Rodentia_A ANCESTRAL SPECIES 7 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000159777 ENSGT00940000155567 #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 ENSGT00940000154668 #36 Hystricomorpha ANCESTRAL SPECIES 31 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000159777 ENSGT00940000155567 #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 ENSGT00940000154668 #36 Hystricomorpha_a ANCESTRAL SPECIES 29 ENSGT00390000007918 #7 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000155567.de #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 ENSGT00940000154668 #36 Guinea pig MODERN SPECIES 29 ENSCPOG00000013303 #7 NADK2 (ENSCPOG00000013309) #8 RANBP3L (ENSCPOG00000014458) #9 SLC1A3 (ENSCPOG00000007462) #10 NIPBL (ENSCPOG00000008170) #11 ENSCPOG00000021336 #12 NUP155 (ENSCPOG00000008800) #13 WDR70 (ENSCPOG00000015400) #14 GDNF (ENSCPOG00000034063) #15 EGFLAM (ENSCPOG00000002020) #16 LIFR (ENSCPOG00000000803) #17 OSMR (ENSCPOG00000015086) #18 RICTOR (ENSCPOG00000039121) #19 FYB1 (ENSCPOG00000003694) #20 ENSCPOG00000008684 #21 PTGER4 (ENSCPOG00000000716) #22 TTC33 (ENSCPOG00000039296) #23 PRKAA1 (ENSCPOG00000005446) #24 RPL37 (ENSCPOG00000040164) #25 C7 (ENSCPOG00000015671) #26 MROH2B (ENSCPOG00000003334) #27 C6 (ENSCPOG00000030163) #28 PLCXD3 (ENSCPOG00000007095) #29 OXCT1 (ENSCPOG00000012966) #30 RIMOC1 (ENSCPOG00000031496) #31 FBXO4 (ENSCPOG00000033716) #32 GHR (ENSCPOG00000035401) #33 CCDC152 (ENSCPOG00000002761) #34 ENSCPOG00000030497 #35 ZNF131 (ENSCPOG00000033475) #36 NIM1K (ENSCPOG00000019426) #37 Hystricomorpha_b ANCESTRAL SPECIES 60 ENSGT00390000007918 #7 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000155567.de #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000161231 #27 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 Long-tailed chinchilla MODERN SPECIES 133 NADK2 (ENSCLAG00000007509) #8 RANBP3L (ENSCLAG00000011000) #9 SLC1A3 (ENSCLAG00000011675) #10 NIPBL (ENSCLAG00000009826) #11 CPLANE1 (ENSCLAG00000010572) #12 NUP155 (ENSCLAG00000010580) #13 WDR70 (ENSCLAG00000012915) #14 GDNF (ENSCLAG00000013976) #15 EGFLAM (ENSCLAG00000011146) #16 LIFR (ENSCLAG00000008192) #17 OSMR (ENSCLAG00000008932) #18 RICTOR (ENSCLAG00000007847) #19 FYB1 (ENSCLAG00000012441) #20 ENSCLAG00000015330 #21 ENSCLAG00000007996 PTGER4 (ENSCLAG00000014156) #22 TTC33 (ENSCLAG00000009002) #23 PRKAA1 (ENSCLAG00000009683) #24 RPL37 (ENSCLAG00000008803) ##25 MROH2B (ENSCLAG00000008282) #27 PLCXD3 (ENSCLAG00000008935) #29 OXCT1 (ENSCLAG00000008732) #30 RIMOC1 (ENSCLAG00000009605) #31 FBXO4 (ENSCLAG00000011352) #32 GHR (ENSCLAG00000014878) #33 CCDC152 (ENSCLAG00000008976) #34 ENSCLAG00000010107 #35 Degu MODERN SPECIES 183 ENSODEG00000003060 ENSODEG00000019081 ENSODEG00000003039 PTGER4 (ENSODEG00000003031) #22 ENSODEG00000018877 TTC33 (ENSODEG00000003010) #23 PRKAA1 (ENSODEG00000002974) #24 ENSODEG00000002946 #25 CARD6 (ENSODEG00000002921) MROH2B (ENSODEG00000002798) #27 PLCXD3 (ENSODEG00000002710) #29 OXCT1 (ENSODEG00000002607) #30 ENSODEG00000002517 #31 FBXO4 (ENSODEG00000001886) #32 ENSODEG00000001859 GHR (ENSODEG00000001839) #33 CCDC152 (ENSODEG00000001811) #34 ENSODEG00000001793 #35 ENSODEG00000018733 Naked mole-rat female MODERN SPECIES 7 ENSHGLG00000007110 NUP155 (ENSHGLG00000011918) #13 ENSHGLG00000042227 WDR70 (ENSHGLG00000007995) #14 ENSHGLG00000045283 #15 EGFLAM (ENSHGLG00000003265) #16 LIFR (ENSHGLG00000002688) #17 OSMR (ENSHGLG00000002225) #18 ENSHGLG00000038546 RICTOR (ENSHGLG00000004986) #19 ENSHGLG00000049355 ENSHGLG00000003910 #20 C9 (ENSHGLG00000003707) DAB2 (ENSHGLG00000003257) #21 ENSHGLG00000019934 PTGER4 (ENSHGLG00000002903) #22 ENSHGLG00000041880 ENSHGLG00000010606 #23 ENSHGLG00000038071 #23 PRKAA1 (ENSHGLG00000010227) #24 ENSHGLG00000009486 ##25 ENSHGLG00000038929 C7 (ENSHGLG00000007774) #26 ENSHGLG00000008189 MROH2B (ENSHGLG00000006059) #27 C6 (ENSHGLG00000005314) #28 PLCXD3 (ENSHGLG00000005203) #29 ENSHGLG00000000417 OXCT1 (ENSHGLG00000005620) #30 ENSHGLG00000049767 ENSHGLG00000044099 Sciuridae ANCESTRAL SPECIES 32 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000159777 ENSGT00940000155567 #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 ENSGT00390000009290 Marmotini ANCESTRAL SPECIES 71 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000159777 ENSGT00940000155567 #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b.g #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 Marmotini_b ANCESTRAL SPECIES 102 ENSGT00390000006320 #8 ENSGT00940000161387 #9 ENSGT00940000155464 #10 ENSGT00390000010427.c #11 ENSGT00800000124150 #12 ENSGT00390000016532 #13 ENSGT00390000015433 #14 ENSGT00950000182993.A.b #15 ENSGT00940000158504 #16 ENSGT00940000155776 #17 ENSGT00940000160851 #18 ENSGT00390000002096 #19 ENSGT00530000063460.A.b #20 ENSGT00940000159777 ENSGT00940000155567 #21 ENSGT01050000244902.a.a.a.a #22 ENSGT00390000017462 #23 ENSGT00940000158865 #24 ENSGT00390000005254.i.a.a.a.a #25 ENSGT00940000162106 ENSGT00940000156804 #26 ENSGT00940000161231 #27 ENSGT00940000156814 #28 ENSGT00940000158747 #29 ENSGT00390000009130.a.a.b.g #30 ENSGT00390000011383 #31 ENSGT00390000014416 #32 ENSGT00940000159987 #33 ENSGT00390000010075 #34 ENSGT00510000049326.b.b #35 Arctic ground squirrel MODERN SPECIES 447 PTGER4 (ENSUPAG00010006503) #22 TTC33 (ENSUPAG00010006499) #23 PRKAA1 (ENSUPAG00010006488) #24 RPL37 (ENSUPAG00010006476) #25 ENSUPAG00010006471 C7 (ENSUPAG00010005393) #26 MROH2B (ENSUPAG00010005355) #27 C6 (ENSUPAG00010005313) #28 PLCXD3 (ENSUPAG00010005309) #29 ENSUPAG00010005278 #30 RIMOC1 (ENSUPAG00010005274) #31 Squirrel MODERN SPECIES 118 SLC1A3 (ENSSTOG00000015072) #10 NIPBL (ENSSTOG00000014981) #11 CPLANE1 (ENSSTOG00000015341) #12 NUP155 (ENSSTOG00000015151) #13 WDR70 (ENSSTOG00000005031) #14 GDNF (ENSSTOG00000028754) #15 ENSSTOG00000032013 EGFLAM (ENSSTOG00000012561) #16 LIFR (ENSSTOG00000012582) #17 OSMR (ENSSTOG00000005685) #18 RICTOR (ENSSTOG00000005716) #19 ENSSTOG00000028890 C9 (ENSSTOG00000002454) DAB2 (ENSSTOG00000002461) #21 ENSSTOG00000028948 PTGER4 (ENSSTOG00000024710) #22 TTC33 (ENSSTOG00000025089) #23 PRKAA1 (ENSSTOG00000008118) #24 ENSSTOG00000033844 ##25 CARD6 (ENSSTOG00000027851) C7 (ENSSTOG00000019606) #26 MROH2B (ENSSTOG00000008175) #27 C6 (ENSSTOG00000008232) #28 PLCXD3 (ENSSTOG00000008266) #29 ENSSTOG00000008271 #30 RIMOC1 (ENSSTOG00000008291) #31 FBXO4 (ENSSTOG00000021819) #32 GHR (ENSSTOG00000007190) #33 CCDC152 (ENSSTOG00000007216) #34 ENSSTOG00000032946 #35 Alpin marmot MODERN SPECIES 27 ENSMMMG00000000236 ENSMMMG00000000219 CTH (ENSMMMG00000000175) ANKRD13C (ENSMMMG00000000111) SRSF11 (ENSMMMG00000018369) LRRC40 (ENSMMMG00000018339) LRRC7 (ENSMMMG00000018169) DEPDC1 (ENSMMMG00000018082) RPE65 (ENSMMMG00000018066) WLS (ENSMMMG00000018053) DIRAS3 (ENSMMMG00000018034) GNG12 (ENSMMMG00000018008) GADD45A (ENSMMMG00000017997) SERBP1 (ENSMMMG00000017849) ENSMMMG00000017835 PTGER4 (ENSMMMG00000017826) #22 TTC33 (ENSMMMG00000017819) #23 PRKAA1 (ENSMMMG00000017787) #24 RPL37 (ENSMMMG00000017779) #25 CARD6 (ENSMMMG00000017776) C7 (ENSMMMG00000017398) #26 ENSMMMG00000017396 MROH2B (ENSMMMG00000017369) #27 C6 (ENSMMMG00000017358) #28 PLCXD3 (ENSMMMG00000017352) #29 ENSMMMG00000017300 #30 RIMOC1 (ENSMMMG00000017296) #31 FBXO4 (ENSMMMG00000017291) #32 GHR (ENSMMMG00000017240) #33 CCDC152 (ENSMMMG00000017224) #34 ENSMMMG00000017221 #35 Eurasian red squirrel MODERN SPECIES 15 NUP155 (ENSSVLG00005006573) #13 ENSSVLG00005006521 WDR70 (ENSSVLG00005006404) #14 GDNF (ENSSVLG00005006351) #15 EGFLAM (ENSSVLG00005006208) #16 LIFR (ENSSVLG00005006057) #17 ENSSVLG00005006034 #18 ENSSVLG00005006015 #18 RICTOR (ENSSVLG00005005561) #19 FYB1 (ENSSVLG00005005277) #20 ENSSVLG00005005217 C9 (ENSSVLG00005005172) DAB2 (ENSSVLG00005005129) #21 ENSSVLG00005005082 ENSSVLG00005005058 PTGER4 (ENSSVLG00005005045) #22 TTC33 (ENSSVLG00005005030) #23 PRKAA1 (ENSSVLG00005004929) #24 RPL37 (ENSSVLG00005004867) #25 CARD6 (ENSSVLG00005004836) C7 (ENSSVLG00005004784) #26 MROH2B (ENSSVLG00005004687) #27 C6 (ENSSVLG00005004631) #28 PLCXD3 (ENSSVLG00005004611) #29 OXCT1 (ENSSVLG00005004564) #30 RIMOC1 (ENSSVLG00005004531) #31 FBXO4 (ENSSVLG00005004500) #32 GHR (ENSSVLG00005004362) #33 CCDC152 (ENSSVLG00005004279) #34 ENSSVLG00005004240 #35 ENSSVLG00005004232