Gnathostomata	ANCESTRAL SPECIES	260														ENSGT00940000154612 #18	ENSGT00390000018351 #20	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.b.b ##33
Euteleostomi	ANCESTRAL SPECIES	93	ENSGT00390000002625	ENSGT00940000159752	ENSGT00940000162258	ENSGT00940000156066	ENSGT00890000139406.a	ENSGT00940000160802	ENSGT00550000074797.b	ENSGT00390000001360	ENSGT00940000155420.b	ENSGT00390000009030	ENSGT00390000006762	ENSGT00940000155932	ENSGT00940000155585	ENSGT00390000000378.d.a ##22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000016675	ENSGT00940000153818.a.b.a.b ##33	ENSGT00550000074863	ENSGT00390000010789	ENSGT00940000164527.b	ENSGT00940000156751
Sarcopterygii	ANCESTRAL SPECIES	132	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839 #13	ENSGT00940000158897 #14	ENSGT00390000001041	ENSGT00940000158891 #15	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.b.b ##33	ENSGT00390000010771 #34
Tetrapoda	ANCESTRAL SPECIES	10	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839 #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00980000203042	ENSGT00940000180342	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.b.b ##33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Amniota	ANCESTRAL SPECIES	16	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000166687	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Mammalia	ANCESTRAL SPECIES	56	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Theria	ANCESTRAL SPECIES	20	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000163530	ENSGT00940000156839 #21	ENSGT00390000018351 #20	ENSGT00940000162087 #19	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
Eutheria	ANCESTRAL SPECIES	18	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
Boreoeutheria	ANCESTRAL SPECIES	20	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Euarchontoglires	ANCESTRAL SPECIES	20	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Primates	ANCESTRAL SPECIES	22	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Haplorrhini	ANCESTRAL SPECIES	38	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.h ##22	ENSGT00390000001618.qb ##23	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37	ENSGT00940000161828
Catarrhini	ANCESTRAL SPECIES	4	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.h.d ##22	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00940000156839.cb ##21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Cercopithecinae_d	ANCESTRAL SPECIES	5	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Sooty mangabey	MODERN SPECIES	165	GTF2A1 (ENSCATG00000044335) #7	STON2 (ENSCATG00000044663) #8	ENSCATG00000030904 #9	BICDL1 (ENSCATG00000032593) #10	RAB35 (ENSCATG00000037465) #11	GCN1 (ENSCATG00000037703) #12	RPLP0 (ENSCATG00000033083) #13	PXN (ENSCATG00000044844) #14	SIRT4 (ENSCATG00000034163) #15	PLA2G1B (ENSCATG00000040470) #16	MSI1 (ENSCATG00000030019) #17	ENSCATG00000031650 #18	TRIAP1 (ENSCATG00000033082) #19	GATC (ENSCATG00000038807) #20	SRSF9 (ENSCATG00000021315) #21	DYNLL1 (ENSCATG00000044829) #22	ENSCATG00000017106 #23	COQ5 (ENSCATG00000031184) #24	RNF10 (ENSCATG00000035849) #25	POP5 (ENSCATG00000036825) #26	CABP1 (ENSCATG00000008340) #27	MLEC (ENSCATG00000034833) #28	UNC119B (ENSCATG00000012538) #29	ACADS (ENSCATG00000037714) #30	SPPL3 (ENSCATG00000039540) #31	ENSCATG00000010514 #32	HNF1A (ENSCATG00000043476) #33	C12orf43 (ENSCATG00000007707) #34	OASL (ENSCATG00000034860) #35	ENSCATG00000041992 #36	P2RX7 (ENSCATG00000010710) #37
Drill	MODERN SPECIES	1430	PRKAB1 (ENSMLEG00000023983)	ENSMLEG00000027428	CIT (ENSMLEG00000029175) #9	BICDL1 (ENSMLEG00000024680) #10	RAB35 (ENSMLEG00000040479) #11	GCN1 (ENSMLEG00000029584) #12	RPLP0 (ENSMLEG00000028407) #13	PXN (ENSMLEG00000006978) #14	SIRT4 (ENSMLEG00000043924) #15	PLA2G1B (ENSMLEG00000018392) #16	MSI1 (ENSMLEG00000003921) #17	ENSMLEG00000017260 #18	TRIAP1 (ENSMLEG00000041641) #19	GATC (ENSMLEG00000039862) #20	SRSF9 (ENSMLEG00000041155) #21	DYNLL1 (ENSMLEG00000040525) #22	ENSMLEG00000030680 #23	COQ5 (ENSMLEG00000021232) #24	RNF10 (ENSMLEG00000032832) #25	POP5 (ENSMLEG00000029377) #26	ENSMLEG00000024224 #27	MLEC (ENSMLEG00000044072) #28	UNC119B (ENSMLEG00000029901) #29	ACADS (ENSMLEG00000037690) #30	SPPL3 (ENSMLEG00000036856) #31	ENSMLEG00000036082 #32	HNF1A (ENSMLEG00000039623) #33	C12orf43 (ENSMLEG00000030232) #34	OASL (ENSMLEG00000037980) #35	ENSMLEG00000032437 #36	P2RX7 (ENSMLEG00000043326) #37
Olive baboon	MODERN SPECIES	19	PRKAB1 (ENSPANG00000008968)	CIT (ENSPANG00000019740) #9	BICDL1 (ENSPANG00000004794) #10	RAB35 (ENSPANG00000008226) #11	GCN1 (ENSPANG00000008132) #12	RPLP0 (ENSPANG00000031704) #13	PXN (ENSPANG00000007047) #14	SIRT4 (ENSPANG00000010985) #15	PLA2G1B (ENSPANG00000016890) #16	MSI1 (ENSPANG00000006335) #17	COX6A1 (ENSPANG00000009882) #18	TRIAP1 (ENSPANG00000026352) #19	GATC (ENSPANG00000033975) #20	SRSF9 (ENSPANG00000016072) #21	ENSPANG00000032856 #23	DYNLL1 (ENSPANG00000051126) #22	COQ5 (ENSPANG00000005880) #24	RNF10 (ENSPANG00000004868) #25	POP5 (ENSPANG00000014166) #26	CABP1 (ENSPANG00000004046) #27	MLEC (ENSPANG00000024285) #28	UNC119B (ENSPANG00000008707) #29	ACADS (ENSPANG00000008967) #30	SPPL3 (ENSPANG00000015785) #31	ENSPANG00000008728 #33	ENSPANG00000040040 #33	C12orf43 (ENSPANG00000026351) #34	OASL (ENSPANG00000002378) #35	ENSPANG00000029865 #36	P2RX7 (ENSPANG00000011007) #37	P2RX4 (ENSPANG00000005121) ##37
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Pig-tailed macaque	MODERN SPECIES	78	PRKAB1 (ENSMNEG00000036323)	CIT (ENSMNEG00000015804) #9	BICDL1 (ENSMNEG00000035439) #10	RAB35 (ENSMNEG00000043655) #11	GCN1 (ENSMNEG00000029336) #12	RPLP0 (ENSMNEG00000030904) #13	PXN (ENSMNEG00000038305) #14	SIRT4 (ENSMNEG00000044429) #15	PLA2G1B (ENSMNEG00000034807) #16	MSI1 (ENSMNEG00000040034) #17	COX6A1 (ENSMNEG00000036895) #18	TRIAP1 (ENSMNEG00000043041) #19	GATC (ENSMNEG00000034653) #20	SRSF9 (ENSMNEG00000044129) #21	ENSMNEG00000038707 #23	DYNLL1 (ENSMNEG00000020935) #22	COQ5 (ENSMNEG00000043101) #24	RNF10 (ENSMNEG00000034195) #25	POP5 (ENSMNEG00000041716) #26	ENSMNEG00000028755 #27	ENSMNEG00000021858	MLEC (ENSMNEG00000022632) #28	UNC119B (ENSMNEG00000043459) #29	ACADS (ENSMNEG00000029994) #30	SPPL3 (ENSMNEG00000030829) #31	ENSMNEG00000029617 #32	HNF1A (ENSMNEG00000037308) #33	C12orf43 (ENSMNEG00000030094) #34	OASL (ENSMNEG00000029657) #35	ENSMNEG00000033274 ##36	P2RX7 (ENSMNEG00000036430) #37
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000157442 #10	ENSGT01030000240309	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT01050000245554.A.b.a	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.fb.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37	ENSGT00940000161828
Rhesus	MODERN SPECIES	2	CIT (ENSMMUG00000019861) #9	ENSMMUG00000057088	BICDL1 (ENSMMUG00000011209) #10	RAB35 (ENSMMUG00000051955) #11	ENSMMUG00000050807	GCN1 (ENSMMUG00000009152) #12	PXN (ENSMMUG00000009159) #14	ENSMMUG00000053308	SIRT4 (ENSMMUG00000046684) #15	PLA2G1B (ENSMMUG00000031528) #16	MSI1 (ENSMMUG00000031527) #17	ENSMMUG00000063609 #18	TRIAP1 (ENSMMUG00000050265) #19	GATC (ENSMMUG00000046665) #20	SRSF9 (ENSMMUG00000016494) #21	DYNLL1 (ENSMMUG00000001194) #22	ENSMMUG00000061718	COQ5 (ENSMMUG00000020601) #24	RNF10 (ENSMMUG00000004223) #25	POP5 (ENSMMUG00000049342) #26	ENSMMUG00000055513	CABP1 (ENSMMUG00000002536) #27	MLEC (ENSMMUG00000000183) #28	UNC119B (ENSMMUG00000065224) #29	ACADS (ENSMMUG00000020648) #30	ENSMMUG00000053578	SPPL3 (ENSMMUG00000020650) #31	HNF1A (ENSMMUG00000006435) #33	C11H12orf43 (ENSMMUG00000039520) #34	OASL (ENSMMUG00000006441) #35	ENSMMUG00000021276 ##36
Crab-eating macaque	MODERN SPECIES	2	BICDL1 (ENSMFAG00000003401) #10	ENSMFAG00000051433	RAB35 (ENSMFAG00000038261) #11	ENSMFAG00000065035	GCN1 (ENSMFAG00000003588) #12	RPLP0 (ENSMFAG00000044128) #13	PXN (ENSMFAG00000031289) #14	ENSMFAG00000055389	SIRT4 (ENSMFAG00000038370) #15	PLA2G1B (ENSMFAG00000052529) #16	MSI1 (ENSMFAG00000001798) #17	ENSMFAG00000064730 ##18	GATC (ENSMFAG00000034197) #20	SRSF9 (ENSMFAG00000039423) #21	ENSMFAG00000036100 #23	DYNLL1 (ENSMFAG00000030961) #22	COQ5 (ENSMFAG00000038162) #24	RNF10 (ENSMFAG00000041159) #25	POP5 (ENSMFAG00000045933) #26	ENSMFAG00000031052 #27	ENSMFAG00000039526 #29	ACADS (ENSMFAG00000001168) #30	SPPL3 (ENSMFAG00000037069) #31	ENSMFAG00000042276 #32	HNF1A (ENSMFAG00000042762) #33	C12orf43 (ENSMFAG00000039888) #34	OASL (ENSMFAG00000043280) #35	ATXN3 (ENSMFAG00000033033) ##36	P2RX7 (ENSMFAG00000032645) #37	ENSMFAG00000061727	P2RX4 (ENSMFAG00000041150) ##37
Vervet Monkey	MODERN SPECIES	2	TMEM233 (ENSCSAG00000002292)	PRKAB1 (ENSCSAG00000002290)	CIT (ENSCSAG00000002284) #9	BICDL1 (ENSCSAG00000002278) #10	RAB35 (ENSCSAG00000002276) #11	GCN1 (ENSCSAG00000002273) #12	RPLP0 (ENSCSAG00000002270) #13	PXN (ENSCSAG00000002269) #14	SIRT4 (ENSCSAG00000002268) #15	PLA2G1B (ENSCSAG00000002266) #16	MSI1 (ENSCSAG00000002265) #17	ENSCSAG00000002263 #18	TRIAP1 (ENSCSAG00000002262) #19	GATC (ENSCSAG00000002259) #20	SRSF9 (ENSCSAG00000002257) #21	DYNLL1 (ENSCSAG00000018946) #22	COQ5 (ENSCSAG00000002254) #24	RNF10 (ENSCSAG00000002250) #25	POP5 (ENSCSAG00000002246) #26	ENSCSAG00000002242 #27	MLEC (ENSCSAG00000002239) #28	UNC119B (ENSCSAG00000002238) #29	ACADS (ENSCSAG00000002235) #30	SPPL3 (ENSCSAG00000002232) #31	HNF1A (ENSCSAG00000002227) #33	C12orf43 (ENSCSAG00000002222) #34	OASL (ENSCSAG00000002221) #35	P2RX7 (ENSCSAG00000002219) #37	P2RX4 (ENSCSAG00000002217) ##37	CAMKK2 (ENSCSAG00000002211)	ANAPC5 (ENSCSAG00000002207)
Rhinopithecus	ANCESTRAL SPECIES	9	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.cb ##21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b ##37
Black snub-nosed monkey	MODERN SPECIES	397									PLA2G1B (ENSRBIG00000027214) #16	MSI1 (ENSRBIG00000036889) #17	COX6A1 (ENSRBIG00000034953) #18	TRIAP1 (ENSRBIG00000035847) #19	GATC (ENSRBIG00000033363) #20	SRSF9 (ENSRBIG00000042683) ##21	ENSRBIG00000037861 #23	DYNLL1 (ENSRBIG00000041398) #22	COQ5 (ENSRBIG00000031157) #24	RNF10 (ENSRBIG00000028311) #25	POP5 (ENSRBIG00000043505) #26	ENSRBIG00000030154 #27	MLEC (ENSRBIG00000026937) #28	UNC119B (ENSRBIG00000035280) #29	ACADS (ENSRBIG00000042555) #30	SPPL3 (ENSRBIG00000035506) #31	ENSRBIG00000039919 #32	HNF1A (ENSRBIG00000031269) #33	C12orf43 (ENSRBIG00000031760) #34	OASL (ENSRBIG00000008349) #35	P2RX7 (ENSRBIG00000029477) #37	P2RX4 (ENSRBIG00000042757) ##37	CAMKK2 (ENSRBIG00000044477)
Golden snub-nosed monkey	MODERN SPECIES	1385	ENSRROG00000044518	PRKAB1 (ENSRROG00000041677)	CIT (ENSRROG00000032144) #9	BICDL1 (ENSRROG00000041540) #10	RAB35 (ENSRROG00000033446) #11	GCN1 (ENSRROG00000039548) #12	RPLP0 (ENSRROG00000042588) #13	PXN (ENSRROG00000010876) #14	SIRT4 (ENSRROG00000029265) #15	PLA2G1B (ENSRROG00000045047) #16	MSI1 (ENSRROG00000041076) #17	COX6A1 (ENSRROG00000029847) #18	TRIAP1 (ENSRROG00000027066) #19	GATC (ENSRROG00000042802) #20	SRSF9 (ENSRROG00000041980) ##21	DYNLL1 (ENSRROG00000003458) #22	ENSRROG00000030723 #23	COQ5 (ENSRROG00000038268) #24	RNF10 (ENSRROG00000035200) #25	POP5 (ENSRROG00000045063) #26	ENSRROG00000043865 #27	MLEC (ENSRROG00000026109) #28	UNC119B (ENSRROG00000032127) #29	ACADS (ENSRROG00000028518) #30	SPPL3 (ENSRROG00000034903) #31	ENSRROG00000039070 #32	HNF1A (ENSRROG00000020954) #33	C12orf43 (ENSRROG00000030517) #34	OASL (ENSRROG00000035890) #35	ENSRROG00000043416 ##36	P2RX7 (ENSRROG00000007262) #37
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.h.d ##22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00910000148626
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00910000148626	ENSGT00510000046406.f.a.b #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.`b.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00910000148626	ENSGT00510000046406.f.a.b #35
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.`b.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37
Pan	ANCESTRAL SPECIES	4	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000161569.o	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n.`b.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37
Bonobo	DUPLICATION
Bonobo	MODERN SPECIES		C1orf174 (ENSPPAG00000031126)	ENSPPAG00000023885	AJAP1 (ENSPPAG00000042959)	ENSPPAG00000009974	NPHP4 (ENSPPAG00000026077)	KCNAB2 (ENSPPAG00000027250)	CHD5 (ENSPPAG00000034048)	RPL22 (ENSPPAG00000001865)	RNF207 (ENSPPAG00000031421)	ENSPPAG00000028335	ICMT (ENSPPAG00000030464)	HES3 (ENSPPAG00000041442)	ENSPPAG00000037924	ENSPPAG00000001362	ENSPPAG00000029251	ENSPPAG00000011848 #22	HES2 (ENSPPAG00000033917)	ENSPPAG00000029183	TNFRSF25 (ENSPPAG00000037123)	PLEKHG5 (ENSPPAG00000036191)	NOL9 (ENSPPAG00000034617)	TAS1R1 (ENSPPAG00000031209)	ZBTB48 (ENSPPAG00000037668)	KLHL21 (ENSPPAG00000029767)	PHF13 (ENSPPAG00000025788)	THAP3 (ENSPPAG00000037871)	DNAJC11 (ENSPPAG00000021225)	CAMTA1 (ENSPPAG00000029693)	ENSPPAG00000017522	PER3 (ENSPPAG00000028242)	ENSPPAG00000028751
Bonobo	MODERN SPECIES	3	PRKAB1 (ENSPPAG00000033669)	CIT (ENSPPAG00000036125) #9	BICDL1 (ENSPPAG00000028291) #10	ENSPPAG00000027445 #11	GCN1 (ENSPPAG00000027301) #12	RPLP0 (ENSPPAG00000029479) #13	PXN (ENSPPAG00000033908) #14	ENSPPAG00000025084	SIRT4 (ENSPPAG00000027391) #15	PLA2G1B (ENSPPAG00000036521) #16	MSI1 (ENSPPAG00000043073) #17	COX6A1 (ENSPPAG00000042873) #18	TRIAP1 (ENSPPAG00000030127) #19	GATC (ENSPPAG00000029164) #20	SRSF9 (ENSPPAG00000034420) #21	ENSPPAG00000035781 #22	ENSPPAG00000029948 #23	COQ5 (ENSPPAG00000029080) #24	RNF10 (ENSPPAG00000039341) #25	POP5 (ENSPPAG00000043719) #26	ENSPPAG00000039806 #27	MLEC (ENSPPAG00000033163) #28	UNC119B (ENSPPAG00000042940) #29	ACADS (ENSPPAG00000019463) #30	SPPL3 (ENSPPAG00000030929) #31	ENSPPAG00000038276	ENSPPAG00000040980 #32	HNF1A (ENSPPAG00000018922) #33	C12orf43 (ENSPPAG00000043405) #34	OASL (ENSPPAG00000036073) #35	ENSPPAG00000018246
Chimpanzee	MODERN SPECIES	3	ENSPTRG00000042986	CIT (ENSPTRG00000005521) #9	BICDL1 (ENSPTRG00000005523) #10	RAB35 (ENSPTRG00000005524) #11	GCN1 (ENSPTRG00000005525) #12	ENSPTRG00000044613 #13	PXN (ENSPTRG00000005527) #14	ENSPTRG00000005528	SIRT4 (ENSPTRG00000005529) #15	PLA2G1B (ENSPTRG00000005530) #16	MSI1 (ENSPTRG00000005531) #17	COX6A1 (ENSPTRG00000005532) #18	TRIAP1 (ENSPTRG00000005533) #19	GATC (ENSPTRG00000049887) #20	SRSF9 (ENSPTRG00000005535) #21	DYNLL1 (ENSPTRG00000005536) #22	ENSPTRG00000048638 #23	COQ5 (ENSPTRG00000005539) #24	RNF10 (ENSPTRG00000005541) #25	POP5 (ENSPTRG00000005543) #26	CABP1 (ENSPTRG00000005544) #27	MLEC (ENSPTRG00000045338) #28	UNC119B (ENSPTRG00000005546) #29	ACADS (ENSPTRG00000005547) #30	SPPL3 (ENSPTRG00000005548) #31	ENSPTRG00000044985	HNF1A (ENSPTRG00000005551) #33	C12H12orf43 (ENSPTRG00000005552) #34	OASL (ENSPTRG00000005553) #35	P2RX7 (ENSPTRG00000005554) #37	P2RX4 (ENSPTRG00000005555) ##37
Human	MODERN SPECIES	3	PRKAB1 (ENSG00000111725)	CIT (ENSG00000122966) #9	BICDL1 (ENSG00000135127) #10	RAB35 (ENSG00000111737) #11	GCN1 (ENSG00000089154) #12	RPLP0 (ENSG00000089157) #13	PXN (ENSG00000089159) #14	SIRT4 (ENSG00000089163) #15	PLA2G1B (ENSG00000170890) #16	MSI1 (ENSG00000135097) #17	COX6A1 (ENSG00000111775) #18	ENSG00000111780	TRIAP1 (ENSG00000170855) #19	GATC (ENSG00000257218) #20	SRSF9 (ENSG00000111786) #21	DYNLL1 (ENSG00000088986) #22	COQ5 (ENSG00000110871) #24	RNF10 (ENSG00000022840) #25	ENSG00000288623	POP5 (ENSG00000167272) #26	CABP1 (ENSG00000157782) #27	MLEC (ENSG00000110917) #28	UNC119B (ENSG00000175970) #29	ACADS (ENSG00000122971) #30	SPPL3 (ENSG00000157837) #31	HNF1A (ENSG00000135100) #33	C12orf43 (ENSG00000157895) #34	OASL (ENSG00000135114) #35	P2RX7 (ENSG00000089041) #37	P2RX4 (ENSG00000135124) ##37	CAMKK2 (ENSG00000110931)
Gorilla	MODERN SPECIES	3	PRKAB1 (ENSGGOG00000013047)	CIT (ENSGGOG00000013056) #9	BICDL1 (ENSGGOG00000016702) #10	ENSGGOG00000040913 #11	GCN1 (ENSGGOG00000004391) #12	RPLP0 (ENSGGOG00000026582) #13	PXN (ENSGGOG00000004408) #14	ENSGGOG00000002330	SIRT4 (ENSGGOG00000024753) #15	PLA2G1B (ENSGGOG00000006680) #16	MSI1 (ENSGGOG00000010328) #17	COX6A1 (ENSGGOG00000014101) #18	TRIAP1 (ENSGGOG00000023657) #19	GATC (ENSGGOG00000026821) #20	ENSGGOG00000027142 ##21	DYNLL1 (ENSGGOG00000022114) #22	ENSGGOG00000008793 #23	COQ5 (ENSGGOG00000008795) #24	RNF10 (ENSGGOG00000013495) #25	POP5 (ENSGGOG00000013505) #26	CABP1 (ENSGGOG00000013164) #27	MLEC (ENSGGOG00000007223) #28	ACADS (ENSGGOG00000002081) #30	SPPL3 (ENSGGOG00000016245) #31	ENSGGOG00000015696	ENSGGOG00000043259 #32	HNF1A (ENSGGOG00000004329) #33	C12orf43 (ENSGGOG00000012113) #34	ENSGGOG00000040230	OASL (ENSGGOG00000012123) #35	P2RX7 (ENSGGOG00000013822) #37
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.h ##22	ENSGT00390000001618.qb ##23	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.h ##22	ENSGT00390000001618.qb ##23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771.i #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b.a ##37	ENSGT00940000161828
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.h.a ##22	ENSGT00390000001618.qb ##23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771.i.a #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b.a ##37	ENSGT00940000161828
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	21	HSPB8 (ENSCJAG00000083788)	CCDC60 (ENSCJAG00000009133)	ENSCJAG00000065656	TMEM233 (ENSCJAG00000081547)	PRKAB1 (ENSCJAG00000009119)	CIT (ENSCJAG00000009005) #9	BICDL1 (ENSCJAG00000008974) #10	ENSCJAG00000008955 #11	GCN1 (ENSCJAG00000008897) #12	RPLP0 (ENSCJAG00000008677) #13	PXN (ENSCJAG00000008639) #14	SIRT4 (ENSCJAG00000039472) #15	PLA2G1B (ENSCJAG00000008624) #16	ENSCJAG00000008578 #17	SRSF9 (ENSCJAG00000001187) #21	ENSCJAG00000070660 ##22	ENSCJAG00000001205 #24	RNF10 (ENSCJAG00000001219) #25	POP5 (ENSCJAG00000001309) #26	CABP1 (ENSCJAG00000044645) #27	UNC119B (ENSCJAG00000047008) #29	ACADS (ENSCJAG00000001332) #30	ENSCJAG00000075902	SPPL3 (ENSCJAG00000001359) #31	HNF1A (ENSCJAG00000013594) #33	ENSCJAG00000038625 #34	OASL (ENSCJAG00000043836) #35	P2RX7 (ENSCJAG00000001404) #37	P2RX4 (ENSCJAG00000001436) ##37	ANAPC5 (ENSCJAG00000001450)	RNF34 (ENSCJAG00000001536)
Marmoset	MODERN SPECIES	10	ESRRG (ENSCJAG00000015141)	USH2A (ENSCJAG00000015184)	ENSCJAG00000071156	ENSCJAG00000074427	KCTD3 (ENSCJAG00000046030)	KCNK2 (ENSCJAG00000015327)	ENSCJAG00000074620	PTPN14 (ENSCJAG00000015389)	SMYD2 (ENSCJAG00000015441)	ENSCJAG00000081067	ENSCJAG00000083995	ENSCJAG00000085826	PROX1 (ENSCJAG00000015514)	ENSCJAG00000075052	RPS6KC1 (ENSCJAG00000015526)	ENSCJAG00000080375 ##22	ANGEL2 (ENSCJAG00000015618)	VASH2 (ENSCJAG00000042796)	FLVCR1 (ENSCJAG00000015690)	SPATA45 (ENSCJAG00000015706)	TATDN3 (ENSCJAG00000015712)	NSL1 (ENSCJAG00000015718)	BATF3 (ENSCJAG00000077626)	ATF3 (ENSCJAG00000047183)	ENSCJAG00000087037	ENSCJAG00000015738	ENSCJAG00000082707	SLC30A1 (ENSCJAG00000015892)	NEK2 (ENSCJAG00000015883)	LPGAT1 (ENSCJAG00000015870)	ENSCJAG00000085462
Cebidae_a	ANCESTRAL SPECIES	8	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.h.a ##22	ENSGT00390000001618.qb ##23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771.i.a #34	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37	ENSGT01020000230351.D.b.a ##37	ENSGT00940000161828
Capuchin	MODERN SPECIES	434	ENSCCAG00000038064	BICDL1 (ENSCCAG00000023092) #10	RAB35 (ENSCCAG00000031720) #11	GCN1 (ENSCCAG00000020592) #12	RPLP0 (ENSCCAG00000020666) #13	PXN (ENSCCAG00000029631) #14	ENSCCAG00000030473	ENSCCAG00000028120	SIRT4 (ENSCCAG00000030374) #15	ENSCCAG00000030105 #16	MSI1 (ENSCCAG00000035567) #17	ENSCCAG00000002632 #18	TRIAP1 (ENSCCAG00000005732) #19	GATC (ENSCCAG00000022235) #20	SRSF9 (ENSCCAG00000036053) #21	ENSCCAG00000036052 ##22	ENSCCAG00000020736 ##23	COQ5 (ENSCCAG00000010621) #24	RNF10 (ENSCCAG00000025089) #25	POP5 (ENSCCAG00000023154) #26	CABP1 (ENSCCAG00000036173) #27	MLEC (ENSCCAG00000024437) #28	UNC119B (ENSCCAG00000027048) #29	ACADS (ENSCCAG00000024502) #30	SPPL3 (ENSCCAG00000023763) #31	ENSCCAG00000037331	HNF1A (ENSCCAG00000034473) #33	ENSCCAG00000038122 #34	OASL (ENSCCAG00000028044) #35	ENSCCAG00000033497	ENSCCAG00000037824
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.b.a ##22
Marmoset	MODERN SPECIES	11	ENSCJAG00000078551	CPLANE1 (ENSCJAG00000018003)	NIPBL (ENSCJAG00000018052)	SLC1A3 (ENSCJAG00000018196)	ENSCJAG00000082486	ENSCJAG00000069947	RANBP3L (ENSCJAG00000018235)	NADK2 (ENSCJAG00000018248)	SKP2 (ENSCJAG00000018275)	LMBRD2 (ENSCJAG00000018328)	UGT3A1 (ENSCJAG00000018354)	ENSCJAG00000065949	CAPSL (ENSCJAG00000018371)	IL7R (ENSCJAG00000018379)	SPEF2 (ENSCJAG00000018398)	ENSCJAG00000075083 ##22	PRLR (ENSCJAG00000018457)	AGXT2 (ENSCJAG00000018485)	DNAJC21 (ENSCJAG00000018495)	RAD1 (ENSCJAG00000062614)	ENSCJAG00000018506	TTC23L (ENSCJAG00000018521)	RAI14 (ENSCJAG00000018539)	ENSCJAG00000082358	C1QTNF3 (ENSCJAG00000048210)	AMACR (ENSCJAG00000043981)	SLC45A2 (ENSCJAG00000018622)	RXFP3 (ENSCJAG00000021867)	ADAMTS12 (ENSCJAG00000018638)	ENSCJAG00000080537	TARS1 (ENSCJAG00000018663)
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.b.a ##22
Capuchin	MODERN SPECIES	287								ENSCCAG00000037319	ENSCCAG00000029502	ENSCCAG00000020304	ENSCCAG00000003005	ENSCCAG00000034537	SLC7A14 (ENSCCAG00000034318)	CLDN11 (ENSCCAG00000030066)	SKIL (ENSCCAG00000030392)	ENSCCAG00000034438 ##22	PRKCI (ENSCCAG00000023151)	ENSCCAG00000030494	PHC3 (ENSCCAG00000026681)	SEC62 (ENSCCAG00000031533)	SAMD7 (ENSCCAG00000029101)	LRRC31 (ENSCCAG00000022156)	LRRIQ4 (ENSCCAG00000028249)	LRRC34 (ENSCCAG00000030982)	ENSCCAG00000029597	ACTRT3 (ENSCCAG00000030087)	ENSCCAG00000027019	MECOM (ENSCCAG00000027164)	GOLIM4 (ENSCCAG00000037090)	ENSCCAG00000021765
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.b.b ##22
Marmoset	MODERN SPECIES	19	ENSCJAG00000071613	NEGR1 (ENSCJAG00000006382)	ZRANB2 (ENSCJAG00000006356)	ENSCJAG00000087297	PTGER3 (ENSCJAG00000022946)	ENSCJAG00000078639	ENSCJAG00000071007	CTH (ENSCJAG00000017808)	ENSCJAG00000045097	ANKRD13C (ENSCJAG00000017783)	SRSF11 (ENSCJAG00000017704)	LRRC40 (ENSCJAG00000017669)	ENSCJAG00000071796	ENSCJAG00000043397	LRRC7 (ENSCJAG00000017648)	ENSCJAG00000083418 ##22	ENSCJAG00000084344	DEPDC1 (ENSCJAG00000017579)	RPE65 (ENSCJAG00000017542)	ENSCJAG00000041466	ENSCJAG00000079987	WLS (ENSCJAG00000017517)	GNG12 (ENSCJAG00000077874)	GADD45A (ENSCJAG00000083486)	IL12RB2 (ENSCJAG00000017427)	ENSCJAG00000017440	IL23R (ENSCJAG00000017407)	ENSCJAG00000031526	C1orf141 (ENSCJAG00000017398)	SLC35D1 (ENSCJAG00000017361)	MIER1 (ENSCJAG00000017276)
Catarrhini	DUPLICATION
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.c.a ##22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.c.a ##22
Hominidae	DUPLICATION
Hominidae	ANCESTRAL SPECIES	11	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b.p	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a.a ##22	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00910000147808	ENSGT00940000155057	ENSGT00390000011648.a	ENSGT00390000007283
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b.p	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a.a ##22	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00910000147808	ENSGT00940000155057	ENSGT00390000011648.a	ENSGT00390000007283
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b.p	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a.a ##22	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00910000147808	ENSGT00940000155057	ENSGT00390000011648.a	ENSGT00390000007283
Pan	ANCESTRAL SPECIES	13	ENSGT00940000160479	ENSGT01050000244891.A.j.a.b	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b.p.a	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a.a ##22	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00620000087961.b	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00910000147808	ENSGT00940000155057	ENSGT00390000011648.a	ENSGT00390000007283
Chimpanzee	MODERN SPECIES	20	ZNF804B (ENSPTRG00000019378)	ENSPTRG00000044971	STEAP4 (ENSPTRG00000019377)	SRI (ENSPTRG00000019376)	ADAM22 (ENSPTRG00000019374)	DBF4 (ENSPTRG00000019372)	SLC25A40 (ENSPTRG00000019371)	RUNDC3B (ENSPTRG00000019370)	ABCB1 (ENSPTRG00000019369)	ABCB4 (ENSPTRG00000024082)	CROT (ENSPTRG00000019367)	TMEM243 (ENSPTRG00000019365)	DMTF1 (ENSPTRG00000019364)	ELAPOR2 (ENSPTRG00000022827)	GRM3 (ENSPTRG00000019361)	ENSPTRG00000047654 ##22	SEMA3D (ENSPTRG00000019357)	SEMA3A (ENSPTRG00000019354)	SEMA3E (ENSPTRG00000019353)	PCLO (ENSPTRG00000019351)	CACNA2D1 (ENSPTRG00000019350)	HGF (ENSPTRG00000019349)	SEMA3C (ENSPTRG00000019348)	CD36 (ENSPTRG00000019346)	GNAT3 (ENSPTRG00000034563)	GNAI1 (ENSPTRG00000019343)	ENSPTRG00000046449	MAGI2 (ENSPTRG00000019341)	PHTF2 (ENSPTRG00000019340)	TMEM60 (ENSPTRG00000019339)	RSBN1L (ENSPTRG00000019338)
Gorilla	MODERN SPECIES	20	TEX47 (ENSGGOG00000027057)	ENSGGOG00000036974	STEAP4 (ENSGGOG00000013341)	SRI (ENSGGOG00000000796)	ADAM22 (ENSGGOG00000002042)	DBF4 (ENSGGOG00000015538)	SLC25A40 (ENSGGOG00000004674)	RUNDC3B (ENSGGOG00000034852)	ABCB1 (ENSGGOG00000001146)	ABCB4 (ENSGGOG00000039612)	CROT (ENSGGOG00000015962)	TMEM243 (ENSGGOG00000007610)	DMTF1 (ENSGGOG00000002781)	ELAPOR2 (ENSGGOG00000014770)	GRM3 (ENSGGOG00000015336)	ENSGGOG00000026806 ##22	SEMA3D (ENSGGOG00000012626)	SEMA3A (ENSGGOG00000015085)	SEMA3E (ENSGGOG00000025533)	PCLO (ENSGGOG00000004197)	ENSGGOG00000027450	ENSGGOG00000041538	CACNA2D1 (ENSGGOG00000027366)	HGF (ENSGGOG00000003432)	SEMA3C (ENSGGOG00000016324)	CD36 (ENSGGOG00000006115)	GNAT3 (ENSGGOG00000010095)	GNAI1 (ENSGGOG00000008064)	MAGI2 (ENSGGOG00000001298)	ENSGGOG00000040586	ENSGGOG00000025015
Orangutan	MODERN SPECIES	20	ZNF804B (ENSPPYG00000017835)	TEX47 (ENSPPYG00000017836)	STEAP4 (ENSPPYG00000017837)	SRI (ENSPPYG00000017838)	ADAM22 (ENSPPYG00000017839)	DBF4 (ENSPPYG00000017840)	SLC25A40 (ENSPPYG00000017841)	RUNDC3B (ENSPPYG00000017842)	ABCB1 (ENSPPYG00000017843)	ABCB4 (ENSPPYG00000017845)	CROT (ENSPPYG00000017846)	TMEM243 (ENSPPYG00000017848)	DMTF1 (ENSPPYG00000017849)	ELAPOR2 (ENSPPYG00000017850)	GRM3 (ENSPPYG00000017851)	ENSPPYG00000039702 ##22	SEMA3D (ENSPPYG00000017852)	SEMA3A (ENSPPYG00000017855)	SEMA3E (ENSPPYG00000017856)	PCLO (ENSPPYG00000032039)	CACNA2D1 (ENSPPYG00000017859)	HGF (ENSPPYG00000017860)	SEMA3C (ENSPPYG00000017861)	CD36 (ENSPPYG00000017862)	GNAT3 (ENSPPYG00000017863)	GNAI1 (ENSPPYG00000017864)	MAGI2 (ENSPPYG00000017865)	PHTF2 (ENSPPYG00000017867)	ENSPPYG00000017868	TMEM60 (ENSPPYG00000017869)	RSBN1L (ENSPPYG00000017870)
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.c.a.b ##22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT00940000155937.i	ENSGT00910000146847.a	ENSGT00390000013236.d	ENSGT00940000156816	ENSGT00940000156613	ENSGT00440000038430	ENSGT00940000155613	ENSGT00390000014113	ENSGT00940000156147	ENSGT01100000263537.b.b.c.a.b	ENSGT00390000003303	ENSGT00390000003133.i	ENSGT00940000158937	ENSGT00940000156671	ENSGT00940000159392 #8	ENSGT00390000000378.d.b.h.c.a.b ##22	ENSGT00940000156726 #7	ENSGT00940000156510	ENSGT00950000183179.b.a.f.b	ENSGT00390000007020	ENSGT00940000154482.b.b.b	ENSGT00910000147037	ENSGT00940000154618	ENSGT00940000158221	ENSGT00950000183140.a.a.m.a.a.a	ENSGT00390000010423	ENSGT00390000008624	ENSGT00390000004599	ENSGT00940000155786	ENSGT00940000162809	ENSGT00940000155144
Gorilla	MODERN SPECIES	5	TTC8 (ENSGGOG00000034849)	EML5 (ENSGGOG00000042260)	ZC3H14 (ENSGGOG00000010278)	ENSGGOG00000006477	ENSGGOG00000039672	SPATA7 (ENSGGOG00000001514)	KCNK10 (ENSGGOG00000040990)	GPR65 (ENSGGOG00000024995)	ENSGGOG00000039778	GALC (ENSGGOG00000016552)	FLRT2 (ENSGGOG00000037480)	SEL1L (ENSGGOG00000012102)	ENSGGOG00000036390	ENSGGOG00000041524	STON2 (ENSGGOG00000003768) #8	ENSGGOG00000005359 ##22	GTF2A1 (ENSGGOG00000003265) #7	ENSGGOG00000025974	TSHR (ENSGGOG00000008447)	CEP128 (ENSGGOG00000013293)	ENSGGOG00000036856	NRXN3 (ENSGGOG00000042275)	ADCK1 (ENSGGOG00000009934)	ENSGGOG00000028063	SNW1 (ENSGGOG00000026016)	ENSGGOG00000011059	ALKBH1 (ENSGGOG00000011055)	SPTLC2 (ENSGGOG00000011886)	ENSGGOG00000025400	AHSA1 (ENSGGOG00000007832)	VIPAS39 (ENSGGOG00000016527)
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT00940000155937.i	ENSGT00910000146847.a	ENSGT00390000013236.d	ENSGT00940000156816	ENSGT00940000156613	ENSGT00440000038430	ENSGT00940000155613	ENSGT00390000014113	ENSGT00940000156147	ENSGT01100000263537.b.b.c.a.b	ENSGT00390000003303	ENSGT00390000003133.i	ENSGT00940000158937	ENSGT00940000156671	ENSGT00940000159392 #8	ENSGT00390000000378.d.b.h.c.a.b ##22	ENSGT00940000156726 #7	ENSGT00940000156510	ENSGT00950000183179.b.a.f.b	ENSGT00390000007020	ENSGT00940000154482.b.b.b	ENSGT00910000147037	ENSGT00940000154618	ENSGT00940000158221	ENSGT00950000183140.a.a.m.a.a.a	ENSGT00390000010423	ENSGT00390000008624	ENSGT00390000004599	ENSGT00940000155786	ENSGT00940000162809	ENSGT00940000155144
Pan	ANCESTRAL SPECIES	8	ENSGT00910000146847.a	ENSGT00390000013236.d	ENSGT00940000156816	ENSGT00940000156613	ENSGT00440000038430	ENSGT00940000155613	ENSGT00390000014113	ENSGT00940000156147	ENSGT01100000263537.b.b.c.a.b	ENSGT00390000003303	ENSGT00390000003133.i	ENSGT00940000158937	ENSGT00940000155413.k.b	ENSGT00940000156671	ENSGT00940000159392 #8	ENSGT00390000000378.d.b.h.c.a.b ##22	ENSGT00940000156726 #7	ENSGT00940000156510	ENSGT00950000183179.b.a.f.b	ENSGT00390000007020	ENSGT00940000154482.b.b.b	ENSGT00910000147037	ENSGT00940000154618	ENSGT01050000246916	ENSGT00390000010800	ENSGT00940000158221	ENSGT00950000183140.a.a.m.a.a.a	ENSGT00390000010423	ENSGT00390000008624	ENSGT00390000004599	ENSGT00940000155786
Chimpanzee	MODERN SPECIES	5	ENSPTRG00000051196	ENSPTRG00000052735	TTC8 (ENSPTRG00000006610)	EML5 (ENSPTRG00000006609)	ZC3H14 (ENSPTRG00000006608)	PTPN21 (ENSPTRG00000006607)	SPATA7 (ENSPTRG00000006606)	KCNK10 (ENSPTRG00000006604)	GPR65 (ENSPTRG00000047008)	ENSPTRG00000044490	GALC (ENSPTRG00000006602)	FLRT2 (ENSPTRG00000045540)	ENSPTRG00000052802	SEL1L (ENSPTRG00000006599)	STON2 (ENSPTRG00000006598) #8	ENSPTRG00000030689 ##22	GTF2A1 (ENSPTRG00000006596) #7	ENSPTRG00000041202	TSHR (ENSPTRG00000006595)	CEP128 (ENSPTRG00000006594)	ENSPTRG00000049712	DIO2 (ENSPTRG00000050323)	ENSPTRG00000049541	ENSPTRG00000052206	NRXN3 (ENSPTRG00000006589)	ADCK1 (ENSPTRG00000006588)	C14H14orf178 (ENSPTRG00000024275)	SNW1 (ENSPTRG00000006587)	SLIRP (ENSPTRG00000030691)	ALKBH1 (ENSPTRG00000006586)	SPTLC2 (ENSPTRG00000006584)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.c.a ##22
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000000378.d.b.h.c.a ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.l	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00940000160479	ENSGT00390000005565	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000154863.eb	ENSGT00940000154908.h	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00390000008196.g.a	ENSGT00940000155057
Cercopithecinae_b	ANCESTRAL SPECIES	11	ENSGT00390000008042.A.a.b	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156681	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000154863.eb	ENSGT00940000154908.h	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00390000008196.g.a	ENSGT00940000155057
Cercopithecinae_d	ANCESTRAL SPECIES	24	ENSGT00390000008042.A.a.b	ENSGT00940000160479	ENSGT00390000008042.B	ENSGT00940000153979.B	ENSGT00940000156889	ENSGT00530000063909.b	ENSGT00940000160249	ENSGT00940000159175	ENSGT00940000155287	ENSGT00940000159418	ENSGT01060000248556.C	ENSGT00390000010221	ENSGT00940000156016	ENSGT00940000154983.c.b	ENSGT01030000234595.B.c.b	ENSGT00390000000378.d.b.h.c.a ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156681	ENSGT00390000014814.b.gb	ENSGT00940000158203	ENSGT00940000158437	ENSGT00620000087961.a.b.a.a.a.a	ENSGT00940000154863.eb	ENSGT00940000154908.h	ENSGT00940000155209	ENSGT00940000156019	ENSGT00940000159379	ENSGT00940000153372.A.f	ENSGT00940000161422	ENSGT00940000153567.b.a.b	ENSGT00390000008196.g.a
Sooty mangabey	MODERN SPECIES	230			ZNF804B (ENSCATG00000021949)	STEAP4 (ENSCATG00000040292)	SRI (ENSCATG00000032580)	ADAM22 (ENSCATG00000042978)	DBF4 (ENSCATG00000028286)	SLC25A40 (ENSCATG00000030682)	RUNDC3B (ENSCATG00000032221)	ABCB4 (ENSCATG00000041292)	CROT (ENSCATG00000031503)	TMEM243 (ENSCATG00000041863)	DMTF1 (ENSCATG00000006528)	ELAPOR2 (ENSCATG00000030407)	GRM3 (ENSCATG00000035549)	ENSCATG00000043645 ##22	ENSCATG00000043345 ##23	SEMA3D (ENSCATG00000000036)	ENSCATG00000017512
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000000378.d.b.h.c.a ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.l	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00910000147784	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.l	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d	ENSGT00390000005732.v.a.a
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00910000147784	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.l	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d	ENSGT00390000005732.v.b
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00910000147784	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.l	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d	ENSGT00390000005732.v.b
Sooty mangabey	MODERN SPECIES	268	CROCC (ENSCATG00000040199)	MFAP2 (ENSCATG00000036608)	ATP13A2 (ENSCATG00000037300)	ENSCATG00000021540	PADI2 (ENSCATG00000013837)	PADI1 (ENSCATG00000041533)	PADI3 (ENSCATG00000035685)	PADI4 (ENSCATG00000026069)	PADI6 (ENSCATG00000040335)	RCC2 (ENSCATG00000034005)	ARHGEF10L (ENSCATG00000037671)	ACTL8 (ENSCATG00000035731)	ENSCATG00000014447	IGSF21 (ENSCATG00000031219)	KLHDC7A (ENSCATG00000011945)	ENSCATG00000033896 ##22	PAX7 (ENSCATG00000029569)	TAS1R2 (ENSCATG00000037987)	ALDH4A1 (ENSCATG00000039174)	IFFO2 (ENSCATG00000032689)	UBR4 (ENSCATG00000032066)	EMC1 (ENSCATG00000038016)	MRTO4 (ENSCATG00000030492)
Macaca	ANCESTRAL SPECIES		ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00910000147784	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00940000158496.x.a	ENSGT00390000006238.l	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00940000158496.w	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000000703.g.a.d	ENSGT00390000005732.v.a.a
Pig-tailed macaque	MODERN SPECIES	584	CROCC (ENSMNEG00000012132)	MFAP2 (ENSMNEG00000040566)	ATP13A2 (ENSMNEG00000028973)	ENSMNEG00000015134	SDHB (ENSMNEG00000035421)	PADI2 (ENSMNEG00000034472)	PADI1 (ENSMNEG00000042585)	PADI3 (ENSMNEG00000042577)	PADI4 (ENSMNEG00000030014)	PADI6 (ENSMNEG00000039952)	RCC2 (ENSMNEG00000040293)	ARHGEF10L (ENSMNEG00000043188)	ACTL8 (ENSMNEG00000045072)	ENSMNEG00000040160	IGSF21 (ENSMNEG00000035891)	ENSMNEG00000038185 ##22	KLHDC7A (ENSMNEG00000042552)	PAX7 (ENSMNEG00000035168)	TAS1R2 (ENSMNEG00000037099)	ALDH4A1 (ENSMNEG00000039474)	IFFO2 (ENSMNEG00000037052)	UBR4 (ENSMNEG00000028487)	EMC1 (ENSMNEG00000038523)	MRTO4 (ENSMNEG00000032783)	AKR7L (ENSMNEG00000033892)	AKR7A3 (ENSMNEG00000036420)	ENSMNEG00000045253	SLC66A1 (ENSMNEG00000031897)	ENSMNEG00000017360	CAPZB (ENSMNEG00000040419)	ENSMNEG00000021168
Rhinopithecus	ANCESTRAL SPECIES	48		ENSGT00940000155758.e.b.a	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558.m	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151.m	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.m.a	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d
Golden snub-nosed monkey	MODERN SPECIES	2526														ENSRROG00000038024	IGSF21 (ENSRROG00000031548)	ENSRROG00000038504 ##22	ENSRROG00000034470 ##23	PAX7 (ENSRROG00000028424)	TAS1R2 (ENSRROG00000013289)	ALDH4A1 (ENSRROG00000042279)	IFFO2 (ENSRROG00000035876)	UBR4 (ENSRROG00000031819)	EMC1 (ENSRROG00000035965)	ENSRROG00000042838	AKR7A2 (ENSRROG00000037777)	SLC66A1 (ENSRROG00000042186)	CAPZB (ENSRROG00000035187)	ENSRROG00000036878	MICOS10 (ENSRROG00000025733)	NBL1 (ENSRROG00000045168)	HTR6 (ENSRROG00000031118)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.j.b	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d
Hominidae	ANCESTRAL SPECIES	3	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.j.b	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00390000001618.qb ##23	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.j.b	ENSGT00940000158496.x	ENSGT00940000163704	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.j.b	ENSGT00940000158496.x	ENSGT00940000163704.g	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d	ENSGT00940000154209.b
Pan	ANCESTRAL SPECIES		ENSGT00390000009359.b	ENSGT00940000155758	ENSGT00390000017736.b	ENSGT00940000159714	ENSGT00390000013558	ENSGT00940000153217.d	ENSGT00940000153217.c.b	ENSGT00940000153217.c.a.b	ENSGT00940000153217.c.a.a.a	ENSGT00940000153217.c.a.a.b	ENSGT00940000156151	ENSGT00940000153798.A.b	ENSGT00940000162905	ENSGT00390000002421	ENSGT00940000162724	ENSGT00390000000378.d.b.h.c.b ##22	ENSGT00940000156759	ENSGT00940000156136	ENSGT00560000077335	ENSGT00510000046803.a	ENSGT00600000084471	ENSGT00390000002461	ENSGT00390000006238.j.b	ENSGT00940000158496.x	ENSGT00940000163704.g	ENSGT00940000164191.a	ENSGT00390000003344	ENSGT00390000017957	ENSGT00390000005732.v	ENSGT00390000000703.g.a.d	ENSGT00940000154209.b
Chimpanzee	MODERN SPECIES		NECAP2 (ENSPTRG00000000228)	CROCC (ENSPTRG00000000238)	MFAP2 (ENSPTRG00000000239)	ATP13A2 (ENSPTRG00000000241)	SDHB (ENSPTRG00000000242)	PADI2 (ENSPTRG00000000243)	PADI1 (ENSPTRG00000000244)	PADI3 (ENSPTRG00000000245)	PADI4 (ENSPTRG00000000246)	PADI6 (ENSPTRG00000052623)	RCC2 (ENSPTRG00000000247)	ARHGEF10L (ENSPTRG00000000248)	ACTL8 (ENSPTRG00000000249)	IGSF21 (ENSPTRG00000000250)	KLHDC7A (ENSPTRG00000048769)	ENSPTRG00000042982 ##22	PAX7 (ENSPTRG00000000253)	TAS1R2 (ENSPTRG00000000254)	ALDH4A1 (ENSPTRG00000000255)	IFFO2 (ENSPTRG00000000256)	UBR4 (ENSPTRG00000000257)	EMC1 (ENSPTRG00000000261)	MRTO4 (ENSPTRG00000000262)	AKR7A3 (ENSPTRG00000000264)	AKR7A2 (ENSPTRG00000000265)	SLC66A1 (ENSPTRG00000000266)	CAPZB (ENSPTRG00000000268)	MICOS10 (ENSPTRG00000000269)	ENSPTRG00000051668	NBL1 (ENSPTRG00000043114)	HTR6 (ENSPTRG00000000271)
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000155307.b	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.h.d ##22	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Hominoidea	ANCESTRAL SPECIES	5	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839.bb.a #21	ENSGT00390000000378.d.b.g #22	ENSGT00390000001618.rb #23	ENSGT00390000000378.d.b.h.d ##22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000163657	ENSGT00940000154708.eb.a.b #32	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00910000148626	ENSGT00510000046406.f.a.b #35	ENSGT01020000230351.D.a.a.b.l #37
Hominidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.h.d ##22
Orangutan	MODERN SPECIES	3	PRKAB1 (ENSPPYG00000005018)	CIT (ENSPPYG00000005019) #9	BICDL1 (ENSPPYG00000005020) #10	RAB35 (ENSPPYG00000005021) #11	GCN1 (ENSPPYG00000030883) #12	RPLP0 (ENSPPYG00000005022) #13	PXN (ENSPPYG00000005023) #14	ENSPPYG00000005024	SIRT4 (ENSPPYG00000005025) #15	PLA2G1B (ENSPPYG00000005026) #16	MSI1 (ENSPPYG00000005027) #17	COX6A1 (ENSPPYG00000005028) #18	TRIAP1 (ENSPPYG00000005029) #19	GATC (ENSPPYG00000005030) #20	ENSPPYG00000005031 #21	ENSPPYG00000005033 ##22	ENSPPYG00000005032 #23	COQ5 (ENSPPYG00000005034) #24	RNF10 (ENSPPYG00000005035) #25	POP5 (ENSPPYG00000005036) #26	CABP1 (ENSPPYG00000005037) #27	ENSPPYG00000005038 #28	UNC119B (ENSPPYG00000039327) #29	ACADS (ENSPPYG00000005040) #30	SPPL3 (ENSPPYG00000005041) #31	ENSPPYG00000033397 #32	HNF1A (ENSPPYG00000005042) #33	C12orf43 (ENSPPYG00000040549) #34	OASL (ENSPPYG00000005044) #35	P2RX7 (ENSPPYG00000005045) #37	P2RX4 (ENSPPYG00000005046) ##37
Gibbon	MODERN SPECIES		PRKAB1 (ENSNLEG00000000231)	ENSNLEG00000034278	CIT (ENSNLEG00000000249) #9	BICDL1 (ENSNLEG00000029257) #10	ENSNLEG00000000263 #11	GCN1 (ENSNLEG00000000276) #12	RPLP0 (ENSNLEG00000000292) #13	SIRT4 (ENSNLEG00000015616) #15	PLA2G1B (ENSNLEG00000015628) #16	MSI1 (ENSNLEG00000015636) #17	ENSNLEG00000033213	COX6A1 (ENSNLEG00000028439) #18	TRIAP1 (ENSNLEG00000015649) #19	GATC (ENSNLEG00000015651) #20	SRSF9 (ENSNLEG00000015661) #21	ENSNLEG00000016859 ##22	COQ5 (ENSNLEG00000015685) #24	RNF10 (ENSNLEG00000015728) #25	POP5 (ENSNLEG00000015839) #26	ENSNLEG00000036198 #27	MLEC (ENSNLEG00000034759) #28	UNC119B (ENSNLEG00000015861) #29	ACADS (ENSNLEG00000015881) #30	SPPL3 (ENSNLEG00000015922) #31	ENSNLEG00000027895	ENSNLEG00000019083 #32	ENSNLEG00000015946 #33	ENSNLEG00000032853 #34	ENSNLEG00000027166	OASL (ENSNLEG00000027642) #35	P2RX7 (ENSNLEG00000015976) #37
Tarsier	MODERN SPECIES	7153																DYNLL1 (ENSTSYG00000035598) #22	COQ5 (ENSTSYG00000007068) #24	RNF10 (ENSTSYG00000006137) #25	POP5 (ENSTSYG00000027616) #26	ENSTSYG00000034070 #27	MLEC (ENSTSYG00000000289) #28	UNC119B (ENSTSYG00000000290) #29	ACADS (ENSTSYG00000031704) #30	SPPL3 (ENSTSYG00000004715) #31
Strepsirrhini	ANCESTRAL SPECIES	19	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Bushbaby	MODERN SPECIES	153	CCDC60 (ENSOGAG00000010820)	TMEM233 (ENSOGAG00000032408)	PRKAB1 (ENSOGAG00000005586)	ENSOGAG00000026800	CIT (ENSOGAG00000005590) #9	BICDL1 (ENSOGAG00000010782) #10	GCN1 (ENSOGAG00000001952) #12	RPLP0 (ENSOGAG00000003843) #13	PXN (ENSOGAG00000030557) #14	SIRT4 (ENSOGAG00000009492) #15	MSI1 (ENSOGAG00000003847) #17	ENSOGAG00000003561 #18	TRIAP1 (ENSOGAG00000003849) #19	GATC (ENSOGAG00000003850) #20	SRSF9 (ENSOGAG00000003852) #21	DYNLL1 (ENSOGAG00000030934) #22	COQ5 (ENSOGAG00000008517) #24	RNF10 (ENSOGAG00000008521) #25	POP5 (ENSOGAG00000008528) #26	ENSOGAG00000008530 #27	MLEC (ENSOGAG00000008533) #28	UNC119B (ENSOGAG00000008534) #29	ACADS (ENSOGAG00000008536) #30	SPPL3 (ENSOGAG00000008538) #31	HNF1A (ENSOGAG00000009071) #33	C12orf43 (ENSOGAG00000009074) #34	OASL (ENSOGAG00000009076) #35	ENSOGAG00000030882 ##35	C12orf76 (ENSOGAG00000008048)	ANKRD13A (ENSOGAG00000012287)	GIT2 (ENSOGAG00000012279)
Lemuriformes	ANCESTRAL SPECIES	20	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771.g #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	29	TXNRD1 (ENSMICG00000011679)	CHST11 (ENSMICG00000046027)	SLC41A2 (ENSMICG00000011700)	NOPCHAP1 (ENSMICG00000011708)	ALDH1L2 (ENSMICG00000011711)	WASHC4 (ENSMICG00000014415)	APPL2 (ENSMICG00000014454)	C12orf75 (ENSMICG00000026810)	NUAK1 (ENSMICG00000043070)	CKAP4 (ENSMICG00000038763)	TCP11L2 (ENSMICG00000008898)	POLR3B (ENSMICG00000008910)	RFX4 (ENSMICG00000008937)	RIC8B (ENSMICG00000008959)	ENSMICG00000046670	ENSMICG00000030688 #22	ENSMICG00000046286 #23	CRY1 (ENSMICG00000006849)	ENSMICG00000015692	ABTB3 (ENSMICG00000007791)	PWP1 (ENSMICG00000007800)	PRDM4 (ENSMICG00000007807)	ENSMICG00000013303	BPIFC (ENSMICG00000013327)	FBXO7 (ENSMICG00000013344)	TIMP3 (ENSMICG00000045156)	SYN3 (ENSMICG00000013351)	ENSMICG00000031007	ENSMICG00000045713	ENSMICG00000031013	LARGE1 (ENSMICG00000011834)
Mouse lemur	MODERN SPECIES	13	TMEM233 (ENSMICG00000037512)	PRKAB1 (ENSMICG00000012419)	CIT (ENSMICG00000012425) #9	BICDL1 (ENSMICG00000012455) #10	ENSMICG00000047356 #11	GCN1 (ENSMICG00000012479) #12	RPLP0 (ENSMICG00000012551) #13	PXN (ENSMICG00000033215) #14	SIRT4 (ENSMICG00000012576) #15	PLA2G1B (ENSMICG00000001390) #16	MSI1 (ENSMICG00000033181) #17	COX6A1 (ENSMICG00000046311) #18	TRIAP1 (ENSMICG00000038646) #19	GATC (ENSMICG00000008669) #20	SRSF9 (ENSMICG00000008674) #21	ENSMICG00000044748 #22	ENSMICG00000006371 #24	RNF10 (ENSMICG00000008682) #25	POP5 (ENSMICG00000008692) #26	CABP1 (ENSMICG00000029555) #27	MLEC (ENSMICG00000008695) #28	UNC119B (ENSMICG00000030815) #29	ACADS (ENSMICG00000008702) #30	ENSMICG00000047790	SPPL3 (ENSMICG00000008710) #31	ENSMICG00000031099 #33	C12orf43 (ENSMICG00000008728) #34	OASL (ENSMICG00000046728) #35	C12orf76 (ENSMICG00000047429)	ANKRD13A (ENSMICG00000017203)	GIT2 (ENSMICG00000017192)
Lemuriformes_a	ANCESTRAL SPECIES	87	ENSGT00910000146992	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771.g #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
Greater bamboo lemur	MODERN SPECIES	53	ENSPSMG00000000191	CIT (ENSPSMG00000000438) #9	BICDL1 (ENSPSMG00000000515) #10	RAB35 (ENSPSMG00000000521) #11	GCN1 (ENSPSMG00000000901) #12	RPLP0 (ENSPSMG00000001368) #13	PXN (ENSPSMG00000001512) #14	SIRT4 (ENSPSMG00000001536) #15	PLA2G1B (ENSPSMG00000001542) #16	MSI1 (ENSPSMG00000001588) #17	COX6A1 (ENSPSMG00000001595) #18	TRIAP1 (ENSPSMG00000001605) #19	GATC (ENSPSMG00000001625) #20	SRSF9 (ENSPSMG00000001652) #21	ENSPSMG00000001657 #23	DYNLL1 (ENSPSMG00000001667) #22	COQ5 (ENSPSMG00000001704) #24	RNF10 (ENSPSMG00000001769) #25	POP5 (ENSPSMG00000001929) #26	CABP1 (ENSPSMG00000001977) #27	MLEC (ENSPSMG00000002027) #28	UNC119B (ENSPSMG00000002037) #29	ACADS (ENSPSMG00000002089) #30	SPPL3 (ENSPSMG00000002190) #31	HNF1A (ENSPSMG00000002283) #33	ENSPSMG00000002430 #34	OASL (ENSPSMG00000002452) #35	ENSPSMG00000002493 ##35	WSCD2 (ENSPSMG00000002551)	CMKLR1 (ENSPSMG00000002558)	FICD (ENSPSMG00000002565)
Coquerels sifaka	MODERN SPECIES	446	TMEM233 (ENSPCOG00000015836)	PRKAB1 (ENSPCOG00000009346)	CIT (ENSPCOG00000018760) #9	BICDL1 (ENSPCOG00000015300) #10	RAB35 (ENSPCOG00000026153) #11	GCN1 (ENSPCOG00000025901) #12	RPLP0 (ENSPCOG00000015492) #13	PXN (ENSPCOG00000017926) #14	SIRT4 (ENSPCOG00000006207) #15	ENSPCOG00000014095 #16	MSI1 (ENSPCOG00000017341) #17	COX6A1 (ENSPCOG00000023708) #18	ENSPCOG00000018332	ENSPCOG00000009493 #20	SRSF9 (ENSPCOG00000015115) #21	DYNLL1 (ENSPCOG00000015031) #22	COQ5 (ENSPCOG00000023183) #24	RNF10 (ENSPCOG00000023255) #25	POP5 (ENSPCOG00000017618) #26	ENSPCOG00000004597	ENSPCOG00000013403 #27	MLEC (ENSPCOG00000024508) #28	UNC119B (ENSPCOG00000001641) #29	ACADS (ENSPCOG00000005381) #30	SPPL3 (ENSPCOG00000018081) #31	HNF1A (ENSPCOG00000023769) #33	C12orf43 (ENSPCOG00000025153) #34	OASL (ENSPCOG00000026188) #35	C12orf76 (ENSPCOG00000027357)	ANKRD13A (ENSPCOG00000010599)	GIT2 (ENSPCOG00000016849)
Euarchontoglires_A	ANCESTRAL SPECIES	18	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000166687	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Glires	ANCESTRAL SPECIES	19	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000166687	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Rodentia	ANCESTRAL SPECIES	20	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.c.a ##13	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Rodentia_A	DUPLICATION
Rodentia_A	DUPLICATION
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.a #22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.a #22
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.a #22
Alpin marmot	MODERN SPECIES	63												ENSMMMG00000019200	SEPTIN10 (ENSMMMG00000019209)	EDAR (ENSMMMG00000019221)	CCDC138 (ENSMMMG00000019222)	ENSMMMG00000019239 #22	RANBP2 (ENSMMMG00000019266)	ENSMMMG00000019295	ENSMMMG00000019300	GCC2 (ENSMMMG00000019357)	UXS1 (ENSMMMG00000019393)	ST6GAL2 (ENSMMMG00000019407)	ENSMMMG00000019419	SLC5A7 (ENSMMMG00000019424)	SULT1C3 (ENSMMMG00000019435)	SULT1C2 (ENSMMMG00000019442)	TBC1D8 (ENSMMMG00000019456)	ENSMMMG00000019483	NPAS2 (ENSMMMG00000019487)	ENSMMMG00000019718	NMS (ENSMMMG00000019722)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.a #22
Squirrel	MODERN SPECIES	429													SEPTIN10 (ENSSTOG00000019829)	SH3RF3 (ENSSTOG00000003615)	EDAR (ENSSTOG00000023189)	ENSSTOG00000030045 #22	CCDC138 (ENSSTOG00000005244)	RANBP2 (ENSSTOG00000019518)	ENSSTOG00000015716	GCC2 (ENSSTOG00000028504)
Hystricomorpha	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.a #22
Naked mole-rat female	MODERN SPECIES	5	COPG2 (ENSHGLG00000007223)	TSGA13 (ENSHGLG00000006896)	KLF14 (ENSHGLG00000020618)	ENSHGLG00000033373	MKLN1 (ENSHGLG00000004137)	ENSHGLG00000003426	PLXNA4 (ENSHGLG00000015106)	ENSHGLG00000034427	ENSHGLG00000034429	ENSHGLG00000013082	ENSHGLG00000004322	LRGUK (ENSHGLG00000036972)	SLC35B4 (ENSHGLG00000045695)	ENSHGLG00000010140	ENSHGLG00000009099	ENSHGLG00000045523 #22	ENSHGLG00000048862	ENSHGLG00000041283	ENSHGLG00000015158	PPP1R17 (ENSHGLG00000046223)	ITPRID1 (ENSHGLG00000005782)	NEUROD6 (ENSHGLG00000049659)	ENSHGLG00000048770	ADCYAP1R1 (ENSHGLG00000005424)	ENSHGLG00000035477	AQP1 (ENSHGLG00000045736)	MINDY4 (ENSHGLG00000004247)	INMT (ENSHGLG00000035929)	ENSHGLG00000049417	CRHR2 (ENSHGLG00000018699)	GARS1 (ENSHGLG00000016342)
Rodentia_A	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.b #22
Sciuridae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.b #22
Marmotini	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.b #22
Alpin marmot	MODERN SPECIES		NAA20 (ENSMMMG00000003240)	CRNKL1 (ENSMMMG00000003244)	ENSMMMG00000003290	ENSMMMG00000003408	ENSMMMG00000003417	RALGAPA2 (ENSMMMG00000003453)	ENSMMMG00000003871	KIZ (ENSMMMG00000003881)	XRN2 (ENSMMMG00000004161)	NKX2-2 (ENSMMMG00000004284)	PAX1 (ENSMMMG00000004326)	FOXA2 (ENSMMMG00000004350)	SSTR4 (ENSMMMG00000004385)	THBD (ENSMMMG00000004391)	CD93 (ENSMMMG00000004395)	ENSMMMG00000004398 #22	NXT1 (ENSMMMG00000004405)	GZF1 (ENSMMMG00000004407)	NAPB (ENSMMMG00000004419)	ENSMMMG00000004433	CSTL1 (ENSMMMG00000004456)	CST11 (ENSMMMG00000004467)	ENSMMMG00000004483	ENSMMMG00000004491	CST8 (ENSMMMG00000004504)	ENSMMMG00000004513	ENSMMMG00000004523	ENSMMMG00000004528	ENSMMMG00000004547	SYNDIG1 (ENSMMMG00000004598)	CETN3 (ENSMMMG00000004670)
Marmotini_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.k.b #22
Arctic ground squirrel	MODERN SPECIES	114					ENSUPAG00010009220	KIZ (ENSUPAG00010009237)	XRN2 (ENSUPAG00010009667)	NKX2-4 (ENSUPAG00010009706)	NKX2-2 (ENSUPAG00010009710)	PAX1 (ENSUPAG00010009718)	ENSUPAG00010009726	FOXA2 (ENSUPAG00010009738)	SSTR4 (ENSUPAG00010009751)	THBD (ENSUPAG00010009753)	CD93 (ENSUPAG00010009758)	ENSUPAG00010009759 #22	ENSUPAG00010009772	NXT1 (ENSUPAG00010009776)	GZF1 (ENSUPAG00010009780)	NAPB (ENSUPAG00010009788)	ENSUPAG00010009850	ENSUPAG00010009855	CSTL1 (ENSUPAG00010009856)	CST11 (ENSUPAG00010009858)	ENSUPAG00010009872	ENSUPAG00010009878	CST8 (ENSUPAG00010009884)	ENSUPAG00010009895	ENSUPAG00010009902	ENSUPAG00010009918	ENSUPAG00010009934
Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.c.a ##13	ENSGT00940000170510	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Sciuridae	ANCESTRAL SPECIES	24	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.c.a ##13	ENSGT00940000170510	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001618 #23	ENSGT00390000001654.j #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303.a	ENSGT00950000182928.A.b
Marmotini	ANCESTRAL SPECIES	73	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.c.a.a ##13	ENSGT00940000170510	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001618 #23	ENSGT00390000001654.j #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Alpin marmot	MODERN SPECIES	101	PRKAB1 (ENSMMMG00000021359)	CIT (ENSMMMG00000021230) #9	BICDL1 (ENSMMMG00000021218) #10	RAB35 (ENSMMMG00000021212) #11	GCN1 (ENSMMMG00000021170) #12	ENSMMMG00000021163 ##13	ENSMMMG00000021161	ENSMMMG00000021140 #14	SIRT4 (ENSMMMG00000021122) #15	PLA2G1B (ENSMMMG00000021113) #16	MSI1 (ENSMMMG00000021106) #17	COX6A1 (ENSMMMG00000021098) #18	ENSMMMG00000021094 #19	GATC (ENSMMMG00000021090) #20	SRSF9 (ENSMMMG00000021084) #21	DYNLL1 (ENSMMMG00000021076) #22	COQ5 (ENSMMMG00000021065) #24	RNF10 (ENSMMMG00000021037) #25	POP5 (ENSMMMG00000021028) #26	ENSMMMG00000021011 #27	MLEC (ENSMMMG00000021005) #28	UNC119B (ENSMMMG00000020999) #29	ACADS (ENSMMMG00000020994) #30	SPPL3 (ENSMMMG00000020976) #31	HNF1A (ENSMMMG00000020965) #33	C12orf43 (ENSMMMG00000020954) #34	OASL (ENSMMMG00000020937) #35	ENSMMMG00000020930 ##35
Marmotini_b	ANCESTRAL SPECIES	101	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.c.a.a.a ##13	ENSGT00940000170510	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001618 #23	ENSGT00390000001654.j #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b.c #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Arctic ground squirrel	MODERN SPECIES	290	CIT (ENSUPAG00010017192) #9	BICDL1 (ENSUPAG00010017174) #10	RAB35 (ENSUPAG00010017163) #11	GCN1 (ENSUPAG00010017122) #12	ENSUPAG00010017116 ##13	ENSUPAG00010017112	PXN (ENSUPAG00010017089) #14	SIRT4 (ENSUPAG00010017061) #15	PLA2G1B (ENSUPAG00010017052) #16	ENSUPAG00010017050	MSI1 (ENSUPAG00010017036) #17	COX6A1 (ENSUPAG00010017023) #18	TRIAP1 (ENSUPAG00010017017) #19	GATC (ENSUPAG00010017011) #20	SRSF9 (ENSUPAG00010016997) #21	DYNLL1 (ENSUPAG00010016994) #22	ENSUPAG00010016987 #23	COQ5 (ENSUPAG00010016972) #24	RNF10 (ENSUPAG00010016864) #25	POP5 (ENSUPAG00010016859) #26	CABP1 (ENSUPAG00010016831) #27	MLEC (ENSUPAG00010016823) #28	ENSUPAG00010016786 #29	ACADS (ENSUPAG00010016764) #30	SPPL3 (ENSUPAG00010016723) #31	HNF1A (ENSUPAG00010016704) #33	C12orf43 (ENSUPAG00010016694) #34	OASL (ENSUPAG00010016669) #35	ENSUPAG00010016665 ##35
Squirrel	MODERN SPECIES	268	ENSSTOG00000025916	PRKAB1 (ENSSTOG00000008615)	CIT (ENSSTOG00000008634) #9	BICDL1 (ENSSTOG00000014021) #10	RAB35 (ENSSTOG00000014038) #11	GCN1 (ENSSTOG00000014045) #12	ENSSTOG00000011327 ##13	ENSSTOG00000014093 #14	SIRT4 (ENSSTOG00000009795) #15	PLA2G1B (ENSSTOG00000004258) #16	MSI1 (ENSSTOG00000009799) #17	COX6A1 (ENSSTOG00000023604) #18	TRIAP1 (ENSSTOG00000012553) #19	GATC (ENSSTOG00000025740) #20	SRSF9 (ENSSTOG00000007344) #21	DYNLL1 (ENSSTOG00000026447) #22	COQ5 (ENSSTOG00000012560) #24	RNF10 (ENSSTOG00000012565) #25	POP5 (ENSSTOG00000012577) #26	ENSSTOG00000027234 #27	MLEC (ENSSTOG00000003095) #28	ENSSTOG00000022751 #29	ACADS (ENSSTOG00000028932) #30	SPPL3 (ENSSTOG00000005019) #31	HNF1A (ENSSTOG00000004719) #33	C12orf43 (ENSSTOG00000004743) #34
Eurasian red squirrel	MODERN SPECIES	17	ENSSVLG00005009745	CIT (ENSSVLG00005009150) #9	ENSSVLG00005009004	BICDL1 (ENSSVLG00005008936) #10	ENSSVLG00005008862 #11	GCN1 (ENSSVLG00005008536) #12	ENSSVLG00005008367 ##13	PXN (ENSSVLG00005008164) #14	SIRT4 (ENSSVLG00005008089) #15	PLA2G1B (ENSSVLG00005008025) #16	MSI1 (ENSSVLG00005007951) #17	COX6A1 (ENSSVLG00005007927) #18	ENSSVLG00005007900 #19	GATC (ENSSVLG00005007876) #20	SRSF9 (ENSSVLG00005007838) #21	DYNLL1 (ENSSVLG00005007794) #22	COQ5 (ENSSVLG00005007727) #24	RNF10 (ENSSVLG00005007641) #25	POP5 (ENSSVLG00005007552) #26	CABP1 (ENSSVLG00005007451) #27	MLEC (ENSSVLG00005007381) #28	UNC119B (ENSSVLG00005007337) #29	ACADS (ENSSVLG00005007301) #30	SPPL3 (ENSSVLG00005007248) #31	HNF1A (ENSSVLG00005007118) #33	ENSSVLG00005007021 #34	OASL (ENSSVLG00005006906) #35	ENSSVLG00005006824 ##35	ENSSVLG00005006638	ENSSVLG00005006590	ENSSVLG00005006553
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000155049	ENSGT00390000003405
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	15	TMEM233 (ENSHGLG00000038208)	PRKAB1 (ENSHGLG00000007003)	CIT (ENSHGLG00000010569) #9	BICDL1 (ENSHGLG00000014394) #10	RAB35 (ENSHGLG00000012703) #11	GCN1 (ENSHGLG00000012548) #12	RPLP0 (ENSHGLG00000011358) #13	PXN (ENSHGLG00000010923) #14	SIRT4 (ENSHGLG00000014746) #15	PLA2G1B (ENSHGLG00000014412) #16	MSI1 (ENSHGLG00000040070) #17	COX6A1 (ENSHGLG00000038002) #18	ENSHGLG00000012057 #19	GATC (ENSHGLG00000011394) #20	SRSF9 (ENSHGLG00000038336) #21	DYNLL1 (ENSHGLG00000013536) #22	ENSHGLG00000034830	COQ5 (ENSHGLG00000038449) #24	ENSHGLG00000044841	RNF10 (ENSHGLG00000010890) #25	POP5 (ENSHGLG00000011786) #26	CABP1 (ENSHGLG00000010180) #27	MLEC (ENSHGLG00000013447) #28	UNC119B (ENSHGLG00000048493) #29	ACADS (ENSHGLG00000012611) #30	SPPL3 (ENSHGLG00000009179) #31	ENSHGLG00000034245	HNF1A (ENSHGLG00000007828) #33	C12orf43 (ENSHGLG00000044125) #34	ENSHGLG00000041259	ENSHGLG00000011746 #35
Naked mole-rat female	MODERN SPECIES	26	HPDL (ENSHGLG00000020661)	MUTYH (ENSHGLG00000001741)	TOE1 (ENSHGLG00000040523)	TESK2 (ENSHGLG00000007484)	MMACHC (ENSHGLG00000037299)	ENSHGLG00000001318	ENSHGLG00000001400	AKR1A1 (ENSHGLG00000002413)	ENSHGLG00000002419	CCDC17 (ENSHGLG00000001677)	ENSHGLG00000002490	TMEM69 (ENSHGLG00000001915)	IPP (ENSHGLG00000001994)	ENSHGLG00000040135	ENSHGLG00000001388	ENSHGLG00000045620 #22	MAST2 (ENSHGLG00000014177)	ENSHGLG00000001409	PIK3R3 (ENSHGLG00000001853)	P3R3URF (ENSHGLG00000001179)	TSPAN1 (ENSHGLG00000001782)	POMGNT1 (ENSHGLG00000002171)	LURAP1 (ENSHGLG00000043460)	ENSHGLG00000000753	LRRC41 (ENSHGLG00000001422)	ENSHGLG00000035869	ENSHGLG00000038747	ENSHGLG00000047081	ENSHGLG00000044714	FAAH (ENSHGLG00000041848)	DMBX1 (ENSHGLG00000000395)
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000156821.k.b	ENSGT00940000155049	ENSGT00390000003405.pb
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.l #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000156821.k.b	ENSGT00940000155049	ENSGT00390000003405.pb
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	120	PRKAB1 (ENSODEG00000006326)	CIT (ENSODEG00000006978) #9	ENSODEG00000019184	ENSODEG00000005856 #10	RAB35 (ENSODEG00000007219) #11	GCN1 (ENSODEG00000005719) #12	ENSODEG00000005457 ##13	ENSODEG00000005742 #14	SIRT4 (ENSODEG00000005972) #15	PLA2G1B (ENSODEG00000006112) #16	MSI1 (ENSODEG00000006328) #17	ENSODEG00000005584 #18	ENSODEG00000005787 #19	GATC (ENSODEG00000005919) #20	SRSF9 (ENSODEG00000006061) #21	ENSODEG00000006171 #22	COQ5 (ENSODEG00000006329) #24	RNF10 (ENSODEG00000007815) #25	ENSODEG00000006549 #26	ENSODEG00000006509 #27	MLEC (ENSODEG00000006857) #28	UNC119B (ENSODEG00000006951) #29	ACADS (ENSODEG00000008710) #30	SPPL3 (ENSODEG00000007014) #31	ENSODEG00000006851	HNF1A (ENSODEG00000007197) #33	C12orf43 (ENSODEG00000006506) #34	OASL (ENSODEG00000006970) #35	ENSODEG00000006462 ##35	ENSODEG00000006798	ENSODEG00000006773
Degu	MODERN SPECIES	70	MFAP3 (ENSODEG00000009031)	ENSODEG00000009084	GRIA1 (ENSODEG00000009490)	NMUR2 (ENSODEG00000009849)	GLRA1 (ENSODEG00000009543)	ENSODEG00000008869	ENSODEG00000019553	ENSODEG00000009104	SPARC (ENSODEG00000009746)	FAT2 (ENSODEG00000010366)	SLC36A1 (ENSODEG00000010341)	ENSODEG00000019626	SEC24A (ENSODEG00000008665)	SAR1B (ENSODEG00000009764)	JADE2 (ENSODEG00000009149)	ENSODEG00000019739 #22	ENSODEG00000008488	UBE2B (ENSODEG00000009143)	CDKL3 (ENSODEG00000009715)	ENSODEG00000019628	ENSODEG00000008982	ENSODEG00000008861	ENSODEG00000008274	TCF7 (ENSODEG00000013097)	ENSODEG00000008308	C5orf15 (ENSODEG00000010577)	FSTL4 (ENSODEG00000008162)	ENSODEG00000019458	HSPA4 (ENSODEG00000009493)	ZCCHC10 (ENSODEG00000008556)	AFF4 (ENSODEG00000008137)
Degu	DUPLICATION
Degu	MODERN SPECIES	45	NTN4 (ENSODEG00000009703)	SNRPF (ENSODEG00000010328)	CCDC38 (ENSODEG00000010228)	AMDHD1 (ENSODEG00000009067)	HAL (ENSODEG00000008759)	LTA4H (ENSODEG00000010622)	ENSODEG00000012546	CDK17 (ENSODEG00000012390)	ENSODEG00000013382	ENSODEG00000011350	ENSODEG00000014444	NEDD1 (ENSODEG00000009573)	ENSODEG00000011590	ENSODEG00000012494	ENSODEG00000010263	ENSODEG00000019742 #22	ENSODEG00000019648	ENSODEG00000013377	SLC25A3 (ENSODEG00000009995)	ENSODEG00000010948	APAF1 (ENSODEG00000010122)	ENSODEG00000019813	ENSODEG00000010313	ENSODEG00000010573	ENSODEG00000010991	ENSODEG00000010669	ENSODEG00000011572	BLTP3B (ENSODEG00000010196)	ENSODEG00000010649	ENSODEG00000011114	SLC17A8 (ENSODEG00000010869)
Degu	MODERN SPECIES	136	ENSODEG00000003169	ENSODEG00000003128	RFK (ENSODEG00000003081)	GCNT1 (ENSODEG00000018998)	ENSODEG00000003761	ENSODEG00000003738	ENSODEG00000018936	ENSODEG00000019009	FOXB2 (ENSODEG00000018997)	VPS13A (ENSODEG00000003608)	ENSODEG00000003546	GNA14 (ENSODEG00000003528)	ENSODEG00000003499	GNAQ (ENSODEG00000003488)	CEP78 (ENSODEG00000003443)	ENSODEG00000003423 #22	ENSODEG00000003369	ENSODEG00000018927	ENSODEG00000003341	ENSODEG00000018932	TLE4 (ENSODEG00000003247)	ENSODEG00000003198	ENSODEG00000003548	ENSODEG00000018925	ENSODEG00000018969	TLE1 (ENSODEG00000003417)
Long-tailed chinchilla	MODERN SPECIES	162	TMEM233 (ENSCLAG00000013093)	PRKAB1 (ENSCLAG00000009053)	CIT (ENSCLAG00000014860) #9	BICDL1 (ENSCLAG00000012595) #10	RAB35 (ENSCLAG00000013339) #11	GCN1 (ENSCLAG00000010466) #12	ENSCLAG00000014722 ##13	PXN (ENSCLAG00000016279) #14	SIRT4 (ENSCLAG00000010770) #15	PLA2G1B (ENSCLAG00000014353) #16	MSI1 (ENSCLAG00000011329) #17	COX6A1 (ENSCLAG00000013008) #18	TRIAP1 (ENSCLAG00000011307) #19	GATC (ENSCLAG00000011015) #20	SRSF9 (ENSCLAG00000012289) #21	DYNLL1 (ENSCLAG00000015769) #22	ENSCLAG00000010874	COQ5 (ENSCLAG00000011645) #24	RNF10 (ENSCLAG00000017372) #25	POP5 (ENSCLAG00000007808) #26	ENSCLAG00000008163 #27	MLEC (ENSCLAG00000010269) #28	UNC119B (ENSCLAG00000010518) #29	ACADS (ENSCLAG00000008872) #30	SPPL3 (ENSCLAG00000013014) #31	HNF1A (ENSCLAG00000010469) #33	C12orf43 (ENSCLAG00000014369) #34	OASL (ENSCLAG00000013631) #35	ENSCLAG00000012712 ##35	ENSCLAG00000011290	ACACB (ENSCLAG00000009339)
Guinea pig	MODERN SPECIES	4	ENSCPOG00000015636	CIT (ENSCPOG00000026104) #9	BICDL1 (ENSCPOG00000000402) #10	RAB35 (ENSCPOG00000000404) #11	GCN1 (ENSCPOG00000000406) #12	ENSCPOG00000021812 ##13	PXN (ENSCPOG00000000411) #14	ENSCPOG00000026308	SIRT4 (ENSCPOG00000012355) #15	PLA2G1B (ENSCPOG00000012358) #16	MSI1 (ENSCPOG00000012361) #17	COX6A1 (ENSCPOG00000036824) #18	TRIAP1 (ENSCPOG00000033275) #19	GATC (ENSCPOG00000026436) #20	SRSF9 (ENSCPOG00000033486) #21	DYNLL1 (ENSCPOG00000036786) #22	COQ5 (ENSCPOG00000031239) #24	RNF10 (ENSCPOG00000012331) #25	POP5 (ENSCPOG00000012337) #26	ENSCPOG00000025419 #27	MLEC (ENSCPOG00000014377) #28	UNC119B (ENSCPOG00000030623) #29	ACADS (ENSCPOG00000015423) #30	SPPL3 (ENSCPOG00000002418) #31	HNF1A (ENSCPOG00000007242) #33	C12orf43 (ENSCPOG00000037839) #34	OASL (ENSCPOG00000007251) #35	ENSCPOG00000038269 ##35	ENSCPOG00000031157	ACACB (ENSCPOG00000004635)	ENSCPOG00000004634
Rodentia_B	ANCESTRAL SPECIES	22	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Kangaroo rat	MODERN SPECIES	342	Srrm4 (ENSDORG00000015243)	Hspb8 (ENSDORG00000013686)	Prkab1 (ENSDORG00000028447)	Cit (ENSDORG00000014600) #9	Bicdl1 (ENSDORG00000000969) #10	Rab35 (ENSDORG00000000972) #11	Gcn1 (ENSDORG00000000975) #12	ENSDORG00000029016 ##13	ENSDORG00000023577 #14	Sirt4 (ENSDORG00000027939) #15	Pla2g1b (ENSDORG00000005190) #16	Msi1 (ENSDORG00000005610) #17	Cox6a1 (ENSDORG00000028878) #18	Triap1 (ENSDORG00000013157) #19	Srsf9 (ENSDORG00000013162) #21	ENSDORG00000030011 #22	Coq5 (ENSDORG00000006156) #24	ENSDORG00000029773	Rnf10 (ENSDORG00000006157) #25	Pop5 (ENSDORG00000029401) #26	ENSDORG00000028706	Mlec (ENSDORG00000026837) #28	Unc119b (ENSDORG00000023526) #29	Acads (ENSDORG00000004871) #30	Sppl3 (ENSDORG00000004872) #31	Hnf1a (ENSDORG00000007676) #33	Ankrd13a (ENSDORG00000008865)	Git2 (ENSDORG00000008863)	ENSDORG00000008861	Gltp (ENSDORG00000008704)	Trpv4 (ENSDORG00000006308)
Myomorpha	ANCESTRAL SPECIES	30	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	109	Tmem233 (ENSJJAG00000023958)	ENSJJAG00000003437	Cit (ENSJJAG00000021797) #9	Bicdl1 (ENSJJAG00000014990) #10	Rab35 (ENSJJAG00000010646) #11	Gcn1 (ENSJJAG00000018574) #12	ENSJJAG00000013250 ##13	ENSJJAG00000024166 #14	Sirt4 (ENSJJAG00000018872) #15	ENSJJAG00000010463 #17	Cox6a1 (ENSJJAG00000022385) #18	ENSJJAG00000017654 #19	Gatc (ENSJJAG00000000369) #20	Srsf9 (ENSJJAG00000013374) #21	ENSJJAG00000009686	ENSJJAG00000020596 #22	Coq5 (ENSJJAG00000021649) #24	Rnf10 (ENSJJAG00000018379) #25	Pop5 (ENSJJAG00000001080) #26	ENSJJAG00000021885 #27	ENSJJAG00000018770 #28	Unc119b (ENSJJAG00000024182) #29	Acads (ENSJJAG00000020198) #30	Sppl3 (ENSJJAG00000022924) #31	Hnf1a (ENSJJAG00000000462) #33	2210016L21Rik (ENSJJAG00000018859) #34	Oasl1 (ENSJJAG00000022289) #35	ENSJJAG00000022337	Ankrd13a (ENSJJAG00000013276)	Git2 (ENSJJAG00000016009)	ENSJJAG00000023867
Lesser Egyptian jerboa	MODERN SPECIES	50	ENSJJAG00000012674	Ch25h (ENSJJAG00000013038)	Lipa (ENSJJAG00000014976)	ENSJJAG00000010974	Ifit2 (ENSJJAG00000019071)	ENSJJAG00000024328	Slc16a12 (ENSJJAG00000013860)	Pank1 (ENSJJAG00000023788)	ENSJJAG00000018494	Kif20b (ENSJJAG00000013969)	ENSJJAG00000022465	ENSJJAG00000013447 ##13	Htr7 (ENSJJAG00000017934)	Rpp30 (ENSJJAG00000020041)	Ankrd1 (ENSJJAG00000005637)	ENSJJAG00000012541 #22	Pcgf5 (ENSJJAG00000019027)	Hectd2 (ENSJJAG00000002659)	Ppp1r3c (ENSJJAG00000023747)	Tnks2 (ENSJJAG00000024121)	ENSJJAG00000010510	Btaf1 (ENSJJAG00000016636)	Cpeb3 (ENSJJAG00000009135)	ENSJJAG00000023593	Ide (ENSJJAG00000019815)	Kif11 (ENSJJAG00000016860)	ENSJJAG00000000311	ENSJJAG00000022605	ENSJJAG00000021438	Exoc6 (ENSJJAG00000015045)	Cyp26c1 (ENSJJAG00000019909)
Lesser Egyptian jerboa	MODERN SPECIES	70	Emx2 (ENSJJAG00000016378)	Rab11fip2 (ENSJJAG00000013758)	ENSJJAG00000009898	Fam204a (ENSJJAG00000012691)	Prlhr (ENSJJAG00000010343)	Cacul1 (ENSJJAG00000017702)	Eif3a (ENSJJAG00000015031)	Dennd10 (ENSJJAG00000006686)	Sfxn4 (ENSJJAG00000009478)	Prdx3 (ENSJJAG00000023489)	Grk5 (ENSJJAG00000022251)	Rgs10 (ENSJJAG00000010554)	ENSJJAG00000015632	ENSJJAG00000005398	Bag3 (ENSJJAG00000013499)	ENSJJAG00000010122 #22	ENSJJAG00000016414	Inpp5f (ENSJJAG00000020126)	Mcmbp (ENSJJAG00000022939)	ENSJJAG00000021258	ENSJJAG00000014744	Plpp4 (ENSJJAG00000022845)	Wdr11 (ENSJJAG00000014160)	Fgfr2 (ENSJJAG00000012859)	Ate1 (ENSJJAG00000013127)	Nsmce4a (ENSJJAG00000020152)	ENSJJAG00000015501	Btbd16 (ENSJJAG00000012283)	Plekha1 (ENSJJAG00000019344)	Htra1 (ENSJJAG00000012131)	4933402N03Rik (ENSJJAG00000001575)
Muroidea	ANCESTRAL SPECIES	28	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	445			ENSNGAG00000022874 #10	Rab35 (ENSNGAG00000007255) #11	Gcn1 (ENSNGAG00000019286) #12	ENSNGAG00000024037 ##13	Pxn (ENSNGAG00000001212) #14	Sirt4 (ENSNGAG00000019284) #15	Pla2g1b (ENSNGAG00000022899) #16	Msi1 (ENSNGAG00000014508) #17	Cox6a1 (ENSNGAG00000005868) #18	Triap1 (ENSNGAG00000023480) #19	Gatc (ENSNGAG00000004734) #20	Srsf9 (ENSNGAG00000012738) #21	ENSNGAG00000013457	ENSNGAG00000023733 #22	Coq5 (ENSNGAG00000020139) #24	Rnf10 (ENSNGAG00000023924) #25	Pop5 (ENSNGAG00000002594) #26	ENSNGAG00000022386 #27	Mlec (ENSNGAG00000005925) #28	Unc119b (ENSNGAG00000018814) #29	Acads (ENSNGAG00000023567) #30	Sppl3 (ENSNGAG00000016114) #31	Hnf1a (ENSNGAG00000018019) #33	2210016L21Rik (ENSNGAG00000023852) #34	Oasl1 (ENSNGAG00000016822) #35	Oasl2 (ENSNGAG00000019818) ##35
Muroidea_A	ANCESTRAL SPECIES	21	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618.sb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303
Murinae	ANCESTRAL SPECIES	20	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618.sb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303
Mus	DUPLICATION
Mus	ANCESTRAL SPECIES	17	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.o #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00860000136082	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303
Mus_A	ANCESTRAL SPECIES	6	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a.d ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.o #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00860000136082	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00860000135768
Ryukyu mouse	MODERN SPECIES	14	Ccdc60 (MGP_CAROLIEiJ_G0027636)	Tmem233 (MGP_CAROLIEiJ_G0027635)	Prkab1 (MGP_CAROLIEiJ_G0027634)	Cit (MGP_CAROLIEiJ_G0027633) #9	Rab35 (MGP_CAROLIEiJ_G0027632) #11	Gcn1 (MGP_CAROLIEiJ_G0027631) #12	MGP_CAROLIEiJ_G0027630 ##13	MGP_CAROLIEiJ_G0027629 #14	Sirt4 (MGP_CAROLIEiJ_G0027628) #15	Pla2g1b (MGP_CAROLIEiJ_G0027627) #16	Msi1 (MGP_CAROLIEiJ_G0027626) #17	Cox6a1 (MGP_CAROLIEiJ_G0027625) #18	Triap1 (MGP_CAROLIEiJ_G0027624) #19	Gatc (MGP_CAROLIEiJ_G0027623) #20	Srsf9 (MGP_CAROLIEiJ_G0027622) #21	Dynll1 (MGP_CAROLIEiJ_G0027621) #22	Coq5 (MGP_CAROLIEiJ_G0027620) #24	Rnf10 (MGP_CAROLIEiJ_G0027619) #25	Pop5 (MGP_CAROLIEiJ_G0027618) #26	Cabp1 (MGP_CAROLIEiJ_G0027617) #27	Mlec (MGP_CAROLIEiJ_G0027616) #28	Unc119b (MGP_CAROLIEiJ_G0027615) #29	Acads (MGP_CAROLIEiJ_G0027614) #30	MGP_CAROLIEiJ_G0027613	Sppl3 (MGP_CAROLIEiJ_G0027612) #31	Hnf1a (MGP_CAROLIEiJ_G0027611) #33	2210016L21Rik (MGP_CAROLIEiJ_G0027610) #34	Oasl1 (MGP_CAROLIEiJ_G0027609) #35	Oasl2 (MGP_CAROLIEiJ_G0027608) ##35	MGP_CAROLIEiJ_G0027607	4930519G04Rik (MGP_CAROLIEiJ_G0027606)
Mus_B	ANCESTRAL SPECIES	4	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a.d ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.o #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00860000136082	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00860000135768
Mouse	MODERN SPECIES	14	Tmem233 (ENSMUSG00000079278)	Prkab1 (ENSMUSG00000029513)	Cit (ENSMUSG00000029516) #9	Bicdl1 (ENSMUSG00000041609) #10	Rab35 (ENSMUSG00000029518) #11	Gcn1 (ENSMUSG00000041638) #12	Rplp0 (ENSMUSG00000067274) ##13	Pxn (ENSMUSG00000029528) #14	Sirt4 (ENSMUSG00000029524) #15	Pla2g1b (ENSMUSG00000029522) #16	Msi1 (ENSMUSG00000054256) #17	Cox6a1 (ENSMUSG00000041697) #18	Triap1 (ENSMUSG00000029535) #19	Gatc (ENSMUSG00000029536) #20	Srsf9 (ENSMUSG00000029538) #21	Dynll1 (ENSMUSG00000009013) #22	Coq5 (ENSMUSG00000041733) #24	Rnf10 (ENSMUSG00000041740) #25	Pop5 (ENSMUSG00000060152) #26	Cabp1 (ENSMUSG00000029544) #27	Mlec (ENSMUSG00000048578) #28	Unc119b (ENSMUSG00000046562) #29	Acads (ENSMUSG00000029545) #30	Sppl3 (ENSMUSG00000029550) #31	Hnf1a (ENSMUSG00000029556) #33	2210016L21Rik (ENSMUSG00000029559) #34	Oasl1 (ENSMUSG00000041827) #35	Oasl2 (ENSMUSG00000029561) ##35	4930519G04Rik (ENSMUSG00000029564)	1500011B03Rik (ENSMUSG00000072694)	Ankrd13a (ENSMUSG00000041870)
Mus_C	ANCESTRAL SPECIES	4	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a.d ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00960000193046	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.o #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00860000136082	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00860000135768
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2439																ENSMSIG00000031419 #22	ENSMSIG00000031418 #23
Steppe mouse	MODERN SPECIES	3341		Lipc (ENSMSIG00000024928)	Adam10 (ENSMSIG00000024905)	ENSMSIG00000024899	Mindy2 (ENSMSIG00000024872)	ENSMSIG00000024868	Sltm (ENSMSIG00000024797)	Rnf111 (ENSMSIG00000024613)	Ccnb2 (ENSMSIG00000024583)	Myo1e (ENSMSIG00000024480)	Fam81a (ENSMSIG00000024458)	Gcnt3 (ENSMSIG00000024447)	Gtf2a2 (ENSMSIG00000024440)	Bnip2 (ENSMSIG00000024382)	Foxb1 (ENSMSIG00000024373)	ENSMSIG00000024362 #22	ENSMSIG00000024328	Ice2 (ENSMSIG00000024296)	Rora (ENSMSIG00000024229)	Vps13c (ENSMSIG00000023921)	C2cd4a (ENSMSIG00000023906)	C2cd4b (ENSMSIG00000023890)	Tln2 (ENSMSIG00000023708)	ENSMSIG00000023676	Tpm1 (ENSMSIG00000022438)	Lactb (ENSMSIG00000022397)	ENSMSIG00000022374	Rab8b (ENSMSIG00000022369)	Aph1c (ENSMSIG00000022355)	ENSMSIG00000022353	ENSMSIG00000022339
spretus	MODERN SPECIES	14	Tmem233 (MGP_SPRETEiJ_G0028634)	Prkab1 (MGP_SPRETEiJ_G0028633)	Cit (MGP_SPRETEiJ_G0028632) #9	Bicdl1 (MGP_SPRETEiJ_G0028631) #10	Rab35 (MGP_SPRETEiJ_G0028630) #11	Gcn1 (MGP_SPRETEiJ_G0028629) #12	MGP_SPRETEiJ_G0028628 ##13	MGP_SPRETEiJ_G0028627 #14	Sirt4 (MGP_SPRETEiJ_G0028626) #15	Pla2g1b (MGP_SPRETEiJ_G0028625) #16	Msi1 (MGP_SPRETEiJ_G0028624) #17	Cox6a1 (MGP_SPRETEiJ_G0028623) #18	Triap1 (MGP_SPRETEiJ_G0028622) #19	Gatc (MGP_SPRETEiJ_G0028621) #20	Srsf9 (MGP_SPRETEiJ_G0028620) #21	Dynll1 (MGP_SPRETEiJ_G0028619) #22	Coq5 (MGP_SPRETEiJ_G0028618) #24	Rnf10 (MGP_SPRETEiJ_G0028617) #25	Pop5 (MGP_SPRETEiJ_G0028616) #26	Cabp1 (MGP_SPRETEiJ_G0028615) #27	Mlec (MGP_SPRETEiJ_G0028614) #28	Unc119b (MGP_SPRETEiJ_G0028613) #29	Acads (MGP_SPRETEiJ_G0028612) #30	MGP_SPRETEiJ_G0028611	Sppl3 (MGP_SPRETEiJ_G0028610) #31	Hnf1a (MGP_SPRETEiJ_G0028609) #33	2210016L21Rik (MGP_SPRETEiJ_G0028608) #34	Oasl1 (MGP_SPRETEiJ_G0028607) #35	Oasl2 (MGP_SPRETEiJ_G0028606) ##35	MGP_SPRETEiJ_G0028605	4930519G04Rik (MGP_SPRETEiJ_G0028604)
Shrew mouse	MODERN SPECIES	15	Tmem233 (MGP_PahariEiJ_G0024216)	Prkab1 (MGP_PahariEiJ_G0024215)	Cit (MGP_PahariEiJ_G0024214) #9	Bicdl1 (MGP_PahariEiJ_G0024213) #10	Rab35 (MGP_PahariEiJ_G0024212) #11	Gcn1 (MGP_PahariEiJ_G0024211) #12	MGP_PahariEiJ_G0024210 ##13	MGP_PahariEiJ_G0024209 #14	Sirt4 (MGP_PahariEiJ_G0024208) #15	Pla2g1b (MGP_PahariEiJ_G0024207) #16	Msi1 (MGP_PahariEiJ_G0024206) #17	Cox6a1 (MGP_PahariEiJ_G0024205) #18	Triap1 (MGP_PahariEiJ_G0024204) #19	Gatc (MGP_PahariEiJ_G0024203) #20	MGP_PahariEiJ_G0024202 #21	Dynll1 (MGP_PahariEiJ_G0024201) #22	MGP_PahariEiJ_G0024200 #24	Rnf10 (MGP_PahariEiJ_G0024199) #25	Pop5 (MGP_PahariEiJ_G0024198) #26	Cabp1 (MGP_PahariEiJ_G0024197) #27	Mlec (MGP_PahariEiJ_G0024196) #28	Unc119b (MGP_PahariEiJ_G0024195) #29	Acads (MGP_PahariEiJ_G0024194) #30	MGP_PahariEiJ_G0024193	Sppl3 (MGP_PahariEiJ_G0024192) #31	Hnf1a (MGP_PahariEiJ_G0024191) #33	MGP_PahariEiJ_G0024190 #34	Oasl1 (MGP_PahariEiJ_G0024189) #35	MGP_PahariEiJ_G0024188	MGP_PahariEiJ_G0024187	MGP_PahariEiJ_G0024186
Mus	ANCESTRAL SPECIES	22	ENSGT00940000154251.A.h.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.b.a	ENSGT00940000155274.a.b.c.a.b.b	ENSGT00940000154251.A.h.b	ENSGT00940000153165.a.b.a.a.a.b.a.b.b	ENSGT00940000155274.a.b.c.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a	ENSGT00390000000378.d.b.p #22	ENSGT00940000155822	ENSGT01030000234607.A.a.a.a	ENSGT00390000015121	ENSGT00940000156424	ENSGT00940000157811	ENSGT00950000182886.b.b	ENSGT00940000153665.a	ENSGT00940000161612	ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000159433	ENSGT00860000135976	ENSGT00940000160429	ENSGT00940000161198	ENSGT00940000158596
Mus_A	ANCESTRAL SPECIES	14	ENSGT00940000154251.A.h.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.b.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.b.b	ENSGT00940000155274.a.b.c.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000169481	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00390000000378.d.b.p #22	ENSGT00940000155822	ENSGT01030000234607.A.a.a.a	ENSGT00390000015121	ENSGT00940000156424	ENSGT00940000157811	ENSGT00950000182886.b.b	ENSGT00940000153665.a	ENSGT00940000161612	ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000159433	ENSGT00860000135976	ENSGT00940000160429	ENSGT00940000161198	ENSGT00940000158596
Mus_B	ANCESTRAL SPECIES	13	ENSGT00940000154251.A.h.b	ENSGT00940000154251.A.h.a.a.b	ENSGT00940000154251.A.h.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.b.a.b.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.a.d	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000169481	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00390000000378.d.b.p #22	ENSGT00940000155822	ENSGT01030000234607.A.a.a.a	ENSGT00390000015121	ENSGT00940000156424	ENSGT00940000157811	ENSGT00950000182886.b.b	ENSGT00940000153665.a	ENSGT00940000161612	ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000159433	ENSGT00860000135976	ENSGT00940000160429	ENSGT00940000161198	ENSGT00940000158596
Mus_C	ANCESTRAL SPECIES	10	ENSGT00940000155274.a.b.c.a.b.b	ENSGT00940000154251.A.h.b	ENSGT00940000154251.A.h.a.a.b	ENSGT00940000154251.A.h.a.a.a.a	ENSGT01100000263507.D.a.b.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.a.d	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000169481	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00390000000378.d.b.p #22	ENSGT00940000155822	ENSGT01030000234607.A.a.a.a	ENSGT00390000015121	ENSGT00940000156424	ENSGT00940000157811	ENSGT00950000182886.b.b	ENSGT00940000153665.a	ENSGT00940000161612	ENSGT00390000014501	ENSGT00950000183199.b	ENSGT00940000159433	ENSGT00860000135976	ENSGT00940000160429	ENSGT00940000161198	ENSGT00940000158596
Steppe mouse	MODERN SPECIES	1718															ENSMSIG00000023120	BC048507 (ENSMSIG00000023176) #22
spretus	MODERN SPECIES	4	MGP_SPRETEiJ_G0019552	Zfp953 (MGP_SPRETEiJ_G0019553)	MGP_SPRETEiJ_G0019554	MGP_SPRETEiJ_G0019555	MGP_SPRETEiJ_G0019556	Zfp58 (MGP_SPRETEiJ_G0019557)	MGP_SPRETEiJ_G0019558	Zfp87 (MGP_SPRETEiJ_G0019559)	Zfp748 (MGP_SPRETEiJ_G0019560)	MGP_SPRETEiJ_G0019562	MGP_SPRETEiJ_G0019563	Zfp65 (MGP_SPRETEiJ_G0019564)	MGP_SPRETEiJ_G0019565	Zfp493 (MGP_SPRETEiJ_G0019566)	MGP_SPRETEiJ_G0019567	BC048507 (MGP_SPRETEiJ_G0019568) #22	Mtrr (MGP_SPRETEiJ_G0019569)	Fastkd3 (MGP_SPRETEiJ_G0019570)	Cfap90 (MGP_SPRETEiJ_G0019571)	Adcy2 (MGP_SPRETEiJ_G0019572)	Tent4a (MGP_SPRETEiJ_G0019573)	Nsun2 (MGP_SPRETEiJ_G0019574)	Srd5a1 (MGP_SPRETEiJ_G0019575)	MGP_SPRETEiJ_G0019576	MGP_SPRETEiJ_G0019577	Ice1 (MGP_SPRETEiJ_G0019578)	Adamts16 (MGP_SPRETEiJ_G0019579)	MGP_SPRETEiJ_G0019580	Irx1 (MGP_SPRETEiJ_G0019581)	Irx2 (MGP_SPRETEiJ_G0019582)	Irx4 (MGP_SPRETEiJ_G0019583)
Mouse	MODERN SPECIES	4	Zfp429 (ENSMUSG00000078994)	Zfp459 (ENSMUSG00000055560)	Zfp874a (ENSMUSG00000069206)	Zfp874b (ENSMUSG00000059839)	Zfp58 (ENSMUSG00000071291)	Zfp87 (ENSMUSG00000097333)	Zfp748 (ENSMUSG00000095432)	Zfp729b (ENSMUSG00000058093)	Zfp729a (ENSMUSG00000021510)	Zfp738 (ENSMUSG00000048280)	Zfp65 (ENSMUSG00000071281)	Zfp85 (ENSMUSG00000058331)	Zfp493 (ENSMUSG00000090659)	Zfp273 (ENSMUSG00000030446)	Gm10037 (ENSMUSG00000058246)	BC048507 (ENSMUSG00000064063) #22	Mtrr (ENSMUSG00000034617)	Fastkd3 (ENSMUSG00000021532)	Cfap90 (ENSMUSG00000021534)	Adcy2 (ENSMUSG00000021536)	Tent4a (ENSMUSG00000034575)	Nsun2 (ENSMUSG00000021595)	Srd5a1 (ENSMUSG00000021594)	Ube2ql1 (ENSMUSG00000052981)	Med10 (ENSMUSG00000021598)	Ice1 (ENSMUSG00000034525)	Adamts16 (ENSMUSG00000049538)	Irx1 (ENSMUSG00000060969)	Irx2 (ENSMUSG00000001504)	Irx4 (ENSMUSG00000021604)	Ndufs6 (ENSMUSG00000021606)
Ryukyu mouse	MODERN SPECIES	4	MGP_CAROLIEiJ_G0018669	MGP_CAROLIEiJ_G0018670	MGP_CAROLIEiJ_G0018671	MGP_CAROLIEiJ_G0018672	MGP_CAROLIEiJ_G0018673	Zfp58 (MGP_CAROLIEiJ_G0018674)	MGP_CAROLIEiJ_G0018675	Zfp87 (MGP_CAROLIEiJ_G0018676)	Zfp748 (MGP_CAROLIEiJ_G0018677)	Zfp729b (MGP_CAROLIEiJ_G0018678)	Zfp729a (MGP_CAROLIEiJ_G0018679)	MGP_CAROLIEiJ_G0018680	MGP_CAROLIEiJ_G0018681	Zfp85 (MGP_CAROLIEiJ_G0018682)	Zfp493 (MGP_CAROLIEiJ_G0018683)	BC048507 (MGP_CAROLIEiJ_G0018684) #22	Mtrr (MGP_CAROLIEiJ_G0018685)	Fastkd3 (MGP_CAROLIEiJ_G0018686)	Cfap90 (MGP_CAROLIEiJ_G0018687)	Adcy2 (MGP_CAROLIEiJ_G0018688)	Tent4a (MGP_CAROLIEiJ_G0018689)	Nsun2 (MGP_CAROLIEiJ_G0018690)	Srd5a1 (MGP_CAROLIEiJ_G0018691)	Ube2ql1 (MGP_CAROLIEiJ_G0018692)	MGP_CAROLIEiJ_G0018693	Ice1 (MGP_CAROLIEiJ_G0018694)	Adamts16 (MGP_CAROLIEiJ_G0018695)	MGP_CAROLIEiJ_G0018696	Irx1 (MGP_CAROLIEiJ_G0018697)	Irx2 (MGP_CAROLIEiJ_G0018698)	Irx4 (MGP_CAROLIEiJ_G0018699)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0015750	MGP_PahariEiJ_G0015751	MGP_PahariEiJ_G0015752	Zfp58 (MGP_PahariEiJ_G0015753)	MGP_PahariEiJ_G0015754	Zfp87 (MGP_PahariEiJ_G0015755)	Zfp748 (MGP_PahariEiJ_G0015756)	Zfp729b (MGP_PahariEiJ_G0015757)	MGP_PahariEiJ_G0015758	MGP_PahariEiJ_G0015759	Zfp729a (MGP_PahariEiJ_G0015760)	MGP_PahariEiJ_G0015761	Zfp493 (MGP_PahariEiJ_G0015762)	MGP_PahariEiJ_G0015763	MGP_PahariEiJ_G0015764	BC048507 (MGP_PahariEiJ_G0015765) #22	Mtrr (MGP_PahariEiJ_G0015766)	Fastkd3 (MGP_PahariEiJ_G0015767)	Cfap90 (MGP_PahariEiJ_G0015768)	Adcy2 (MGP_PahariEiJ_G0015769)	Tent4a (MGP_PahariEiJ_G0015770)	Nsun2 (MGP_PahariEiJ_G0015771)	Srd5a1 (MGP_PahariEiJ_G0015772)	Ube2ql1 (MGP_PahariEiJ_G0015773)	MGP_PahariEiJ_G0015774	Ice1 (MGP_PahariEiJ_G0015775)	Adamts16 (MGP_PahariEiJ_G0015776)	MGP_PahariEiJ_G0015777	Irx1 (MGP_PahariEiJ_G0015778)	Irx2 (MGP_PahariEiJ_G0015779)	Irx4 (MGP_PahariEiJ_G0015780)
Rat	DUPLICATION
Rat	DUPLICATION
Rat	MODERN SPECIES	3	Tmem233 (ENSRNOG00000053974)	Prkab1 (ENSRNOG00000001142)	Cit (ENSRNOG00000001143) #9	Bicdl1 (ENSRNOG00000056955) #10	Rab35 (ENSRNOG00000022014) #11	Gcn1 (ENSRNOG00000021871) #12	Rplp0 (ENSRNOG00000001148) ##13	Pxn (ENSRNOG00000001149) #14	Sirt4 (ENSRNOG00000001151) #15	Pla2g1b (ENSRNOG00000001153) #16	Msi1 (ENSRNOG00000001156) #17	Cox6a1 (ENSRNOG00000001170) #18	Triap1 (ENSRNOG00000001160) #19	Gatc (ENSRNOG00000045621) #20	Srsf9 (ENSRNOG00000001163) #21	Dynll1 (ENSRNOG00000011222) #22	ENSRNOG00000068496 #23	Coq5 (ENSRNOG00000001171) #24	Rnf10 (ENSRNOG00000001172) #25	Pop5 (ENSRNOG00000001199) #26	Cabp1 (ENSRNOG00000001173) #27	Mlec (ENSRNOG00000064601) #28	Unc119b (ENSRNOG00000021725) #29	Acads (ENSRNOG00000001177) #30	Sppl3 (ENSRNOG00000001178) #31	Hnf1a (ENSRNOG00000001183) #33	C12h12orf43 (ENSRNOG00000001185) #34	Oasl (ENSRNOG00000001187) #35	Oasl2 (ENSRNOG00000028814) ##35	LOC691311 (ENSRNOG00000021364)	ENSRNOG00000066080
Rat	MODERN SPECIES	1							Abcc1 (ENSRNOG00000022305)	ENSRNOG00000064754	Cep20 (ENSRNOG00000053230)	Myh11 (ENSRNOG00000057880)	Nde1 (ENSRNOG00000058007)	Marf1 (ENSRNOG00000056248)	Ercc4l1 (ENSRNOG00000065745)	Mrtfb (ENSRNOG00000066694)	Parn (ENSRNOG00000002912)	LOC679822 (ENSRNOG00000061035) #22	ENSRNOG00000067470	Bfar (ENSRNOG00000003151)	Pla2g10 (ENSRNOG00000003164)	Bmerb1 (ENSRNOG00000003198)	Mpv17l (ENSRNOG00000003285)	Pdxdc1 (ENSRNOG00000002407)	Rrn3 (ENSRNOG00000003326)	AABR07028997.1 (ENSRNOG00000057978)	RGD1565158 (ENSRNOG00000040121)	Ercc4 (ENSRNOG00000070542)	ENSRNOG00000070353	LOC120095010 (ENSRNOG00000032482)	Shisa9 (ENSRNOG00000063400)	Cpped1 (ENSRNOG00000015118)	Snx29 (ENSRNOG00000002294)
Rat	MODERN SPECIES	18	Lca5 (ENSRNOG00000009580)	Hmgn3 (ENSRNOG00000031032)	Phip (ENSRNOG00000008652)	Irak1bp1 (ENSRNOG00000008984)	Mei4 (ENSRNOG00000023794)	Htr1b (ENSRNOG00000013042)	Impg1 (ENSRNOG00000012479)	Myo6 (ENSRNOG00000011852)	Senp6 (ENSRNOG00000024336)	Filip1 (ENSRNOG00000011521)	Tmem30a (ENSRNOG00000010895)	ENSRNOG00000010657	Cox7a2 (ENSRNOG00000042903)	LOC103690438 (ENSRNOG00000062056)	Col12a1 (ENSRNOG00000058470)	LOC100363141 (ENSRNOG00000063215) #22	LOC100363141 (ENSRNOG00000056662) #23	ENSRNOG00000031132	Cd109 (ENSRNOG00000025332)	Eef1a1 (ENSRNOG00000009439)	ENSRNOG00000070285	Mto1 (ENSRNOG00000037659)	Cgas (ENSRNOG00000046191)	Ddx43 (ENSRNOG00000050868)	AABR07070824.1 (ENSRNOG00000050216)	Ooep (ENSRNOG00000025957)	RGD1559995 (ENSRNOG00000000199)	Gsta2 (ENSRNOG00000029861)	AABR07070816.3 (ENSRNOG00000056051)	Gsta5 (ENSRNOG00000000201)	Gsta4 (ENSRNOG00000030449)
Rat	MODERN SPECIES		Crx (ENSRNOG00000013890)	Crxos1 (ENSRNOG00000038251)	LOC100360843 (ENSRNOG00000033146)	LOC100364427 (ENSRNOG00000062534)	Rpl9 (ENSRNOG00000028449)	Nop53 (ENSRNOG00000013023)	Ehd2 (ENSRNOG00000011346)	Bicra (ENSRNOG00000011262)	Zfp541 (ENSRNOG00000021800)	Napa (ENSRNOG00000001494)	Slc8a2 (ENSRNOG00000001492)	Meis3 (ENSRNOG00000021390)	Dhx34 (ENSRNOG00000047575)	AABR07002627.1 (ENSRNOG00000060587)	C5ar2 (ENSRNOG00000049028)	ENSRNOG00000066925 #22	Inafm1 (ENSRNOG00000048848)	Bbc3 (ENSRNOG00000062473)	Sae1 (ENSRNOG00000015128)	Zc3h4 (ENSRNOG00000015229)	Tmem160 (ENSRNOG00000015304)	Npas1 (ENSRNOG00000015376)	Arhgap35 (ENSRNOG00000015852)	Gng5 (ENSRNOG00000063636)	LOC102550403 (ENSRNOG00000065825)	LOC108349752 (ENSRNOG00000028617)	Ceacam9 (ENSRNOG00000046915)	Ap2s1 (ENSRNOG00000015865)	LOC679748 (ENSRNOG00000034106)	Slc1a5 (ENSRNOG00000015948)	Fkrp (ENSRNOG00000016055)
Cricetidae	ANCESTRAL SPECIES	20	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A.u #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618.sb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303
Cricetinae	DUPLICATION
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.u #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.t #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303	ENSGT00950000182928.A.b
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	704	ENSMAUG00000017719	ENSMAUG00000013898 #9	ENSMAUG00000016718 #9	Bicdl1 (ENSMAUG00000012680) #10	Rab35 (ENSMAUG00000009328) #11	Gcn1 (ENSMAUG00000010431) #12	ENSMAUG00000020622	Pxn (ENSMAUG00000013582) #14	Sirt4 (ENSMAUG00000010509) #15	Pla2g1b (ENSMAUG00000002929) #16	Msi1 (ENSMAUG00000016820) #17	ENSMAUG00000015008 #18	Triap1 (ENSMAUG00000014091) #19	Gatc (ENSMAUG00000012756) #20	Srsf9 (ENSMAUG00000011403) #21	ENSMAUG00000009393 #22	Coq5 (ENSMAUG00000007966) #24	Rnf10 (ENSMAUG00000020544) #25	Pop5 (ENSMAUG00000019670) #26	ENSMAUG00000018955 #27	Mlec (ENSMAUG00000000215) #28	Unc119b (ENSMAUG00000020217) #29	Acads (ENSMAUG00000014711) #30	Sppl3 (ENSMAUG00000011290) #31	Hnf1a (ENSMAUG00000019909) #33	2210016L21Rik (ENSMAUG00000021072) #34	ENSMAUG00000018493 ##35	ENSMAUG00000000936 ##35	ENSMAUG00000012403	ENSMAUG00000008365	ENSMAUG00000014735
Golden Hamster	MODERN SPECIES	730	ENSMAUG00000002748	Ubxn6 (ENSMAUG00000009388)	Chaf1a (ENSMAUG00000011198)	Sh3gl1 (ENSMAUG00000010873)	Mpnd (ENSMAUG00000021460)	Stap2 (ENSMAUG00000008549)	Fsd1 (ENSMAUG00000014625)	Shd (ENSMAUG00000015964)	Yju2 (ENSMAUG00000019678)	Ebi3 (ENSMAUG00000010362)	Zfp563 (ENSMAUG00000008148)	ENSMAUG00000013756	ENSMAUG00000013255	Zfp101 (ENSMAUG00000019344)	ENSMAUG00000016015 #23	ENSMAUG00000008734 #22	ENSMAUG00000010437
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	130	Gcn1 (ENSCGRG00001005500) #12	ENSCGRG00001023247 ##13	Pxn (ENSCGRG00001010481) #14	SIRT4 (ENSCGRG00001024733) #15	ENSCGRG00001024937	ENSCGRG00001008684	ENSCGRG00001016265 #16	ENSCGRG00001005863 #16	ENSCGRG00001010219 #16	ENSCGRG00001012740 #16	Msi1 (ENSCGRG00001018883) #17	Cox6a1 (ENSCGRG00001021684) #18	Triap1 (ENSCGRG00001021863) #19	ENSCGRG00001019220 #20	Srsf9 (ENSCGRG00001021965) #21	ENSCGRG00001022287 #22	COQ5 (ENSCGRG00001009849) #24	Rnf10 (ENSCGRG00001012342) #25	Pop5 (ENSCGRG00001017974) #26	Cabp1 (ENSCGRG00001018949) #27	Mlec (ENSCGRG00001022314) #28	Unc119b (ENSCGRG00001023757) #29	Acads (ENSCGRG00001014770) #30	Sppl3 (ENSCGRG00001022277) #31	Hnf1a (ENSCGRG00001014884) #33	2210016L21Rik (ENSCGRG00001017554) #34	Oasl1 (ENSCGRG00001021080) #35	Oasl2 (ENSCGRG00001017055) ##35	4930519G04Rik (ENSCGRG00001007212)	ENSCGRG00001014625	Ankrd13a (ENSCGRG00001017556)
Chinese hamster chok1gshd	MODERN SPECIES	1	Mtx3 (ENSCGRG00001011412)	ENSCGRG00001008349	Cmya5 (ENSCGRG00001003968)	Tent2 (ENSCGRG00001009951)	Homer1 (ENSCGRG00001013582)	Jmy (ENSCGRG00001018071)	ENSCGRG00001019116	Bhmt2 (ENSCGRG00001007704)	Dmgdh (ENSCGRG00001014647)	Arsb (ENSCGRG00001015736)	Lhfpl2 (ENSCGRG00001003627)	Scamp1 (ENSCGRG00001004428)	Ap3b1 (ENSCGRG00001009397)	Tbca (ENSCGRG00001021971)	Otp (ENSCGRG00001022392)	ENSCGRG00001008932 #22	Wdr41 (ENSCGRG00001008129)	Pde8b (ENSCGRG00001015606)	Zbed3 (ENSCGRG00001010271)	Aggf1 (ENSCGRG00001017039)	Crhbp (ENSCGRG00001008314)	S100z (ENSCGRG00001009971)	F2rl1 (ENSCGRG00001012796)	F2r (ENSCGRG00001016531)	Iqgap2 (ENSCGRG00001019858)	F2rl2 (ENSCGRG00001014616)	Sv2c (ENSCGRG00001015770)	Poc5 (ENSCGRG00001015817)	Ankdd1b (ENSCGRG00001016471)	ENSCGRG00001012277	Polk (ENSCGRG00001013007)
Cricetinae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.u #22
Golden Hamster	DUPLICATION
Golden Hamster	MODERN SPECIES	684	Nf1 (ENSMAUG00000021534)	Rab11fip4 (ENSMAUG00000012204)	Utp6 (ENSMAUG00000021895)	Suz12 (ENSMAUG00000001677)	Crlf3 (ENSMAUG00000001238)	Atad5 (ENSMAUG00000019548)	Tefm (ENSMAUG00000006565)	Adap2 (ENSMAUG00000001797)	ENSMAUG00000022173	Rhot1 (ENSMAUG00000021776)	Rhbdl3 (ENSMAUG00000020013)	5730455P16Rik (ENSMAUG00000007002)	Zfp207 (ENSMAUG00000008892)	Psmd11 (ENSMAUG00000019073)	Cdk5r1 (ENSMAUG00000021140)	ENSMAUG00000009545 #22	Myo1d (ENSMAUG00000013009)	Tmem98 (ENSMAUG00000012837)	Spaca3 (ENSMAUG00000018445)	Asic2 (ENSMAUG00000010967)	Ccl2 (ENSMAUG00000020623)	ENSMAUG00000012536	Ccl7 (ENSMAUG00000011314)	Ccl11 (ENSMAUG00000015725)	Ccl12 (ENSMAUG00000013327)	Ccl8 (ENSMAUG00000018176)	ENSMAUG00000013646	Tmem132e (ENSMAUG00000016009)	Cct6b (ENSMAUG00000001673)	Zfp830 (ENSMAUG00000012194)	Lig3 (ENSMAUG00000020082)
Golden Hamster	MODERN SPECIES	621	Zbtb2 (ENSMAUG00000008627)	Rmnd1 (ENSMAUG00000011585)	Armt1 (ENSMAUG00000012945)	Ccdc170 (ENSMAUG00000008640)	Esr1 (ENSMAUG00000006785)	ENSMAUG00000014937	ENSMAUG00000012320	ENSMAUG00000019847	Myct1 (ENSMAUG00000014906)	Vip (ENSMAUG00000014470)	Fbxo5 (ENSMAUG00000000824)	Mtrf1l (ENSMAUG00000017702)	ENSMAUG00000021559	Oprm1 (ENSMAUG00000016741)	Ipcef1 (ENSMAUG00000020692)	ENSMAUG00000008972 #22	Cnksr3 (ENSMAUG00000017992)	Scaf8 (ENSMAUG00000009513)	Tiam2 (ENSMAUG00000016491)	Tfb1m (ENSMAUG00000006705)	ENSMAUG00000009291	Nox3 (ENSMAUG00000013920)	ENSMAUG00000015104	Arid1b (ENSMAUG00000017697)	Tmem242 (ENSMAUG00000006231)	Zdhhc14 (ENSMAUG00000018645)	Snx9 (ENSMAUG00000010656)	Synj2 (ENSMAUG00000022212)	Serac1 (ENSMAUG00000004954)	Gtf2h5 (ENSMAUG00000021477)	Tulp4 (ENSMAUG00000003623)
Chinese hamster chok1gshd	MODERN SPECIES	317	Prss47 (ENSCGRG00001011133)	ENSCGRG00001000347	Spata31 (ENSCGRG00001024965)	Cntnap3 (ENSCGRG00001012388)	Fam240b (ENSCGRG00001020040)	Cdk20 (ENSCGRG00001001834)	Ctsl (ENSCGRG00001023416)	Prxl2c (ENSCGRG00001003859)	ENSCGRG00001002667	Cdc14b (ENSCGRG00001019066)	Habp4 (ENSCGRG00001025040)	Zfp367 (ENSCGRG00001022531)	Slc35d2 (ENSCGRG00001020192)	Hsd17b3 (ENSCGRG00001009870)	ENSCGRG00001022738	ENSCGRG00001008618 #22	Ptch1 (ENSCGRG00001010176)	Fancc (ENSCGRG00001013491)	Aopep (ENSCGRG00001012713)	Fbp1 (ENSCGRG00001009150)	Fbp2 (ENSCGRG00001022515)	Cts8 (ENSCGRG00001013704)	Cts6 (ENSCGRG00001022925)	Ctsq (ENSCGRG00001002399)	Ctsj (ENSCGRG00001024764)	ENSCGRG00001015895	ENSCGRG00001024602	4930486L24Rik (ENSCGRG00001023066)	ENSCGRG00001019274	ENSCGRG00001014152	BC051665 (ENSCGRG00001008665)
Cricetidae_B	ANCESTRAL SPECIES	19	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.b.b.a.a.a ##13	ENSGT00940000158897 #14	ENSGT00960000191875	ENSGT00940000158891 #15	ENSGT00940000154885.A.u #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618.sb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00520000060299	ENSGT00530000065303
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	15	Pxn (ENSPEMG00000006601) #14	ENSPEMG00000025717	Sirt4 (ENSPEMG00000008498) #15	ENSPEMG00000025319	ENSPEMG00000030171 #16	ENSPEMG00000027736 #16	ENSPEMG00000024349 #16	ENSPEMG00000027796 #16	ENSPEMG00000031062	ENSPEMG00000031420 #16	Msi1 (ENSPEMG00000010491) #17	ENSPEMG00000017519 #18	Triap1 (ENSPEMG00000027703) #19	Gatc (ENSPEMG00000000665) #20	Srsf9 (ENSPEMG00000016311) #21	ENSPEMG00000026556 #22	ENSPEMG00000029581 #23	Coq5 (ENSPEMG00000011721) #24	Rnf10 (ENSPEMG00000009023) #25	Pop5 (ENSPEMG00000017493) #26	ENSPEMG00000018552 #27	Mlec (ENSPEMG00000001293) #28	Unc119b (ENSPEMG00000025219) #29	Acads (ENSPEMG00000009400) #30	Sppl3 (ENSPEMG00000010775) #31	Hnf1a (ENSPEMG00000015189) #33	2210016L21Rik (ENSPEMG00000010888) #34	Oasl1 (ENSPEMG00000016063) #35	Oasl2 (ENSPEMG00000002563) ##35	4930519G04Rik (ENSPEMG00000011144)	ENSPEMG00000013463
Northern American deer mouse	MODERN SPECIES	4	Zfp142 (ENSPEMG00000000784)	Plcd4 (ENSPEMG00000016923)	Cnot9 (ENSPEMG00000014045)	Usp37 (ENSPEMG00000002989)	Vil1 (ENSPEMG00000012484)	Ctdsp1 (ENSPEMG00000025369)	Slc11a1 (ENSPEMG00000000568)	ENSPEMG00000031268	Pnkd (ENSPEMG00000010689)	Tmbim1 (ENSPEMG00000009661)	Aamp (ENSPEMG00000013785)	Gpbar1 (ENSPEMG00000007092)	Arpc2 (ENSPEMG00000013064)	Cxcr1 (ENSPEMG00000014090)	ENSPEMG00000024826 #23	ENSPEMG00000014345 #22	Cxcr2 (ENSPEMG00000029924)	Rufy4 (ENSPEMG00000022881)	Tns1 (ENSPEMG00000017420)	Tnp1 (ENSPEMG00000013633)	Igfbp5 (ENSPEMG00000024920)	Igfbp2 (ENSPEMG00000018165)	Rpl37a (ENSPEMG00000008580)	Smarcal1 (ENSPEMG00000013063)	Marchf4 (ENSPEMG00000005987)	Xrcc5 (ENSPEMG00000012102)	Tmem169 (ENSPEMG00000026340)	Pecr (ENSPEMG00000007409)	Mreg (ENSPEMG00000007185)	Fn1 (ENSPEMG00000018184)	Atic (ENSPEMG00000014807)
Northern American deer mouse	MODERN SPECIES	20	Ccr5 (ENSPEMG00000022837)	Ccr2 (ENSPEMG00000007551)	Ccr3 (ENSPEMG00000029302)	Ccr1l1 (ENSPEMG00000002387)	Ccr1 (ENSPEMG00000015252)	Xcr1 (ENSPEMG00000023362)	Fyco1 (ENSPEMG00000006762)	Cxcr6 (ENSPEMG00000017823)	Ccr9 (ENSPEMG00000022968)	Lztfl1 (ENSPEMG00000021362)	Slc6a20a (ENSPEMG00000021502)	ENSPEMG00000028081	Slc6a20b (ENSPEMG00000013603)	Sacm1l (ENSPEMG00000010697)	Limd1 (ENSPEMG00000023789)	ENSPEMG00000030597 #22	Lars2 (ENSPEMG00000021995)	Tmem158 (ENSPEMG00000023989)	Cdcp1 (ENSPEMG00000023158)	Clec3b (ENSPEMG00000021947)	Exosc7 (ENSPEMG00000022845)	Zdhhc3 (ENSPEMG00000021518)	Tgm4 (ENSPEMG00000024151)	Tmem42 (ENSPEMG00000015647)	Kif15 (ENSPEMG00000023477)	ENSPEMG00000023094	Zfp105 (ENSPEMG00000007469)	ENSPEMG00000000592	ENSPEMG00000007084	Tcaim (ENSPEMG00000020181)	Topaz1 (ENSPEMG00000010517)
Northern American deer mouse	MODERN SPECIES	21	Usp22 (ENSPEMG00000018989)	Aldh3a1 (ENSPEMG00000008575)	Aldh3a2 (ENSPEMG00000018706)	Slc47a2 (ENSPEMG00000001342)	Slc47a1 (ENSPEMG00000019128)	Rnf112 (ENSPEMG00000008855)	Mfap4 (ENSPEMG00000009280)	Mapk7 (ENSPEMG00000009482)	B9d1 (ENSPEMG00000018923)	Epn2 (ENSPEMG00000019148)	Grap (ENSPEMG00000024485)	Slc5a10 (ENSPEMG00000009615)	Fam83g (ENSPEMG00000009298)	Prpsap2 (ENSPEMG00000009417)	Ulk2 (ENSPEMG00000016139)	ENSPEMG00000026122 #22	ENSPEMG00000001049	ENSPEMG00000029226	Akap10 (ENSPEMG00000027733)	ENSPEMG00000008466	Adora2b (ENSPEMG00000030868)	Zswim7 (ENSPEMG00000008522)	Ttc19 (ENSPEMG00000007828)	ENSPEMG00000008258	ENSPEMG00000019132	Pigl (ENSPEMG00000025589)	Cenpv (ENSPEMG00000018813)	ENSPEMG00000018979	Trpv2 (ENSPEMG00000018973)	Lrrc75a (ENSPEMG00000019140)	Mmgt2 (ENSPEMG00000030147)
Prairie vole	DUPLICATION
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	7	Tmem233 (ENSMOCG00000002502)	Prkab1 (ENSMOCG00000006183)	Cit (ENSMOCG00000012761) #9	Bicdl1 (ENSMOCG00000019402) #10	Rab35 (ENSMOCG00000019999) #11	Gcn1 (ENSMOCG00000000746) #12	ENSMOCG00000012309 ##13	Pxn (ENSMOCG00000014430) #14	Sirt4 (ENSMOCG00000016396) #15	Pla2g1b (ENSMOCG00000010330) #16	Msi1 (ENSMOCG00000002286) #17	ENSMOCG00000006758 #18	Triap1 (ENSMOCG00000005593) #19	Gatc (ENSMOCG00000005051) #20	Srsf9 (ENSMOCG00000021163) #21	ENSMOCG00000018482 #22	Coq5 (ENSMOCG00000022159) #24	Rnf10 (ENSMOCG00000018331) #25	Pop5 (ENSMOCG00000013322) #26	ENSMOCG00000004672 #27	Mlec (ENSMOCG00000001542) #28	Unc119b (ENSMOCG00000017585) #29	Acads (ENSMOCG00000012085) #30	Sppl3 (ENSMOCG00000005567) #31	Hnf1a (ENSMOCG00000003129) #33	2210016L21Rik (ENSMOCG00000020970) #34	Oasl1 (ENSMOCG00000013643) #35	Oasl2 (ENSMOCG00000019431) ##35	4930519G04Rik (ENSMOCG00000023019)	ENSMOCG00000002202	Ankrd13a (ENSMOCG00000021097)
Prairie vole	MODERN SPECIES	353	Cdc42ep3 (ENSMOCG00000021989)	Qpct (ENSMOCG00000001148)	Prkd3 (ENSMOCG00000017105)	Ndufaf7 (ENSMOCG00000009739)	Cebpz (ENSMOCG00000018640)	Cebpzos (ENSMOCG00000020860)	Sult6b1 (ENSMOCG00000005446)	ENSMOCG00000021613	Gpatch11 (ENSMOCG00000012750)	Heatr5b (ENSMOCG00000018243)	Strn (ENSMOCG00000009885)	Vit (ENSMOCG00000017868)	ENSMOCG00000012236	Crim1 (ENSMOCG00000019306)	ENSMOCG00000009452	ENSMOCG00000016027 #22	ENSMOCG00000002649	Lsm5 (ENSMOCG00000012018)	Pde1c (ENSMOCG00000005504)	Ppp1r17 (ENSMOCG00000007423)	Itprid1 (ENSMOCG00000019267)	Neurod6 (ENSMOCG00000012184)	Adcyap1r1 (ENSMOCG00000006639)	Ghrhr (ENSMOCG00000001328)	Aqp1 (ENSMOCG00000016051)	Mindy4 (ENSMOCG00000006426)	Inmt (ENSMOCG00000015765)	Crhr2 (ENSMOCG00000019712)	Gars (ENSMOCG00000017680)	Ggct (ENSMOCG00000001055)	Nod1 (ENSMOCG00000022664)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	262													ENSMOCG00000004205	ENSMOCG00000007060	Or4c3 (ENSMOCG00000001763)	ENSMOCG00000002546 #22	ENSMOCG00000002835
Prairie vole	MODERN SPECIES	4							Armh4 (ENSMOCG00000015938)	Slc35f4 (ENSMOCG00000007286)	ccdc198 (ENSMOCG00000009305)	Naa30 (ENSMOCG00000013852)	ENSMOCG00000006129	Ap5m1 (ENSMOCG00000021173)	Exoc5 (ENSMOCG00000019782)	ENSMOCG00000007409	ENSMOCG00000011281	ENSMOCG00000006238 #22	Atg14 (ENSMOCG00000000144)	Fbxo34 (ENSMOCG00000006547)	Dlgap5 (ENSMOCG00000021523)	Lgals3 (ENSMOCG00000022866)	Mapk1ip1l (ENSMOCG00000000105)	Socs4 (ENSMOCG00000000093)	Wdhd1 (ENSMOCG00000013032)	Gch1 (ENSMOCG00000022270)	Samd4 (ENSMOCG00000014893)	Cgrrf1 (ENSMOCG00000015089)	Gmfb (ENSMOCG00000004831)	Cnih1 (ENSMOCG00000014115)	Cdkn3 (ENSMOCG00000014227)	ENSMOCG00000017303	Bmp4 (ENSMOCG00000021555)
Lagomorpha	ANCESTRAL SPECIES	80	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b.d ##13	ENSGT00940000166687	ENSGT00390000017839.o.b.a.b.c.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a.l #33
Pika	MODERN SPECIES	239												COX6A1 (ENSOPRG00000004213) #18	TRIAP1 (ENSOPRG00000004220) #19	GATC (ENSOPRG00000004226) #20	SRSF9 (ENSOPRG00000004234) #21	DYNLL1 (ENSOPRG00000004261) #22	COQ5 (ENSOPRG00000004269) #24	RNF10 (ENSOPRG00000004291) #25	POP5 (ENSOPRG00000004327) #26	CABP1 (ENSOPRG00000004337) #27	MLEC (ENSOPRG00000004378) #28	UNC119B (ENSOPRG00000004394) #29	ACADS (ENSOPRG00000004401) #30	SPPL3 (ENSOPRG00000004425) #31
Rabbit	DUPLICATION
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	13	CIT (ENSOCUG00000016324) #9	BICDL1 (ENSOCUG00000025898) #10	ENSOCUG00000014600 #11	GCN1 (ENSOCUG00000005717) #12	ENSOCUG00000005749 ##13	PXN (ENSOCUG00000005754) #14	SIRT4 (ENSOCUG00000011320) #15	PLA2G1B (ENSOCUG00000001105) #16	MSI1 (ENSOCUG00000027716) #17	ENSOCUG00000037826	ENSOCUG00000009873 #18	TRIAP1 (ENSOCUG00000009871) #19	ENSOCUG00000009867 #20	SRSF9 (ENSOCUG00000024603) #21	ENSOCUG00000039563 #23	ENSOCUG00000017806 #22	COQ5 (ENSOCUG00000014871) #24	ENSOCUG00000035991	RNF10 (ENSOCUG00000014880) #25	POP5 (ENSOCUG00000006537) #26	ENSOCUG00000008358 #27	MLEC (ENSOCUG00000008367) #28	ACADS (ENSOCUG00000008379) #30	ENSOCUG00000034268 #22	ENSOCUG00000031717 #33	SPPL3 (ENSOCUG00000007496) #31	MED13L (ENSOCUG00000017525)	ENSOCUG00000014595	ENSOCUG00000033172	TBX5 (ENSOCUG00000012715)	RBM19 (ENSOCUG00000009398)
Rabbit	MODERN SPECIES	1401	ENSOCUG00000023630	PPP4R3C (ENSOCUG00000006805)	ENSOCUG00000035781	ENSOCUG00000026167	ENSOCUG00000023111	ENSOCUG00000029666	ENSOCUG00000027612	ENSOCUG00000025944	ENSOCUG00000036870	ENSOCUG00000006236	ARX (ENSOCUG00000022180)	POLA1 (ENSOCUG00000015209)	ENSOCUG00000021995	PCYT1B (ENSOCUG00000007424)	PDK3 (ENSOCUG00000007418)	ENSOCUG00000033283 #22	ENSOCUG00000024600	ENSOCUG00000021737	ENSOCUG00000003815	ENSOCUG00000006592	KLHL15 (ENSOCUG00000006668)	CXorf58 (ENSOCUG00000009648)	ENSOCUG00000014006	ENSOCUG00000009645	ACOT9 (ENSOCUG00000004779)	PRDX4 (ENSOCUG00000004786)	ENSOCUG00000037984	ENSOCUG00000022336	ENSOCUG00000032925	PTCHD1 (ENSOCUG00000014375)	ENSOCUG00000004437
Rabbit	MODERN SPECIES	13	MSI1 (ENSOCUG00000027716) #17	ENSOCUG00000037826	ENSOCUG00000009873 #18	TRIAP1 (ENSOCUG00000009871) #19	ENSOCUG00000009867 #20	SRSF9 (ENSOCUG00000024603) #21	ENSOCUG00000039563 #23	ENSOCUG00000017806 #22	COQ5 (ENSOCUG00000014871) #24	ENSOCUG00000035991	RNF10 (ENSOCUG00000014880) #25	POP5 (ENSOCUG00000006537) #26	ENSOCUG00000008358 #27	MLEC (ENSOCUG00000008367) #28	ACADS (ENSOCUG00000008379) #30	ENSOCUG00000034268 #22	ENSOCUG00000031717 #33	SPPL3 (ENSOCUG00000007496) #31	MED13L (ENSOCUG00000017525)	ENSOCUG00000014595	ENSOCUG00000033172	TBX5 (ENSOCUG00000012715)	RBM19 (ENSOCUG00000009398)	LHX5 (ENSOCUG00000009321)	SDSL (ENSOCUG00000012353)	SDS (ENSOCUG00000022168)	PLBD2 (ENSOCUG00000007851)	SLC8B1 (ENSOCUG00000003827)	TPCN1 (ENSOCUG00000023629)	IQCD (ENSOCUG00000016029)	RITA1 (ENSOCUG00000022772)
Tree shrew	DUPLICATION
Tree shrew	DUPLICATION
Tree shrew	DUPLICATION
Tree shrew	MODERN SPECIES	5413													CCDC97 (ENSTBEG00000010817)	HNRNPUL1 (ENSTBEG00000009907)	AXL (ENSTBEG00000009676)	ENSTBEG00000017734 #22
Tree shrew	MODERN SPECIES	9028																ENSTBEG00000006326 #22
Tree shrew	MODERN SPECIES	1594						ENSTBEG00000001052 #10	RAB35 (ENSTBEG00000002015) #11	ENSTBEG00000002947 #12	ENSTBEG00000005498 ##13	SIRT4 (ENSTBEG00000006165) #15	PLA2G1B (ENSTBEG00000006463) #16	MSI1 (ENSTBEG00000007182) #17	COX6A1 (ENSTBEG00000008018) #18	SRSF9 (ENSTBEG00000008499) #21	ENSTBEG00000008820 #23	ENSTBEG00000009154 #22	COQ5 (ENSTBEG00000009255) #24	RNF10 (ENSTBEG00000009469) #25	POP5 (ENSTBEG00000010131) #26
Tree shrew	MODERN SPECIES	4488															CLPB (ENSTBEG00000012325)	ENSTBEG00000012297 #22	INPPL1 (ENSTBEG00000012162)	FOLR2 (ENSTBEG00000012107)	ENSTBEG00000012095	LAMTOR1 (ENSTBEG00000011982)	LRRC51 (ENSTBEG00000011970)
Laurasiatheria	ANCESTRAL SPECIES	19	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Laurasiatheria_b	DUPLICATION
Laurasiatheria_b	DUPLICATION
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b.eb #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Carnivora	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.h ##18	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Caniformia	ANCESTRAL SPECIES	9	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.g.a ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303
Canidae	ANCESTRAL SPECIES	23	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.g.a.a.a ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303.k
Canis_lupus	ANCESTRAL SPECIES	25	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.g.a.a.a ##18	ENSGT00940000163530.g	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.eb.g.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00950000183642	ENSGT00950000183200.A.a.b.b.d
Dog	MODERN SPECIES	18	PRKAB1 (ENSCAFG00845028956)	CIT (ENSCAFG00845029114) #9	BICDL1 (ENSCAFG00845029314) #10	RAB35 (ENSCAFG00845029385) #11	GCN1 (ENSCAFG00845029461) #12	RPLP0 (ENSCAFG00845029523) ##13	PXN (ENSCAFG00845029597) #14	SIRT4 (ENSCAFG00845029659) #15	PLA2G1B (ENSCAFG00845029696) #16	MSI1 (ENSCAFG00845029732) #17	ENSCAFG00845029750 ##18	TRIAP1 (ENSCAFG00845029768)	GATC (ENSCAFG00845029782) #20	SRSF9 (ENSCAFG00845029795) #21	ENSCAFG00845029808 #23	DYNLL1 (ENSCAFG00845029827) #22	COQ5 (ENSCAFG00845029853) #24	ENSCAFG00845029886	RNF10 (ENSCAFG00845029907) #25	POP5 (ENSCAFG00845029940) #26	CABP1 (ENSCAFG00845029974) #27	MLEC (ENSCAFG00845030058) #28	UNC119B (ENSCAFG00845030070) #29	ACADS (ENSCAFG00845030081) #30	SPPL3 (ENSCAFG00845030094) #31	ENSCAFG00845030102 ##13	HNF1A (ENSCAFG00845030116) #33	C12orf43 (ENSCAFG00845030142) #34	OASL (ENSCAFG00845030170) #35	OASL (ENSCAFG00845030186) ##35	ENSCAFG00845030204
Dingo	MODERN SPECIES	108	PRKAB1 (ENSCAFG00020018695)	CIT (ENSCAFG00020018713) #9	BICDL1 (ENSCAFG00020018905) #10	RAB35 (ENSCAFG00020018913) #11	GCN1 (ENSCAFG00020019067) #12	ENSCAFG00020020549 ##13	PXN (ENSCAFG00020020553) #14	ENSCAFG00020020565	SIRT4 (ENSCAFG00020020573) #15	PLA2G1B (ENSCAFG00020020575) #16	MSI1 (ENSCAFG00020020585) #17	ENSCAFG00020020591 ##18	ENSCAFG00020020601	GATC (ENSCAFG00020020606) #20	SRSF9 (ENSCAFG00020020612) #21	DYNLL1 (ENSCAFG00020020616) #22	ENSCAFG00020020622 #23	COQ5 (ENSCAFG00020020629) #24	ENSCAFG00020020636	RNF10 (ENSCAFG00020020643) #25	POP5 (ENSCAFG00020020663) #26	ENSCAFG00020020668	ENSCAFG00020020674 #27	MLEC (ENSCAFG00020020680) #28	UNC119B (ENSCAFG00020020684) #29	ACADS (ENSCAFG00020020690) #30	SPPL3 (ENSCAFG00020020696) #31	ENSCAFG00020020700 ##13	HNF1A (ENSCAFG00020020711) #33	C12orf43 (ENSCAFG00020020834) #34	OASL (ENSCAFG00020020845) #35
Red fox	MODERN SPECIES	118	PRKAB1 (ENSVVUG00000013375)	CIT (ENSVVUG00000013447) #9	BICDL1 (ENSVVUG00000015098) #10	RAB35 (ENSVVUG00000015107) #11	GCN1 (ENSVVUG00000015267) #12	RPLP0 (ENSVVUG00000020750) ##13	PXN (ENSVVUG00000020832) #14	ENSVVUG00000020989	SIRT4 (ENSVVUG00000020991) #15	PLA2G1B (ENSVVUG00000020992) #16	MSI1 (ENSVVUG00000020993) #17	TRIAP1 (ENSVVUG00000021053)	GATC (ENSVVUG00000021055) #20	SRSF9 (ENSVVUG00000021065) #21	ENSVVUG00000021069 #23	DYNLL1 (ENSVVUG00000021070) #22	COQ5 (ENSVVUG00000021074) #24	ENSVVUG00000021075	RNF10 (ENSVVUG00000021077) #25	POP5 (ENSVVUG00000021154) #26	ENSVVUG00000021158 #27	MLEC (ENSVVUG00000021167) #28	UNC119B (ENSVVUG00000021173) #29	ACADS (ENSVVUG00000021178) #30	SPPL3 (ENSVVUG00000021208) #31	ENSVVUG00000021284 ##13	HNF1A (ENSVVUG00000021303) #33	C12orf43 (ENSVVUG00000021604) #34	OASL (ENSVVUG00000021628) #35	ENSVVUG00000021631 ##35	ENSVVUG00000021635
Caniformia_b	ANCESTRAL SPECIES	29	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
Ursidae	ANCESTRAL SPECIES	34	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00940000154612.m.a.h ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.eb.g.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.f #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
Ursus	ANCESTRAL SPECIES	100	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.h ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.f #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
American black bear	MODERN SPECIES	1672											MSI1 (ENSUAMG00000015514) #17	ENSUAMG00000015518 ##18	ENSUAMG00000015521	GATC (ENSUAMG00000015523) #20	SRSF9 (ENSUAMG00000015527) #21	ENSUAMG00000015533 #22	ENSUAMG00000015535 #23	COQ5 (ENSUAMG00000015538) #24	RNF10 (ENSUAMG00000015540) #25	POP5 (ENSUAMG00000015541) #26
Polar bear	MODERN SPECIES	306	CCDC60 (ENSUMAG00000009473)	ENSUMAG00000009467	PRKAB1 (ENSUMAG00000009465)	CIT (ENSUMAG00000009329) #9	BICDL1 (ENSUMAG00000009286) #10	RAB35 (ENSUMAG00000009279) #11	GCN1 (ENSUMAG00000006755) #12	ENSUMAG00000006491 ##13	PXN (ENSUMAG00000006250) #14	SIRT4 (ENSUMAG00000006207) #15	PLA2G1B (ENSUMAG00000006199) #16	MSI1 (ENSUMAG00000006176) #17	ENSUMAG00000006170	ENSUMAG00000006163 #18	SRSF9 (ENSUMAG00000006151) #21	ENSUMAG00000006146 #22	COQ5 (ENSUMAG00000006144) #24	RNF10 (ENSUMAG00000006138) #25	POP5 (ENSUMAG00000006137) #26	ENSUMAG00000006132 #27	MLEC (ENSUMAG00000006120) #28	UNC119B (ENSUMAG00000006089) #29	ACADS (ENSUMAG00000006082) #30	SPPL3 (ENSUMAG00000006077) #31	HNF1A (ENSUMAG00000005905) #33	C12orf43 (ENSUMAG00000005887) #34	OASL (ENSUMAG00000005863) #35	ENSUMAG00000005858 ##35	WSCD2 (ENSUMAG00000005853)	CMKLR1 (ENSUMAG00000005852)	FICD (ENSUMAG00000005849)
Giant Panda	MODERN SPECIES	3	TMEM233 (ENSAMEG00000016054)	PRKAB1 (ENSAMEG00000016023)	CIT (ENSAMEG00000015972) #9	BICDL1 (ENSAMEG00000005057) #10	RAB35 (ENSAMEG00000005061) #11	GCN1 (ENSAMEG00000005077) #12	RPLP0 (ENSAMEG00000005144) ##13	PXN (ENSAMEG00000005166) #14	SIRT4 (ENSAMEG00000005190) #15	PLA2G1B (ENSAMEG00000005195) #16	MSI1 (ENSAMEG00000013302) #17	ENSAMEG00000030123 #18	TRIAP1 (ENSAMEG00000013300) #19	SRSF9 (ENSAMEG00000013294) #21	ENSAMEG00000028303 #23	ENSAMEG00000013289 #22	COQ5 (ENSAMEG00000013273) #24	RNF10 (ENSAMEG00000008514) #25	POP5 (ENSAMEG00000008503) #26	ENSAMEG00000008490 #27	MLEC (ENSAMEG00000008482) #28	UNC119B (ENSAMEG00000008473) #29	ACADS (ENSAMEG00000008437) #30	SPPL3 (ENSAMEG00000008412) #31	HNF1A (ENSAMEG00000008387) #33	C12orf43 (ENSAMEG00000008372) #34	ENSAMEG00000008347 #35	ENSAMEG00000027251 ##35	ENSAMEG00000016128	ENSAMEG00000018779	FICD (ENSAMEG00000026987)
Mustelinae	ANCESTRAL SPECIES	34	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B.h #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
American mink	MODERN SPECIES	69	TMEM233 (ENSNVIG00000013572)	PRKAB1 (ENSNVIG00000013546)	CIT (ENSNVIG00000012752) #9	BICDL1 (ENSNVIG00000012716) #10	RAB35 (ENSNVIG00000012703) #11	ENSNVIG00000009703 #12	ENSNVIG00000009596 ##13	ENSNVIG00000009577 #14	SIRT4 (ENSNVIG00000009562) #15	PLA2G1B (ENSNVIG00000009520) #16	MSI1 (ENSNVIG00000009511) #17	TRIAP1 (ENSNVIG00000009500) #19	GATC (ENSNVIG00000009447) #20	SRSF9 (ENSNVIG00000009434) #21	ENSNVIG00000009423 #23	DYNLL1 (ENSNVIG00000009399) #22	COQ5 (ENSNVIG00000009357) #24	RNF10 (ENSNVIG00000009269) #25	POP5 (ENSNVIG00000009240) #26	ENSNVIG00000009215 #27	MLEC (ENSNVIG00000009196) #28	UNC119B (ENSNVIG00000009190) #29	ACADS (ENSNVIG00000009180) #30	SPPL3 (ENSNVIG00000009151) #31	HNF1A (ENSNVIG00000009100) #33	C12orf43 (ENSNVIG00000009061) #34	ENSNVIG00000009050 #35	ENSNVIG00000008987 ##35
Ferret	MODERN SPECIES	200	HSPB8 (ENSMPUG00000002938)	CCDC60 (ENSMPUG00000002946)	PRKAB1 (ENSMPUG00000002954)	CIT (ENSMPUG00000002961) #9	BICDL1 (ENSMPUG00000002991) #10	RAB35 (ENSMPUG00000002998) #11	GCN1 (ENSMPUG00000003028) #12	ENSMPUG00000003055 ##13	PXN (ENSMPUG00000003096) #14	SIRT4 (ENSMPUG00000003159) #15	PLA2G1B (ENSMPUG00000003162) #16	MSI1 (ENSMPUG00000003168) #17	TRIAP1 (ENSMPUG00000003179) #19	GATC (ENSMPUG00000003183) #20	SRSF9 (ENSMPUG00000003193) #21	ENSMPUG00000003209 #22	COQ5 (ENSMPUG00000003212) #24	RNF10 (ENSMPUG00000003216) #25	POP5 (ENSMPUG00000003221) #26	ENSMPUG00000003224 #27	MLEC (ENSMPUG00000003247) #28	UNC119B (ENSMPUG00000003263) #29	ACADS (ENSMPUG00000003270) #30	SPPL3 (ENSMPUG00000003280) #31	HNF1A (ENSMPUG00000003290) #33	C12orf43 (ENSMPUG00000003298) #34	OASL (ENSMPUG00000003306) #35	ENSMPUG00000003310 ##35
Felidae	ANCESTRAL SPECIES	20	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.h ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00390000006350.m.b.k	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
Panthera	ANCESTRAL SPECIES	28	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.h ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00390000006350.m.b.k	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
Panthera_a	ANCESTRAL SPECIES	30	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.h ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000006350.m.b.k	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
leopard	MODERN SPECIES	50	PRKAB1 (ENSPPRG00000003794)	CIT (ENSPPRG00000011945) #9	BICDL1 (ENSPPRG00000012338) #10	RAB35 (ENSPPRG00000013225) #11	GCN1 (ENSPPRG00000020064) #12	ENSPPRG00000024600 ##13	PXN (ENSPPRG00000022825) #14	SIRT4 (ENSPPRG00000022642) #15	PLA2G1B (ENSPPRG00000000284) #16	MSI1 (ENSPPRG00000000370) #17	ENSPPRG00000000514 ##18	ENSPPRG00000000609	GATC (ENSPPRG00000000929) #20	SRSF9 (ENSPPRG00000001309) #21	ENSPPRG00000001736 #23	DYNLL1 (ENSPPRG00000002533) #22	COQ5 (ENSPPRG00000003370) #24	ENSPPRG00000003999	RNF10 (ENSPPRG00000005924) #25	POP5 (ENSPPRG00000006474) #26	ENSPPRG00000008982 #27	MLEC (ENSPPRG00000009739) #28	UNC119B (ENSPPRG00000009930) #29	ACADS (ENSPPRG00000010769) #30	SPPL3 (ENSPPRG00000011547) #31	HNF1A (ENSPPRG00000015495) #33	C12orf43 (ENSPPRG00000021054) #34	ENSPPRG00000021589	OASL (ENSPPRG00000023710) #35	ENSPPRG00000023601 ##35	WSCD2 (ENSPPRG00000022733)
lion	MODERN SPECIES	12	PRKAB1 (ENSPLOG00000011019)	CIT (ENSPLOG00000010264) #9	ENSPLOG00000010104 #10	RAB35 (ENSPLOG00000010041) #11	GCN1 (ENSPLOG00000009692) #12	ENSPLOG00000009575 ##13	PXN (ENSPLOG00000009332) #14	SIRT4 (ENSPLOG00000009217) #15	PLA2G1B (ENSPLOG00000009155) #16	MSI1 (ENSPLOG00000009046) #17	COX6A1 (ENSPLOG00000009001) ##18	TRIAP1 (ENSPLOG00000008972) #19	GATC (ENSPLOG00000008940) #20	SRSF9 (ENSPLOG00000008910) #21	ENSPLOG00000008878 #23	DYNLL1 (ENSPLOG00000008845) #22	COQ5 (ENSPLOG00000008815) #24	RNF10 (ENSPLOG00000008762) #25	POP5 (ENSPLOG00000008608) #26	CABP1 (ENSPLOG00000008411) #27	MLEC (ENSPLOG00000008332) #28	UNC119B (ENSPLOG00000008303) #29	ACADS (ENSPLOG00000008264) #30	ENSPLOG00000008214	SPPL3 (ENSPLOG00000008177) #31	HNF1A (ENSPLOG00000008037) #33	C12orf43 (ENSPLOG00000007911) #34	ENSPLOG00000007881	OASL (ENSPLOG00000007736) #35	ENSPLOG00000007645 ##35	WSCD2 (ENSPLOG00000007599)
Tiger	MODERN SPECIES	427	TMEM233 (ENSPTIG00000013589)	ENSPTIG00000013641	CIT (ENSPTIG00000014138) #9	BICDL1 (ENSPTIG00000017719) #10	RAB35 (ENSPTIG00000018147) #11	GCN1 (ENSPTIG00000018996) #12	ENSPTIG00000001811 ##13	PXN (ENSPTIG00000006433) #14	SIRT4 (ENSPTIG00000008563) #15	PLA2G1B (ENSPTIG00000008625) #16	MSI1 (ENSPTIG00000008913) #17	COX6A1 (ENSPTIG00000009294) ##18	ENSPTIG00000009729	GATC (ENSPTIG00000009889) #20	SRSF9 (ENSPTIG00000010327) #21	DYNLL1 (ENSPTIG00000010457) #22	ENSPTIG00000010700 #23	COQ5 (ENSPTIG00000010765) #24	RNF10 (ENSPTIG00000011143) #25	POP5 (ENSPTIG00000012194) #26	ENSPTIG00000012721 #27	MLEC (ENSPTIG00000013142) #28	UNC119B (ENSPTIG00000014128) #29	ACADS (ENSPTIG00000014549) #30	SPPL3 (ENSPTIG00000015780) #31	ENSPTIG00000016630 #33	ENSPTIG00000016762 #33	C12orf43 (ENSPTIG00000017185) #34	OASL (ENSPTIG00000017787) #35	ENSPTIG00000019945	ENSPTIG00000020051 ##35
Cat	MODERN SPECIES	243	PRKAB1 (ENSFCAG00000000923)	CIT (ENSFCAG00000000924) #9	BICDL1 (ENSFCAG00000015453) #10	RAB35 (ENSFCAG00000032566) #11	GCN1 (ENSFCAG00000013353) #12	RPLP0 (ENSFCAG00000013354) ##13	PXN (ENSFCAG00000018405) #14	SIRT4 (ENSFCAG00000025934) #15	PLA2G1B (ENSFCAG00000038683) #16	MSI1 (ENSFCAG00000011007) #17	ENSFCAG00000042543 ##18	TRIAP1 (ENSFCAG00000032445) #19	GATC (ENSFCAG00000038718) #20	SRSF9 (ENSFCAG00000011011) #21	ENSFCAG00000011013 #23	DYNLL1 (ENSFCAG00000036800) #22	COQ5 (ENSFCAG00000011014) #24	RNF10 (ENSFCAG00000033733) #25	POP5 (ENSFCAG00000042614) #26	CABP1 (ENSFCAG00000024731) #27	MLEC (ENSFCAG00000002400) #28	UNC119B (ENSFCAG00000023496) #29	ACADS (ENSFCAG00000002402) #30	SPPL3 (ENSFCAG00000030187) #31	HNF1A (ENSFCAG00000009638) #33	CD3H12orf43 (ENSFCAG00000009640) #34	OASL (ENSFCAG00000009641) #35	ENSFCAG00000025005	ENSFCAG00000032891 ##35	WSCD2 (ENSFCAG00000010884)	CMKLR1 (ENSFCAG00000010888)
Laurasiatheria_c	ANCESTRAL SPECIES	21	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.eb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00950000183200.A.a.b.b.d	ENSGT00940000159434
Chiroptera	ANCESTRAL SPECIES	18	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Microchiroptera	ANCESTRAL SPECIES	9	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00530000065303	ENSGT00950000182928.A.b
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	17	CCDC60 (ENSRFEG00010014357)	TMEM233 (ENSRFEG00010014621)	PRKAB1 (ENSRFEG00010014678)	CIT (ENSRFEG00010014846) #9	BICDL1 (ENSRFEG00010016328) #10	RAB35 (ENSRFEG00010013543) #11	ENSRFEG00010013638 #12	ENSRFEG00010014141 ##13	PXN (ENSRFEG00010014299) #14	SIRT4 (ENSRFEG00010014687) #15	PLA2G1B (ENSRFEG00010014744) #16	MSI1 (ENSRFEG00010014857) #17	ENSRFEG00010014936 #18	ENSRFEG00010015041	SRSF9 (ENSRFEG00010015094) #21	ENSRFEG00010015155 #22	ENSRFEG00010015213 #23	COQ5 (ENSRFEG00010015289) #24	RNF10 (ENSRFEG00010015360) #25	POP5 (ENSRFEG00010015446) #26	CABP1 (ENSRFEG00010015615) #27	MLEC (ENSRFEG00010015876) #28	UNC119B (ENSRFEG00010015944) #29	ACADS (ENSRFEG00010015991) #30	SPPL3 (ENSRFEG00010016055) #31	ENSRFEG00010016087	HNF1A (ENSRFEG00010016115) #33	C12orf43 (ENSRFEG00010016283) #34	OASL (ENSRFEG00010016367) #35	ENSRFEG00010016461 ##35	C12orf76 (ENSRFEG00010016482)
Greater horseshoe bat	MODERN SPECIES	22	GPAT4 (ENSRFEG00010016245)	MBD3L1 (ENSRFEG00010016322)	ENSRFEG00010000256	GOLGA7 (ENSRFEG00010000282)	SFRP1 (ENSRFEG00010000348)	ZMAT4 (ENSRFEG00010000395)	TCIM (ENSRFEG00010000429)	IDO2 (ENSRFEG00010000467)	IDO1 (ENSRFEG00010000511)	ADAM2 (ENSRFEG00010000610)	ADAM18 (ENSRFEG00010000853)	ENSRFEG00010001002	ENSRFEG00010001024	ENSRFEG00010001138	ENSRFEG00010001208	ENSRFEG00010001357 #22	ADAM9 (ENSRFEG00010001379)	TM2D2 (ENSRFEG00010001434)	HTRA4 (ENSRFEG00010001474)	PLEKHA2 (ENSRFEG00010001508)	TACC1 (ENSRFEG00010001569)	FGFR1 (ENSRFEG00010001714)	LETM2 (ENSRFEG00010001818)	NSD3 (ENSRFEG00010001897)	PLPP5 (ENSRFEG00010001960)	DDHD2 (ENSRFEG00010002002)	BAG4 (ENSRFEG00010002051)	LSM1 (ENSRFEG00010002086)	STAR (ENSRFEG00010002121)	ASH2L (ENSRFEG00010002223)	EIF4EBP1 (ENSRFEG00010002320)
Microbat	DUPLICATION
Microbat	MODERN SPECIES	1118	TMEM233 (ENSMLUG00000028162)	PRKAB1 (ENSMLUG00000015390)	ENSMLUG00000027709	CIT (ENSMLUG00000015398) #9	BICDL1 (ENSMLUG00000015429) #10	RAB35 (ENSMLUG00000015439) #11	GCN1 (ENSMLUG00000015444) #12	ENSMLUG00000001970 ##13	ENSMLUG00000015484 #14	PLA2G1B (ENSMLUG00000009487) #16	MSI1 (ENSMLUG00000010313) #17	COX6A1 (ENSMLUG00000010330) #18	ENSMLUG00000010334	GATC (ENSMLUG00000010341) #20	SRSF9 (ENSMLUG00000010346) #21	ENSMLUG00000010358 #22	COQ5 (ENSMLUG00000014636) #24	RNF10 (ENSMLUG00000014644) #25	POP5 (ENSMLUG00000014657) #26	ENSMLUG00000015996 #27	MLEC (ENSMLUG00000005515) #28	UNC119B (ENSMLUG00000005519) #29	ACADS (ENSMLUG00000010067) #30	SPPL3 (ENSMLUG00000012754) #31	HNF1A (ENSMLUG00000009109) #33	C12orf43 (ENSMLUG00000009122) #34	OASL (ENSMLUG00000009136) #35	C12orf76 (ENSMLUG00000026813)	ANKRD13A (ENSMLUG00000004128)	GIT2 (ENSMLUG00000004106)	TCHP (ENSMLUG00000007412)
Microbat	MODERN SPECIES	940	STAT1 (ENSMLUG00000010083)	ENSMLUG00000000057	MYO1B (ENSMLUG00000000058)	NABP1 (ENSMLUG00000012075)	CAVIN2 (ENSMLUG00000015774)	TMEFF2 (ENSMLUG00000007530)	ENSMLUG00000028828	SLC39A10 (ENSMLUG00000007527)	DNAH7 (ENSMLUG00000007538)	STK17B (ENSMLUG00000007648)	HECW2 (ENSMLUG00000007654)	CCDC150 (ENSMLUG00000001986)	GTF3C3 (ENSMLUG00000024692)	PGAP1 (ENSMLUG00000010784)	ANKRD44 (ENSMLUG00000010842)	ENSMLUG00000005254 #22	SF3B1 (ENSMLUG00000000840)	COQ10B (ENSMLUG00000000865)	ENSMLUG00000000871	HSPE1 (ENSMLUG00000000878)	ENSMLUG00000000883	MOB4 (ENSMLUG00000004971)	RFTN2 (ENSMLUG00000004991)	BOLL (ENSMLUG00000004999)	PLCL1 (ENSMLUG00000002677)	SATB2 (ENSMLUG00000001554)	ENSMLUG00000011411	C2orf69 (ENSMLUG00000026751)	TYW5 (ENSMLUG00000015955)	MAIP1 (ENSMLUG00000015960)	SPATS2L (ENSMLUG00000006594)
Megabat	MODERN SPECIES	3548								ENSPVAG00000002219	SIRT4 (ENSPVAG00000002222) #15	PLA2G1B (ENSPVAG00000002223) #16	MSI1 (ENSPVAG00000002225) #17	COX6A1 (ENSPVAG00000002226) #18	TRIAP1 (ENSPVAG00000002227) #19	GATC (ENSPVAG00000002228) #20	SRSF9 (ENSPVAG00000002229) #21	DYNLL1 (ENSPVAG00000002230) #22	COQ5 (ENSPVAG00000002231) #24	RNF10 (ENSPVAG00000002232) #25	POP5 (ENSPVAG00000002233) #26	CABP1 (ENSPVAG00000002235) #27	MLEC (ENSPVAG00000002238) #28	UNC119B (ENSPVAG00000002241) #29	ACADS (ENSPVAG00000002244) #30	SPPL3 (ENSPVAG00000002247) #31
Laurasiatheria_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00900000141143	ENSGT00940000161406	ENSGT00940000161685.A.a	ENSGT00940000156208	ENSGT00940000157734	ENSGT00390000008225	ENSGT00940000154314	ENSGT00940000154352.A	ENSGT00950000182859.A.a.a.b	ENSGT00950000182864.a.b.a	ENSGT00390000013415.a.b.q.a.b	ENSGT01030000234522.C.b.e.a.a.b	ENSGT00390000013415.a.b.q.b	ENSGT01030000234527.A.a.b.a.a	ENSGT00940000159105	ENSGT00390000000378.d.b.db.b #22	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C
Ursidae	ANCESTRAL SPECIES	17																ENSGT00390000000378.d.b.db.b #22	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00530000063668.B.d	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C
Ursus	ANCESTRAL SPECIES	115																ENSGT00390000000378.d.b.db.b #22	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00530000063668.B.d	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C
Polar bear	MODERN SPECIES	269																ENSUMAG00000000826 #22	STMN4 (ENSUMAG00000000750)	TRIM35 (ENSUMAG00000000742)	PTK2B (ENSUMAG00000000711)	CHRNA2 (ENSUMAG00000000675)	EPHX2 (ENSUMAG00000000481)	ENSUMAG00000000345	CLU (ENSUMAG00000000329)	SCARA3 (ENSUMAG00000000172)	CCDC25 (ENSUMAG00000000103)	ESCO2 (ENSUMAG00000022519)	PBK (ENSUMAG00000022515)	SCARA5 (ENSUMAG00000022508)	NUGGC (ENSUMAG00000022498)	ELP3 (ENSUMAG00000022494)	ZNF395 (ENSUMAG00000022490)
American black bear	MODERN SPECIES	5981																ENSUAMG00000009931 #22
Giant Panda	MODERN SPECIES	15	REEP4 (ENSAMEG00000003360)	HR (ENSAMEG00000003382)	NUDT18 (ENSAMEG00000003416)	FHIP2B (ENSAMEG00000003424)	DMTN (ENSAMEG00000003459)	FGF17 (ENSAMEG00000003531)	NPM2 (ENSAMEG00000003542)	XPO7 (ENSAMEG00000003555)	DOK2 (ENSAMEG00000003671)	GFRA2 (ENSAMEG00000003691)	LZTS1 (ENSAMEG00000012664)	ATP6V1B2 (ENSAMEG00000012668)	SLC18A1 (ENSAMEG00000012721)	ENSAMEG00000000943	ENSAMEG00000005638	ENSAMEG00000031090 #22	ENSAMEG00000026433	ENSAMEG00000000209	ENSAMEG00000000207	PTK2B (ENSAMEG00000000174)	CHRNA2 (ENSAMEG00000000168)	EPHX2 (ENSAMEG00000000158)	ENSAMEG00000000147	CLU (ENSAMEG00000000141)	SCARA3 (ENSAMEG00000000140)	CCDC25 (ENSAMEG00000000139)	ESCO2 (ENSAMEG00000000137)	PBK (ENSAMEG00000000135)	SCARA5 (ENSAMEG00000000133)	NUGGC (ENSAMEG00000000131)	ELP3 (ENSAMEG00000000124)
Mustelinae	ANCESTRAL SPECIES	82	ENSGT00390000009908	ENSGT00940000154391.a.a	ENSGT00940000160512	ENSGT00390000015089	ENSGT00390000013722	ENSGT00940000158660	ENSGT00960000188301	ENSGT00940000162501	ENSGT00940000156733	ENSGT00940000156801	ENSGT00940000158403	ENSGT00390000013415.a.b.q.b	ENSGT01030000234522.C.b.e.a.a.b	ENSGT01030000234527.A.a.b.a.a	ENSGT00940000159105	ENSGT00390000000378.d.b.db.b #22	ENSGT01030000234597.a.b.a	ENSGT00940000160868	ENSGT00940000157269.a.a	ENSGT00940000158299	ENSGT00940000158614	ENSGT00510000049722	ENSGT00530000063668.B	ENSGT00940000158238	ENSGT00390000004380	ENSGT00940000158598	ENSGT00720000108839	ENSGT00950000183074.B.a.a	ENSGT00390000007091	ENSGT00390000013141	ENSGT00950000183149.C
Ferret	MODERN SPECIES	369									GAB1 (ENSMPUG00000000823)	USP38 (ENSMPUG00000000827)	ENSMPUG00000000829	PNMA2 (ENSMPUG00000018482)	ENSMPUG00000018484	DPYSL2 (ENSMPUG00000000862)	ADRA1A (ENSMPUG00000000865)	ENSMPUG00000000868 #22	STMN4 (ENSMPUG00000000871)	ENSMPUG00000000872	TRIM35 (ENSMPUG00000000873)	PTK2B (ENSMPUG00000000875)	CHRNA2 (ENSMPUG00000000876)	EPHX2 (ENSMPUG00000000882)	ENSMPUG00000000883	CLU (ENSMPUG00000000903)	SCARA3 (ENSMPUG00000000906)	CCDC25 (ENSMPUG00000000908)	ESCO2 (ENSMPUG00000000909)	PBK (ENSMPUG00000000915)	SCARA5 (ENSMPUG00000000953)	NUGGC (ENSMPUG00000000959)	ELP3 (ENSMPUG00000000966)
Laurasiatheria_c	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Chiroptera	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Microchiroptera	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.db.b #22
Microbat	MODERN SPECIES	1077	FILIP1L (ENSMLUG00000001126)	COL8A1 (ENSMLUG00000001120)	ENSMLUG00000028203	DCBLD2 (ENSMLUG00000004889)	ST3GAL6 (ENSMLUG00000026201)	CPOX (ENSMLUG00000008326)	GPR15 (ENSMLUG00000009711)	CLDND1 (ENSMLUG00000013947)	OR5K4 (ENSMLUG00000024918)	ENSMLUG00000028481	ENSMLUG00000030742	CEP97 (ENSMLUG00000011957)	NXPE3 (ENSMLUG00000017459)	NFKBIZ (ENSMLUG00000017089)	ZPLD1 (ENSMLUG00000002286)	ENSMLUG00000010377 #22
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b.eb #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00950000186285	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Laurasiatheria_c	ANCESTRAL SPECIES	21	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.eb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00950000183200.A.a.b.b.d	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
Equus	ANCESTRAL SPECIES	38	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.eb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000163029.a.b
Horse	DUPLICATION
Horse	MODERN SPECIES	14	OVOL2 (ENSECAG00000007899)	SNX5 (ENSECAG00000017202)	MGME1 (ENSECAG00000012675)	RRBP1 (ENSECAG00000014760)	DSTN (ENSECAG00000020103)	BFSP1 (ENSECAG00000021094)	PCSK2 (ENSECAG00000001142)	OTOR (ENSECAG00000017427)	SNRPB2 (ENSECAG00000018407)	ENSECAG00000048807	KIF16B (ENSECAG00000007559)	ENSECAG00000045095	ENSECAG00000044059	MACROD2 (ENSECAG00000000170)	ENSECAG00000037718 #23	DYNLL1 (ENSECAG00000008104) #22	ENSECAG00000057471	FLRT3 (ENSECAG00000002569)	ENSECAG00000046463	SEL1L2 (ENSECAG00000005703)	NDUFAF5 (ENSECAG00000011021)	ESF1 (ENSECAG00000019188)	TASP1 (ENSECAG00000004119)	ISM1 (ENSECAG00000010587)	SPTLC3 (ENSECAG00000011822)	BTBD3 (ENSECAG00000000722)	JAG1 (ENSECAG00000012993)	SLX4IP (ENSECAG00000018577)	ENSECAG00000058311	MKKS (ENSECAG00000019528)	SNAP25 (ENSECAG00000023077)
Horse	MODERN SPECIES	6	MFSD9 (ENSECAG00000019151)	TMEM182 (ENSECAG00000028489)	POU3F3 (ENSECAG00000015143)	MRPS9 (ENSECAG00000011157)	GPR45 (ENSECAG00000006780)	TGFBRAP1 (ENSECAG00000007311)	C15H2orf49 (ENSECAG00000007267)	FHL2 (ENSECAG00000022203)	ENSECAG00000045642	NCK2 (ENSECAG00000019317)	ECRG4 (ENSECAG00000018633)	UXS1 (ENSECAG00000015049)	ENSECAG00000051693	ST6GAL2 (ENSECAG00000011729)	SLC5A7 (ENSECAG00000005937)	ENSECAG00000034082 #22	SULT1C3 (ENSECAG00000020703)	SULT1C2 (ENSECAG00000017089)	ENSECAG00000047213	SULT1C4 (ENSECAG00000008834)	ENSECAG00000050861	GCC2 (ENSECAG00000003237)	ENSECAG00000044950	LIMS1 (ENSECAG00000017490)	RANBP2 (ENSECAG00000008458)	CCDC138 (ENSECAG00000021839)	EDAR (ENSECAG00000020232)	ENSECAG00000043899	SH3RF3 (ENSECAG00000019446)	SOWAHC (ENSECAG00000006753)	SEPTIN10 (ENSECAG00000014530)
Horse	MODERN SPECIES	29	ENSECAG00000046698	PRKAB1 (ENSECAG00000011947)	CIT (ENSECAG00000010078) #9	BICDL1 (ENSECAG00000004286) #10	RAB35 (ENSECAG00000002380) #11	GCN1 (ENSECAG00000016996) #12	RPLP0 (ENSECAG00000015816) #13	PXN (ENSECAG00000014975) #14	SIRT4 (ENSECAG00000013537) #15	PLA2G1B (ENSECAG00000009152) #16	COX6A1 (ENSECAG00000012512) #18	MSI1 (ENSECAG00000017526) #17	GATC (ENSECAG00000011118) #20	SRSF9 (ENSECAG00000009116) #21	ENSECAG00000056251	ENSECAG00000046364 #22	COQ5 (ENSECAG00000006182) #24	RNF10 (ENSECAG00000012725) #25	POP5 (ENSECAG00000010012) #26	CABP1 (ENSECAG00000001290) #27	MLEC (ENSECAG00000022275) #28	UNC119B (ENSECAG00000022266) #29	ACADS (ENSECAG00000012575) #30	SPPL3 (ENSECAG00000007377) #31	HNF1A (ENSECAG00000019954) #33	C8H12orf43 (ENSECAG00000014885) #34	OASL (ENSECAG00000014645) #35	ENSECAG00000012132 ##35	ENSECAG00000054492	ENSECAG00000036762	ENSECAG00000038163
Donkey	DUPLICATION
Donkey	MODERN SPECIES	6	OVOL2 (ENSEASG00005028180)	MGME1 (ENSEASG00005001985)	SNX5 (ENSEASG00005001975)	BANF2 (ENSEASG00005034425)	RRBP1 (ENSEASG00005001933)	DSTN (ENSEASG00005001923)	BFSP1 (ENSEASG00005001908)	PCSK2 (ENSEASG00005001899)	OTOR (ENSEASG00005001887)	SNRPB2 (ENSEASG00005001883)	ENSEASG00005023580	ENSEASG00005001852	ENSEASG00005001842	MACROD2 (ENSEASG00005037061)	ENSEASG00005001824 #23	ENSEASG00005001828 #22	FLRT3 (ENSEASG00005001819)	SEL1L2 (ENSEASG00005001792)	NDUFAF5 (ENSEASG00005001785)	ESF1 (ENSEASG00005001777)	TASP1 (ENSEASG00005001757)	ISM1 (ENSEASG00005001748)	SPTLC3 (ENSEASG00005001742)	BTBD3 (ENSEASG00005025576)	JAG1 (ENSEASG00005001715)	SLX4IP (ENSEASG00005001698)	ENSEASG00005031559	ENSEASG00005023679	MKKS (ENSEASG00005001688)	SNAP25 (ENSEASG00005001681)	ANKEF1 (ENSEASG00005001675)
Donkey	MODERN SPECIES	26	SLC9A4 (ENSEASG00005022063)	SLC9A2 (ENSEASG00005022066)	TMEM182 (ENSEASG00005022068)	MFSD9 (ENSEASG00005038665)	ENSEASG00005035021	MRPS9 (ENSEASG00005017804)	ENSEASG00005024307	TGFBRAP1 (ENSEASG00005017799)	C2orf49 (ENSEASG00005017798)	FHL2 (ENSEASG00005017793)	NCK2 (ENSEASG00005017787)	ECRG4 (ENSEASG00005017784)	UXS1 (ENSEASG00005017781)	ST6GAL2 (ENSEASG00005028846)	SLC5A7 (ENSEASG00005012425)	ENSEASG00005012429 #22	SULT1C3 (ENSEASG00005012431)	SULT1C2 (ENSEASG00005012434)	ENSEASG00005012482	SULT1C4 (ENSEASG00005012865)	GCC2 (ENSEASG00005012869)	ENSEASG00005012874	RANBP2 (ENSEASG00005012918)	ENSEASG00005034891	CCDC138 (ENSEASG00005013014)	EDAR (ENSEASG00005013021)	SH3RF3 (ENSEASG00005000105)	SEPTIN10 (ENSEASG00005000138)	ENSEASG00005033103
Donkey	MODERN SPECIES	28	PRKAB1 (ENSEASG00005008740)	CIT (ENSEASG00005007703) #9	BICDL1 (ENSEASG00005007623) #10	RAB35 (ENSEASG00005031195) #11	GCN1 (ENSEASG00005005480) #12	RPLP0 (ENSEASG00005005174) #13	PXN (ENSEASG00005004771) #14	SIRT4 (ENSEASG00005004744) #15	ENSEASG00005033886 #16	MSI1 (ENSEASG00005004736) #17	ENSEASG00005038589 #18	ENSEASG00005035552	GATC (ENSEASG00005004729) #20	SRSF9 (ENSEASG00005004727) #21	ENSEASG00005004721 #23	ENSEASG00005037824 #22	COQ5 (ENSEASG00005004720) #24	RNF10 (ENSEASG00005004717) #25	POP5 (ENSEASG00005004714) #26	ENSEASG00005004668 #27	MLEC (ENSEASG00005030416) #28	UNC119B (ENSEASG00005004652) #29	ACADS (ENSEASG00005004647) #30	SPPL3 (ENSEASG00005004643) #31	HNF1A (ENSEASG00005004491) #33	C12orf43 (ENSEASG00005038360) #34	ENSEASG00005004445 #35	ENSEASG00005004436 ##35	ENSEASG00005026039	ENSEASG00005033102	ENSEASG00005036841
Carnivora	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb #22
Caniformia	DUPLICATION
Caniformia	DUPLICATION
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.g.a #22
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.g.a.a #22
Canis_lupus	ANCESTRAL SPECIES	25	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.g.a.a.a ##18	ENSGT00940000163530.g	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.eb.g.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Dingo	MODERN SPECIES	150	SCPEP1 (ENSCAFG00020025611)	COIL (ENSCAFG00020025609)	TRIM25 (ENSCAFG00020025605)	DGKE (ENSCAFG00020025602)	C17orf67 (ENSCAFG00020025599)	NOG (ENSCAFG00020025598)	ENSCAFG00020025596	ENSCAFG00020025594	PCTP (ENSCAFG00020025592)	TMEM100 (ENSCAFG00020025591)	MMD (ENSCAFG00020025586)	HLF (ENSCAFG00020025583)	STXBP4 (ENSCAFG00020025560)	COX11 (ENSCAFG00020025550)	TOM1L1 (ENSCAFG00020025548)	ENSCAFG00020025544 #22	KIF2B (ENSCAFG00020025537)	ENSCAFG00020025530	CA10 (ENSCAFG00020025515)	ENSCAFG00020025508	UTP18 (ENSCAFG00020025506)	MBTD1 (ENSCAFG00020025501)	ENSCAFG00020025499	ENSCAFG00020025497	ENSCAFG00020025495	SPAG9 (ENSCAFG00020024319)	ENSCAFG00020024228	TOB1 (ENSCAFG00020024227)	WFIKKN2 (ENSCAFG00020024226)	ANKRD40CL (ENSCAFG00020024224)	LUC7L3 (ENSCAFG00020024223)
Dog	MODERN SPECIES	37	COIL (ENSCAFG00845018263)	TRIM25 (ENSCAFG00845018182)	DGKE (ENSCAFG00845018012)	C17orf67 (ENSCAFG00845017934)	NOG (ENSCAFG00845017903)	ENSCAFG00845017853	ANKFN1 (ENSCAFG00845017522)	PCTP (ENSCAFG00845017094)	TMEM100 (ENSCAFG00845016727)	SMIM36 (ENSCAFG00845016687)	MMD (ENSCAFG00845016643)	HLF (ENSCAFG00845016598)	STXBP4 (ENSCAFG00845016430)	COX11 (ENSCAFG00845016207)	TOM1L1 (ENSCAFG00845016013)	ENSCAFG00845015952 #22	ENSCAFG00845015932 #23	ENSCAFG00845015890	KIF2B (ENSCAFG00845015752)	CA10 (ENSCAFG00845015639)	ENSCAFG00845015581	UTP18 (ENSCAFG00845015483)	MBTD1 (ENSCAFG00845015245)	NME2 (ENSCAFG00845015173)	NME1 (ENSCAFG00845015140)	SPAG9 (ENSCAFG00845014917)	TOB1 (ENSCAFG00845014836)	WFIKKN2 (ENSCAFG00845014826)	ENSCAFG00845014801	LUC7L3 (ENSCAFG00845014680)	ANKRD40 (ENSCAFG00845014612)
Canidae	ANCESTRAL SPECIES		ENSGT00940000155820	ENSGT00940000156409	ENSGT00940000153629.a.a	ENSGT00510000046608.B	ENSGT00940000157279	ENSGT00390000002873	ENSGT00390000007318	ENSGT00390000003322	ENSGT01030000234637.b.d.b	ENSGT00590000083094.a.a	ENSGT00940000160100	ENSGT00390000005214.a	ENSGT00940000155048	ENSGT00910000148820	ENSGT00630000090979	ENSGT00390000000378.d.b.eb.g.a.b #22	ENSGT00940000163977	ENSGT00390000005497	ENSGT00950000183004.a.a.a.a.a	ENSGT00390000011228.b.a	ENSGT00940000160985	ENSGT00940000157869	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225	ENSGT00950000182846.a.a.a.b	ENSGT00390000003224.A	ENSGT00940000156286.pb	ENSGT00940000157660
Red fox	MODERN SPECIES	5	ADAMTS9 (ENSVVUG00000014705)	PRICKLE2 (ENSVVUG00000014773)	PSMD6 (ENSVVUG00000014782)	ATXN7 (ENSVVUG00000014784)	THOC7 (ENSVVUG00000014787)	ENSVVUG00000014789	CUNH3orf49 (ENSVVUG00000014791)	SNTN (ENSVVUG00000014798)	SYNPR (ENSVVUG00000014802)	ENSVVUG00000014819	FEZF2 (ENSVVUG00000014834)	CUNH3orf14 (ENSVVUG00000014835)	PTPRG (ENSVVUG00000014881)	ENSVVUG00000015322	ENSVVUG00000015330	ENSVVUG00000015339 #22	ENSVVUG00000015358	CFAP20DC (ENSVVUG00000015388)	ENSVVUG00000015431	ENSVVUG00000015434	FAM107A (ENSVVUG00000015450)	ACOX2 (ENSVVUG00000015454)	KCTD6 (ENSVVUG00000015462)	PDHB (ENSVVUG00000015465)	PXK (ENSVVUG00000015499)	ENSVVUG00000016087	ABHD6 (ENSVVUG00000016097)	DNASE1L3 (ENSVVUG00000016103)	ENSVVUG00000016106	ENSVVUG00000016113	FLNB (ENSVVUG00000016468)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000156409	ENSGT00940000153629.a.a	ENSGT00510000046608.B	ENSGT00940000157279	ENSGT00390000002873	ENSGT00390000007318	ENSGT00390000003322	ENSGT01030000234637.b.d.b	ENSGT00590000083094.a.a	ENSGT00940000160100	ENSGT00390000005214.a	ENSGT00940000155048	ENSGT00910000148820	ENSGT00390000018085.a.b.a.c.a	ENSGT00630000090979	ENSGT00390000000378.d.b.eb.g.a.b #22	ENSGT00940000163977	ENSGT00390000005497	ENSGT00950000183004.a.a.a.a.a	ENSGT00390000011228.b.a	ENSGT00940000160985	ENSGT00940000157869	ENSGT00940000155146	ENSGT00390000017669	ENSGT00530000065109	ENSGT00510000048121	ENSGT00510000047225	ENSGT00950000182846.a.a.a.b	ENSGT00940000156286.pb	ENSGT00940000157660	ENSGT00390000005529.a
Dingo	MODERN SPECIES	401	ADAMTS9 (ENSCAFG00020010936)	PRICKLE2 (ENSCAFG00020010850)	PSMD6 (ENSCAFG00020010838)	ATXN7 (ENSCAFG00020010789)	THOC7 (ENSCAFG00020010785)	C3orf49 (ENSCAFG00020010782)	SNTN (ENSCAFG00020010778)	SYNPR (ENSCAFG00020010764)	ENSCAFG00020010590	FEZF2 (ENSCAFG00020010552)	C3orf14 (ENSCAFG00020010549)	ENSCAFG00020010546	PTPRG (ENSCAFG00020010252)	ENSCAFG00020010227	ENSCAFG00020010226	ENSCAFG00020010221 #22	ENSCAFG00020010214	CFAP20DC (ENSCAFG00020010174)	FAM3D (ENSCAFG00020010163)	FAM107A (ENSCAFG00020010161)	ACOX2 (ENSCAFG00020010158)	KCTD6 (ENSCAFG00020010154)	PDHB (ENSCAFG00020010134)	PXK (ENSCAFG00020010131)	HTD2 (ENSCAFG00020010130)	RPP14 (ENSCAFG00020010128)	ABHD6 (ENSCAFG00020010122)	DNASE1L3 (ENSCAFG00020010119)	ENSCAFG00020010019	FLNB (ENSCAFG00020008260)	SLMAP (ENSCAFG00020007038)
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.g.b #22
Canidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.g.b #22
Red fox	MODERN SPECIES	32	PRICKLE1 (ENSVVUG00000016814)	ZCRB1 (ENSVVUG00000016801)	PPHLN1 (ENSVVUG00000016757)	YAF2 (ENSVVUG00000016743)	GXYLT1 (ENSVVUG00000016736)	PDZRN4 (ENSVVUG00000016724)	CNTN1 (ENSVVUG00000016676)	ENSVVUG00000016661	LRRK2 (ENSVVUG00000016479)	SLC2A13 (ENSVVUG00000016437)	C12orf40 (ENSVVUG00000016414)	ABCD2 (ENSVVUG00000016394)	KIF21A (ENSVVUG00000012982)	CPNE8 (ENSVVUG00000012781)	ENSVVUG00000012772	ENSVVUG00000012767 #22	ENSVVUG00000012762	SYT10 (ENSVVUG00000012752)	PKP2 (ENSVVUG00000012741)	YARS2 (ENSVVUG00000012736)	DNM1L (ENSVVUG00000012652)	FGD4 (ENSVVUG00000012593)	BICD1 (ENSVVUG00000012549)	KIAA1551 (ENSVVUG00000012517)	AMN1 (ENSVVUG00000012511)	ETFBKMT (ENSVVUG00000012506)	DENND5B (ENSVVUG00000007385)	SINHCAF (ENSVVUG00000007293)	CAPRIN2 (ENSVVUG00000007217)	IPO8 (ENSVVUG00000007129)	ENSVVUG00000007116
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.g.b #22
Ursidae	ANCESTRAL SPECIES	34	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000162087 #19	ENSGT00940000154612.m.a.h ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.eb.g.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.db.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.f #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434
Ursus	ANCESTRAL SPECIES	347																ENSGT00390000000378.d.b.eb.g.b #22	ENSGT00390000001618 #23	ENSGT00940000165659
American black bear	MODERN SPECIES	125																ENSUAMG00000001755 #22	ENSUAMG00000001753 #23	ENSUAMG00000001750
Caniformia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.h #22
Caniformia_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.h #22
Ursidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.eb.h #22
Giant Panda	MODERN SPECIES	1107																ENSAMEG00000028946 #22
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b
Suina	ANCESTRAL SPECIES	20	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Pig	MODERN SPECIES	5	MAPKAPK5 (ENSSSCG00000009890)	ALDH2 (ENSSSCG00000009889)	BICDL1 (ENSSSCG00000009896) #10	RAB35 (ENSSSCG00000033876) #11	GCN1 (ENSSSCG00000009898) #12	RPLP0 (ENSSSCG00000036014) ##13	PXN (ENSSSCG00000040546) #14	SIRT4 (ENSSSCG00000009901) #15	PLA2G1B (ENSSSCG00000029501) #16	MSI1 (ENSSSCG00000029365) #17	ENSSSCG00000062912	COX6A1 (ENSSSCG00000039265) ##18	GATC (ENSSSCG00000032747) #20	SRSF9 (ENSSSCG00000009906) #21	ENSSSCG00000031756 #23	DYNLL1 (ENSSSCG00000009904) #22	COQ5 (ENSSSCG00000009903) #24	RNF10 (ENSSSCG00000009910) #25	ENSSSCG00000009911	POP5 (ENSSSCG00000009912) #26	CABP1 (ENSSSCG00000056057) #27	MLEC (ENSSSCG00000009914) #28	UNC119B (ENSSSCG00000059198) #29	ACADS (ENSSSCG00000009916) #30	SPPL3 (ENSSSCG00000009917) #31	HNF1A (ENSSSCG00000009919) #33	C12orf43 (ENSSSCG00000024329) #34	OASL (ENSSSCG00000009921) #35	C12orf76 (ENSSSCG00000040422)	ANKRD13A (ENSSSCG00000009924)	GIT2 (ENSSSCG00000009925)
Chacoan peccary	MODERN SPECIES	812	ALDH2 (ENSCWAG00000015605)	BICDL1 (ENSCWAG00000015495) #10	RAB35 (ENSCWAG00000015436) #11	GCN1 (ENSCWAG00000014778) #12	ENSCWAG00000014622 ##13	ENSCWAG00000014442 #14	SIRT4 (ENSCWAG00000014375) #15	PLA2G1B (ENSCWAG00000014263) #16	MSI1 (ENSCWAG00000014121) #17	ENSCWAG00000014090	COX6A1 (ENSCWAG00000014059) ##18	ENSCWAG00000014027	GATC (ENSCWAG00000013975) #20	SRSF9 (ENSCWAG00000013938) #21	ENSCWAG00000013914 #23	DYNLL1 (ENSCWAG00000013874) #22	COQ5 (ENSCWAG00000013808) #24	RNF10 (ENSCWAG00000013724) #25	POP5 (ENSCWAG00000013649) #26	CABP1 (ENSCWAG00000013481) #27	MLEC (ENSCWAG00000013410) #28	UNC119B (ENSCWAG00000013356) #29	ACADS (ENSCWAG00000013312) #30	SPPL3 (ENSCWAG00000013187) #31	HNF1A (ENSCWAG00000012950) #33	C12orf43 (ENSCWAG00000012899) #34	OASL (ENSCWAG00000012666) #35	ENSCWAG00000012600	C12orf76 (ENSCWAG00000012568)	ANKRD13A (ENSCWAG00000012507)	GIT2 (ENSCWAG00000011894)
Artiodactyla_a	DUPLICATION
Artiodactyla_a	DUPLICATION
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a #22	ENSGT00390000000378.d.b.gb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b
Artiodactyla_b	DUPLICATION
Artiodactyla_b	ANCESTRAL SPECIES	57														ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a #22
Sperm whale	MODERN SPECIES	7	NUCB2 (ENSPCTG00005004244)	ENSPCTG00005015020	PIK3C2A (ENSPCTG00005014624)	ENSPCTG00005014567	RPS13 (ENSPCTG00005014477)	PLEKHA7 (ENSPCTG00005014003)	ENSPCTG00005013965	C16H11orf58 (ENSPCTG00005013885)	SOX6 (ENSPCTG00005013480)	INSC (ENSPCTG00005013109)	ENSPCTG00005012995	ENSPCTG00005012923	ENSPCTG00005012901	ENSPCTG00005012814	CYP2R1 (ENSPCTG00005012742)	ENSPCTG00005012726 #22	ENSPCTG00005012691	PDE3B (ENSPCTG00005012346)	PSMA1 (ENSPCTG00005012167)	COPB1 (ENSPCTG00005012104)	RRAS2 (ENSPCTG00005012007)	SPON1 (ENSPCTG00005011836)	FAR1 (ENSPCTG00005011756)	PTH (ENSPCTG00005011723)	BTBD10 (ENSPCTG00005011536)	ARNTL (ENSPCTG00005011154)	RASSF10 (ENSPCTG00005011126)	ENSPCTG00005011111	PARVA (ENSPCTG00005010894)	MICAL2 (ENSPCTG00005010521)	ENSPCTG00005010379
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a #22
Monodontidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a #22
Beluga whale	MODERN SPECIES	32	PIK3C2A (ENSDLEG00000020912)	ENSDLEG00000020962	RPS13 (ENSDLEG00000005358)	PLEKHA7 (ENSDLEG00000005386)	CUNH11orf58 (ENSDLEG00000005498)	SOX6 (ENSDLEG00000005509)	ENSDLEG00000005557	INSC (ENSDLEG00000005606)	ENSDLEG00000005632	ENSDLEG00000005645	ENSDLEG00000005660	ENSDLEG00000005668	ENSDLEG00000005674	CYP2R1 (ENSDLEG00000005681)	PDE3B (ENSDLEG00000005717)	ENSDLEG00000005733 #22	ENSDLEG00000005736	PSMA1 (ENSDLEG00000005746)	COPB1 (ENSDLEG00000005761)	RRAS2 (ENSDLEG00000005779)	SPON1 (ENSDLEG00000005782)	FAR1 (ENSDLEG00000005790)	ENSDLEG00000005799	PTH (ENSDLEG00000005808)	BTBD10 (ENSDLEG00000005823)	ARNTL (ENSDLEG00000005839)	RASSF10 (ENSDLEG00000005856)	TEAD1 (ENSDLEG00000005889)	PARVA (ENSDLEG00000005943)	MICAL2 (ENSDLEG00000006015)	ENSDLEG00000006212
Pecora	ANCESTRAL SPECIES	67														ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Percora_a	ANCESTRAL SPECIES	68														ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Bovidae	ANCESTRAL SPECIES	34														ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22	ENSGT00940000162668	ENSGT00940000163888	ENSGT00940000158335	ENSGT00530000065541	ENSGT00940000157822	ENSGT00940000164266	ENSGT00940000159162	ENSGT00480000042679.a	ENSGT00940000159092.d	ENSGT00940000159149	ENSGT00940000153412.A.a.d	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990	ENSGT00940000162726	ENSGT00940000163396
Bovinae	DUPLICATION
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a.a #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a.a #22
Bos_a	ANCESTRAL SPECIES	4	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a	ENSGT00940000156082.g	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a.b #22	ENSGT00390000008712	ENSGT00730000111116	ENSGT00940000156994	ENSGT00940000156972	ENSGT00940000161291	ENSGT00390000005372	ENSGT00940000160454	ENSGT00940000153173.b.a	ENSGT00940000153979.A	ENSGT00940000155518	ENSGT00390000000378.d.b.fb.a.a.a #22	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B	ENSGT00940000157782	ENSGT00940000157130	ENSGT00960000186726	ENSGT00940000154224.a	ENSGT00950000183072.b.b	ENSGT00940000156609	ENSGT00390000005979.b	ENSGT00940000154224.b.g	ENSGT00940000154224.b.h	ENSGT00940000161368	ENSGT00940000162042	ENSGT00530000063779.A
Wild yak	MODERN SPECIES	891	ITGB6 (ENSBMUG00000017042)	RBMS1 (ENSBMUG00000017123)	ENSBMUG00000017136 #23	ENSBMUG00000017143 #22	TANK (ENSBMUG00000017182)	PSMD14 (ENSBMUG00000017217)	TBR1 (ENSBMUG00000017252)	ENSBMUG00000017270	SLC4A10 (ENSBMUG00000017462)	DPP4 (ENSBMUG00000017564)	GCG (ENSBMUG00000017603)	FAP (ENSBMUG00000017718)	IFIH1 (ENSBMUG00000017838)	GCA (ENSBMUG00000017889)	KCNH7 (ENSBMUG00000017964)	ENSBMUG00000018006 #22
Domestic yak	MODERN SPECIES	11	ENSBGRG00000014823	RBMS1 (ENSBGRG00000014860)	ENSBGRG00000015433 #22	ENSBGRG00000015467	TANK (ENSBGRG00000015484)	ENSBGRG00000015601	PSMD14 (ENSBGRG00000015635)	TBR1 (ENSBGRG00000015789)	SLC4A10 (ENSBGRG00000015954)	DPP4 (ENSBGRG00000016318)	GCG (ENSBGRG00000016767)	FAP (ENSBGRG00000016859)	IFIH1 (ENSBGRG00000017350)	GCA (ENSBGRG00000017546)	KCNH7 (ENSBGRG00000017704)	ENSBGRG00000018305 #22	ENSBGRG00000018395	FIGN (ENSBGRG00000018428)	GRB14 (ENSBGRG00000018525)	COBLL1 (ENSBGRG00000018928)	SLC38A11 (ENSBGRG00000019278)	SCN3A (ENSBGRG00000019550)	ENSBGRG00000019945	SCN2A (ENSBGRG00000020107)	CSRNP3 (ENSBGRG00000021834)	GALNT3 (ENSBGRG00000021944)	TTC21B (ENSBGRG00000022141)	SCN1A (ENSBGRG00000022402)	SCN9A (ENSBGRG00000022714)	ENSBGRG00000022976	SCN7A (ENSBGRG00000023014)
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.a.a #22
Hybrid Bos Indicus	MODERN SPECIES	11	ACVR1 (ENSBIXG00005020163)	UPP2 (ENSBIXG00005003353)	CCDC148 (ENSBIXG00005003408)	PKP4 (ENSBIXG00005020435)	DAPL1 (ENSBIXG00005007153)	TANC1 (ENSBIXG00005020592)	WDSUB1 (ENSBIXG00005020681)	ENSBIXG00005020720	BAZ2B (ENSBIXG00005020764)	MARCHF7 (ENSBIXG00005003543)	CD302 (ENSBIXG00005021114)	LY75 (ENSBIXG00005021164)	PLA2R1 (ENSBIXG00005021207)	ITGB6 (ENSBIXG00005021514)	ENSBIXG00005021553	ENSBIXG00005021563 #22	RBMS1 (ENSBIXG00005021721)	TANK (ENSBIXG00005021819)	ENSBIXG00005021853	PSMD14 (ENSBIXG00005021873)	TBR1 (ENSBIXG00005021900)	ENSBIXG00005003696	SLC4A10 (ENSBIXG00005022084)	DPP4 (ENSBIXG00005022213)	GCG (ENSBIXG00005022246)	FAP (ENSBIXG00005003838)	IFIH1 (ENSBIXG00005003872)	ENSBIXG00005006274	KCNH7 (ENSBIXG00005022781)	FIGN (ENSBIXG00005022877)	GRB14 (ENSBIXG00005022978)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000158842	ENSGT00940000160160	ENSGT00940000161094	ENSGT00940000153988.A	ENSGT00940000155773.b	ENSGT00940000154574.d	ENSGT00940000155655.B	ENSGT00940000157230	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a	ENSGT00390000000378.d.b.fb.a.a.b #22	ENSGT00940000156082.g	ENSGT00390000008712	ENSGT00730000111116	ENSGT00940000156994	ENSGT00510000046986.x.b.b.d	ENSGT00940000156972	ENSGT00940000161291	ENSGT00390000005372	ENSGT00940000160454	ENSGT00940000153173.b.a	ENSGT00940000153979.A	ENSGT00940000155518	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B
Bos	ANCESTRAL SPECIES	129															ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a.b #22
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000161094	ENSGT00940000153988.A	ENSGT00940000155773.b.f	ENSGT00940000154574.d	ENSGT00940000155655.B	ENSGT00940000157230	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a	ENSGT00940000156082.g	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a.b #22	ENSGT00390000008712	ENSGT00730000111116	ENSGT00940000156994	ENSGT00940000156972	ENSGT00940000161291	ENSGT00390000005372	ENSGT00940000160454	ENSGT00940000153173.b.a	ENSGT00940000153979.A	ENSGT00940000155518	ENSGT00390000000378.d.b.fb.a.a.a #22	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B	ENSGT00940000157782
Wild yak	MODERN SPECIES	891							ENSBMUG00000016677	MARCHF7 (ENSBMUG00000016739)	CD302 (ENSBMUG00000016780)	LY75 (ENSBMUG00000016810)	PLA2R1 (ENSBMUG00000016876)	ENSBMUG00000016912	ITGB6 (ENSBMUG00000017042)	RBMS1 (ENSBMUG00000017123)	ENSBMUG00000017136 #23	ENSBMUG00000017143 #22	TANK (ENSBMUG00000017182)	PSMD14 (ENSBMUG00000017217)	TBR1 (ENSBMUG00000017252)	ENSBMUG00000017270	SLC4A10 (ENSBMUG00000017462)	DPP4 (ENSBMUG00000017564)	GCG (ENSBMUG00000017603)	FAP (ENSBMUG00000017718)	IFIH1 (ENSBMUG00000017838)	GCA (ENSBMUG00000017889)	KCNH7 (ENSBMUG00000017964)	ENSBMUG00000018006 #22
Domestic yak	MODERN SPECIES	11	UPP2 (ENSBGRG00000009647)	CCDC148 (ENSBGRG00000009770)	PKP4 (ENSBGRG00000010064)	ENSBGRG00000010385	TANC1 (ENSBGRG00000010534)	WDSUB1 (ENSBGRG00000010639)	BAZ2B (ENSBGRG00000010962)	ENSBGRG00000011593	MARCHF7 (ENSBGRG00000011679)	CD302 (ENSBGRG00000012068)	LY75 (ENSBGRG00000012245)	PLA2R1 (ENSBGRG00000012680)	ITGB6 (ENSBGRG00000014060)	ENSBGRG00000014823	RBMS1 (ENSBGRG00000014860)	ENSBGRG00000015433 #22	ENSBGRG00000015467	TANK (ENSBGRG00000015484)	ENSBGRG00000015601	PSMD14 (ENSBGRG00000015635)	TBR1 (ENSBGRG00000015789)	SLC4A10 (ENSBGRG00000015954)	DPP4 (ENSBGRG00000016318)	GCG (ENSBGRG00000016767)	FAP (ENSBGRG00000016859)	IFIH1 (ENSBGRG00000017350)	GCA (ENSBGRG00000017546)	KCNH7 (ENSBGRG00000017704)	ENSBGRG00000018305 #22	ENSBGRG00000018395	FIGN (ENSBGRG00000018428)
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000158842	ENSGT00940000160160	ENSGT00940000161094	ENSGT00940000153988.A	ENSGT00940000155773.b.f	ENSGT00940000154574.d	ENSGT00940000155655.B	ENSGT00940000157230	ENSGT00940000155359	ENSGT00950000182878.b.b.k.a.a	ENSGT00530000063836.a	ENSGT01050000244842.a.b.a	ENSGT01050000244842.a.b.b.a.a.a	ENSGT01050000244842.a.b.b.a.a.b	ENSGT01100000263555.a.a.a	ENSGT00390000000378.d.b.fb.a.a.b #22	ENSGT00940000156082.g	ENSGT00390000008712	ENSGT00730000111116	ENSGT00940000156994	ENSGT00510000046986.x.b.b.d	ENSGT00940000156972	ENSGT00940000161291	ENSGT00390000005372	ENSGT00940000160454	ENSGT00940000153173.b.a	ENSGT00940000153979.A	ENSGT00940000155518	ENSGT00940000157526.a	ENSGT00940000158609	ENSGT00530000063608.B
Cow	MODERN SPECIES	11	UPP2 (ENSBTAG00000012801)	CCDC148 (ENSBTAG00000004267)	ENSBTAG00000049997	PKP4 (ENSBTAG00000013773)	DAPL1 (ENSBTAG00000032481)	TANC1 (ENSBTAG00000004177)	WDSUB1 (ENSBTAG00000004184)	BAZ2B (ENSBTAG00000020654)	ENSBTAG00000054190	MARCHF7 (ENSBTAG00000008755)	CD302 (ENSBTAG00000038195)	LY75 (ENSBTAG00000017797)	PLA2R1 (ENSBTAG00000032515)	ITGB6 (ENSBTAG00000009080)	ENSBTAG00000054546	ENSBTAG00000047240 #22	RBMS1 (ENSBTAG00000005180)	TANK (ENSBTAG00000006654)	PSMD14 (ENSBTAG00000021691)	TBR1 (ENSBTAG00000021692)	SLC4A10 (ENSBTAG00000015317)	DPP4 (ENSBTAG00000048246)	GCG (ENSBTAG00000000730)	FAP (ENSBTAG00000008140)	IFIH1 (ENSBTAG00000008142)	GCA (ENSBTAG00000018446)	KCNH7 (ENSBTAG00000001899)	FIGN (ENSBTAG00000008704)	GRB14 (ENSBTAG00000019291)	ENSBTAG00000053731	COBLL1 (ENSBTAG00000005501)
American bison	MODERN SPECIES	3312		ACVR1 (ENSBBBG00000013902)	UPP2 (ENSBBBG00000013916)	CCDC148 (ENSBBBG00000003047)	PKP4 (ENSBBBG00000013993)	DAPL1 (ENSBBBG00000003082)	TANC1 (ENSBBBG00000014012)	WDSUB1 (ENSBBBG00000014073)	BAZ2B (ENSBBBG00000003195)	ENSBBBG00000014151	MARCHF7 (ENSBBBG00000014186)	CD302 (ENSBBBG00000014200)	LY75 (ENSBBBG00000014226)	PLA2R1 (ENSBBBG00000014279)	ITGB6 (ENSBBBG00000014399)	ENSBBBG00000008288 #22	RBMS1 (ENSBBBG00000003334)	TANK (ENSBBBG00000003352)	PSMD14 (ENSBBBG00000003364)	TBR1 (ENSBBBG00000014500)	ENSBBBG00000014504	SLC4A10 (ENSBBBG00000014578)	DPP4 (ENSBBBG00000007218)	GCG (ENSBBBG00000003533)	FAP (ENSBBBG00000014785)	IFIH1 (ENSBBBG00000014857)	GCA (ENSBBBG00000014884)	ENSBBBG00000014889 #23	ENSBBBG00000002806 #22	KCNH7 (ENSBBBG00000001182)	FIGN (ENSBBBG00000001161)
Caprinae	ANCESTRAL SPECIES	38									ENSGT00940000162668	ENSGT00940000158335	ENSGT00390000012807.cb.b	ENSGT00940000154837.f.b	ENSGT00940000157822	ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22	ENSGT00940000159162	ENSGT00480000042679.a	ENSGT00940000159092.d	ENSGT00940000159149	ENSGT00940000153412.A.a.d.c	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990	ENSGT00940000162726	ENSGT00940000163081	ENSGT00940000160792	ENSGT01030000234531.A.a	ENSGT00390000007539.i.b.a	ENSGT00940000153412.B	ENSGT00940000161244	ENSGT00940000163008
Goat	DUPLICATION
Goat	MODERN SPECIES	11	RBMS1 (ENSCHIG00000023380)	ENSCHIG00000010181 #22	ENSCHIG00000008553	ENSCHIG00000022618	ENSCHIG00000009480	ENSCHIG00000026247	TBR1 (ENSCHIG00000011769)	SLC4A10 (ENSCHIG00000027183)	DPP4 (ENSCHIG00000021048)	GCG (ENSCHIG00000021277)	FAP (ENSCHIG00000004276)	IFIH1 (ENSCHIG00000019848)	GCA (ENSCHIG00000025003)	KCNH7 (ENSCHIG00000026905)	ENSCHIG00000013786 #23	ENSCHIG00000024808 #22	FIGN (ENSCHIG00000018013)	GRB14 (ENSCHIG00000026062)	ENSCHIG00000010255	COBLL1 (ENSCHIG00000024975)	SLC38A11 (ENSCHIG00000014139)	SCN3A (ENSCHIG00000016974)	SCN2A (ENSCHIG00000023553)	CSRNP3 (ENSCHIG00000023391)	GALNT3 (ENSCHIG00000024307)	TTC21B (ENSCHIG00000027050)	SCN1A (ENSCHIG00000024980)	SCN9A (ENSCHIG00000020127)	SCN7A (ENSCHIG00000018164)	XIRP2 (ENSCHIG00000008742)	B3GALT1 (ENSCHIG00000015105)
Goat	MODERN SPECIES	11	CCDC148 (ENSCHIG00000022642)	PKP4 (ENSCHIG00000018303)	ENSCHIG00000002234	DAPL1 (ENSCHIG00000023463)	TANC1 (ENSCHIG00000026445)	WDSUB1 (ENSCHIG00000009513)	ENSCHIG00000017676	ENSCHIG00000022217	ENSCHIG00000021712	MARCHF7 (ENSCHIG00000018734)	CD302 (ENSCHIG00000027086)	LY75 (ENSCHIG00000013878)	PLA2R1 (ENSCHIG00000010637)	ITGB6 (ENSCHIG00000013972)	RBMS1 (ENSCHIG00000023380)	ENSCHIG00000010181 #22	ENSCHIG00000008553	ENSCHIG00000022618	ENSCHIG00000009480	ENSCHIG00000026247	TBR1 (ENSCHIG00000011769)	SLC4A10 (ENSCHIG00000027183)	DPP4 (ENSCHIG00000021048)	GCG (ENSCHIG00000021277)	FAP (ENSCHIG00000004276)	IFIH1 (ENSCHIG00000019848)	GCA (ENSCHIG00000025003)	KCNH7 (ENSCHIG00000026905)	ENSCHIG00000013786 #23	ENSCHIG00000024808 #22	FIGN (ENSCHIG00000018013)
Siberian musk deer	MODERN SPECIES	346	ACVR1 (ENSMMSG00000024225)	UPP2 (ENSMMSG00000024217)	CCDC148 (ENSMMSG00000024199)	PKP4 (ENSMMSG00000024173)	ENSMMSG00000024171	DAPL1 (ENSMMSG00000024170)	TANC1 (ENSMMSG00000024160)	WDSUB1 (ENSMMSG00000024154)	BAZ2B (ENSMMSG00000024126)	ENSMMSG00000024107	MARCHF7 (ENSMMSG00000024094)	CD302 (ENSMMSG00000024084)	LY75 (ENSMMSG00000024075)	PLA2R1 (ENSMMSG00000024062)	ITGB6 (ENSMMSG00000023980)	ENSMMSG00000023960 #22	ENSMMSG00000023953	ENSMMSG00000023951	TANK (ENSMMSG00000023948)	PSMD14 (ENSMMSG00000023944)	TBR1 (ENSMMSG00000023939)	ENSMMSG00000023934	SLC4A10 (ENSMMSG00000023858)	DPP4 (ENSMMSG00000023825)	GCG (ENSMMSG00000023816)	FAP (ENSMMSG00000023776)	IFIH1 (ENSMMSG00000023754)	GCA (ENSMMSG00000023742)	ENSMMSG00000023738 #22	KCNH7 (ENSMMSG00000023675)	ENSMMSG00000023658
Artiodactyla_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Odontoceti	ANCESTRAL SPECIES	8	ENSGT00390000014476	ENSGT00940000160428	ENSGT00550000075041	ENSGT00390000011873	ENSGT00940000161613	ENSGT00390000007746	ENSGT00390000014148	ENSGT00940000160010	ENSGT00390000004458	ENSGT00940000156231	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00390000000378.d.b.fb.a.b #22	ENSGT00940000156959.B	ENSGT00940000157531.gb.b	ENSGT00940000157531.gb.a	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01060000249362	ENSGT00940000159718	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387	ENSGT00940000159447	ENSGT00940000160710	ENSGT00940000159976
Odontoceti_a	ANCESTRAL SPECIES	19	ENSGT00390000014476	ENSGT00940000160428	ENSGT00550000075041	ENSGT00390000011873	ENSGT00940000161613	ENSGT00390000007746	ENSGT00390000014148	ENSGT00940000160010	ENSGT00390000004458	ENSGT00940000156231	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00390000000378.d.b.fb.a.b #22	ENSGT00940000156959.B	ENSGT00940000157531.gb.b	ENSGT00940000157531.gb.a	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01060000249362	ENSGT00940000159718	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387	ENSGT00940000159447	ENSGT00940000160710	ENSGT00940000159976
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT00390000014476	ENSGT00940000160428	ENSGT00550000075041	ENSGT00390000011873	ENSGT00940000161613	ENSGT00390000007746	ENSGT00390000014148	ENSGT00940000160010	ENSGT00390000004458	ENSGT00940000156231	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00390000000378.d.b.fb.a.b #22	ENSGT00940000156959.B	ENSGT00940000157531.gb.b	ENSGT00940000157531.gb.a	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01060000249362	ENSGT00940000159718	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387	ENSGT00940000159447	ENSGT00940000160710	ENSGT00940000159976
Monodontidae	ANCESTRAL SPECIES	5	ENSGT00390000014476	ENSGT00940000160428	ENSGT00550000075041	ENSGT00390000011873	ENSGT00940000161613	ENSGT00390000007746	ENSGT00390000014148	ENSGT00940000160010	ENSGT00390000004458	ENSGT00940000156231	ENSGT00940000153181.z	ENSGT00950000182858.A.b.b	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00390000000378.d.b.fb.a.b #22	ENSGT00940000156959.B	ENSGT00940000157531.gb.b	ENSGT00940000157531.gb.a	ENSGT00940000159211.C	ENSGT00940000159789	ENSGT00940000154143.e	ENSGT00940000153385.b.a.a	ENSGT01060000249362	ENSGT00940000159718	ENSGT00940000157589	ENSGT00530000063085.B	ENSGT00940000159387	ENSGT00940000159447	ENSGT00940000160710	ENSGT00940000159976
Narwhal	MODERN SPECIES	312	TTF1 (ENSMMNG00015014693)	CFAP77 (ENSMMNG00015014748)	BARHL1 (ENSMMNG00015014770)	DDX31 (ENSMMNG00015014795)	GTF3C4 (ENSMMNG00015014850)	AK8 (ENSMMNG00015014866)	TSC1 (ENSMMNG00015014899)	GFI1B (ENSMMNG00015014939)	GTF3C5 (ENSMMNG00015014986)	CEL (ENSMMNG00015015072)	RALGDS (ENSMMNG00015015227)	GBGT1 (ENSMMNG00015015453)	MRPS2 (ENSMMNG00015015534)	PIERCE1 (ENSMMNG00015015543)	PPP1R26 (ENSMMNG00015015550)	ENSMMNG00015015555 #22	OLFM1 (ENSMMNG00015015563)	FCN1 (ENSMMNG00015014173)	COL5A1 (ENSMMNG00015014221)	RXRA (ENSMMNG00015014359)	WDR5 (ENSMMNG00015014388)	BRD3 (ENSMMNG00015014410)	ENSMMNG00015014467	VAV2 (ENSMMNG00015014535)	SARDH (ENSMMNG00015014691)	DBH (ENSMMNG00015014752)	FAM163B (ENSMMNG00015014778)	ADAMTSL2 (ENSMMNG00015014791)	MYMK (ENSMMNG00015014813)	SLC2A6 (ENSMMNG00015014833)	ADAMTS13 (ENSMMNG00015014897)
Beluga whale	MODERN SPECIES	19	CFAP77 (ENSDLEG00000004940)	BARHL1 (ENSDLEG00000004938)	DDX31 (ENSDLEG00000004925)	GTF3C4 (ENSDLEG00000004892)	AK8 (ENSDLEG00000004877)	ENSDLEG00000004857	TSC1 (ENSDLEG00000004840)	GFI1B (ENSDLEG00000004827)	GTF3C5 (ENSDLEG00000004811)	CEL (ENSDLEG00000004676)	RALGDS (ENSDLEG00000004623)	ENSDLEG00000004604	MRPS2 (ENSDLEG00000004586)	CUNH9orf116 (ENSDLEG00000004579)	PPP1R26 (ENSDLEG00000004572)	ENSDLEG00000004532 #22	ENSDLEG00000004526	ENSDLEG00000004521	ENSDLEG00000004514	ENSDLEG00000004503	COL5A1 (ENSDLEG00000004399)	RXRA (ENSDLEG00000004352)	WDR5 (ENSDLEG00000004313)	BRD3 (ENSDLEG00000004296)	VAV2 (ENSDLEG00000004207)	SARDH (ENSDLEG00000003809)	DBH (ENSDLEG00000003721)	FAM163B (ENSDLEG00000003690)	ENSDLEG00000003687	MYMK (ENSDLEG00000003677)	SLC2A6 (ENSDLEG00000003650)
Vaquita	MODERN SPECIES	17	CFAP77 (ENSPSNG00000010381)	BARHL1 (ENSPSNG00000010335)	DDX31 (ENSPSNG00000010312)	GTF3C4 (ENSPSNG00000010263)	AK8 (ENSPSNG00000010223)	ENSPSNG00000010143	TSC1 (ENSPSNG00000009941)	GFI1B (ENSPSNG00000009574)	GTF3C5 (ENSPSNG00000009435)	CEL (ENSPSNG00000009284)	RALGDS (ENSPSNG00000009004)	GBGT1 (ENSPSNG00000008899)	MRPS2 (ENSPSNG00000008854)	PIERCE1 (ENSPSNG00000008821)	PPP1R26 (ENSPSNG00000008807)	ENSPSNG00000008765 #22	OLFM1 (ENSPSNG00000009427)	ENSPSNG00000009306	ENSPSNG00000009178	COL5A1 (ENSPSNG00000008774)	RXRA (ENSPSNG00000008516)	WDR5 (ENSPSNG00000008438)	BRD3 (ENSPSNG00000008397)	VAV2 (ENSPSNG00000008237)	SARDH (ENSPSNG00000007978)	DBH (ENSPSNG00000007879)	FAM163B (ENSPSNG00000007849)	ADAMTSL2 (ENSPSNG00000007726)	MYMK (ENSPSNG00000007679)	SLC2A6 (ENSPSNG00000007615)	CACFD1 (ENSPSNG00000007556)
Sperm whale	MODERN SPECIES	4	UCK1 (ENSPCTG00005008011)	RAPGEF1 (ENSPCTG00005005974)	SETX (ENSPCTG00005005641)	ENSPCTG00005005608	ENSPCTG00005005572	ENSPCTG00005005551	ENSPCTG00005005541	DDX31 (ENSPCTG00005005522)	GTF3C4 (ENSPCTG00005005484)	AK8 (ENSPCTG00005005459)	ENSPCTG00005005432	TSC1 (ENSPCTG00005005336)	GFI1B (ENSPCTG00005005104)	MRPS2 (ENSPCTG00005005046)	C13H9orf116 (ENSPCTG00005005022)	ENSPCTG00005004983 #22	OLFM1 (ENSPCTG00005004913)	FCN1 (ENSPCTG00005004867)	COL5A1 (ENSPCTG00005004630)	WDR5 (ENSPCTG00005004552)	RXRA (ENSPCTG00005004526)	BRD3 (ENSPCTG00005004497)	BRD3OS (ENSPCTG00005004490)	VAV2 (ENSPCTG00005004328)	DBH (ENSPCTG00005017629)	FAM163B (ENSPCTG00005017596)	ADAMTSL2 (ENSPCTG00005017407)	MYMK (ENSPCTG00005017370)	REXO4 (ENSPCTG00005017319)	ENSPCTG00005017190	ENSPCTG00005017121
Pecora	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Bos_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.a.b #22
Wild yak	MODERN SPECIES	2691															ENSBMUG00000023478	ENSBMUG00000023485 #22	ENSBMUG00000023495	ENSBMUG00000023507	ENSBMUG00000023514
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a #22	ENSGT00390000000378.d.b.gb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Cetacea	DUPLICATION
Cetacea	ANCESTRAL SPECIES	11	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.a ##18	ENSGT00940000163530	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303.i	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.a ##18	ENSGT00940000163530	ENSGT00940000162087 #19	ENSGT00390000018351.m #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303.i	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.a ##18	ENSGT00940000163530	ENSGT00940000162087 #19	ENSGT00390000018351.m #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.a #22	ENSGT00390000001618.cb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303.i	ENSGT00950000182928.A.b	ENSGT00940000156383
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351.m #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303.i	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351.m #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b.a #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303.i	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Narwhal	MODERN SPECIES	295	MAPKAPK5 (ENSMMNG00015011720)	ALDH2 (ENSMMNG00015011653)	ENSMMNG00015011617	BICDL1 (ENSMMNG00015011592) #10	RAB35 (ENSMMNG00015011558) #11	GCN1 (ENSMMNG00015011468) #12	RPLP0 (ENSMMNG00015011415) #13	PXN (ENSMMNG00015011350) #14	SIRT4 (ENSMMNG00015011309) #15	PLA2G1B (ENSMMNG00015011284) #16	MSI1 (ENSMMNG00015011256) #17	ENSMMNG00015011243 ##18	TRIAP1 (ENSMMNG00015011229) #19	ENSMMNG00015011192 #20	SRSF9 (ENSMMNG00015011182) #21	ENSMMNG00015011168 #22	ENSMMNG00015011157 #23	COQ5 (ENSMMNG00015011128) #24	RNF10 (ENSMMNG00015011107) #25	POP5 (ENSMMNG00015011077) #26	CABP1 (ENSMMNG00015011027) #27	MLEC (ENSMMNG00015010991) #28	UNC119B (ENSMMNG00015010980) #29	ACADS (ENSMMNG00015010955) #30	SPPL3 (ENSMMNG00015010916) #31	HNF1A (ENSMMNG00015010876) #33	C12orf43 (ENSMMNG00015010845) #34	OASL (ENSMMNG00015010805) #35	ENSMMNG00015010767	ANKRD13A (ENSMMNG00015010737)	GIT2 (ENSMMNG00015010560)
Beluga whale	MODERN SPECIES	60	ENSDLEG00000019591	ENSDLEG00000018829	BICDL1 (ENSDLEG00000018772) #10	RAB35 (ENSDLEG00000018756) #11	GCN1 (ENSDLEG00000018026) #12	RPLP0 (ENSDLEG00000017943) #13	PXN (ENSDLEG00000017888)	SIRT4 (ENSDLEG00000017858) #15	PLA2G1B (ENSDLEG00000017837) #16	MSI1 (ENSDLEG00000017781) #17	ENSDLEG00000017764 ##18	ENSDLEG00000017750	GATC (ENSDLEG00000017690) #20	SRSF9 (ENSDLEG00000017680) #21	ENSDLEG00000017667 #23	ENSDLEG00000017658 #22	COQ5 (ENSDLEG00000017621) #24	RNF10 (ENSDLEG00000017556) #25	POP5 (ENSDLEG00000017538) #26	CABP1 (ENSDLEG00000017442) #27	UNC119B (ENSDLEG00000017424) #29	ACADS (ENSDLEG00000017398) #30	ENSDLEG00000017389	SPPL3 (ENSDLEG00000017362) #31	HNF1A (ENSDLEG00000017315) #33	CUNH12orf43 (ENSDLEG00000017295) #34	OASL (ENSDLEG00000017275) #35	ENSDLEG00000017263	ANKRD13A (ENSDLEG00000017213)	GIT2 (ENSDLEG00000017179)	TCHP (ENSDLEG00000017100)
Vaquita	MODERN SPECIES	5	ALDH2 (ENSPSNG00000007565)	ENSPSNG00000007525	BICDL1 (ENSPSNG00000007451) #10	RAB35 (ENSPSNG00000007407) #11	GCN1 (ENSPSNG00000007351) #12	RPLP0 (ENSPSNG00000007243) #13	PXN (ENSPSNG00000007071) #14	SIRT4 (ENSPSNG00000006915) #15	PLA2G1B (ENSPSNG00000006864) #16	MSI1 (ENSPSNG00000006799) #17	ENSPSNG00000006774 ##18	ENSPSNG00000006748	ENSPSNG00000006725 #20	SRSF9 (ENSPSNG00000006693) #21	ENSPSNG00000006669 #23	ENSPSNG00000006636 #22	COQ5 (ENSPSNG00000006587) #24	RNF10 (ENSPSNG00000006500) #25	POP5 (ENSPSNG00000006421) #26	CABP1 (ENSPSNG00000006266) #27	MLEC (ENSPSNG00000006186) #28	UNC119B (ENSPSNG00000006160) #29	ACADS (ENSPSNG00000006130) #30	SPPL3 (ENSPSNG00000006088) #31	HNF1A (ENSPSNG00000006004) #33	C12orf43 (ENSPSNG00000005939) #34	OASL (ENSPSNG00000005855) #35	ENSPSNG00000005814	ANKRD13A (ENSPSNG00000005777)	GIT2 (ENSPSNG00000005636)	ENSPSNG00000005516
Dolphin	MODERN SPECIES	3429												COX6A1 (ENSTTRG00000000142) ##18	ENSTTRG00000000143	GATC (ENSTTRG00000000144) #20	SRSF9 (ENSTTRG00000000145) #21	DYNLL1 (ENSTTRG00000000146) #22	COQ5 (ENSTTRG00000000147) #24	RNF10 (ENSTTRG00000000149) #25	POP5 (ENSTTRG00000000153) #26	MLEC (ENSTTRG00000000155) #28	UNC119B (ENSTTRG00000000157) #29	ACADS (ENSTTRG00000000159) #30	SPPL3 (ENSTTRG00000000160) #31
Blue whale	MODERN SPECIES	5	ENSBMSG00010008860	ENSBMSG00010008872	ENSBMSG00010008881	MAPKAPK5 (ENSBMSG00010008906)	ALDH2 (ENSBMSG00010008956)	BICDL1 (ENSBMSG00010008994) #10	RAB35 (ENSBMSG00010009059) #11	GCN1 (ENSBMSG00010009106) #12	ENSBMSG00010009142 #13	PXN (ENSBMSG00010009195) #14	SIRT4 (ENSBMSG00010009262) #15	PLA2G1B (ENSBMSG00010009278) #16	MSI1 (ENSBMSG00010009297) #17	ENSBMSG00010009318 ##18	ENSBMSG00010009328	ENSBMSG00010009345 #22	SRSF9 (ENSBMSG00010009360) #21	ENSBMSG00010009371 #23	COQ5 (ENSBMSG00010009382) #24	RNF10 (ENSBMSG00010009393) #25	POP5 (ENSBMSG00010009404) #26	CABP1 (ENSBMSG00010009425) #27	MLEC (ENSBMSG00010009459) #28	UNC119B (ENSBMSG00010009472) #29	ACADS (ENSBMSG00010009484) #30	SPPL3 (ENSBMSG00010009499) #31	HNF1A (ENSBMSG00010009512) #33	C12orf43 (ENSBMSG00010009532) #34	OASL (ENSBMSG00010009553) #35	ENSBMSG00010009586	CRYBB2 (ENSBMSG00010009613)
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.b #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.b #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.b #22
Odontoceti_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.b #22
Monodontidae	ANCESTRAL SPECIES	15	ENSGT00940000153137.a.b.b.a	ENSGT00390000015682	ENSGT00940000158961.e	ENSGT00940000154194.kb.a	ENSGT00390000006051.a.a.a.a	ENSGT00390000016051.j	ENSGT00940000159552	ENSGT00390000012569.b	ENSGT00390000003758	ENSGT00940000154185.g.a	ENSGT00940000159144.B	ENSGT00940000162467.b	ENSGT00390000000693	ENSGT00390000005130	ENSGT00390000006788.a.b	ENSGT00390000000378.d.b.fb.b.b #22	ENSGT00940000159907	ENSGT00390000013820	ENSGT00940000154512.a	ENSGT01070000253816.a.a.b	ENSGT00940000153313.B	ENSGT00940000158106	ENSGT00390000006601	ENSGT00390000011709	ENSGT00950000183174.B.b	ENSGT00940000156877	ENSGT00940000155175.A	ENSGT00940000155175.B	ENSGT00390000013956	ENSGT00940000157039.b	ENSGT00950000186331
Beluga whale	MODERN SPECIES	29	SIAH3 (ENSDLEG00000006761)	CBY2 (ENSDLEG00000006765)	SLC25A30 (ENSDLEG00000006823)	ENSDLEG00000007053	ENSDLEG00000007063	GTF2F2 (ENSDLEG00000007077)	KCTD4 (ENSDLEG00000007081)	GPALPP1 (ENSDLEG00000007086)	NUFIP1 (ENSDLEG00000007090)	ENSDLEG00000007097	TSC22D1 (ENSDLEG00000007106)	ENSDLEG00000007116	LACC1 (ENSDLEG00000007121)	CCDC122 (ENSDLEG00000007128)	ENOX1 (ENSDLEG00000007152)	ENSDLEG00000007189 #22	DNAJC15 (ENSDLEG00000007194)	EPSTI1 (ENSDLEG00000007205)	FAM216B (ENSDLEG00000007217)	TNFSF11 (ENSDLEG00000007228)	AKAP11 (ENSDLEG00000007242)	DGKH (ENSDLEG00000007260)	VWA8 (ENSDLEG00000007291)	RGCC (ENSDLEG00000007344)	NAA16 (ENSDLEG00000007348)	KBTBD7 (ENSDLEG00000007360)	KBTBD6 (ENSDLEG00000007365)	WBP4 (ENSDLEG00000007369)	ELF1 (ENSDLEG00000007377)	SUGT1 (ENSDLEG00000007385)	CNMD (ENSDLEG00000007399)
Narwhal	MODERN SPECIES	315	SIAH3 (ENSMMNG00015015004)	CBY2 (ENSMMNG00015014993)	COG3 (ENSMMNG00015014965)	ENSMMNG00015014952	ENSMMNG00015014942	ENSMMNG00015014913	KCTD4 (ENSMMNG00015014888)	GTF2F2 (ENSMMNG00015014875)	ENSMMNG00015014855	NUFIP1 (ENSMMNG00015014826)	TSC22D1 (ENSMMNG00015014797)	SERP2 (ENSMMNG00015014783)	LACC1 (ENSMMNG00015014682)	CCDC122 (ENSMMNG00015014672)	ENOX1 (ENSMMNG00015014653)	ENSMMNG00015014643 #22	ENSMMNG00015014636	EPSTI1 (ENSMMNG00015014629)	FAM216B (ENSMMNG00015014608)	TNFSF11 (ENSMMNG00015014578)	AKAP11 (ENSMMNG00015021253)	DGKH (ENSMMNG00015021180)	VWA8 (ENSMMNG00015021128)	RGCC (ENSMMNG00015021108)	NAA16 (ENSMMNG00015021061)	MTRF1 (ENSMMNG00015021028)	KBTBD7 (ENSMMNG00015021016)	ENSMMNG00015021006	WBP4 (ENSMMNG00015020981)	ELF1 (ENSMMNG00015020957)	ENSMMNG00015020940
Blue whale	MODERN SPECIES	11	AKAP6 (ENSBMSG00010013021)	ARHGAP5 (ENSBMSG00010012978)	NUBPL (ENSBMSG00010012964)	GPR33 (ENSBMSG00010012958)	DTD2 (ENSBMSG00010012949)	HEATR5A (ENSBMSG00010012932)	HECTD1 (ENSBMSG00010012906)	AP4S1 (ENSBMSG00010012875)	STRN3 (ENSBMSG00010012838)	COCH (ENSBMSG00010012783)	SCFD1 (ENSBMSG00010012723)	ENSBMSG00010012692	PRKD1 (ENSBMSG00010012633)	FOXG1 (ENSBMSG00010012602)	ENSBMSG00010012592	ENSBMSG00010012582 #22	ENSBMSG00010012567	NOVA1 (ENSBMSG00010012536)	STXBP6 (ENSBMSG00010012498)	GZMB (ENSBMSG00010012482)	ENSBMSG00010012468	GZMH (ENSBMSG00010012451)	ENSBMSG00010012441	ENSBMSG00010012434	ENSBMSG00010012407	ENSBMSG00010012369	ENSBMSG00010012361	SDR39U1 (ENSBMSG00010012347)	KHNYN (ENSBMSG00010012332)	CBLN3 (ENSBMSG00010012308)	NYNRIN (ENSBMSG00010012291)
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	14	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001618.cb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.j #27	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00940000163029
Percora_a	ANCESTRAL SPECIES	17	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001618.cb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.j #27	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00940000163029
Bovidae	ANCESTRAL SPECIES	17	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001618.cb.b #23	ENSGT00390000001618.cb.a #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.j #27	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Bovinae	ANCESTRAL SPECIES	13	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.d ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb.a #23	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
American bison	DUPLICATION
American bison	MODERN SPECIES	3135																ENSBBBG00000013044 #22	ENSBBBG00000007451 #23	ENSBBBG00000013048	CD180 (ENSBBBG00000002607)	MAST4 (ENSBBBG00000002690)	SREK1 (ENSBBBG00000013313)	ERBIN (ENSBBBG00000002910)	NLN (ENSBBBG00000013750)	SGTB (ENSBBBG00000013762)	TRAPPC13 (ENSBBBG00000013812)	TRIM23 (ENSBBBG00000013840)	PPWD1 (ENSBBBG00000002975)	CENPK (ENSBBBG00000013900)	ADAMTS6 (ENSBBBG00000003025)	ENSBBBG00000013931	CWC27 (ENSBBBG00000003037)
American bison	MODERN SPECIES	3351	MAPKAPK5 (ENSBBBG00000013207)	ALDH2 (ENSBBBG00000013184)	BICDL1 (ENSBBBG00000013161) #10	ENSBBBG00000002647	GCN1 (ENSBBBG00000009091) #12	RPLP0 (ENSBBBG00000002518) #13	PXN (ENSBBBG00000002491) #14	SIRT4 (ENSBBBG00000012800) #15	PLA2G1B (ENSBBBG00000007649) #16	MSI1 (ENSBBBG00000002472) #17	ENSBBBG00000007125 ##18	TRIAP1 (ENSBBBG00000012759) #19	GATC (ENSBBBG00000012755) #20	ENSBBBG00000012754 #21	ENSBBBG00000012742 #23	ENSBBBG00000012739 #22	COQ5 (ENSBBBG00000007974) #24	RNF10 (ENSBBBG00000012711) #25	POP5 (ENSBBBG00000002445) #26	ENSBBBG00000012665 #27	MLEC (ENSBBBG00000012633) #28	UNC119B (ENSBBBG00000012610) #29	ACADS (ENSBBBG00000002411) #30	SPPL3 (ENSBBBG00000012533) #31	HNF1A (ENSBBBG00000008105) #33	C12orf43 (ENSBBBG00000012482) #34	ENSBBBG00000012465 #35	ENSBBBG00000012456	ANKRD13A (ENSBBBG00000012454)	ENSBBBG00000012445	GIT2 (ENSBBBG00000012400)
Bos	ANCESTRAL SPECIES	14	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.d ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb.a #23	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Bos_b	ANCESTRAL SPECIES	13	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.n #18	ENSGT00940000154612.m.a.d ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Cow	DUPLICATION
Cow	MODERN SPECIES	8	ENSBTAG00000031693	MAPKAPK5 (ENSBTAG00000009346)	ALDH2 (ENSBTAG00000008743)	BICDL1 (ENSBTAG00000003696) #10	RAB35 (ENSBTAG00000022044) #11	GCN1 (ENSBTAG00000017379) #12	RPLP0 (ENSBTAG00000017389) #13	PXN (ENSBTAG00000018108) #14	SIRT4 (ENSBTAG00000021168) #15	PLA2G1B (ENSBTAG00000026732) #16	MSI1 (ENSBTAG00000009800) #17	COX6A1 (ENSBTAG00000012788) ##18	TRIAP1 (ENSBTAG00000012790)	GATC (ENSBTAG00000012791) #20	SRSF9 (ENSBTAG00000012792) #21	DYNLL1 (ENSBTAG00000024605) #22	COQ5 (ENSBTAG00000015761) #24	RNF10 (ENSBTAG00000015767) #25	POP5 (ENSBTAG00000005385) #26	ENSBTAG00000055032	CABP1 (ENSBTAG00000020049) #27	MLEC (ENSBTAG00000020050) #28	UNC119B (ENSBTAG00000007483) #29	ACADS (ENSBTAG00000007484) #30	SPPL3 (ENSBTAG00000016338) #31	HNF1A (ENSBTAG00000021795) #33	C17H12orf43 (ENSBTAG00000021796) #34	OASL (ENSBTAG00000003297) #35	ENSBTAG00000046887	ENSBTAG00000051177	C12orf76 (ENSBTAG00000032047)
Cow	MODERN SPECIES	25	SEC31A (ENSBTAG00000020525)	SCD5 (ENSBTAG00000022449)	TMEM150C (ENSBTAG00000032588)	ENOPH1 (ENSBTAG00000014805)	HNRNPDL (ENSBTAG00000014804)	HNRNPD (ENSBTAG00000013952)	ENSBTAG00000052070	RASGEF1B (ENSBTAG00000006561)	PRKG2 (ENSBTAG00000002978)	BMP3 (ENSBTAG00000017642)	ENSBTAG00000054713	CFAP299 (ENSBTAG00000035776)	FGF5 (ENSBTAG00000017348)	PRDM8 (ENSBTAG00000020570)	ANTXR2 (ENSBTAG00000014324)	ENSBTAG00000032034 #22	ENSBTAG00000032979 #23	GK2 (ENSBTAG00000039245)	NAA11 (ENSBTAG00000013149)	PAQR3 (ENSBTAG00000008887)	BMP2K (ENSBTAG00000001126)	ANXA3 (ENSBTAG00000010153)	FRAS1 (ENSBTAG00000010716)	MRPL1 (ENSBTAG00000018360)	CNOT6L (ENSBTAG00000049571)	CXCL13 (ENSBTAG00000008479)	ENSBTAG00000048934	CCNG2 (ENSBTAG00000021768)	CCNI (ENSBTAG00000000599)	SEPTIN11 (ENSBTAG00000021372)	SOWAHB (ENSBTAG00000038148)
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	8	ENSBIXG00005027585	ENSBIXG00005027590	MAPKAPK5 (ENSBIXG00005027614)	ALDH2 (ENSBIXG00005027675)	BICDL1 (ENSBIXG00005027728) #10	RAB35 (ENSBIXG00005027772) #11	GCN1 (ENSBIXG00005027905) #12	RPLP0 (ENSBIXG00005028020) #13	PXN (ENSBIXG00005007786) #14	SIRT4 (ENSBIXG00005028207) #15	ENSBIXG00005028230 #16	MSI1 (ENSBIXG00005028333) #17	ENSBIXG00005028363	ENSBIXG00005028388 #18	ENSBIXG00005028429 #21	ENSBIXG00005028470 #22	COQ5 (ENSBIXG00005004904) #24	RNF10 (ENSBIXG00005028528) #25	POP5 (ENSBIXG00005028572) #26	CABP1 (ENSBIXG00005028677) #27	MLEC (ENSBIXG00005028736) #28	UNC119B (ENSBIXG00005028770) #29	ACADS (ENSBIXG00005004992) #30	SPPL3 (ENSBIXG00005005011) #31	HNF1A (ENSBIXG00005006549) #33	C12orf43 (ENSBIXG00005028906) #34	ENSBIXG00005028920	ENSBIXG00005005073 #35	C12orf76 (ENSBIXG00005002181)	ENSBIXG00005028945	ANKRD13A (ENSBIXG00005002115)
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005027356	MSH3 (ENSBIXG00005027416)	RASGRF2 (ENSBIXG00005027490)	CKMT2 (ENSBIXG00005027530)	ZCCHC9 (ENSBIXG00005027597)	ACOT12 (ENSBIXG00005027646)	SSBP2 (ENSBIXG00005027806)	ATG10 (ENSBIXG00005027902)	RPS23 (ENSBIXG00005027957)	ENSBIXG00005007595	ENSBIXG00005028035	XRCC4 (ENSBIXG00005006967)	VCAN (ENSBIXG00005028318)	HAPLN1 (ENSBIXG00005028378)	EDIL3 (ENSBIXG00005028476)	ENSBIXG00005004939 #22	ENSBIXG00005004944 #23	ENSBIXG00005002395	ENSBIXG00005002359	ENSBIXG00005006645	RASA1 (ENSBIXG00005028839)	CCNH (ENSBIXG00005028904)	ENSBIXG00005005066	TMEM161B (ENSBIXG00005028965)	MEF2C (ENSBIXG00005005207)	ENSBIXG00005001676	CETN3 (ENSBIXG00005001585)	MBLAC2 (ENSBIXG00005031285)	ENSBIXG00005031282	LYSMD3 (ENSBIXG00005031273)	ADGRV1 (ENSBIXG00005031266)
Bos_a	DUPLICATION
Bos_a	ANCESTRAL SPECIES	14	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a.d ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb.a #23	ENSGT00390000000378.d.b.fb.b.c.g #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383	ENSGT01090000260322
Domestic yak	MODERN SPECIES	7	ENSBGRG00000026118	MAPKAPK5 (ENSBGRG00000026124)	ALDH2 (ENSBGRG00000026145)	BICDL1 (ENSBGRG00000026169) #10	RAB35 (ENSBGRG00000026176) #11	GCN1 (ENSBGRG00000026191) #12	RPLP0 (ENSBGRG00000026224) #13	PXN (ENSBGRG00000026252) #14	SIRT4 (ENSBGRG00000026294) #15	ENSBGRG00000026299 #16	MSI1 (ENSBGRG00000026314) #17	ENSBGRG00000026336 ##18	TRIAP1 (ENSBGRG00000026341) #19	GATC (ENSBGRG00000026344) #20	SRSF9 (ENSBGRG00000026347) #21	ENSBGRG00000026352 #22	COQ5 (ENSBGRG00000026354) #24	RNF10 (ENSBGRG00000026361) #25	POP5 (ENSBGRG00000026381) #26	ENSBGRG00000026390 #27	MLEC (ENSBGRG00000026401) #28	UNC119B (ENSBGRG00000026410) #29	ACADS (ENSBGRG00000026412) #30	SPPL3 (ENSBGRG00000026421) #31	HNF1A (ENSBGRG00000026430) #33	C12orf43 (ENSBGRG00000026435) #34	ENSBGRG00000026442 #35	C12orf76 (ENSBGRG00000026445)	ANKRD13A (ENSBGRG00000026448)	ENSBGRG00000026453	GIT2 (ENSBGRG00000026463)
Wild yak	MODERN SPECIES	410					GCN1 (ENSBMUG00000020963) #12	RPLP0 (ENSBMUG00000021009) #13	ENSBMUG00000021049 #14	SIRT4 (ENSBMUG00000021078) #15	PLA2G1B (ENSBMUG00000021087) #16	MSI1 (ENSBMUG00000021109) #17	ENSBMUG00000021128 ##18	TRIAP1 (ENSBMUG00000021136) #19	ENSBMUG00000021153 #20	ENSBMUG00000021163 #21	ENSBMUG00000021172 #23	ENSBMUG00000021217 #22	COQ5 (ENSBMUG00000021281) #24	RNF10 (ENSBMUG00000021341) #25	POP5 (ENSBMUG00000021396) #26	ENSBMUG00000021407 #27	ENSBMUG00000021423 #28	ENSBMUG00000021427 #29	ACADS (ENSBMUG00000021446) #30	SPPL3 (ENSBMUG00000021456) #31	HNF1A (ENSBMUG00000021502) #33	C12orf43 (ENSBMUG00000021527) #34	ENSBMUG00000021534 #35	C12orf76 (ENSBMUG00000021546)	ANKRD13A (ENSBMUG00000021557)	ENSBMUG00000021577	GIT2 (ENSBMUG00000021711)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000155190	ENSGT00390000017491.t.t.a.b	ENSGT00940000156301	ENSGT00940000160185	ENSGT00940000154396.b.b	ENSGT00940000156209	ENSGT01030000234573.A.b.a	ENSGT00940000155665.j	ENSGT00990000205383	ENSGT00390000014549.g	ENSGT00530000064198.d	ENSGT00530000064198.c	ENSGT00940000159829	ENSGT00520000055591.a	ENSGT00950000182964.a.a	ENSGT00390000000378.d.b.fb.b.c.h #22	ENSGT00390000001618.cb.b #23	ENSGT00940000164094	ENSGT01100000263497.E.b.e	ENSGT00390000005897	ENSGT00950000182913.B	ENSGT00940000165941	ENSGT00940000161805.p.a.b	ENSGT00950000182976.b.a	ENSGT00940000156262	ENSGT00940000156968	ENSGT00730000110872.b	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.b.b.a.a.b	ENSGT00950000182928.B.d.b	ENSGT00390000000312.u	ENSGT01030000234559.b
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	1076											PWWP3B (ENSBMUG00000019975)	ENSBMUG00000019996	SERPINA7 (ENSBMUG00000020011)	NRK (ENSBMUG00000020046)	IL1RAPL2 (ENSBMUG00000020061)	ENSBMUG00000020070 #22	ENSBMUG00000020082	ENSBMUG00000020107	FAM199X (ENSBMUG00000020114)	ENSBMUG00000020117	SLC25A53 (ENSBMUG00000020127)
Wild yak	MODERN SPECIES	754	DYNLT5 (ENSBMUG00000010909)	INSL5 (ENSBMUG00000010885)	ENSBMUG00000010869	ENSBMUG00000010843	ENSBMUG00000010837	MIER1 (ENSBMUG00000010808)	SLC35D1 (ENSBMUG00000010661)	ENSBMUG00000010632	ENSBMUG00000010602	ENSBMUG00000010583	ENSBMUG00000010567	ENSBMUG00000010553	IL12RB2 (ENSBMUG00000010519)	SERBP1 (ENSBMUG00000010422)	GADD45A (ENSBMUG00000010401)	ENSBMUG00000010367 #22	ENSBMUG00000010359 #23	GNG12 (ENSBMUG00000010353)	WLS (ENSBMUG00000010330)
Domestic yak	MODERN SPECIES	22	SGIP1 (ENSBGRG00000010617)	DYNLT5 (ENSBGRG00000010507)	INSL5 (ENSBGRG00000010455)	DNAI4 (ENSBGRG00000010128)	ENSBGRG00000010112	MIER1 (ENSBGRG00000009812)	SLC35D1 (ENSBGRG00000009631)	ENSBGRG00000009599	ENSBGRG00000009539	ENSBGRG00000009440	ENSBGRG00000009413	ENSBGRG00000009394	IL12RB2 (ENSBGRG00000009248)	SERBP1 (ENSBGRG00000009099)	GADD45A (ENSBGRG00000008972)	ENSBGRG00000008938 #22	ENSBGRG00000008913	ENSBGRG00000008894	DIRAS3 (ENSBGRG00000008874)	WLS (ENSBGRG00000008504)	RPE65 (ENSBGRG00000008339)	ENSBGRG00000008289	DEPDC1 (ENSBGRG00000008047)	ENSBGRG00000008029	LRRC7 (ENSBGRG00000007643)	LRRC40 (ENSBGRG00000007429)	SRSF11 (ENSBGRG00000007267)	ENSBGRG00000007232	ANKRD13C (ENSBGRG00000005513)	CTH (ENSBGRG00000005403)	ENSBGRG00000005391
Caprinae	ANCESTRAL SPECIES	17	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.fb.b.c #22	ENSGT00390000001618.cb.a #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555.i.a #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00950000183087.A.a.a.a.b.b.b.b.a
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	8	MAPKAPK5 (ENSOARG00020020384)	ALDH2 (ENSOARG00020020566)	BICDL1 (ENSOARG00020020670) #10	RAB35 (ENSOARG00020020773) #11	GCN1 (ENSOARG00020020866) #12	RPLP0 (ENSOARG00020021193) #13	PXN (ENSOARG00020021342) #14	ENSOARG00020021816	SIRT4 (ENSOARG00020021864) #15	PLA2G1B (ENSOARG00020021905) #16	MSI1 (ENSOARG00020021980) #17	ENSOARG00020022065 ##18	TRIAP1 (ENSOARG00020022095)	GATC (ENSOARG00020022134) #20	ENSOARG00020022161 #21	ENSOARG00020022194 #22	ENSOARG00020022240 #23	COQ5 (ENSOARG00020022260) #24	RNF10 (ENSOARG00020022324) #25	POP5 (ENSOARG00020022366) #26	CABP1 (ENSOARG00020022431) #27	MLEC (ENSOARG00020022614) #28	UNC119B (ENSOARG00020022639) #29	ACADS (ENSOARG00020022655) #30	SPPL3 (ENSOARG00020022683) #31	HNF1A (ENSOARG00020022728) #33	C12orf43 (ENSOARG00020022838) #34	ENSOARG00020022859 #35	ENSOARG00020022895	C12orf76 (ENSOARG00020022908)	ANKRD13A (ENSOARG00020022934)
Rambouillet Sheep	MODERN SPECIES		PRD-SPRRII (ENSOARG00020008444)	BRDT (ENSOARG00020008525)	EPHX4 (ENSOARG00020009087)	BTBD8 (ENSOARG00020009170)	C1orf146 (ENSOARG00020009293)	GLMN (ENSOARG00020009355)	RPAP2 (ENSOARG00020009451)	EVI5 (ENSOARG00020009564)	DIPK1A (ENSOARG00020010425)	MTF2 (ENSOARG00020010785)	ENSOARG00020011067	TMED5 (ENSOARG00020011102)	CCDC18 (ENSOARG00020011193)	DR1 (ENSOARG00020011400)	ENSOARG00020011450 #23	ENSOARG00020011468 #22	FNBP1L (ENSOARG00020011503)	BCAR3 (ENSOARG00020011724)	DNTTIP2 (ENSOARG00020011971)	GCLM (ENSOARG00020012157)	ABCA4 (ENSOARG00020000200)	ARHGAP29 (ENSOARG00020000343)	ABCD3 (ENSOARG00020000390)	F3 (ENSOARG00020000473)	SLC44A3 (ENSOARG00020000556)	CNN3 (ENSOARG00020001067)	ALG14 (ENSOARG00020001092)	TLCD4 (ENSOARG00020001102)	RWDD3 (ENSOARG00020001116)	PTBP2 (ENSOARG00020001140)	DPYD (ENSOARG00020001219)
Goat	MODERN SPECIES	8	ENSCHIG00000021746	ENSCHIG00000014031	ALDH2 (ENSCHIG00000023248)	BICDL1 (ENSCHIG00000014548) #10	RAB35 (ENSCHIG00000026986) #11	GCN1 (ENSCHIG00000024349) #12	RPLP0 (ENSCHIG00000015368) #13	PXN (ENSCHIG00000010749) #14	SIRT4 (ENSCHIG00000000860) #15	PLA2G1B (ENSCHIG00000010501) #16	MSI1 (ENSCHIG00000024304) #17	ENSCHIG00000026106 ##18	ENSCHIG00000010983	GATC (ENSCHIG00000019423) #20	SRSF9 (ENSCHIG00000025274) #21	ENSCHIG00000019147 #22	ENSCHIG00000018853 #23	COQ5 (ENSCHIG00000019366) #24	RNF10 (ENSCHIG00000026045) #25	POP5 (ENSCHIG00000016402) #26	CABP1 (ENSCHIG00000012286) #27	MLEC (ENSCHIG00000014459) #28	UNC119B (ENSCHIG00000026104) #29	ACADS (ENSCHIG00000012727) #30	SPPL3 (ENSCHIG00000024733) #31	HNF1A (ENSCHIG00000018046) #33	C12orf43 (ENSCHIG00000023049) #34	ENSCHIG00000017422 #35	C12orf76 (ENSCHIG00000025509)	ENSCHIG00000011449	ANKRD13A (ENSCHIG00000021906)
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	1175	ENSMMSG00000016693	MAPKAPK5 (ENSMMSG00000016553)	ALDH2 (ENSMMSG00000014802)	BICDL1 (ENSMMSG00000014745) #10	RAB35 (ENSMMSG00000014719) #11	GCN1 (ENSMMSG00000014575) #12	ENSMMSG00000014387 #13	PXN (ENSMMSG00000014224) #14	SIRT4 (ENSMMSG00000014183) #15	PLA2G1B (ENSMMSG00000014109) #16	MSI1 (ENSMMSG00000014066) #17	COX6A1 (ENSMMSG00000014048) ##18	TRIAP1 (ENSMMSG00000014035) #19	ENSMMSG00000014016 #20	SRSF9 (ENSMMSG00000013991) #21	ENSMMSG00000013964 #22	COQ5 (ENSMMSG00000013926) #24	RNF10 (ENSMMSG00000013817) #25	POP5 (ENSMMSG00000013781) #26	CABP1 (ENSMMSG00000013673) #27	MLEC (ENSMMSG00000013635) #28	ENSMMSG00000013608 #29	ACADS (ENSMMSG00000013595) #30	ENSMMSG00000013578	ENSMMSG00000013561	SPPL3 (ENSMMSG00000013539) #31	HNF1A (ENSMMSG00000013459) #33	C12orf43 (ENSMMSG00000013415) #34	C12orf76 (ENSMMSG00000013399)	ENSMMSG00000013391	ANKRD13A (ENSMMSG00000013361)
Siberian musk deer	MODERN SPECIES	1277	ALPK3 (ENSMMSG00000023207)	SLC28A1 (ENSMMSG00000023159)	PDE8A (ENSMMSG00000023116)	ENSMMSG00000023100	CPEB1 (ENSMMSG00000023031)	AP3B2 (ENSMMSG00000022759)	ENSMMSG00000022686	FSD2 (ENSMMSG00000022666)	WHAMM (ENSMMSG00000022641)	HOMER2 (ENSMMSG00000022623)	ENSMMSG00000022608	C15orf40 (ENSMMSG00000022590)	ENSMMSG00000022577	ENSMMSG00000022569	MEX3B (ENSMMSG00000022560)	ENSMMSG00000022552 #22	EFL1 (ENSMMSG00000022505)	ENSMMSG00000022493	SAXO2 (ENSMMSG00000022484)	ADAMTSL3 (ENSMMSG00000022467)	SH3GL3 (ENSMMSG00000022448)	ENSMMSG00000022431	HDGFL3 (ENSMMSG00000022420)	TM6SF1 (ENSMMSG00000022373)	ENSMMSG00000022350	BTBD1 (ENSMMSG00000022328)	ENSMMSG00000022320	ENSMMSG00000022142	CTSH (ENSMMSG00000022021)	RASGRF1 (ENSMMSG00000021865)	ANKRD34C (ENSMMSG00000021838)
Yarkand deer	MODERN SPECIES	28	TMEM116 (ENSCHYG00000003710)	ENSCHYG00000003680	MAPKAPK5 (ENSCHYG00000003619)	ALDH2 (ENSCHYG00000003523)	BICDL1 (ENSCHYG00000003470) #10	RAB35 (ENSCHYG00000003441) #11	GCN1 (ENSCHYG00000003222) #12	ENSCHYG00000003150 ##13	PXN (ENSCHYG00000003049) #14	SIRT4 (ENSCHYG00000003002) #15	PLA2G1B (ENSCHYG00000002985) #16	MSI1 (ENSCHYG00000002954) #17	ENSCHYG00000002940	ENSCHYG00000002908 #18	SRSF9 (ENSCHYG00000002881) #21	ENSCHYG00000002861 #22	COQ5 (ENSCHYG00000002831) #24	RNF10 (ENSCHYG00000002709) #25	POP5 (ENSCHYG00000002661) #26	ENSCHYG00000002647	ENSCHYG00000002614 #27	MLEC (ENSCHYG00000002591) #28	UNC119B (ENSCHYG00000002573) #29	ACADS (ENSCHYG00000002549) #30	SPPL3 (ENSCHYG00000002518) #31	HNF1A (ENSCHYG00000002459) #33	C12orf43 (ENSCHYG00000002408) #34	OASL (ENSCHYG00000002386) #35	ENSCHYG00000002369	C12orf76 (ENSCHYG00000002355)	ENSCHYG00000002340
Pecora	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Yarkand deer	MODERN SPECIES	1323	ENSCHYG00000012187	AR (ENSCHYG00000012242)	ENSCHYG00000012623	ENSCHYG00000012635	ENSCHYG00000012671	EDA2R (ENSCHYG00000012702)	CHST7 (ENSCHYG00000012799)	SLC9A7 (ENSCHYG00000012816)	ENSCHYG00000012899	RP2 (ENSCHYG00000012920)	JADE3 (ENSCHYG00000012941)	RGN (ENSCHYG00000012997)	ENSCHYG00000013120	NDUFB11 (ENSCHYG00000013137)	RBM10 (ENSCHYG00000013228)	ENSCHYG00000013676 #22	UBA1 (ENSCHYG00000013713)	ENSCHYG00000014283	ENSCHYG00000014787	ZNF157 (ENSCHYG00000015268)	ZNF41 (ENSCHYG00000015348)	ARAF (ENSCHYG00000015467)	SYN1 (ENSCHYG00000015682)	TIMP1 (ENSCHYG00000015815)	CFP (ENSCHYG00000015864)	ELK1 (ENSCHYG00000016063)	ENSCHYG00000016212	ENSCHYG00000016354	MAGED1 (ENSCHYG00000016520)	GSPT2 (ENSCHYG00000016695)	ENSCHYG00000016717
Percora_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Bovidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
American bison	MODERN SPECIES	2339																ENSBBBG00000023886 #22
Bos	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Cow	MODERN SPECIES	177	FRMPD3 (ENSBTAG00000003121)	DNAAF6 (ENSBTAG00000003321)	RBM41 (ENSBTAG00000000955)	ENSBTAG00000045876	CLDN2 (ENSBTAG00000055282)	ENSBTAG00000005294	RIPPLY1 (ENSBTAG00000044115)	TBC1D8B (ENSBTAG00000046314)	RNF128 (ENSBTAG00000022920)	RADX (ENSBTAG00000003668)	PWWP3B (ENSBTAG00000040132)	ENSBTAG00000053716	SERPINA7 (ENSBTAG00000047655)	NRK (ENSBTAG00000004836)	IL1RAPL2 (ENSBTAG00000044025)	ENSBTAG00000045756 #22	ENSBTAG00000009457	ENSBTAG00000053380	ESX1 (ENSBTAG00000005953)	FAM199X (ENSBTAG00000004008)	SLC25A53 (ENSBTAG00000054469)	ENSBTAG00000046436	ENSBTAG00000014287	ENSBTAG00000052155	ENSBTAG00000047211	RAB9B (ENSBTAG00000019820)	PLP1 (ENSBTAG00000006977)	GLRA4 (ENSBTAG00000003320)	MORF4L2 (ENSBTAG00000001311)	TCEAL1 (ENSBTAG00000049730)	ENSBTAG00000022204
Caprinae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.fb.b.d #22
Rambouillet Sheep	MODERN SPECIES	13	PICALM (ENSOARG00020013638)	ENSOARG00020014330	ENSOARG00020014438	SYTL2 (ENSOARG00020014519)	CCDC89 (ENSOARG00020015557)	CREBZF (ENSOARG00020015588)	TMEM126A (ENSOARG00020015625)	TMEM126B (ENSOARG00020015676)	DLG2 (ENSOARG00020016002)	ENSOARG00020024175	ENSOARG00020024191	ENSOARG00020024223	ENSOARG00020024238	CCDC90B (ENSOARG00020024361)	PCF11 (ENSOARG00020024415)	ENSOARG00020024522 #22	RAB30 (ENSOARG00020024533)	PRCP (ENSOARG00020024590)	ENSOARG00020024670	FAM181B (ENSOARG00020024679)	TENM4 (ENSOARG00020024798)	NARS2 (ENSOARG00020025086)	GAB2 (ENSOARG00020025127)	ENSOARG00020025150	USP35 (ENSOARG00020025158)	KCTD21 (ENSOARG00020025178)	ENSOARG00020025186	ENSOARG00020025198	ALG8 (ENSOARG00020025204)	NDUFC2 (ENSOARG00020025217)	THRSP (ENSOARG00020025234)
Siberian musk deer	MODERN SPECIES	258							DACT1 (ENSMMSG00000008105)	KIAA0586 (ENSMMSG00000007552)	TIMM9 (ENSMMSG00000007476)	TOMM20L (ENSMMSG00000007451)	ARID4A (ENSMMSG00000007258)	PSMA3 (ENSMMSG00000007088)	ACTR10 (ENSMMSG00000007044)	ARMH4 (ENSMMSG00000007016)	ENSMMSG00000007001	ENSMMSG00000006982 #22	SLC35F4 (ENSMMSG00000006922)	ENSMMSG00000006892	NAA30 (ENSMMSG00000006855)	AP5M1 (ENSMMSG00000006814)	ENSMMSG00000006789	ENSMMSG00000006587	ENSMMSG00000006537	ENSMMSG00000006506
Camelidae	ANCESTRAL SPECIES	161																ENSGT00390000000378.d.b.fb.b #22	ENSGT00390000001618.db #23
Arabian camel	MODERN SPECIES	11	ENSCDRG00005009873	GRID2 (ENSCDRG00005009950)	ENSCDRG00005010381	CCSER1 (ENSCDRG00005010415)	MMRN1 (ENSCDRG00005010505)	ENSCDRG00005010544	ENSCDRG00005010708	ENSCDRG00005010793	POLR2B (ENSCDRG00005010929)	IGFBP7 (ENSCDRG00005011222)	ENSCDRG00005011298	ADGRL3 (ENSCDRG00005011461)	ENSCDRG00005016248	TECRL (ENSCDRG00005016258)	EPHA5 (ENSCDRG00005016353)	ENSCDRG00005016777 #22	ENSCDRG00005016828 #23	CENPC (ENSCDRG00005016837)	STAP1 (ENSCDRG00005016912)	UBA6 (ENSCDRG00005016966)	GNRHR (ENSCDRG00005017041)	ENSCDRG00005017088	TMPRSS11D (ENSCDRG00005017168)	TMPRSS11A (ENSCDRG00005017245)	ENSCDRG00005017298	TMPRSS11F (ENSCDRG00005017352)	ENSCDRG00005017437	TMPRSS11B (ENSCDRG00005017546)	TMPRSS11E (ENSCDRG00005017583)	YTHDC1 (ENSCDRG00005017652)	ENSCDRG00005017897
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00390000017839.o.a #13	ENSGT00940000158897 #14	ENSGT00940000170510	ENSGT00940000166687	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000000378.d.b.fb.b #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a #22	ENSGT00390000000378.d.b.gb #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00950000185577	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00530000065303	ENSGT00950000182928.A.b	ENSGT00940000156383
Camelidae	ANCESTRAL SPECIES	81	ENSGT00940000160605	ENSGT00390000015428	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.m.a ##18	ENSGT00940000162087 #19	ENSGT00390000000378.d.b.gb #22	ENSGT00940000163530	ENSGT00940000156839 #21	ENSGT00390000001618.cb #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35
Alpaca	MODERN SPECIES	1937											PLA2G1B (ENSVPAG00000010357) #16	ENSVPAG00000010358 #17	COX6A1 (ENSVPAG00000010359) ##18	ENSVPAG00000010360	SRSF9 (ENSVPAG00000010361) #21	DYNLL1 (ENSVPAG00000010362) #22	COQ5 (ENSVPAG00000010363) #24	RNF10 (ENSVPAG00000010364) #25	POP5 (ENSVPAG00000010365) #26
Arabian camel	MODERN SPECIES	25	HSPB8 (ENSCDRG00005017156)	CCDC60 (ENSCDRG00005017185)	TMEM233 (ENSCDRG00005017345)	PRKAB1 (ENSCDRG00005017280)	CIT (ENSCDRG00005017393) #9	BICDL1 (ENSCDRG00005017532) #10	RAB35 (ENSCDRG00005017672) #11	GCN1 (ENSCDRG00005017762) #12	ENSCDRG00005017865 ##13	PXN (ENSCDRG00005017984) #14	SIRT4 (ENSCDRG00005018239) #15	PLA2G1B (ENSCDRG00005018265) #16	MSI1 (ENSCDRG00005018349) #17	ENSCDRG00005018462 ##18	TRIAP1 (ENSCDRG00005018489) #19	GATC (ENSCDRG00005018512) #22	SRSF9 (ENSCDRG00005018565) #21	ENSCDRG00005018600 #23	COQ5 (ENSCDRG00005018628) #24	RNF10 (ENSCDRG00005018670) #25	POP5 (ENSCDRG00005018863) #26	ENSCDRG00005018935 #27	UNC119B (ENSCDRG00005019110) #29	ACADS (ENSCDRG00005019139) #30	SPPL3 (ENSCDRG00005019194) #31	HNF1A (ENSCDRG00005019223) #33	C12orf43 (ENSCDRG00005019275) #34	OASL (ENSCDRG00005019293) #35	OAS1 (ENSCDRG00005019323) ##35	RPH3A (ENSCDRG00005019408)	ENSCDRG00005019652
Artiodactyla_b	ANCESTRAL SPECIES	57																ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Cetacea	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb #22
Odontoceti	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb #22
Odontoceti_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb #22
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000001927.a	ENSGT00940000157251.hb	ENSGT00940000157813	ENSGT00390000017491.t.u.r	ENSGT00940000155817.a.a	ENSGT00390000000687	ENSGT00940000156433.B	ENSGT00390000001511	ENSGT00940000167380	ENSGT00940000167952	ENSGT00940000156267.eb	ENSGT00940000156267.db.a	ENSGT00940000166205.a.e	ENSGT00940000156267.db.b	ENSGT00940000158305	ENSGT00390000000378.d.b.gb #22	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00940000159336	ENSGT00550000074855	ENSGT00390000005270	ENSGT00940000155328.cb	ENSGT00940000154910.b.b	ENSGT00390000006367.d	ENSGT00950000182922.a.a.a.b.a.b.a.b.a	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l.a	ENSGT00950000183194.a.b	ENSGT00940000158780
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00390000001927.a	ENSGT00940000157251.hb	ENSGT00940000157813	ENSGT00390000017491.t.u.r	ENSGT00940000155817.a.a	ENSGT00390000000687	ENSGT00940000156433.B	ENSGT00390000018086.y.b.b	ENSGT00390000001511	ENSGT00940000167380	ENSGT00940000166205.b	ENSGT00940000167952	ENSGT00940000166205.a.e	ENSGT00940000156267.db.b	ENSGT00940000158305	ENSGT00390000000378.d.b.gb #22	ENSGT00940000153169.A.b.b.a.a.a.b.l	ENSGT00940000159336	ENSGT00550000074855	ENSGT00390000005270	ENSGT00940000155328.cb	ENSGT00940000154910.b.b	ENSGT00390000006367.d	ENSGT00950000182922.a.a.a.b.a.b.a.b.a	ENSGT00390000018603	ENSGT00390000007975.a	ENSGT00940000157523	ENSGT00950000182839.A.d	ENSGT00950000182956.b.b.a.a.c.a.l.a	ENSGT00950000183194.a.b	ENSGT00940000158780
Narwhal	MODERN SPECIES	314	NUCB2 (ENSMMNG00015021400)	ENSMMNG00015021368	PIK3C2A (ENSMMNG00015021358)	RPS13 (ENSMMNG00015021335)	PLEKHA7 (ENSMMNG00015021305)	C11orf58 (ENSMMNG00015021280)	SOX6 (ENSMMNG00015021242)	ENSMMNG00015021215	INSC (ENSMMNG00015021164)	ENSMMNG00015021136	ENSMMNG00015021124	ENSMMNG00015021119	ENSMMNG00015021104	ENSMMNG00015021083	CYP2R1 (ENSMMNG00015021059)	ENSMMNG00015021043 #22	ENSMMNG00015021034	PDE3B (ENSMMNG00015020953)	PSMA1 (ENSMMNG00015020868)	COPB1 (ENSMMNG00015020824)	ENSMMNG00015020802	SPON1 (ENSMMNG00015020782)	FAR1 (ENSMMNG00015020761)	ENSMMNG00015020752	PTH (ENSMMNG00015020742)	BTBD10 (ENSMMNG00015020698)	BMAL1 (ENSMMNG00015020613)	RASSF10 (ENSMMNG00015020589)	TEAD1 (ENSMMNG00015020545)	PARVA (ENSMMNG00015020501)	MICAL2 (ENSMMNG00015020388)
Vaquita	MODERN SPECIES	19	ABCC8 (ENSPSNG00000007231)	KCNJ11 (ENSPSNG00000006886)	ENSPSNG00000006848	NUCB2 (ENSPSNG00000006795)	ENSPSNG00000006740	PIK3C2A (ENSPSNG00000006633)	PLEKHA7 (ENSPSNG00000006504)	C11orf58 (ENSPSNG00000006414)	SOX6 (ENSPSNG00000006212)	INSC (ENSPSNG00000005971)	ENSPSNG00000005882	ENSPSNG00000005847	ENSPSNG00000005826	ENSPSNG00000005789	CYP2R1 (ENSPSNG00000005748)	ENSPSNG00000005725 #22	ENSPSNG00000005706	PDE3B (ENSPSNG00000005620)	PSMA1 (ENSPSNG00000005548)	COPB1 (ENSPSNG00000005475)	ENSPSNG00000005427	SPON1 (ENSPSNG00000005398)	FAR1 (ENSPSNG00000005352)	ENSPSNG00000005319	PTH (ENSPSNG00000005298)	BTBD10 (ENSPSNG00000005248)	BMAL1 (ENSPSNG00000005165)	RASSF10 (ENSPSNG00000005115)	ENSPSNG00000005077	PARVA (ENSPSNG00000005015)	MICAL2 (ENSPSNG00000004843)
Sperm whale	MODERN SPECIES	19	ENSPCTG00005003348	RETREG1 (ENSPCTG00005003333)	ENSPCTG00005003316	ENSPCTG00005003299	ENSPCTG00005003297	MARCH11 (ENSPCTG00005003284)	FBXL7 (ENSPCTG00005003269)	ENSPCTG00005003250	ANKH (ENSPCTG00005003239)	ENSPCTG00005003233	OTULIN (ENSPCTG00005003221)	OTULINL (ENSPCTG00005003212)	TRIO (ENSPCTG00005003109)	DNAH5 (ENSPCTG00005003015)	ENSPCTG00005002988	ENSPCTG00005002979 #22	ENSPCTG00005002965	CTNND2 (ENSPCTG00005002822)	DAP (ENSPCTG00005002789)	ANKRD33B (ENSPCTG00005002770)	ROPN1L (ENSPCTG00005002753)	ENSPCTG00005002747	MARCH6 (ENSPCTG00005002477)	CMBL (ENSPCTG00005002401)	CCT5 (ENSPCTG00005002365)	ATPSCKMT (ENSPCTG00005002344)	SEMA5A (ENSPCTG00005002330)	MTRR (ENSPCTG00005002314)	FASTKD3 (ENSPCTG00005002301)	CFAP90 (ENSPCTG00005002289)	ADCY2 (ENSPCTG00005002147)
Pecora	ANCESTRAL SPECIES	67																ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Percora_a	ANCESTRAL SPECIES	68																ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	8								FAM133A (ENSMMSG00000008570)	ENSMMSG00000008552	ENSMMSG00000008511	ENSMMSG00000008443	ENSMMSG00000008384	DIAPH2 (ENSMMSG00000008282)	ENSMMSG00000008253	ENSMMSG00000008230	ENSMMSG00000008218 #22	ENSMMSG00000008202 #23	PCDH19 (ENSMMSG00000008079)	ENSMMSG00000008060	TNMD (ENSMMSG00000008036)	TSPAN6 (ENSMMSG00000007947)	SRPX2 (ENSMMSG00000007899)	ENSMMSG00000007890
Siberian musk deer	MODERN SPECIES	346	PLA2R1 (ENSMMSG00000024062)	ITGB6 (ENSMMSG00000023980)	ENSMMSG00000023960 #22	ENSMMSG00000023953	ENSMMSG00000023951	TANK (ENSMMSG00000023948)	PSMD14 (ENSMMSG00000023944)	TBR1 (ENSMMSG00000023939)	ENSMMSG00000023934	SLC4A10 (ENSMMSG00000023858)	DPP4 (ENSMMSG00000023825)	GCG (ENSMMSG00000023816)	FAP (ENSMMSG00000023776)	IFIH1 (ENSMMSG00000023754)	GCA (ENSMMSG00000023742)	ENSMMSG00000023738 #22	KCNH7 (ENSMMSG00000023675)	ENSMMSG00000023658	GRB14 (ENSMMSG00000023643)	COBLL1 (ENSMMSG00000023622)	SLC38A11 (ENSMMSG00000023593)	SCN3A (ENSMMSG00000023114)	SCN2A (ENSMMSG00000023010)	CSRNP3 (ENSMMSG00000022981)	GALNT3 (ENSMMSG00000022964)	TTC21B (ENSMMSG00000022918)	SCN1A (ENSMMSG00000021114)	SCN9A (ENSMMSG00000019213)	SCN7A (ENSMMSG00000018383)	ENSMMSG00000018334	XIRP2 (ENSMMSG00000018137)
Bovidae	ANCESTRAL SPECIES	34																ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22	ENSGT00940000162668	ENSGT00940000163888	ENSGT00940000158335	ENSGT00530000065541	ENSGT00940000157822	ENSGT00940000164266	ENSGT00940000159162	ENSGT00480000042679.a	ENSGT00940000159092.d	ENSGT00940000159149	ENSGT00940000153412.A.a.d	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990
Caprinae	ANCESTRAL SPECIES	38											ENSGT00940000162668	ENSGT00940000158335	ENSGT00390000012807.cb.b	ENSGT00940000154837.f.b	ENSGT00940000157822	ENSGT00390000000378.d.b.gb #22	ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.fb.a.a #22	ENSGT00940000159162	ENSGT00480000042679.a	ENSGT00940000159092.d	ENSGT00940000159149	ENSGT00940000153412.A.a.d.c	ENSGT00390000007539.i.b.b.i	ENSGT00940000161990	ENSGT00940000162726	ENSGT00940000163081	ENSGT00940000160792	ENSGT01030000234531.A.a	ENSGT00390000007539.i.b.a	ENSGT00940000153412.B
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020020016	ENSOARG00020019902	ENSOARG00020019580	FAM133A (ENSOARG00020019478)	ENSOARG00020019414	ENSOARG00020019388	ENSOARG00020019268	DIAPH2 (ENSOARG00020019118)	ENSOARG00020019085	ENSOARG00020019044	ENSOARG00020018987	ENSOARG00020018865	ENSOARG00020018799	ENSOARG00020018749	ENSOARG00020018729	ENSOARG00020018701 #22	ENSOARG00020018677 #23	PCDH19 (ENSOARG00020018564)	TNMD (ENSOARG00020018483)	TSPAN6 (ENSOARG00020018379)	SRPX2 (ENSOARG00020018342)	ENSOARG00020018301	ENSOARG00020018265	ENSOARG00020018170	GPRASP2 (ENSOARG00020018160)	ARMCX5 (ENSOARG00020018139)	ENSOARG00020018059	ENSOARG00020018010	BEX5 (ENSOARG00020017985)	ENSOARG00020017953	ARMCX2 (ENSOARG00020017486)
Goat	MODERN SPECIES	30		FAM133A (ENSCHIG00000020066)	NAP1L3 (ENSCHIG00000020503)	ENSCHIG00000018022	ENSCHIG00000015524	ENSCHIG00000012934	ENSCHIG00000008332	ENSCHIG00000009197	ENSCHIG00000000445	ENSCHIG00000000411	ENSCHIG00000000375	ENSCHIG00000000344	ENSCHIG00000000308	ENSCHIG00000000275	ENSCHIG00000000236	ENSCHIG00000018890 #22	TNMD (ENSCHIG00000000164)	SRPX2 (ENSCHIG00000000098)	ENSCHIG00000000063	ENSCHIG00000008561	ENSCHIG00000020751	ENSCHIG00000008681	GPRASP2 (ENSCHIG00000006797)	ARMCX5 (ENSCHIG00000016190)	ENSCHIG00000011905	ENSCHIG00000023015	ENSCHIG00000019200	BEX5 (ENSCHIG00000006080)	ZMAT1 (ENSCHIG00000010507)	ARMCX2 (ENSCHIG00000005763)	ARMCX3 (ENSCHIG00000003482)
Bovinae	ANCESTRAL SPECIES	116															ENSGT00390000001618.db #23	ENSGT00390000000378.d.b.gb #22
Bos	DUPLICATION
Bos	DUPLICATION
Bos	ANCESTRAL SPECIES	13	ENSGT00940000162699	ENSGT00940000153766.B	ENSGT00940000160101	ENSGT00940000161137	ENSGT00940000157938	ENSGT00940000157875	ENSGT00940000157542	ENSGT00940000160441	ENSGT00940000157091	ENSGT00940000157722	ENSGT00950000182838.C	ENSGT00390000003488.a.a	ENSGT00840000129915.j	ENSGT00940000158020	ENSGT00390000000096.b.a	ENSGT00390000000378.d.b.gb.c.a #22	ENSGT00390000005488	ENSGT00940000160054	ENSGT00940000160631	ENSGT00940000158280	ENSGT00390000018141.i.a.b.b.b.a.b.b.b.b.a	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971.m.a	ENSGT00940000155347.a.b	ENSGT00940000154555.a.b.b.b	ENSGT00940000157573	ENSGT00950000183103.c	ENSGT00940000160298
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000162699	ENSGT00940000153766.B	ENSGT00940000160101	ENSGT00940000161137	ENSGT00940000157938	ENSGT00940000157875	ENSGT00940000157542	ENSGT00940000160441	ENSGT00940000157091	ENSGT00940000157722	ENSGT00950000182838.C	ENSGT00390000003488.a.a	ENSGT00840000129915.j	ENSGT00940000158020	ENSGT00390000000096.b.a	ENSGT00390000000378.d.b.gb.c.a #22	ENSGT00390000005488	ENSGT00940000160054	ENSGT00940000160631	ENSGT00940000158280	ENSGT00390000018141.i.a.b.b.b.a.b.b.b.b.a	ENSGT00550000074952	ENSGT00940000154351	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971.n	ENSGT00940000157971.m.a	ENSGT00940000155347.a.b	ENSGT00940000154555.a.b.b.b	ENSGT00940000157573	ENSGT00950000183103.c
Wild yak	MODERN SPECIES	1176							USP50 (ENSBMUG00000010870)	ENSBMUG00000010862	TRPM7 (ENSBMUG00000010823)	SPPL2A (ENSBMUG00000010751)	AP4E1 (ENSBMUG00000010697)	TNFAIP8L3 (ENSBMUG00000010626)	CYP19A1 (ENSBMUG00000010546)	GLDN (ENSBMUG00000010526)	DMXL2 (ENSBMUG00000010452)	ENSBMUG00000010348 #22	SCG3 (ENSBMUG00000010332)	LYSMD2 (ENSBMUG00000010294)	TMOD2 (ENSBMUG00000010278)	TMOD3 (ENSBMUG00000010230)	LEO1 (ENSBMUG00000010199)	MAPK6 (ENSBMUG00000010171)	BCL2L10 (ENSBMUG00000010134)	GNB5 (ENSBMUG00000010128)	ENSBMUG00000010111
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000162699	ENSGT00940000153766.B	ENSGT00940000160101	ENSGT00940000161137	ENSGT00940000157938	ENSGT00940000157875	ENSGT00940000157542	ENSGT00940000160441	ENSGT00940000157091	ENSGT00940000157722	ENSGT00950000182838.C	ENSGT00390000003488.a.a	ENSGT00840000129915.j	ENSGT00940000158020	ENSGT00390000000096.b.a	ENSGT00390000000378.d.b.gb.c.a #22	ENSGT00390000005488	ENSGT00940000160054	ENSGT00940000160631	ENSGT00940000158280	ENSGT00390000018141.i.a.b.b.b.a.b.b.b.b.a	ENSGT00550000074952	ENSGT00940000154351	ENSGT00940000164610	ENSGT01090000260003.a.b.b.a.a.a.b.a	ENSGT01000000214413.a	ENSGT00940000157971.m.a	ENSGT00940000155347.a.b	ENSGT00940000154555.a.b.b.b	ENSGT00940000157573	ENSGT00950000183103.c
Cow	MODERN SPECIES	1	ATP8B4 (ENSBTAG00000011936)	SLC27A2 (ENSBTAG00000004303)	HDC (ENSBTAG00000009911)	ENSBTAG00000054826	GABPB1 (ENSBTAG00000022801)	USP50 (ENSBTAG00000011929)	ENSBTAG00000052971	USP8 (ENSBTAG00000011916)	TRPM7 (ENSBTAG00000031165)	SPPL2A (ENSBTAG00000011831)	AP4E1 (ENSBTAG00000013616)	TNFAIP8L3 (ENSBTAG00000010472)	CYP19A1 (ENSBTAG00000014890)	GLDN (ENSBTAG00000002576)	DMXL2 (ENSBTAG00000000737)	ENSBTAG00000050593 #22	SCG3 (ENSBTAG00000017677)	LYSMD2 (ENSBTAG00000017683)	TMOD2 (ENSBTAG00000014011)	TMOD3 (ENSBTAG00000048622)	ENSBTAG00000051260	LEO1 (ENSBTAG00000013830)	MAPK6 (ENSBTAG00000005865)	ENSBTAG00000005429	GNB5 (ENSBTAG00000003762)	MYO5C (ENSBTAG00000003763)	MYO5A (ENSBTAG00000006489)	ARPP19 (ENSBTAG00000011022)	ATOSA (ENSBTAG00000024958)	ONECUT1 (ENSBTAG00000046470)	WDR72 (ENSBTAG00000021876)
Bos	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb.c.b #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb.c.b #22
Cow	MODERN SPECIES	12	NAIP (ENSBTAG00000003326)	ENSBTAG00000051768	GTF2H2 (ENSBTAG00000027983)	OCLN (ENSBTAG00000000561)	MARVELD2 (ENSBTAG00000040001)	RAD17 (ENSBTAG00000002073)	AK6 (ENSBTAG00000046192)	TAF9 (ENSBTAG00000027980)	CCDC125 (ENSBTAG00000017011)	CDK7 (ENSBTAG00000011046)	MRPS36 (ENSBTAG00000011045)	CENPH (ENSBTAG00000014246)	CCNB1 (ENSBTAG00000014239)	SLC30A5 (ENSBTAG00000001013)	PIK3R1 (ENSBTAG00000010989)	ENSBTAG00000034170 #22	ENSBTAG00000055154	CD180 (ENSBTAG00000006360)	MAST4 (ENSBTAG00000025964)	ENSBTAG00000049964	ENSBTAG00000053341	SREK1 (ENSBTAG00000007321)	ERBIN (ENSBTAG00000000415)	NLN (ENSBTAG00000016903)	SGTB (ENSBTAG00000016902)	TRAPPC13 (ENSBTAG00000016900)	SHLD3 (ENSBTAG00000047828)	TRIM23 (ENSBTAG00000009519)	PPWD1 (ENSBTAG00000009514)	CENPK (ENSBTAG00000044175)	ADAMTS6 (ENSBTAG00000016963)
Bos	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb.d #22
Bos_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.gb.d #22
Hybrid Bos Indicus	MODERN SPECIES	25	ENSBIXG00005021130	ENSBIXG00005003572	SCD5 (ENSBIXG00005003574)	ENSBIXG00005021178	TMEM150C (ENSBIXG00005003590)	ENOPH1 (ENSBIXG00005021273)	HNRNPDL (ENSBIXG00005021441)	ENSBIXG00005003631	RASGEF1B (ENSBIXG00005021796)	PRKG2 (ENSBIXG00005021890)	BMP3 (ENSBIXG00005021925)	CFAP299 (ENSBIXG00005021935)	FGF5 (ENSBIXG00005003711)	PRDM8 (ENSBIXG00005022026)	ANTXR2 (ENSBIXG00005002605)	ENSBIXG00005003758 #22	GK2 (ENSBIXG00005022137)	NAA11 (ENSBIXG00005022145)	PAQR3 (ENSBIXG00005022171)	ENSBIXG00005022181	BMP2K (ENSBIXG00005022256)	ANXA3 (ENSBIXG00005022397)	FRAS1 (ENSBIXG00005022695)	ENSBIXG00005022747	ENSBIXG00005005754	CNOT6L (ENSBIXG00005022921)	ENSBIXG00005003924	ENSBIXG00005023018	ENSBIXG00005023046	CCNG2 (ENSBIXG00005007172)	CCNI (ENSBIXG00005023180)
American bison	MODERN SPECIES	3312	PLA2R1 (ENSBBBG00000014279)	ITGB6 (ENSBBBG00000014399)	ENSBBBG00000008288 #22	RBMS1 (ENSBBBG00000003334)	TANK (ENSBBBG00000003352)	PSMD14 (ENSBBBG00000003364)	TBR1 (ENSBBBG00000014500)	ENSBBBG00000014504	SLC4A10 (ENSBBBG00000014578)	DPP4 (ENSBBBG00000007218)	GCG (ENSBBBG00000003533)	FAP (ENSBBBG00000014785)	IFIH1 (ENSBBBG00000014857)	GCA (ENSBBBG00000014884)	ENSBBBG00000014889 #23	ENSBBBG00000002806 #22	KCNH7 (ENSBBBG00000001182)	FIGN (ENSBBBG00000001161)	ENSBBBG00000001155	GRB14 (ENSBBBG00000001125)	COBLL1 (ENSBBBG00000001053)	SLC38A11 (ENSBBBG00000000924)	ENSBBBG00000000911	SCN3A (ENSBBBG00000016080)	SCN2A (ENSBBBG00000016486)	CSRNP3 (ENSBBBG00000016537)	GALNT3 (ENSBBBG00000004083)	TTC21B (ENSBBBG00000004091)	SCN1A (ENSBBBG00000007263)	SCN9A (ENSBBBG00000017678)	ENSBBBG00000017710
Eulipotyphla	ANCESTRAL SPECIES	2388															ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	12538																ENSEEUG00000011927 #22
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	11463															ENSEEUG00000012588 #23	ENSEEUG00000012634 #22
Hedgehog	MODERN SPECIES	13020																ENSEEUG00000011216 #22
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	7425																ENSSARG00000010937 #22
Common shrew	MODERN SPECIES	7426																ENSSARG00000002335 #22
Atlantogenata	ANCESTRAL SPECIES	28	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873
Xenarthra	ANCESTRAL SPECIES	41	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000170510	ENSGT00390000017839.o.b.b.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a ##35
Armadillo	MODERN SPECIES	2156	ENSDNOG00000046924	ENSDNOG00000031711	BICDL1 (ENSDNOG00000044681) #10	RAB35 (ENSDNOG00000012013) #11	GCN1 (ENSDNOG00000011771) #12	ENSDNOG00000044347 ##13	PXN (ENSDNOG00000045456) #14	SIRT4 (ENSDNOG00000038654) #15	PLA2G1B (ENSDNOG00000046317) #16	MSI1 (ENSDNOG00000005713) #17	ENSDNOG00000040794	COX6A1 (ENSDNOG00000042128) #18	TRIAP1 (ENSDNOG00000012588) #19	GATC (ENSDNOG00000012593) #20	SRSF9 (ENSDNOG00000012598) #21	DYNLL1 (ENSDNOG00000031391) #22	COQ5 (ENSDNOG00000012631) #24	RNF10 (ENSDNOG00000012640) #25	ENSDNOG00000012668 #26	ENSDNOG00000042834 #27	MLEC (ENSDNOG00000011615) #28	UNC119B (ENSDNOG00000039143) #29	ACADS (ENSDNOG00000030594) #30	ENSDNOG00000038333	SPPL3 (ENSDNOG00000016589) #31	HNF1A (ENSDNOG00000000374) #33	ENSDNOG00000000382 #34	OASL (ENSDNOG00000035785) #35	ENSDNOG00000048828 ##35
Sloth	DUPLICATION
Sloth	MODERN SPECIES	45																ENSCHOG00000007175 #22	COQ5 (ENSCHOG00000007184) #24
Sloth	MODERN SPECIES	10526																ENSCHOG00000000460 #22
Afrotheria	ANCESTRAL SPECIES	61	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.o.b.a.b ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00940000159434	ENSGT01020000230438.C	ENSGT00390000008873	ENSGT00900000141107
Tenrec	DUPLICATION
Tenrec	MODERN SPECIES	6024															ENSETEG00000009268 #23	ENSETEG00000009270 #22	COQ5 (ENSETEG00000009271) #24	RNF10 (ENSETEG00000009277) #25	POP5 (ENSETEG00000009283) #26
Tenrec	MODERN SPECIES	14699																ENSETEG00000011676 #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b #22
Elephant	MODERN SPECIES	278	TXNDC9 (ENSLAFG00000006204)	EIF5B (ENSLAFG00000006209)	REV1 (ENSLAFG00000006217)	AFF3 (ENSLAFG00000012884)	ENSLAFG00000026678	LONRF2 (ENSLAFG00000005456)	CHST10 (ENSLAFG00000005461)	NMS (ENSLAFG00000029888)	PDCL3 (ENSLAFG00000021615)	ENSLAFG00000026504	NPAS2 (ENSLAFG00000016336)	ENSLAFG00000027873	TBC1D8 (ENSLAFG00000016341)	CNOT11 (ENSLAFG00000006411)	RNF149 (ENSLAFG00000030178)	ENSLAFG00000006644 #22	CREG2 (ENSLAFG00000011751)	RFX8 (ENSLAFG00000011754)	MAP4K4 (ENSLAFG00000005765)	ENSLAFG00000013679	ENSLAFG00000021985	IL1R1 (ENSLAFG00000012677)	IL1RL2 (ENSLAFG00000012683)	IL1RL1 (ENSLAFG00000007804)	IL18R1 (ENSLAFG00000007809)	IL18RAP (ENSLAFG00000007815)	SLC9A4 (ENSLAFG00000011553)	SLC9A2 (ENSLAFG00000011557)	MFSD9 (ENSLAFG00000011208)	TMEM182 (ENSLAFG00000011215)	ENSLAFG00000027526
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.k #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.a.a #22	ENSGT00390000001618.ab #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a.a ##35	ENSGT00510000046406.f.a.a.b ##35	ENSGT00940000159434
Opossum	MODERN SPECIES	2	ENSMODG00000011981	ENSMODG00000012015	ENSMODG00000038680	ENSMODG00000012002	ENSMODG00000012024	TBX5 (ENSMODG00000012045)	TBX3 (ENSMODG00000012059)	ENSMODG00000041838	MED13L (ENSMODG00000012109)	PLA2G1B (ENSMODG00000003205) #16	MSI1 (ENSMODG00000003189) #17	COX6A1 (ENSMODG00000003168) #18	TRIAP1 (ENSMODG00000003157) #19	ENSMODG00000044919 #20	SRSF9 (ENSMODG00000003146) #21	ENSMODG00000003133 #22	ENSMODG00000045676 #23	COQ5 (ENSMODG00000003124) #24	RNF10 (ENSMODG00000003111) #25	POP5 (ENSMODG00000003066) #26	ENSMODG00000003051 #27	UNC119B (ENSMODG00000003021) #29	ACADS (ENSMODG00000003010) #30	SPPL3 (ENSMODG00000002983) #31	HNF1A (ENSMODG00000002966) #33	ENSMODG00000002937 #34	ENSMODG00000002922 #35	ENSMODG00000040188 ##35	ENSMODG00000051277	WSCD2 (ENSMODG00000002891)	CMKLR1 (ENSMODG00000023719)
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.k #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.a.a #22	ENSGT00390000001618.ab #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a.a ##35	ENSGT00510000046406.f.a.a.b ##35	ENSGT00940000159434
Diprotodontia	ANCESTRAL SPECIES	22	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.k #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.a.a #22	ENSGT00390000001618.ab #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a.a ##35	ENSGT00510000046406.f.a.a.b ##35	ENSGT00940000159434
Diprotodontia_a	ANCESTRAL SPECIES	22	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p.c.a ##13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612.k.a #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b.a.a #22	ENSGT00390000001618.ab #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00510000046406.f.a.b #35	ENSGT00510000046406.f.a.a.a ##35	ENSGT00510000046406.f.a.a.b ##35	ENSGT00940000159434
koala	DUPLICATION
koala	DUPLICATION
koala	MODERN SPECIES	126	TMEM233 (ENSPCIG00000003882)	PRKAB1 (ENSPCIG00000020171)	CIT (ENSPCIG00000019030) #9	BICDL1 (ENSPCIG00000018999) #10	RAB35 (ENSPCIG00000035039) #11	GCN1 (ENSPCIG00000012780) #12	ENSPCIG00000012696 ##13	ENSPCIG00000012695 #14	SIRT4 (ENSPCIG00000023827) #15	PLA2G1B (ENSPCIG00000023829) #16	MSI1 (ENSPCIG00000033744) #17	ENSPCIG00000032149 #18	TRIAP1 (ENSPCIG00000026000) #19	ENSPCIG00000025999 #20	SRSF9 (ENSPCIG00000025998) #21	ENSPCIG00000025996 #22	ENSPCIG00000025997 #23	COQ5 (ENSPCIG00000025993) #24	RNF10 (ENSPCIG00000025990) #25	ENSPCIG00000035358	ENSPCIG00000025978 #27	MLEC (ENSPCIG00000025974) #28	ACADS (ENSPCIG00000025972) #30	SPPL3 (ENSPCIG00000025969) #31	HNF1A (ENSPCIG00000025966) #33	C12orf43 (ENSPCIG00000025962) #34	ENSPCIG00000007830 #35	ENSPCIG00000007834	ENSPCIG00000007837 ##35	ENSPCIG00000007839 ##35	WSCD2 (ENSPCIG00000007843)
koala	MODERN SPECIES	28	ENSPCIG00000034099	ENSPCIG00000032169	NPHP3 (ENSPCIG00000022810)	UBA5 (ENSPCIG00000023403)	ACKR4 (ENSPCIG00000023861)	ACAD11 (ENSPCIG00000023505)	DNAJC13 (ENSPCIG00000023891)	ACP3 (ENSPCIG00000023989)	CPNE4 (ENSPCIG00000023990)	MRPL3 (ENSPCIG00000023992)	NEK11 (ENSPCIG00000008796)	ASTE1 (ENSPCIG00000008797)	ATP2C1 (ENSPCIG00000008799)	PIK3R4 (ENSPCIG00000027899)	COL6A6 (ENSPCIG00000027869)	ENSPCIG00000034620 #22	ENSPCIG00000027858	ENSPCIG00000027854	ENSPCIG00000035105	CAPN7 (ENSPCIG00000027846)	SH3BP5 (ENSPCIG00000027843)	METTL6 (ENSPCIG00000027841)	ENSPCIG00000027839	HACL1 (ENSPCIG00000027834)	ENSPCIG00000032970	ANKRD28 (ENSPCIG00000027832)	GALNT15 (ENSPCIG00000028179)	ENSPCIG00000028178	OXNAD1 (ENSPCIG00000028177)	ENSPCIG00000033229	RFTN1 (ENSPCIG00000034556)
koala	MODERN SPECIES	116	ENSPCIG00000024992	TRAF7 (ENSPCIG00000024997)	CASKIN1 (ENSPCIG00000024999)	ENSPCIG00000025000	MLST8 (ENSPCIG00000025001)	ENSPCIG00000025002	PGP (ENSPCIG00000025003)	E4F1 (ENSPCIG00000025006)	DNASE1L2 (ENSPCIG00000025008)	ECI1 (ENSPCIG00000025011)	ENSPCIG00000025012	ENSPCIG00000025014	ENSPCIG00000029225	ENSPCIG00000036753	ENSPCIG00000025023	ENSPCIG00000035113 #22	CCNF (ENSPCIG00000025031)	C16orf54 (ENSPCIG00000025120)	ZG16 (ENSPCIG00000025122)	KIF22 (ENSPCIG00000025123)	MAZ (ENSPCIG00000025125)	ENSPCIG00000032624	ENSPCIG00000033291	MVP (ENSPCIG00000025128)	ENSPCIG00000031008	CDIPT (ENSPCIG00000025130)	SEZ6L2 (ENSPCIG00000025132)	ASPHD1 (ENSPCIG00000025134)	KCTD13 (ENSPCIG00000025136)	TMEM219 (ENSPCIG00000036916)	TAOK2 (ENSPCIG00000025140)
Common wonbat	MODERN SPECIES	52	TMEM233 (ENSVURG00010006210)	PRKAB1 (ENSVURG00010006217)	CIT (ENSVURG00010006254) #9	BICDL1 (ENSVURG00010006480) #10	RAB35 (ENSVURG00010006495) #11	GCN1 (ENSVURG00010006522) #12	ENSVURG00010006573 ##13	ENSVURG00010006611 #14	SIRT4 (ENSVURG00010006627) #15	PLA2G1B (ENSVURG00010006637) #16	MSI1 (ENSVURG00010006643) #17	ENSVURG00010006654 #18	TRIAP1 (ENSVURG00010006658) #19	GATC (ENSVURG00010006663) #20	ENSVURG00010006672 #21	DYNLL1 (ENSVURG00010006677) #22	COQ5 (ENSVURG00010006692) #24	RNF10 (ENSVURG00010006703) #25	POP5 (ENSVURG00010006745) #26	ENSVURG00010006764 #27	MLEC (ENSVURG00010006774) #28	UNC119B (ENSVURG00010006778) #29	ACADS (ENSVURG00010006787) #30	SPPL3 (ENSVURG00010006795) #31	HNF1A (ENSVURG00010006801) #33	ENSVURG00010006811 #34	ENSVURG00010006817 #35	ENSVURG00010006825 ##35	ENSVURG00010006830 ##35	WSCD2 (ENSVURG00010006840)	CMKLR1 (ENSVURG00010006850)
Wallaby	MODERN SPECIES	2447																DYNLL1 (ENSMEUG00000002025) #22	COQ5 (ENSMEUG00000002026) #24
Tasmanian devil	MODERN SPECIES		TMEM233 (ENSSHAG00000029008)	PRKAB1 (ENSSHAG00000018118)	CIT (ENSSHAG00000018136) #9	BICDL1 (ENSSHAG00000027347) #10	RAB35 (ENSSHAG00000023050) #11	GCN1 (ENSSHAG00000018556) #12	ENSSHAG00000001623 ##13	ENSSHAG00000000074 #14	SIRT4 (ENSSHAG00000021964) #15	PLA2G1B (ENSSHAG00000007286) #16	ENSSHAG00000023097 #17	ENSSHAG00000024956 #18	TRIAP1 (ENSSHAG00000023872) #19	SRSF9 (ENSSHAG00000028565) #21	ENSSHAG00000021038 #20	ENSSHAG00000027049 #22	COQ5 (ENSSHAG00000031460) #24	RNF10 (ENSSHAG00000003217) #25	POP5 (ENSSHAG00000023744) #26	ENSSHAG00000025358 #27	MLEC (ENSSHAG00000020879) #28	UNC119B (ENSSHAG00000029449) #29	ACADS (ENSSHAG00000015491) #30	SPPL3 (ENSSHAG00000015326) #31	HNF1A (ENSSHAG00000014771) #33	ENSSHAG00000024327 #34	ENSSHAG00000014676 #35	ENSSHAG00000014420 ##35	ENSSHAG00000030021 ##35	ENSSHAG00000012611	ENSSHAG00000031957
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000157940	ENSGT00390000016881	ENSGT00390000006573	ENSGT00940000153481.C	ENSGT00950000183130.B	ENSGT00390000013549.a.a	ENSGT00530000063860.b	ENSGT01060000248594.e.b	ENSGT00390000010391	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00390000000378.d.b.a.b #22	ENSGT00390000001618.bb #23	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000154335.a	ENSGT00390000013335	ENSGT00390000017209	ENSGT00530000063691.b	ENSGT00940000159738	ENSGT00940000160136	ENSGT00550000075118	ENSGT00940000155749.d	ENSGT00940000153137.a.b.b.b	ENSGT01100000263626	ENSGT00940000158527
Opossum	MODERN SPECIES	3	ENSMODG00000009995	ENSMODG00000010017	ALG5 (ENSMODG00000010043)	EXOSC8 (ENSMODG00000040252)	SUPT20H (ENSMODG00000010085)	POSTN (ENSMODG00000010145)	TRPC4 (ENSMODG00000010167)	ENSMODG00000039139	ENSMODG00000048992	FREM2 (ENSMODG00000010202)	STOML3 (ENSMODG00000010211)	PROSER1 (ENSMODG00000010240)	NHLRC3 (ENSMODG00000010254)	ENSMODG00000047369	COG6 (ENSMODG00000010307)	ENSMODG00000024116 #22	FOXO1 (ENSMODG00000010342)	MRPS31 (ENSMODG00000010347)	SLC25A15 (ENSMODG00000044052)	ENSMODG00000010391	ENSMODG00000036949	THSD1 (ENSMODG00000010405)	VPS36 (ENSMODG00000010420)	NEK3 (ENSMODG00000038768)	NEK5 (ENSMODG00000028479)	ALG11 (ENSMODG00000010479)	ATP7B (ENSMODG00000010500)	CCDC70 (ENSMODG00000024110)	ENSMODG00000040020	WDFY2 (ENSMODG00000010528)	INTS6 (ENSMODG00000010648)
Marsupialia_b	ANCESTRAL SPECIES	20	ENSGT00940000157940	ENSGT00390000016881	ENSGT00390000006573	ENSGT00940000153481.C	ENSGT00950000183130.B	ENSGT00390000013549.a.a	ENSGT00530000063860.b	ENSGT01060000248594.e.b	ENSGT00390000010391	ENSGT00940000155313	ENSGT01030000234614.B.a.a.b	ENSGT00730000111188	ENSGT00390000008657	ENSGT00990000203589.a.b.a.a	ENSGT00390000013518	ENSGT00390000000378.d.b.a.b #22	ENSGT00390000001618.bb #23	ENSGT00940000161558	ENSGT00390000010017	ENSGT00730000110966	ENSGT00940000154335.a	ENSGT00390000013335	ENSGT00390000017209	ENSGT00530000063691.b	ENSGT00940000159738	ENSGT00940000160136	ENSGT00550000075118	ENSGT00940000155749.d	ENSGT00940000153137.a.b.b.b	ENSGT01100000263626	ENSGT00940000158527
Tasmanian devil	MODERN SPECIES	2	RFXAP (ENSSHAG00000023216)	ENSSHAG00000001186	ALG5 (ENSSHAG00000004230)	EXOSC8 (ENSSHAG00000005532)	SUPT20H (ENSSHAG00000005725)	POSTN (ENSSHAG00000011227)	TRPC4 (ENSSHAG00000011972)	ENSSHAG00000025671	ENSSHAG00000023606	FREM2 (ENSSHAG00000002649)	STOML3 (ENSSHAG00000006814)	PROSER1 (ENSSHAG00000007220)	NHLRC3 (ENSSHAG00000007495)	LHFPL6 (ENSSHAG00000028858)	COG6 (ENSSHAG00000012320)	ENSSHAG00000000300 #22	ENSSHAG00000023232	FOXO1 (ENSSHAG00000027369)	ENSSHAG00000007140	ENSSHAG00000007778	ENSSHAG00000008155	ENSSHAG00000009283	ENSSHAG00000026952	ENSSHAG00000009985	ENSSHAG00000010217	CCDC70 (ENSSHAG00000012251)	ENSSHAG00000022902	WDFY2 (ENSSHAG00000028867)	INTS6 (ENSSHAG00000023547)	SERPINE3 (ENSSHAG00000014618)	FAM124A (ENSSHAG00000030020)
Diprotodontia	ANCESTRAL SPECIES	160																ENSGT00390000000378.d.b.a.b #22	ENSGT00390000001618.bb #23
Diprotodontia_a	ANCESTRAL SPECIES	144																ENSGT00390000000378.d.b.a.b #22	ENSGT00390000001618.bb #23
koala	MODERN SPECIES	197						POSTN (ENSPCIG00000018838)	TRPC4 (ENSPCIG00000004362)	ENSPCIG00000004578	UFM1 (ENSPCIG00000030753)	FREM2 (ENSPCIG00000037129)	STOML3 (ENSPCIG00000021472)	PROSER1 (ENSPCIG00000021474)	NHLRC3 (ENSPCIG00000021476)	COG6 (ENSPCIG00000024515)	ENSPCIG00000023187	ENSPCIG00000035813 #22	ENSPCIG00000023178 #23	FOXO1 (ENSPCIG00000023175)	MRPS31 (ENSPCIG00000023173)	SLC25A15 (ENSPCIG00000037032)	ENSPCIG00000007124	THSD1 (ENSPCIG00000007135)	VPS36 (ENSPCIG00000007138)	ENSPCIG00000007145	NEK3 (ENSPCIG00000007151)	NEK5 (ENSPCIG00000007170)	ALG11 (ENSPCIG00000007175)	ATP7B (ENSPCIG00000007182)	CCDC70 (ENSPCIG00000007188)	ENSPCIG00000033940	WDFY2 (ENSPCIG00000028314)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.b #22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.b #22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.b #22
Diprotodontia_a	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.b #22
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1009	NTHL1 (ENSVURG00010010768)	TSC2 (ENSVURG00010010698)	PKD1 (ENSVURG00010010585)	RAB26 (ENSVURG00010010538)	TRAF7 (ENSVURG00010010481)	CASKIN1 (ENSVURG00010009916)	ENSVURG00010009859	MLST8 (ENSVURG00010009824)	ENSVURG00010009812	PGP (ENSVURG00010009806)	E4F1 (ENSVURG00010009677)	DNASE1L2 (ENSVURG00010009654)	ECI1 (ENSVURG00010009645)	RNPS1 (ENSVURG00010009617)	ENSVURG00010009579	ENSVURG00010009573 #22	ENSVURG00010009296	CCNF (ENSVURG00010009221)	ENSVURG00010009213	ZG16 (ENSVURG00010009203)	KIF22 (ENSVURG00010009196)	MAZ (ENSVURG00010009170)	ENSVURG00010009160	MVP (ENSVURG00010009147)	CDIPT (ENSVURG00010009112)	ENSVURG00010009103	SEZ6L2 (ENSVURG00010009016)	ASPHD1 (ENSVURG00010008994)	KCTD13 (ENSVURG00010008984)	TMEM219 (ENSVURG00010008951)	TAOK2 (ENSVURG00010008905)
Common wonbat	MODERN SPECIES	740	ALG5 (ENSVURG00010016628)	ENSVURG00010016647	SUPT20H (ENSVURG00010016704)	ENSVURG00010016975	POSTN (ENSVURG00010016998)	TRPC4 (ENSVURG00010017160)	ENSVURG00010017206	UFM1 (ENSVURG00010017221)	FREM2 (ENSVURG00010017236)	STOML3 (ENSVURG00010017258)	PROSER1 (ENSVURG00010017274)	NHLRC3 (ENSVURG00010017303)	ENSVURG00010017311	ENSVURG00010017317	COG6 (ENSVURG00010017325)	ENSVURG00010017365 #22	FOXO1 (ENSVURG00010017374)	MRPS31 (ENSVURG00010017378)	SLC25A15 (ENSVURG00010017389)	THSD1 (ENSVURG00010017395)	VPS36 (ENSVURG00010017407)	ENSVURG00010017419	NEK3 (ENSVURG00010017431)	ENSVURG00010017553	ALG11 (ENSVURG00010017584)	ATP7B (ENSVURG00010017621)	CCDC70 (ENSVURG00010017787)	ENSVURG00010017791	WDFY2 (ENSVURG00010017803)	ENSVURG00010017810	INTS6 (ENSVURG00010017825)
Platypus	MODERN SPECIES	11	BICDL1 (ENSOANG00000039920) #10	ENSOANG00000037945 #10	RAB35 (ENSOANG00000041217) #11	GCN1 (ENSOANG00000015677) #12	RPLP0 (ENSOANG00000006524) ##13	ENSOANG00000006522 #14	SIRT4 (ENSOANG00000004138) #15	PLA2G1B (ENSOANG00000045112) #16	MSI1 (ENSOANG00000044030) #17	ENSOANG00000039273 #18	ENSOANG00000040418 #19	ENSOANG00000038145 #20	ENSOANG00000040045 #18	ENSOANG00000049704 #19	ENSOANG00000043494	DYNLL1 (ENSOANG00000015679) #22	COQ5 (ENSOANG00000045737) #24	RNF10 (ENSOANG00000001790) #25	POP5 (ENSOANG00000001792) #26	ENSOANG00000038214 #27	MLEC (ENSOANG00000046458) #28	UNC119B (ENSOANG00000042245) #29	ACADS (ENSOANG00000007272) #30	ENSOANG00000036592	P2RX2 (ENSOANG00000044593) ##37	POLE (ENSOANG00000010627)	PXMP2 (ENSOANG00000010625)	ENSOANG00000049259	PGAM5 (ENSOANG00000045157)	ENSOANG00000040597	PUS1 (ENSOANG00000036346)
Sauria	ANCESTRAL SPECIES	11	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Archelosauria	ANCESTRAL SPECIES	14	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Cryptodira	ANCESTRAL SPECIES	34	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Testudinoidea	ANCESTRAL SPECIES	31	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Testudinidae	ANCESTRAL SPECIES	40	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT01100000263696	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Goode s thornscrub tortoise	MODERN SPECIES	4	BICDL1 (ENSGEVG00005018710) #10	RAB35 (ENSGEVG00005018691) #11	GCN1 (ENSGEVG00005018612) #12	RPLP0 (ENSGEVG00005018585) ##13	PXN (ENSGEVG00005018555) #14	SIRT4 (ENSGEVG00005018505) #15	ENSGEVG00005018486	ENSGEVG00005018471	PLA2G1B (ENSGEVG00005018450) #16	MSI1 (ENSGEVG00005018425) #17	ENSGEVG00005018401 #18	TRIAP1 (ENSGEVG00005018384) #19	GATC (ENSGEVG00005018366) #20	SRSF9 (ENSGEVG00005018349) #21	ENSGEVG00005018331	DYNLL1 (ENSGEVG00005018320) #22	COQ5 (ENSGEVG00005018257) #24	RNF10 (ENSGEVG00005018211) #25	POP5 (ENSGEVG00005018187) #26	CABP1 (ENSGEVG00005018113) #27	MLEC (ENSGEVG00005018074) #28	ACADS (ENSGEVG00005018019) #30	SPPL3 (ENSGEVG00005017954) #31	HNF1A (ENSGEVG00005017814) #33	C12orf43 (ENSGEVG00005017772) #34	LIMK2 (ENSGEVG00005017689)	PIK3IP1 (ENSGEVG00005017607)	PATZ1 (ENSGEVG00005017501)	DRG1 (ENSGEVG00005017468)	EIF4ENIF1 (ENSGEVG00005017367)	SFI1 (ENSGEVG00005017262)
Abingdon island giant tortoise	MODERN SPECIES	325													GATC (ENSCABG00000018924) #20	SRSF9 (ENSCABG00000018928) #21	ENSCABG00000018931	DYNLL1 (ENSCABG00000018933) #22	COQ5 (ENSCABG00000018936) #24	RNF10 (ENSCABG00000018946) #25	POP5 (ENSCABG00000018971) #26	CABP1 (ENSCABG00000018974) #27	MLEC (ENSCABG00000018976) #28	UNC119B (ENSCABG00000018979) #29	ACADS (ENSCABG00000018982) #30	SPPL3 (ENSCABG00000018986) #31	HNF1A (ENSCABG00000018989) #33	C12orf43 (ENSCABG00000018993) #34	RNF185 (ENSCABG00000018996)	LIMK2 (ENSCABG00000018998)	PIK3IP1 (ENSCABG00000019003)	PATZ1 (ENSCABG00000019007)	DRG1 (ENSCABG00000019009)
Emydidae	ANCESTRAL SPECIES	44	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00990000213388	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
Three-toed box turtle	MODERN SPECIES	378							SIRT4 (ENSTMTG00000013980) #15	ENSTMTG00000013973	ENSTMTG00000013935	PLA2G1B (ENSTMTG00000013924) #16	MSI1 (ENSTMTG00000013885) #17	COX6A1 (ENSTMTG00000013876) #18	TRIAP1 (ENSTMTG00000013872) #19	GATC (ENSTMTG00000013864) #20	SRSF9 (ENSTMTG00000013857) #21	DYNLL1 (ENSTMTG00000013850) #22	ENSTMTG00000013843	COQ5 (ENSTMTG00000013831) #24	RNF10 (ENSTMTG00000013817) #25	CABP1 (ENSTMTG00000013779) #27	MLEC (ENSTMTG00000013772) #28	UNC119B (ENSTMTG00000013760) #29	ACADS (ENSTMTG00000013744) #30	SPPL3 (ENSTMTG00000013720) #31	HNF1A (ENSTMTG00000013688) #33	C12orf43 (ENSTMTG00000013672) #34	RNF185 (ENSTMTG00000013649)	LIMK2 (ENSTMTG00000013621)	PIK3IP1 (ENSTMTG00000013601)	PATZ1 (ENSTMTG00000013572)	DRG1 (ENSTMTG00000013554)
painted turtle	MODERN SPECIES	787	PRKAB1 (ENSCPBG00000012643)	CIT (ENSCPBG00000012634) #9	BICDL1 (ENSCPBG00000012633) #10	RAB35 (ENSCPBG00000012631) #11	GCN1 (ENSCPBG00000011692) #12	RPLP0 (ENSCPBG00000011382) ##13	SIRT4 (ENSCPBG00000011356) #15	ENSCPBG00000011354	ENSCPBG00000011352	PLA2G1B (ENSCPBG00000011351) #16	MSI1 (ENSCPBG00000011349) #17	ENSCPBG00000011345 #18	TRIAP1 (ENSCPBG00000011343) #19	GATC (ENSCPBG00000011342) #20	SRSF9 (ENSCPBG00000011340) #21	DYNLL1 (ENSCPBG00000011339) #22	ENSCPBG00000011336	COQ5 (ENSCPBG00000011334) #24	POP5 (ENSCPBG00000011331) #26	RNF10 (ENSCPBG00000011324) #25	CABP1 (ENSCPBG00000011320) #27	MLEC (ENSCPBG00000011318) #28	UNC119B (ENSCPBG00000011311) #29	ACADS (ENSCPBG00000011308) #30	SPPL3 (ENSCPBG00000011305) #31	HNF1A (ENSCPBG00000011294) #33	C12orf43 (ENSCPBG00000011291) #34	RNF185 (ENSCPBG00000011289)	LIMK2 (ENSCPBG00000011286)	PIK3IP1 (ENSCPBG00000011281)	PATZ1 (ENSCPBG00000011277)
Chinese turtle	MODERN SPECIES	435																DYNLL1 (ENSPSIG00000013951) #22	COQ5 (ENSPSIG00000013600) #24	RNF10 (ENSPSIG00000013162) #25	POP5 (ENSPSIG00000013154) #26	CABP1 (ENSPSIG00000012699) #27	ENSPSIG00000012651 #28	UNC119B (ENSPSIG00000012635) #29	ACADS (ENSPSIG00000012613) #30	SPPL3 (ENSPSIG00000012511) #31	NWD2 (ENSPSIG00000012454)
Archosauria	ANCESTRAL SPECIES	19	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Australian saltwater crocodile	MODERN SPECIES	40	TMEM233 (ENSCPRG00005006368)	PRKAB1 (ENSCPRG00005006365)	CIT (ENSCPRG00005005717) #9	BICDL1 (ENSCPRG00005005640) #10	RAB35 (ENSCPRG00005005615) #11	GCN1 (ENSCPRG00005005340) #12	RPLP0 (ENSCPRG00005005164) ##13	PXN (ENSCPRG00005005122) #14	SIRT4 (ENSCPRG00005005108) #15	ENSCPRG00005005104	PLA2G1B (ENSCPRG00005005103) #16	MSI1 (ENSCPRG00005004931) #17	COX6A1 (ENSCPRG00005004922) #18	GATC (ENSCPRG00005004918) #20	SRSF9 (ENSCPRG00005004915) #21	DYNLL1 (ENSCPRG00005004914) #22	ENSCPRG00005004912 #23	COQ5 (ENSCPRG00005004884) #24	RNF10 (ENSCPRG00005004840) #25	POP5 (ENSCPRG00005004823) #26	CABP1 (ENSCPRG00005004801) #27	MLEC (ENSCPRG00005004787) #28	UNC119B (ENSCPRG00005004784) #29	ACADS (ENSCPRG00005004769) #30	SPPL3 (ENSCPRG00005004764) #31	HNF1A (ENSCPRG00005004748) #33	C12orf43 (ENSCPRG00005004742) #34	RNF185 (ENSCPRG00005004734)	LIMK2 (ENSCPRG00005004728)	PIK3IP1 (ENSCPRG00005004710)	PATZ1 (ENSCPRG00005004705)
Aves	DUPLICATION
Aves	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.lb #22
Neognathae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.lb #22
Galloanserae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.lb #22
Phasianidae	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.lb #22
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.lb #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Chicken	MODERN SPECIES	6	BICDL1 (ENSGALG00010020865) #10	RAB35 (ENSGALG00010020845) #11	GCN1 (ENSGALG00010021435) #12	RPLP0 (ENSGALG00010021427) ##13	PXN (ENSGALG00010021649) #14	SIRT4 (ENSGALG00010021415) #15	PLA2G1B (ENSGALG00010026939) #16	ENSGALG00010021397	MSI1 (ENSGALG00010021383) #17	COX6A1 (ENSGALG00010021315) #18	TRIAP1 (ENSGALG00010021311) #19	GATC (ENSGALG00010021296) #20	ENSGALG00010021278 #23	COQ5 (ENSGALG00010021266) #24	ENSGALG00010021249 #23	DYL1 (ENSGALG00010021243) #22	ENSGALG00010021189 #22	DYL2 (ENSGALG00010021185) #22	RNF10 (ENSGALG00010023102) #25	POP5 (ENSGALG00010023093) #26	CABP5 (ENSGALG00010023019) #27	MLEC (ENSGALG00010026999) #28	UNC119B (ENSGALG00010022933) #29	ACADS (ENSGALG00010022862) #30	SPPL3 (ENSGALG00010022806) #31	HNF1A (ENSGALG00010022741) #33	C12orf43 (ENSGALG00010022718) #34	RNF5 (ENSGALG00010022709)	LIMK2 (ENSGALG00010026980)	PIK3IP1 (ENSGALG00010022695)	PATZ1 (ENSGALG00010022649)
Aves	DUPLICATION
Aves	ANCESTRAL SPECIES	19	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.a #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
African ostrich	MODERN SPECIES	1054	CIT (ENSSCUG00000019004) #9	ENSSCUG00000019003	RAB35 (ENSSCUG00000019002) #11	GCN1 (ENSSCUG00000018987) #12	RPLP0 (ENSSCUG00000018968) ##13	PXN (ENSSCUG00000018966) #14	SIRT4 (ENSSCUG00000018959) #15	ENSSCUG00000018957	ENSSCUG00000018955	PLA2G1B (ENSSCUG00000018954) #16	MSI1 (ENSSCUG00000018952) #17	COX6A1 (ENSSCUG00000018948) #18	GATC (ENSSCUG00000018944) #20	COQ5 (ENSSCUG00000018943) #24	ENSSCUG00000018942 #22	ENSSCUG00000018941 #22	ENSSCUG00000018940 #23	RNF10 (ENSSCUG00000018939) #25	CABP1 (ENSSCUG00000018938) #27	MLEC (ENSSCUG00000018937) #28	UNC119B (ENSSCUG00000018936) #29	ACADS (ENSSCUG00000018935) #30	SPPL3 (ENSSCUG00000018934) #31	HNF1A (ENSSCUG00000018933) #33	C12orf43 (ENSSCUG00000018932) #34	RNF185 (ENSSCUG00000018931)	LIMK2 (ENSSCUG00000018930)	PIK3IP1 (ENSSCUG00000018928)	PATZ1 (ENSSCUG00000018927)	DRG1 (ENSSCUG00000018926)	SFI1 (ENSSCUG00000018925)
Neognathae	ANCESTRAL SPECIES	15	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133
Galloanserae	DUPLICATION
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00390000015428	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34
Anatidae	ANCESTRAL SPECIES	39	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00960000190102	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a
Pink-footed goose	MODERN SPECIES	83	PRKAB1 (ENSABRG00000018310)	CIT (ENSABRG00000017786) #9	BICDL1 (ENSABRG00000017730) #10	RAB35 (ENSABRG00000017725) #11	GCN1 (ENSABRG00000016655) #12	RPLP0 (ENSABRG00000016497) ##13	PXN (ENSABRG00000016436) #14	SIRT4 (ENSABRG00000016419) #15	PLA2G1B (ENSABRG00000016412) #16	MSI1 (ENSABRG00000016398) #17	COX6A1 (ENSABRG00000016394) #18	TRIAP1 (ENSABRG00000016389) #19	GATC (ENSABRG00000016378) #20	ENSABRG00000016356 #22	COQ5 (ENSABRG00000016350) #24	ENSABRG00000016344 #22	ENSABRG00000016341 #23	ENSABRG00000016337 #22	ENSABRG00000016323 #22	ENSABRG00000016316	RNF10 (ENSABRG00000016061) #25	POP5 (ENSABRG00000016028) #26	CABP1 (ENSABRG00000016015) #27	MLEC (ENSABRG00000016002) #28	UNC119B (ENSABRG00000015994) #29	ACADS (ENSABRG00000015976) #30	SPPL3 (ENSABRG00000015919) #31	HNF1A (ENSABRG00000015909) #33	C12orf43 (ENSABRG00000015894) #34	RNF185 (ENSABRG00000015886)	LIMK2 (ENSABRG00000015262)
Duck	MODERN SPECIES	7	BICDL1 (ENSAPLG00000010709) #10	RAB35 (ENSAPLG00000029700) #11	GCN1 (ENSAPLG00000010927) #12	RPLP0 (ENSAPLG00000012902) ##13	PXN (ENSAPLG00000012909) #14	ENSAPLG00000023537	SIRT4 (ENSAPLG00000013628) #15	PLA2G1B (ENSAPLG00000013778) #16	ENSAPLG00000030833 #17	ENSAPLG00000023986 #17	COX6A1 (ENSAPLG00000014977) #18	TRIAP1 (ENSAPLG00000027294) #19	GATC (ENSAPLG00000017939) #20	ENSAPLG00000016659 #22	COQ5 (ENSAPLG00000015103) #24	ENSAPLG00000020807 #22	ENSAPLG00000018997 #22	RNF10 (ENSAPLG00000015268) #25	POP5 (ENSAPLG00000015761) #26	ENSAPLG00000025920	CABP1 (ENSAPLG00000015765) #27	ACADS (ENSAPLG00000016040) #30	SPPL3 (ENSAPLG00000001664) #31	HNF1A (ENSAPLG00000002580) #33	C12orf43 (ENSAPLG00000018598) #34	RNF185 (ENSAPLG00000003040)	LIMK2 (ENSAPLG00000003115)	PIK3IP1 (ENSAPLG00000003911)	PATZ1 (ENSAPLG00000003934)	DRG1 (ENSAPLG00000004250)	EIF4ENIF1 (ENSAPLG00000004503)
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133
Phasianidae	ANCESTRAL SPECIES	13	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00390000015428	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.lb #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a
Turkey	DUPLICATION
Turkey	MODERN SPECIES	8	DIP2B (ENSMGAG00000010609)	ATF1 (ENSMGAG00000010646)	ENSMGAG00000010659	ENSMGAG00000010667	ENSMGAG00000016054	ENSMGAG00000005282	ENSMGAG00000022175	ENSMGAG00000005352	ENSMGAG00000005402	ENSMGAG00000005560	ENSMGAG00000005511	ENSMGAG00000008666 #25	ENSMGAG00000019123	ENSMGAG00000022883 #22	ENSMGAG00000021181 #22	ENSMGAG00000017798 #22	ENSMGAG00000021900 #23	ENSMGAG00000019160 #22	ENSMGAG00000020783 #23	COX6A1 (ENSMGAG00000018548) #18	ENSMGAG00000008738 #19	GATC (ENSMGAG00000008733) #20	COQ5 (ENSMGAG00000008710) #24	ENSMGAG00000020960 #17	ENSMGAG00000016518 #17	ENSMGAG00000016526 #16	ENSMGAG00000008796 #16	ENSMGAG00000008852 #15	ENSMGAG00000008856 #14	ENSMGAG00000008894 ##13	GCN1 (ENSMGAG00000008798) #12
Turkey	MODERN SPECIES	8	ENSMGAG00000010659	ENSMGAG00000010667	ENSMGAG00000016054	ENSMGAG00000005282	ENSMGAG00000022175	ENSMGAG00000005352	ENSMGAG00000005402	ENSMGAG00000005560	ENSMGAG00000005511	ENSMGAG00000008666 #25	ENSMGAG00000019123	ENSMGAG00000022883 #22	ENSMGAG00000021181 #22	ENSMGAG00000017798 #22	ENSMGAG00000021900 #23	ENSMGAG00000019160 #22	ENSMGAG00000020783 #23	COX6A1 (ENSMGAG00000018548) #18	ENSMGAG00000008738 #19	GATC (ENSMGAG00000008733) #20	COQ5 (ENSMGAG00000008710) #24	ENSMGAG00000020960 #17	ENSMGAG00000016518 #17	ENSMGAG00000016526 #16	ENSMGAG00000008796 #16	ENSMGAG00000008852 #15	ENSMGAG00000008856 #14	ENSMGAG00000008894 ##13	GCN1 (ENSMGAG00000008798) #12	ENSMGAG00000008935 #10	ENSMGAG00000008922 #11
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	6	PRKAB1 (ENSCJPG00005014543)	CIT (ENSCJPG00005014315) #9	ENSCJPG00005014312	BICDL1 (ENSCJPG00005014310) #10	RAB35 (ENSCJPG00005014309) #11	GCN1 (ENSCJPG00005013460) #12	RPLP0 (ENSCJPG00005013458) ##13	PXN (ENSCJPG00005013456) #14	SIRT4 (ENSCJPG00005013453) #15	ENSCJPG00005013452 #16	ENSCJPG00005013451 #16	MSI1 (ENSCJPG00005013400) #17	ENSCJPG00005013399 #18	TRIAP1 (ENSCJPG00005013394) #19	GATC (ENSCJPG00005013378) #20	ENSCJPG00005013367 #22	COQ5 (ENSCJPG00005013365) #24	ENSCJPG00005013357 #22	ENSCJPG00005013356 #23	ENSCJPG00005013355 #22	ENSCJPG00005013354 #22	RNF10 (ENSCJPG00005013353) #25	POP5 (ENSCJPG00005013351) #26	CABP1 (ENSCJPG00005013349) #27	MLEC (ENSCJPG00005013348) #28	UNC119B (ENSCJPG00005013347) #29	ACADS (ENSCJPG00005013307) #30	SPPL3 (ENSCJPG00005013306) #31	HNF1A (ENSCJPG00005013300) #33	ENSCJPG00005013298	RNF185 (ENSCJPG00005013294)
Japanese quail	MODERN SPECIES	6	ENSCJPG00005014312	BICDL1 (ENSCJPG00005014310) #10	RAB35 (ENSCJPG00005014309) #11	GCN1 (ENSCJPG00005013460) #12	RPLP0 (ENSCJPG00005013458) ##13	PXN (ENSCJPG00005013456) #14	SIRT4 (ENSCJPG00005013453) #15	ENSCJPG00005013452 #16	ENSCJPG00005013451 #16	MSI1 (ENSCJPG00005013400) #17	ENSCJPG00005013399 #18	TRIAP1 (ENSCJPG00005013394) #19	GATC (ENSCJPG00005013378) #20	ENSCJPG00005013367 #22	COQ5 (ENSCJPG00005013365) #24	ENSCJPG00005013357 #22	ENSCJPG00005013356 #23	ENSCJPG00005013355 #22	ENSCJPG00005013354 #22	RNF10 (ENSCJPG00005013353) #25	POP5 (ENSCJPG00005013351) #26	CABP1 (ENSCJPG00005013349) #27	MLEC (ENSCJPG00005013348) #28	UNC119B (ENSCJPG00005013347) #29	ACADS (ENSCJPG00005013307) #30	SPPL3 (ENSCJPG00005013306) #31	HNF1A (ENSCJPG00005013300) #33	ENSCJPG00005013298	RNF185 (ENSCJPG00005013294)	LIMK2 (ENSCJPG00005013291)	PIK3IP1 (ENSCJPG00005013285)
Anatidae	ANCESTRAL SPECIES	39	ENSGT00940000160605	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00960000190102	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33
Pink-footed goose	MODERN SPECIES	83	HSPB8 (ENSABRG00000018319)	TMEM233 (ENSABRG00000018314)	PRKAB1 (ENSABRG00000018310)	CIT (ENSABRG00000017786) #9	BICDL1 (ENSABRG00000017730) #10	RAB35 (ENSABRG00000017725) #11	GCN1 (ENSABRG00000016655) #12	RPLP0 (ENSABRG00000016497) ##13	PXN (ENSABRG00000016436) #14	SIRT4 (ENSABRG00000016419) #15	PLA2G1B (ENSABRG00000016412) #16	MSI1 (ENSABRG00000016398) #17	COX6A1 (ENSABRG00000016394) #18	TRIAP1 (ENSABRG00000016389) #19	GATC (ENSABRG00000016378) #20	ENSABRG00000016356 #22	COQ5 (ENSABRG00000016350) #24	ENSABRG00000016344 #22	ENSABRG00000016341 #23	ENSABRG00000016337 #22	ENSABRG00000016323 #22	ENSABRG00000016316	RNF10 (ENSABRG00000016061) #25	POP5 (ENSABRG00000016028) #26	CABP1 (ENSABRG00000016015) #27	MLEC (ENSABRG00000016002) #28	UNC119B (ENSABRG00000015994) #29	ACADS (ENSABRG00000015976) #30	SPPL3 (ENSABRG00000015919) #31	HNF1A (ENSABRG00000015909) #33	C12orf43 (ENSABRG00000015894) #34
Duck	MODERN SPECIES	7	PRKAB1 (ENSAPLG00000009490)	CIT (ENSAPLG00000009657) #9	BICDL1 (ENSAPLG00000010709) #10	RAB35 (ENSAPLG00000029700) #11	GCN1 (ENSAPLG00000010927) #12	RPLP0 (ENSAPLG00000012902) ##13	PXN (ENSAPLG00000012909) #14	ENSAPLG00000023537	SIRT4 (ENSAPLG00000013628) #15	PLA2G1B (ENSAPLG00000013778) #16	ENSAPLG00000030833 #17	ENSAPLG00000023986 #17	COX6A1 (ENSAPLG00000014977) #18	TRIAP1 (ENSAPLG00000027294) #19	GATC (ENSAPLG00000017939) #20	ENSAPLG00000016659 #22	COQ5 (ENSAPLG00000015103) #24	ENSAPLG00000020807 #22	ENSAPLG00000018997 #22	RNF10 (ENSAPLG00000015268) #25	POP5 (ENSAPLG00000015761) #26	ENSAPLG00000025920	CABP1 (ENSAPLG00000015765) #27	ACADS (ENSAPLG00000016040) #30	SPPL3 (ENSAPLG00000001664) #31	HNF1A (ENSAPLG00000002580) #33	C12orf43 (ENSAPLG00000018598) #34	RNF185 (ENSAPLG00000003040)	LIMK2 (ENSAPLG00000003115)	PIK3IP1 (ENSAPLG00000003911)	PATZ1 (ENSAPLG00000003934)
Neognathae_b	ANCESTRAL SPECIES	31	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Passeriformes	DUPLICATION
Passeriformes	DUPLICATION
Passeriformes	ANCESTRAL SPECIES	15	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.d #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Passeriformes_d	ANCESTRAL SPECIES	14	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00990000210419	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.d #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Passeriformes_g	ANCESTRAL SPECIES	14	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00990000210419	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296.o	ENSGT00940000153340.B
Passeroidea	ANCESTRAL SPECIES	14	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296.o	ENSGT00940000159296.p
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	6	HSPB8 (ENSTGUG00000009236)	TMEM233 (ENSTGUG00000019601)	PRKAB1 (ENSTGUG00000009242)	CIT (ENSTGUG00000009264) #9	BICDL1 (ENSTGUG00000009346) #10	RAB35 (ENSTGUG00000009359) #11	GCN1 (ENSTGUG00000009369) #12	RPLP0 (ENSTGUG00000009458) ##13	ENSTGUG00000027068	PXN (ENSTGUG00000009484) #14	SIRT4 (ENSTGUG00000009512) #15	PLA2G1B (ENSTGUG00000009518) #16	MSI1 (ENSTGUG00000009534) #17	TRIAP1 (ENSTGUG00000025916) #19	COX6A1 (ENSTGUG00000009561) #20	DYNLL1 (ENSTGUG00000009566) #22	ENSTGUG00000021300	COQ5 (ENSTGUG00000009568) #24	ENSTGUG00000024942 #22	ENSTGUG00000018449	RNF10 (ENSTGUG00000009579) #25	POP5 (ENSTGUG00000024631) #26	ENSTGUG00000009611	MLEC (ENSTGUG00000026613) #28	UNC119B (ENSTGUG00000009628) #29	ACADS (ENSTGUG00000009634) #30	SPPL3 (ENSTGUG00000009651) #31	HNF1A (ENSTGUG00000009673) #33	C12orf43 (ENSTGUG00000009701) #34	RNF185 (ENSTGUG00000009710)	LIMK2 (ENSTGUG00000009721)
Zebra finch	MODERN SPECIES	6	CIT (ENSTGUG00000009264) #9	BICDL1 (ENSTGUG00000009346) #10	RAB35 (ENSTGUG00000009359) #11	GCN1 (ENSTGUG00000009369) #12	RPLP0 (ENSTGUG00000009458) ##13	ENSTGUG00000027068	PXN (ENSTGUG00000009484) #14	SIRT4 (ENSTGUG00000009512) #15	PLA2G1B (ENSTGUG00000009518) #16	MSI1 (ENSTGUG00000009534) #17	TRIAP1 (ENSTGUG00000025916) #19	COX6A1 (ENSTGUG00000009561) #20	DYNLL1 (ENSTGUG00000009566) #22	ENSTGUG00000021300	COQ5 (ENSTGUG00000009568) #24	ENSTGUG00000024942 #22	ENSTGUG00000018449	RNF10 (ENSTGUG00000009579) #25	POP5 (ENSTGUG00000024631) #26	ENSTGUG00000009611	MLEC (ENSTGUG00000026613) #28	UNC119B (ENSTGUG00000009628) #29	ACADS (ENSTGUG00000009634) #30	SPPL3 (ENSTGUG00000009651) #31	HNF1A (ENSTGUG00000009673) #33	C12orf43 (ENSTGUG00000009701) #34	RNF185 (ENSTGUG00000009710)	LIMK2 (ENSTGUG00000009721)	PIK3IP1 (ENSTGUG00000021045)	PATZ1 (ENSTGUG00000009749)	DRG1 (ENSTGUG00000009759)
Common canary	MODERN SPECIES	18	PRKAB1 (ENSSCAG00000004236)	CIT (ENSSCAG00000004210) #9	BICDL1 (ENSSCAG00000004198) #10	RAB35 (ENSSCAG00000004193) #11	GCN1 (ENSSCAG00000004171) #12	RPLP0 (ENSSCAG00000004162) ##13	PXN (ENSSCAG00000004143) #14	SIRT4 (ENSSCAG00000004138) #15	PLA2G1B (ENSSCAG00000004137) #16	MSI1 (ENSSCAG00000004129) #17	COX6A1 (ENSSCAG00000004117) #18	TRIAP1 (ENSSCAG00000004108) #19	GATC (ENSSCAG00000004104) #20	COQ5 (ENSSCAG00000004099) #24	ENSSCAG00000004096	DYNLL1 (ENSSCAG00000004090) #22	RNF10 (ENSSCAG00000003960) #25	POP5 (ENSSCAG00000003940) #26	CABP1 (ENSSCAG00000003935) #27	MLEC (ENSSCAG00000003929) #28	UNC119B (ENSSCAG00000003925) #29	ACADS (ENSSCAG00000003919) #30	SPPL3 (ENSSCAG00000003907) #31	HNF1A (ENSSCAG00000003899) #33	C12orf43 (ENSSCAG00000003891) #34	RNF185 (ENSSCAG00000003885)	LIMK2 (ENSSCAG00000003867)	PIK3IP1 (ENSSCAG00000003864)	PATZ1 (ENSSCAG00000003861)	DRG1 (ENSSCAG00000003856)	EIF4ENIF1 (ENSSCAG00000003852)
Medium ground finch	MODERN SPECIES	33	SRRM4 (ENSGFOG00000001436)	HSPB8 (ENSGFOG00000001446)	PRKAB1 (ENSGFOG00000001458)	CIT (ENSGFOG00000001495) #9	BICDL1 (ENSGFOG00000001555) #10	RAB35 (ENSGFOG00000001586) #11	GCN1 (ENSGFOG00000001683) #12	RPLP0 (ENSGFOG00000002227) ##13	PXN (ENSGFOG00000002246) #14	ENSGFOG00000002260	SIRT4 (ENSGFOG00000002280) #15	PLA2G1B (ENSGFOG00000002286) #16	MSI1 (ENSGFOG00000002307) #17	GATC (ENSGFOG00000002351) #20	TRIAP1 (ENSGFOG00000002366) #19	DYNLL1 (ENSGFOG00000002381) #22	ENSGFOG00000002396	COQ5 (ENSGFOG00000002404) #24	ENSGFOG00000002424	RNF10 (ENSGFOG00000002482) #25	ENSGFOG00000002831	CABP1 (ENSGFOG00000002850) #27	MLEC (ENSGFOG00000002929) #28	UNC119B (ENSGFOG00000002945) #29	ACADS (ENSGFOG00000002975) #30	SPPL3 (ENSGFOG00000003027) #31	HNF1A (ENSGFOG00000003042) #33	C12orf43 (ENSGFOG00000003117) #34	RNF185 (ENSGFOG00000003124)	LIMK2 (ENSGFOG00000003146)	PIK3IP1 (ENSGFOG00000003255)
Great tit	MODERN SPECIES	6	HSPB8 (ENSPMJG00000017343)	TMEM233 (ENSPMJG00000017346)	PRKAB1 (ENSPMJG00000017347)	CIT (ENSPMJG00000017348) #9	BICDL1 (ENSPMJG00000017350) #10	RAB35 (ENSPMJG00000017351) #11	GCN1 (ENSPMJG00000017352) #12	RPLP0 (ENSPMJG00000017788) ##13	PXN (ENSPMJG00000017789) #14	SIRT4 (ENSPMJG00000017800) #15	PLA2G1B (ENSPMJG00000017801) #16	MSI1 (ENSPMJG00000017802) #17	COX6A1 (ENSPMJG00000017924) #18	GATC (ENSPMJG00000017928) #20	TRIAP1 (ENSPMJG00000017929) #19	ENSPMJG00000017931 #22	ENSPMJG00000017932	COQ5 (ENSPMJG00000017933) #24	ENSPMJG00000017934 #22	ENSPMJG00000017935	RNF10 (ENSPMJG00000017936) #25	POP5 (ENSPMJG00000018005) #26	CABP1 (ENSPMJG00000018006) #27	MLEC (ENSPMJG00000018007) #28	UNC119B (ENSPMJG00000018008) #29	ACADS (ENSPMJG00000018009) #30	SPPL3 (ENSPMJG00000018010) #31	HNF1A (ENSPMJG00000018011) #33	C12orf43 (ENSPMJG00000018012) #34	RNF185 (ENSPMJG00000018013)	LIMK2 (ENSPMJG00000018014)
Passeriformes	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.mb.a.c.b #22
Great tit	MODERN SPECIES	6	CIT (ENSPMJG00000017348) #9	BICDL1 (ENSPMJG00000017350) #10	RAB35 (ENSPMJG00000017351) #11	GCN1 (ENSPMJG00000017352) #12	RPLP0 (ENSPMJG00000017788) ##13	PXN (ENSPMJG00000017789) #14	SIRT4 (ENSPMJG00000017800) #15	PLA2G1B (ENSPMJG00000017801) #16	MSI1 (ENSPMJG00000017802) #17	COX6A1 (ENSPMJG00000017924) #18	GATC (ENSPMJG00000017928) #20	TRIAP1 (ENSPMJG00000017929) #19	ENSPMJG00000017931 #22	ENSPMJG00000017932	COQ5 (ENSPMJG00000017933) #24	ENSPMJG00000017934 #22	ENSPMJG00000017935	RNF10 (ENSPMJG00000017936) #25	POP5 (ENSPMJG00000018005) #26	CABP1 (ENSPMJG00000018006) #27	MLEC (ENSPMJG00000018007) #28	UNC119B (ENSPMJG00000018008) #29	ACADS (ENSPMJG00000018009) #30	SPPL3 (ENSPMJG00000018010) #31	HNF1A (ENSPMJG00000018011) #33	C12orf43 (ENSPMJG00000018012) #34	RNF185 (ENSPMJG00000018013)	LIMK2 (ENSPMJG00000018014)	PIK3IP1 (ENSPMJG00000018116)	PATZ1 (ENSPMJG00000018117)	DRG1 (ENSPMJG00000018118)
Passeriformes	ANCESTRAL SPECIES	15	ENSGT00940000160605	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.d #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Passeriformes_d	ANCESTRAL SPECIES	14	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00990000210419	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.c.a #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.d #22	ENSGT01100000263696	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296.o	ENSGT00940000159296.p
Flycatcher	DUPLICATION
Flycatcher	MODERN SPECIES	6	PRKAB1 (ENSFALG00000007679)	CIT (ENSFALG00000007669) #9	BICDL1 (ENSFALG00000022900) #10	RAB35 (ENSFALG00000007652) #11	GCN1 (ENSFALG00000007644) #12	RPLP0 (ENSFALG00000007629) ##13	PXN (ENSFALG00000007602) #14	ENSFALG00000024985	SIRT4 (ENSFALG00000007591) #15	PLA2G1B (ENSFALG00000007582) #16	MSI1 (ENSFALG00000007574) #17	COX6A1 (ENSFALG00000027549) #18	COQ5 (ENSFALG00000027384) #24	TRIAP1 (ENSFALG00000007566) #19	GATC (ENSFALG00000027227) #20	ENSFALG00000025428 #22	ENSFALG00000024964 #22	ENSFALG00000022892	RNF10 (ENSFALG00000007534) #25	POP5 (ENSFALG00000026108) #26	CABP1 (ENSFALG00000007531) #27	MLEC (ENSFALG00000025906) #28	ACADS (ENSFALG00000007511) #30	SPPL3 (ENSFALG00000026221) #31	HNF1A (ENSFALG00000007499) #33	C12orf43 (ENSFALG00000025877) #34	RNF185 (ENSFALG00000025026)	LIMK2 (ENSFALG00000007463)	PIK3IP1 (ENSFALG00000025316)	ENSFALG00000007450	ENSFALG00000026172
Flycatcher	MODERN SPECIES	6	CIT (ENSFALG00000007669) #9	BICDL1 (ENSFALG00000022900) #10	RAB35 (ENSFALG00000007652) #11	GCN1 (ENSFALG00000007644) #12	RPLP0 (ENSFALG00000007629) ##13	PXN (ENSFALG00000007602) #14	ENSFALG00000024985	SIRT4 (ENSFALG00000007591) #15	PLA2G1B (ENSFALG00000007582) #16	MSI1 (ENSFALG00000007574) #17	COX6A1 (ENSFALG00000027549) #18	COQ5 (ENSFALG00000027384) #24	TRIAP1 (ENSFALG00000007566) #19	GATC (ENSFALG00000027227) #20	ENSFALG00000025428 #22	ENSFALG00000024964 #22	ENSFALG00000022892	RNF10 (ENSFALG00000007534) #25	POP5 (ENSFALG00000026108) #26	CABP1 (ENSFALG00000007531) #27	MLEC (ENSFALG00000025906) #28	ACADS (ENSFALG00000007511) #30	SPPL3 (ENSFALG00000026221) #31	HNF1A (ENSFALG00000007499) #33	C12orf43 (ENSFALG00000025877) #34	RNF185 (ENSFALG00000025026)	LIMK2 (ENSFALG00000007463)	PIK3IP1 (ENSFALG00000025316)	ENSFALG00000007450	ENSFALG00000026172	DRG1 (ENSFALG00000007438)
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Golden eagle	MODERN SPECIES	25	PRKAB1 (ENSACCG00020008181)	CIT (ENSACCG00020008033) #9	BICDL1 (ENSACCG00020007860) #10	RAB35 (ENSACCG00020007842) #11	GCN1 (ENSACCG00020007815) #12	RPLP0 (ENSACCG00020007783) ##13	ENSACCG00020007770	SIRT4 (ENSACCG00020007745) #15	PLA2G1B (ENSACCG00020007737) #16	MSI1 (ENSACCG00020007708) #17	COX6A1 (ENSACCG00020007692) #18	TRIAP1 (ENSACCG00020007684) #19	GATC (ENSACCG00020007663) #20	ENSACCG00020007644	COQ5 (ENSACCG00020007634) #24	ENSACCG00020007625 #22	ENSACCG00020007614 #22	ENSACCG00020007607 #22	RNF10 (ENSACCG00020007598) #25	POP5 (ENSACCG00020007585) #26	CABP1 (ENSACCG00020007562) #27	MLEC (ENSACCG00020007546) #28	UNC119B (ENSACCG00020007538) #29	ACADS (ENSACCG00020007524) #30	SPPL3 (ENSACCG00020007484) #31	HNF1A (ENSACCG00020007465) #33	C12orf43 (ENSACCG00020007455) #34	RNF185 (ENSACCG00020007442)	LIMK2 (ENSACCG00020007422)	PIK3IP1 (ENSACCG00020007404)	PATZ1 (ENSACCG00020007374)
Kakapo	MODERN SPECIES	3	CIT (ENSSHBG00005012226) #9	BICDL1 (ENSSHBG00005011712) #10	RAB35 (ENSSHBG00005011673) #11	GCN1 (ENSSHBG00005011451) #12	RPLP0 (ENSSHBG00005011287) ##13	PXN (ENSSHBG00005011255) #14	SIRT4 (ENSSHBG00005011201) #15	PLA2G1B (ENSSHBG00005011181) #16	MSI1 (ENSSHBG00005011121) #17	ENSSHBG00005011091 #18	TRIAP1 (ENSSHBG00005011071) #19	GATC (ENSSHBG00005011044) #20	ENSSHBG00005011018	COQ5 (ENSSHBG00005010983) #24	ENSSHBG00005010938	DYNLL1 (ENSSHBG00005010894) #22	ENSSHBG00005010843	RNF10 (ENSSHBG00005010801) #25	POP5 (ENSSHBG00005010759) #26	CABP1 (ENSSHBG00005010695) #27	MLEC (ENSSHBG00005010669) #28	UNC119B (ENSSHBG00005010638) #29	ACADS (ENSSHBG00005010599) #30	SPPL3 (ENSSHBG00005010566) #31	HNF1A (ENSSHBG00005010507) #33	C12orf43 (ENSSHBG00005010470) #34	RNF185 (ENSSHBG00005010428)	LIMK2 (ENSSHBG00005019978)	PIK3IP1 (ENSSHBG00005019977)	PATZ1 (ENSSHBG00005019975)	DRG1 (ENSSHBG00005019974)
Aves	DUPLICATION
Aves	ANCESTRAL SPECIES																	ENSGT00390000000378.d.b.mb.b.a #22
Neognathae	ANCESTRAL SPECIES	15	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Phasianidae	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B	ENSGT00390000012071
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.lb #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296.q	ENSGT00940000153340.B	ENSGT00390000012071
Turkey	MODERN SPECIES	8	LARP4 (ENSMGAG00000010598)	DIP2B (ENSMGAG00000010609)	ATF1 (ENSMGAG00000010646)	ENSMGAG00000010659	ENSMGAG00000010667	ENSMGAG00000016054	ENSMGAG00000005282	ENSMGAG00000022175	ENSMGAG00000005352	ENSMGAG00000005402	ENSMGAG00000005560	ENSMGAG00000005511	ENSMGAG00000008666 #25	ENSMGAG00000019123	ENSMGAG00000022883 #22	ENSMGAG00000021181 #22	ENSMGAG00000017798 #22	ENSMGAG00000021900 #23	ENSMGAG00000019160 #22	ENSMGAG00000020783 #23	COX6A1 (ENSMGAG00000018548) #18	ENSMGAG00000008738 #19	GATC (ENSMGAG00000008733) #20	COQ5 (ENSMGAG00000008710) #24	ENSMGAG00000020960 #17	ENSMGAG00000016518 #17	ENSMGAG00000016526 #16	ENSMGAG00000008796 #16	ENSMGAG00000008852 #15	ENSMGAG00000008856 #14	ENSMGAG00000008894 ##13
Chicken	MODERN SPECIES	6	GCN1 (ENSGALG00010021435) #12	RPLP0 (ENSGALG00010021427) ##13	PXN (ENSGALG00010021649) #14	SIRT4 (ENSGALG00010021415) #15	PLA2G1B (ENSGALG00010026939) #16	ENSGALG00010021397	MSI1 (ENSGALG00010021383) #17	COX6A1 (ENSGALG00010021315) #18	TRIAP1 (ENSGALG00010021311) #19	GATC (ENSGALG00010021296) #20	ENSGALG00010021278 #23	COQ5 (ENSGALG00010021266) #24	ENSGALG00010021249 #23	DYL1 (ENSGALG00010021243) #22	ENSGALG00010021189 #22	DYL2 (ENSGALG00010021185) #22	RNF10 (ENSGALG00010023102) #25	POP5 (ENSGALG00010023093) #26	CABP5 (ENSGALG00010023019) #27	MLEC (ENSGALG00010026999) #28	UNC119B (ENSGALG00010022933) #29	ACADS (ENSGALG00010022862) #30	SPPL3 (ENSGALG00010022806) #31	HNF1A (ENSGALG00010022741) #33	C12orf43 (ENSGALG00010022718) #34	RNF5 (ENSGALG00010022709)	LIMK2 (ENSGALG00010026980)	PIK3IP1 (ENSGALG00010022695)	PATZ1 (ENSGALG00010022649)	DRG1 (ENSGALG00010022037)	EIF4ENIF1 (ENSGALG00010022027)
Japanese quail	MODERN SPECIES	6	GCN1 (ENSCJPG00005013460) #12	RPLP0 (ENSCJPG00005013458) ##13	PXN (ENSCJPG00005013456) #14	SIRT4 (ENSCJPG00005013453) #15	ENSCJPG00005013452 #16	ENSCJPG00005013451 #16	MSI1 (ENSCJPG00005013400) #17	ENSCJPG00005013399 #18	TRIAP1 (ENSCJPG00005013394) #19	GATC (ENSCJPG00005013378) #20	ENSCJPG00005013367 #22	COQ5 (ENSCJPG00005013365) #24	ENSCJPG00005013357 #22	ENSCJPG00005013356 #23	ENSCJPG00005013355 #22	ENSCJPG00005013354 #22	RNF10 (ENSCJPG00005013353) #25	POP5 (ENSCJPG00005013351) #26	CABP1 (ENSCJPG00005013349) #27	MLEC (ENSCJPG00005013348) #28	UNC119B (ENSCJPG00005013347) #29	ACADS (ENSCJPG00005013307) #30	SPPL3 (ENSCJPG00005013306) #31	HNF1A (ENSCJPG00005013300) #33	ENSCJPG00005013298	RNF185 (ENSCJPG00005013294)	LIMK2 (ENSCJPG00005013291)	PIK3IP1 (ENSCJPG00005013285)	PATZ1 (ENSCJPG00005013283)	DRG1 (ENSCJPG00005013279)	EIF4ENIF1 (ENSCJPG00005013151)
Anatidae	ANCESTRAL SPECIES	39	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00960000190102	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
Pink-footed goose	MODERN SPECIES	83	RAB35 (ENSABRG00000017725) #11	GCN1 (ENSABRG00000016655) #12	RPLP0 (ENSABRG00000016497) ##13	PXN (ENSABRG00000016436) #14	SIRT4 (ENSABRG00000016419) #15	PLA2G1B (ENSABRG00000016412) #16	MSI1 (ENSABRG00000016398) #17	COX6A1 (ENSABRG00000016394) #18	TRIAP1 (ENSABRG00000016389) #19	GATC (ENSABRG00000016378) #20	ENSABRG00000016356 #22	COQ5 (ENSABRG00000016350) #24	ENSABRG00000016344 #22	ENSABRG00000016341 #23	ENSABRG00000016337 #22	ENSABRG00000016323 #22	ENSABRG00000016316	RNF10 (ENSABRG00000016061) #25	POP5 (ENSABRG00000016028) #26	CABP1 (ENSABRG00000016015) #27	MLEC (ENSABRG00000016002) #28	UNC119B (ENSABRG00000015994) #29	ACADS (ENSABRG00000015976) #30	SPPL3 (ENSABRG00000015919) #31	HNF1A (ENSABRG00000015909) #33	C12orf43 (ENSABRG00000015894) #34	RNF185 (ENSABRG00000015886)	LIMK2 (ENSABRG00000015262)	PIK3IP1 (ENSABRG00000015168)	PATZ1 (ENSABRG00000015149)	DRG1 (ENSABRG00000015086)
Neognathae_b	ANCESTRAL SPECIES	159															ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B	ENSGT00390000012071
Golden eagle	MODERN SPECIES	25	BICDL1 (ENSACCG00020007860) #10	RAB35 (ENSACCG00020007842) #11	GCN1 (ENSACCG00020007815) #12	RPLP0 (ENSACCG00020007783) ##13	ENSACCG00020007770	SIRT4 (ENSACCG00020007745) #15	PLA2G1B (ENSACCG00020007737) #16	MSI1 (ENSACCG00020007708) #17	COX6A1 (ENSACCG00020007692) #18	TRIAP1 (ENSACCG00020007684) #19	GATC (ENSACCG00020007663) #20	ENSACCG00020007644	COQ5 (ENSACCG00020007634) #24	ENSACCG00020007625 #22	ENSACCG00020007614 #22	ENSACCG00020007607 #22	RNF10 (ENSACCG00020007598) #25	POP5 (ENSACCG00020007585) #26	CABP1 (ENSACCG00020007562) #27	MLEC (ENSACCG00020007546) #28	UNC119B (ENSACCG00020007538) #29	ACADS (ENSACCG00020007524) #30	SPPL3 (ENSACCG00020007484) #31	HNF1A (ENSACCG00020007465) #33	C12orf43 (ENSACCG00020007455) #34	RNF185 (ENSACCG00020007442)	LIMK2 (ENSACCG00020007422)	PIK3IP1 (ENSACCG00020007404)	PATZ1 (ENSACCG00020007374)	DRG1 (ENSACCG00020007351)	EIF4ENIF1 (ENSACCG00020007310)
Aves	ANCESTRAL SPECIES	19	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.a #22	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133
Neognathae	ANCESTRAL SPECIES	15	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
Galloanserae	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
Phasianidae	ANCESTRAL SPECIES	13	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Japanese quail	MODERN SPECIES	6	RAB35 (ENSCJPG00005014309) #11	GCN1 (ENSCJPG00005013460) #12	RPLP0 (ENSCJPG00005013458) ##13	PXN (ENSCJPG00005013456) #14	SIRT4 (ENSCJPG00005013453) #15	ENSCJPG00005013452 #16	ENSCJPG00005013451 #16	MSI1 (ENSCJPG00005013400) #17	ENSCJPG00005013399 #18	TRIAP1 (ENSCJPG00005013394) #19	GATC (ENSCJPG00005013378) #20	ENSCJPG00005013367 #22	COQ5 (ENSCJPG00005013365) #24	ENSCJPG00005013357 #22	ENSCJPG00005013356 #23	ENSCJPG00005013355 #22	ENSCJPG00005013354 #22	RNF10 (ENSCJPG00005013353) #25	POP5 (ENSCJPG00005013351) #26	CABP1 (ENSCJPG00005013349) #27	MLEC (ENSCJPG00005013348) #28	UNC119B (ENSCJPG00005013347) #29	ACADS (ENSCJPG00005013307) #30	SPPL3 (ENSCJPG00005013306) #31	HNF1A (ENSCJPG00005013300) #33	ENSCJPG00005013298	RNF185 (ENSCJPG00005013294)	LIMK2 (ENSCJPG00005013291)	PIK3IP1 (ENSCJPG00005013285)	PATZ1 (ENSCJPG00005013283)	DRG1 (ENSCJPG00005013279)
Phasianidae_b	ANCESTRAL SPECIES	13	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A.n #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.lb #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296.q	ENSGT00940000153340.B
Chicken	MODERN SPECIES	6	RAB35 (ENSGALG00010020845) #11	GCN1 (ENSGALG00010021435) #12	RPLP0 (ENSGALG00010021427) ##13	PXN (ENSGALG00010021649) #14	SIRT4 (ENSGALG00010021415) #15	PLA2G1B (ENSGALG00010026939) #16	ENSGALG00010021397	MSI1 (ENSGALG00010021383) #17	COX6A1 (ENSGALG00010021315) #18	TRIAP1 (ENSGALG00010021311) #19	GATC (ENSGALG00010021296) #20	ENSGALG00010021278 #23	COQ5 (ENSGALG00010021266) #24	ENSGALG00010021249 #23	DYL1 (ENSGALG00010021243) #22	ENSGALG00010021189 #22	DYL2 (ENSGALG00010021185) #22	RNF10 (ENSGALG00010023102) #25	POP5 (ENSGALG00010023093) #26	CABP5 (ENSGALG00010023019) #27	MLEC (ENSGALG00010026999) #28	UNC119B (ENSGALG00010022933) #29	ACADS (ENSGALG00010022862) #30	SPPL3 (ENSGALG00010022806) #31	HNF1A (ENSGALG00010022741) #33	C12orf43 (ENSGALG00010022718) #34	RNF5 (ENSGALG00010022709)	LIMK2 (ENSGALG00010026980)	PIK3IP1 (ENSGALG00010022695)	PATZ1 (ENSGALG00010022649)	DRG1 (ENSGALG00010022037)
Turkey	MODERN SPECIES	8	LIMA1 (ENSMGAG00000010583)	LARP4 (ENSMGAG00000010598)	DIP2B (ENSMGAG00000010609)	ATF1 (ENSMGAG00000010646)	ENSMGAG00000010659	ENSMGAG00000010667	ENSMGAG00000016054	ENSMGAG00000005282	ENSMGAG00000022175	ENSMGAG00000005352	ENSMGAG00000005402	ENSMGAG00000005560	ENSMGAG00000005511	ENSMGAG00000008666 #25	ENSMGAG00000019123	ENSMGAG00000022883 #22	ENSMGAG00000021181 #22	ENSMGAG00000017798 #22	ENSMGAG00000021900 #23	ENSMGAG00000019160 #22	ENSMGAG00000020783 #23	COX6A1 (ENSMGAG00000018548) #18	ENSMGAG00000008738 #19	GATC (ENSMGAG00000008733) #20	COQ5 (ENSMGAG00000008710) #24	ENSMGAG00000020960 #17	ENSMGAG00000016518 #17	ENSMGAG00000016526 #16	ENSMGAG00000008796 #16	ENSMGAG00000008852 #15	ENSMGAG00000008856 #14
Anatidae	ANCESTRAL SPECIES	39	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00390000000378.d.b.mb.a.b #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.a.a #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00960000190102	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00900000143589	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Pink-footed goose	MODERN SPECIES	83	BICDL1 (ENSABRG00000017730) #10	RAB35 (ENSABRG00000017725) #11	GCN1 (ENSABRG00000016655) #12	RPLP0 (ENSABRG00000016497) ##13	PXN (ENSABRG00000016436) #14	SIRT4 (ENSABRG00000016419) #15	PLA2G1B (ENSABRG00000016412) #16	MSI1 (ENSABRG00000016398) #17	COX6A1 (ENSABRG00000016394) #18	TRIAP1 (ENSABRG00000016389) #19	GATC (ENSABRG00000016378) #20	ENSABRG00000016356 #22	COQ5 (ENSABRG00000016350) #24	ENSABRG00000016344 #22	ENSABRG00000016341 #23	ENSABRG00000016337 #22	ENSABRG00000016323 #22	ENSABRG00000016316	RNF10 (ENSABRG00000016061) #25	POP5 (ENSABRG00000016028) #26	CABP1 (ENSABRG00000016015) #27	MLEC (ENSABRG00000016002) #28	UNC119B (ENSABRG00000015994) #29	ACADS (ENSABRG00000015976) #30	SPPL3 (ENSABRG00000015919) #31	HNF1A (ENSABRG00000015909) #33	C12orf43 (ENSABRG00000015894) #34	RNF185 (ENSABRG00000015886)	LIMK2 (ENSABRG00000015262)	PIK3IP1 (ENSABRG00000015168)	PATZ1 (ENSABRG00000015149)
Duck	MODERN SPECIES	7	RAB35 (ENSAPLG00000029700) #11	GCN1 (ENSAPLG00000010927) #12	RPLP0 (ENSAPLG00000012902) ##13	PXN (ENSAPLG00000012909) #14	ENSAPLG00000023537	SIRT4 (ENSAPLG00000013628) #15	PLA2G1B (ENSAPLG00000013778) #16	ENSAPLG00000030833 #17	ENSAPLG00000023986 #17	COX6A1 (ENSAPLG00000014977) #18	TRIAP1 (ENSAPLG00000027294) #19	GATC (ENSAPLG00000017939) #20	ENSAPLG00000016659 #22	COQ5 (ENSAPLG00000015103) #24	ENSAPLG00000020807 #22	ENSAPLG00000018997 #22	RNF10 (ENSAPLG00000015268) #25	POP5 (ENSAPLG00000015761) #26	ENSAPLG00000025920	CABP1 (ENSAPLG00000015765) #27	ACADS (ENSAPLG00000016040) #30	SPPL3 (ENSAPLG00000001664) #31	HNF1A (ENSAPLG00000002580) #33	C12orf43 (ENSAPLG00000018598) #34	RNF185 (ENSAPLG00000003040)	LIMK2 (ENSAPLG00000003115)	PIK3IP1 (ENSAPLG00000003911)	PATZ1 (ENSAPLG00000003934)	DRG1 (ENSAPLG00000004250)	EIF4ENIF1 (ENSAPLG00000004503)	PISD (ENSAPLG00000020568)
Neognathae_b	ANCESTRAL SPECIES	159																ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22
Neognathae_c	ANCESTRAL SPECIES	16	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839.p ##13	ENSGT00940000158897.l #14	ENSGT00940000158891 #15	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT01100000263696	ENSGT00390000000378.d.b.mb.a #22	ENSGT00390000001654 #24	ENSGT00390000000378.d.b.mb.b.b #22	ENSGT00390000000378.d.b.mb.b.a #22	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Golden eagle	MODERN SPECIES	25	CIT (ENSACCG00020008033) #9	BICDL1 (ENSACCG00020007860) #10	RAB35 (ENSACCG00020007842) #11	GCN1 (ENSACCG00020007815) #12	RPLP0 (ENSACCG00020007783) ##13	ENSACCG00020007770	SIRT4 (ENSACCG00020007745) #15	PLA2G1B (ENSACCG00020007737) #16	MSI1 (ENSACCG00020007708) #17	COX6A1 (ENSACCG00020007692) #18	TRIAP1 (ENSACCG00020007684) #19	GATC (ENSACCG00020007663) #20	ENSACCG00020007644	COQ5 (ENSACCG00020007634) #24	ENSACCG00020007625 #22	ENSACCG00020007614 #22	ENSACCG00020007607 #22	RNF10 (ENSACCG00020007598) #25	POP5 (ENSACCG00020007585) #26	CABP1 (ENSACCG00020007562) #27	MLEC (ENSACCG00020007546) #28	UNC119B (ENSACCG00020007538) #29	ACADS (ENSACCG00020007524) #30	SPPL3 (ENSACCG00020007484) #31	HNF1A (ENSACCG00020007465) #33	C12orf43 (ENSACCG00020007455) #34	RNF185 (ENSACCG00020007442)	LIMK2 (ENSACCG00020007422)	PIK3IP1 (ENSACCG00020007404)	PATZ1 (ENSACCG00020007374)	DRG1 (ENSACCG00020007351)
African ostrich	MODERN SPECIES	1054	PRKAB1 (ENSSCUG00000019005)	CIT (ENSSCUG00000019004) #9	ENSSCUG00000019003	RAB35 (ENSSCUG00000019002) #11	GCN1 (ENSSCUG00000018987) #12	RPLP0 (ENSSCUG00000018968) ##13	PXN (ENSSCUG00000018966) #14	SIRT4 (ENSSCUG00000018959) #15	ENSSCUG00000018957	ENSSCUG00000018955	PLA2G1B (ENSSCUG00000018954) #16	MSI1 (ENSSCUG00000018952) #17	COX6A1 (ENSSCUG00000018948) #18	GATC (ENSSCUG00000018944) #20	COQ5 (ENSSCUG00000018943) #24	ENSSCUG00000018942 #22	ENSSCUG00000018941 #22	ENSSCUG00000018940 #23	RNF10 (ENSSCUG00000018939) #25	CABP1 (ENSSCUG00000018938) #27	MLEC (ENSSCUG00000018937) #28	UNC119B (ENSSCUG00000018936) #29	ACADS (ENSSCUG00000018935) #30	SPPL3 (ENSSCUG00000018934) #31	HNF1A (ENSSCUG00000018933) #33	C12orf43 (ENSSCUG00000018932) #34	RNF185 (ENSSCUG00000018931)	LIMK2 (ENSSCUG00000018930)	PIK3IP1 (ENSSCUG00000018928)	PATZ1 (ENSSCUG00000018927)	DRG1 (ENSSCUG00000018926)
Lepidosauria	ANCESTRAL SPECIES	13	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT01020000230351.F ##37	ENSGT00940000153899.b.a	ENSGT00940000160448	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
tuatara	MODERN SPECIES	188	ENSSPUG00000015968	SCARF2 (ENSSPUG00000015910)	ENSSPUG00000015895	SLC7A4 (ENSSPUG00000015885)	ENSSPUG00000015879 ##37	ENSSPUG00000015871	ENSSPUG00000015819	SIRT4 (ENSSPUG00000015797) #15	ENSSPUG00000015783	PLA2G1B (ENSSPUG00000015775) #16	MSI1 (ENSSPUG00000015741) #17	COX6A1 (ENSSPUG00000015718) #18	TRIAP1 (ENSSPUG00000015707) #19	GATC (ENSSPUG00000015693) #20	SRSF9 (ENSSPUG00000015680) #21	DYNLL1 (ENSSPUG00000015673) #22	COQ5 (ENSSPUG00000015661) #24	RNF10 (ENSSPUG00000015562) #25	POP5 (ENSSPUG00000015531) #26	CABP1 (ENSSPUG00000015451) #27	MLEC (ENSSPUG00000015428) #28	UNC119B (ENSSPUG00000015419) #29	ACADS (ENSSPUG00000015406) #30	SPPL3 (ENSSPUG00000015380) #31	HNF1A (ENSSPUG00000015359) #33	C12orf43 (ENSSPUG00000015354) #34	RNF185 (ENSSPUG00000015343)	LIMK2 (ENSSPUG00000015329)	PIK3IP1 (ENSSPUG00000015323)	PATZ1 (ENSSPUG00000015298)	DRG1 (ENSSPUG00000015278)
Episquamata	ANCESTRAL SPECIES	10	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT01020000230351.F ##37	ENSGT00940000153899.b.a	ENSGT00940000160448	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296
Laterata	ANCESTRAL SPECIES	12	ENSGT00950000183101.b	ENSGT00390000017663	ENSGT00940000154637	ENSGT00940000154297.B	ENSGT01020000230351.F ##37	ENSGT00940000153899.b.a	ENSGT00940000160448	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00940000154885.A #16	ENSGT00940000156515.c #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Common wall lizard	MODERN SPECIES	7	ENSPMRG00000016879	AIFM3 (ENSPMRG00000016885)	SIRT4 (ENSPMRG00000016899) #15	ENSPMRG00000016903	ENSPMRG00000016908	PLA2G1B (ENSPMRG00000016918) #16	ENSPMRG00000016920 #17	ENSPMRG00000016928 #17	ENSPMRG00000016934 #18	TRIAP1 (ENSPMRG00000016937) #19	ENSPMRG00000016939	ENSPMRG00000016945	ENSPMRG00000016948	SRSF9 (ENSPMRG00000016955) #21	ENSPMRG00000016959 #23	DYNLL1 (ENSPMRG00000016961) #22	COQ5 (ENSPMRG00000016967) #24	RNF10 (ENSPMRG00000016978) #25	POP5 (ENSPMRG00000016983) #26	CABP1 (ENSPMRG00000016988) #27	MLEC (ENSPMRG00000016994) #28	UNC119B (ENSPMRG00000016998) #29	ACADS (ENSPMRG00000017008) #30	SPPL3 (ENSPMRG00000017016) #31	HNF1A (ENSPMRG00000017023) #33	C12orf43 (ENSPMRG00000017038) #34	RNF185 (ENSPMRG00000017046)	LIMK2 (ENSPMRG00000017054)	PIK3IP1 (ENSPMRG00000017069)	ENSPMRG00000017075	PATZ1 (ENSPMRG00000017081)
Argentine black and white tegu	MODERN SPECIES	41	ENSSMRG00000005284	ENSSMRG00000005287	SLC7A4 (ENSSMRG00000005290)	LRRC74B (ENSSMRG00000005294)	P2RX6 (ENSSMRG00000005302) ##37	ENSSMRG00000005335	AIFM3 (ENSSMRG00000005338)	SIRT4 (ENSSMRG00000005351) #15	ENSSMRG00000005352	ENSSMRG00000005564	MSI1 (ENSSMRG00000005606) #17	ENSSMRG00000005618 #18	TRIAP1 (ENSSMRG00000005620) #19	GATC (ENSSMRG00000005624) #20	SRSF9 (ENSSMRG00000005625) #21	DYNLL1 (ENSSMRG00000005630) #22	COQ5 (ENSSMRG00000005633) #24	RNF10 (ENSSMRG00000005636) #25	POP5 (ENSSMRG00000005639) #26	CABP1 (ENSSMRG00000005642) #27	MLEC (ENSSMRG00000005644) #28	UNC119B (ENSSMRG00000005645) #29	ACADS (ENSSMRG00000005665) #30	SPPL3 (ENSSMRG00000005670) #31	ENSSMRG00000005671 ##33	RTN4R (ENSSMRG00000005672)	PXMP2 (ENSSMRG00000005684)	POLE (ENSSMRG00000005701)	P2RX2 (ENSSMRG00000006629) ##37	ISG15 (ENSSMRG00000006640)	PLA2G3 (ENSSMRG00000006644)
Toxicofera	ANCESTRAL SPECIES	11	ENSGT00940000154637	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT01020000230351.F ##37	ENSGT00940000153899.b.a	ENSGT00940000160448	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00390000004807	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774
Elapidae	ANCESTRAL SPECIES	34	ENSGT00390000006265.b	ENSGT00950000183101.b	ENSGT00390000017663	ENSGT00940000154637	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT00940000153899.b.a	ENSGT00940000160448.a	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00900000143589	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133.a	ENSGT00390000017774
Indian cobra	MODERN SPECIES	16	RTN4R (ENSNNAG00000017084)	ENSNNAG00000017087	ENSNNAG00000017101	SCARF2 (ENSNNAG00000017126)	ENSNNAG00000017133	SLC7A4 (ENSNNAG00000017136)	LRRC74B (ENSNNAG00000017139)	ENSNNAG00000017147	AIFM3 (ENSNNAG00000017155)	SIRT4 (ENSNNAG00000017182) #15	ENSNNAG00000017211	MSI1 (ENSNNAG00000017246) #17	ENSNNAG00000017255 #18	SRSF9 (ENSNNAG00000017260) #21	GATC (ENSNNAG00000017266) #20	DYNLL1 (ENSNNAG00000017273) #22	COQ5 (ENSNNAG00000017279) #24	RNF10 (ENSNNAG00000017290) #25	POP5 (ENSNNAG00000017302) #26	CABP1 (ENSNNAG00000017308) #27	ENSNNAG00000017314	MLEC (ENSNNAG00000017317) #28	UNC119B (ENSNNAG00000017321) #29	ACADS (ENSNNAG00000017329) #30	SPPL3 (ENSNNAG00000017336) #31	HNF1A (ENSNNAG00000017349) #33	ENSNNAG00000017380	RNF185 (ENSNNAG00000017392)	LIMK2 (ENSNNAG00000017431)	PIK3IP1 (ENSNNAG00000017569)	PATZ1 (ENSNNAG00000017576)
Elapidae_a	ANCESTRAL SPECIES	63	ENSGT00390000006265.b	ENSGT00950000183101.b	ENSGT00390000017663	ENSGT00940000154637	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT00940000153899.b.a	ENSGT00940000160448.a	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00940000156515 #17	ENSGT00940000154612 #18	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133.a	ENSGT00390000017774	ENSGT00940000159296
Acanthophiinae	ANCESTRAL SPECIES	60	ENSGT00940000160711	ENSGT00390000006265.b	ENSGT00950000183101.b	ENSGT00390000017663	ENSGT00940000154637	ENSGT00940000173122	ENSGT00940000154297.B	ENSGT00940000153899.b.a	ENSGT00940000160448.a	ENSGT00940000158891 #15	ENSGT00940000160097.d	ENSGT00940000156515 #17	ENSGT00940000162087 #19	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00390000014595.b #29	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.a #33	ENSGT00390000014107.a.a	ENSGT00940000159133.a	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B
Mainland tiger snake	MODERN SPECIES	390												ENSNSUG00000000108 #18	TRIAP1 (ENSNSUG00000000089) #19	GATC (ENSNSUG00000019418) #20	SRSF9 (ENSNSUG00000019417) #21	DYNLL1 (ENSNSUG00000019416) #22	COQ5 (ENSNSUG00000019415) #24	RNF10 (ENSNSUG00000019414) #25	POP5 (ENSNSUG00000019413) #26	CABP1 (ENSNSUG00000019412) #27	MLEC (ENSNSUG00000019411) #28	UNC119B (ENSNSUG00000019410) #29	ACADS (ENSNSUG00000019409) #30	SPPL3 (ENSNSUG00000019407) #31
Eastern brown snake	MODERN SPECIES	90	SCARF2 (ENSPTXG00000011210)	ENSPTXG00000011209	SLC7A4 (ENSPTXG00000011208)	ENSPTXG00000011207	ENSPTXG00000011206	ENSPTXG00000011205	ENSPTXG00000011203	SIRT4 (ENSPTXG00000011202) #15	ENSPTXG00000011201	ENSPTXG00000011199	MSI1 (ENSPTXG00000011148) #17	ENSPTXG00000011146 #18	TRIAP1 (ENSPTXG00000011144) #19	GATC (ENSPTXG00000011143) #20	SRSF9 (ENSPTXG00000011141) #21	DYNLL1 (ENSPTXG00000011140) #22	ENSPTXG00000011138 #23	COQ5 (ENSPTXG00000011137) #24	RNF10 (ENSPTXG00000011135) #25	ENSPTXG00000011134	ENSPTXG00000011133	CABP1 (ENSPTXG00000011132) #27	MLEC (ENSPTXG00000011131) #28	UNC119B (ENSPTXG00000011130) #29	ACADS (ENSPTXG00000011129) #30	SPPL3 (ENSPTXG00000011125) #31	HNF1A (ENSPTXG00000011123) #33	RNF185 (ENSPTXG00000019135)	LIMK2 (ENSPTXG00000019110)	PIK3IP1 (ENSPTXG00000019107)	PATZ1 (ENSPTXG00000019106)
Blue-lipped sea krait	MODERN SPECIES	39												ENSLLTG00000004061 #18	TRIAP1 (ENSLLTG00000004085) #19	GATC (ENSLLTG00000004109) #20	SRSF9 (ENSLLTG00000004127) #21	DYNLL1 (ENSLLTG00000004141) #22	COQ5 (ENSLLTG00000004155) #24
Lizard	DUPLICATION
Lizard	MODERN SPECIES	952								SIRT4 (ENSACAG00000002657) #15	ENSACAG00000002678	ENSACAG00000040315	PLA2G1B (ENSACAG00000002718) #16	MSI1 (ENSACAG00000002762) #17	GATC (ENSACAG00000002868) #20	TRIAP1 (ENSACAG00000002865) #19	SRSF9 (ENSACAG00000002877) #21	ENSACAG00000035311 #22	ENSACAG00000002915 #23	COQ5 (ENSACAG00000002934) #24	RNF10 (ENSACAG00000002995) #25	POP5 (ENSACAG00000003091) #26	CABP1 (ENSACAG00000003096) #27	MLEC (ENSACAG00000003140) #28	UNC119B (ENSACAG00000003157) #29	ENSACAG00000039294	ACADS (ENSACAG00000003186) #30	SPPL3 (ENSACAG00000003264) #31	tbc1d10a (ENSACAG00000044495)	TMEM233 (ENSACAG00000029312)	PRKAB1 (ENSACAG00000003403)	CIT (ENSACAG00000003441) #9	BICDL1 (ENSACAG00000003619) #10
Lizard	MODERN SPECIES		BAG5 (ENSACAG00000010605)	ENSACAG00000043293	ENSACAG00000010630	XRCC3 (ENSACAG00000010735)	ZFYVE21 (ENSACAG00000010763)	PPP1R13B (ENSACAG00000010785)	ENSACAG00000043018	RD3L (ENSACAG00000041921)	TDRD9 (ENSACAG00000010862)	ENSACAG00000024024	ENSACAG00000041293	ENSACAG00000010962	ENSACAG00000042276	KIF26A (ENSACAG00000011013)	TMEM179 (ENSACAG00000041902)	ENSACAG00000035927 #22	INF2 (ENSACAG00000011137)	ENSACAG00000011202	PLD4 (ENSACAG00000011309)	CEP170B (ENSACAG00000011394)	ZBTB42 (ENSACAG00000011451)	ENSACAG00000037867	AKT1 (ENSACAG00000011455)	SIVA1 (ENSACAG00000040990)	ADSS1 (ENSACAG00000011672)	ENSACAG00000025647	ENSACAG00000035107	ENSACAG00000011840	ENSACAG00000011854	PRKCH (ENSACAG00000006398)	HIF1A (ENSACAG00000016205)
Anura	ANCESTRAL SPECIES	4	ENSGT00940000162372	ENSGT00940000155307.b	ENSGT01030000234517.E #9	ENSGT00940000157442 #10	ENSGT00940000158557 #11	ENSGT00940000153612.B #12	ENSGT00390000017839 #13	ENSGT00940000158897 #14	ENSGT00940000158891 #15	ENSGT00940000180342	ENSGT00940000154885.A #16	ENSGT00940000156515 #17	ENSGT00940000163530	ENSGT00390000018351 #20	ENSGT00940000156839 #21	ENSGT00390000000378.d.b #22	ENSGT00390000001654 #24	ENSGT00390000001731 #25	ENSGT00390000012331 #26	ENSGT00940000158555 #27	ENSGT00390000016504 #28	ENSGT00940000158866 #30	ENSGT00940000158101 #31	ENSGT00940000153818.a.b.b ##33	ENSGT00390000010771 #34	ENSGT00390000014107.a.a	ENSGT00940000159133	ENSGT00390000017774	ENSGT00940000159296	ENSGT00940000153340.B	ENSGT00390000012071
Leishan spiny toad	MODERN SPECIES		PXN (ENSLLEG00000000028) #14	ENSLLEG00000000007	SIRT4 (ENSLLEG00000004417) #15	ENSLLEG00000004404	ENSLLEG00000004396	PLA2G1B (ENSLLEG00000004392) #16	ENSLLEG00000004386	MSI1 (ENSLLEG00000004340) #17	ENSLLEG00000004329	ENSLLEG00000004328	ENSLLEG00000004322	GATC (ENSLLEG00000004315) #20	SRSF9 (ENSLLEG00000004303) #21	ENSLLEG00000004288	ENSLLEG00000004283	DYNLL1 (ENSLLEG00000004279) #22	RNF10 (ENSLLEG00000004240) #25	COQ5 (ENSLLEG00000004192) #24	ENSLLEG00000004187	ENSLLEG00000004183	CABP1 (ENSLLEG00000004173) #27	ENSLLEG00000004167	ENSLLEG00000004163	MLEC (ENSLLEG00000004158) #28	ACADS (ENSLLEG00000004150) #30	ENSLLEG00000004142	SPPL3 (ENSLLEG00000004134) #31	ENSLLEG00000004115 ##33	C12orf43 (ENSLLEG00000004103) #34	RNF185 (ENSLLEG00000004096)	ENSLLEG00000004093
Frog	MODERN SPECIES		prkab1 (ENSXETG00000026945)	cit (ENSXETG00000012183) #9	bicdl1 (ENSXETG00000012189) #10	rab35 (ENSXETG00000026943) #11	gcn1 (ENSXETG00000012193) #12	rplp0 (ENSXETG00000026942) #13	pxn (ENSXETG00000012201) #14	hsd11b1l.2 (ENSXETG00000012212)	pla2g1b (ENSXETG00000012207) #16	msi1 (ENSXETG00000012216) #17	ENSXETG00000043315	cox6a1 (ENSXETG00000012222)	triap1 (ENSXETG00000012223)	gatc (ENSXETG00000035179) #20	srsf9 (ENSXETG00000026940) #21	dynll1 (ENSXETG00000007996) #22	coq5 (ENSXETG00000012228) #24	rnf10 (ENSXETG00000012226) #25	pop5 (ENSXETG00000031793) #26	cabp1 (ENSXETG00000034192) #27	mlec (ENSXETG00000048343) #28	acads (ENSXETG00000012275) #30	sppl3 (ENSXETG00000026938) #31	hnf1a (ENSXETG00000012278) ##33	C12orf43 (ENSXETG00000035727) #34	rnf185 (ENSXETG00000039292)	ENSXETG00000045707	limk2 (ENSXETG00000004179)	pik3ip1 (ENSXETG00000004189)	patz1 (ENSXETG00000004190)	fzd3 (ENSXETG00000004191)
Coelacanth	MODERN SPECIES	231	ENSLACG00000018421 #12	ENSLACG00000022575 #12	RPLP0 (ENSLACG00000018411) #13	rpl26 (ENSLACG00000018373)	PXN (ENSLACG00000018399) #14	CTU1 (ENSLACG00000018357)	SIRT4 (ENSLACG00000018352) #15	ENSLACG00000018345	ENSLACG00000018340 #16	PLA2G1B (ENSLACG00000018334) #16	MSI1 (ENSLACG00000018287) #17	ENSLACG00000018258 #18	triap1 (ENSLACG00000018247)	GATC (ENSLACG00000018239) #20	SRSF9 (ENSLACG00000018228) #21	DYNLL1 (ENSLACG00000018220) #22	COQ5 (ENSLACG00000018210) #24	RNF10 (ENSLACG00000018192) #25	POP5 (ENSLACG00000018188) #26	CABP1 (ENSLACG00000018116) #27	MLEC (ENSLACG00000018098) #28	UNC119B (ENSLACG00000018079) #29	ACADS (ENSLACG00000018055) #30	SPPL3 (ENSLACG00000017976) #31	hnf1ba (ENSLACG00000017915) ##33	C12orf43 (ENSLACG00000017895) #34	ENSLACG00000017887	ENSLACG00000017851	RAB36 (ENSLACG00000017799)	GNAZ (ENSLACG00000017616)	RSPH14 (ENSLACG00000017537)
Actinopterygii	ANCESTRAL SPECIES	891																ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23
Neopterygii	ANCESTRAL SPECIES	27	ENSGT00530000064130	ENSGT01020000230354.B.b.a.a	ENSGT00390000008135	ENSGT00510000047059	ENSGT00940000159212.a	ENSGT00940000161894	ENSGT00390000017317	ENSGT00390000012340	ENSGT00600000084481	ENSGT00940000160082	ENSGT00950000182987.c.a.b.b	ENSGT00390000017203	ENSGT00940000155585	ENSGT00390000000378.d.a ##22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000016675	ENSGT00940000153818.a.b.a.b ##33	ENSGT00550000074863	ENSGT00390000010789	ENSGT00940000164527.b	ENSGT00940000156751	ENSGT00940000158628	ENSGT00940000168454	ENSGT00960000189469	ENSGT00940000159297	ENSGT01010000222313.B.a	ENSGT00950000182901	ENSGT00940000159645	ENSGT00940000165122
Spotted gar	MODERN SPECIES	659																ENSLOCG00000008706 #22	tfip11 (ENSLOCG00000008684)	srrd (ENSLOCG00000008675)	ENSLOCG00000008657	tpst2 (ENSLOCG00000008649)	crybb1 (ENSLOCG00000008637)	cryba4 (ENSLOCG00000008625)	msi1a (ENSLOCG00000008618) #17	cox6a2 (ENSLOCG00000008607) #18	SEZ6L (ENSLOCG00000008591)	MYO18B (ENSLOCG00000008574)	selenom (ENSLOCG00000008562)	ENSLOCG00000008548	trafd1 (ENSLOCG00000008523)	CFAP73 (ENSLOCG00000008499)	ddx54 (ENSLOCG00000008485)
Osteoglossocephalai	ANCESTRAL SPECIES	20	ENSGT00940000153849.b	ENSGT00390000009714	ENSGT00390000012195	ENSGT00940000161894	ENSGT00390000017317	ENSGT00390000012340	ENSGT00600000084481	ENSGT00940000160082.a.a	ENSGT00950000182987.c.a.b.b	ENSGT00390000017203	ENSGT00940000155585	ENSGT00390000000378.d.a.p ##22	ENSGT01100000264080	ENSGT00390000000378.d.a.o.b ##22	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT00390000016675	ENSGT00390000000378.d.a.o.a ##22	ENSGT00940000153818.a.b.a.b ##33	ENSGT00550000074863	ENSGT00390000010789	ENSGT00940000164527.b	ENSGT00940000156751	ENSGT00940000158628	ENSGT00940000168454	ENSGT00960000189469	ENSGT00940000159297	ENSGT01010000222313.B.a	ENSGT00950000182901	ENSGT00940000166536
Osteoglossiformes	ANCESTRAL SPECIES	82						ENSGT01030000235069	ENSGT00550000074856.f	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT00390000000378.d.b #22	ENSGT01030000234626.D	ENSGT00940000159527	ENSGT00910000144273	ENSGT00940000166999.A	ENSGT00950000182888.b	ENSGT00940000169174	ENSGT00940000154842.a.a	ENSGT00940000166026	ENSGT00950000183191.b	ENSGT00940000156812	ENSGT00500000044909	ENSGT00940000154089.b	ENSGT00940000156240	ENSGT00940000161620	ENSGT00390000003209
Asian bonytongue	MODERN SPECIES	13	TOP3B (ENSSFOG00015015188)	ENSSFOG00015015252	ydjc (ENSSFOG00015015281)	ENSSFOG00015015292	HIC2 (ENSSFOG00015015304)	PI4KA (ENSSFOG00015015366)	serpind1 (ENSSFOG00015015477)	snap29 (ENSSFOG00015015492)	polb (ENSSFOG00015015567)	enkd1 (ENSSFOG00015015654)	vdac3 (ENSSFOG00015015682)	ikbkb (ENSSFOG00015015783)	PLAT (ENSSFOG00015016201)	CLTCL1 (ENSSFOG00015016343)	SLC25A1 (ENSSFOG00015016457)	dynll1 (ENSSFOG00015025405) #22	ENSSFOG00015016474 #23	GAK (ENSSFOG00015016500)	acaa2 (ENSSFOG00015016555)	rpl6 (ENSSFOG00015016589)	wdr31 (ENSSFOG00015016618)	ENSSFOG00015016639	tor4ab (ENSSFOG00015029751)	ENSSFOG00015027175	ENSSFOG00015016701
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	164	wdr81 (ENSPKIG00000007980)	ENSPKIG00000007905	med31 (ENSPKIG00000007857)	slc47a4 (ENSPKIG00000007807)	ENSPKIG00000007779	ENSPKIG00000007673	ENSPKIG00000007566	txndc17 (ENSPKIG00000007514)	NXN (ENSPKIG00000007485)	glod4 (ENSPKIG00000007451)	ENSPKIG00000007420	BLTP2 (ENSPKIG00000007303)	aldoca (ENSPKIG00000007245)	SRSF1 (ENSPKIG00000007204)	ENSPKIG00000007183	ENSPKIG00000007168 #22	hnf1ba (ENSPKIG00000007120) ##33	SYNRG (ENSPKIG00000007000)	dusp14 (ENSPKIG00000006925)	tada2a (ENSPKIG00000006873)	traf4a (ENSPKIG00000006822)	nek8 (ENSPKIG00000006771)	tlcd1 (ENSPKIG00000006744)	rab34a (ENSPKIG00000006695)	ENSPKIG00000006672	GALNT17 (ENSPKIG00000006634)	CALN1 (ENSPKIG00000006593)	tyw1 (ENSPKIG00000006545)	ENSPKIG00000006512	sbds (ENSPKIG00000006489)	ENSPKIG00000006376
P. kingsleyae	MODERN SPECIES	271	HIC2 (ENSPKIG00000002187)	serpind1 (ENSPKIG00000002156)	PI4KA (ENSPKIG00000002055)	snap29 (ENSPKIG00000002004)	ENSPKIG00000001980	SLC25A1 (ENSPKIG00000001918)	ENSPKIG00000001730	ENSPKIG00000001659	PLAT (ENSPKIG00000001615)	ikbkb (ENSPKIG00000001536)	ENSPKIG00000001500	enkd1 (ENSPKIG00000001481)	polb (ENSPKIG00000001456)	ENSPKIG00000001435 #23	rpl6 (ENSPKIG00000001407)	dynll1 (ENSPKIG00000001421) #22	acaa2 (ENSPKIG00000001360)	GAK (ENSPKIG00000001261)	wdr31 (ENSPKIG00000001204)	ENSPKIG00000001180	tor4ab (ENSPKIG00000001168)	zgc:158343 (ENSPKIG00000001153)	ENSPKIG00000001081	ENSPKIG00000001042
Clupeocephala	ANCESTRAL SPECIES	214		ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00940000173670	ENSGT00390000003682	ENSGT00390000000378.d.b #22	ENSGT01100000263696	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000012485.a.a	ENSGT00390000003948	ENSGT00390000012739	ENSGT00390000013777
Otomorpha	ANCESTRAL SPECIES	189	ENSGT00940000154637	ENSGT00390000017663	ENSGT00940000158715	ENSGT00940000160943	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000012485.a.a	ENSGT00390000003948
Otophysi	ANCESTRAL SPECIES	74		ENSGT00390000017663	ENSGT00940000158715.e	ENSGT00940000160943	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000012903	ENSGT00530000065225	ENSGT00940000153877.a.a.a	ENSGT00940000156902.a	ENSGT00940000157207.a.b	ENSGT00450000040324.b	ENSGT00940000156811.a	ENSGT00990000204366	ENSGT00940000155841.c.a	ENSGT00940000163383
Characiphysae	ANCESTRAL SPECIES	316															ENSGT00940000173670	ENSGT00390000000378.d.b #22	ENSGT01100000263696
Characiphysae_b	ANCESTRAL SPECIES	42															ENSGT00940000173670	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000000378.d.a.o.b ##22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000012903	ENSGT00530000065225	ENSGT00940000153877.a.a.a	ENSGT00940000156902.a	ENSGT00940000157207.a.b	ENSGT00450000040324.b	ENSGT00940000156811.a	ENSGT00990000204366	ENSGT00940000155841.c.a
Characoidei	ANCESTRAL SPECIES	59						ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000012903	ENSGT00530000065225	ENSGT00940000153877.a.a.a	ENSGT00940000156902.a	ENSGT00940000157207.a.b	ENSGT00450000040324.b	ENSGT00940000156811.a	ENSGT00990000204366	ENSGT00940000155841.c.a	ENSGT00940000163383	ENSGT00950000183101.a.b.b.a.a
Red-bellied piranha	MODERN SPECIES	86							ENSPNAG00000000243	dgcr6 (ENSPNAG00000000247)	RASAL1 (ENSPNAG00000007511)	DTX1 (ENSPNAG00000000261)	PLAT (ENSPNAG00000007521)	ikbkb (ENSPNAG00000000274)	vdac3 (ENSPNAG00000000281)	enkd1 (ENSPNAG00000007545)	polb (ENSPNAG00000007551)	dynll1 (ENSPNAG00000007553) #22	rpl6 (ENSPNAG00000007557)	acaa2 (ENSPNAG00000000308)	mrpl40 (ENSPNAG00000000310)	si:ch211-51h9.6 (ENSPNAG00000007569)	gle1 (ENSPNAG00000007573)	si:ch211-51h9.7 (ENSPNAG00000000315)	seta (ENSPNAG00000007583)	slc25a25a (ENSPNAG00000000320)	naif1 (ENSPNAG00000000324)	EEIG1 (ENSPNAG00000007595)	ENSPNAG00000007598	sh3glb2a (ENSPNAG00000007607)	ENSPNAG00000000342	ENSPNAG00000007621	lhx2b (ENSPNAG00000000355)
Mexicana tetra	MODERN SPECIES	21	pi4kab (ENSAMXG00000015625)	serpind1 (ENSAMXG00000015691)	snap29 (ENSAMXG00000029405)	ENSAMXG00000039755	SLC25A1 (ENSAMXG00000015817)	ENSAMXG00000036289	ENSAMXG00000013138	ENSAMXG00000033070	ENSAMXG00000031840	PLAT (ENSAMXG00000013113)	ikbkb (ENSAMXG00000013072)	vdac3 (ENSAMXG00000013051)	enkd1 (ENSAMXG00000013036)	polb (ENSAMXG00000012972)	ENSAMXG00000024374 #23	dynll1 (ENSAMXG00000034358) #22	rpl6 (ENSAMXG00000012854)	acaa2 (ENSAMXG00000035892)	si:ch211-51h9.6 (ENSAMXG00000033396)	mrpl40 (ENSAMXG00000029691)	gle1 (ENSAMXG00000012542)	si:ch211-51h9.7 (ENSAMXG00000012480)	seta (ENSAMXG00000010484)	zdhhc12a (ENSAMXG00000012374)	slc25a25a (ENSAMXG00000042479)	naif1 (ENSAMXG00000039603)	EEIG1 (ENSAMXG00000012124)	ENSAMXG00000029716	sh3glb2a (ENSAMXG00000012086)	ENSAMXG00000036574	ENSAMXG00000038206
Electric eel	MODERN SPECIES	870															ENSEEEG00000015211	dynll1 (ENSEEEG00000015208) #22	ENSEEEG00000015204 #23	rpl6 (ENSEEEG00000015200)	acaa2 (ENSEEEG00000015176)	mrpl40 (ENSEEEG00000015175)	si:ch211-51h9.6 (ENSEEEG00000015174)	gle1 (ENSEEEG00000015094)	seta (ENSEEEG00000015089)	zdhhc12a (ENSEEEG00000015088)	ENSEEEG00000014829	naif1 (ENSEEEG00000014811)	EEIG1 (ENSEEEG00000014807)	ENSEEEG00000014806	sh3glb2a (ENSEEEG00000014803)	ENSEEEG00000014802	ENSEEEG00000014801
Channel catfish	MODERN SPECIES	24	GCN1 (ENSIPUG00000012886) #12	serpind1 (ENSIPUG00000013123)	naif1 (ENSIPUG00000013136)	seta (ENSIPUG00000013161)	gle1 (ENSIPUG00000013197)	ENSIPUG00000013286	ENSIPUG00000013305	ENSIPUG00000013360	lhx2b (ENSIPUG00000018065)	ENSIPUG00000018073	snap29 (ENSIPUG00000019884)	GAPVD1 (ENSIPUG00000019951)	Vgll4 (ENSIPUG00000020201)	DGCR6 (ENSIPUG00000020222)	rpl6 (ENSIPUG00000020213)	dynll1 (ENSIPUG00000020243) #22	ENSIPUG00000020259	acaa2 (ENSIPUG00000020272)	Mrpl40 (ENSIPUG00000020288)	vsig8b (ENSIPUG00000020301)	snrnp200 (ENSIPUG00000020309)	ENSIPUG00000020358	ENSIPUG00000020477	ENSIPUG00000020484	ENSIPUG00000020499	mfn2 (ENSIPUG00000020537)	prdm16 (ENSIPUG00000020607)	TPRG1L (ENSIPUG00000020672)	wrap73 (ENSIPUG00000020690)	tp73 (ENSIPUG00000020714)	rer1 (ENSIPUG00000020737)
Cyprinoidei	ANCESTRAL SPECIES	32	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000155715	ENSGT00940000158584	ENSGT00940000164759	ENSGT00940000165215.b	ENSGT00940000165215.a	ENSGT00390000011408	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01030000236969	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000012903	ENSGT00530000065225	ENSGT00940000153877.a.a.a	ENSGT00940000156902.a	ENSGT00940000157207.a.b	ENSGT00450000040324.b	ENSGT00940000156811.a	ENSGT00990000204366	ENSGT00940000155841.c.a	ENSGT00940000163383
Cyprininae	ANCESTRAL SPECIES	246	ENSGT00940000158715.e.b	ENSGT00940000160943.c.b	ENSGT01030000235233.a.b.a	ENSGT00940000158664.h	ENSGT00950000182843.a.b.l.a	ENSGT00390000008325.a.a	ENSGT00550000074856.c.b.a	ENSGT00950000183166.a.b	ENSGT00940000155715.tb.a	ENSGT00940000158930.n.b	ENSGT00950000182937.A.b.e	ENSGT00950000182869.e.b.g.a	ENSGT00940000156918.c	ENSGT01030000236969.a	ENSGT00940000173670	ENSGT00390000000378.d.b #22	ENSGT00390000003682.a.a	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000012903.d	ENSGT00530000065225	ENSGT00940000157207.a.b.b	ENSGT00450000040324.b.j.a	ENSGT00940000156811.a.a	ENSGT00940000155841.c.a.a.b	ENSGT00940000158540.q.b	ENSGT00940000164360.A.e
Goldfish	MODERN SPECIES	48	plekha2 (ENSCARG00000010052)	ENSCARG00000009988	unc45b (ENSCARG00000009965)	ENSCARG00000009958	pip5k1bb (ENSCARG00000009903)	fxn (ENSCARG00000009895)	ENSCARG00000009888	ENSCARG00000009883	ENSCARG00000009882	PLAT (ENSCARG00000009854)	ikbkb (ENSCARG00000009718)	vdac3 (ENSCARG00000009664)	polb (ENSCARG00000009643)	ENSCARG00000009635	ENSCARG00000009630	dynll1 (ENSCARG00000009626) #22	rpl6 (ENSCARG00000009621)	acaa2 (ENSCARG00000009205)	si:ch211-51h9.6 (ENSCARG00000009192)	gle1 (ENSCARG00000008498)	seta (ENSCARG00000008460)	slc25a25a (ENSCARG00000008110)	naif1 (ENSCARG00000008090)	EEIG1 (ENSCARG00000008042)	sh3glb2a (ENSCARG00000007776)	lhx2b (ENSCARG00000007753)	ENSCARG00000007736	ENSCARG00000007726	ctu1 (ENSCARG00000007715)	PXN (ENSCARG00000007618) #14	GCN1 (ENSCARG00000006341) #12
Cyprininae_a	ANCESTRAL SPECIES	109	ENSGT00940000160943.c.b	ENSGT01030000235233.a.b.a	ENSGT00550000074798.a.b.i	ENSGT00940000158664.h	ENSGT00950000182843.a.b.l.a	ENSGT00390000008325.a.a	ENSGT00550000074856.c.b.a	ENSGT00950000183166.a.b.d	ENSGT00940000155715.tb.a	ENSGT00940000158930.n.b	ENSGT00950000182937.A.b.e	ENSGT00950000182869.e.b.g.a.b	ENSGT00940000156918.c	ENSGT01030000236969.a	ENSGT00940000173670	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682.a.b	ENSGT00390000003682.a.a	ENSGT01030000234626.D	ENSGT00390000010239.n	ENSGT00390000002511	ENSGT00390000012903.d	ENSGT00530000065225	ENSGT00940000157207.a.b.b	ENSGT00450000040324.b.j.a	ENSGT00940000156811.a.a	ENSGT00940000155841.c.a.a.b	ENSGT00940000163383.b	ENSGT00940000158540.q.b	ENSGT00940000164360.A.e
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	690							ENSSGRG00000049823	serpind1 (ENSSGRG00000050263)	snap29 (ENSSGRG00000050265)	ENSSGRG00000050266	PLAT (ENSSGRG00000050375)	ikbkb (ENSSGRG00000050385)	vdac3 (ENSSGRG00000050462)	polb (ENSSGRG00000050478)	ENSSGRG00000050579	dynll1 (ENSSGRG00000050618) #22	rpl6 (ENSSGRG00000050628)	acaa2 (ENSSGRG00000050642)	mrpl40 (ENSSGRG00000050799)	si:ch211-51h9.6 (ENSSGRG00000050800)	gle1 (ENSSGRG00000050813)	seta (ENSSGRG00000050880)	slc25a25a (ENSSGRG00000050887)	naif1 (ENSSGRG00000050898)	SLC4A11 (ENSSGRG00000050900)	ENSSGRG00000050902	ENSSGRG00000050903	smyd5 (ENSSGRG00000050910)	nudt22 (ENSSGRG00000051048)	gdf9 (ENSSGRG00000051049)	ENSSGRG00000051051
Golden-line barbel	MODERN SPECIES	706			ENSSGRG00000040259	ENSSGRG00000040264	ENSSGRG00000040280	serpind1 (ENSSGRG00000040311)	snap29 (ENSSGRG00000040313)	ENSSGRG00000040314	ENSSGRG00000040316	ENSSGRG00000040322	PLAT (ENSSGRG00000040328)	ENSSGRG00000040331	vdac3 (ENSSGRG00000040392)	enkd1 (ENSSGRG00000042552)	ENSSGRG00000042556	dynll1 (ENSSGRG00000042558) #22	rpl6 (ENSSGRG00000042577)	mrpl40 (ENSSGRG00000042578)	si:ch211-51h9.6 (ENSSGRG00000042579)	gle1 (ENSSGRG00000042580)	seta (ENSSGRG00000042589)	zdhhc12a (ENSSGRG00000042675)	slc25a25a (ENSSGRG00000042698)	naif1 (ENSSGRG00000043603)	EEIG1 (ENSSGRG00000043604)	ENSSGRG00000043605	sh3glb2a (ENSSGRG00000043606)	ENSSGRG00000043619	CRB2 (ENSSGRG00000043620)	lhx2b (ENSSGRG00000043621)	ENSSGRG00000043622
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	23	dgcr6 (ENSCCRG00000014887)	ENSCCRG00000014877	ENSCCRG00000058770	ENSCCRG00000025946	ENSCCRG00000072944	serpind1 (ENSCCRG00000028695)	snap29 (ENSCCRG00000073907)	ENSCCRG00000028693	ENSCCRG00000055779	ENSCCRG00000038659	ENSCCRG00000030763	PLAT (ENSCCRG00000043504)	ikbkb (ENSCCRG00000043515)	vdac3 (ENSCCRG00000010673)	polb (ENSCCRG00000058760)	dynll1 (ENSCCRG00000054117) #22	ENSCCRG00000056221	rpl6 (ENSCCRG00000022244)	mrpl40 (ENSCCRG00000060930)	si:ch211-51h9.6 (ENSCCRG00000013717)	gle1 (ENSCCRG00000013719)	si:ch211-51h9.7 (ENSCCRG00000055915)	seta (ENSCCRG00000041850)	slc25a25a (ENSCCRG00000017155)	naif1 (ENSCCRG00000017159)	EEIG1 (ENSCCRG00000056154)	ENSCCRG00000034374	sh3glb2a (ENSCCRG00000065904)	ENSCCRG00000055699	lhx2b (ENSCCRG00000017725)	ENSCCRG00000018716
Common carp reference	MODERN SPECIES	17	snap29 (ENSCCRG00000040320)	ENSCCRG00000040326	ENSCCRG00000075402	ENSCCRG00000042865	ENSCCRG00000075520	ENSCCRG00000075364	ENSCCRG00000080115	ENSCCRG00000060729	ENSCCRG00000010466	ikbkb (ENSCCRG00000010485)	vdac3 (ENSCCRG00000062963)	enkd1 (ENSCCRG00000010690)	polb (ENSCCRG00000053825)	ENSCCRG00000073114	ENSCCRG00000013750	dynll1 (ENSCCRG00000013754) #22	ENSCCRG00000059675 #23	rpl6 (ENSCCRG00000039880)	acaa2 (ENSCCRG00000072948)	mrpl40 (ENSCCRG00000039944)	gle1 (ENSCCRG00000013852)	seta (ENSCCRG00000015723)	zdhhc12a (ENSCCRG00000041851)	slc25a25a (ENSCCRG00000080316)	naif1 (ENSCCRG00000015730)	EEIG1 (ENSCCRG00000041864)	ENSCCRG00000041867	sh3glb2a (ENSCCRG00000010610)	ENSCCRG00000055340	ENSCCRG00000049409	ENSCCRG00000081956
Zebrafish	MODERN SPECIES	23	pi4kab (ENSDARG00000062823)	serpind1 (ENSDARG00000021208)	snap29 (ENSDARG00000038518)	ENSDARG00000058658	SLC25A1 (ENSDARG00000080000)	ENSDARG00000091618	ENSDARG00000090607	ENSDARG00000076419	ENSDARG00000095437	PLAT (ENSDARG00000062707)	ikbkb (ENSDARG00000079123)	vdac3 (ENSDARG00000003695)	enkd1 (ENSDARG00000043550)	polb (ENSDARG00000003749)	ENSDARG00000092379	dynll1 (ENSDARG00000058454) #22	rpl6 (ENSDARG00000058451)	acaa2 (ENSDARG00000038881)	mrpl40 (ENSDARG00000043554)	si:ch211-51h9.6 (ENSDARG00000092360)	gle1 (ENSDARG00000043559)	si:ch211-51h9.7 (ENSDARG00000074720)	seta (ENSDARG00000031495)	zdhhc12a (ENSDARG00000076632)	slc25a25a (ENSDARG00000010572)	naif1 (ENSDARG00000062753)	EEIG1 (ENSDARG00000102566)	ENSDARG00000101753	sh3glb2a (ENSDARG00000008983)	ENSDARG00000060081	lhx2b (ENSDARG00000031222)
Clupeiformes	ANCESTRAL SPECIES	174	ENSGT00940000154637	ENSGT00390000017663	ENSGT00940000158715	ENSGT00940000160943	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682.d	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00390000012485.a.a
Atlantic herring	MODERN SPECIES	23	ENSCHAG00000006515	SLC25A1 (ENSCHAG00000006555)	ENSCHAG00000007084	ENSCHAG00000007597	ENSCHAG00000007778	ikbkb (ENSCHAG00000007905)	ENSCHAG00000008547	ENSCHAG00000008555	ENSCHAG00000008634	ENSCHAG00000008657	ENSCHAG00000008666	vdac3 (ENSCHAG00000008746)	enkd1 (ENSCHAG00000009318)	polb (ENSCHAG00000009325)	ENSCHAG00000009591 #23	dynll1 (ENSCHAG00000009605) #22	rpl6 (ENSCHAG00000009629)	acaa2 (ENSCHAG00000009673)	mrpl40 (ENSCHAG00000009884)	si:ch211-51h9.6 (ENSCHAG00000009892)	ufd1l (ENSCHAG00000009921)	cdc45 (ENSCHAG00000010087)	zgc:63587 (ENSCHAG00000011285)	septin5a (ENSCHAG00000011673)	ENSCHAG00000011804	ENSCHAG00000011824	ENSCHAG00000011839	ENSCHAG00000011844	ENSCHAG00000011856	gp1bb (ENSCHAG00000011864)	ENSCHAG00000011870
Denticle herring	MODERN SPECIES	2	snap29 (ENSDCDG00000005158)	serpind1 (ENSDCDG00000005156)	DTX1 (ENSDCDG00000005026)	ENSDCDG00000005013	RASAL1 (ENSDCDG00000005003)	SLC25A1 (ENSDCDG00000004998)	ENSDCDG00000004436	ENSDCDG00000004416	ENSDCDG00000004414	ENSDCDG00000004405	PLAT (ENSDCDG00000004238)	ikbkb (ENSDCDG00000004211)	vdac3 (ENSDCDG00000004187)	enkd1 (ENSDCDG00000004168)	polb (ENSDCDG00000004175)	dynll1 (ENSDCDG00000004165) #22	ENSDCDG00000004163 #23	rpl6 (ENSDCDG00000004161)	acaa2 (ENSDCDG00000003889)	mrpl40 (ENSDCDG00000003876)	si:ch211-51h9.6 (ENSDCDG00000003875)	hip1rb (ENSDCDG00000003747)	rasgef1ba (ENSDCDG00000003667)	prkg2 (ENSDCDG00000003650)	bmp3 (ENSDCDG00000003643)	cfap299 (ENSDCDG00000003642)	fgf5 (ENSDCDG00000003640)	prdm8b (ENSDCDG00000003639)	antxr2a (ENSDCDG00000003631)	paqr3a (ENSDCDG00000003625)	bmp2k (ENSDCDG00000003621)
Euteleosteomorpha	ANCESTRAL SPECIES	177	ENSGT00390000012630.B	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00940000173670	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985
Protacanthopterygii	ANCESTRAL SPECIES	78	ENSGT00950000182940.b.b.e	ENSGT00950000183076.a.b.a	ENSGT01050000244840.A.b.b.a	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b	ENSGT00950000183049.E	ENSGT00940000164012.B	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618.s #23	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00390000009662	ENSGT00940000161769.b.a	ENSGT00940000164668	ENSGT00940000159913.a.a	ENSGT00530000064244.b	ENSGT00550000074985	ENSGT00940000159772.n	ENSGT00940000155355
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	13	ENSGT00940000158782.d.a.e	ENSGT00950000182953.C.c.e	ENSGT00940000158546.k	ENSGT00730000113582	ENSGT00530000064873.b.j	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00950000183049.E.d	ENSGT00550000074856.c.b.f.b.a	ENSGT00550000074856.c.b.f.a	ENSGT00950000183166.a.b.e	ENSGT00940000155715.nb.b	ENSGT00940000158930.e	ENSGT00950000182937.A.b.h	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000156918.i	ENSGT00390000000378.d.b.vb #22	ENSGT00390000003682.e	ENSGT01030000234626.D.c	ENSGT00990000213100	ENSGT00390000002511	ENSGT00390000002408.s	ENSGT00390000009662.h	ENSGT00940000161769.b.a.x.b	ENSGT00940000164668.i	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00940000177458	ENSGT00940000159913.a.a.k.b.b	ENSGT00530000064244.b.f	ENSGT00940000159772.n	ENSGT00940000155355.`b	ENSGT00530000063113.A.r
Salmoninae_a	ANCESTRAL SPECIES	10	ENSGT00940000158782.d.a.e	ENSGT00950000182953.C.c.e	ENSGT00940000158546.k	ENSGT00730000113582.b	ENSGT00530000064873.b.j	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00940000181029	ENSGT00950000183049.E.d	ENSGT00550000074856.c.b.f.a	ENSGT00950000183166.a.b.e	ENSGT00940000155715.nb.b	ENSGT00940000158930.e	ENSGT00950000182937.A.b.h	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000156918.i	ENSGT00390000000378.d.b.vb #22	ENSGT00390000003682.e	ENSGT01030000234626.D.c	ENSGT00390000002511	ENSGT00390000002408.s	ENSGT00390000009662.h	ENSGT00940000161769.b.a.x.b	ENSGT00940000164668.i	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00530000064244.b.f	ENSGT00940000159772.n	ENSGT00940000155355.`b	ENSGT00530000063113.A.r	ENSGT00510000050125.b.b.a	ENSGT00950000183076.a.b.a.c	ENSGT01050000244840.A.b.b.a.c
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00390000004965.a.b	ENSGT00940000158782.d.a.e	ENSGT00950000182953.C.c.e	ENSGT00940000158546.k	ENSGT00730000113582.b	ENSGT00530000064873.b.j	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00940000181029	ENSGT00950000183049.E.d	ENSGT00550000074856.c.b.f.a	ENSGT00950000183166.a.b.e	ENSGT00940000162822	ENSGT00940000158930.e	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000156918.i	ENSGT00390000000378.d.b.vb #22	ENSGT00390000003682.e	ENSGT01030000234626.D.c	ENSGT00390000002511	ENSGT00390000002408.s	ENSGT00390000009662.h	ENSGT00940000161769.b.a.x.b	ENSGT00940000164668.i	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00530000064244.b.f	ENSGT00940000159772.n	ENSGT00940000155355.`b	ENSGT00530000063113.A.r	ENSGT00510000050125.b.b.a	ENSGT01050000244840.A.b.b.a.c	ENSGT00950000183076.a.b.a.c
Oncorhynchus_a	ANCESTRAL SPECIES		ENSGT00390000004965.a.b	ENSGT00940000158782.d.a.e	ENSGT00950000182953.C.c.e	ENSGT00940000158546.k	ENSGT00730000113582.b	ENSGT00530000064873.b.j	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00940000181029	ENSGT00950000183049.E.d	ENSGT00550000074856.c.b.f.a	ENSGT00950000183166.a.b.e	ENSGT00940000162822	ENSGT00940000158930.e	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000156918.i	ENSGT00390000000378.d.b.vb #22	ENSGT00390000003682.e	ENSGT01030000234626.D.c	ENSGT00390000002511	ENSGT00390000002408.s	ENSGT00390000009662.h	ENSGT00940000161769.b.a.x.b	ENSGT00940000164668.i	ENSGT00940000159913.a.a.k.b.a.a	ENSGT00530000064244.b.f	ENSGT00940000159772.n	ENSGT00940000155355.`b	ENSGT00530000063113.A.r	ENSGT00510000050125.b.b.a	ENSGT01050000244840.A.b.b.a.c	ENSGT00950000183076.a.b.a.c
Chinook salmon	MODERN SPECIES	28	FAHD2B (ENSOTSG00005020387)	zgc:152830 (ENSOTSG00005020379)	PCNA (ENSOTSG00005020375)	KCNIP3 (ENSOTSG00005020372)	SLC23A2 (ENSOTSG00005020345)	rassf2a (ENSOTSG00005020342)	ENSOTSG00005020341	prnprs3 (ENSOTSG00005020340)	LETM2 (ENSOTSG00005020337)	ENSOTSG00005020334	ssbp2a (ENSOTSG00005020333)	ENSOTSG00005019722	PLAT (ENSOTSG00005019575)	vdac3 (ENSOTSG00005019564)	polb (ENSOTSG00005019415)	dynll1 (ENSOTSG00005019408) #22	rpl6 (ENSOTSG00005019406)	ENSOTSG00005019403	si:ch211-51h9.6 (ENSOTSG00005019401)	ufd1l (ENSOTSG00005019399)	cdc45 (ENSOTSG00005019387)	cldn5a (ENSOTSG00005019383)	zgc:63587 (ENSOTSG00005019277)	septin5a (ENSOTSG00005019269)	gp1bb (ENSOTSG00005019267)	ENSOTSG00005019266	PLPP5 (ENSOTSG00005019265)	NSD3 (ENSOTSG00005015431)	ergic2 (ENSOTSG00005015406)	ENSOTSG00005015404	F2RL2 (ENSOTSG00005015402)
Coho salmon	MODERN SPECIES	22	zgc:152830 (ENSOKIG00005029470)	PCNA (ENSOKIG00005029428)	ENSOKIG00005029364	SLC23A2 (ENSOKIG00005029129)	RASSF2 (ENSOKIG00005029088)	ENSOKIG00005029077	prnprs3 (ENSOKIG00005029061)	LETM2 (ENSOKIG00005029028)	ENSOKIG00005028998	ENSOKIG00005028365	SLC25A1 (ENSOKIG00005028008)	ENSOKIG00005024875	ENSOKIG00005024664	vdac3 (ENSOKIG00005024644)	polb (ENSOKIG00005024267)	dynll1 (ENSOKIG00005024226) #22	PLAT (ENSOKIG00005024020)	ENSOKIG00005023790	C22orf39 (ENSOKIG00005023705)	ufd1l (ENSOKIG00005023581)	cdc45 (ENSOKIG00005023527)	cldn5a (ENSOKIG00005023513)	zgc:63587 (ENSOKIG00005023019)	septin5a (ENSOKIG00005022836)	ENSOKIG00005022776	septin5a (ENSOKIG00005022688)	ENSOKIG00005022648	PLPP5 (ENSOKIG00005022620)	NSD3 (ENSOKIG00005020763)	ergic2 (ENSOKIG00005020630)	ENSOKIG00005020621
Salmo	ANCESTRAL SPECIES		ENSGT00940000158782.d.a.e	ENSGT00950000182953.C.c.e	ENSGT00940000158546.k	ENSGT00730000113582.b	ENSGT00530000064873.b.j	ENSGT00950000183167.a.b.b.a.g.a	ENSGT00940000181029	ENSGT00950000183049.E.d	ENSGT00550000074856.c.b.f.a	ENSGT00950000183166.a.b.e	ENSGT00940000155715.nb.b	ENSGT00940000158930.e	ENSGT00950000182937.A.b.h	ENSGT00950000182869.e.b.g.a.e	ENSGT00940000156918.i	ENSGT00390000000378.d.b.vb #22	ENSGT00390000003682.e	ENSGT01030000234626.D.c	ENSGT00390000002511	ENSGT00390000002408.s	ENSGT00390000009662.h	ENSGT00940000161769.b.a.x.b	ENSGT00940000164668.i	ENSGT00940000159913.a.a.k.b.b	ENSGT00530000064244.b.f	ENSGT00940000159772.n	ENSGT00940000155355.`b	ENSGT00530000063113.A.r	ENSGT00510000050125.b.b.a	ENSGT00950000183076.a.b.a.c	ENSGT01050000244840.A.b.b.a.c
River trout	MODERN SPECIES	19	KCNIP3 (ENSSTUG00000034725)	SLC23A2 (ENSSTUG00000034813)	rassf2a (ENSSTUG00000034925)	ENSSTUG00000035689	prnprs3 (ENSSTUG00000035692)	LETM2 (ENSSTUG00000035700)	ENSSTUG00000035709	ssbp2a (ENSSTUG00000035787)	SLC25A1 (ENSSTUG00000037225)	ENSSTUG00000037716	ENSSTUG00000037957	PLAT (ENSSTUG00000037975)	ENSSTUG00000038156	vdac3 (ENSSTUG00000038180)	polb (ENSSTUG00000038450)	dynll1 (ENSSTUG00000038523) #22	rpl6 (ENSSTUG00000038540)	ENSSTUG00000038564	ENSSTUG00000038678	si:ch211-51h9.6 (ENSSTUG00000038700)	ufd1l (ENSSTUG00000038723)	cdc45 (ENSSTUG00000038872)	ENSSTUG00000038902	cldn5a (ENSSTUG00000038912)	zgc:63587 (ENSSTUG00000038940)	septin5a (ENSSTUG00000039468)	gp1bb (ENSSTUG00000040223)	PLPP5 (ENSSTUG00000040232)	NSD3 (ENSSTUG00000040279)	ergic2 (ENSSTUG00000042117)	ENSSTUG00000042424
Atlantic salmon	MODERN SPECIES	16	ENSSSAG00000008784	ENSSSAG00000008808	SLC23A2 (ENSSSAG00000009135)	rasf2 (ENSSSAG00000060434)	ENSSSAG00000013522	ENSSSAG00000093826	ENSSSAG00000014312	ENSSSAG00000015367	slc25a1 (ENSSSAG00000041957)	ENSSSAG00000079627	ENSSSAG00000080259	PLAT (ENSSSAG00000042974)	ENSSSAG00000043744	vdac3 (ENSSSAG00000043863)	polb (ENSSSAG00000045460)	dyl1 (ENSSSAG00000046308) #22	rpl6 (ENSSSAG00000046371)	THIM (ENSSSAG00000046443)	si:ch211-51h9.6 (ENSSSAG00000090823)	ufd1l (ENSSSAG00000046858)	cdc45 (ENSSSAG00000047454)	cldn5a (ENSSSAG00000110113)	zgc:63587 (ENSSSAG00000047646)	septin5a (ENSSSAG00000108161)	gp1bb (ENSSSAG00000053815)	ENSSSAG00000118248	ppc1a (ENSSSAG00000053818)	ENSSSAG00000118354	ENSSSAG00000053931	ergi2 (ENSSSAG00000058116)	iqgap2 (ENSSSAG00000058470)
Huchen	MODERN SPECIES	324	zgc:152830 (ENSHHUG00000048492)	PCNA (ENSHHUG00000048383)	ENSHHUG00000048377	SLC23A2 (ENSHHUG00000048372)	rassf2a (ENSHHUG00000048364)	prnprs3 (ENSHHUG00000048361)	LETM2 (ENSHHUG00000048355)	ssbp2a (ENSHHUG00000048088)	SLC25A1 (ENSHHUG00000048072)	ENSHHUG00000047740	ENSHHUG00000047718	PLAT (ENSHHUG00000047705)	ENSHHUG00000047688	vdac3 (ENSHHUG00000047551)	polb (ENSHHUG00000047492)	dynll1 (ENSHHUG00000047468) #22	rpl6 (ENSHHUG00000047446)	ENSHHUG00000047338	ENSHHUG00000047321	ENSHHUG00000047320	ufd1l (ENSHHUG00000046980)	cdc45 (ENSHHUG00000046929)	cldn5a (ENSHHUG00000046926)	zgc:63587 (ENSHHUG00000046917)	ENSHHUG00000046912
Salmoninae	ANCESTRAL SPECIES	77	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b.b	ENSGT00950000183049.E.c	ENSGT00940000164012.B	ENSGT00550000074856.c.b.f.b.b	ENSGT00950000183166.a.b.f	ENSGT00940000155715.nb.a	ENSGT00940000162822	ENSGT00940000159038.a.a.d	ENSGT00940000158930.f	ENSGT00950000182937.A.b.g	ENSGT00950000182869.e.b.g.a.f	ENSGT00940000153866.B	ENSGT00940000156918.j	ENSGT00390000001618.s #23	ENSGT00390000000378.d.b.wb #22	ENSGT01100000263793	ENSGT00390000003682.f	ENSGT01030000234626.D.d	ENSGT00390000010239	ENSGT00390000002408.t	ENSGT00390000009662.g	ENSGT00940000161769.b.a.x.a	ENSGT00940000164668.j	ENSGT00940000159913.a.a.k.a	ENSGT00530000064244.b.e	ENSGT00550000074985	ENSGT00940000155355.ab	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00530000064873.b.i	ENSGT00940000158546.l
Huchen	MODERN SPECIES	304		iqgap2 (ENSHHUG00000022687)	f2r (ENSHHUG00000022667)	ENSHHUG00000022663	ssbp2a (ENSHHUG00000022534)	ENSHHUG00000022525	SLC25A1 (ENSHHUG00000022500)	ENSHHUG00000022440	ENSHHUG00000022416	mylpfb (ENSHHUG00000022413)	PLAT (ENSHHUG00000022402)	ikbkb (ENSHHUG00000022121)	vdac3 (ENSHHUG00000021989)	enkd1 (ENSHHUG00000021976)	ENSHHUG00000021972	dynll1 (ENSHHUG00000021966) #22	ENSHHUG00000021962	rpl6 (ENSHHUG00000021934)	ACAA2 (ENSHHUG00000021845)	mrpl40 (ENSHHUG00000021819)	ufd1l (ENSHHUG00000021408)	cdc45 (ENSHHUG00000021337)	cldn5a (ENSHHUG00000021323)	zgc:63587 (ENSHHUG00000021279)	septin5a (ENSHHUG00000021157)	gp1bb (ENSHHUG00000021149)	dhx37 (ENSHHUG00000021069)	ENSHHUG00000020797	ENSHHUG00000020784	ENSHHUG00000020774	ENSHHUG00000020772
Salmoninae_a	ANCESTRAL SPECIES	31	ENSGT00950000183076.a.b.a.d	ENSGT01050000244840.A.b.b.a.d	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b.b	ENSGT00950000183049.E.c	ENSGT00940000164012.B	ENSGT00550000074856.c.b.f.b.b	ENSGT00950000183166.a.b.f	ENSGT00940000162822	ENSGT00940000159038.a.a.d	ENSGT00940000158930.f	ENSGT00950000182937.A.b.g	ENSGT00950000182869.e.b.g.a.f	ENSGT00940000153866.B	ENSGT00940000156918.j	ENSGT00390000000378.d.b.wb #22	ENSGT00390000001618.s #23	ENSGT00390000003682.f	ENSGT01030000234626.D.d	ENSGT00390000010239	ENSGT00390000002408.t	ENSGT00390000009662.g	ENSGT00940000161769.b.a.x.a	ENSGT00940000164668.j	ENSGT00940000159913.a.a.k.a	ENSGT00530000064244.b.e	ENSGT00550000074985	ENSGT00940000155355.ab	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00530000064873.b.i	ENSGT00730000113582.a
Oncorhynchus	ANCESTRAL SPECIES	12	ENSGT01050000244840.A.b.b.a.d	ENSGT00950000183076.a.b.a.d	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b.b	ENSGT00950000183049.E.c	ENSGT00940000164012.B	ENSGT00550000074856.c.b.f.b.b	ENSGT00950000183166.a.b.f	ENSGT00940000159038.a.a.d	ENSGT00940000158930.f	ENSGT00950000182937.A.b.g	ENSGT00950000182869.e.b.g.a.f	ENSGT00940000153866.B	ENSGT00940000156918.j	ENSGT00390000001618.s #23	ENSGT00390000000378.d.b.wb #22	ENSGT00390000003682.f	ENSGT01030000234626.D.d	ENSGT00390000010239	ENSGT00390000002408.t	ENSGT00390000009662.g	ENSGT00940000161769.b.a.x.a	ENSGT00940000164668.j	ENSGT00940000159913.a.a.k.a	ENSGT00530000064244.b.e	ENSGT00550000074985	ENSGT00940000155355.ab	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00730000113582.a	ENSGT00940000158546.l	ENSGT00950000182953.C.c.f
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	2	F2RL2 (ENSOMYG00000022061)	f2r (ENSOMYG00000022067)	ssbp2a (ENSOMYG00000022113)	ENSOMYG00000022133	ENSOMYG00000022163	ENSOMYG00000022635	ENSOMYG00000070104	ENSOMYG00000023571	ENSOMYG00000059437	ENSOMYG00000024299	vdac3 (ENSOMYG00000025689)	ENSOMYG00000053738	enkd1 (ENSOMYG00000025783)	polb (ENSOMYG00000025879)	ENSOMYG00000026022 #23	dynll1 (ENSOMYG00000026005) #22	rpl6 (ENSOMYG00000026034)	mrpl40 (ENSOMYG00000026452)	ufd1l (ENSOMYG00000026638)	cdc45 (ENSOMYG00000027207)	cldn5a (ENSOMYG00000012357)	zgc:63587 (ENSOMYG00000012380)	septin5a (ENSOMYG00000012755)	dhx37 (ENSOMYG00000012961)	ENSOMYG00000013620	ENSOMYG00000014468	ENSOMYG00000014476	ENSOMYG00000014534	ENSOMYG00000014787	ENSOMYG00000049246	ENSOMYG00000014984
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000047154	ENSOMYG00000047120	ENSOMYG00000047116	ENSOMYG00000047114	ENSOMYG00000047109	ENSOMYG00000047107	ENSOMYG00000068542	ENSOMYG00000056128	ENSOMYG00000047069	ENSOMYG00000068257	ENSOMYG00000046879	ENSOMYG00000046656	ENSOMYG00000059017	vdac3 (ENSOMYG00000046610)	polb (ENSOMYG00000046563)	dynll1 (ENSOMYG00000046543) #22	rpl6 (ENSOMYG00000046537)	acaa2 (ENSOMYG00000046504)	si:ch211-51h9.6 (ENSOMYG00000026476)	ufd1l (ENSOMYG00000046428)	ENSOMYG00000049749	cldn5a (ENSOMYG00000046403)	zgc:63587 (ENSOMYG00000046400)	septin5a (ENSOMYG00000046286)	gp1bb (ENSOMYG00000046227)	ENSOMYG00000046219	ENSOMYG00000042332	ENSOMYG00000046207	ENSOMYG00000046199	F2RL2 (ENSOMYG00000046194)	iqgap2 (ENSOMYG00000042832)
Oncorhynchus_a	ANCESTRAL SPECIES	15	ENSGT01050000244840.A.b.b.a.d	ENSGT00950000183076.a.b.a.d	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b.b	ENSGT00950000183049.E.c	ENSGT00940000164012.B	ENSGT00550000074856.c.b.e	ENSGT00950000183166.a.b.f	ENSGT00940000159038.a.a.d	ENSGT00940000158930.f	ENSGT00950000182937.A.b.g	ENSGT00950000182937.A.b.h	ENSGT00950000182869.e.b.g.a.f	ENSGT00940000153866.B	ENSGT00940000156918.j	ENSGT00390000000378.d.b.wb #22	ENSGT00390000001618.s #23	ENSGT00390000003682.f	ENSGT01030000234626.D.d	ENSGT00390000010239	ENSGT00390000002408.t	ENSGT00390000009662.g	ENSGT00940000161769.b.a.x.a	ENSGT00940000164668.j	ENSGT00940000159913.a.a.k.a	ENSGT00530000064244.b.e	ENSGT00550000074985	ENSGT00940000155355.ab	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00730000113582.a	ENSGT00940000158546.l
Chinook salmon	MODERN SPECIES	3	SLC25A1 (ENSOTSG00005011588)	ENSOTSG00005011587	MYL11 (ENSOTSG00005011585)	PLAT (ENSOTSG00005011584)	ikbkb (ENSOTSG00005011560)	ENSOTSG00005011554	fstl1b (ENSOTSG00005011162)	LRRC58 (ENSOTSG00005011160)	GPR156 (ENSOTSG00005011159)	ENSOTSG00005011158	ENSOTSG00005011157	vdac3 (ENSOTSG00005011150)	enkd1 (ENSOTSG00005011148)	ENSOTSG00005011147	ENSOTSG00005011144 #23	dynll1 (ENSOTSG00005011141) #22	rpl6 (ENSOTSG00005011140)	ACAA2 (ENSOTSG00005011131)	mrpl40 (ENSOTSG00005011128)	ufd1l (ENSOTSG00005010461)	cdc45 (ENSOTSG00005010438)	cldn5a (ENSOTSG00005010436)	ENSOTSG00005010435	septin5a (ENSOTSG00005009975)	gp1bb (ENSOTSG00005009971)	dhx37 (ENSOTSG00005009966)	ENSOTSG00005006590	ENSOTSG00005006580	ENSOTSG00005006579	rassf2a (ENSOTSG00005006573)	zgc:63587 (ENSOTSG00005006569)
Coho salmon	MODERN SPECIES	28	POLK (ENSOKIG00005043189)	ANKDD1B (ENSOKIG00005043163)	sv2ca (ENSOKIG00005043125)	F2RL2 (ENSOKIG00005043111)	iqgap2 (ENSOKIG00005033003)	f2r (ENSOKIG00005032517)	ssbp2a (ENSOKIG00005032358)	ENSOKIG00005032326	SLC25A1 (ENSOKIG00005032108)	ENSOKIG00005031734	MYL11 (ENSOKIG00005031681)	PLAT (ENSOKIG00005031157)	ikbkb (ENSOKIG00005031084)	enkd1 (ENSOKIG00005031069)	polb (ENSOKIG00005031009)	dynll1 (ENSOKIG00005030993) #22	ENSOKIG00005030971 #23	ENSOKIG00005021362	ACAA2 (ENSOKIG00005021234)	mrpl40 (ENSOKIG00005021192)	ufd1l (ENSOKIG00005020942)	cdc45 (ENSOKIG00005020780)	cldn5a (ENSOKIG00005020765)	septin5a (ENSOKIG00005020479)	ENSOKIG00005020434	gp1bb (ENSOKIG00005020429)	dhx37 (ENSOKIG00005020346)	ENSOKIG00005019127	ENSOKIG00005019018	ENSOKIG00005019013	rassf2a (ENSOKIG00005018913)
Salmo	ANCESTRAL SPECIES	19	ENSGT00950000183076.a.b.a.d	ENSGT01050000244840.A.b.b.a.d	ENSGT01050000244840.A.a.b.e	ENSGT00510000050125.b.b.b	ENSGT00950000183049.E.c	ENSGT00940000164012.B	ENSGT00550000074856.c.b.f.b.b	ENSGT00950000183166.a.b.f	ENSGT00940000162822.c	ENSGT00940000159038.a.a.d	ENSGT00940000158930.f	ENSGT00950000182937.A.b.g	ENSGT00950000182869.e.b.g.a.f	ENSGT00940000153866.B	ENSGT00940000156918.j	ENSGT00390000000378.d.b.wb #22	ENSGT00390000001618.s #23	ENSGT00390000003682.f	ENSGT01030000234626.D.d	ENSGT00390000010239	ENSGT00390000002408.t	ENSGT00390000009662.g	ENSGT00940000161769.b.a.x.a	ENSGT00940000164668.j	ENSGT00940000159913.a.a.k.a	ENSGT00530000064244.b.e	ENSGT00550000074985	ENSGT00940000155355.ab	ENSGT00950000183167.a.b.b.a.g.b	ENSGT00530000064873.b.i	ENSGT00940000158546.l
River trout	MODERN SPECIES	39	f2r (ENSSTUG00000046110)	ENSSTUG00000046112	ssbp2a (ENSSTUG00000046136)	ENSSTUG00000046350	ENSSTUG00000046352	SLC25A1 (ENSSTUG00000046375)	ENSSTUG00000046488	ENSSTUG00000047645	PLAT (ENSSTUG00000047668)	ikbkb (ENSSTUG00000047760)	vdac3 (ENSSTUG00000047951)	ENSSTUG00000047958	ENSSTUG00000047963	enkd1 (ENSSTUG00000047975)	polb (ENSSTUG00000047986)	dynll1 (ENSSTUG00000048021) #22	ENSSTUG00000048026 #23	rpl6 (ENSSTUG00000048032)	ACAA2 (ENSSTUG00000048043)	mrpl40 (ENSSTUG00000048152)	ufd1l (ENSSTUG00000048168)	cdc45 (ENSSTUG00000048528)	cldn5a (ENSSTUG00000048571)	zgc:63587 (ENSSTUG00000048580)	septin5a (ENSSTUG00000048590)	dhx37 (ENSSTUG00000048625)	ENSSTUG00000048701	ENSSTUG00000048892	prnprs3 (ENSSTUG00000048896)	rassf2a (ENSSTUG00000048899)	ENSSTUG00000048922
Atlantic salmon	MODERN SPECIES	12	ENSSSAG00000079344	f2r (ENSSSAG00000079339)	ssbp2a (ENSSSAG00000079361)	ENSSSAG00000079540	ENSSSAG00000091439	ENSSSAG00000118287	ENSSSAG00000042487	ENSSSAG00000116451	ENSSSAG00000080266	ENSSSAG00000080273	ikbkb (ENSSSAG00000045104)	vdac3 (ENSSSAG00000045635)	ENSSSAG00000045940	enkd1 (ENSSSAG00000045950)	polb (ENSSSAG00000045962)	dynll1 (ENSSSAG00000046028) #22	ENSSSAG00000046044 #23	rpl6 (ENSSSAG00000046058)	THIM (ENSSSAG00000046088)	mrpl40 (ENSSSAG00000089945)	ufd1l (ENSSSAG00000046704)	cdc45 (ENSSSAG00000047205)	cldn5a (ENSSSAG00000120089)	zgc:63587 (ENSSSAG00000047321)	septin5a (ENSSSAG00000052786)	gp1bb (ENSSSAG00000084006)	dhx37 (ENSSSAG00000053501)	ENSSSAG00000095888	ENSSSAG00000055534	ENSSSAG00000106188	ENSSSAG00000060254
Northern pike	MODERN SPECIES	12	F2RL2 (ENSELUG00000009878)	iqgap2 (ENSELUG00000009998)	f2r (ENSELUG00000009872)	ENSELUG00000033572	ENSELUG00000027802	ssbp2a (ENSELUG00000009831)	SLC25A1 (ENSELUG00000009778)	CLTCL1 (ENSELUG00000009702)	ENSELUG00000009557	PLAT (ENSELUG00000009537)	ikbkb (ENSELUG00000009472)	vdac3 (ENSELUG00000009417)	enkd1 (ENSELUG00000009383)	polb (ENSELUG00000009370)	ENSELUG00000009356 #23	dynll1 (ENSELUG00000009336) #22	rpl6 (ENSELUG00000009354)	acaa2 (ENSELUG00000009312)	mrpl40 (ENSELUG00000030802)	si:ch211-51h9.6 (ENSELUG00000009233)	ufd1 (ENSELUG00000009207)	cdc45 (ENSELUG00000009130)	cldn5a (ENSELUG00000009084)	zgc:63587 (ENSELUG00000009060)	septin5a (ENSELUG00000009028)	gp1bb (ENSELUG00000009007)	dhx37 (ENSELUG00000008988)	PLPP5 (ENSELUG00000008938)	NSD3 (ENSELUG00000008901)	LETM2 (ENSELUG00000008803)	prnprs3 (ENSELUG00000008789)
Acanthomorphata	ANCESTRAL SPECIES	13	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Cod	MODERN SPECIES	19	ENSGMOG00000027739	anxa1a (ENSGMOG00000006476)	ENSGMOG00000011705	pi4kab (ENSGMOG00000011672)	serpind1 (ENSGMOG00000011703)	snap29 (ENSGMOG00000011666)	ENSGMOG00000024284	ENSGMOG00000011652	ENSGMOG00000011629	ENSGMOG00000033593	ENSGMOG00000011611	ikbkb (ENSGMOG00000011593)	vdac3 (ENSGMOG00000011585)	enkd1 (ENSGMOG00000011577)	polb (ENSGMOG00000011569)	dynll1 (ENSGMOG00000030002) #22	ENSGMOG00000014803	rpl6 (ENSGMOG00000011557)	acaa2 (ENSGMOG00000011548)	mrpl40 (ENSGMOG00000029279)	si:ch211-51h9.6 (ENSGMOG00000011540)	ENSGMOG00000028132	ENSGMOG00000011533	dhx37 (ENSGMOG00000011509)	gp1bb (ENSGMOG00000036581)	septin5a (ENSGMOG00000004350)	zgc:63587 (ENSGMOG00000013563)	cldn5a (ENSGMOG00000020365)	cdc45 (ENSGMOG00000013587)	ENSGMOG00000013605	ENSGMOG00000025212
Euacanthomorphacea	ANCESTRAL SPECIES	14	ENSGT00390000004228	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Pinecone sodierfish	MODERN SPECIES	23	serpind1 (ENSMMDG00005017472)	pi4kab (ENSMMDG00005017158)	snap29 (ENSMMDG00005017086)	ENSMMDG00005017085	SLC25A1 (ENSMMDG00005017083)	CLTCL1 (ENSMMDG00005011311)	PLAT (ENSMMDG00005011138)	ikbkb (ENSMMDG00005011131)	vdac3 (ENSMMDG00005011111)	enkd1 (ENSMMDG00005011106)	ENSMMDG00005011105 #23	rpl6 (ENSMMDG00005011098)	ACAA2 (ENSMMDG00005011088)	enkd1 (ENSMMDG00005011085)	polb (ENSMMDG00005011072)	dynll1 (ENSMMDG00005011046) #22	ACAA2 (ENSMMDG00005010683)	mrpl40 (ENSMMDG00005010673)	si:ch211-51h9.6 (ENSMMDG00005010670)	ufd1l (ENSMMDG00005010639)	dhx37 (ENSMMDG00005010267)	ENSMMDG00005010256	septin5a (ENSMMDG00005010197)	zgc:63587 (ENSMMDG00005008042)	cldn5a (ENSMMDG00005007978)	cdc45 (ENSMMDG00005007932)	plpp5 (ENSMMDG00005007923)	NSD3 (ENSMMDG00005006659)	LETM2 (ENSMMDG00005006635)	prnprs3 (ENSMMDG00005006633)	ENSMMDG00005006631
Percomorphaceae	ANCESTRAL SPECIES	2	ENSGT00390000004228	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Tiger tail seahorse	MODERN SPECIES	67	ENSHCOG00000007095	ENSHCOG00000007144	serpind1 (ENSHCOG00000007153)	ENSHCOG00000007194	snap29 (ENSHCOG00000007224)	ENSHCOG00000007243	ENSHCOG00000007253	SLC25A1 (ENSHCOG00000007258)	CLTCL1 (ENSHCOG00000007371)	PLAT (ENSHCOG00000007503)	ikbkb (ENSHCOG00000007550)	vdac3 (ENSHCOG00000007575)	enkd1 (ENSHCOG00000007583)	polb (ENSHCOG00000007626)	ENSHCOG00000007635 #23	dynll1 (ENSHCOG00000007644) #22	rpl6 (ENSHCOG00000007651)	acaa2 (ENSHCOG00000007671)	ENSHCOG00000007681	ENSHCOG00000007695	ENSHCOG00000007708	pdlim5a (ENSHCOG00000007720)	BMPR1B (ENSHCOG00000007740)	elac1 (ENSHCOG00000007752)	me2 (ENSHCOG00000007780)	mapk4 (ENSHCOG00000007796)	tspan36 (ENSHCOG00000007807)	ENSHCOG00000007815	ENSHCOG00000007823	mpeg1.2 (ENSHCOG00000007828)	prf1.5 (ENSHCOG00000007838)
Percomorphaceae_B	ANCESTRAL SPECIES	7	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00940000173670	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Percomorphaceae_C	ANCESTRAL SPECIES	7	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Eupercaria	ANCESTRAL SPECIES	5	ENSGT00940000155776.b	ENSGT00940000155831.bb	ENSGT00390000004228	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Tetraodontidae	ANCESTRAL SPECIES	12	ENSGT00940000158958	ENSGT00940000156506.a	ENSGT00940000158064	ENSGT00390000010398.B	ENSGT00940000156991.a.b	ENSGT00940000156808	ENSGT00390000012485.a.a	ENSGT00390000003948	ENSGT00390000012739	ENSGT00390000013777	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00950000182787.E.d.e.b	ENSGT00940000161682
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	3	ENSTNIG00000015906	SLC8B1 (ENSTNIG00000001107)	TPCN1 (ENSTNIG00000015907)	ENSTNIG00000015908	plekha2 (ENSTNIG00000015909)	ENSTNIG00000015910	DDHD2 (ENSTNIG00000015911)	ENSTNIG00000015912	srrd (ENSTNIG00000015913)	tfip11 (ENSTNIG00000015914)	thoc5 (ENSTNIG00000015915)	PLAT (ENSTNIG00000015916)	ikbkb (ENSTNIG00000015917)	vdac3 (ENSTNIG00000015918)	polb (ENSTNIG00000015919)	dynll1 (ENSTNIG00000015920) #22	rpl6 (ENSTNIG00000015921)	acaa2 (ENSTNIG00000015922)	ufd1l (ENSTNIG00000015923)	dynll1 (ENSTNIG00000015924) #22	dhx37 (ENSTNIG00000015925)	septin5a (ENSTNIG00000015926)	zgc:63587 (ENSTNIG00000015927)	cldn5a (ENSTNIG00000001355)	cdc45 (ENSTNIG00000015928)	plpp5 (ENSTNIG00000015929)	NSD3 (ENSTNIG00000015930)	LETM2 (ENSTNIG00000015931)	gck (ENSTNIG00000015932)	myl7 (ENSTNIG00000015933)	agpat9l (ENSTNIG00000015934)
Tetraodon	MODERN SPECIES	3	ITGA2 (ENSTNIG00000015938)	paip1 (ENSTNIG00000015937)	fgf10b (ENSTNIG00000015936)	ENSTNIG00000015935	agpat9l (ENSTNIG00000015934)	myl7 (ENSTNIG00000015933)	gck (ENSTNIG00000015932)	LETM2 (ENSTNIG00000015931)	NSD3 (ENSTNIG00000015930)	plpp5 (ENSTNIG00000015929)	cdc45 (ENSTNIG00000015928)	cldn5a (ENSTNIG00000001355)	zgc:63587 (ENSTNIG00000015927)	septin5a (ENSTNIG00000015926)	dhx37 (ENSTNIG00000015925)	dynll1 (ENSTNIG00000015924) #22	ufd1l (ENSTNIG00000015923)	acaa2 (ENSTNIG00000015922)	rpl6 (ENSTNIG00000015921)	dynll1 (ENSTNIG00000015920) #22	polb (ENSTNIG00000015919)	vdac3 (ENSTNIG00000015918)	ikbkb (ENSTNIG00000015917)	PLAT (ENSTNIG00000015916)	thoc5 (ENSTNIG00000015915)	tfip11 (ENSTNIG00000015914)	srrd (ENSTNIG00000015913)	ENSTNIG00000015912	DDHD2 (ENSTNIG00000015911)	ENSTNIG00000015910	plekha2 (ENSTNIG00000015909)
Fugu	MODERN SPECIES	13	SLC8B1 (ENSTRUG00000020034)	TPCN1 (ENSTRUG00000016229)	ENSTRUG00000020883	plekha2 (ENSTRUG00000020848)	ENSTRUG00000023127	DDHD2 (ENSTRUG00000016304)	ENSTRUG00000016322	srrd (ENSTRUG00000016347)	tfip11 (ENSTRUG00000016348)	thoc5 (ENSTRUG00000016363)	PLAT (ENSTRUG00000016380)	ikbkb (ENSTRUG00000016393)	vdac3 (ENSTRUG00000016407)	enkd1 (ENSTRUG00000016411)	polb (ENSTRUG00000016417)	dynll1 (ENSTRUG00000016464) #22	rpl6 (ENSTRUG00000016438)	acaa2 (ENSTRUG00000016446)	mrpl40 (ENSTRUG00000025904)	si:ch211-51h9.6 (ENSTRUG00000031049)	ufd1l (ENSTRUG00000016457)	septin5a (ENSTRUG00000016478)	zgc:63587 (ENSTRUG00000016492)	cldn5a (ENSTRUG00000016497)	cdc45 (ENSTRUG00000016499)	plpp5 (ENSTRUG00000024109)	NSD3 (ENSTRUG00000016530)	LETM2 (ENSTRUG00000016542)	gck (ENSTRUG00000016548)	myl7 (ENSTRUG00000016554)	agpat9l (ENSTRUG00000024175)
Eupecaria_A	ANCESTRAL SPECIES	6	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Ballan wrasse	MODERN SPECIES	207	serpind1 (ENSLBEG00000024431)	ENSLBEG00000024452	snap29 (ENSLBEG00000024476)	ENSLBEG00000024511	SLC25A1 (ENSLBEG00000024542)	CLTCL1 (ENSLBEG00000024587)	ENSLBEG00000024657	ENSLBEG00000024675	PLAT (ENSLBEG00000024742)	ikbkb (ENSLBEG00000024869)	vdac3 (ENSLBEG00000024957)	enkd1 (ENSLBEG00000025001)	polb (ENSLBEG00000025040)	ENSLBEG00000025084 #23	rpl6 (ENSLBEG00000025101)	dynll1 (ENSLBEG00000025118) #22	acaa2 (ENSLBEG00000025150)	mrpl40 (ENSLBEG00000025203)	si:ch211-51h9.6 (ENSLBEG00000025233)	ufd1l (ENSLBEG00000025256)	dhx37 (ENSLBEG00000025303)	gp1bb (ENSLBEG00000025362)	septin5a (ENSLBEG00000025389)	zgc:63587 (ENSLBEG00000025452)	ENSLBEG00000025509	cdc45 (ENSLBEG00000025547)	plpp5 (ENSLBEG00000025641)	NSD3 (ENSLBEG00000025674)	ENSLBEG00000025719
Eupecaria_B	ANCESTRAL SPECIES	6	ENSGT00940000155831.bb	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000010435.A	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Perciformes	ANCESTRAL SPECIES	6	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Cottioidei	ANCESTRAL SPECIES	11	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Lumpfish	MODERN SPECIES	24	ENSCLMG00005008253	PRADC1 (ENSCLMG00005008267)	hic1l (ENSCLMG00005008268)	pi4kab (ENSCLMG00005008279)	serpind1 (ENSCLMG00005009398)	snap29 (ENSCLMG00005009399)	ENSCLMG00005009401	SLC25A1 (ENSCLMG00005009402)	CLTCL1 (ENSCLMG00005009416)	PLAT (ENSCLMG00005012039)	ikbkb (ENSCLMG00005012066)	vdac3 (ENSCLMG00005015089)	ENSCLMG00005015612	polb (ENSCLMG00005015613)	ENSCLMG00005015615 #23	dynll1 (ENSCLMG00005015617) #22	rpl6 (ENSCLMG00005015618)	acaa2 (ENSCLMG00005015620)	mrpl40 (ENSCLMG00005015851)	si:ch211-51h9.6 (ENSCLMG00005015854)	ufd1l (ENSCLMG00005015867)	dhx37 (ENSCLMG00005015998)	gp1bb (ENSCLMG00005016039)	septin5a (ENSCLMG00005016049)	zgc:63587 (ENSCLMG00005016516)	cldn5a (ENSCLMG00005016848)	cdc45 (ENSCLMG00005016855)	plpp5 (ENSCLMG00005016902)	NSD3 (ENSCLMG00005016923)	LETM2 (ENSCLMG00005017430)	ENSCLMG00005017432
Stickleback	MODERN SPECIES	12	PRADC1 (ENSGACG00000004269)	hic1l (ENSGACG00000004268)	serpind1 (ENSGACG00000004263)	pi4kab (ENSGACG00000004240)	snap29 (ENSGACG00000004226)	ENSGACG00000004218	SLC25A1 (ENSGACG00000004212)	CLTCL1 (ENSGACG00000004169)	ENSGACG00000004160	ENSGACG00000004156	PLAT (ENSGACG00000004146)	ikbkb (ENSGACG00000004136)	vdac3 (ENSGACG00000004119)	enkd1 (ENSGACG00000004114)	polb (ENSGACG00000004070)	dynll1 (ENSGACG00000004060) #22	rpl6 (ENSGACG00000004055)	acaa2 (ENSGACG00000003989)	ENSGACG00000003987	si:ch211-51h9.6 (ENSGACG00000003986)	ufd1l (ENSGACG00000003940)	dhx37 (ENSGACG00000003927)	sub1b (ENSGACG00000003912)	npr3 (ENSGACG00000003906)	ENSGACG00000003894	ENSGACG00000003892	golph3a (ENSGACG00000003881)	ENSGACG00000003878	ENSGACG00000003876	isl1a (ENSGACG00000003872)	ABCA2 (ENSGACG00000003853)
Perciformes_a	ANCESTRAL SPECIES	4	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Pike perch	MODERN SPECIES	2	ENSSLUG00000003265	ENSSLUG00000003313	PRADC1 (ENSSLUG00000003419)	hic1l (ENSSLUG00000003424)	pi4kab (ENSSLUG00000003593)	serpind1 (ENSSLUG00000003967)	snap29 (ENSSLUG00000003973)	ENSSLUG00000003975	SLC25A1 (ENSSLUG00000003990)	CLTCL1 (ENSSLUG00000004507)	PLAT (ENSSLUG00000010821)	ikbkb (ENSSLUG00000010875)	vdac3 (ENSSLUG00000011105)	enkd1 (ENSSLUG00000011125)	polb (ENSSLUG00000011132)	dynll1 (ENSSLUG00000011140) #22	ENSSLUG00000011141	rpl6 (ENSSLUG00000011142)	acaa2 (ENSSLUG00000011148)	mrpl40 (ENSSLUG00000011181)	si:ch211-51h9.6 (ENSSLUG00000011186)	ufd1l (ENSSLUG00000011212)	dhx37 (ENSSLUG00000011645)	gp1bb (ENSSLUG00000011709)	septin5a (ENSSLUG00000011717)	zgc:63587 (ENSSLUG00000011777)	cldn5a (ENSSLUG00000012140)	cdc45 (ENSSLUG00000012201)	plpp5 (ENSSLUG00000013664)	NSD3 (ENSSLUG00000013768)	LETM2 (ENSSLUG00000014988)
Channel bull blenny	MODERN SPECIES	23	btf3 (ENSCGOG00000018488)	ENSCGOG00000018486	PRADC1 (ENSCGOG00000018484)	hic1l (ENSCGOG00000018483)	serpind1 (ENSCGOG00000018481)	pi4kab (ENSCGOG00000018273)	snap29 (ENSCGOG00000018265)	ENSCGOG00000018264	SLC25A1 (ENSCGOG00000018092)	CLTCL1 (ENSCGOG00000016630)	PLAT (ENSCGOG00000016495)	ikbkb (ENSCGOG00000014950)	vdac3 (ENSCGOG00000013042)	enkd1 (ENSCGOG00000012937)	polb (ENSCGOG00000012590)	dynll1 (ENSCGOG00000012573) #22	ENSCGOG00000012572 #23	rpl6 (ENSCGOG00000012569)	acaa2 (ENSCGOG00000011980)	mrpl40 (ENSCGOG00000011962)	si:ch211-51h9.6 (ENSCGOG00000011961)	ufd1l (ENSCGOG00000011932)	dhx37 (ENSCGOG00000011636)	gp1bb (ENSCGOG00000011626)	septin5a (ENSCGOG00000009647)	zgc:63587 (ENSCGOG00000008119)	cldn5a (ENSCGOG00000008066)	cdc45 (ENSCGOG00000007662)	plpp5 (ENSCGOG00000007622)	NSD3 (ENSCGOG00000006841)	LETM2 (ENSCGOG00000006804)
Eupecaria_C	ANCESTRAL SPECIES	3	ENSGT00390000004228	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00390000010435.A	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	9	ENSGT00390000004228	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00390000010435.A	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00940000177458	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
European seabass	MODERN SPECIES	13	ENSDLAG00005028735	ENSDLAG00005032387	serpind1 (ENSDLAG00005012478)	pi4kab (ENSDLAG00005011163)	snap29 (ENSDLAG00005011114)	ENSDLAG00005011102	ENSDLAG00005011016	ENSDLAG00005009688	ENSDLAG00005027575	ENSDLAG00005009550	ikbkb (ENSDLAG00005007449)	vdac3 (ENSDLAG00005007063)	enkd1 (ENSDLAG00005007034)	polb (ENSDLAG00005006964)	ENSDLAG00005006941 #23	dynll1 (ENSDLAG00005031507) #22	rpl6 (ENSDLAG00005006917)	acaa2 (ENSDLAG00005006405)	mrpl40 (ENSDLAG00005033180)	ENSDLAG00005006145	dhx37 (ENSDLAG00005006009)	septin5a (ENSDLAG00005005774)	cldn5a (ENSDLAG00005004809)	zgc:63587 (ENSDLAG00005004837)	CDC45 (ENSDLAG00005024889)	plpp5 (ENSDLAG00005026492)	ENSDLAG00005024791	LETM2 (ENSDLAG00005024781)	ENSDLAG00005024779	ENSDLAG00005031241	ENSDLAG00005029815
Large yellow croaker	MODERN SPECIES	2	pdxp (ENSLCRG00005003125)	mrps36 (ENSLCRG00005003119)	PRADC1 (ENSLCRG00005003116)	HIC2 (ENSLCRG00005003115)	serpind1 (ENSLCRG00005003113)	pi4kab (ENSLCRG00005002223)	snap29 (ENSLCRG00005002174)	ENSLCRG00005002170	SLC25A1 (ENSLCRG00005001220)	CLTCL1 (ENSLCRG00005000916)	PLAT (ENSLCRG00005000800)	ikbkb (ENSLCRG00005000532)	vdac3 (ENSLCRG00005000274)	enkd1 (ENSLCRG00005000199)	polb (ENSLCRG00005000177)	dynll1 (ENSLCRG00005000153) #22	ENSLCRG00005000148 #23	rpl6 (ENSLCRG00005000140)	acaa2 (ENSLCRG00005000116)	mrpl40 (ENSLCRG00005000093)	si:ch211-51h9.6 (ENSLCRG00005015563)	ufd1l (ENSLCRG00005015551)	dhx37 (ENSLCRG00005015338)	ENSLCRG00005015334	septin5a (ENSLCRG00005015282)	zgc:63587 (ENSLCRG00005015249)	cldn5a (ENSLCRG00005015240)	cdc45 (ENSLCRG00005015044)	plpp5 (ENSLCRG00005015033)	NSD3 (ENSLCRG00005013518)	LETM2 (ENSLCRG00005013508)
Gilthead seabream	MODERN SPECIES	19	ENSSAUG00010023870	PRADC1 (ENSSAUG00010023873)	hic1l (ENSSAUG00010023875)	pi4kab (ENSSAUG00010023897)	serpind1 (ENSSAUG00010024436)	snap29 (ENSSAUG00010024437)	ENSSAUG00010024438	SLC25A1 (ENSSAUG00010024444)	CLTCL1 (ENSSAUG00010024475)	ENSSAUG00010025184	PLAT (ENSSAUG00010025194)	ikbkb (ENSSAUG00010025211)	vdac3 (ENSSAUG00010025460)	enkd1 (ENSSAUG00010025592)	polb (ENSSAUG00010025593)	dynll1 (ENSSAUG00010025597) #22	ENSSAUG00010025598	rpl6 (ENSSAUG00010025599)	ACAA2 (ENSSAUG00010000353)	mrpl40 (ENSSAUG00010000557)	si:ch211-51h9.6 (ENSSAUG00010000560)	ufd1l (ENSSAUG00010000565)	dhx37 (ENSSAUG00010000600)	gp1bb (ENSSAUG00010000703)	septin5a (ENSSAUG00010000718)	zgc:63587 (ENSSAUG00010000828)	cldn5a (ENSSAUG00010001151)	cdc45 (ENSSAUG00010001163)	plpp5 (ENSSAUG00010001187)	NSD3 (ENSSAUG00010001218)	LETM2 (ENSSAUG00010001942)
Percomorphaceae_D	ANCESTRAL SPECIES	7	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Anabantaria	ANCESTRAL SPECIES	4	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000156835.l.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Anabantoidei	ANCESTRAL SPECIES	4	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Siamese fighting fish	MODERN SPECIES	20	ENSBSLG00000014400	ENSBSLG00000014375	hic1l (ENSBSLG00000014367)	serpind1 (ENSBSLG00000014355)	pi4kab (ENSBSLG00000013900)	snap29 (ENSBSLG00000013879)	ENSBSLG00000013875	SLC25A1 (ENSBSLG00000013686)	CLTCL1 (ENSBSLG00000012713)	ENSBSLG00000012705	PLAT (ENSBSLG00000012684)	ikbkb (ENSBSLG00000012342)	vdac3 (ENSBSLG00000012194)	enkd1 (ENSBSLG00000012120)	polb (ENSBSLG00000012161)	dynll1 (ENSBSLG00000012103) #22	rpl6 (ENSBSLG00000012069)	acaa2 (ENSBSLG00000011561)	mrpl40 (ENSBSLG00000011548)	si:ch211-51h9.6 (ENSBSLG00000011539)	ufd1l (ENSBSLG00000011489)	dhx37 (ENSBSLG00000011431)	gp1bb (ENSBSLG00000011427)	septin5a (ENSBSLG00000011215)	zgc:63587 (ENSBSLG00000010761)	cldn5a (ENSBSLG00000010582)	plpp5 (ENSBSLG00000010262)	NSD3 (ENSBSLG00000008531)	LETM2 (ENSBSLG00000008436)	ENSBSLG00000008404	ENSBSLG00000008394
Climbing perch	MODERN SPECIES	22	ENSATEG00000021246	ENSATEG00000021240	ENSATEG00000021233	serpind1 (ENSATEG00000021178)	pi4kab (ENSATEG00000021117)	snap29 (ENSATEG00000021079)	ENSATEG00000029495	ENSATEG00000021046	ENSATEG00000020957	ENSATEG00000020929	ENSATEG00000020915	ikbkb (ENSATEG00000020886)	vdac3 (ENSATEG00000025440)	enkd1 (ENSATEG00000020824)	polb (ENSATEG00000020803)	dynll1 (ENSATEG00000029579) #22	ENSATEG00000027310 #23	rpl6 (ENSATEG00000025793)	acaa2 (ENSATEG00000020766)	mrpl40 (ENSATEG00000020753)	si:ch211-51h9.6 (ENSATEG00000029168)	ENSATEG00000020712	dhx37 (ENSATEG00000020638)	gp1bb (ENSATEG00000028591)	septin5a (ENSATEG00000020583)	zgc:63587 (ENSATEG00000020519)	cldn5a (ENSATEG00000020491)	cdc45 (ENSATEG00000020433)	plpp5 (ENSATEG00000020352)	ENSATEG00000020222	LETM2 (ENSATEG00000020187)
Zig-zag eel	MODERN SPECIES	23	ENSMAMG00000013398	PRADC1 (ENSMAMG00000024659)	ENSMAMG00000013476	pi4kab (ENSMAMG00000013495)	serpind1 (ENSMAMG00000013633)	snap29 (ENSMAMG00000013707)	ENSMAMG00000013809	ENSMAMG00000013831	ENSMAMG00000013857	ENSMAMG00000014017	ikbkb (ENSMAMG00000014045)	vdac3 (ENSMAMG00000014082)	enkd1 (ENSMAMG00000014116)	polb (ENSMAMG00000014133)	ENSMAMG00000025919 #23	dynll1 (ENSMAMG00000026728) #22	rpl6 (ENSMAMG00000014219)	acaa2 (ENSMAMG00000014229)	mrpl40 (ENSMAMG00000014249)	si:ch211-51h9.6 (ENSMAMG00000014259)	ENSMAMG00000014272	dhx37 (ENSMAMG00000014318)	gp1bb (ENSMAMG00000014408)	septin5a (ENSMAMG00000014426)	zgc:63587 (ENSMAMG00000014467)	cldn5a (ENSMAMG00000026747)	cdc45 (ENSMAMG00000014559)	plpp5 (ENSMAMG00000014619)	ENSMAMG00000014657	LETM2 (ENSMAMG00000014800)	ENSMAMG00000014833
Carangaria	ANCESTRAL SPECIES	9	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00650000094724
Pleuronectoidei	ANCESTRAL SPECIES	8	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b.h	ENSGT00950000183166.a.b.g	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	398	ENSCSEG00000019901	hic1l (ENSCSEG00000019899)	serpind1 (ENSCSEG00000019894)	pi4kab (ENSCSEG00000019881)	ENSCSEG00000019878	snap29 (ENSCSEG00000019875)	ENSCSEG00000019872	SLC25A1 (ENSCSEG00000019860)	ENSCSEG00000019856	CLTCL1 (ENSCSEG00000019849)	PLAT (ENSCSEG00000019822)	ikbkb (ENSCSEG00000019800)	vdac3 (ENSCSEG00000019795)	enkd1 (ENSCSEG00000019787)	polb (ENSCSEG00000019776)	dynll1 (ENSCSEG00000019770) #22	ENSCSEG00000019768 #23	rpl6 (ENSCSEG00000019765)	ACAA2 (ENSCSEG00000019758)	mrpl40 (ENSCSEG00000019750)	si:ch211-51h9.6 (ENSCSEG00000019749)	ufd1l (ENSCSEG00000019744)	tspan7 (ENSCSEG00000019743)	dhx37 (ENSCSEG00000019728)	gp1bb (ENSCSEG00000019724)	septin5a (ENSCSEG00000019641)	zgc:63587 (ENSCSEG00000019626)	cldn5a (ENSCSEG00000019622)	cdc45 (ENSCSEG00000019603)	plpp5 (ENSCSEG00000019594)	NSD3 (ENSCSEG00000019551)
Tongue sole	MODERN SPECIES	397	marveld2b (ENSCSEG00000012007)	oclnb (ENSCSEG00000012015)	zgc:64051 (ENSCSEG00000012032)	araf (ENSCSEG00000012037)	ENSCSEG00000012058	ENSCSEG00000012067	ENSCSEG00000012084	ENSCSEG00000012125	ENSCSEG00000012130	ENSCSEG00000012137	ctsla (ENSCSEG00000012140)	serpind1 (ENSCSEG00000012172)	ENSCSEG00000012177	SLC25A1 (ENSCSEG00000012186)	ENSCSEG00000012227	dynll1 (ENSCSEG00000012258) #22	rpl6 (ENSCSEG00000012238)	ENSCSEG00000012266	ENSCSEG00000012274	mrpl40 (ENSCSEG00000012296)	ENSCSEG00000012299	ENSCSEG00000012303	SET (ENSCSEG00000012321)	ENSCSEG00000012344	TRAF2 (ENSCSEG00000012375)	RABL6 (ENSCSEG00000012430)	cldn26 (ENSCSEG00000012456)	lztr1 (ENSCSEG00000012466)	gal3st1a (ENSCSEG00000012531)	ENSCSEG00000012866	ENSCSEG00000012876
Turbot	DUPLICATION
Turbot	MODERN SPECIES	21	snap29 (ENSSMAG00000006905)	ENSSMAG00000006898	ENSSMAG00000006864	ENSSMAG00000006778	ENSSMAG00000006744	ENSSMAG00000006680	ikbkb (ENSSMAG00000006624)	vdac3 (ENSSMAG00000006594)	enkd1 (ENSSMAG00000006585)	polb (ENSSMAG00000006536)	dynll1 (ENSSMAG00000023229) #22	ENSSMAG00000006531	dynll1 (ENSSMAG00000023697) #22	ENSSMAG00000006417	ENSSMAG00000033617 #23	dynll1 (ENSSMAG00000021875) #22	rpl6 (ENSSMAG00000006381)	acaa2 (ENSSMAG00000006346)	mrpl40 (ENSSMAG00000006340)	si:ch211-51h9.6 (ENSSMAG00000006331)	ENSSMAG00000006297	dhx37 (ENSSMAG00000006189)	gp1bb (ENSSMAG00000006282)	septin5a (ENSSMAG00000006148)	zgc:63587 (ENSSMAG00000006113)	cldn5a (ENSSMAG00000006109)	cdc45 (ENSSMAG00000006027)	plpp5 (ENSSMAG00000006011)	ENSSMAG00000005965	LETM2 (ENSSMAG00000005953)	ENSSMAG00000005949
Turbot	DUPLICATION
Turbot	MODERN SPECIES	21	ENSSMAG00000007076	serpind1 (ENSSMAG00000007015)	pi4kab (ENSSMAG00000006945)	snap29 (ENSSMAG00000006905)	ENSSMAG00000006898	ENSSMAG00000006864	ENSSMAG00000006778	ENSSMAG00000006744	ENSSMAG00000006680	ikbkb (ENSSMAG00000006624)	vdac3 (ENSSMAG00000006594)	enkd1 (ENSSMAG00000006585)	polb (ENSSMAG00000006536)	dynll1 (ENSSMAG00000023229) #22	ENSSMAG00000006531	dynll1 (ENSSMAG00000023697) #22	ENSSMAG00000006417	ENSSMAG00000033617 #23	dynll1 (ENSSMAG00000021875) #22	rpl6 (ENSSMAG00000006381)	acaa2 (ENSSMAG00000006346)	mrpl40 (ENSSMAG00000006340)	si:ch211-51h9.6 (ENSSMAG00000006331)	ENSSMAG00000006297	dhx37 (ENSSMAG00000006189)	gp1bb (ENSSMAG00000006282)	septin5a (ENSSMAG00000006148)	zgc:63587 (ENSSMAG00000006113)	cldn5a (ENSSMAG00000006109)	cdc45 (ENSSMAG00000006027)	plpp5 (ENSSMAG00000006011)
Turbot	MODERN SPECIES	21	ENSSMAG00000007090	ENSSMAG00000023110	ENSSMAG00000007076	serpind1 (ENSSMAG00000007015)	pi4kab (ENSSMAG00000006945)	snap29 (ENSSMAG00000006905)	ENSSMAG00000006898	ENSSMAG00000006864	ENSSMAG00000006778	ENSSMAG00000006744	ENSSMAG00000006680	ikbkb (ENSSMAG00000006624)	vdac3 (ENSSMAG00000006594)	enkd1 (ENSSMAG00000006585)	polb (ENSSMAG00000006536)	dynll1 (ENSSMAG00000023229) #22	ENSSMAG00000006531	dynll1 (ENSSMAG00000023697) #22	ENSSMAG00000006417	ENSSMAG00000033617 #23	dynll1 (ENSSMAG00000021875) #22	rpl6 (ENSSMAG00000006381)	acaa2 (ENSSMAG00000006346)	mrpl40 (ENSSMAG00000006340)	si:ch211-51h9.6 (ENSSMAG00000006331)	ENSSMAG00000006297	dhx37 (ENSSMAG00000006189)	gp1bb (ENSSMAG00000006282)	septin5a (ENSSMAG00000006148)	zgc:63587 (ENSSMAG00000006113)	cldn5a (ENSSMAG00000006109)
Carangaria_A	ANCESTRAL SPECIES	6	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000162822	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000003682.h	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355.cb	ENSGT00650000094724	ENSGT00950000183167.a.b.b.a
Barramundi perch	MODERN SPECIES	9	ENSLCAG00010001380	ENSLCAG00010001390	ENSLCAG00010001398	hic1l (ENSLCAG00010001402)	pi4kab (ENSLCAG00010001524)	serpind1 (ENSLCAG00010001884)	snap29 (ENSLCAG00010001891)	ENSLCAG00010001893	SLC25A1 (ENSLCAG00010001907)	CLTCL1 (ENSLCAG00010002180)	ENSLCAG00010002866	PLAT (ENSLCAG00010002870)	ikbkb (ENSLCAG00010002901)	vdac3 (ENSLCAG00010002979)	enkd1 (ENSLCAG00010002990)	dynll1 (ENSLCAG00010003001) #22	ENSLCAG00010003009 #23	rpl6 (ENSLCAG00010003013)	acaa2 (ENSLCAG00010003019)	mrpl40 (ENSLCAG00010003027)	si:ch211-51h9.6 (ENSLCAG00010003030)	ufd1l (ENSLCAG00010003037)	dhx37 (ENSLCAG00010003086)	gp1bb (ENSLCAG00010003139)	septin5a (ENSLCAG00010003150)	zgc:63587 (ENSLCAG00010003198)	cldn5a (ENSLCAG00010003207)	cdc45 (ENSLCAG00010003255)	plpp5 (ENSLCAG00010003491)	NSD3 (ENSLCAG00010003573)	LETM2 (ENSLCAG00010003769)
Seriola	ANCESTRAL SPECIES	40	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT00390000003682.h	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000013287	ENSGT00390000018226	ENSGT00970000193421.C.a.jc	ENSGT00940000156044	ENSGT00940000154702.b	ENSGT00940000178067.a	ENSGT00940000178067.b	ENSGT00940000155640.a	ENSGT00940000164450.a	ENSGT00390000017970.f.a
Greater amberjack	MODERN SPECIES	175	hic1l (ENSSDUG00000022819)	pi4kab (ENSSDUG00000022824)	serpind1 (ENSSDUG00000022851)	snap29 (ENSSDUG00000022863)	ENSSDUG00000022876	SLC25A1 (ENSSDUG00000022882)	CLTCL1 (ENSSDUG00000022890)	ENSSDUG00000022925	PLAT (ENSSDUG00000022935)	ikbkb (ENSSDUG00000022942)	vdac3 (ENSSDUG00000022952)	enkd1 (ENSSDUG00000022958)	polb (ENSSDUG00000022962)	rpl6 (ENSSDUG00000022976)	ENSSDUG00000022980 #23	dynll1 (ENSSDUG00000022983) #22	acaa2 (ENSSDUG00000022985)	mrpl40 (ENSSDUG00000022994)	si:ch211-51h9.6 (ENSSDUG00000022999)	ENSSDUG00000023001	ENSSDUG00000023006	cdo1 (ENSSDUG00000023015)	AP3S1 (ENSSDUG00000023019)	aacs (ENSSDUG00000023028)	ENSSDUG00000023050	ENSSDUG00000023059	ENSSDUG00000023060	ENSSDUG00000023064	jak2b (ENSSDUG00000023068)	zgc:114041 (ENSSDUG00000023083)	ENSSDUG00000023088
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3029			pi4kab (ENSSLDG00000008549)	serpind1 (ENSSLDG00000008993)	snap29 (ENSSLDG00000009025)	ENSSLDG00000009052	SLC25A1 (ENSSLDG00000009078)	CLTCL1 (ENSSLDG00000009130)	ENSSLDG00000009218	PLAT (ENSSLDG00000009240)	ikbkb (ENSSLDG00000009307)	vdac3 (ENSSLDG00000009373)	enkd1 (ENSSLDG00000009419)	polb (ENSSLDG00000009488)	ENSSLDG00000009544 #23	dynll1 (ENSSLDG00000009562) #22	rpl6 (ENSSLDG00000009577)	ENSSLDG00000009589	acaa2 (ENSSLDG00000009631)	mrpl40 (ENSSLDG00000009671)	si:ch211-51h9.6 (ENSSLDG00000009683)	ENSSLDG00000009708	cdo1 (ENSSLDG00000009729)	AP3S1 (ENSSLDG00000009752)	aacs (ENSSLDG00000009794)	ENSSLDG00000009888	ENSSLDG00000009917	ENSSLDG00000009933	jak2b (ENSSLDG00000009968)	zgc:114041 (ENSSLDG00000010046)	ENSSLDG00000010083
Yellowtail amberjack	MODERN SPECIES	1560																ENSSLDG00000003030 #22	ENSSLDG00000003006
Ovalentaria	ANCESTRAL SPECIES	4	ENSGT00390000010435.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000156835.l.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Ovalentaria_B	ANCESTRAL SPECIES	9	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Cichlidae	ANCESTRAL SPECIES	6	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	11	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	8	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Haplochromini	ANCESTRAL SPECIES	4	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Burton s mouthbrooder	MODERN SPECIES	334	ENSHBUG00000012857	ENSHBUG00000012926	PRADC1 (ENSHBUG00000012952)	hic1l (ENSHBUG00000012959)	serpind1 (ENSHBUG00000013043)	pi4kab (ENSHBUG00000013182)	snap29 (ENSHBUG00000013276)	ENSHBUG00000013312	SLC25A1 (ENSHBUG00000013343)	CLTCL1 (ENSHBUG00000013415)	PLAT (ENSHBUG00000013432)	ikbkb (ENSHBUG00000013461)	vdac3 (ENSHBUG00000013494)	enkd1 (ENSHBUG00000013506)	polb (ENSHBUG00000013597)	dynll1 (ENSHBUG00000013614) #22	ENSHBUG00000013629 #23	rpl6 (ENSHBUG00000013655)	acaa2 (ENSHBUG00000013719)	mrpl40 (ENSHBUG00000000404)	si:ch211-51h9.6 (ENSHBUG00000013741)	ufd1l (ENSHBUG00000013791)	dhx37 (ENSHBUG00000013916)	gp1bb (ENSHBUG00000013929)	septin5a (ENSHBUG00000013963)	zgc:63587 (ENSHBUG00000013996)	cldn5a (ENSHBUG00000014015)	cdc45 (ENSHBUG00000014083)	plpp5 (ENSHBUG00000014112)	NSD3 (ENSHBUG00000001030)	LETM2 (ENSHBUG00000014319)
Haplochromini_A	ANCESTRAL SPECIES	4	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
P. nyererei	MODERN SPECIES	377	hic1l (ENSPNYG00000007402)	pi4kab (ENSPNYG00000007420)	serpind1 (ENSPNYG00000007537)	ENSPNYG00000007596	snap29 (ENSPNYG00000007619)	ENSPNYG00000007632	SLC25A1 (ENSPNYG00000007651)	CLTCL1 (ENSPNYG00000007725)	PLAT (ENSPNYG00000007872)	ikbkb (ENSPNYG00000007909)	vdac3 (ENSPNYG00000007979)	enkd1 (ENSPNYG00000008002)	polb (ENSPNYG00000008041)	rpl6 (ENSPNYG00000008108)	ENSPNYG00000008148 #23	dynll1 (ENSPNYG00000008161) #22	acaa2 (ENSPNYG00000008182)	mrpl40 (ENSPNYG00000008216)	si:ch211-51h9.6 (ENSPNYG00000008233)	ufd1l (ENSPNYG00000008251)	dhx37 (ENSPNYG00000008298)	gp1bb (ENSPNYG00000008346)	septin5a (ENSPNYG00000008373)	zgc:63587 (ENSPNYG00000008409)	cldn5a (ENSPNYG00000008448)	cdc45 (ENSPNYG00000008475)	plpp5 (ENSPNYG00000008519)	NSD3 (ENSPNYG00000008559)	LETM2 (ENSPNYG00000008631)	prnprs3 (ENSPNYG00000008655)	ENSPNYG00000008676
Haplochromini_B	ANCESTRAL SPECIES	2	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Zebra mbuna	MODERN SPECIES	1094	ENSMZEG00005010527	ENSMZEG00005010488	PRADC1 (ENSMZEG00005010476)	hic1l (ENSMZEG00005010459)	serpind1 (ENSMZEG00005010423)	pi4kab (ENSMZEG00005010344)	snap29 (ENSMZEG00005010307)	ENSMZEG00005010284	SLC25A1 (ENSMZEG00005010261)	CLTCL1 (ENSMZEG00005010116)	PLAT (ENSMZEG00005010075)	ikbkb (ENSMZEG00005010051)	vdac3 (ENSMZEG00005010040)	enkd1 (ENSMZEG00005010024)	polb (ENSMZEG00005010001)	dynll1 (ENSMZEG00005009988) #22	ENSMZEG00005009980 #23	rpl6 (ENSMZEG00005009924)	acaa2 (ENSMZEG00005009873)	mrpl40 (ENSMZEG00005009853)	si:ch211-51h9.6 (ENSMZEG00005009849)	ufd1l (ENSMZEG00005009839)	dhx37 (ENSMZEG00005009802)	gp1bb (ENSMZEG00005009787)	septin5a (ENSMZEG00005009762)	zgc:63587 (ENSMZEG00005009713)	cldn5a (ENSMZEG00005009692)	cdc45 (ENSMZEG00005009621)	plpp5 (ENSMZEG00005009601)	NSD3 (ENSMZEG00005009554)	LETM2 (ENSMZEG00005009533)
Eastern happy	MODERN SPECIES	3	PRADC1 (ENSACLG00000010221)	ENSACLG00000010227	hic1l (ENSACLG00000010236)	pi4kab (ENSACLG00000010239)	serpind1 (ENSACLG00000010287)	ENSACLG00000010289	snap29 (ENSACLG00000010296)	ENSACLG00000010301	SLC25A1 (ENSACLG00000010310)	CLTCL1 (ENSACLG00000010321)	PLAT (ENSACLG00000010734)	ikbkb (ENSACLG00000010789)	vdac3 (ENSACLG00000010897)	enkd1 (ENSACLG00000010938)	polb (ENSACLG00000010973)	dynll1 (ENSACLG00000011047) #22	rpl6 (ENSACLG00000011054)	acaa2 (ENSACLG00000011075)	mrpl40 (ENSACLG00000011106)	si:ch211-51h9.6 (ENSACLG00000011121)	ufd1l (ENSACLG00000011132)	dhx37 (ENSACLG00000011192)	gp1bb (ENSACLG00000011269)	septin5a (ENSACLG00000011272)	zgc:63587 (ENSACLG00000011287)	cdc45 (ENSACLG00000011365)	plpp5 (ENSACLG00000011390)	NSD3 (ENSACLG00000011405)	LETM2 (ENSACLG00000011580)	ENSACLG00000011586	ENSACLG00000011590
Lyretail cichlid	MODERN SPECIES	306	ENSNBRG00000020628	PRADC1 (ENSNBRG00000020597)	hic1l (ENSNBRG00000020589)	serpind1 (ENSNBRG00000020574)	pi4kab (ENSNBRG00000020474)	snap29 (ENSNBRG00000020461)	ENSNBRG00000020444	SLC25A1 (ENSNBRG00000020414)	CLTCL1 (ENSNBRG00000020329)	PLAT (ENSNBRG00000020229)	ikbkb (ENSNBRG00000019905)	vdac3 (ENSNBRG00000019789)	enkd1 (ENSNBRG00000019766)	polb (ENSNBRG00000019395)	ENSNBRG00000019325	dynll1 (ENSNBRG00000019310) #22	rpl6 (ENSNBRG00000019281)	acaa2 (ENSNBRG00000019229)	ENSNBRG00000019204	dhx37 (ENSNBRG00000019133)	gp1bb (ENSNBRG00000019122)	septin5a (ENSNBRG00000018717)	zgc:63587 (ENSNBRG00000018582)	cdc45 (ENSNBRG00000018525)	plpp5 (ENSNBRG00000018503)	NSD3 (ENSNBRG00000018432)	ENSNBRG00000018413	ENSNBRG00000018398	ENSNBRG00000018388	ENSNBRG00000018376	rassf2a (ENSNBRG00000018359)
Nile tilapia	MODERN SPECIES	3	PRADC1 (ENSONIG00000014334)	hic1l (ENSONIG00000039232)	serpind1 (ENSONIG00000014348)	pi4kab (ENSONIG00000014336)	snap29 (ENSONIG00000028811)	ENSONIG00000033773	SLC25A1 (ENSONIG00000014353)	CLTCL1 (ENSONIG00000014354)	ENSONIG00000037980	PLAT (ENSONIG00000014359)	ikbkb (ENSONIG00000014360)	vdac3 (ENSONIG00000014368)	enkd1 (ENSONIG00000014372)	polb (ENSONIG00000014374)	ENSONIG00000014382 #23	dynll1 (ENSONIG00000039978) #22	rpl6 (ENSONIG00000014384)	acaa2 (ENSONIG00000014388)	mrpl40 (ENSONIG00000014393)	si:ch211-51h9.6 (ENSONIG00000040817)	ufd1l (ENSONIG00000014395)	dhx37 (ENSONIG00000014404)	ENSONIG00000029096	septin5a (ENSONIG00000040547)	zgc:63587 (ENSONIG00000014408)	cldn5a (ENSONIG00000020432)	cdc45 (ENSONIG00000014412)	plpp5 (ENSONIG00000042110)	NSD3 (ENSONIG00000014418)	LETM2 (ENSONIG00000014421)	prnprs3 (ENSONIG00000014423)
Midas cichlid	MODERN SPECIES	532	ENSACIG00000018856	ENSACIG00000018844	hic1l (ENSACIG00000018835)	serpind1 (ENSACIG00000018802)	pi4kab (ENSACIG00000018730)	snap29 (ENSACIG00000018710)	ENSACIG00000018700	SLC25A1 (ENSACIG00000018660)	CLTCL1 (ENSACIG00000018605)	PLAT (ENSACIG00000018518)	ikbkb (ENSACIG00000018468)	vdac3 (ENSACIG00000018446)	enkd1 (ENSACIG00000018422)	polb (ENSACIG00000018401)	ENSACIG00000018391	dynll1 (ENSACIG00000018385) #22	rpl6 (ENSACIG00000018214)	ENSACIG00000018182
Pomacentridae	ANCESTRAL SPECIES		ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00940000158546
Pomacentridae_A	ANCESTRAL SPECIES	1	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00940000158546
Amphiprion	ANCESTRAL SPECIES	20	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000009837	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00940000177458	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00940000158546
Clown anemonefish	MODERN SPECIES	1633					serpind1 (ENSAOCG00000000072)	pi4kab (ENSAOCG00000003085)	snap29 (ENSAOCG00000000074)	ENSAOCG00000003099	SLC25A1 (ENSAOCG00000003112)	CLTCL1 (ENSAOCG00000003149)	PLAT (ENSAOCG00000003161)	ikbkb (ENSAOCG00000003169)	vdac3 (ENSAOCG00000003177)	enkd1 (ENSAOCG00000003184)	polb (ENSAOCG00000003197)	dynll1 (ENSAOCG00000003208) #22	rpl6 (ENSAOCG00000003204)	acaa2 (ENSAOCG00000003214)	mrpl40 (ENSAOCG00000003216)	si:ch211-51h9.6 (ENSAOCG00000003219)	ufd1l (ENSAOCG00000003231)	ENSAOCG00000003258	ENSAOCG00000003265	ENSAOCG00000003271	RFX7 (ENSAOCG00000003279)	ENSAOCG00000000083	rsl24d1 (ENSAOCG00000003309)	ARPP19 (ENSAOCG00000003315)	ENSAOCG00000003321	ENSAOCG00000003335	MYO5C (ENSAOCG00000003351)
Orange clownfish	MODERN SPECIES	19	PRADC1 (ENSAPEG00000016611)	hic1l (ENSAPEG00000016621)	pi4kab (ENSAPEG00000016643)	serpind1 (ENSAPEG00000016774)	ENSAPEG00000016807	snap29 (ENSAPEG00000016832)	ENSAPEG00000016859	SLC25A1 (ENSAPEG00000016890)	CLTCL1 (ENSAPEG00000016960)	ENSAPEG00000017061	PLAT (ENSAPEG00000017076)	ikbkb (ENSAPEG00000017117)	vdac3 (ENSAPEG00000017163)	enkd1 (ENSAPEG00000017204)	polb (ENSAPEG00000017246)	dynll1 (ENSAPEG00000017303) #22	rpl6 (ENSAPEG00000017318)	acaa2 (ENSAPEG00000017346)	mrpl40 (ENSAPEG00000017401)	si:ch211-51h9.6 (ENSAPEG00000017393)	ufd1l (ENSAPEG00000017418)	dhx37 (ENSAPEG00000017509)	ENSAPEG00000017598	septin5a (ENSAPEG00000017611)	zgc:63587 (ENSAPEG00000017625)	cldn5a (ENSAPEG00000017660)	cdc45 (ENSAPEG00000017699)	plpp5 (ENSAPEG00000017740)	NSD3 (ENSAPEG00000017752)	LETM2 (ENSAPEG00000017832)	rassf2a (ENSAPEG00000017854)
Spiny chromis	MODERN SPECIES	802	hic1l (ENSAPOG00000005694)	pi4kab (ENSAPOG00000005676)	serpind1 (ENSAPOG00000005481)	ENSAPOG00000005451	snap29 (ENSAPOG00000005409)	ENSAPOG00000005393	SLC25A1 (ENSAPOG00000005359)	CLTCL1 (ENSAPOG00000005313)	ENSAPOG00000005135	PLAT (ENSAPOG00000005123)	ikbkb (ENSAPOG00000005113)	vdac3 (ENSAPOG00000005096)	enkd1 (ENSAPOG00000005040)	polb (ENSAPOG00000005004)	rpl6 (ENSAPOG00000004958)	dynll1 (ENSAPOG00000004940) #22
Bicolor damselfish	MODERN SPECIES	616	ENSSPAG00000008087	PRADC1 (ENSSPAG00000008080)	hic1l (ENSSPAG00000008074)	serpind1 (ENSSPAG00000008061)	pi4kab (ENSSPAG00000007946)	snap29 (ENSSPAG00000007913)	ENSSPAG00000007890	SLC25A1 (ENSSPAG00000007816)	CLTCL1 (ENSSPAG00000007607)	ENSSPAG00000007570	PLAT (ENSSPAG00000007540)	ikbkb (ENSSPAG00000007489)	vdac3 (ENSSPAG00000007450)	enkd1 (ENSSPAG00000007428)	polb (ENSSPAG00000007375)	dynll1 (ENSSPAG00000007361) #22	ENSSPAG00000007348
Atherinomorphae	ANCESTRAL SPECIES	1	ENSGT00390000010435.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Oryzias	ANCESTRAL SPECIES	7	ENSGT00390000004228	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a.g	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Oryzias_a	ANCESTRAL SPECIES	3	ENSGT00390000004228	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000001618 #23	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00940000177458	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a.g	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355
Chinese medaka	MODERN SPECIES	37	ENSOSIG00000022955	ENSOSIG00000022949	hic1l (ENSOSIG00000022947)	serpind1 (ENSOSIG00000022942)	pi4kab (ENSOSIG00000018406)	snap29 (ENSOSIG00000017919)	ENSOSIG00000017916	SLC25A1 (ENSOSIG00000017188)	CLTCL1 (ENSOSIG00000016756)	ENSOSIG00000016705	PLAT (ENSOSIG00000016693)	ikbkb (ENSOSIG00000015909)	vdac3 (ENSOSIG00000015638)	enkd1 (ENSOSIG00000015633)	polb (ENSOSIG00000015635)	dynll1 (ENSOSIG00000015630) #22	ENSOSIG00000015629 #23	rpl6 (ENSOSIG00000015628)	acaa2 (ENSOSIG00000015627)	mrpl40 (ENSOSIG00000015626)	si:ch211-51h9.6 (ENSOSIG00000015624)	ufd1l (ENSOSIG00000015621)	dhx37 (ENSOSIG00000015376)	ENSOSIG00000015373	septin5a (ENSOSIG00000015366)	zgc:63587 (ENSOSIG00000013469)	cdc45 (ENSOSIG00000013447)	plpp5 (ENSOSIG00000013444)	NSD3 (ENSOSIG00000013030)	LETM2 (ENSOSIG00000013019)	ENSOSIG00000013017
Japanese Medaka HdrR	MODERN SPECIES	23	hic1l (ENSORLG00000002131)	ENSORLG00000025725	ENSORLG00000002217	serpind1 (ENSORLG00000002247)	snap29 (ENSORLG00000002265)	ENSORLG00000002270	ENSORLG00000002292	CLTCL1 (ENSORLG00000002325)	ENSORLG00000024247	plat (ENSORLG00000002355)	ikbkb (ENSORLG00000002465)	vdac3 (ENSORLG00000002493)	enkd1 (ENSORLG00000002502)	polb (ENSORLG00000002509)	ENSORLG00000022487 #23	dynll1 (ENSORLG00000002511) #22	rpl6 (ENSORLG00000002519)	acaa2 (ENSORLG00000002564)	mrpl40 (ENSORLG00000002574)	si:ch211-51h9.6 (ENSORLG00000002580)	ufd1l (ENSORLG00000002611)	dhx37 (ENSORLG00000002635)	ENSORLG00000028422	ENSORLG00000023529	gp1bb (ENSORLG00000024381)	septin5a (ENSORLG00000024104)	zgc:63587 (ENSORLG00000002669)	cldn5a (ENSORLG00000027288)	cdc45 (ENSORLG00000002724)	plpp5 (ENSORLG00000002747)	NSD3 (ENSORLG00000002807)
Oryzias_b	ANCESTRAL SPECIES	6	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a.g	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Indian medaka	MODERN SPECIES	11	ENSOMEG00000016664	ENSOMEG00000016684	ENSOMEG00000016693	ENSOMEG00000016702	serpind1 (ENSOMEG00000016719)	ENSOMEG00000000422	snap29 (ENSOMEG00000016798)	ENSOMEG00000016836	SLC25A1 (ENSOMEG00000016887)	CLTCL1 (ENSOMEG00000017096)	ENSOMEG00000000698	PLAT (ENSOMEG00000017298)	ikbkb (ENSOMEG00000017438)	vdac3 (ENSOMEG00000017489)	enkd1 (ENSOMEG00000000438)	dynll1 (ENSOMEG00000017515) #22	polb (ENSOMEG00000017566)	rpl6 (ENSOMEG00000017595)	acaa2 (ENSOMEG00000017608)	mrpl40 (ENSOMEG00000017632)	si:ch211-51h9.6 (ENSOMEG00000017654)	ufd1l (ENSOMEG00000017707)	dhx37 (ENSOMEG00000000674)	gp1bb (ENSOMEG00000017791)	septin5a (ENSOMEG00000017874)	zgc:63587 (ENSOMEG00000017925)	cdc45 (ENSOMEG00000017970)	plpp5 (ENSOMEG00000018008)	NSD3 (ENSOMEG00000018046)	LETM2 (ENSOMEG00000018137)	ENSOMEG00000018169
Javanese ricefish	MODERN SPECIES	23	utp15 (ENSOJAG00000002316)	ENSOJAG00000002288	ENSOJAG00000002266	hic1l (ENSOJAG00000002257)	serpind1 (ENSOJAG00000002015)	snap29 (ENSOJAG00000001837)	ENSOJAG00000001829	SLC25A1 (ENSOJAG00000001786)	ENSOJAG00000001714	PLAT (ENSOJAG00000001594)	ikbkb (ENSOJAG00000001342)	vdac3 (ENSOJAG00000001251)	polb (ENSOJAG00000001229)	enkd1 (ENSOJAG00000001218)	ENSOJAG00000001214	dynll1 (ENSOJAG00000001211) #22	rpl6 (ENSOJAG00000001198)	acaa2 (ENSOJAG00000001160)	mrpl40 (ENSOJAG00000001133)	si:ch211-51h9.6 (ENSOJAG00000001128)	ufd1l (ENSOJAG00000001117)	ENSOJAG00000000539	mccc2 (ENSOJAG00000000183)	TMEM8B (ENSOJAG00000017142)	tars1 (ENSOJAG00000014924)	gas1a (ENSOJAG00000014742)	ENSOJAG00000014720	ENSOJAG00000014697	cenatac (ENSOJAG00000014678)	mfsd10 (ENSOJAG00000014570)	ENSOJAG00000014516
Cyprinodontiformes	ANCESTRAL SPECIES	1	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000156835.l.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Cyprinodontoidei	ANCESTRAL SPECIES	1	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00950000183166.a.a.a.b.f	ENSGT00940000157820.a.b	ENSGT00940000155571.A	ENSGT00940000156835.l.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
NAME_4	ANCESTRAL SPECIES	24	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT01030000235069	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000155715	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Mummichog	MODERN SPECIES	1328													enkd1 (ENSFHEG00000008895)	polb (ENSFHEG00000008945)	ENSFHEG00000008955	dynll1 (ENSFHEG00000008975) #22	rpl6 (ENSFHEG00000008998)	acaa2 (ENSFHEG00000009035)
Sheepshead minnow	MODERN SPECIES	372	ENSCVAG00000019427	ENSCVAG00000019414	hic1l (ENSCVAG00000019191)	pi4kab (ENSCVAG00000019178)	serpind1 (ENSCVAG00000019071)	ENSCVAG00000000498	snap29 (ENSCVAG00000018974)	ENSCVAG00000018960	SLC25A1 (ENSCVAG00000018934)	CLTCL1 (ENSCVAG00000018908)	PLAT (ENSCVAG00000018691)	ikbkb (ENSCVAG00000018660)	vdac3 (ENSCVAG00000018428)	enkd1 (ENSCVAG00000018372)	polb (ENSCVAG00000018361)	dynll1 (ENSCVAG00000018284) #22	rpl6 (ENSCVAG00000018272)	acaa2 (ENSCVAG00000018266)	mrpl40 (ENSCVAG00000018229)	si:ch211-51h9.6 (ENSCVAG00000018222)	ufd1l (ENSCVAG00000018212)	dhx37 (ENSCVAG00000018153)	gp1bb (ENSCVAG00000018001)	septin5a (ENSCVAG00000017986)	zgc:63587 (ENSCVAG00000017959)	cldn5a (ENSCVAG00000017918)	cdc45 (ENSCVAG00000017889)	plpp5 (ENSCVAG00000017843)	NSD3 (ENSCVAG00000017829)	LETM2 (ENSCVAG00000017620)	prnprs3 (ENSCVAG00000017612)
Poeciliinae	ANCESTRAL SPECIES	5	ENSGT00390000010435.B	ENSGT00940000159978	ENSGT00550000074798.a.b	ENSGT00940000158664	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000156835.l.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Poecilia	ANCESTRAL SPECIES	3	ENSGT00390000010435.A	ENSGT00390000010435.B	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT01100000263793	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
NAME_6	ANCESTRAL SPECIES	27	ENSGT00390000010435.B	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000160595.a.a	ENSGT00940000155715	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000000378.d.b #22	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a	ENSGT00530000064873.b.g.b
Sailfin molly	MODERN SPECIES	837												ikbkb (ENSPLAG00000016843)	vdac3 (ENSPLAG00000017207)	enkd1 (ENSPLAG00000017224)	polb (ENSPLAG00000017258)	dynll1 (ENSPLAG00000017271) #22	rpl6 (ENSPLAG00000017306)	acaa2 (ENSPLAG00000000396)	mrpl40 (ENSPLAG00000017335)	si:ch211-51h9.6 (ENSPLAG00000017340)	ufd1l (ENSPLAG00000017380)	dhx37 (ENSPLAG00000017487)	ENSPLAG00000017511	septin5a (ENSPLAG00000018547)	zgc:63587 (ENSPLAG00000018604)	cldn5a (ENSPLAG00000018631)	cdc45 (ENSPLAG00000018713)	plpp5 (ENSPLAG00000018742)	NSD3 (ENSPLAG00000018796)
Amazon molly	MODERN SPECIES	398	ENSPFOG00000020466	hic1l (ENSPFOG00000020465)	serpind1 (ENSPFOG00000014362)	pi4kab (ENSPFOG00000013937)	snap29 (ENSPFOG00000013846)	ENSPFOG00000013826	SLC25A1 (ENSPFOG00000013766)	ENSPFOG00000022633	ENSPFOG00000013448	ENSPFOG00000013145	PLAT (ENSPFOG00000013063)	ikbkb (ENSPFOG00000012837)	vdac3 (ENSPFOG00000012773)	enkd1 (ENSPFOG00000012747)	polb (ENSPFOG00000012676)	dynll1 (ENSPFOG00000012673) #22	rpl6 (ENSPFOG00000012600)	acaa2 (ENSPFOG00000012540)	mrpl40 (ENSPFOG00000012506)	ufd1l (ENSPFOG00000012499)	dhx37 (ENSPFOG00000012138)	gp1bb (ENSPFOG00000020464)	septin5a (ENSPFOG00000011811)	zgc:63587 (ENSPFOG00000011730)	cldn5a (ENSPFOG00000020463)	cdc45 (ENSPFOG00000011591)	plpp5 (ENSPFOG00000011539)	ENSPFOG00000011218	LETM2 (ENSPFOG00000011174)	prnprs3 (ENSPFOG00000011164)	rassf2a (ENSPFOG00000022252)
Guppy	MODERN SPECIES	461	btf3 (ENSPREG00000010425)	ENSPREG00000010433	hic1l (ENSPREG00000010443)	pi4kab (ENSPREG00000010519)	serpind1 (ENSPREG00000010743)	snap29 (ENSPREG00000010781)	ENSPREG00000010799	SLC25A1 (ENSPREG00000010834)	CLTCL1 (ENSPREG00000010914)	PLAT (ENSPREG00000011099)	ikbkb (ENSPREG00000011213)	vdac3 (ENSPREG00000011245)	enkd1 (ENSPREG00000011330)	polb (ENSPREG00000011349)	ENSPREG00000011377	dynll1 (ENSPREG00000011383) #22	rpl6 (ENSPREG00000011393)	ENSPREG00000011410	acaa2 (ENSPREG00000011420)	mrpl40 (ENSPREG00000011448)	si:ch211-51h9.6 (ENSPREG00000011460)	ufd1l (ENSPREG00000011473)	dhx37 (ENSPREG00000011504)	gp1bb (ENSPREG00000011573)	septin5a (ENSPREG00000011585)	zgc:63587 (ENSPREG00000011612)	cldn5a (ENSPREG00000011649)	cdc45 (ENSPREG00000011687)	plpp5 (ENSPREG00000011750)	NSD3 (ENSPREG00000011814)	ENSPREG00000011933
Platyfish	MODERN SPECIES	3	hic1l (ENSXMAG00000020311)	pi4kab (ENSXMAG00000014261)	serpind1 (ENSXMAG00000014376)	snap29 (ENSXMAG00000014386)	ENSXMAG00000026447	SLC25A1 (ENSXMAG00000023920)	ENSXMAG00000014407	ENSXMAG00000024435	PLAT (ENSXMAG00000014441)	ikbkb (ENSXMAG00000014460)	vdac3 (ENSXMAG00000029526)	enkd1 (ENSXMAG00000014531)	polb (ENSXMAG00000014540)	ENSXMAG00000024420 #23	rpl6 (ENSXMAG00000026838)	dynll1 (ENSXMAG00000024358) #22	acaa2 (ENSXMAG00000014579)	mrpl40 (ENSXMAG00000014595)	si:ch211-51h9.6 (ENSXMAG00000014600)	ufd1l (ENSXMAG00000014601)	dhx37 (ENSXMAG00000014623)	gp1bb (ENSXMAG00000020312)	septin5a (ENSXMAG00000014644)	zgc:63587 (ENSXMAG00000014718)	cldn5a (ENSXMAG00000023193)	cdc45 (ENSXMAG00000014750)	plpp5 (ENSXMAG00000014791)	NSD3 (ENSXMAG00000028356)	LETM2 (ENSXMAG00000023674)	prnprs3 (ENSXMAG00000025665)	ENSXMAG00000020314
Aplocheiloidei	ANCESTRAL SPECIES	21	ENSGT00940000153288.b	ENSGT00390000012630.B	ENSGT00940000159978	ENSGT00940000158664	ENSGT00550000074798.a.b	ENSGT00950000182843.a.b	ENSGT00390000008325.a	ENSGT00550000074856.c.b	ENSGT00950000183166.a.b	ENSGT00940000158930	ENSGT00950000182937.A.b	ENSGT00950000182869.e.b.g.a.h	ENSGT00940000153866.B	ENSGT00940000156918	ENSGT00390000001618 #23	ENSGT00390000000378.d.b #22	ENSGT01100000263793	ENSGT00390000003682	ENSGT01030000234626.D	ENSGT00390000010239	ENSGT00390000002511	ENSGT00390000002408	ENSGT00550000074985	ENSGT00530000064244.b	ENSGT00940000159913.a.a	ENSGT00940000164668	ENSGT00940000161769.b.a	ENSGT00390000009662	ENSGT00940000159772	ENSGT00940000155355	ENSGT00950000183167.a.b.b.a
Mangrove rivulus	MODERN SPECIES	21	utp15 (ENSKMAG00000004713)	ENSKMAG00000004693	ENSKMAG00000004661	hic1l (ENSKMAG00000004641)	serpind1 (ENSKMAG00000004579)	pi4kab (ENSKMAG00000004404)	snap29 (ENSKMAG00000004340)	ENSKMAG00000004312	SLC25A1 (ENSKMAG00000004257)	CLTCL1 (ENSKMAG00000004093)	PLAT (ENSKMAG00000004012)	ikbkb (ENSKMAG00000003977)	vdac3 (ENSKMAG00000003937)	enkd1 (ENSKMAG00000003893)	polb (ENSKMAG00000003834)	dynll1 (ENSKMAG00000003804) #22	ENSKMAG00000003790	rpl6 (ENSKMAG00000003779)	acaa2 (ENSKMAG00000003733)	si:ch211-51h9.6 (ENSKMAG00000003713)	mrpl40 (ENSKMAG00000003717)	ufd1l (ENSKMAG00000003658)	dhx37 (ENSKMAG00000003517)	gp1bb (ENSKMAG00000003485)	septin5a (ENSKMAG00000003408)	zgc:63587 (ENSKMAG00000003351)	cldn5a (ENSKMAG00000003322)	cdc45 (ENSKMAG00000003240)	plpp5 (ENSKMAG00000003214)	NSD3 (ENSKMAG00000003104)	LETM2 (ENSKMAG00000003081)
Turquoise killifish	MODERN SPECIES	1627	UTP15 (ENSNFUG00015017071)	BTF3 (ENSNFUG00015017060)	ENSNFUG00015017007	serpind1 (ENSNFUG00015016997)	pi4kab (ENSNFUG00015016838)	snap29 (ENSNFUG00015016817)	ENSNFUG00015016808	SLC25A1 (ENSNFUG00015016764)	ENSNFUG00015016594	PLAT (ENSNFUG00015016559)	ikbkb (ENSNFUG00015015755)	VDAC3 (ENSNFUG00015015582)	ENSNFUG00015015559	POLB (ENSNFUG00015015473)	ENSNFUG00015015455 #23	DYNLL1 (ENSNFUG00015015440) #22	RPL6 (ENSNFUG00015015428)	ACAA2 (ENSNFUG00015015302)	MRPL40 (ENSNFUG00015015276)	si:ch211-51h9.6 (ENSNFUG00015015257)	UFD1L (ENSNFUG00015015193)	ENSNFUG00015014995	SEPT5A (ENSNFUG00015014443)	zgc:63587 (ENSNFUG00015014125)	cldn5a (ENSNFUG00015016893)	CDC45 (ENSNFUG00015016758)	PPAPDC1B (ENSNFUG00015016741)	WHSC1L1 (ENSNFUG00015015319)	LETM2 (ENSNFUG00015015175)	prnprs3 (ENSNFUG00015015166)	ENSNFUG00015015157
Reedfish	DUPLICATION
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	16	ENSECRG00000008384	ENSECRG00000007436	ENSECRG00000007264	ENSECRG00000007214	ENSECRG00000007181	ENSECRG00000007175	ENSECRG00000007170	nxn (ENSECRG00000007158)	mrm3b (ENSECRG00000007153)	glod4 (ENSECRG00000007140)	BLTP2 (ENSECRG00000007118)	ENSECRG00000007075	aldoca (ENSECRG00000007055)	pigs (ENSECRG00000007000)	srsf1a (ENSECRG00000006972)	dynll1 (ENSECRG00000006963) #22	ENSECRG00000006953 #23	heatr6 (ENSECRG00000006936)	hnf1ba (ENSECRG00000006911) ##33	ddx52 (ENSECRG00000006893)	SYNRG (ENSECRG00000006830)	dusp14 (ENSECRG00000006794)	tada2a (ENSECRG00000006769)	traf4a (ENSECRG00000006750)	nek8 (ENSECRG00000006728)	tlcd1 (ENSECRG00000006711)	rpl23a (ENSECRG00000006703)	rab34a (ENSECRG00000006692)	zgc:174895 (ENSECRG00000006680)	ENSECRG00000006671	supt6h (ENSECRG00000006652)
Reedfish	MODERN SPECIES	12	ENSECRG00000005149	ENSECRG00000005141	ENSECRG00000005132	ENSECRG00000005126	ENSECRG00000005121	ENSECRG00000005117	ENSECRG00000005103	ENSECRG00000005096	ENSECRG00000005093	ENSECRG00000005086	ENSECRG00000005079	ENSECRG00000005070	ENSECRG00000005063	ENSECRG00000005050	arrb1 (ENSECRG00000005035)	ENSECRG00000005027 #22	ENSECRG00000005017 #23	PDE2A (ENSECRG00000004997)	ARAP1 (ENSECRG00000004972)	stard10 (ENSECRG00000004961)	CLPB (ENSECRG00000004952)	phox2a (ENSECRG00000004940)	inppl1a (ENSECRG00000004919)	folr (ENSECRG00000004902)	anapc15 (ENSECRG00000004898)	tomt (ENSECRG00000004891)	ENSECRG00000004886	lamtor1 (ENSECRG00000004878)	LRRC51 (ENSECRG00000004873)	ENSECRG00000004867	ENSECRG00000004854
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	9	tchp (ENSECRG00000018338)	gltpa (ENSECRG00000018386)	git2a (ENSECRG00000018456)	ankrd13a (ENSECRG00000018611)	slc6a4b (ENSECRG00000018685)	SGSM1 (ENSECRG00000018860)	triap1 (ENSECRG00000018949)	gatc (ENSECRG00000018969) #20	srsf9 (ENSECRG00000018987) #21	ENSECRG00000019005	pxmp2 (ENSECRG00000019033)	pole (ENSECRG00000019096)	ENSECRG00000019332	p2rx2 (ENSECRG00000019366) ##37	ENSECRG00000019451 #22	ENSECRG00000019485 #22	ENSECRG00000019505	msi1b (ENSECRG00000019595) #17	ENSECRG00000019765 #16	pla2g1b (ENSECRG00000019783) #16	cryba4 (ENSECRG00000019812)	crybb1 (ENSECRG00000019846)	tpst2 (ENSECRG00000019873)	ENSECRG00000019908	SRRD (ENSECRG00000019991)	tfip11 (ENSECRG00000020021)	HPS4 (ENSECRG00000020059)	asphd2 (ENSECRG00000020091)	SEZ6L (ENSECRG00000020117)	MYO18B (ENSECRG00000020182)	grk3 (ENSECRG00000020306)
Reedfish	MODERN SPECIES	9	trpv4 (ENSECRG00000018296)	tchp (ENSECRG00000018338)	gltpa (ENSECRG00000018386)	git2a (ENSECRG00000018456)	ankrd13a (ENSECRG00000018611)	slc6a4b (ENSECRG00000018685)	SGSM1 (ENSECRG00000018860)	triap1 (ENSECRG00000018949)	gatc (ENSECRG00000018969) #20	srsf9 (ENSECRG00000018987) #21	ENSECRG00000019005	pxmp2 (ENSECRG00000019033)	pole (ENSECRG00000019096)	ENSECRG00000019332	p2rx2 (ENSECRG00000019366) ##37	ENSECRG00000019451 #22	ENSECRG00000019485 #22	ENSECRG00000019505	msi1b (ENSECRG00000019595) #17	ENSECRG00000019765 #16	pla2g1b (ENSECRG00000019783) #16	cryba4 (ENSECRG00000019812)	crybb1 (ENSECRG00000019846)	tpst2 (ENSECRG00000019873)	ENSECRG00000019908	SRRD (ENSECRG00000019991)	tfip11 (ENSECRG00000020021)	HPS4 (ENSECRG00000020059)	asphd2 (ENSECRG00000020091)	SEZ6L (ENSECRG00000020117)	MYO18B (ENSECRG00000020182)
Elephant shark	MODERN SPECIES	1551	bves (ENSCMIG00000008548)	popdc3 (ENSCMIG00000008546)	prep (ENSCMIG00000008444)	prdm1a (ENSCMIG00000008406)	atg5 (ENSCMIG00000008396)	ENSCMIG00000008385	rtn4ip1 (ENSCMIG00000008378)	qrsl1 (ENSCMIG00000008358)	mtres1 (ENSCMIG00000008352)	bend3 (ENSCMIG00000008351)	ENSCMIG00000008348 #18	ENSCMIG00000008346	GATC (ENSCMIG00000008344) #20	ENSCMIG00000008338	ENSCMIG00000008335	ENSCMIG00000008333 #22	coq5 (ENSCMIG00000008328) #24	pdss2 (ENSCMIG00000008316)	rnf10 (ENSCMIG00000008310) #25	ENSCMIG00000008306 #26	cabp1a (ENSCMIG00000008302) #27	mlec (ENSCMIG00000008297) #28	ENSCMIG00000008292 #29	acads (ENSCMIG00000008290) #30	sppl3 (ENSCMIG00000008246) #31	ENSCMIG00000008228 ##33	slc35e4 (ENSCMIG00000008227)	ENSCMIG00000008224 #34	ENSCMIG00000008221	ENSCMIG00000008217	SUSD2 (ENSCMIG00000008212)