFHEG00000018706)	exosc2 (ENSFHEG00000018571)	ABL1 (ENSFHEG00000018524)
Oryzias	ANCESTRAL SPECIES	9	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Oryzias_b	ANCESTRAL SPECIES	4	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000176177	ENSGT00390000010427.c.s.a	ENSGT00970000194241	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955
Indian medaka	MODERN SPECIES	30	ENSOMEG00000002593	srsf9 (ENSOMEG00000002601)	ENSOMEG00000002630	git2b (ENSOMEG00000002699)	ENSOMEG00000002721	FAM222A (ENSOMEG00000002728)	WDR70 (ENSOMEG00000002766)	gdnfa (ENSOMEG00000002782) ##15	opn4xa (ENSOMEG00000002798)	pdlim5b (ENSOMEG00000000058)	bmpr1bb (ENSOMEG00000002834)	UNC5C (ENSOMEG00000002886)	glis3 (ENSOMEG00000002935)	smad4a (ENSOMEG00000002982)	BMP10 (ENSOMEG00000002990)	rfx3 (ENSOMEG00000003021) ##22	ARVCF (ENSOMEG00000003081)	ENSOMEG00000000956	ENSOMEG00000003115	nup155 (ENSOMEG00000003206)	ENSOMEG00000003253	ENSOMEG00000003269	ENSOMEG00000003288	ENSOMEG00000003312	UHRF2 (ENSOMEG00000003365)	oaz1b (ENSOMEG00000003395)	ERMP1 (ENSOMEG00000003427)	RIC1 (ENSOMEG00000003478)	exosc2 (ENSOMEG00000003533)	ABL1 (ENSOMEG00000003602)	rab14 (ENSOMEG00000003623)
Javanese ricefish	MODERN SPECIES	3	uqcr10 (ENSOJAG00000020509)	GAL3ST1 (ENSOJAG00000020515)	ENSOJAG00000020522	srsf9 (ENSOJAG00000020545)	ENSOJAG00000020589	git2b (ENSOJAG00000001875)	ENSOJAG00000002247	FAM222A (ENSOJAG00000002267)	WDR70 (ENSOJAG00000002290)	gdnfa (ENSOJAG00000002333) ##15	opn4xa (ENSOJAG00000002350)	pdlim5b (ENSOJAG00000002386)	bmpr1bb (ENSOJAG00000002422)	UNC5C (ENSOJAG00000002794)	glis3 (ENSOJAG00000004227)	rfx3 (ENSOJAG00000004283) ##22	smad4a (ENSOJAG00000004544)	BMP10 (ENSOJAG00000004699)	ENSOJAG00000004903	ENSOJAG00000004961	MLANA (ENSOJAG00000005239)	KIAA2026 (ENSOJAG00000005246)	UHRF2 (ENSOJAG00000005315)	oaz1b (ENSOJAG00000005802)	ERMP1 (ENSOJAG00000005824)	RIC1 (ENSOJAG00000005894)	exosc2 (ENSOJAG00000005986)	ABL1 (ENSOJAG00000006145)	rab14 (ENSOJAG00000006196)	ddx54 (ENSOJAG00000006259)	tbx5a (ENSOJAG00000006790)
Oryzias_a	ANCESTRAL SPECIES	12	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a
Chinese medaka	MODERN SPECIES	489															glis3 (ENSOSIG00000006026)	rfx3 (ENSOSIG00000005600) ##22	smad4a (ENSOSIG00000005505)	BMP10 (ENSOSIG00000005497)	ENSOSIG00000005495	ENSOSIG00000005494	ENSOSIG00000003125	ENSOSIG00000003071	UHRF2 (ENSOSIG00000002953)	oaz1b (ENSOSIG00000002866)	ERMP1 (ENSOSIG00000002812)	RIC1 (ENSOSIG00000000883)	exosc2 (ENSOSIG00000000805)	ABL1 (ENSOSIG00000000316)	rab14 (ENSOSIG00000000271)	ddx54 (ENSOSIG00000000192)	tbx5a (ENSOSIG00000019232)
Japanese Medaka HdrR	MODERN SPECIES	3	ENSORLG00000008121	ENSORLG00000030067	ENSORLG00000008119	srsf9 (ENSORLG00000023709)	ENSORLG00000008100	git2b (ENSORLG00000008075)	ENSORLG00000007931	ENSORLG00000007923	WDR70 (ENSORLG00000007897)	gdnfa (ENSORLG00000007873) ##15	opn4xa (ENSORLG00000007864)	pdlim5b (ENSORLG00000007854)	bmpr1bb (ENSORLG00000007833)	UNC5C (ENSORLG00000007815)	glis3 (ENSORLG00000007755)	rfx3 (ENSORLG00000007747) ##22	smad4a (ENSORLG00000007703)	ENSORLG00000022833	ARVCF (ENSORLG00000007658)	ENSORLG00000007651	ENSORLG00000028358	nup155 (ENSORLG00000007635)	ENSORLG00000007606	MLANA (ENSORLG00000007559)	ENSORLG00000026627	oaz1b (ENSORLG00000007502)	UHRF2 (ENSORLG00000007546)	ERMP1 (ENSORLG00000007495)	RIC1 (ENSORLG00000007468)	exosc2 (ENSORLG00000007443)	ABL1 (ENSORLG00000007426)
Ovalentaria_B	ANCESTRAL SPECIES	14	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00940000176177	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955
Pomacentridae	ANCESTRAL SPECIES	12	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Pomacentridae_A	ANCESTRAL SPECIES	10	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00940000175928	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Amphiprion	ANCESTRAL SPECIES	5	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225.a	ENSGT00390000016532	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B	ENSGT00940000153838.a	ENSGT00940000155178
Orange clownfish	MODERN SPECIES	7	GAL3ST1 (ENSAPEG00000011822)	ENSAPEG00000011847	srsf9 (ENSAPEG00000011908)	ENSAPEG00000011934	git2b (ENSAPEG00000012069)	ENSAPEG00000012206	FAM222A (ENSAPEG00000012249)	WDR70 (ENSAPEG00000012274)	gdnfa (ENSAPEG00000012340) ##15	opn4xa (ENSAPEG00000012350)	pdlim5b (ENSAPEG00000012414)	bmpr1bb (ENSAPEG00000012440)	UNC5C (ENSAPEG00000012460)	ENSAPEG00000012519	glis3 (ENSAPEG00000012665)	rfx3 (ENSAPEG00000012681) ##22	smad4a (ENSAPEG00000012744)	BMP10 (ENSAPEG00000012780)	ARVCF (ENSAPEG00000012790)	ENSAPEG00000012806	ENSAPEG00000012876	nup155 (ENSAPEG00000012883)	ENSAPEG00000013035	MLANA (ENSAPEG00000013661)	KIAA2026 (ENSAPEG00000013675)	UHRF2 (ENSAPEG00000013724)	oaz1b (ENSAPEG00000013799)	ERMP1 (ENSAPEG00000013820)	RIC1 (ENSAPEG00000013948)	exosc2 (ENSAPEG00000014088)	ABL1 (ENSAPEG00000014156)
Clown anemonefish	MODERN SPECIES	790														UNC5C (ENSAOCG00000021129)	glis3 (ENSAOCG00000021022)	rfx3 (ENSAOCG00000021007) ##22	smad4a (ENSAOCG00000020944)	BMP10 (ENSAOCG00000020890)	ARVCF (ENSAOCG00000020856)	ENSAOCG00000020845	slc22a13b (ENSAOCG00000002232)	slc22a13b (ENSAOCG00000020677)	ENSAOCG00000020610	csrnp1b (ENSAOCG00000020582)	ENSAOCG00000020564	GORASP1 (ENSAOCG00000020500)
Spiny chromis	MODERN SPECIES	37										apoda.1 (ENSAPOG00000010820)	opn4xa (ENSAPOG00000010751)	pdlim5b (ENSAPOG00000010737)	bmpr1bb (ENSAPOG00000010718)	UNC5C (ENSAPOG00000010638)	glis3 (ENSAPOG00000010551)	rfx3 (ENSAPOG00000010514) ##22	smad4a (ENSAPOG00000010474)	BMP10 (ENSAPOG00000010442)	ARVCF (ENSAPOG00000010422)	ENSAPOG00000010409	ENSAPOG00000010383	nup155 (ENSAPOG00000010371)	ENSAPOG00000010172	ENSAPOG00000009378	ENSAPOG00000009289	UHRF2 (ENSAPOG00000009269)	oaz1b (ENSAPOG00000001045)	ERMP1 (ENSAPOG00000009111)	RIC1 (ENSAPOG00000009018)	exosc2 (ENSAPOG00000008861)	ABL1 (ENSAPOG00000008719)
Bicolor damselfish	MODERN SPECIES	757															glis3 (ENSSPAG00000004451)	rfx3 (ENSSPAG00000004491) ##22	smad4a (ENSSPAG00000004597)	BMP10 (ENSSPAG00000004631)	ARVCF (ENSSPAG00000004656)	ENSSPAG00000004838	ENSSPAG00000004867	nup155 (ENSSPAG00000004883)	ENSSPAG00000005007	ENSSPAG00000005021	ENSSPAG00000005127	UHRF2 (ENSSPAG00000005157)	oaz1b (ENSSPAG00000005232)	ENSSPAG00000005261	ENSSPAG00000005273
Cichlidae	ANCESTRAL SPECIES	10	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Haplochromini	ANCESTRAL SPECIES		ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00800000124150	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Haplochromini_A	ANCESTRAL SPECIES	12	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
P. nyererei	MODERN SPECIES	358	GAL3ST1 (ENSPNYG00000008730)	ENSPNYG00000008675	srsf9 (ENSPNYG00000008644)	ENSPNYG00000008582	git2b (ENSPNYG00000008528)	ENSPNYG00000008489	FAM222A (ENSPNYG00000008477)	ENSPNYG00000008462	WDR70 (ENSPNYG00000008394)	gdnfa (ENSPNYG00000008369) ##15	opn4xa (ENSPNYG00000008343)	pdlim5b (ENSPNYG00000008318)	bmpr1bb (ENSPNYG00000008280)	UNC5C (ENSPNYG00000008247)	glis3 (ENSPNYG00000008203)	rfx3 (ENSPNYG00000008150) ##22	smad4a (ENSPNYG00000008130)	BMP10 (ENSPNYG00000008119)	ARVCF (ENSPNYG00000008095)	ENSPNYG00000008059	ENSPNYG00000008044	nup155 (ENSPNYG00000007870)	ENSPNYG00000007841	ENSPNYG00000007727	ENSPNYG00000007687	UHRF2 (ENSPNYG00000007607)	oaz1b (ENSPNYG00000007528)	ERMP1 (ENSPNYG00000007487)	RIC1 (ENSPNYG00000007422)	exosc2 (ENSPNYG00000007383)	ABL1 (ENSPNYG00000007350)
Haplochromini_B	ANCESTRAL SPECIES	4	ENSGT00390000014052	ENSGT00950000182923.C.b	ENSGT00390000006265.b.c	ENSGT00940000156839	ENSGT00940000156871.p	ENSGT00940000156383.b	ENSGT00940000155182.a	ENSGT00530000063811.B.b	ENSGT00390000015433	ENSGT00950000182993.A.b.e ##15	ENSGT01100000263502.B.a.b.a	ENSGT00940000155292.db.b.a	ENSGT00940000155919.b.b	ENSGT00950000182815.a.a.a.a.a.c	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000157435.a.b	ENSGT00940000156279.f	ENSGT00940000157027.n.b	ENSGT00940000158044.b	ENSGT00730000112225	ENSGT00390000016532	ENSGT00390000010427.c.s.a	ENSGT00390000010427.c.s.b	ENSGT00390000009531	ENSGT00390000011483	ENSGT00390000008296.b.b	ENSGT00940000166601	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000153596.B
Eastern happy	MODERN SPECIES	19	ENSACLG00000015718	srsf9 (ENSACLG00000015678)	ENSACLG00000015650	ENSACLG00000015487	git2b (ENSACLG00000015302)	ENSACLG00000015281	FAM222A (ENSACLG00000015267)	WDR70 (ENSACLG00000015123)	gdnfa (ENSACLG00000015113) ##15	opn4xa (ENSACLG00000015094)	pdlim5b (ENSACLG00000015010)	bmpr1bb (ENSACLG00000014953)	ENSACLG00000014947	UNC5C (ENSACLG00000014816)	glis3 (ENSACLG00000014654)	rfx3 (ENSACLG00000014557) ##22	smad4a (ENSACLG00000014529)	BMP10 (ENSACLG00000014520)	ARVCF (ENSACLG00000014514)	ENSACLG00000014347	ENSACLG00000014341	nup155 (ENSACLG00000014123)	ENSACLG00000014104	ENSACLG00000013956	MLANA (ENSACLG00000013936)	ENSACLG00000013855	UHRF2 (ENSACLG00000013761)	oaz1b (ENSACLG00000013736)	ERMP1 (ENSACLG00000013682)	ENSACLG00000013674	RIC1 (ENSACLG00000013629)
Zebra mbuna	MODERN SPECIES	1110	srsf9 (ENSMZEG00005018422)	ENSMZEG00005018428	git2b (ENSMZEG00005018442)	ENSMZEG00005018458	FAM222A (ENSMZEG00005018465)	WDR70 (ENSMZEG00005018480)	gdnfa (ENSMZEG00005018503) ##15	ENSMZEG00005018505	ENSMZEG00005018511	ENSMZEG00005018533	opn4xa (ENSMZEG00005018537)	pdlim5b (ENSMZEG00005018544)	bmpr1bb (ENSMZEG00005018554)	UNC5C (ENSMZEG00005018566)	glis3 (ENSMZEG00005018592)	rfx3 (ENSMZEG00005018598) ##22	smad4a (ENSMZEG00005018613)	BMP10 (ENSMZEG00005018620)	ARVCF (ENSMZEG00005018621)	ENSMZEG00005018625	ENSMZEG00005018627	nup155 (ENSMZEG00005018634)	ENSMZEG00005018651	ENSMZEG00005018663	MLANA (ENSMZEG00005018684)	KIAA2026 (ENSMZEG00005018687)	UHRF2 (ENSMZEG00005018695)	oaz1b (ENSMZEG00005018701)	ERMP1 (ENSMZEG00005018708)	RIC1 (ENSMZEG00005018724)	exosc2 (ENSMZEG00005018737)
Burton s mouthbrooder	MODERN SPECIES	584											opn4xa (ENSHBUG00000021264)	pdlim5b (ENSHBUG00000021350)	bmpr1bb (ENSHBUG00000021405)	UNC5C (ENSHBUG00000021530)	glis3 (ENSHBUG00000021547)	rfx3 (ENSHBUG00000021638) ##22	smad4a (ENSHBUG00000021658)	BMP10 (ENSHBUG00000021667)	ARVCF (ENSHBUG00000021682)	ENSHBUG00000021723	ENSHBUG00000021735	nup155 (ENSHBUG00000021934)	ENSHBUG00000021949	ENSHBUG00000022058	ENSHBUG00000022069	UHRF2 (ENSHBUG00000022178)	oaz1b (ENSHBUG00000022196)	ERMP1 (ENSHBUG00000022308)	RIC1 (ENSHBUG00000022396)	exosc2 (ENSHBUG00000022437)	ABL1 (ENSHBUG00000022516)
Lyretail cichlid	MODERN SPECIES	304	GAL3ST1 (ENSNBRG00000003803)	ENSNBRG00000003828	srsf9 (ENSNBRG00000003888)	ENSNBRG00000003914	git2b (ENSNBRG00000003985)	ENSNBRG00000004040	FAM222A (ENSNBRG00000004059)	ENSNBRG00000004113	WDR70 (ENSNBRG00000004265)	gdnfa (ENSNBRG00000004334) ##15	opn4xa (ENSNBRG00000004370)	pdlim5b (ENSNBRG00000004476)	bmpr1bb (ENSNBRG00000004491)	UNC5C (ENSNBRG00000004521)	glis3 (ENSNBRG00000004595)	rfx3 (ENSNBRG00000004632) ##22	smad4a (ENSNBRG00000004691)	BMP10 (ENSNBRG00000004734)	ARVCF (ENSNBRG00000004752)	ENSNBRG00000004787	ENSNBRG00000004824	nup155 (ENSNBRG00000004838)	ENSNBRG00000004934	ENSNBRG00000004956	ENSNBRG00000005203	UHRF2 (ENSNBRG00000005231)	oaz1b (ENSNBRG00000005283)	ERMP1 (ENSNBRG00000005304)	RIC1 (ENSNBRG00000005373)	exosc2 (ENSNBRG00000005453)	ABL1 (ENSNBRG00000005494)
Nile tilapia	MODERN SPECIES	19	uqcr10 (ENSONIG00000033772)	GAL3ST1 (ENSONIG00000013968)	ENSONIG00000013969	ENSONIG00000013976	srsf9 (ENSONIG00000013974)	git2b (ENSONIG00000013982)	ENSONIG00000041587	FAM222A (ENSONIG00000040639)	WDR70 (ENSONIG00000014001)	gdnfa (ENSONIG00000031992) ##15	opn4xa (ENSONIG00000014009)	pdlim5b (ENSONIG00000014011)	bmpr1bb (ENSONIG00000014017)	UNC5C (ENSONIG00000014022)	glis3 (ENSONIG00000014033)	rfx3 (ENSONIG00000014034) ##22	smad4a (ENSONIG00000014036)	BMP10 (ENSONIG00000039707)	ARVCF (ENSONIG00000014044)	ENSONIG00000014045	ENSONIG00000020400	nup155 (ENSONIG00000014046)	ENSONIG00000014053	ENSONIG00000014060	UHRF2 (ENSONIG00000014061)	oaz1b (ENSONIG00000014076)	ERMP1 (ENSONIG00000014077)	RIC1 (ENSONIG00000014080)	exosc2 (ENSONIG00000014086)	ABL1 (ENSONIG00000014093)	rab14 (ENSONIG00000036893)
Midas cichlid	MODERN SPECIES	75											opn4xa (ENSACIG00000018281)	pdlim5b (ENSACIG00000018322)	bmpr1bb (ENSACIG00000018459)	UNC5C (ENSACIG00000018481)	glis3 (ENSACIG00000018517)	rfx3 (ENSACIG00000018552) ##22	smad4a (ENSACIG00000018584)	ENSACIG00000018604	BMP10 (ENSACIG00000018609)	ARVCF (ENSACIG00000018628)	ENSACIG00000018765	ENSACIG00000018793	nup155 (ENSACIG00000018799)	ENSACIG00000018837	ENSACIG00000018846	ENSACIG00000018906	UHRF2 (ENSACIG00000018947)	oaz1b (ENSACIG00000018980)	ERMP1 (ENSACIG00000018992)	RIC1 (ENSACIG00000019017)	exosc2 (ENSACIG00000019054)
Tiger tail seahorse	MODERN SPECIES	143														UNC5C (ENSHCOG00000000496)	glis3 (ENSHCOG00000018717)	rfx3 (ENSHCOG00000018764) ##22	smad4a (ENSHCOG00000018817)	ENSHCOG00000018848	ENSHCOG00000018853	nup155 (ENSHCOG00000018914)	ENSHCOG00000018930	ENSHCOG00000018934	ENSHCOG00000018966	MLANA (ENSHCOG00000018979)	ENSHCOG00000018984	UHRF2 (ENSHCOG00000018996)	oaz1b (ENSHCOG00000019012)	ERMP1 (ENSHCOG00000019022)	RIC1 (ENSHCOG00000019095)	exosc2 (ENSHCOG00000019130)	ABL1 (ENSHCOG00000019180)
Pinecone sodierfish	MODERN SPECIES	3	GAL3ST1 (ENSMMDG00005019908)	ENSMMDG00005019818	srsf9 (ENSMMDG00005019812)	ENSMMDG00005019797	git2b (ENSMMDG00005019183)	ENSMMDG00005019142	FAM222A (ENSMMDG00005019140)	ENSMMDG00005019135	WDR70 (ENSMMDG00005017877)	gdnfa (ENSMMDG00005017829) ##15	opn4xa (ENSMMDG00005017813)	pdlim5b (ENSMMDG00005017642)	bmpr1bb (ENSMMDG00005016697)	UNC5C (ENSMMDG00005016667)	glis3 (ENSMMDG00005016661)	rfx3 (ENSMMDG00005015981) ##22	smad4a (ENSMMDG00005015880)	BMP10 (ENSMMDG00005015878)	syk (ENSMMDG00005015877)	ENSMMDG00005015865	macir (ENSMMDG00005015859)	PAM (ENSMMDG00005015822)	chd1 (ENSMMDG00005013821)	reep5 (ENSMMDG00005013766)	YTHDC2 (ENSMMDG00005013738)	ENSMMDG00005013729	ENSMMDG00005013728	ENSMMDG00005013720	hmgcs1 (ENSMMDG00005013714)	FASTKD5 (ENSMMDG00005013712)	tln1 (ENSMMDG00005007347)
Osteoglossiformes	ANCESTRAL SPECIES	209														ENSGT00950000182869.e.b.g.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000156133.a.b	ENSGT00940000156488.a.a.g	ENSGT01030000234989	ENSGT00990000203805	ENSGT00390000017134.b	ENSGT00390000015813.b.b	ENSGT01020000230438.C.f.b	ENSGT00940000159434.p	ENSGT00390000014107.a.a	ENSGT00390000009387	ENSGT00940000163130	ENSGT00390000017655.k	ENSGT00940000162972	ENSGT00940000154575.a.b	ENSGT00940000158903.mb
P. kingsleyae	MODERN SPECIES	9	xpo7 (ENSPKIG00000018175)	pbdc1 (ENSPKIG00000018127)	dmtn (ENSPKIG00000018115)	adam9 (ENSPKIG00000018077)	ENSPKIG00000018049	GNAZ (ENSPKIG00000018034)	sppl3 (ENSPKIG00000018000)	sdf2l1 (ENSPKIG00000017963)	ube2l3b (ENSPKIG00000017942)	hic2 (ENSPKIG00000017929)	pi4kaa (ENSPKIG00000017878)	ENSPKIG00000017835	SLC25A1 (ENSPKIG00000017818)	zgc:56235 (ENSPKIG00000017776)	glis3 (ENSPKIG00000017730)	rfx3 (ENSPKIG00000017641) ##22	FOXN4 (ENSPKIG00000017607)	UNG (ENSPKIG00000017575)	SSH1 (ENSPKIG00000017517)	ENSPKIG00000017407	ENSPKIG00000017354	tmem119b (ENSPKIG00000017340)	iscub (ENSPKIG00000017322)	CMKLR1 (ENSPKIG00000017305)	wscd2 (ENSPKIG00000017279)	rnf185 (ENSPKIG00000017239)	ENSPKIG00000017186	ess2 (ENSPKIG00000017140)	dgcr2 (ENSPKIG00000017103)	car15 (ENSPKIG00000017080)	ENSPKIG00000017068
Asian bonytongue	MODERN SPECIES	21	nt5c2l1 (ENSSFOG00015016324)	RNF208 (ENSSFOG00015028895)	slc5a1 (ENSSFOG00015016283)	ywhah (ENSSFOG00015016274)	DEPDC5 (ENSSFOG00015016202)	rab36 (ENSSFOG00015016156)	GNAZ (ENSSFOG00015028594)	sppl3 (ENSSFOG00015031011)	sdf2l1 (ENSSFOG00015032321)	UBE2L5 (ENSSFOG00015016080)	hic2 (ENSSFOG00015016070)	pi4kaa (ENSSFOG00015015982)	SLC25A1 (ENSSFOG00015015942)	zgc:56235 (ENSSFOG00015015933)	glis3 (ENSSFOG00015015922)	rfx3 (ENSSFOG00015029856) ##22	FOXN4 (ENSSFOG00015015852)	ENSSFOG00015015832	SSH1 (ENSSFOG00015015810)	ENSSFOG00015015764	ENSSFOG00015015743	ENSSFOG00015026039	iscub (ENSSFOG00015026978)	CMKLR1 (ENSSFOG00015015689)	wscd2 (ENSSFOG00015015648)	rnf185 (ENSSFOG00015015627)	PIK3IP1 (ENSSFOG00015015561)	ess2 (ENSSFOG00015015525)	TSSK1B (ENSSFOG00015015442)	dgcr2 (ENSSFOG00015015397)	car15 (ENSSFOG00015015378)
Spotted gar	MODERN SPECIES	658	MEX3C (ENSLOCG00000012879)	CCSER1 (ENSLOCG00000012882)	ENSLOCG00000012889	grid2 (ENSLOCG00000012893)	atoh1a (ENSLOCG00000017552)	smarcad1a (ENSLOCG00000012909)	HPGDS (ENSLOCG00000012916)	opn4xa (ENSLOCG00000012921)	pdlim5b (ENSLOCG00000012933)	bmpr1bb (ENSLOCG00000012942)	UNC5C (ENSLOCG00000012954)	ENSLOCG00000012957	ENSLOCG00000012961	ENSLOCG00000012963	glis3 (ENSLOCG00000012972)	rfx3 (ENSLOCG00000012975) ##22	ENSLOCG00000012978	ENSLOCG00000012980	ENSLOCG00000012985	ENSLOCG00000012988	ENSLOCG00000012992	ENSLOCG00000013000	ENSLOCG00000013002	ENSLOCG00000013009	gal3st4 (ENSLOCG00000013014)	gal3st4 (ENSLOCG00000013024)	trappc14 (ENSLOCG00000013030)	zanl (ENSLOCG00000013041)	ENSLOCG00000013053	COPS6 (ENSLOCG00000013063)	and3 (ENSLOCG00000013069)
Sarcopterygii	ANCESTRAL SPECIES	81	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489
Tetrapoda	ANCESTRAL SPECIES	2	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000156639
Amniota	ANCESTRAL SPECIES	4	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250
Mammalia	ANCESTRAL SPECIES	24	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Theria	ANCESTRAL SPECIES	30	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907.a	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477	ENSGT00940000161466	ENSGT00940000158074	ENSGT00390000009084
Marsupialia_b	ANCESTRAL SPECIES	11	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907.a	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884	ENSGT00960000187477	ENSGT00940000161466	ENSGT00940000158074	ENSGT00390000009084
Diprotodontia	ANCESTRAL SPECIES	19	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907.a	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00960000187477	ENSGT00940000161884	ENSGT00940000161466	ENSGT00940000158074	ENSGT00390000009084
Diprotodontia_a	ANCESTRAL SPECIES	21	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907.a	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757.w	ENSGT00940000155289.C.a.a.b	ENSGT00390000011149	ENSGT00940000153882.a.b.b.a	ENSGT00410000025739.c.a	ENSGT00550000074873	ENSGT00390000012605	ENSGT00390000000306	ENSGT00940000162728	ENSGT00940000161884.b	ENSGT00940000161466	ENSGT00940000158074	ENSGT00390000009084	ENSGT00510000049182
koala	MODERN SPECIES	113	ENSPCIG00000000358	ENSPCIG00000000288	PLGRKT (ENSPCIG00000008213)	ENSPCIG00000034412	ENSPCIG00000036019	JAK2 (ENSPCIG00000000252)	RCL1 (ENSPCIG00000000188)	ENSPCIG00000000144	CDC37L1 (ENSPCIG00000000083)	ENSPCIG00000035241	ENSPCIG00000025428	ENSPCIG00000025425	SLC1A1 (ENSPCIG00000001803)	ENSPCIG00000032109	ENSPCIG00000024086	RFX3 (ENSPCIG00000024087) ##22	ENSPCIG00000030606	PUM3 (ENSPCIG00000030598)	ENSPCIG00000030552	ENSPCIG00000030550	NTN3 (ENSPCIG00000030549)	TBC1D24 (ENSPCIG00000030548)	AMDHD2 (ENSPCIG00000030546)	ENSPCIG00000030545	ENSPCIG00000031802	ENSPCIG00000030542	ENSPCIG00000030541	ENSPCIG00000030632	ENSPCIG00000032703	ENSPCIG00000032081	ENSPCIG00000020457
Common wonbat	MODERN SPECIES	1009	UHRF2 (ENSVURG00010006652)	KIAA2026 (ENSVURG00010006687)	MLANA (ENSVURG00010006707)	ERMP1 (ENSVURG00010006720)	RIC1 (ENSVURG00010006750)	CD274 (ENSVURG00010006794)	PLGRKT (ENSVURG00010006799)	JAK2 (ENSVURG00010006805)	RCL1 (ENSVURG00010006818)	AK3 (ENSVURG00010006826)	CDC37L1 (ENSVURG00010006832)	PLPP6 (ENSVURG00010006844)	ENSVURG00010006853	SLC1A1 (ENSVURG00010006864)	GLIS3 (ENSVURG00010006895)	RFX3 (ENSVURG00010006911) ##22	ENSVURG00010006948	ENSVURG00010006968	ENSVURG00010006992	NTN3 (ENSVURG00010007004)	TBC1D24 (ENSVURG00010007018)	ENSVURG00010007067	AMDHD2 (ENSVURG00010007093)	ENSVURG00010007136	ENSVURG00010007142	ZNF316 (ENSVURG00010007148)	ZKSCAN2 (ENSVURG00010007162)	ENSVURG00010007173	ENSVURG00010007181	KDM8 (ENSVURG00010007200)	ENSVURG00010007211
Wallaby	MODERN SPECIES	349																ENSMEUG00000011061 ##22
Tasmanian devil	MODERN SPECIES		RIC1 (ENSSHAG00000000924)	ENSSHAG00000004176	CD274 (ENSSHAG00000002682)	PLGRKT (ENSSHAG00000001757)	ENSSHAG00000015262	JAK2 (ENSSHAG00000014900)	RCL1 (ENSSHAG00000014086)	ENSSHAG00000029924	AK3 (ENSSHAG00000028635)	CDC37L1 (ENSSHAG00000013393)	ENSSHAG00000012947	PLPP6 (ENSSHAG00000026797)	SLC1A1 (ENSSHAG00000012371)	GLIS3 (ENSSHAG00000030971)	ENSSHAG00000028825	RFX3 (ENSSHAG00000003775) ##22	ENSSHAG00000002395	ENSSHAG00000003730	ENSSHAG00000000892	ENSSHAG00000031126	ENSSHAG00000025501	ENSSHAG00000014430	ATP6V0C (ENSSHAG00000014251)	ENSSHAG00000027414	ENSSHAG00000013445	ENSSHAG00000013237	ENSSHAG00000023033	ENSSHAG00000022299	KDM8 (ENSSHAG00000010301)	NSMCE1 (ENSSHAG00000029711)	ENSSHAG00000022047
Opossum	MODERN SPECIES	5	PLGRKT (ENSMODG00000015353)	RFLB (ENSMODG00000048062)	JAK2 (ENSMODG00000015373)	RCL1 (ENSMODG00000015377)	ENSMODG00000029481	AK3 (ENSMODG00000042741)	CDC37L1 (ENSMODG00000015385)	ENSMODG00000022953	ENSMODG00000051594	ENSMODG00000025440	SLC1A1 (ENSMODG00000015399)	ENSMODG00000045366	GLIS3 (ENSMODG00000015403)	ENSMODG00000044455	ENSMODG00000039449	RFX3 (ENSMODG00000015410) ##22	ENSMODG00000015412	PUM3 (ENSMODG00000015417)	PBK (ENSMODG00000015425)	ENSMODG00000015420	ENSMODG00000015432	NTN3 (ENSMODG00000015434)	TBC1D24 (ENSMODG00000015436)	ENSMODG00000042495	AMDHD2 (ENSMODG00000015443)	ENSMODG00000028791	ZNF316 (ENSMODG00000015447)	ENSMODG00000043808	ZKSCAN2 (ENSMODG00000015452)	ENSMODG00000029272	ENSMODG00000015454
Eutheria	ANCESTRAL SPECIES	7	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Boreoeutheria	ANCESTRAL SPECIES	10	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Euarchontoglires	ANCESTRAL SPECIES	10	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Primates	ANCESTRAL SPECIES	9	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Haplorrhini	ANCESTRAL SPECIES	9	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Simiiformes	ANCESTRAL SPECIES	11	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Platyrrhini	ANCESTRAL SPECIES	8	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523.r	ENSGT00940000163353	ENSGT00940000158126
Cebidae	ANCESTRAL SPECIES	7	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523.r	ENSGT00940000163353	ENSGT00940000158126
Cebidae_a	ANCESTRAL SPECIES	92							ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00530000063402.a.h	ENSGT00390000004049.ab	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523.r
Capuchin	MODERN SPECIES	227							INSL6 (ENSCCAG00000028704)	JAK2 (ENSCCAG00000022686)	RCL1 (ENSCCAG00000033505)	AK3 (ENSCCAG00000024553)	CDC37L1 (ENSCCAG00000036002)	PLPP6 (ENSCCAG00000017149)	SPATA6L (ENSCCAG00000019855)	SLC1A1 (ENSCCAG00000024828)	GLIS3 (ENSCCAG00000025272)	RFX3 (ENSCCAG00000030352) ##22	ENSCCAG00000032475	ENSCCAG00000034048	ENSCCAG00000023250	PUM3 (ENSCCAG00000032650)	KCNV2 (ENSCCAG00000006608)	VLDLR (ENSCCAG00000034631)	ENSCCAG00000024458	ENSCCAG00000032291	SMARCA2 (ENSCCAG00000030636)
Bolivian squirrel monkey	MODERN SPECIES	118						RCL1 (ENSSBOG00000026369)	ENSSBOG00000018606	AK3 (ENSSBOG00000002841)	CDC37L1 (ENSSBOG00000032737)	PLPP6 (ENSSBOG00000019035)	ENSSBOG00000022998	SPATA6L (ENSSBOG00000026985)	SLC1A1 (ENSSBOG00000032684)	ENSSBOG00000019687	GLIS3 (ENSSBOG00000032997)	RFX3 (ENSSBOG00000031103) ##22	ENSSBOG00000016907	ENSSBOG00000026932	ENSSBOG00000022458	PUM3 (ENSSBOG00000028066)	KCNV2 (ENSSBOG00000023504)	VLDLR (ENSSBOG00000031091)	ENSSBOG00000020747	SMARCA2 (ENSSBOG00000034827)	ENSSBOG00000019886	DMRT2 (ENSSBOG00000010665)	DMRT3 (ENSSBOG00000027585)	DMRT1 (ENSSBOG00000027694)	KANK1 (ENSSBOG00000032525)	DOCK8 (ENSSBOG00000020599)	ENSSBOG00000032210
Marmoset	MODERN SPECIES		CD274 (ENSCJAG00000011388)	PLGRKT (ENSCJAG00000011374)	ENSCJAG00000038187	INSL6 (ENSCJAG00000011358)	ENSCJAG00000076577	JAK2 (ENSCJAG00000011228)	RCL1 (ENSCJAG00000011202)	ENSCJAG00000059464	CDC37L1 (ENSCJAG00000011155)	AK3 (ENSCJAG00000011188)	PLPP6 (ENSCJAG00000063898)	SPATA6L (ENSCJAG00000011136)	SLC1A1 (ENSCJAG00000011113)	ENSCJAG00000073768 ##35	GLIS3 (ENSCJAG00000011083)	RFX3 (ENSCJAG00000010996) ##22	PUM3 (ENSCJAG00000010917)	KCNV2 (ENSCJAG00000042809)	VLDLR (ENSCJAG00000010772)	ENSCJAG00000042690	SMARCA2 (ENSCJAG00000010710)	DMRT2 (ENSCJAG00000010690)	DMRT3 (ENSCJAG00000063670)	ENSCJAG00000084547	KANK1 (ENSCJAG00000010595)	DOCK8 (ENSCJAG00000010485)	ENSCJAG00000078334	ENSCJAG00000054365	ENSCJAG00000010423	ENSCJAG00000040149	ENSCJAG00000073324
Mas night monkey	MODERN SPECIES	599	ENSANAG00000025398	PDCD1LG2 (ENSANAG00000020809)	ENSANAG00000019149	CD274 (ENSANAG00000028618)	PLGRKT (ENSANAG00000022854)	ENSANAG00000023659	JAK2 (ENSANAG00000027034)	RCL1 (ENSANAG00000037372)	AK3 (ENSANAG00000037726)	CDC37L1 (ENSANAG00000028426)	ENSANAG00000029767	SPATA6L (ENSANAG00000030395)	PLPP6 (ENSANAG00000019076)	SLC1A1 (ENSANAG00000032125)	GLIS3 (ENSANAG00000038022)	RFX3 (ENSANAG00000038145) ##22	ENSANAG00000036903	PUM3 (ENSANAG00000024520)	KCNV2 (ENSANAG00000035114)	VLDLR (ENSANAG00000020851)	ENSANAG00000029407	SMARCA2 (ENSANAG00000026498)	ENSANAG00000018592	DMRT2 (ENSANAG00000020591)	DMRT3 (ENSANAG00000027840)	DMRT1 (ENSANAG00000030765)
Catarrhini	ANCESTRAL SPECIES	13	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353
Hominoidea	ANCESTRAL SPECIES	23	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353
Hominidae	ANCESTRAL SPECIES	10	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	10	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353.a.a.b
Gorilla	MODERN SPECIES	22	CD274 (ENSGGOG00000008540)	PLGRKT (ENSGGOG00000004113)	RLN1 (ENSGGOG00000005891)	RLN2 (ENSGGOG00000026430)	INSL4 (ENSGGOG00000036799)	INSL6 (ENSGGOG00000008771)	JAK2 (ENSGGOG00000007243)	ENSGGOG00000022573	RCL1 (ENSGGOG00000015041)	AK3 (ENSGGOG00000028122)	CDC37L1 (ENSGGOG00000006889)	SPATA6L (ENSGGOG00000034964)	PLPP6 (ENSGGOG00000040149)	SLC1A1 (ENSGGOG00000000262)	GLIS3 (ENSGGOG00000038970)	RFX3 (ENSGGOG00000003805) ##22	ENSGGOG00000022372	PUM3 (ENSGGOG00000006143)	KCNV2 (ENSGGOG00000000231)	VLDLR (ENSGGOG00000001362)	ENSGGOG00000038609	SMARCA2 (ENSGGOG00000000513)	ENSGGOG00000039224	DMRT2 (ENSGGOG00000025101)	DMRT3 (ENSGGOG00000013303)	DMRT1 (ENSGGOG00000013298)	KANK1 (ENSGGOG00000005466)	DOCK8 (ENSGGOG00000008791)	ENSGGOG00000015757	ENSGGOG00000022867	FOXD4 (ENSGGOG00000003673)
Homo/Pan group	ANCESTRAL SPECIES	27	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750
Pan	ANCESTRAL SPECIES	26	ENSGT00390000000375	ENSGT00940000154434.a.a.f	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750
Bonobo	MODERN SPECIES	22	CD274 (ENSPPAG00000034663)	ENSPPAG00000031342	PLGRKT (ENSPPAG00000030588)	RLN1 (ENSPPAG00000029999)	RLN2 (ENSPPAG00000025312)	INSL6 (ENSPPAG00000002535)	ENSPPAG00000038776	JAK2 (ENSPPAG00000019000)	RCL1 (ENSPPAG00000037958)	AK3 (ENSPPAG00000033568)	CDC37L1 (ENSPPAG00000038614)	SPATA6L (ENSPPAG00000010175)	SLC1A1 (ENSPPAG00000027502)	GLIS3 (ENSPPAG00000043097)	ENSPPAG00000011368	RFX3 (ENSPPAG00000039978) ##22	ENSPPAG00000029157	PUM3 (ENSPPAG00000041337)	KCNV2 (ENSPPAG00000040791)	VLDLR (ENSPPAG00000029389)	ENSPPAG00000042393	ENSPPAG00000042332	SMARCA2 (ENSPPAG00000038717)	DMRT2 (ENSPPAG00000033739)	ENSPPAG00000027768	DMRT1 (ENSPPAG00000036830)	DOCK8 (ENSPPAG00000041152)	ENSPPAG00000035014
Chimpanzee	MODERN SPECIES	22	PLGRKT (ENSPTRG00000020753)	RLN1 (ENSPTRG00000050353)	RLN2 (ENSPTRG00000045482)	INSL4 (ENSPTRG00000020750)	INSL6 (ENSPTRG00000020748)	ENSPTRG00000052532	JAK2 (ENSPTRG00000020744)	RCL1 (ENSPTRG00000020743)	AK3 (ENSPTRG00000020742)	CDC37L1 (ENSPTRG00000020741)	PLPP6 (ENSPTRG00000044921)	SPATA6L (ENSPTRG00000020740)	SLC1A1 (ENSPTRG00000020739)	GLIS3 (ENSPTRG00000020738)	ENSPTRG00000050873	RFX3 (ENSPTRG00000048670) ##22	ENSPTRG00000046907	PUM3 (ENSPTRG00000020735)	KCNV2 (ENSPTRG00000020734)	VLDLR (ENSPTRG00000020732)	ENSPTRG00000047815	ENSPTRG00000052144	SMARCA2 (ENSPTRG00000051168)	DMRT2 (ENSPTRG00000020730)	DMRT3 (ENSPTRG00000020729)	DMRT1 (ENSPTRG00000020728)	KANK1 (ENSPTRG00000041819)	ENSPTRG00000044534	DOCK8 (ENSPTRG00000020725)	ENSPTRG00000052275	ENSPTRG00000020994
Human	MODERN SPECIES	21	PDCD1LG2 (ENSG00000197646)	CD274 (ENSG00000120217)	PLGRKT (ENSG00000107020)	RLN1 (ENSG00000107018)	RLN2 (ENSG00000107014)	INSL4 (ENSG00000120211)	INSL6 (ENSG00000120210)	JAK2 (ENSG00000096968)	RCL1 (ENSG00000120158)	AK3 (ENSG00000147853)	CDC37L1 (ENSG00000106993)	PLPP6 (ENSG00000205808)	SPATA6L (ENSG00000106686)	SLC1A1 (ENSG00000106688)	GLIS3 (ENSG00000107249)	RFX3 (ENSG00000080298) ##22	PUM3 (ENSG00000080608)	KCNV2 (ENSG00000168263)	VLDLR (ENSG00000147852)	SMARCA2 (ENSG00000080503)	DMRT2 (ENSG00000173253)	DMRT3 (ENSG00000064218)	DMRT1 (ENSG00000137090)	KANK1 (ENSG00000107104)	DOCK8 (ENSG00000107099)	ZNG1A (ENSG00000172785)	FOXD4 (ENSG00000170122)	WASHC1 (ENSG00000181404)
Orangutan	MODERN SPECIES	22	PDCD1LG2 (ENSPPYG00000019236)	CD274 (ENSPPYG00000019237)	PLGRKT (ENSPPYG00000019238)	RLN1 (ENSPPYG00000019239)	RLN2 (ENSPPYG00000040733)	INSL4 (ENSPPYG00000019240)	INSL6 (ENSPPYG00000019242)	JAK2 (ENSPPYG00000019243)	RCL1 (ENSPPYG00000019244)	AK3 (ENSPPYG00000019245)	CDC37L1 (ENSPPYG00000019246)	SPATA6L (ENSPPYG00000019247)	PLPP6 (ENSPPYG00000019248)	SLC1A1 (ENSPPYG00000019249)	GLIS3 (ENSPPYG00000019250)	RFX3 (ENSPPYG00000019253) ##22	ENSPPYG00000019254	PUM3 (ENSPPYG00000019255)	KCNV2 (ENSPPYG00000019256)	VLDLR (ENSPPYG00000019257)	ENSPPYG00000041078	SMARCA2 (ENSPPYG00000019258)	DMRT2 (ENSPPYG00000035747)	DMRT3 (ENSPPYG00000019260)	DMRT1 (ENSPPYG00000019261)	KANK1 (ENSPPYG00000019262)	DOCK8 (ENSPPYG00000019264)	ENSPPYG00000030930	ZNG1A (ENSPPYG00000019265)	ENSPPYG00000041038	PGM5 (ENSPPYG00000019268)
Gibbon	MODERN SPECIES	10	RLN1 (ENSNLEG00000008986)	RLN2 (ENSNLEG00000008980)	INSL4 (ENSNLEG00000008978)	INSL6 (ENSNLEG00000008974)	ENSNLEG00000027963	JAK2 (ENSNLEG00000008897)	RCL1 (ENSNLEG00000008891)	AK3 (ENSNLEG00000008885)	CDC37L1 (ENSNLEG00000008879)	ENSNLEG00000028049	SPATA6L (ENSNLEG00000008860)	SLC1A1 (ENSNLEG00000031411)	ENSNLEG00000035119	ENSNLEG00000034817	ENSNLEG00000028743	RFX3 (ENSNLEG00000008785) ##22	ENSNLEG00000029981	PUM3 (ENSNLEG00000008712)	KCNV2 (ENSNLEG00000008701)	VLDLR (ENSNLEG00000008596)	ENSNLEG00000008695	ENSNLEG00000029055	SMARCA2 (ENSNLEG00000008575)	DMRT2 (ENSNLEG00000008564)	DMRT3 (ENSNLEG00000008556)	DMRT1 (ENSNLEG00000008544)	ENSNLEG00000018709	KANK1 (ENSNLEG00000008510)	DOCK8 (ENSNLEG00000008451)	ENSNLEG00000028331	ENSNLEG00000008270
Cercopithecidae	ANCESTRAL SPECIES	9	ENSGT00730000111317.d	ENSGT00390000000375	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523
Cercopithecinae	ANCESTRAL SPECIES	12	ENSGT00730000111317.d	ENSGT00390000000375	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523
Cercopithecinae_a	ANCESTRAL SPECIES	12	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523
Macaca	ANCESTRAL SPECIES	10	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523
Macaca_a	ANCESTRAL SPECIES	10	ENSGT00940000161430	ENSGT00390000000375	ENSGT00990000207287	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00910000146995	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT01100000264112.b.a	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00390000010770.r	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Crab-eating macaque	MODERN SPECIES	6	ENSMFAG00000062108	ENSMFAG00000038755	RLN2 (ENSMFAG00000060189)	INSL4 (ENSMFAG00000050840)	INSL6 (ENSMFAG00000027620)	ENSMFAG00000054197	JAK2 (ENSMFAG00000003627)	RCL1 (ENSMFAG00000037906)	ENSMFAG00000049440	AK3 (ENSMFAG00000041698)	CDC37L1 (ENSMFAG00000000879)	SPATA6L (ENSMFAG00000032285)	SLC1A1 (ENSMFAG00000038163)	ENSMFAG00000030908	ENSMFAG00000049557	RFX3 (ENSMFAG00000000237) ##22	ENSMFAG00000049201	PUM3 (ENSMFAG00000001430)	KCNV2 (ENSMFAG00000055892)	VLDLR (ENSMFAG00000032374)	ENSMFAG00000048099	ENSMFAG00000003814	ENSMFAG00000056188	ENSMFAG00000058821	DMRT2 (ENSMFAG00000040812)	DMRT3 (ENSMFAG00000045391)	ENSMFAG00000060255	KANK1 (ENSMFAG00000036947)	ENSMFAG00000047680	DOCK8 (ENSMFAG00000008069)	ENSMFAG00000045857
Rhesus	MODERN SPECIES	6	PLGRKT (ENSMMUG00000006197)	CD274 (ENSMMUG00000012235)	ENSMMUG00000060737	ENSMMUG00000057739	RLN2 (ENSMMUG00000047971)	INSL4 (ENSMMUG00000058221)	INSL6 (ENSMMUG00000065127)	JAK2 (ENSMMUG00000014558)	RCL1 (ENSMMUG00000057331)	AK3 (ENSMMUG00000000143)	CDC37L1 (ENSMMUG00000000141)	SPATA6L (ENSMMUG00000000136)	PLPP6 (ENSMMUG00000059411)	SLC1A1 (ENSMMUG00000000135)	GLIS3 (ENSMMUG00000057568)	RFX3 (ENSMMUG00000000802) ##22	PUM3 (ENSMMUG00000002362)	KCNV2 (ENSMMUG00000060949)	VLDLR (ENSMMUG00000015093)	SMARCA2 (ENSMMUG00000015279)	ENSMMUG00000051059	DMRT2 (ENSMMUG00000014844)	DMRT3 (ENSMMUG00000044083)	ENSMMUG00000061012	KANK1 (ENSMMUG00000019862)	ENSMMUG00000064601	DOCK8 (ENSMMUG00000016976)	ENSMMUG00000058086	ENSMMUG00000050562	ZNG1A (ENSMMUG00000016193)	FOXD4L1 (ENSMMUG00000023182)
Pig-tailed macaque	MODERN SPECIES	182	ENSMNEG00000039597	RLN2 (ENSMNEG00000045554)	INSL4 (ENSMNEG00000038309)	INSL6 (ENSMNEG00000011366)	ENSMNEG00000032986	JAK2 (ENSMNEG00000031180)	RCL1 (ENSMNEG00000012288)	AK3 (ENSMNEG00000041876)	CDC37L1 (ENSMNEG00000030663)	PLPP6 (ENSMNEG00000001828)	SPATA6L (ENSMNEG00000044422)	SLC1A1 (ENSMNEG00000029913)	GLIS3 (ENSMNEG00000032738)	ENSMNEG00000040313	ENSMNEG00000042708	RFX3 (ENSMNEG00000038188) ##22	ENSMNEG00000032248	PUM3 (ENSMNEG00000035288)	KCNV2 (ENSMNEG00000012723)	VLDLR (ENSMNEG00000040863)	ENSMNEG00000044919	ENSMNEG00000040152	ENSMNEG00000028744	SMARCA2 (ENSMNEG00000041069)	DMRT2 (ENSMNEG00000033851)	DMRT3 (ENSMNEG00000035240)	DMRT1 (ENSMNEG00000036006)	KANK1 (ENSMNEG00000029060)	DOCK8 (ENSMNEG00000042769)	ENSMNEG00000040201	ENSMNEG00000005621
Cercopithecinae_b	ANCESTRAL SPECIES	7	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353
Olive baboon	MODERN SPECIES	4	CD274 (ENSPANG00000025169)	PLGRKT (ENSPANG00000025170)	ENSPANG00000023574	RLN2 (ENSPANG00000040000)	INSL4 (ENSPANG00000051326)	INSL6 (ENSPANG00000025144)	ENSPANG00000041678	JAK2 (ENSPANG00000025145)	RCL1 (ENSPANG00000025151)	AK3 (ENSPANG00000025152)	CDC37L1 (ENSPANG00000025153)	SPATA6L (ENSPANG00000025154)	SLC1A1 (ENSPANG00000025156)	GLIS3 (ENSPANG00000025157)	ENSPANG00000046940	RFX3 (ENSPANG00000025143) ##22	PUM3 (ENSPANG00000025118)	KCNV2 (ENSPANG00000025119)	VLDLR (ENSPANG00000025120)	ENSPANG00000042712	SMARCA2 (ENSPANG00000025121)	DMRT2 (ENSPANG00000025122)	DMRT3 (ENSPANG00000025123)	DMRT1 (ENSPANG00000025124)	KANK1 (ENSPANG00000025125)	DOCK8 (ENSPANG00000025117)	ENSPANG00000025116	FOXD4L1 (ENSPANG00000009332)	PGM5 (ENSPANG00000025114)	TMEM252 (ENSPANG00000025115)	ENSPANG00000042661
Cercopithecinae_d	ANCESTRAL SPECIES	34	ENSGT00940000154937.s.b	ENSGT00940000154434.a.a.e	ENSGT00940000154434.a.b	ENSGT00940000154434.b	ENSGT00940000153498.B.a.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT00940000159989.h	ENSGT01050000244879.a.a.b ##22	ENSGT00390000004049.cb	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154318.B.i.b	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353
Sooty mangabey	MODERN SPECIES	629	PLGRKT (ENSCATG00000038359)	ENSCATG00000019138	ENSCATG00000039027	RLN2 (ENSCATG00000039089)	INSL4 (ENSCATG00000040894)	INSL6 (ENSCATG00000029369)	JAK2 (ENSCATG00000024457)	RCL1 (ENSCATG00000034721)	AK3 (ENSCATG00000044404)	CDC37L1 (ENSCATG00000041223)	SPATA6L (ENSCATG00000043815)	PLPP6 (ENSCATG00000022355)	SLC1A1 (ENSCATG00000039114)	GLIS3 (ENSCATG00000038488)	ENSCATG00000030409	RFX3 (ENSCATG00000034639) ##22	ENSCATG00000029808	ENSCATG00000034924	PUM3 (ENSCATG00000024880)	KCNV2 (ENSCATG00000037552)	VLDLR (ENSCATG00000033177)	ENSCATG00000014393	ENSCATG00000034215	SMARCA2 (ENSCATG00000031470)	DMRT2 (ENSCATG00000032878)	DMRT3 (ENSCATG00000043509)	DMRT1 (ENSCATG00000043860)	KANK1 (ENSCATG00000042088)	DOCK8 (ENSCATG00000037251)	ENSCATG00000035578	ENSCATG00000043151
Drill	MODERN SPECIES	978	ENSMLEG00000035630	RLN2 (ENSMLEG00000039515)	INSL4 (ENSMLEG00000034989)	INSL6 (ENSMLEG00000042955)	ENSMLEG00000029968	JAK2 (ENSMLEG00000030814)	RCL1 (ENSMLEG00000043088)	AK3 (ENSMLEG00000032869)	CDC37L1 (ENSMLEG00000014590)	PLPP6 (ENSMLEG00000009133)	SPATA6L (ENSMLEG00000034746)	SLC1A1 (ENSMLEG00000042172)	GLIS3 (ENSMLEG00000040353)	ENSMLEG00000000662	ENSMLEG00000038681	RFX3 (ENSMLEG00000033860) ##22	ENSMLEG00000041919	PUM3 (ENSMLEG00000034820)	KCNV2 (ENSMLEG00000032357)	VLDLR (ENSMLEG00000032288)	ENSMLEG00000035182	ENSMLEG00000041221	SMARCA2 (ENSMLEG00000027418)
Vervet Monkey	MODERN SPECIES	3	RIC1 (ENSCSAG00000008890)	PDCD1LG2 (ENSCSAG00000008883)	CD274 (ENSCSAG00000008879)	PLGRKT (ENSCSAG00000008877)	RLN2 (ENSCSAG00000008867)	INSL4 (ENSCSAG00000008859)	INSL6 (ENSCSAG00000008855)	JAK2 (ENSCSAG00000008828)	RCL1 (ENSCSAG00000008811)	AK3 (ENSCSAG00000008801)	CDC37L1 (ENSCSAG00000008790)	SPATA6L (ENSCSAG00000008768)	PLPP6 (ENSCSAG00000018491)	SLC1A1 (ENSCSAG00000008723)	ENSCSAG00000008711	RFX3 (ENSCSAG00000008704) ##22	PUM3 (ENSCSAG00000008691)	KCNV2 (ENSCSAG00000008677)	VLDLR (ENSCSAG00000008671)	ENSCSAG00000008657	SMARCA2 (ENSCSAG00000008650)	DMRT2 (ENSCSAG00000008632)	DMRT3 (ENSCSAG00000008627)	DMRT1 (ENSCSAG00000008623)	KANK1 (ENSCSAG00000008611)	DOCK8 (ENSCSAG00000008591)	ENSCSAG00000018493	ENSCSAG00000008555	FOXD4L1 (ENSCSAG00000018495)	PGM5 (ENSCSAG00000008540)	TMEM252 (ENSCSAG00000008529)
Rhinopithecus	ANCESTRAL SPECIES	547								ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT00910000146957	ENSGT01050000244879.a.a.b ##22
Golden snub-nosed monkey	MODERN SPECIES	768								RCL1 (ENSRROG00000029781)	AK3 (ENSRROG00000036255)	CDC37L1 (ENSRROG00000036422)	SPATA6L (ENSRROG00000029293)	PLPP6 (ENSRROG00000013349)	SLC1A1 (ENSRROG00000032409)	GLIS3 (ENSRROG00000031282)	ENSRROG00000033006	RFX3 (ENSRROG00000033247) ##22
Black snub-nosed monkey	MODERN SPECIES	382																RFX3 (ENSRBIG00000032625) ##22
Tarsier	MODERN SPECIES	5396																RFX3 (ENSTSYG00000006974) ##22
Strepsirrhini	ANCESTRAL SPECIES	8	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896.q	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Lemuriformes	ANCESTRAL SPECIES	59	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896.q	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Mouse lemur	MODERN SPECIES	1	ENSMICG00000030745	RIC1 (ENSMICG00000016293)	PDCD1LG2 (ENSMICG00000004284)	CD274 (ENSMICG00000035171)	PLGRKT (ENSMICG00000031798)	ENSMICG00000043730	INSL6 (ENSMICG00000044551)	JAK2 (ENSMICG00000003885)	RCL1 (ENSMICG00000015562)	ENSMICG00000013112	CDC37L1 (ENSMICG00000017690)	SPATA6L (ENSMICG00000017688)	SLC1A1 (ENSMICG00000005171)	ENSMICG00000031277	ENSMICG00000041775	RFX3 (ENSMICG00000011871) ##22	ENSMICG00000029542	PUM3 (ENSMICG00000045916)	KCNV2 (ENSMICG00000005193)	VLDLR (ENSMICG00000005182)	ENSMICG00000005190	SMARCA2 (ENSMICG00000005162)	DMRT2 (ENSMICG00000010426)	DMRT3 (ENSMICG00000044854)	DMRT1 (ENSMICG00000010417)	KANK1 (ENSMICG00000010410)	DOCK8 (ENSMICG00000008267)	ENSMICG00000031232	ENSMICG00000005330	ENSMICG00000036465	PGM5 (ENSMICG00000015998)
Lemuriformes_a	ANCESTRAL SPECIES	86	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896.q	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523.s	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Coquerels sifaka	MODERN SPECIES	549									RCL1 (ENSPCOG00000009611)	ENSPCOG00000024436	CDC37L1 (ENSPCOG00000025983)	PLPP6 (ENSPCOG00000013586)	SPATA6L (ENSPCOG00000001879)	SLC1A1 (ENSPCOG00000013653)	GLIS3 (ENSPCOG00000022619)	RFX3 (ENSPCOG00000022172) ##22	PUM3 (ENSPCOG00000027325)	KCNV2 (ENSPCOG00000023607)	VLDLR (ENSPCOG00000026506)	ENSPCOG00000019796	ENSPCOG00000026110	SMARCA2 (ENSPCOG00000025709)
Greater bamboo lemur	MODERN SPECIES	152		PDCD1LG2 (ENSPSMG00000024781)	CD274 (ENSPSMG00000024783)	PLGRKT (ENSPSMG00000024787)	ENSPSMG00000024791	INSL6 (ENSPSMG00000024793)	ENSPSMG00000024795	JAK2 (ENSPSMG00000024838)	RCL1 (ENSPSMG00000024848)	AK3 (ENSPSMG00000024859)	CDC37L1 (ENSPSMG00000024864)	SPATA6L (ENSPSMG00000024878)	PLPP6 (ENSPSMG00000024881)	SLC1A1 (ENSPSMG00000024890)	GLIS3 (ENSPSMG00000024897)	RFX3 (ENSPSMG00000024938) ##22	ENSPSMG00000024950	ENSPSMG00000024956	KCNV2 (ENSPSMG00000024960)	VLDLR (ENSPSMG00000025041)	ENSPSMG00000025075	SMARCA2 (ENSPSMG00000025173)	ENSPSMG00000025195	DMRT2 (ENSPSMG00000025206)	DMRT3 (ENSPSMG00000025210)	DMRT1 (ENSPSMG00000025222)	KANK1 (ENSPSMG00000025243)	DOCK8 (ENSPSMG00000025332)	ENSPSMG00000025574	ENSPSMG00000025644	PGM5 (ENSPSMG00000025652)
Bushbaby	MODERN SPECIES	121	MLANA (ENSOGAG00000010986)	ERMP1 (ENSOGAG00000012020)	RIC1 (ENSOGAG00000012009)	PDCD1LG2 (ENSOGAG00000003284)	CD274 (ENSOGAG00000003282)	PLGRKT (ENSOGAG00000003280)	ENSOGAG00000009500	JAK2 (ENSOGAG00000012246)	RCL1 (ENSOGAG00000007480)	AK3 (ENSOGAG00000007477)	CDC37L1 (ENSOGAG00000007475)	SPATA6L (ENSOGAG00000007468)	PLPP6 (ENSOGAG00000007472)	SLC1A1 (ENSOGAG00000007464)	GLIS3 (ENSOGAG00000007376)	RFX3 (ENSOGAG00000007762) ##22	ENSOGAG00000008125	KCNV2 (ENSOGAG00000030433)	VLDLR (ENSOGAG00000013312)	SMARCA2 (ENSOGAG00000017053)	ENSOGAG00000025218	DMRT2 (ENSOGAG00000001994)	DMRT3 (ENSOGAG00000026565)	DMRT1 (ENSOGAG00000001989)	KANK1 (ENSOGAG00000001985)	ENSOGAG00000031226	DOCK8 (ENSOGAG00000004639)	ENSOGAG00000002011	ENSOGAG00000029277	PGM5 (ENSOGAG00000015121)	TMEM252 (ENSOGAG00000015132)
Euarchontoglires_A	ANCESTRAL SPECIES	10	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Glires	ANCESTRAL SPECIES	9	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Rodentia	ANCESTRAL SPECIES	9	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Rodentia_B	ANCESTRAL SPECIES	6	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Myomorpha	ANCESTRAL SPECIES	1	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Muroidea	ANCESTRAL SPECIES	1	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Muroidea_A	ANCESTRAL SPECIES		ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Cricetinae	ANCESTRAL SPECIES	2	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Chinese hamster chok1gshd	MODERN SPECIES	401	Ric1 (ENSCGRG00001016728)	Pdcd1lg2 (ENSCGRG00001015183)	ENSCGRG00001013276	Cd274 (ENSCGRG00001024294)	Plgrkt (ENSCGRG00001023695)	Insl6 (ENSCGRG00001020673)	Jak2 (ENSCGRG00001015840)	Rcl1 (ENSCGRG00001013748)	AK3 (ENSCGRG00001007296)	Cdc37l1 (ENSCGRG00001000264)	Plpp6 (ENSCGRG00001012981)	Spata6l (ENSCGRG00001002881)	ENSCGRG00001023585	Slc1a1 (ENSCGRG00001022336)	Glis3 (ENSCGRG00001014233)	Rfx3 (ENSCGRG00001021745) ##22	Pum3 (ENSCGRG00001016402)	Kcnv2 (ENSCGRG00001018140)	ENSCGRG00001017895	Vldlr (ENSCGRG00001014399)	Smarca2 (ENSCGRG00001002323)	Dmrt2 (ENSCGRG00001007562)	Dmrt3 (ENSCGRG00001005036)	Dmrt1 (ENSCGRG00001000625)	Kank1 (ENSCGRG00001020355)	Dock8 (ENSCGRG00001013079)	Cbwd1 (ENSCGRG00001020851)	Foxd4 (ENSCGRG00001006276)	Pgm5 (ENSCGRG00001020037)	Tmem252 (ENSCGRG00001019081)	Fam122a (ENSCGRG00001012685)
Golden Hamster	MODERN SPECIES	617	Mlana (ENSMAUG00000006750)	Ermp1 (ENSMAUG00000008682)	Ric1 (ENSMAUG00000008752)	Pdcd1lg2 (ENSMAUG00000007055)	Cd274 (ENSMAUG00000008788)	Plgrkt (ENSMAUG00000007601)	Rln1 (ENSMAUG00000008598)	Insl6 (ENSMAUG00000008553)	Jak2 (ENSMAUG00000008571)	Rcl1 (ENSMAUG00000008922)	Ak3 (ENSMAUG00000008253)	Cdc37l1 (ENSMAUG00000008847)	Spata6l (ENSMAUG00000010530)	Plpp6 (ENSMAUG00000001915)	Slc1a1 (ENSMAUG00000009046)	Rfx3 (ENSMAUG00000009987) ##22	Pum3 (ENSMAUG00000009733)	Kcnv2 (ENSMAUG00000008727)	ENSMAUG00000008768	ENSMAUG00000008613	ENSMAUG00000008807	ENSMAUG00000010070	Dmrt2 (ENSMAUG00000010038)	Dmrt3 (ENSMAUG00000008904)	ENSMAUG00000008975	Kank1 (ENSMAUG00000009263)	ENSMAUG00000009191	ENSMAUG00000009538	Cbwd1 (ENSMAUG00000009107)	Pgm5 (ENSMAUG00000009185)	Tmem252 (ENSMAUG00000008962)
Cricetidae_B	ANCESTRAL SPECIES	1	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b	ENSGT00940000156639
Prairie vole	MODERN SPECIES	16	Ric1 (ENSMOCG00000018339)	Pdcd1lg2 (ENSMOCG00000002927)	Cd274 (ENSMOCG00000016738)	Plgrkt (ENSMOCG00000013870)	Rln1 (ENSMOCG00000012108)	Insl6 (ENSMOCG00000015208)	Jak2 (ENSMOCG00000013580)	Rcl1 (ENSMOCG00000012145)	Ak3 (ENSMOCG00000010856)	Cdc37l1 (ENSMOCG00000018341)	Plpp6 (ENSMOCG00000001135)	Spata6l (ENSMOCG00000022082)	ENSMOCG00000018225	Slc1a1 (ENSMOCG00000017507)	Glis3 (ENSMOCG00000009953)	Rfx3 (ENSMOCG00000018931) ##22	ENSMOCG00000019519	Kcnv2 (ENSMOCG00000014872)	Vldlr (ENSMOCG00000004269)	Smarca2 (ENSMOCG00000001611)	Dmrt2 (ENSMOCG00000016701)	Dmrt3 (ENSMOCG00000015270)	ENSMOCG00000017971	Kank1 (ENSMOCG00000020725)	Dock8 (ENSMOCG00000014249)	Cbwd1 (ENSMOCG00000015974)	Pgm5 (ENSMOCG00000011710)	Tmem252 (ENSMOCG00000017938)	Fam122a (ENSMOCG00000001051)	ENSMOCG00000010285	Pip5k1b (ENSMOCG00000017594)
Northern American deer mouse	MODERN SPECIES		Pdcd1lg2 (ENSPEMG00000021972)	Cd274 (ENSPEMG00000022427)	Plgrkt (ENSPEMG00000022507)	Rln1 (ENSPEMG00000022594)	ENSPEMG00000023396	Jak2 (ENSPEMG00000022083)	Rcl1 (ENSPEMG00000023275)	Ak3 (ENSPEMG00000022781)	Cdc37l1 (ENSPEMG00000000344)	Plpp6 (ENSPEMG00000007181)	Spata6l (ENSPEMG00000023122)	ENSPEMG00000021571	Slc1a1 (ENSPEMG00000009611)	ENSPEMG00000004286	Glis3 (ENSPEMG00000020002)	Rfx3 (ENSPEMG00000019731) ##22	ENSPEMG00000019340	ENSPEMG00000030423	Kcnv2 (ENSPEMG00000020138)	Vldlr (ENSPEMG00000022250)	ENSPEMG00000021666	Smarca2 (ENSPEMG00000019821)	Dmrt2 (ENSPEMG00000019767)	Dmrt3 (ENSPEMG00000019990)	Dmrt1 (ENSPEMG00000019943)	Kank1 (ENSPEMG00000013916)	Dock8 (ENSPEMG00000014001)	Cbwd1 (ENSPEMG00000000396)	Pgm5 (ENSPEMG00000020205)	Tmem252 (ENSPEMG00000007137)	Fam122a (ENSPEMG00000012823)
Murinae	ANCESTRAL SPECIES		ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Mus	ANCESTRAL SPECIES		ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00520000061590	ENSGT00940000155460	ENSGT00900000143396	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Mus_A	ANCESTRAL SPECIES	16	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00520000061590	ENSGT00940000155460	ENSGT00900000143396	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Ryukyu mouse	MODERN SPECIES	10	Ermp1 (MGP_CAROLIEiJ_G0022861)	Ric1 (MGP_CAROLIEiJ_G0022860)	Pdcd1lg2 (MGP_CAROLIEiJ_G0022859)	Cd274 (MGP_CAROLIEiJ_G0022858)	Plgrkt (MGP_CAROLIEiJ_G0022857)	Rln1 (MGP_CAROLIEiJ_G0022856)	Insl6 (MGP_CAROLIEiJ_G0022855)	Jak2 (MGP_CAROLIEiJ_G0022854)	Rcl1 (MGP_CAROLIEiJ_G0022853)	Ak3 (MGP_CAROLIEiJ_G0022852)	Cdc37l1 (MGP_CAROLIEiJ_G0022851)	Plpp6 (MGP_CAROLIEiJ_G0022850)	Spata6l (MGP_CAROLIEiJ_G0022849)	Slc1a1 (MGP_CAROLIEiJ_G0022848)	Glis3 (MGP_CAROLIEiJ_G0022847)	Rfx3 (MGP_CAROLIEiJ_G0022846) ##22	Pum3 (MGP_CAROLIEiJ_G0022845)	Kcnv2 (MGP_CAROLIEiJ_G0022844)	Vldlr (MGP_CAROLIEiJ_G0022843)	MGP_CAROLIEiJ_G0022842	Smarca2 (MGP_CAROLIEiJ_G0022841)	Dmrt2 (MGP_CAROLIEiJ_G0022840)	Dmrt3 (MGP_CAROLIEiJ_G0022839)	Dmrt1 (MGP_CAROLIEiJ_G0022838)	Kank1 (MGP_CAROLIEiJ_G0022837)	Dock8 (MGP_CAROLIEiJ_G0022836)	Cbwd1 (MGP_CAROLIEiJ_G0022835)	Foxd4 (MGP_CAROLIEiJ_G0022834)	Pgm5 (MGP_CAROLIEiJ_G0022833)	Tmem252 (MGP_CAROLIEiJ_G0022832)	Fam122a (MGP_CAROLIEiJ_G0022831)
Mus_B	ANCESTRAL SPECIES	16	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00520000061590	ENSGT00940000155460	ENSGT00900000143396	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Mouse	MODERN SPECIES	10	Ermp1 (ENSMUSG00000046324)	Ric1 (ENSMUSG00000038658)	Pdcd1lg2 (ENSMUSG00000016498)	Cd274 (ENSMUSG00000016496)	Plgrkt (ENSMUSG00000016495)	Rln1 (ENSMUSG00000039097)	Insl6 (ENSMUSG00000050957)	Jak2 (ENSMUSG00000024789)	Rcl1 (ENSMUSG00000024785)	Ak3 (ENSMUSG00000024782)	Cdc37l1 (ENSMUSG00000024780)	Plpp6 (ENSMUSG00000040105)	Spata6l (ENSMUSG00000064202)	Slc1a1 (ENSMUSG00000024935)	Glis3 (ENSMUSG00000052942)	Rfx3 (ENSMUSG00000040929) ##22	Pum3 (ENSMUSG00000041360)	Kcnv2 (ENSMUSG00000047298)	Vldlr (ENSMUSG00000024924)	Gm815 (ENSMUSG00000074913)	Smarca2 (ENSMUSG00000024921)	Dmrt2 (ENSMUSG00000048138)	Dmrt3 (ENSMUSG00000042372)	Dmrt1 (ENSMUSG00000024837)	Kank1 (ENSMUSG00000032702)	Dock8 (ENSMUSG00000052085)	Cbwd1 (ENSMUSG00000024878)	Foxd4 (ENSMUSG00000051490)	Gm10053 (ENSMUSG00000058927)	Pgm5 (ENSMUSG00000041731)	Tmem252 (ENSMUSG00000048572)
Mus_C	ANCESTRAL SPECIES	24	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00520000061590	ENSGT00940000155460	ENSGT00900000143396	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
spretus	MODERN SPECIES	10	Ermp1 (MGP_SPRETEiJ_G0023779)	Ric1 (MGP_SPRETEiJ_G0023778)	Pdcd1lg2 (MGP_SPRETEiJ_G0023777)	Cd274 (MGP_SPRETEiJ_G0023776)	Plgrkt (MGP_SPRETEiJ_G0023775)	Rln1 (MGP_SPRETEiJ_G0023774)	Insl6 (MGP_SPRETEiJ_G0023773)	Jak2 (MGP_SPRETEiJ_G0023772)	Rcl1 (MGP_SPRETEiJ_G0023771)	Ak3 (MGP_SPRETEiJ_G0023770)	Cdc37l1 (MGP_SPRETEiJ_G0023769)	Plpp6 (MGP_SPRETEiJ_G0023768)	Spata6l (MGP_SPRETEiJ_G0023767)	Slc1a1 (MGP_SPRETEiJ_G0023766)	Glis3 (MGP_SPRETEiJ_G0023765)	Rfx3 (MGP_SPRETEiJ_G0023764) ##22	Pum3 (MGP_SPRETEiJ_G0023763)	Kcnv2 (MGP_SPRETEiJ_G0023762)	Vldlr (MGP_SPRETEiJ_G0023761)	MGP_SPRETEiJ_G0023760	Smarca2 (MGP_SPRETEiJ_G0023759)	Dmrt2 (MGP_SPRETEiJ_G0023758)	Dmrt3 (MGP_SPRETEiJ_G0023757)	Kank1 (MGP_SPRETEiJ_G0023756)	Dock8 (MGP_SPRETEiJ_G0023755)	Cbwd1 (MGP_SPRETEiJ_G0023754)	Foxd4 (MGP_SPRETEiJ_G0023753)	Pgm5 (MGP_SPRETEiJ_G0023752)	Tmem252 (MGP_SPRETEiJ_G0023751)	Fam122a (MGP_SPRETEiJ_G0023750)	Pip5k1b (MGP_SPRETEiJ_G0023749)
Steppe mouse	MODERN SPECIES	3106														Glis3 (ENSMSIG00000023382)	ENSMSIG00000023373	Rfx3 (ENSMSIG00000023245) ##22	Pum3 (ENSMSIG00000023194)	Kcnv2 (ENSMSIG00000023184)	ENSMSIG00000023160	Vldlr (ENSMSIG00000023084)	Gm815 (ENSMSIG00000023064)	Smarca2 (ENSMSIG00000022131)
Shrew mouse	MODERN SPECIES		Ermp1 (MGP_PahariEiJ_G0014354)	Ric1 (MGP_PahariEiJ_G0014353)	Pdcd1lg2 (MGP_PahariEiJ_G0014352)	Cd274 (MGP_PahariEiJ_G0014351)	MGP_PahariEiJ_G0014350	Rln1 (MGP_PahariEiJ_G0014349)	Insl6 (MGP_PahariEiJ_G0014348)	Jak2 (MGP_PahariEiJ_G0014347)	Rcl1 (MGP_PahariEiJ_G0014346)	Ak3 (MGP_PahariEiJ_G0014345)	Cdc37l1 (MGP_PahariEiJ_G0014344)	Plpp6 (MGP_PahariEiJ_G0014343)	Spata6l (MGP_PahariEiJ_G0014342)	Slc1a1 (MGP_PahariEiJ_G0014341)	Glis3 (MGP_PahariEiJ_G0014340)	Rfx3 (MGP_PahariEiJ_G0014339) ##22	Pum3 (MGP_PahariEiJ_G0014338)	Kcnv2 (MGP_PahariEiJ_G0014337)	Vldlr (MGP_PahariEiJ_G0014336)	MGP_PahariEiJ_G0014335	Smarca2 (MGP_PahariEiJ_G0014334)	Dmrt2 (MGP_PahariEiJ_G0014333)	Dmrt3 (MGP_PahariEiJ_G0014332)	Dmrt1 (MGP_PahariEiJ_G0014331)	Kank1 (MGP_PahariEiJ_G0014330)	Dock8 (MGP_PahariEiJ_G0014329)	Cbwd1 (MGP_PahariEiJ_G0014328)	Foxd4 (MGP_PahariEiJ_G0014327)	Pgm5 (MGP_PahariEiJ_G0014326)	Tmem252 (MGP_PahariEiJ_G0014325)	Fam122a (MGP_PahariEiJ_G0014324)
Rat	MODERN SPECIES		Cd274 (ENSRNOG00000016112)	Plgrkt (ENSRNOG00000015932)	Rln1 (ENSRNOG00000060867)	Insl6 (ENSRNOG00000015868)	Jak2 (ENSRNOG00000059968)	Rcl1 (ENSRNOG00000015491)	Ak3 (ENSRNOG00000052506)	Cdc37l1 (ENSRNOG00000010967)	RGD1565057 (ENSRNOG00000069618)	Plpp6 (ENSRNOG00000015268)	Spata6l (ENSRNOG00000015137)	ENSRNOG00000065811	Slc1a1 (ENSRNOG00000014816)	Glis3 (ENSRNOG00000014768)	ENSRNOG00000066761	Rfx3 (ENSRNOG00000014486) ##22	Pum3 (ENSRNOG00000012574)	Kcnv2 (ENSRNOG00000012566)	ENSRNOG00000062591	Vldlr (ENSRNOG00000027491)	ENSRNOG00000069446	Smarca2 (ENSRNOG00000011931)	ENSRNOG00000062555	Dmrt2 (ENSRNOG00000016301)	Dmrt3 (ENSRNOG00000016284)	Dmrt1 (ENSRNOG00000016075)	Kank1 (ENSRNOG00000016023)	Hmgb1-ps4 (ENSRNOG00000065098)	Dock8 (ENSRNOG00000015894)	Zng1a (ENSRNOG00000015516)	Foxd4 (ENSRNOG00000050486)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1166							Jak2 (ENSNGAG00000000096)	Rcl1 (ENSNGAG00000015327)	Ak3 (ENSNGAG00000016647)	Cdc37l1 (ENSNGAG00000018155)	Spata6l (ENSNGAG00000017948)	Plpp6 (ENSNGAG00000014756)	Slc1a1 (ENSNGAG00000014723)	ENSNGAG00000018137	Glis3 (ENSNGAG00000006111)	Rfx3 (ENSNGAG00000016470) ##22	Pum3 (ENSNGAG00000019468)	Kcnv2 (ENSNGAG00000020439)	Vldlr (ENSNGAG00000003966)	ENSNGAG00000012912	Smarca2 (ENSNGAG00000000108)	ENSNGAG00000013866	Dmrt2 (ENSNGAG00000020041)	Dmrt3 (ENSNGAG00000020423)	Dmrt1 (ENSNGAG00000001295)
Lesser Egyptian jerboa	MODERN SPECIES	50	Mlana (ENSJJAG00000022272)	Ermp1 (ENSJJAG00000021848)	Ric1 (ENSJJAG00000014841)	Plgrkt (ENSJJAG00000010846)	Rln1 (ENSJJAG00000013838)	Jak2 (ENSJJAG00000012271)	ENSJJAG00000022803	Ak3 (ENSJJAG00000023388)	Cdc37l1 (ENSJJAG00000024330)	Plpp6 (ENSJJAG00000011277)	Spata6l (ENSJJAG00000022941)	ENSJJAG00000020462	Slc1a1 (ENSJJAG00000018507)	Glis3 (ENSJJAG00000011399)	ENSJJAG00000024335	Rfx3 (ENSJJAG00000010280) ##22	ENSJJAG00000010263	Pum3 (ENSJJAG00000012563)	Kcnv2 (ENSJJAG00000016782)	ENSJJAG00000000409	Vldlr (ENSJJAG00000016440)	Smarca2 (ENSJJAG00000010867)	ENSJJAG00000010719	Dmrt2 (ENSJJAG00000023959)	Dmrt3 (ENSJJAG00000022573)	Dmrt1 (ENSJJAG00000016690)	Kank1 (ENSJJAG00000018774)	ENSJJAG00000015498	ENSJJAG00000017231	ENSJJAG00000009646	ENSJJAG00000013817
Kangaroo rat	MODERN SPECIES	359							ENSDORG00000028062	ENSDORG00000000109	Jak2 (ENSDORG00000011552)	Rcl1 (ENSDORG00000015645)	Ak3 (ENSDORG00000010355)	Cdc37l1 (ENSDORG00000023648)	Plpp6 (ENSDORG00000003071)	Slc1a1 (ENSDORG00000010091)	ENSDORG00000025494	Rfx3 (ENSDORG00000013906) ##22	ENSDORG00000003628	Kcnv2 (ENSDORG00000011511)	Vldlr (ENSDORG00000012954)	Smarca2 (ENSDORG00000014832)	Dmrt2 (ENSDORG00000007216)	ENSDORG00000006363	Kank1 (ENSDORG00000015159)	Dock8 (ENSDORG00000007203)	Cbwd1 (ENSDORG00000004917)	Pgm5 (ENSDORG00000005476)	Tmem252 (ENSDORG00000005477)	Fam122a (ENSDORG00000001152)	Pip5k1b (ENSDORG00000001153)	Fxn (ENSDORG00000027975)	Tjp2 (ENSDORG00000009039)
Rodentia_A	ANCESTRAL SPECIES	11	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Sciuridae	ANCESTRAL SPECIES	6	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Eurasian red squirrel	MODERN SPECIES	6	ERMP1 (ENSSVLG00005025117)	RIC1 (ENSSVLG00005025040)	PDCD1LG2 (ENSSVLG00005024955)	CD274 (ENSSVLG00005024930)	PLGRKT (ENSSVLG00005024908)	ENSSVLG00005024871	INSL6 (ENSSVLG00005024849)	JAK2 (ENSSVLG00005024808)	RCL1 (ENSSVLG00005024752)	ENSSVLG00005024721	CDC37L1 (ENSSVLG00005024699)	PLPP6 (ENSSVLG00005024689)	SPATA6L (ENSSVLG00005024615)	SLC1A1 (ENSSVLG00005024569)	GLIS3 (ENSSVLG00005024543)	RFX3 (ENSSVLG00005024420) ##22	ENSSVLG00005024401	PUM3 (ENSSVLG00005024338)	KCNV2 (ENSSVLG00005024318)	VLDLR (ENSSVLG00005024232)	ENSSVLG00005024201	SMARCA2 (ENSSVLG00005024009)	DMRT2 (ENSSVLG00005023918)	DMRT3 (ENSSVLG00005023888)	DMRT1 (ENSSVLG00005023845)	KANK1 (ENSSVLG00005023807)	DOCK8 (ENSSVLG00005023344)	ENSSVLG00005023280	ENSSVLG00005023230	ENSSVLG00005023212	PGM5 (ENSSVLG00005023081)
Marmotini	ANCESTRAL SPECIES	1	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Marmotini_b	ANCESTRAL SPECIES	88						ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Squirrel	MODERN SPECIES	103						ENSSTOG00000016298	JAK2 (ENSSTOG00000006679)	RCL1 (ENSSTOG00000000023)	AK3 (ENSSTOG00000000021)	CDC37L1 (ENSSTOG00000000020)	SPATA6L (ENSSTOG00000000018)	PLPP6 (ENSSTOG00000025831)	SLC1A1 (ENSSTOG00000023583)	ENSSTOG00000031708	GLIS3 (ENSSTOG00000000302)	RFX3 (ENSSTOG00000006974) ##22	PUM3 (ENSSTOG00000009586)	KCNV2 (ENSSTOG00000020003)	VLDLR (ENSSTOG00000006880)	ENSSTOG00000031987	SMARCA2 (ENSSTOG00000006812)	DMRT2 (ENSSTOG00000026909)	DMRT3 (ENSSTOG00000023574)	DMRT1 (ENSSTOG00000010235)	KANK1 (ENSSTOG00000010218)	ENSSTOG00000030036	DOCK8 (ENSSTOG00000016411)	ENSSTOG00000031824	ENSSTOG00000028764	ENSSTOG00000029964	PGM5 (ENSSTOG00000008834)
Hystricomorpha	ANCESTRAL SPECIES	46	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a.c.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Hystricomorpha_a	ANCESTRAL SPECIES	53	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a.c.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b.d	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Hystricomorpha_b	ANCESTRAL SPECIES	71	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a.c.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00900000143153	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b.d	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489.n	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Long-tailed chinchilla	MODERN SPECIES	141	RIC1 (ENSCLAG00000008085)	ENSCLAG00000007197	CD274 (ENSCLAG00000006370)	PLGRKT (ENSCLAG00000008570)	INSL6 (ENSCLAG00000007423)	JAK2 (ENSCLAG00000005091)	RCL1 (ENSCLAG00000007445)	AK3 (ENSCLAG00000006329)	CDC37L1 (ENSCLAG00000005805)	PLPP6 (ENSCLAG00000017735)	SPATA6L (ENSCLAG00000010497)	ENSCLAG00000009476	SLC1A1 (ENSCLAG00000009832)	ENSCLAG00000009238	GLIS3 (ENSCLAG00000008116)	RFX3 (ENSCLAG00000009044) ##22	PUM3 (ENSCLAG00000011892)	KCNV2 (ENSCLAG00000013226)	VLDLR (ENSCLAG00000007543)	SMARCA2 (ENSCLAG00000014484)	DMRT2 (ENSCLAG00000006168)	DMRT3 (ENSCLAG00000015537)	DMRT1 (ENSCLAG00000015238)	KANK1 (ENSCLAG00000015509)	DOCK8 (ENSCLAG00000005204)	ENSCLAG00000005076	ENSCLAG00000006762	PGM5 (ENSCLAG00000005854)	TMEM252 (ENSCLAG00000005523)	PIP5K1B (ENSCLAG00000011292)	FXN (ENSCLAG00000009225)
Degu	MODERN SPECIES	128	ERMP1 (ENSODEG00000005254)	RIC1 (ENSODEG00000004340)	CD274 (ENSODEG00000004298)	PLGRKT (ENSODEG00000004267)	INSL6 (ENSODEG00000004231)	ENSODEG00000004220	JAK2 (ENSODEG00000004208)	RCL1 (ENSODEG00000004151)	ENSODEG00000004121	CDC37L1 (ENSODEG00000004185)	PLPP6 (ENSODEG00000019026)	SPATA6L (ENSODEG00000004066)	ENSODEG00000003949	SLC1A1 (ENSODEG00000003884)	GLIS3 (ENSODEG00000003731)	RFX3 (ENSODEG00000003682) ##22	ENSODEG00000003625	KCNV2 (ENSODEG00000003536)	ENSODEG00000003492	ENSODEG00000006378	SMARCA2 (ENSODEG00000005452)	DMRT2 (ENSODEG00000004992)	DMRT3 (ENSODEG00000004984)	DMRT1 (ENSODEG00000004898)	KANK1 (ENSODEG00000004766)	ENSODEG00000004719	ENSODEG00000004711	ENSODEG00000004602	ENSODEG00000004467	ENSODEG00000003983	PGM5 (ENSODEG00000003917)
Guinea pig	MODERN SPECIES	21	ERMP1 (ENSCPOG00000013432)	RIC1 (ENSCPOG00000013425)	CD274 (ENSCPOG00000004371)	PLGRKT (ENSCPOG00000012720)	ENSCPOG00000001365	INSL6 (ENSCPOG00000002694)	JAK2 (ENSCPOG00000014653)	RCL1 (ENSCPOG00000015354)	AK3 (ENSCPOG00000011927)	CDC37L1 (ENSCPOG00000030938)	SPATA6L (ENSCPOG00000012925)	PLPP6 (ENSCPOG00000012931)	SLC1A1 (ENSCPOG00000011151)	ENSCPOG00000030794	GLIS3 (ENSCPOG00000005523)	RFX3 (ENSCPOG00000000900) ##22	ENSCPOG00000008552	KCNV2 (ENSCPOG00000032893)	VLDLR (ENSCPOG00000007685)	SMARCA2 (ENSCPOG00000005475)	DMRT2 (ENSCPOG00000008452)	DMRT3 (ENSCPOG00000005912)	DMRT1 (ENSCPOG00000005909)	KANK1 (ENSCPOG00000008389)	DOCK8 (ENSCPOG00000008366)	ENSCPOG00000019718	PGM5 (ENSCPOG00000015031)	TMEM252 (ENSCPOG00000013771)	PABIR1 (ENSCPOG00000003280)	PIP5K1B (ENSCPOG00000004288)	FXN (ENSCPOG00000004293)
Naked mole-rat female	MODERN SPECIES	3	ERMP1 (ENSHGLG00000018719)	RIC1 (ENSHGLG00000011155)	CD274 (ENSHGLG00000016786)	PLGRKT (ENSHGLG00000037089)	ENSHGLG00000019539	JAK2 (ENSHGLG00000011890)	ENSHGLG00000016452	ENSHGLG00000018975	CDC37L1 (ENSHGLG00000012329)	SPATA6L (ENSHGLG00000018477)	PLPP6 (ENSHGLG00000038858)	SLC1A1 (ENSHGLG00000015155)	ENSHGLG00000017534	ENSHGLG00000032696	ENSHGLG00000015091	ENSHGLG00000018913 ##22	ENSHGLG00000019207	ENSHGLG00000042585	ENSHGLG00000016314	ENSHGLG00000015868	KCNV2 (ENSHGLG00000015810)	VLDLR (ENSHGLG00000016113)	ENSHGLG00000016566	ENSHGLG00000035043	ENSHGLG00000005215	ENSHGLG00000013697	ENSHGLG00000035319	ENSHGLG00000036415	ENSHGLG00000033430	DMRT3 (ENSHGLG00000012858)	DMRT1 (ENSHGLG00000043033)
Lagomorpha	ANCESTRAL SPECIES	68	ENSGT00390000002955	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000183016.E.b.b	ENSGT01050000244818	ENSGT00940000153064.b.d	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22
Rabbit	MODERN SPECIES		ENSOCUG00000037721	JAK2 (ENSOCUG00000016853)	RCL1 (ENSOCUG00000008161)	ENSOCUG00000013279	ENSOCUG00000011411	CDC37L1 (ENSOCUG00000003468)	SPATA6L (ENSOCUG00000003455)	PLPP6 (ENSOCUG00000003465)	ENSOCUG00000022202	ENSOCUG00000026987	ENSOCUG00000013264	ENSOCUG00000036407	GLIS3 (ENSOCUG00000023004)	ENSOCUG00000027590	ENSOCUG00000023393	RFX3 (ENSOCUG00000014086) ##22	ENSOCUG00000039572	ENSOCUG00000004189	KCNV2 (ENSOCUG00000004385)	VLDLR (ENSOCUG00000002231)	ENSOCUG00000022775	SMARCA2 (ENSOCUG00000006320)	ENSOCUG00000000241	ENSOCUG00000035677	ENSOCUG00000023438	ENSOCUG00000034834	ENSOCUG00000037388	DMRT2 (ENSOCUG00000003299)	ENSOCUG00000027863	DMRT3 (ENSOCUG00000004582)	ENSOCUG00000036685
Pika	MODERN SPECIES	4377																RFX3 (ENSOPRG00000000862) ##22
Tree shrew	MODERN SPECIES	5100																RFX3 (ENSTBEG00000016009) ##22
Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b ##22
Common shrew	MODERN SPECIES	6932																RFX3 (ENSSARG00000013845) ##22
Hedgehog	MODERN SPECIES	8949																RFX3 (ENSEEUG00000013595) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Suina	ANCESTRAL SPECIES	23	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00520000061590	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Pig	MODERN SPECIES		PDCD1LG2 (ENSSSCG00000032561)	CD274 (ENSSSCG00000005211)	PLGRKT (ENSSSCG00000005212)	ENSSSCG00000005216	INSL6 (ENSSSCG00000005214)	JAK2 (ENSSSCG00000005215)	ENSSSCG00000052472	ENSSSCG00000005217	ENSSSCG00000058562	AK3 (ENSSSCG00000023595)	CDC37L1 (ENSSSCG00000005219)	SPATA6L (ENSSSCG00000005221)	PLPP6 (ENSSSCG00000005220)	SLC1A1 (ENSSSCG00000005222)	GLIS3 (ENSSSCG00000005224)	RFX3 (ENSSSCG00000005225) ##22	ENSSSCG00000039823	PUM3 (ENSSSCG00000005227)	KCNV2 (ENSSSCG00000005228)	VLDLR (ENSSSCG00000005229)	ENSSSCG00000040670	ENSSSCG00000052990	ENSSSCG00000041522	ENSSSCG00000005232	ENSSSCG00000057314	ENSSSCG00000032324	ENSSSCG00000044946	ENSSSCG00000046403	DMRT2 (ENSSSCG00000005233)	DMRT3 (ENSSSCG00000040481)	DMRT1 (ENSSSCG00000005236)
Chacoan peccary	MODERN SPECIES	20	CD274 (ENSCWAG00000021014)	PLGRKT (ENSCWAG00000021002)	ENSCWAG00000020963	INSL6 (ENSCWAG00000020954)	JAK2 (ENSCWAG00000020930)	ENSCWAG00000020920	ENSCWAG00000020913	RCL1 (ENSCWAG00000020883)	AK3 (ENSCWAG00000020856)	CDC37L1 (ENSCWAG00000020832)	PLPP6 (ENSCWAG00000020823)	SPATA6L (ENSCWAG00000020801)	SLC1A1 (ENSCWAG00000020776)	GLIS3 (ENSCWAG00000020767)	ENSCWAG00000020759	RFX3 (ENSCWAG00000020726) ##22	PUM3 (ENSCWAG00000020700)	KCNV2 (ENSCWAG00000020693)	ENSCWAG00000020684	VLDLR (ENSCWAG00000020653)	SMARCA2 (ENSCWAG00000020512)	ENSCWAG00000020471	DMRT2 (ENSCWAG00000020422)	DMRT3 (ENSCWAG00000020400)	DMRT1 (ENSCWAG00000020382)	KANK1 (ENSCWAG00000020332)	DOCK8 (ENSCWAG00000019884)	ENSCWAG00000019496	ENSCWAG00000019440	PGM5 (ENSCWAG00000019336)	TMEM252 (ENSCWAG00000019312)
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Camelidae	ANCESTRAL SPECIES	5	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a.e	ENSGT00940000154434.a.f	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000169111	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000164995	ENSGT00940000158126
Arabian camel	MODERN SPECIES	30	RIC1 (ENSCDRG00005004883)	PDCD1LG2 (ENSCDRG00005004849)	CD274 (ENSCDRG00005004734)	ENSCDRG00005004708	PLGRKT (ENSCDRG00005004613)	ENSCDRG00005004570	INSL6 (ENSCDRG00005004548)	JAK2 (ENSCDRG00005004520)	RCL1 (ENSCDRG00005004458)	AK3 (ENSCDRG00005004398)	CDC37L1 (ENSCDRG00005004358)	PLPP6 (ENSCDRG00005004350)	SPATA6L (ENSCDRG00005004284)	SLC1A1 (ENSCDRG00005004192)	GLIS3 (ENSCDRG00005004109)	RFX3 (ENSCDRG00005004007) ##22	ENSCDRG00005003916	PUM3 (ENSCDRG00005003846)	KCNV2 (ENSCDRG00005003822)	VLDLR (ENSCDRG00005003699)	ENSCDRG00005003352	DMRT2 (ENSCDRG00005003248)	DMRT3 (ENSCDRG00005003237)	DMRT1 (ENSCDRG00005003226)	KANK1 (ENSCDRG00005003188)	DOCK8 (ENSCDRG00005003115)	ENSCDRG00005003094	ENSCDRG00005002760	ENSCDRG00005002664	PGM5 (ENSCDRG00005002644)	TMEM252 (ENSCDRG00005002626)
Alpaca	MODERN SPECIES	2898															GLIS3 (ENSVPAG00000005473)	RFX3 (ENSVPAG00000005472) ##22
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Cetacea	ANCESTRAL SPECIES	9	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000164995	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Sperm whale	MODERN SPECIES	20	ERMP1 (ENSPCTG00005006142)	RIC1 (ENSPCTG00005006024)	PDCD1LG2 (ENSPCTG00005005956)	CD274 (ENSPCTG00005005931)	PLGRKT (ENSPCTG00005005902)	ENSPCTG00005005885	INSL6 (ENSPCTG00005005856)	JAK2 (ENSPCTG00005005720)	RCL1 (ENSPCTG00005005644)	AK3 (ENSPCTG00005005584)	CDC37L1 (ENSPCTG00005005531)	PLPP6 (ENSPCTG00005005512)	SPATA6L (ENSPCTG00005005489)	SLC1A1 (ENSPCTG00005005440)	GLIS3 (ENSPCTG00005005407)	RFX3 (ENSPCTG00005005359) ##22	ENSPCTG00005005299	PUM3 (ENSPCTG00005005228)	KCNV2 (ENSPCTG00005005193)	VLDLR (ENSPCTG00005004995)	ENSPCTG00005004736	ENSPCTG00005004691	ENSPCTG00005004671	DMRT2 (ENSPCTG00005004572)	DMRT3 (ENSPCTG00005004535)	DMRT1 (ENSPCTG00005004498)	KANK1 (ENSPCTG00005004438)	DOCK8 (ENSPCTG00005004178)	ENSPCTG00005004008	ENSPCTG00005003942	PGM5 (ENSPCTG00005003918)
Odontoceti_a	ANCESTRAL SPECIES	15	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Dolphin	MODERN SPECIES	2656																RFX3 (ENSTTRG00000003709) ##22
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT01050000244891.A.c.a.a	ENSGT00940000165777.a.a	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Beluga whale	MODERN SPECIES	50	PDCD1LG2 (ENSDLEG00000019719)	CD274 (ENSDLEG00000019715)	PLGRKT (ENSDLEG00000019711)	RLN1 (ENSDLEG00000019703)	ENSDLEG00000019692	JAK2 (ENSDLEG00000019680)	RCL1 (ENSDLEG00000019668)	AK3 (ENSDLEG00000019654)	CDC37L1 (ENSDLEG00000019644)	PLPP6 (ENSDLEG00000019637)	ENSDLEG00000019609	ENSDLEG00000019547	SLC1A1 (ENSDLEG00000019531)	ENSDLEG00000019522	ENSDLEG00000019514	RFX3 (ENSDLEG00000019460) ##22	PUM3 (ENSDLEG00000019389)	KCNV2 (ENSDLEG00000019382)	VLDLR (ENSDLEG00000019340)	SMARCA2 (ENSDLEG00000019318)	ENSDLEG00000019309	ENSDLEG00000019303	DMRT2 (ENSDLEG00000019289)	ENSDLEG00000019284	DMRT3 (ENSDLEG00000019280)	DMRT1 (ENSDLEG00000019261)	KANK1 (ENSDLEG00000019090)	DOCK8 (ENSDLEG00000012329)	ENSDLEG00000011652	ENSDLEG00000011631	PGM5 (ENSDLEG00000011615)
Narwhal	MODERN SPECIES	312	ERMP1 (ENSMMNG00015020481)	RIC1 (ENSMMNG00015020565)	PDCD1LG2 (ENSMMNG00015020694)	CD274 (ENSMMNG00015020739)	PLGRKT (ENSMMNG00015020757)	ENSMMNG00015020775	ENSMMNG00015020785	JAK2 (ENSMMNG00015020808)	RCL1 (ENSMMNG00015020841)	AK3 (ENSMMNG00015020890)	CDC37L1 (ENSMMNG00015020918)	SPATA6L (ENSMMNG00015020944)	PLPP6 (ENSMMNG00015020983)	SLC1A1 (ENSMMNG00015020990)	GLIS3 (ENSMMNG00015021011)	RFX3 (ENSMMNG00015021042) ##22	ENSMMNG00015021179	PUM3 (ENSMMNG00015021202)	KCNV2 (ENSMMNG00015021226)	VLDLR (ENSMMNG00015021252)	SMARCA2 (ENSMMNG00015021345)	ENSMMNG00015021422	ENSMMNG00015021427	DMRT2 (ENSMMNG00015013077)	DMRT3 (ENSMMNG00015013099)	DMRT1 (ENSMMNG00015013112)	KANK1 (ENSMMNG00015013138)	DOCK8 (ENSMMNG00015013245)	ENSMMNG00015013419	ENSMMNG00015013464	PGM5 (ENSMMNG00015013485)
Vaquita	MODERN SPECIES	17	KIAA2026 (ENSPSNG00000020897)	MLANA (ENSPSNG00000020843)	ERMP1 (ENSPSNG00000020793)	RIC1 (ENSPSNG00000020684)	ENSPSNG00000020589	PLGRKT (ENSPSNG00000020541)	ENSPSNG00000020509	JAK2 (ENSPSNG00000020398)	RCL1 (ENSPSNG00000020330)	AK3 (ENSPSNG00000020263)	CDC37L1 (ENSPSNG00000020228)	PLPP6 (ENSPSNG00000020203)	SPATA6L (ENSPSNG00000020084)	SLC1A1 (ENSPSNG00000019992)	GLIS3 (ENSPSNG00000019903)	RFX3 (ENSPSNG00000019643) ##22	PUM3 (ENSPSNG00000019496)	KCNV2 (ENSPSNG00000019443)	VLDLR (ENSPSNG00000019297)	SMARCA2 (ENSPSNG00000018802)	ENSPSNG00000018632	ENSPSNG00000018606	DMRT2 (ENSPSNG00000018429)	DMRT3 (ENSPSNG00000018387)	DMRT1 (ENSPSNG00000018301)	KANK1 (ENSPSNG00000018178)	DOCK8 (ENSPSNG00000016745)	ENSPSNG00000016463	ENSPSNG00000016403	PGM5 (ENSPSNG00000016170)	TMEM252 (ENSPSNG00000016104)
Blue whale	MODERN SPECIES	17	ERMP1 (ENSBMSG00010003832)	RIC1 (ENSBMSG00010003869)	PDCD1LG2 (ENSBMSG00010003898)	CD274 (ENSBMSG00010003928)	PLGRKT (ENSBMSG00010003942)	ENSBMSG00010003948	INSL6 (ENSBMSG00010003955)	JAK2 (ENSBMSG00010003969)	RCL1 (ENSBMSG00010003993)	AK3 (ENSBMSG00010004013)	CDC37L1 (ENSBMSG00010004036)	SPATA6L (ENSBMSG00010004050)	PLPP6 (ENSBMSG00010004080)	SLC1A1 (ENSBMSG00010004095)	GLIS3 (ENSBMSG00010004124)	RFX3 (ENSBMSG00010004165) ##22	PUM3 (ENSBMSG00010004204)	KCNV2 (ENSBMSG00010004219)	VLDLR (ENSBMSG00010004233)	SMARCA2 (ENSBMSG00010004262)	DMRT2 (ENSBMSG00010004396)	DMRT3 (ENSBMSG00010004420)	DMRT1 (ENSBMSG00010004442)	KANK1 (ENSBMSG00010000089)	ENSBMSG00010000100	DOCK8 (ENSBMSG00010000177)	ENSBMSG00010000431	ENSBMSG00010000512	PGM5 (ENSBMSG00010000557)	TMEM252 (ENSBMSG00010000603)	ENSBMSG00010000615
Pecora	ANCESTRAL SPECIES	30	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Percora_a	ANCESTRAL SPECIES	24	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Bovidae	ANCESTRAL SPECIES	14	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Bovinae	ANCESTRAL SPECIES	14	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Bos	ANCESTRAL SPECIES	10	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a
Bos_b	ANCESTRAL SPECIES	3	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a	ENSGT00390000005250
Hybrid Bos Indicus	MODERN SPECIES	27	ENSBIXG00005019603	PDCD1LG2 (ENSBIXG00005019595)	CD274 (ENSBIXG00005003188)	PLGRKT (ENSBIXG00005006397)	INSL6 (ENSBIXG00005003183)	JAK2 (ENSBIXG00005003171)	RCL1 (ENSBIXG00005019414)	AK3 (ENSBIXG00005019326)	CDC37L1 (ENSBIXG00005019277)	SPATA6L (ENSBIXG00005019220)	ENSBIXG00005019159	PLPP6 (ENSBIXG00005019138)	SLC1A1 (ENSBIXG00005019133)	ENSBIXG00005019106	GLIS3 (ENSBIXG00005002642)	RFX3 (ENSBIXG00005003091) ##22	ENSBIXG00005018899	PUM3 (ENSBIXG00005018805)	KCNV2 (ENSBIXG00005018778)	VLDLR (ENSBIXG00005003037)	ENSBIXG00005005990	SMARCA2 (ENSBIXG00005018551)	DMRT2 (ENSBIXG00005018266)	DMRT3 (ENSBIXG00005018199)	DMRT1 (ENSBIXG00005018189)	KANK1 (ENSBIXG00005018119)	DOCK8 (ENSBIXG00005002913)	ENSBIXG00005017167	ENSBIXG00005016626	PGM5 (ENSBIXG00005016605)	ENSBIXG00005002670
Cow	MODERN SPECIES	27	RIC1 (ENSBTAG00000001283)	PDCD1LG2 (ENSBTAG00000033316)	CD274 (ENSBTAG00000000095)	PLGRKT (ENSBTAG00000017530)	INSL6 (ENSBTAG00000006651)	JAK2 (ENSBTAG00000012047)	RCL1 (ENSBTAG00000018667)	AK3 (ENSBTAG00000017147)	CDC37L1 (ENSBTAG00000017137)	SPATA6L (ENSBTAG00000011048)	ENSBTAG00000046486	PLPP6 (ENSBTAG00000011050)	SLC1A1 (ENSBTAG00000019125)	ENSBTAG00000052736	ENSBTAG00000014467	RFX3 (ENSBTAG00000000819) ##22	PUM3 (ENSBTAG00000013357)	KCNV2 (ENSBTAG00000017884)	VLDLR (ENSBTAG00000018517)	ENSBTAG00000048500	ENSBTAG00000051041	SMARCA2 (ENSBTAG00000007494)	DMRT2 (ENSBTAG00000008062)	DMRT3 (ENSBTAG00000017800)	DMRT1 (ENSBTAG00000033352)	KANK1 (ENSBTAG00000010976)	DOCK8 (ENSBTAG00000002190)	ENSBTAG00000049728	ENSBTAG00000000269	ENSBTAG00000033122	PGM5 (ENSBTAG00000033190)
Bos_a	ANCESTRAL SPECIES	30	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00910000144347.a.a	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00390000009110.fb	ENSGT00940000158126	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.b.a.b.b.a
Wild yak	MODERN SPECIES	841															GLIS3 (ENSBMUG00000013788)	RFX3 (ENSBMUG00000013834) ##22	ENSBMUG00000013850	PUM3 (ENSBMUG00000013886)	KCNV2 (ENSBMUG00000013899)	VLDLR (ENSBMUG00000016795)	ENSBMUG00000017640
Domestic yak	MODERN SPECIES	26	CD274 (ENSBGRG00000006097)	PLGRKT (ENSBGRG00000006032)	INSL6 (ENSBGRG00000006012)	JAK2 (ENSBGRG00000005982)	ENSBGRG00000005967	RCL1 (ENSBGRG00000005812)	AK3 (ENSBGRG00000005727)	CDC37L1 (ENSBGRG00000005637)	ENSBGRG00000005568	PLPP6 (ENSBGRG00000005557)	SPATA6L (ENSBGRG00000005420)	SLC1A1 (ENSBGRG00000005214)	GLIS3 (ENSBGRG00000005123)	ENSBGRG00000005096	ENSBGRG00000005081	RFX3 (ENSBGRG00000004985) ##22	ENSBGRG00000004951	PUM3 (ENSBGRG00000004833)	KCNV2 (ENSBGRG00000004767)	VLDLR (ENSBGRG00000004545)	SMARCA2 (ENSBGRG00000004107)	DMRT2 (ENSBGRG00000003984)	DMRT3 (ENSBGRG00000003946)	DMRT1 (ENSBGRG00000003868)	KANK1 (ENSBGRG00000003717)	ENSBGRG00000003655	DOCK8 (ENSBGRG00000003466)	ENSBGRG00000002972	ENSBGRG00000002878	ENSBGRG00000002865	ENSBGRG00000002858
American bison	MODERN SPECIES	3328				CD274 (ENSBBBG00000015809)	PLGRKT (ENSBBBG00000015820)	INSL6 (ENSBBBG00000015826)	JAK2 (ENSBBBG00000015845)	RCL1 (ENSBBBG00000015884)	AK3 (ENSBBBG00000003960)	CDC37L1 (ENSBBBG00000002586)	ENSBBBG00000003969	PLPP6 (ENSBBBG00000015953)	SPATA6L (ENSBBBG00000015978)	SLC1A1 (ENSBBBG00000015989)	GLIS3 (ENSBBBG00000016019)	RFX3 (ENSBBBG00000003993) ##22	PUM3 (ENSBBBG00000007035)	KCNV2 (ENSBBBG00000016123)	ENSBBBG00000007174	VLDLR (ENSBBBG00000008333)	ENSBBBG00000016209	SMARCA2 (ENSBBBG00000004105)	DMRT2 (ENSBBBG00000016627)	DMRT3 (ENSBBBG00000016636)	DMRT1 (ENSBBBG00000016649)	KANK1 (ENSBBBG00000007906)	ENSBBBG00000000733	DOCK8 (ENSBBBG00000017006)	ENSBBBG00000017865	ENSBBBG00000017925	PGM5 (ENSBBBG00000004418)
Caprinae	ANCESTRAL SPECIES	14	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00660000097148	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Goat	MODERN SPECIES	27	RIC1 (ENSCHIG00000021856)	PDCD1LG2 (ENSCHIG00000024438)	CD274 (ENSCHIG00000017335)	PLGRKT (ENSCHIG00000017669)	JAK2 (ENSCHIG00000003903)	INSL6 (ENSCHIG00000020505)	RCL1 (ENSCHIG00000012407)	AK3 (ENSCHIG00000024602)	CDC37L1 (ENSCHIG00000025238)	ENSCHIG00000010369	SPATA6L (ENSCHIG00000020946)	PLPP6 (ENSCHIG00000001745)	SLC1A1 (ENSCHIG00000018337)	ENSCHIG00000007959	ENSCHIG00000019534	RFX3 (ENSCHIG00000011556) ##22	PUM3 (ENSCHIG00000021559)	KCNV2 (ENSCHIG00000011625)	VLDLR (ENSCHIG00000021572)	ENSCHIG00000012185	SMARCA2 (ENSCHIG00000025863)	DMRT2 (ENSCHIG00000020138)	DMRT3 (ENSCHIG00000013041)	DMRT1 (ENSCHIG00000024212)	KANK1 (ENSCHIG00000018134)	DOCK8 (ENSCHIG00000014695)	ENSCHIG00000024887	ENSCHIG00000006716	PGM5 (ENSCHIG00000006743)	TMEM252 (ENSCHIG00000021046)	PIP5K1B (ENSCHIG00000015013)
Rambouillet Sheep	MODERN SPECIES	11	ERMP1 (ENSOARG00020008927)	RIC1 (ENSOARG00020008132)	ENSOARG00020008062	ENSOARG00020008038	CD274 (ENSOARG00020007985)	PLGRKT (ENSOARG00020007941)	ENSOARG00020007887	JAK2 (ENSOARG00020007686)	RCL1 (ENSOARG00020007598)	AK3 (ENSOARG00020007523)	CDC37L1 (ENSOARG00020007479)	ENSOARG00020007455	PLPP6 (ENSOARG00020007422)	SLC1A1 (ENSOARG00020007364)	GLIS3 (ENSOARG00020007233)	RFX3 (ENSOARG00020006756) ##22	ENSOARG00020006681	PUM3 (ENSOARG00020006587)	KCNV2 (ENSOARG00020006537)	ENSOARG00020024556	VLDLR (ENSOARG00020024482)	SMARCA2 (ENSOARG00020024243)	DMRT2 (ENSOARG00020024148)	DMRT3 (ENSOARG00020024138)	DMRT1 (ENSOARG00020024107)	KANK1 (ENSOARG00020024004)	DOCK8 (ENSOARG00020022900)	ENSOARG00020022393	PGM5 (ENSOARG00020022177)	TMEM252 (ENSOARG00020022146)	FAM122A (ENSOARG00020022127)
Siberian musk deer	MODERN SPECIES	111					PLGRKT (ENSMMSG00000001829)	INSL6 (ENSMMSG00000001838)	JAK2 (ENSMMSG00000001846)	ENSMMSG00000001874	RCL1 (ENSMMSG00000001886)	AK3 (ENSMMSG00000001923)	CDC37L1 (ENSMMSG00000001936)	SPATA6L (ENSMMSG00000001959)	PLPP6 (ENSMMSG00000002003)	SLC1A1 (ENSMMSG00000002015)	GLIS3 (ENSMMSG00000002042)	RFX3 (ENSMMSG00000002070) ##22	ENSMMSG00000002091	PUM3 (ENSMMSG00000002099)	KCNV2 (ENSMMSG00000002132)	VLDLR (ENSMMSG00000002160)	ENSMMSG00000002256
Yarkand deer	MODERN SPECIES	21	MLANA (ENSCHYG00000026247)	ERMP1 (ENSCHYG00000026281)	RIC1 (ENSCHYG00000026365)	PDCD1LG2 (ENSCHYG00000026474)	CD274 (ENSCHYG00000026492)	PLGRKT (ENSCHYG00000026504)	INSL6 (ENSCHYG00000026514)	JAK2 (ENSCHYG00000026521)	RCL1 (ENSCHYG00000026548)	AK3 (ENSCHYG00000026564)	CDC37L1 (ENSCHYG00000026576)	SPATA6L (ENSCHYG00000026599)	PLPP6 (ENSCHYG00000026621)	SLC1A1 (ENSCHYG00000026638)	GLIS3 (ENSCHYG00000026667)	RFX3 (ENSCHYG00000026695) ##22	PUM3 (ENSCHYG00000026723)	KCNV2 (ENSCHYG00000026745)	VLDLR (ENSCHYG00000026763)	ENSCHYG00000026782	SMARCA2 (ENSCHYG00000026820)	DMRT2 (ENSCHYG00000026873)	DMRT3 (ENSCHYG00000026880)	DMRT1 (ENSCHYG00000014189)	ENSCHYG00000014288	KANK1 (ENSCHYG00000014368)	DOCK8 (ENSCHYG00000014734)	ENSCHYG00000015376	ENSCHYG00000016258	PGM5 (ENSCHYG00000016305)	ENSCHYG00000016626
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Carnivora	ANCESTRAL SPECIES	25	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Caniformia	ANCESTRAL SPECIES	29	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00940000164995	ENSGT00640000091523	ENSGT00940000163353
Caniformia_b	ANCESTRAL SPECIES	32	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Ursidae	ANCESTRAL SPECIES	43	ENSGT00950000183043.a.b.b.a.a.b.h	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Ursus	ANCESTRAL SPECIES	50	ENSGT00530000063839.g	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120.hb.a	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000166172	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Polar bear	MODERN SPECIES	171	ENSUMAG00000016687	ENSUMAG00000016690	RIC1 (ENSUMAG00000016695)	PDCD1LG2 (ENSUMAG00000016707)	CD274 (ENSUMAG00000016708)	ENSUMAG00000016719	INSL6 (ENSUMAG00000016724)	JAK2 (ENSUMAG00000016820)	RCL1 (ENSUMAG00000017890)	ENSUMAG00000017904	CDC37L1 (ENSUMAG00000017926)	SPATA6L (ENSUMAG00000017942)	ENSUMAG00000017954	SLC1A1 (ENSUMAG00000017970)	GLIS3 (ENSUMAG00000018031)	RFX3 (ENSUMAG00000018101) ##22	ENSUMAG00000018118	ENSUMAG00000018187	PUM3 (ENSUMAG00000018443)	KCNV2 (ENSUMAG00000018690)	VLDLR (ENSUMAG00000018747)	ENSUMAG00000019303	ENSUMAG00000019328	DMRT2 (ENSUMAG00000019339)	ENSUMAG00000019350	KANK1 (ENSUMAG00000019362)	DOCK8 (ENSUMAG00000019524)	ENSUMAG00000020081	PGM5 (ENSUMAG00000020142)	TMEM252 (ENSUMAG00000020280)	PABIR1 (ENSUMAG00000020302)
American black bear	MODERN SPECIES	3708																RFX3 (ENSUAMG00000019440) ##22	ENSUAMG00000019439
Giant Panda	MODERN SPECIES	8	ENSAMEG00000009909	ENSAMEG00000009883	RIC1 (ENSAMEG00000009846)	PDCD1LG2 (ENSAMEG00000009830)	PLGRKT (ENSAMEG00000009795)	CD274 (ENSAMEG00000009800)	ENSAMEG00000009780	INSL6 (ENSAMEG00000009778)	JAK2 (ENSAMEG00000009661)	RCL1 (ENSAMEG00000002631)	AK3 (ENSAMEG00000002640)	CDC37L1 (ENSAMEG00000002657)	ENSAMEG00000002674	SLC1A1 (ENSAMEG00000002682)	GLIS3 (ENSAMEG00000002733)	RFX3 (ENSAMEG00000012132) ##22	ENSAMEG00000012183	PUM3 (ENSAMEG00000012187)	KCNV2 (ENSAMEG00000012228)	VLDLR (ENSAMEG00000012233)	ENSAMEG00000027822	SMARCA2 (ENSAMEG00000012325)	ENSAMEG00000019747	DMRT2 (ENSAMEG00000006648)	DMRT3 (ENSAMEG00000006664)	KANK1 (ENSAMEG00000006667)	DOCK8 (ENSAMEG00000006698)	ENSAMEG00000006824	ENSAMEG00000025926	PGM5 (ENSAMEG00000008064)	TMEM252 (ENSAMEG00000008083)
Mustelinae	ANCESTRAL SPECIES	87	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000160907	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00940000164995	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Ferret	MODERN SPECIES	281	ENSMPUG00000004873	ERMP1 (ENSMPUG00000004878)	ENSMPUG00000004889	ENSMPUG00000004903	PDCD1LG2 (ENSMPUG00000004909)	CD274 (ENSMPUG00000004954)	ENSMPUG00000004961	INSL6 (ENSMPUG00000004968)	JAK2 (ENSMPUG00000004974)	RCL1 (ENSMPUG00000004998)	AK3 (ENSMPUG00000005006)	CDC37L1 (ENSMPUG00000005018)	SPATA6L (ENSMPUG00000005024)	SLC1A1 (ENSMPUG00000005081)	GLIS3 (ENSMPUG00000005095)	RFX3 (ENSMPUG00000005101) ##22	ENSMPUG00000005120	PUM3 (ENSMPUG00000005125)	KCNV2 (ENSMPUG00000005137)	VLDLR (ENSMPUG00000005155)	ENSMPUG00000005169	SMARCA2 (ENSMPUG00000005171)	ENSMPUG00000005192	DMRT2 (ENSMPUG00000005199)	DMRT1 (ENSMPUG00000005204)	KANK1 (ENSMPUG00000005216)	DOCK8 (ENSMPUG00000005223)	ENSMPUG00000005707
American mink	MODERN SPECIES	72																RFX3 (ENSNVIG00000007796) ##22	K0020 (ENSNVIG00000007919)	KCNV2 (ENSNVIG00000007991)	VLDLR (ENSNVIG00000008014)	SMARCA2 (ENSNVIG00000008097)	DMRT2 (ENSNVIG00000008589)	DMRT3 (ENSNVIG00000008601)	DMRT1 (ENSNVIG00000008608)	KANK1 (ENSNVIG00000008630)	DOCK8 (ENSNVIG00000008726)	ENSNVIG00000008929	ENSNVIG00000009420	PGM5 (ENSNVIG00000009442)	CI071 (ENSNVIG00000009508)	PIP5K1B (ENSNVIG00000009548)	FXN (ENSNVIG00000009610)
Canidae	ANCESTRAL SPECIES	47	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120.lb.b	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Red fox	MODERN SPECIES	37	ERMP1 (ENSVVUG00000007447)	RIC1 (ENSVVUG00000007409)	PDCD1LG2 (ENSVVUG00000007366)	PLGRKT (ENSVVUG00000007362)	ENSVVUG00000007360	CD274 (ENSVVUG00000007347)	INSL6 (ENSVVUG00000007335)	JAK2 (ENSVVUG00000007315)	RCL1 (ENSVVUG00000007304)	AK3 (ENSVVUG00000007282)	CDC37L1 (ENSVVUG00000007275)	ENSVVUG00000007267	SPATA6L (ENSVVUG00000007223)	SLC1A1 (ENSVVUG00000007200)	GLIS3 (ENSVVUG00000007122)	RFX3 (ENSVVUG00000006609) ##22	ENSVVUG00000006545	PUM3 (ENSVVUG00000006527)	KCNV2 (ENSVVUG00000006518)	ENSVVUG00000006514	VLDLR (ENSVVUG00000004925)	ENSVVUG00000004598	ENSVVUG00000004580	DMRT2 (ENSVVUG00000004562)	DMRT3 (ENSVVUG00000004555)	DMRT1 (ENSVVUG00000004545)	KANK1 (ENSVVUG00000004494)	DOCK8 (ENSVVUG00000004407)	ENSVVUG00000004359	PGM5 (ENSVVUG00000004340)	TMEM252 (ENSVVUG00000004338)
Canis_lupus	ANCESTRAL SPECIES		ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT01050000248397	ENSGT00530000063404.a	ENSGT00940000155120.lb.b	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00950000182772.A.a.b.n.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00950000183030.m.a.b.a.a.a	ENSGT00940000158126
Dog	MODERN SPECIES		PLGRKT (ENSCAFG00845016070)	RLN2 (ENSCAFG00845016044)	INSL6 (ENSCAFG00845016024)	ENSCAFG00845016006	JAK2 (ENSCAFG00845015887)	ENSCAFG00845015836	JAK2 (ENSCAFG00845015728)	ENSCAFG00845015667	ENSCAFG00845015626	CDC37L1 (ENSCAFG00845015553)	PLPP6 (ENSCAFG00845002916)	SPATA6L (ENSCAFG00845002856)	SLC1A1 (ENSCAFG00845002818)	GLIS3 (ENSCAFG00845002759)	ENSCAFG00845002739	RFX3 (ENSCAFG00845002562) ##22	ENSCAFG00845002474	PUM3 (ENSCAFG00845002440)	KCNV2 (ENSCAFG00845002424)	VLDLR (ENSCAFG00845002345)	SMARCA2 (ENSCAFG00845002161)	ENSCAFG00845002045	DMRT2 (ENSCAFG00845002026)	DMRT3 (ENSCAFG00845002003)	DMRT1 (ENSCAFG00845001983)	KANK1 (ENSCAFG00845001908)	DOCK8 (ENSCAFG00845001647)	ZNG1A (ENSCAFG00845001577)	ENSCAFG00845001539	PGM5 (ENSCAFG00845001506)	TMEM252 (ENSCAFG00845001485)
Dingo	MODERN SPECIES	125	PLGRKT (ENSCAFG00020005050)	ENSCAFG00020005012	INSL6 (ENSCAFG00020005010)	JAK2 (ENSCAFG00020001020)	ENSCAFG00020000670	ENSCAFG00020000655	RCL1 (ENSCAFG00020000638)	ENSCAFG00020000622	ENSCAFG00020000594	CDC37L1 (ENSCAFG00020000516)	PLPP6 (ENSCAFG00020000503)	SPATA6L (ENSCAFG00020000384)	SLC1A1 (ENSCAFG00020000361)	GLIS3 (ENSCAFG00020000104)	ENSCAFG00020026870	RFX3 (ENSCAFG00020026868) ##22	PUM3 (ENSCAFG00020026867)	KCNV2 (ENSCAFG00020026866)	VLDLR (ENSCAFG00020026865)	ENSCAFG00020026863	ENSCAFG00020026802	ENSCAFG00020026766	ENSCAFG00020026759	DMRT2 (ENSCAFG00020026753)	DMRT3 (ENSCAFG00020026752)	DMRT1 (ENSCAFG00020026750)	KANK1 (ENSCAFG00020026742)	DOCK8 (ENSCAFG00020026637)	ENSCAFG00020026627	ENSCAFG00020026625	ENSCAFG00020026623
Felidae	ANCESTRAL SPECIES	28	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Panthera	ANCESTRAL SPECIES	34	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000155028.q.b.e.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
Panthera_a	ANCESTRAL SPECIES	35	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250
leopard	MODERN SPECIES	42	ENSPPRG00000023237	ERMP1 (ENSPPRG00000023169)	RIC1 (ENSPPRG00000022984)	PDCD1LG2 (ENSPPRG00000022891)	CD274 (ENSPPRG00000022858)	PLGRKT (ENSPPRG00000022792)	INSL6 (ENSPPRG00000022777)	JAK2 (ENSPPRG00000022744)	RCL1 (ENSPPRG00000022645)	AK3 (ENSPPRG00000000041)	CDC37L1 (ENSPPRG00000000059)	PLPP6 (ENSPPRG00000019670)	SPATA6L (ENSPPRG00000000218)	SLC1A1 (ENSPPRG00000000232)	GLIS3 (ENSPPRG00000000400)	RFX3 (ENSPPRG00000000606) ##22	ENSPPRG00000000748	PUM3 (ENSPPRG00000000809)	KCNV2 (ENSPPRG00000000862)	VLDLR (ENSPPRG00000000915)	ENSPPRG00000001027	SMARCA2 (ENSPPRG00000001879)	DMRT2 (ENSPPRG00000002109)	DMRT3 (ENSPPRG00000002367)	DMRT1 (ENSPPRG00000002380)	KANK1 (ENSPPRG00000002516)	DOCK8 (ENSPPRG00000003143)	ENSPPRG00000005315	ENSPPRG00000005661	PGM5 (ENSPPRG00000005783)	TMEM252 (ENSPPRG00000005826)
lion	MODERN SPECIES	13	ERMP1 (ENSPLOG00000019376)	RIC1 (ENSPLOG00000019269)	PDCD1LG2 (ENSPLOG00000019232)	CD274 (ENSPLOG00000019211)	PLGRKT (ENSPLOG00000019176)	ENSPLOG00000019152	INSL6 (ENSPLOG00000019128)	JAK2 (ENSPLOG00000019062)	RCL1 (ENSPLOG00000019004)	AK3 (ENSPLOG00000018913)	CDC37L1 (ENSPLOG00000018840)	PLPP6 (ENSPLOG00000018812)	SPATA6L (ENSPLOG00000018652)	SLC1A1 (ENSPLOG00000018538)	GLIS3 (ENSPLOG00000018479)	RFX3 (ENSPLOG00000018336) ##22	ENSPLOG00000018220	PUM3 (ENSPLOG00000018076)	KCNV2 (ENSPLOG00000018027)	VLDLR (ENSPLOG00000017962)	ENSPLOG00000017911	SMARCA2 (ENSPLOG00000017478)	DMRT2 (ENSPLOG00000017190)	DMRT3 (ENSPLOG00000017150)	DMRT1 (ENSPLOG00000017065)	KANK1 (ENSPLOG00000016894)	DOCK8 (ENSPLOG00000015754)	ENSPLOG00000014827	ENSPLOG00000014655	PGM5 (ENSPLOG00000014414)	TMEM252 (ENSPLOG00000014372)
Tiger	MODERN SPECIES	463	ERMP1 (ENSPTIG00000005202)	RIC1 (ENSPTIG00000007073)	PDCD1LG2 (ENSPTIG00000013516)	CD274 (ENSPTIG00000014398)	PLGRKT (ENSPTIG00000015914)	ENSPTIG00000016439	INSL6 (ENSPTIG00000016722)	JAK2 (ENSPTIG00000016939)	RCL1 (ENSPTIG00000019031)	AK3 (ENSPTIG00000000703)	CDC37L1 (ENSPTIG00000008469)	SPATA6L (ENSPTIG00000011794)	SLC1A1 (ENSPTIG00000013599)	ENSPTIG00000014983	GLIS3 (ENSPTIG00000015969)	RFX3 (ENSPTIG00000017617) ##22	ENSPTIG00000021167	PUM3 (ENSPTIG00000021934)	VLDLR (ENSPTIG00000005593)	ENSPTIG00000009737	ENSPTIG00000010794	ENSPTIG00000015817
Cat	MODERN SPECIES	244	RIC1 (ENSFCAG00000014910)	PDCD1LG2 (ENSFCAG00000009048)	CD274 (ENSFCAG00000009047)	PLGRKT (ENSFCAG00000039638)	RLN (ENSFCAG00000011471)	INSL6 (ENSFCAG00000044599)	JAK2 (ENSFCAG00000028588)	RCL1 (ENSFCAG00000014557)	AK3 (ENSFCAG00000028063)	CDC37L1 (ENSFCAG00000027076)	SPATA6L (ENSFCAG00000002369)	PLPP6 (ENSFCAG00000038113)	SLC1A1 (ENSFCAG00000023590)	ENSFCAG00000037557	GLIS3 (ENSFCAG00000046401)	RFX3 (ENSFCAG00000012950) ##22	ENSFCAG00000013260	KCNV2 (ENSFCAG00000004335)	VLDLR (ENSFCAG00000013257)	ENSFCAG00000041218	SMARCA2 (ENSFCAG00000001568)	DMRT2 (ENSFCAG00000006461)	DMRT3 (ENSFCAG00000036847)	DMRT1 (ENSFCAG00000006459)	KANK1 (ENSFCAG00000006458)	DOCK8 (ENSFCAG00000012046)	ENSFCAG00000047266	ENSFCAG00000012045	ENSFCAG00000043244	PGM5 (ENSFCAG00000008050)	TMEM252 (ENSFCAG00000008053)
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Equus	ANCESTRAL SPECIES	37	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00520000061590	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00410000028750	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126
Donkey	MODERN SPECIES	15	ERMP1 (ENSEASG00005010680)	RIC1 (ENSEASG00005010673)	PDCD1LG2 (ENSEASG00005010667)	CD274 (ENSEASG00005010663)	PLGRKT (ENSEASG00005034012)	ENSEASG00005010659	INSL6 (ENSEASG00005037792)	JAK2 (ENSEASG00005010656)	RCL1 (ENSEASG00005010653)	AK3 (ENSEASG00005010651)	CDC37L1 (ENSEASG00005010646)	SPATA6L (ENSEASG00005010642)	PLPP6 (ENSEASG00005010645)	SLC1A1 (ENSEASG00005010637)	GLIS3 (ENSEASG00005010634)	RFX3 (ENSEASG00005010402) ##22	ENSEASG00005010358	ENSEASG00005010361	PUM3 (ENSEASG00005010350)	KCNV2 (ENSEASG00005010348)	VLDLR (ENSEASG00005010330)	ENSEASG00005010323	ENSEASG00005033232	ENSEASG00005032228	DMRT2 (ENSEASG00005010307)	DMRT3 (ENSEASG00005010303)	DMRT1 (ENSEASG00005010297)	KANK1 (ENSEASG00005010292)	DOCK8 (ENSEASG00005009734)	ENSEASG00005009634	ENSEASG00005009631
Horse	MODERN SPECIES	15	RIC1 (ENSECAG00000006558)	PDCD1LG2 (ENSECAG00000020578)	CD274 (ENSECAG00000016312)	PLGRKT (ENSECAG00000051327)	PLGRKT (ENSECAG00000015003)	INSL6 (ENSECAG00000053846)	JAK2 (ENSECAG00000009119)	RCL1 (ENSECAG00000015973)	ENSECAG00000058759 ##19	AK3 (ENSECAG00000011235)	CDC37L1 (ENSECAG00000000269)	PLPP6 (ENSECAG00000023969)	SPATA6L (ENSECAG00000021902)	SLC1A1 (ENSECAG00000010935)	GLIS3 (ENSECAG00000020544)	RFX3 (ENSECAG00000011075) ##22	ENSECAG00000009736	PUM3 (ENSECAG00000017193)	KCNV2 (ENSECAG00000016602)	ENSECAG00000037169	VLDLR (ENSECAG00000021859)	ENSECAG00000045647	ENSECAG00000047891	DMRT2 (ENSECAG00000035701)	DMRT3 (ENSECAG00000023412)	DMRT1 (ENSECAG00000060160)	KANK1 (ENSECAG00000016219)	DOCK8 (ENSECAG00000011917)	ENSECAG00000041352	ENSECAG00000014036	ENSECAG00000003227
Chiroptera	ANCESTRAL SPECIES	40	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Microchiroptera	ANCESTRAL SPECIES	36	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b
Greater horseshoe bat	MODERN SPECIES	3	CD274 (ENSRFEG00010014726)	PLGRKT (ENSRFEG00010014761)	ENSRFEG00010014802	ENSRFEG00010014826	ENSRFEG00010014899	INSL6 (ENSRFEG00010014917)	JAK2 (ENSRFEG00010014972)	RCL1 (ENSRFEG00010015039)	AK3 (ENSRFEG00010015150)	CDC37L1 (ENSRFEG00010015324)	SPATA6L (ENSRFEG00010005120)	PLPP6 (ENSRFEG00010005138)	ENSRFEG00010005145	SLC1A1 (ENSRFEG00010005159)	GLIS3 (ENSRFEG00010005187)	RFX3 (ENSRFEG00010005210) ##22	ENSRFEG00010005258	ENSRFEG00010005315	KCNV2 (ENSRFEG00010005355)	VLDLR (ENSRFEG00010005438)	SMARCA2 (ENSRFEG00010005719)	DMRT2 (ENSRFEG00010005950)	DMRT3 (ENSRFEG00010006020)	DMRT1 (ENSRFEG00010006049)	KANK1 (ENSRFEG00010006153)	DOCK8 (ENSRFEG00010006288)	ENSRFEG00010006573	ENSRFEG00010006757	PGM5 (ENSRFEG00010006806)	TMEM252 (ENSRFEG00010006856)	PIP5K1B (ENSRFEG00010006963)
Microbat	MODERN SPECIES	1067	RIC1 (ENSMLUG00000002399)	PDCD1LG2 (ENSMLUG00000009533)	CD274 (ENSMLUG00000009607)	PLGRKT (ENSMLUG00000009582)	ENSMLUG00000009569	INSL6 (ENSMLUG00000007982)	JAK2 (ENSMLUG00000012756)	RCL1 (ENSMLUG00000009654)	AK3 (ENSMLUG00000017272)	CDC37L1 (ENSMLUG00000017270)	PLPP6 (ENSMLUG00000017269)	SPATA6L (ENSMLUG00000012996)	ENSMLUG00000012988	ENSMLUG00000014482	ENSMLUG00000030513	RFX3 (ENSMLUG00000013765) ##22	ENSMLUG00000022735	PUM3 (ENSMLUG00000002309)	KCNV2 (ENSMLUG00000002304)	VLDLR (ENSMLUG00000002294)	SMARCA2 (ENSMLUG00000002342)
Megabat	MODERN SPECIES	3453																RFX3 (ENSPVAG00000001088) ##22
Atlantogenata	ANCESTRAL SPECIES	68	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000163353	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b	ENSGT01050000248464
Afrotheria	ANCESTRAL SPECIES	145					ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896.m	ENSGT00940000156896.n	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b	ENSGT01050000248464	ENSGT00940000156639
Tenrec	MODERN SPECIES	8433																RFX3 (ENSETEG00000002475) ##22
Afrotheria_a	ANCESTRAL SPECIES	145					ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00900000143153	ENSGT00940000156896.m	ENSGT00940000156896.n	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00390000015476.d.b	ENSGT01050000248464	ENSGT00940000156639
Hyrax	MODERN SPECIES	7504																RFX3 (ENSPCAG00000015591) ##22
Elephant	MODERN SPECIES	593	ENSLAFG00000006436	MED22 (ENSLAFG00000002513)	SURF6 (ENSLAFG00000026419)	ABO (ENSLAFG00000010293)	INSL6 (ENSLAFG00000007479)	JAK2 (ENSLAFG00000007471)	RCL1 (ENSLAFG00000017495)	AK3 (ENSLAFG00000001126)	CDC37L1 (ENSLAFG00000001125)	SPATA6L (ENSLAFG00000001121)	PLPP6 (ENSLAFG00000001123)	SLC1A1 (ENSLAFG00000001120)	ENSLAFG00000026125	ENSLAFG00000029971	ENSLAFG00000031654	RFX3 (ENSLAFG00000021602) ##22	PUM3 (ENSLAFG00000017341)	KCNV2 (ENSLAFG00000017292)	VLDLR (ENSLAFG00000015211)	SMARCA2 (ENSLAFG00000014061)	DMRT2 (ENSLAFG00000008510)	DMRT3 (ENSLAFG00000028125)	ENSLAFG00000010638	ENSLAFG00000031278	ENSLAFG00000010633	DOCK8 (ENSLAFG00000010626)	ENSLAFG00000006679	PGM5 (ENSLAFG00000015785)	TMEM252 (ENSLAFG00000015792)	ENSLAFG00000029981	PABIR1 (ENSLAFG00000016843)
Xenarthra	ANCESTRAL SPECIES	76	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434.a	ENSGT00940000154434.b	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000160907	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b
Sloth	MODERN SPECIES	7968																RFX3 (ENSCHOG00000008113) ##22
Armadillo	MODERN SPECIES	1454	CD274 (ENSDNOG00000018655)	ENSDNOG00000042926	ENSDNOG00000036090	ENSDNOG00000001668	JAK2 (ENSDNOG00000008173)	RCL1 (ENSDNOG00000019911)	AK3 (ENSDNOG00000038787)	CDC37L1 (ENSDNOG00000015975)	PLPP6 (ENSDNOG00000015974)	SPATA6L (ENSDNOG00000038916)	SLC1A1 (ENSDNOG00000001798)	ENSDNOG00000042157	ENSDNOG00000035748	ENSDNOG00000042655	ENSDNOG00000012636	RFX3 (ENSDNOG00000018668) ##22	PUM3 (ENSDNOG00000008157)	KCNV2 (ENSDNOG00000041737)	VLDLR (ENSDNOG00000001086)	SMARCA2 (ENSDNOG00000006402)	ENSDNOG00000040306	ST8SIA4 (ENSDNOG00000046147)
Platypus	MODERN SPECIES	88	ERMP1 (ENSOANG00000010083)	RIC1 (ENSOANG00000010088)	ENSOANG00000010090	CD274 (ENSOANG00000010091)	PLGRKT (ENSOANG00000013191)	ENSOANG00000031851	JAK2 (ENSOANG00000010092)	RCL1 (ENSOANG00000013193)	AK3 (ENSOANG00000001505)	ENSOANG00000049559	CDC37L1 (ENSOANG00000001511)	ENSOANG00000036739	ENSOANG00000039420	SLC1A1 (ENSOANG00000013192)	GLIS3 (ENSOANG00000014997)	RFX3 (ENSOANG00000014996) ##22	ENSOANG00000043031	PUM3 (ENSOANG00000014995)	KCNV2 (ENSOANG00000014994)	VLDLR (ENSOANG00000014993)	SMARCA2 (ENSOANG00000008299)	ENSOANG00000008297	DMRT2 (ENSOANG00000008296)	DMRT3 (ENSOANG00000008295)	DMRT1 (ENSOANG00000036834)	KANK1 (ENSOANG00000008293)	DOCK8 (ENSOANG00000044143)	ENSOANG00000012519	ENSOANG00000040009	PGM5 (ENSOANG00000012517)	ENSOANG00000028420
Sauria	ANCESTRAL SPECIES	5	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126
Archelosauria	ANCESTRAL SPECIES	7	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b
Archosauria	ANCESTRAL SPECIES	31	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00910000144227.t	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126
Aves	DUPLICATION
Aves	ANCESTRAL SPECIES	45	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250
Neognathae	ANCESTRAL SPECIES	12	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250
Neognathae_b	ANCESTRAL SPECIES	5	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Passeriformes	ANCESTRAL SPECIES	7	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000162777.a.a.a.a	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Passeriformes_d	ANCESTRAL SPECIES	6	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000169000	ENSGT00940000155640	ENSGT00530000063404.a.k	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01100000265023	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000162777.a.a.a.a	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Flycatcher	MODERN SPECIES	561	ENSFALG00000010572	PLGRKT (ENSFALG00000010567)	ENSFALG00000026503	JAK2 (ENSFALG00000010563)	ENSFALG00000027655	ENSFALG00000010553	ENSFALG00000025956	AK3 (ENSFALG00000010543)	CDC37L1 (ENSFALG00000023426)	ENSFALG00000010531	ENSFALG00000010526	ENSFALG00000014597	SLC1A1 (ENSFALG00000010522)	GLIS3 (ENSFALG00000010519)	ENSFALG00000027595	RFX3 (ENSFALG00000010515) ##22	ENSFALG00000010512	PUM3 (ENSFALG00000010509)	KCNV2 (ENSFALG00000010508)	VLDLR (ENSFALG00000010477)	SMARCA2 (ENSFALG00000010416)	ENSFALG00000023612	DMRT2 (ENSFALG00000010393)	DMRT3 (ENSFALG00000010391)	DMRT1 (ENSFALG00000010388)	KANK1 (ENSFALG00000010385)	DOCK8 (ENSFALG00000010346)	ENSFALG00000010329	ENSFALG00000010321	ENSFALG00000023216	ENSFALG00000025792
Passeriformes_g	ANCESTRAL SPECIES	7	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a.k	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00960000189358	ENSGT00940000155319.g.b.a.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01100000265023	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000162777.a.a.a.a	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Passeroidea	ANCESTRAL SPECIES	23	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000169000	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a.k	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00960000189358	ENSGT00940000155319.g.b.a.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01100000265023	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000162777.a.a.a.a	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Common canary	MODERN SPECIES	25	ADAMTSL1 (ENSSCAG00000001544)	SH3GL2 (ENSSCAG00000001580)	BNC2 (ENSSCAG00000001590)	CCDC171 (ENSSCAG00000001614)	PSIP1 (ENSSCAG00000001649)	SNAPC3 (ENSSCAG00000001672)	TTC39B (ENSSCAG00000001680)	FREM1 (ENSSCAG00000001715)	CER1 (ENSSCAG00000001779)	ZDHHC21 (ENSSCAG00000001780)	NFIB (ENSSCAG00000001799)	MPDZ (ENSSCAG00000001857)	TYRP1 (ENSSCAG00000001949)	PTPRD (ENSSCAG00000002170) ##37	ENSSCAG00000003109	ENSSCAG00000003133 ##22	ENSSCAG00000003143	PUM3 (ENSSCAG00000003162)	KCNV2 (ENSSCAG00000003167)	VLDLR (ENSSCAG00000003171)	SMARCA2 (ENSSCAG00000003181)	DMRT2 (ENSSCAG00000003191)	DMRT3 (ENSSCAG00000003195)	DMRT1 (ENSSCAG00000003198)	ENSSCAG00000003201	KANK1 (ENSSCAG00000003206)	DOCK8 (ENSSCAG00000003379)	ENSSCAG00000004163	PGM5 (ENSSCAG00000004248)	TMEM252 (ENSSCAG00000004252)	ENSSCAG00000004262
Zebra finch	MODERN SPECIES	104	RIC1 (ENSTGUG00000005013)	PDCD1LG2 (ENSTGUG00000025704)	ENSTGUG00000005033	ENSTGUG00000005041	JAK2 (ENSTGUG00000005043)	RCL1 (ENSTGUG00000005138)	AK3 (ENSTGUG00000005155)	CDC37L1 (ENSTGUG00000005189)	ENSTGUG00000029693	ENSTGUG00000019342	ENSTGUG00000005203	SLC1A1 (ENSTGUG00000005214)	GLIS3 (ENSTGUG00000005266)	ENSTGUG00000024012	ENSTGUG00000022949	RFX3 (ENSTGUG00000005287) ##22	ENSTGUG00000005327	PUM3 (ENSTGUG00000005339)	KCNV2 (ENSTGUG00000018853)	ENSTGUG00000005381	VLDLR (ENSTGUG00000005386)	SMARCA2 (ENSTGUG00000005460)	DMRT2 (ENSTGUG00000005515)	DMRT3 (ENSTGUG00000005521)	DMRT1 (ENSTGUG00000005524)	KANK1 (ENSTGUG00000005531)	DOCK8 (ENSTGUG00000005550)	ENSTGUG00000005631	PGM5 (ENSTGUG00000005644)	TMEM252 (ENSTGUG00000005666)	MAP1B (ENSTGUG00000005669)
Medium ground finch	MODERN SPECIES	165																ENSGFOG00000008755 ##22	ENSGFOG00000008784	PUM3 (ENSGFOG00000008804)	KCNV2 (ENSGFOG00000008864)	VLDLR (ENSGFOG00000009041)	SMARCA2 (ENSGFOG00000011122)	DMRT2 (ENSGFOG00000011147)	KANK1 (ENSGFOG00000011149)	ENSGFOG00000011159	ENSGFOG00000011163	ENSGFOG00000011169	ENSGFOG00000011177	PGM5 (ENSGFOG00000011183)	ENSGFOG00000011192	ENSGFOG00000011197	MRPS27 (ENSGFOG00000011203)
Great tit	MODERN SPECIES	642	ENSPMJG00000016226	ERMP1 (ENSPMJG00000016217)	RIC1 (ENSPMJG00000016216)	PDCD1LG2 (ENSPMJG00000016214)	CD274 (ENSPMJG00000016213)	PLGRKT (ENSPMJG00000016212)	ENSPMJG00000016211	JAK2 (ENSPMJG00000016210)	RCL1 (ENSPMJG00000016208)	AK3 (ENSPMJG00000016207)	CDC37L1 (ENSPMJG00000016206)	ENSPMJG00000016205	ENSPMJG00000016204	SLC1A1 (ENSPMJG00000016203)	GLIS3 (ENSPMJG00000016202)	RFX3 (ENSPMJG00000016201) ##22	ENSPMJG00000016200	PUM3 (ENSPMJG00000016199)	KCNV2 (ENSPMJG00000016198)	VLDLR (ENSPMJG00000016197)	SMARCA2 (ENSPMJG00000016196)	DMRT2 (ENSPMJG00000016193)	DMRT1 (ENSPMJG00000016192)	KANK1 (ENSPMJG00000016191)	DOCK8 (ENSPMJG00000016190)	ENSPMJG00000016189	ENSPMJG00000016188	PGM5 (ENSPMJG00000016187)	MAP1B (ENSPMJG00000016186)	MRPS27 (ENSPMJG00000016185)	ZNF366 (ENSPMJG00000016182)
Neognathae_c	ANCESTRAL SPECIES	2	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a	ENSGT00390000007246
Kakapo	MODERN SPECIES	19	GLDC (ENSSHBG00005017361)	UHRF2 (ENSSHBG00005017370)	KIAA2026 (ENSSHBG00005017376)	MLANA (ENSSHBG00005017380)	ENSSHBG00005017383	ERMP1 (ENSSHBG00005017385)	RIC1 (ENSSHBG00005017400)	PDCD1LG2 (ENSSHBG00005017476)	ENSSHBG00005017481	JAK2 (ENSSHBG00005017499)	RCL1 (ENSSHBG00005017541)	SLC1A1 (ENSSHBG00005017548)	CDC37L1 (ENSSHBG00005017553)	AK3 (ENSSHBG00005017556)	GLIS3 (ENSSHBG00005017563)	ENSSHBG00005017571 ##22	ENSSHBG00005017578	PUM3 (ENSSHBG00005017598)	KCNV2 (ENSSHBG00005017626)	VLDLR (ENSSHBG00005017636)	SMARCA2 (ENSSHBG00005017989)	DMRT2 (ENSSHBG00005020185)	DMRT3 (ENSSHBG00005020188)	DMRT1 (ENSSHBG00005020193)	ENSSHBG00005020196	ENSSHBG00005020200	DOCK8 (ENSSHBG00005020306)	ENSSHBG00005020597	PGM5 (ENSSHBG00005020602)	TMEM252 (ENSSHBG00005020607)	ENSSHBG00005020611
Golden eagle	MODERN SPECIES	91	KIAA2026 (ENSACCG00020013976)	MLANA (ENSACCG00020013991)	ENSACCG00020014001	ERMP1 (ENSACCG00020014143)	RIC1 (ENSACCG00020014383)	PDCD1LG2 (ENSACCG00020014424)	ENSACCG00020014444	PLGRKT (ENSACCG00020014461)	ENSACCG00020014475	JAK2 (ENSACCG00020014493)	RCL1 (ENSACCG00020014540)	AK3 (ENSACCG00020014563)	CDC37L1 (ENSACCG00020014575)	SLC1A1 (ENSACCG00020014593)	GLIS3 (ENSACCG00020014613)	RFX3 (ENSACCG00020014653) ##22	ENSACCG00020014683	PUM3 (ENSACCG00020014700)	KCNV2 (ENSACCG00020014716)	VLDLR (ENSACCG00020014749)	SMARCA2 (ENSACCG00020014838)	DMRT2 (ENSACCG00020014901)	DMRT3 (ENSACCG00020014910)	DMRT1 (ENSACCG00020014930)	ENSACCG00020014951	ENSACCG00020014971	DOCK8 (ENSACCG00020016450)	ENSACCG00020016750	PGM5 (ENSACCG00020016754)	TMEM252 (ENSACCG00020016759)	ENSACCG00020016763
Galloanserae	ANCESTRAL SPECIES	11	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a
Anatidae	ANCESTRAL SPECIES	20	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a	ENSGT00390000007246
Duck	MODERN SPECIES	4281	MLANA (ENSAPLG00000003877)	ENSAPLG00000003923	ENSAPLG00000030581	ENSAPLG00000028854	RIC1 (ENSAPLG00000004154)	PDCD1LG2 (ENSAPLG00000004593)	ENSAPLG00000004669	PLGRKT (ENSAPLG00000018947)	ENSAPLG00000011419	JAK2 (ENSAPLG00000004748)	RCL1 (ENSAPLG00000006031)	AK3 (ENSAPLG00000006356)	CDC37L1 (ENSAPLG00000006614)	SLC1A1 (ENSAPLG00000015022)	GLIS3 (ENSAPLG00000014844)	RFX3 (ENSAPLG00000011096) ##22	ENSAPLG00000019362	PUM3 (ENSAPLG00000002920)	KCNV2 (ENSAPLG00000018126)	ENSAPLG00000015474	SMARCA2 (ENSAPLG00000013873)	DMRT2 (ENSAPLG00000013872)	DMRT3 (ENSAPLG00000013743)	KANK1 (ENSAPLG00000020411)	ENSAPLG00000012724	ENSAPLG00000017480	ENSAPLG00000025062	ENSAPLG00000012182	TMEM252 (ENSAPLG00000010990)	PGM5 (ENSAPLG00000011043)	MAP1B (ENSAPLG00000030918)
Pink-footed goose	MODERN SPECIES	236														SLC1A1 (ENSABRG00000009175)	GLIS3 (ENSABRG00000009214)	ENSABRG00000009271 ##22	ENSABRG00000009339	PUM3 (ENSABRG00000009367)	KCNV2 (ENSABRG00000009444)	VLDLR (ENSABRG00000009580)	SMARCA2 (ENSABRG00000010971)
Phasianidae	ANCESTRAL SPECIES	5	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a.db.b	ENSGT00940000154886.a.a.db.a	ENSGT00940000155876.e.a	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a	ENSGT00390000007246
Japanese quail	MODERN SPECIES	699	UHRF2 (ENSCJPG00005003255)	KIAA2026 (ENSCJPG00005003247)	MLANA (ENSCJPG00005003245)	ENSCJPG00005003242	ERMP1 (ENSCJPG00005003237)	RIC1 (ENSCJPG00005003232)	PDCD1LG2 (ENSCJPG00005003231)	ENSCJPG00005003230	ENSCJPG00005003229	JAK2 (ENSCJPG00005003214)	RCL1 (ENSCJPG00005003205)	AK3 (ENSCJPG00005003204)	CDC37L1 (ENSCJPG00005003200)	SLC1A1 (ENSCJPG00005003195)	GLIS3 (ENSCJPG00005003188)	RFX3 (ENSCJPG00005003180) ##22	PUM3 (ENSCJPG00005003170)	KCNV2 (ENSCJPG00005003166)	VLDLR (ENSCJPG00005002212)	SMARCA2 (ENSCJPG00005002199)	DMRT2 (ENSCJPG00005002194)	DMRT3 (ENSCJPG00005002191)	DMRT1 (ENSCJPG00005002189)	KANK1 (ENSCJPG00005002171)	DOCK8 (ENSCJPG00005002158)	ENSCJPG00005002115	PGM5 (ENSCJPG00005002107)	TMEM252 (ENSCJPG00005002105)	MAP1B (ENSCJPG00005002102)	MRPS27 (ENSCJPG00005002094)	PTCD2 (ENSCJPG00005002087)
Phasianidae_b	ANCESTRAL SPECIES	5	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000154396.a	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b.e ##22	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000154886.a.a.db.a	ENSGT00940000155876.e.a	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000155897.mb.a	ENSGT00390000007246	ENSGT00390000009329	ENSGT00940000155498
Chicken	MODERN SPECIES	131	UHRF2 (ENSGALG00010012965)	KIAA2026 (ENSGALG00010012952)	MLANA (ENSGALG00010012923)	ENSGALG00010012919	ERMP1 (ENSGALG00010012904)	RIC1 (ENSGALG00010012889)	PDCD1LG2 (ENSGALG00010013312)	CD274 (ENSGALG00010012871)	RLN3 (ENSGALG00010012847)	JAK2 (ENSGALG00010012833)	RCL1 (ENSGALG00010011222)	AK3 (ENSGALG00010011143)	CDC37L1 (ENSGALG00010011133)	SLC1A1 (ENSGALG00010011937)	GLIS3 (ENSGALG00010010147)	RFX3 (ENSGALG00010011873) ##22	PUM3 (ENSGALG00010011384)	KCNV2 (ENSGALG00010010198)	VLDLR (ENSGALG00010011837)	SMARCA2 (ENSGALG00010011808)	DMRT2 (ENSGALG00010011482)	ENSGALG00010011462	DMRT1 (ENSGALG00010011437)	KANK1 (ENSGALG00010011351)	DOCK8 (ENSGALG00010011311)	CBWD1 (ENSGALG00010011287)	PGM5 (ENSGALG00010011887)	TMEM252 (ENSGALG00010011444)	MAP1B (ENSGALG00010011681)	MRPS27 (ENSGALG00010011649)	PTCD2 (ENSGALG00010011572)
African ostrich	MODERN SPECIES	923															GLIS3 (ENSSCUG00000016965)	RFX3 (ENSSCUG00000016961) ##22	ENSSCUG00000016959	PUM3 (ENSSCUG00000016947)	VLDLR (ENSSCUG00000016871)	ENSSCUG00000016608
Aves	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Neognathae	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Galloanserae	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Anatidae	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Pink-footed goose	MODERN SPECIES	542																ENSABRG00000015419 ##22
Neognathae_b	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Neognathae_c	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Kakapo	MODERN SPECIES	4	ENSSHBG00005001025	ENSSHBG00005001023	ENSSHBG00005001020	ENSSHBG00005001017	ENSSHBG00005001015	ENSSHBG00005001012	ENSSHBG00005001010	ENSSHBG00005001009	ENSSHBG00005001006	ENSSHBG00005001002	ENSSHBG00005001000	ENSSHBG00005000997	ENSSHBG00005000987	ENSSHBG00005000975	ENSSHBG00005000971	ENSSHBG00005011326 ##22	ENSSHBG00005011157	ENSSHBG00005011098	ENSSHBG00005011077	ENSSHBG00005011005	ENSSHBG00005010945	ENSSHBG00005010876	ENSSHBG00005010841	CFDP1 (ENSSHBG00005010819)	ENSSHBG00005010713	ENSSHBG00005010393	ENSSHBG00005010325	ENSSHBG00005010247	ENSSHBG00005010154	ENSSHBG00005010115	ENSSHBG00005010003
Passeriformes	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Passeriformes_g	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Passeroidea	ANCESTRAL SPECIES																	ENSGT01050000244879.a.a.b.f ##22
Common canary	MODERN SPECIES	125																ENSSCAG00000015568 ##22
Medium ground finch	MODERN SPECIES	409																ENSGFOG00000006162 ##22
Australian saltwater crocodile	MODERN SPECIES	67	UHRF2 (ENSCPRG00005004283)	KIAA2026 (ENSCPRG00005004297)	ERMP1 (ENSCPRG00005004304)	RIC1 (ENSCPRG00005004338)	PDCD1LG2 (ENSCPRG00005004350)	ENSCPRG00005004356	PLGRKT (ENSCPRG00005004366)	ENSCPRG00005004371	JAK2 (ENSCPRG00005004373)	RCL1 (ENSCPRG00005004387)	AK3 (ENSCPRG00005004395)	CDC37L1 (ENSCPRG00005004396)	SPATA6L (ENSCPRG00005004407)	SLC1A1 (ENSCPRG00005004424)	GLIS3 (ENSCPRG00005004466)	RFX3 (ENSCPRG00005004493) ##22	ENSCPRG00005004519	PUM3 (ENSCPRG00005004547)	KCNV2 (ENSCPRG00005004751)	VLDLR (ENSCPRG00005004758)	ENSCPRG00005004774	SMARCA2 (ENSCPRG00005004803)	DMRT2 (ENSCPRG00005004868)	DMRT3 (ENSCPRG00005004879)	DMRT1 (ENSCPRG00005004893)	KANK1 (ENSCPRG00005004939)	DOCK8 (ENSCPRG00005004968)	ENSCPRG00005005028	PGM5 (ENSCPRG00005005087)	TMEM252 (ENSCPRG00005005520)	PIP5K1B (ENSCPRG00005005542)
Cryptodira	ANCESTRAL SPECIES	48	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00950000185504	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b
Testudinoidea	ANCESTRAL SPECIES	7	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00950000185504	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b
Testudinidae	ANCESTRAL SPECIES	15	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757.c	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a.ib	ENSGT00940000155876	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000158126	ENSGT00390000005250
Abingdon island giant tortoise	MODERN SPECIES	2200												ENSCABG00000019356	SLC1A1 (ENSCABG00000019357)	ENSCABG00000019358	GLIS3 (ENSCABG00000019359)	RFX3 (ENSCABG00000019365) ##22	ENSCABG00000019407	ENSCABG00000019410	KCNV2 (ENSCABG00000019411)	VLDLR (ENSCABG00000019415)	SMARCA2 (ENSCABG00000019732)	ENSCABG00000022392	DMRT2 (ENSCABG00000022399)	DMRT3 (ENSCABG00000022401)	DMRT1 (ENSCABG00000022413)	ENSCABG00000022432	ENSCABG00000022433	ENSCABG00000022434	ENSCABG00000022437	ENSCABG00000022438	ENSCABG00000022441
Goode s thornscrub tortoise	MODERN SPECIES	20	MLANA (ENSGEVG00005017623)	ERMP1 (ENSGEVG00005017610)	RIC1 (ENSGEVG00005017573)	PDCD1LG2 (ENSGEVG00005017549)	CD274 (ENSGEVG00005017525)	PLGRKT (ENSGEVG00005017508)	ENSGEVG00005017487	JAK2 (ENSGEVG00005017459)	RCL1 (ENSGEVG00005017434)	AK3 (ENSGEVG00005017423)	CDC37L1 (ENSGEVG00005017405)	SPATA6L (ENSGEVG00005017368)	SLC1A1 (ENSGEVG00005017274)	ENSGEVG00005017260	GLIS3 (ENSGEVG00005017217)	RFX3 (ENSGEVG00005017166) ##22	ENSGEVG00005017017	ENSGEVG00005016771	KCNV2 (ENSGEVG00005016696)	SMARCA2 (ENSGEVG00005015950)	DMRT2 (ENSGEVG00005015890)	DMRT3 (ENSGEVG00005015865)	DMRT1 (ENSGEVG00005015585)	KANK1 (ENSGEVG00005015437)	DOCK8 (ENSGEVG00005015343)	ENSGEVG00005015265	PGM5 (ENSGEVG00005014982)	TMEM252 (ENSGEVG00005014919)	PIP5K1B (ENSGEVG00005014815)	FXN (ENSGEVG00005014780)	TJP2 (ENSGEVG00005014736)
Emydidae	ANCESTRAL SPECIES	20	ENSGT00390000009531	ENSGT00940000164450	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00960000189645	ENSGT00940000154886.a.a	ENSGT00950000185504	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000158126	ENSGT00390000005250
Three-toed box turtle	MODERN SPECIES	50	ENSTMTG00000016945	ENSTMTG00000016905	ERMP1 (ENSTMTG00000016873)	RIC1 (ENSTMTG00000016776)	PDCD1LG2 (ENSTMTG00000016752)	CD274 (ENSTMTG00000016745)	PLGRKT (ENSTMTG00000016710)	ENSTMTG00000016706	JAK2 (ENSTMTG00000016660)	RCL1 (ENSTMTG00000016634)	AK3 (ENSTMTG00000016623)	CDC37L1 (ENSTMTG00000016607)	SPATA6L (ENSTMTG00000016584)	SLC1A1 (ENSTMTG00000016551)	GLIS3 (ENSTMTG00000016537)	RFX3 (ENSTMTG00000016347) ##22	ENSTMTG00000016298	PUM3 (ENSTMTG00000016264)	KCNV2 (ENSTMTG00000016251)	VLDLR (ENSTMTG00000016110)	SMARCA2 (ENSTMTG00000016037)	DMRT2 (ENSTMTG00000016004)	DMRT3 (ENSTMTG00000015991)	DMRT1 (ENSTMTG00000015977)	ENSTMTG00000015959	KANK1 (ENSTMTG00000015933)	ENSTMTG00000015924	DOCK8 (ENSTMTG00000006799)	ENSTMTG00000006284	PGM5 (ENSTMTG00000006248)	TMEM252 (ENSTMTG00000006221)
painted turtle	MODERN SPECIES	15	ENSCPBG00000025493	ENSCPBG00000025492	ERMP1 (ENSCPBG00000025490)	RIC1 (ENSCPBG00000025489)	PDCD1LG2 (ENSCPBG00000025487)	CD274 (ENSCPBG00000025486)	PLGRKT (ENSCPBG00000025485)	ENSCPBG00000025484	JAK2 (ENSCPBG00000025483)	RCL1 (ENSCPBG00000025481)	AK3 (ENSCPBG00000025480)	CDC37L1 (ENSCPBG00000025479)	SPATA6L (ENSCPBG00000025478)	SLC1A1 (ENSCPBG00000025475)	GLIS3 (ENSCPBG00000025474)	RFX3 (ENSCPBG00000025473) ##22	ENSCPBG00000025471	PUM3 (ENSCPBG00000025470)	KCNV2 (ENSCPBG00000025469)	VLDLR (ENSCPBG00000025468)	SMARCA2 (ENSCPBG00000025463)	DMRT2 (ENSCPBG00000025462)	DMRT3 (ENSCPBG00000025461)	DMRT1 (ENSCPBG00000025458)	KANK1 (ENSCPBG00000025457)	ENSCPBG00000025452	DOCK8 (ENSCPBG00000025439)	ENSCPBG00000025429	PGM5 (ENSCPBG00000025365)	TMEM252 (ENSCPBG00000025354)	PIP5K1B (ENSCPBG00000025343)
Chinese turtle	MODERN SPECIES	105																RFX3 (ENSPSIG00000005608) ##22
Lepidosauria	ANCESTRAL SPECIES	1	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00940000161430	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126	ENSGT00390000005250
Episquamata	ANCESTRAL SPECIES	6	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126	ENSGT00390000005250
Toxicofera	ANCESTRAL SPECIES	6	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126	ENSGT00390000005250
Elapidae	ANCESTRAL SPECIES	7	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00950000186013	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126	ENSGT00390000005250
Indian cobra	MODERN SPECIES	1	KDM4C (ENSNNAG00000013058)	GLDC (ENSNNAG00000013176)	UHRF2 (ENSNNAG00000013890)	KIAA2026 (ENSNNAG00000014777)	ERMP1 (ENSNNAG00000014841)	RIC1 (ENSNNAG00000015205)	PDCD1LG2 (ENSNNAG00000015251)	PLGRKT (ENSNNAG00000015298)	JAK2 (ENSNNAG00000015311)	RCL1 (ENSNNAG00000015339)	AK3 (ENSNNAG00000015359)	CDC37L1 (ENSNNAG00000015380)	SLC1A1 (ENSNNAG00000015451)	ENSNNAG00000015513	GLIS3 (ENSNNAG00000015518)	RFX3 (ENSNNAG00000015581) ##22	ENSNNAG00000015896	ENSNNAG00000015953	ENSNNAG00000015978	KCNV2 (ENSNNAG00000016029)	VLDLR (ENSNNAG00000016101)	SMARCA2 (ENSNNAG00000016662)	DMRT2 (ENSNNAG00000017421)	DMRT3 (ENSNNAG00000017425)	DMRT1 (ENSNNAG00000017439)	KANK1 (ENSNNAG00000017462)	ENSNNAG00000017470	ENSNNAG00000017479	ENSNNAG00000017496	ENSNNAG00000017514	ENSNNAG00000017526
Elapidae_a	ANCESTRAL SPECIES	101	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489
Acanthophiinae	ANCESTRAL SPECIES	9	ENSGT00940000154930.a	ENSGT00390000017970	ENSGT00390000008296.b.a.a	ENSGT00390000011483	ENSGT00530000063839.f	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876.m	ENSGT00950000185125	ENSGT00640000091523	ENSGT00940000157140.b.b	ENSGT00940000164995	ENSGT00940000158126
Mainland tiger snake	MODERN SPECIES	1	UHRF2 (ENSNSUG00000019944)	KIAA2026 (ENSNSUG00000019940)	ENSNSUG00000019939	ENSNSUG00000019938	RIC1 (ENSNSUG00000019937)	PDCD1LG2 (ENSNSUG00000019936)	PLGRKT (ENSNSUG00000019935)	JAK2 (ENSNSUG00000019934)	ENSNSUG00000019932	ENSNSUG00000019931	AK3 (ENSNSUG00000019930)	CDC37L1 (ENSNSUG00000019929)	SPATA6L (ENSNSUG00000019928)	SLC1A1 (ENSNSUG00000019926)	GLIS3 (ENSNSUG00000019925)	RFX3 (ENSNSUG00000019919) ##22	ENSNSUG00000019918	PUM3 (ENSNSUG00000019917)	KCNV2 (ENSNSUG00000019916)	VLDLR (ENSNSUG00000019901)	SMARCA2 (ENSNSUG00000018108)	DMRT2 (ENSNSUG00000018057)	DMRT3 (ENSNSUG00000018056)	DMRT1 (ENSNSUG00000018051)	KANK1 (ENSNSUG00000018050)	DOCK8 (ENSNSUG00000018049)	ENSNSUG00000018048	ENSNSUG00000018047	PGM5 (ENSNSUG00000018044)	TMEM252 (ENSNSUG00000018038)	PIP5K1B (ENSNSUG00000018035)
Eastern brown snake	MODERN SPECIES	23	PTPRD (ENSPTXG00000006046) ##37	KDM4C (ENSPTXG00000018744)	GLDC (ENSPTXG00000018745)	UHRF2 (ENSPTXG00000018746)	KIAA2026 (ENSPTXG00000018747)	ERMP1 (ENSPTXG00000018748)	RIC1 (ENSPTXG00000018749)	PDCD1LG2 (ENSPTXG00000018750)	PLGRKT (ENSPTXG00000018751)	JAK2 (ENSPTXG00000018752)	RCL1 (ENSPTXG00000018760)	AK3 (ENSPTXG00000018762)	CDC37L1 (ENSPTXG00000018763)	SLC1A1 (ENSPTXG00000018764)	GLIS3 (ENSPTXG00000018766)	RFX3 (ENSPTXG00000018767) ##22	ENSPTXG00000018793	PUM3 (ENSPTXG00000018794)	KCNV2 (ENSPTXG00000018795)	VLDLR (ENSPTXG00000018796)	SMARCA2 (ENSPTXG00000018801)	DMRT2 (ENSPTXG00000018805)	DMRT3 (ENSPTXG00000018806)	DMRT1 (ENSPTXG00000018807)	KANK1 (ENSPTXG00000018808)	DOCK8 (ENSPTXG00000018810)	ENSPTXG00000018860	ENSPTXG00000018861	PGM5 (ENSPTXG00000018862)	TMEM252 (ENSPTXG00000018863)	PIP5K1B (ENSPTXG00000018864)
Blue-lipped sea krait	MODERN SPECIES	7481																RFX3 (ENSLLTG00000006640) ##22
Lizard	MODERN SPECIES	1	ERMP1 (ENSACAG00000004052)	RIC1 (ENSACAG00000003988)	PDCD1LG2 (ENSACAG00000029075)	PLGRKT (ENSACAG00000003966)	ENSACAG00000024061	ENSACAG00000042874	JAK2 (ENSACAG00000003673)	RCL1 (ENSACAG00000003640)	AK3 (ENSACAG00000003605)	CDC37L1 (ENSACAG00000003578)	SPATA6L (ENSACAG00000029209)	ENSACAG00000043625	SLC1A1 (ENSACAG00000003433)	ENSACAG00000036408	GLIS3 (ENSACAG00000003374)	RFX3 (ENSACAG00000003262) ##22	ENSACAG00000035469	ENSACAG00000003227	PUM3 (ENSACAG00000003174)	KCNV2 (ENSACAG00000003138)	VLDLR (ENSACAG00000003015)	SMARCA2 (ENSACAG00000002423)	DMRT2 (ENSACAG00000002411)	DMRT3 (ENSACAG00000002401)	DMRT1 (ENSACAG00000002356)	KANK1 (ENSACAG00000002270)	ENSACAG00000036574	DOCK8 (ENSACAG00000001924)	ENSACAG00000001658	ENSACAG00000008130	PGM5 (ENSACAG00000001410)
Laterata	ANCESTRAL SPECIES	8															ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a.i	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000161645.a.e	ENSGT00940000158126	ENSGT00390000005250	ENSGT00940000156639
Common wall lizard	MODERN SPECIES	8	ENSPMRG00000022144	ENSPMRG00000022143	ENSPMRG00000022138	ENSPMRG00000022134	TMEM52B (ENSPMRG00000022129)	ENSPMRG00000022125	ENSPMRG00000022122	ENSPMRG00000022112	POSTN (ENSPMRG00000021938)	SUPT20H (ENSPMRG00000021871)	EXOSC8 (ENSPMRG00000021840)	ALG5 (ENSPMRG00000021829)	TMEM39A (ENSPMRG00000021818)	ENSPMRG00000021781	GLIS3 (ENSPMRG00000021747)	RFX3 (ENSPMRG00000021654) ##22	ENSPMRG00000021639	PUM3 (ENSPMRG00000021630)	KCNV2 (ENSPMRG00000021625)	ENSPMRG00000021621	VLDLR (ENSPMRG00000021598)	ENSPMRG00000021578	SMARCA2 (ENSPMRG00000021519)	DMRT2 (ENSPMRG00000021499)	DMRT3 (ENSPMRG00000021491)	DMRT1 (ENSPMRG00000021487)	KANK1 (ENSPMRG00000021475)	CDKN2B (ENSPMRG00000021467)	CDKN2A (ENSPMRG00000021465)	MTAP (ENSPMRG00000021457)	ENSPMRG00000021447
Argentine black and white tegu	MODERN SPECIES	25	SLC1A1 (ENSSMRG00000012291)	SPATA6L (ENSSMRG00000012298)	CDC37L1 (ENSSMRG00000012299)	AK3 (ENSSMRG00000012300)	RCL1 (ENSSMRG00000012305)	JAK2 (ENSSMRG00000012306)	ENSSMRG00000012307	PLGRKT (ENSSMRG00000012308)	PDCD1LG2 (ENSSMRG00000012319)	RIC1 (ENSSMRG00000012320)	ERMP1 (ENSSMRG00000012324)	MLANA (ENSSMRG00000012325)	KIAA2026 (ENSSMRG00000012326)	ENSSMRG00000012349	GLIS3 (ENSSMRG00000012362)	RFX3 (ENSSMRG00000012376) ##22	ENSSMRG00000012379	PUM3 (ENSSMRG00000012380)	KCNV2 (ENSSMRG00000012381)	VLDLR (ENSSMRG00000012387)	SMARCA2 (ENSSMRG00000012396)	ENSSMRG00000012401	DMRT2 (ENSSMRG00000012412)	DMRT3 (ENSSMRG00000012413)	DMRT1 (ENSSMRG00000012418)	KANK1 (ENSSMRG00000012463)	DOCK8 (ENSSMRG00000012483)	ENSSMRG00000016054	ENSSMRG00000016056	PGM5 (ENSSMRG00000016057)	ENSSMRG00000016058
tuatara	MODERN SPECIES	1196													ENSSPUG00000001985	ENSSPUG00000001966	ENSSPUG00000001944	RFX3 (ENSSPUG00000001791) ##22	ENSSPUG00000001722	PUM3 (ENSSPUG00000001707)	KCNV2 (ENSSPUG00000001702)	VLDLR (ENSSPUG00000001691)	SMARCA2 (ENSSPUG00000001629)
Anura	ANCESTRAL SPECIES	29	ENSGT00390000008296.b.b	ENSGT00390000011483	ENSGT00390000009531	ENSGT00530000063839	ENSGT00390000002955	ENSGT00940000161373	ENSGT00390000000375	ENSGT00940000154434	ENSGT00940000155640	ENSGT00530000063404.a	ENSGT00940000155120	ENSGT00390000013443.d	ENSGT00530000063821.b.b	ENSGT00940000155397.b	ENSGT00940000156896	ENSGT01050000244879.a.a.b ##22	ENSGT00940000164013	ENSGT00390000015757	ENSGT00940000157438	ENSGT00940000155460	ENSGT00940000154821.b	ENSGT00940000156282.a.a	ENSGT00940000160420	ENSGT00940000156489	ENSGT00940000154886.a.a	ENSGT00940000155876	ENSGT00640000091523	ENSGT00940000164556	ENSGT00940000163497	ENSGT00940000157140.a	ENSGT00940000158126
Frog	MODERN SPECIES		fxn (ENSXETG00000039175)	mlana (ENSXETG00000037374)	ermp1 (ENSXETG00000000577)	ric1 (ENSXETG00000000582)	pdcd1lg2 (ENSXETG00000040791)	ENSXETG00000036720	plgrkt (ENSXETG00000000587)	jak2 (ENSXETG00000000586)	ENSXETG00000042090	rcl1 (ENSXETG00000000592)	ak3 (ENSXETG00000000588)	cdc37l1 (ENSXETG00000000595)	spata6l (ENSXETG00000030483)	slc1a1 (ENSXETG00000011685)	glis3 (ENSXETG00000011692)	rfx3 (ENSXETG00000011698) ##22	crygbl.2 (ENSXETG00000048659)	carm1p1 (ENSXETG00000036672)	pum3 (ENSXETG00000011707)	kcnv2 (ENSXETG00000011708)	vldlr (ENSXETG00000011709)	smarca2 (ENSXETG00000015299)	dmrt2 (ENSXETG00000033983)	dmrt3 (ENSXETG00000015285)	dmrt1 (ENSXETG00000002277)	kank1 (ENSXETG00000002278)	dock8 (ENSXETG00000001648)	cbwd2 (ENSXETG00000001656)	cbwd1.1 (ENSXETG00000001666)	XB5815362 [provisional:cyp2j6] (ENSXETG00000001660)	foxd4l1.1 (ENSXETG00000001667)
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000001414	PLGRKT (ENSLLEG00000001384)	ENSLLEG00000001371	JAK2 (ENSLLEG00000001323)	ENSLLEG00000001296	RCL1 (ENSLLEG00000001251)	ENSLLEG00000001238	AK3 (ENSLLEG00000001204)	CDC37L1 (ENSLLEG00000001174)	SPATA6L (ENSLLEG00000001082)	SLC1A1 (ENSLLEG00000001013)	ENSLLEG00000000928	GLIS3 (ENSLLEG00000000897)	ENSLLEG00000000876	ENSLLEG00000000868	RFX3 (ENSLLEG00000000718) ##22	PUM3 (ENSLLEG00000000665)	KCNV2 (ENSLLEG00000000652)	VLDLR (ENSLLEG00000000597)	ENSLLEG00000000580	SMARCA2 (ENSLLEG00000000350)	ENSLLEG00000000280	ENSLLEG00000000269	ENSLLEG00000000229	DMRT2 (ENSLLEG00000000206)	ENSLLEG00000000201	DMRT3 (ENSLLEG00000000195)	DMRT1 (ENSLLEG00000000180)	ENSLLEG00000000168	KANK1 (ENSLLEG00000000147)	DOCK8 (ENSLLEG00000000077)
Coelacanth	MODERN SPECIES	1155																RFX3 (ENSLACG00000011846) ##22	ENSLACG00000009739	PUM3 (ENSLACG00000008312)	KCNV2 (ENSLACG00000007982)	VLDLR (ENSLACG00000006989)	ENSLACG00000000879
Elephant shark	MODERN SPECIES	1509	ENSCMIG00000007945	ADAMTSL1 (ENSCMIG00000007951)	ENSCMIG00000007955	ENSCMIG00000007958	ENSCMIG00000007960	ENSCMIG00000007962	plin2 (ENSCMIG00000007964)	elavl2 (ENSCMIG00000007974)	CAAP1 (ENSCMIG00000007989)	plaa (ENSCMIG00000007998)	ENSCMIG00000008011	ENSCMIG00000008013	ENSCMIG00000008018	ENSCMIG00000008032	GLIS3 (ENSCMIG00000008035)	rfx3 (ENSCMIG00000008108) ##22	ENSCMIG00000008233	pum3 (ENSCMIG00000008286)	KCNV2 (ENSCMIG00000008387)	vldlr (ENSCMIG00000008511)	ENSCMIG00000009053	ENSCMIG00000009311	ENSCMIG00000009379	dmrt2a (ENSCMIG00000009380)	dmrt3a (ENSCMIG00000009382)	DMRT1 (ENSCMIG00000009384)	KANK1 (ENSCMIG00000009393)	DOCK8 (ENSCMIG00000009549)	ENSCMIG00000009762	cbwd (ENSCMIG00000009766)	foxd5 (ENSCMIG00000009768)