Muroidea	ANCESTRAL SPECIES	13	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00390000002253	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37	ENSGT00940000154400.b.d	ENSGT00390000002197	ENSGT00940000155075.a.b
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00910000145143	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00390000002253	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37	ENSGT00940000154400.b.d.b	ENSGT00390000002197	ENSGT00940000155075.a.b
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00910000145143	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00940000170289 #33	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37	ENSGT00940000154400.b.d.a.a	ENSGT00390000002197
Mus	ANCESTRAL SPECIES	9	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.c #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b #28	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00940000170289 #33	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37
Shrew mouse	MODERN SPECIES	23	Ndufb11 (MGP_PahariEiJ_G0031505) #7	Rbm10 (MGP_PahariEiJ_G0031506) #8	Uba1 (MGP_PahariEiJ_G0031507) #9	Cdk16 (MGP_PahariEiJ_G0031508) #10	Usp11 (MGP_PahariEiJ_G0031509) #11	Araf (MGP_PahariEiJ_G0031510) #12	Syn1 (MGP_PahariEiJ_G0031511) #13	Timp1 (MGP_PahariEiJ_G0031512) #14	Cfp (MGP_PahariEiJ_G0031513) #15	Elk1 (MGP_PahariEiJ_G0031514) #16	Uxt (MGP_PahariEiJ_G0031515) #17	Zfp182 (MGP_PahariEiJ_G0031516) #18	Spaca5 (MGP_PahariEiJ_G0031517) #19	Zfp300 (MGP_PahariEiJ_G0031518) #20	Ssxa1 (MGP_PahariEiJ_G0031519) #21	Agtr2 (MGP_PahariEiJ_G0031520) #22	Slc6a14 (MGP_PahariEiJ_G0031521) #23	MGP_PahariEiJ_G0031522 #24	Klhl13 (MGP_PahariEiJ_G0031523) #25	Wdr44 (MGP_PahariEiJ_G0031524) #26	Tesl1 (MGP_PahariEiJ_G0031525) #27	MGP_PahariEiJ_G0031526 #28	MGP_PahariEiJ_G0031527 #29	Il13ra1 (MGP_PahariEiJ_G0031528) #30	Zcchc12 (MGP_PahariEiJ_G0031529) #31	Lonrf3 (MGP_PahariEiJ_G0031530) #32	MGP_PahariEiJ_G0031531 #33	Gm14569 (MGP_PahariEiJ_G0031532) #34	Pgrmc1 (MGP_PahariEiJ_G0031533) #35	MGP_PahariEiJ_G0031534 #36	Slc25a43 (MGP_PahariEiJ_G0031535) #37
Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.c #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b #28	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00940000170289 #33	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.c #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b #28	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00940000170289 #33	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37
Mouse	MODERN SPECIES	37	Ndufb11 (ENSMUSG00000031059) #7	Rbm10 (ENSMUSG00000031060) #8	Uba1 (ENSMUSG00000001924) #9	Cdk16 (ENSMUSG00000031065) #10	Usp11 (ENSMUSG00000031066) #11	Araf (ENSMUSG00000001127) #12	Syn1 (ENSMUSG00000037217) #13	Timp1 (ENSMUSG00000001131) #14	Cfp (ENSMUSG00000001128) #15	Elk1 (ENSMUSG00000009406) #16	Uxt (ENSMUSG00000001134) #17	Zfp182 (ENSMUSG00000054737) #18	Spaca5 (ENSMUSG00000037167) #19	Zfp300 (ENSMUSG00000031079) #20	Ssxa1 (ENSMUSG00000062814) #21	Agtr2 (ENSMUSG00000068122) #22	Slc6a14 (ENSMUSG00000031089) #23	Gm28269 (ENSMUSG00000101818) #24	Klhl13 (ENSMUSG00000036782) #25	Wdr44 (ENSMUSG00000036769) #26	Tesl1 (ENSMUSG00000068113) #27	Gm5934 (ENSMUSG00000084063)	Gm4297 (ENSMUSG00000081218)	Gm5935 (ENSMUSG00000093923)	Gm5169 (ENSMUSG00000096620)	Gm1993 (ENSMUSG00000073267)	Gm5168 (ENSMUSG00000079655)	Gm2012 (ENSMUSG00000082639)	Gm2030 (ENSMUSG00000083628)	Slx (ENSMUSG00000095063)	Gm14525 (ENSMUSG00000071788)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.d.f ##21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b #28	ENSGT00940000155993.d.a.a.a ##28	ENSGT00940000155658 #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00940000170289 #33	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37
spretus	MODERN SPECIES	19	Rbm10 (MGP_SPRETEiJ_G0034113) #8	Uba1 (MGP_SPRETEiJ_G0034114) #9	Cdk16 (MGP_SPRETEiJ_G0034115) #10	Usp11 (MGP_SPRETEiJ_G0034116) #11	Araf (MGP_SPRETEiJ_G0034117) #12	Syn1 (MGP_SPRETEiJ_G0034118) #13	Timp1 (MGP_SPRETEiJ_G0034119) #14	Cfp (MGP_SPRETEiJ_G0034120) #15	Elk1 (MGP_SPRETEiJ_G0034121) #16	Uxt (MGP_SPRETEiJ_G0034122) #17	Zfp182 (MGP_SPRETEiJ_G0034123) #18	Spaca5 (MGP_SPRETEiJ_G0034124) #19	Zfp300 (MGP_SPRETEiJ_G0034125) #20	MGP_SPRETEiJ_G0034126 ##21	MGP_SPRETEiJ_G0034127	Agtr2 (MGP_SPRETEiJ_G0034128) #22	Slc6a14 (MGP_SPRETEiJ_G0034129) #23	Gm28269 (MGP_SPRETEiJ_G0034130) #24	Klhl13 (MGP_SPRETEiJ_G0034131) #25	MGP_SPRETEiJ_G0034132	MGP_SPRETEiJ_G0034133 #26	Tesl1 (MGP_SPRETEiJ_G0034134) #27	MGP_SPRETEiJ_G0034135 #28	Dock11 (MGP_SPRETEiJ_G0034136) #29	Il13ra1 (MGP_SPRETEiJ_G0034137) #30	Zcchc12 (MGP_SPRETEiJ_G0034138) #31	Lonrf3 (MGP_SPRETEiJ_G0034139) #32	MGP_SPRETEiJ_G0034140 #33	Gm14569 (MGP_SPRETEiJ_G0034141) #34	Pgrmc1 (MGP_SPRETEiJ_G0034142) #35	Akap17b (MGP_SPRETEiJ_G0034143) #36
Steppe mouse	MODERN SPECIES	1994																Agtr2 (ENSMSIG00000002524) #22
Ryukyu mouse	MODERN SPECIES	19	Rbm10 (MGP_CAROLIEiJ_G0032963) #8	Uba1 (MGP_CAROLIEiJ_G0032964) #9	Cdk16 (MGP_CAROLIEiJ_G0032965) #10	Usp11 (MGP_CAROLIEiJ_G0032966) #11	Araf (MGP_CAROLIEiJ_G0032967) #12	Syn1 (MGP_CAROLIEiJ_G0032968) #13	Timp1 (MGP_CAROLIEiJ_G0032969) #14	Cfp (MGP_CAROLIEiJ_G0032970) #15	Elk1 (MGP_CAROLIEiJ_G0032971) #16	Uxt (MGP_CAROLIEiJ_G0032972) #17	Zfp182 (MGP_CAROLIEiJ_G0032973) #18	Spaca5 (MGP_CAROLIEiJ_G0032974) #19	Zfp300 (MGP_CAROLIEiJ_G0032975) #20	Ssxa1 (MGP_CAROLIEiJ_G0032976) #21	MGP_CAROLIEiJ_G0032977 ##21	Agtr2 (MGP_CAROLIEiJ_G0032978) #22	Slc6a14 (MGP_CAROLIEiJ_G0032979) #23	Gm28269 (MGP_CAROLIEiJ_G0032980) #24	Klhl13 (MGP_CAROLIEiJ_G0032981) #25	Wdr44 (MGP_CAROLIEiJ_G0032982) #26	Dock11 (MGP_CAROLIEiJ_G0032983) #29	Il13ra1 (MGP_CAROLIEiJ_G0032984) #30	Zcchc12 (MGP_CAROLIEiJ_G0032985) #31	Lonrf3 (MGP_CAROLIEiJ_G0032986) #32	MGP_CAROLIEiJ_G0032987 #33	Gm14569 (MGP_CAROLIEiJ_G0032988) #34	Pgrmc1 (MGP_CAROLIEiJ_G0032989) #35	Akap17b (MGP_CAROLIEiJ_G0032990) #36	Slc25a43 (MGP_CAROLIEiJ_G0032991) #37	Slc25a5 (MGP_CAROLIEiJ_G0032992)	Steep1 (MGP_CAROLIEiJ_G0032993)
Rat	MODERN SPECIES	46	Trpc5 (ENSRNOG00000027233)	Trpc5os (ENSRNOG00000064383)	Rtl4 (ENSRNOG00000031638)	Lhfpl1 (ENSRNOG00000027601)	Amot (ENSRNOG00000007345)	ENSRNOG00000065631	ENSRNOG00000065464	Htr2c (ENSRNOG00000030877)	Il13ra2 (ENSRNOG00000032973)	Lrch2 (ENSRNOG00000029582)	Luzp4 (ENSRNOG00000069107)	AABR07041089.1 (ENSRNOG00000018923)	Pls3 (ENSRNOG00000027520)	ENSRNOG00000067242	AABR07041109.1 (ENSRNOG00000050465)	Agtr2 (ENSRNOG00000050006) #22	Slc6a14 (ENSRNOG00000005687) #23	ENSRNOG00000068085 #24	Ppp1r2-ps2 (ENSRNOG00000064591)	AABR07041140.1 (ENSRNOG00000006459)	Sec61g-ps4 (ENSRNOG00000061620)	Klhl13 (ENSRNOG00000014029) #25	Wdr44 (ENSRNOG00000029068) #26	ENSRNOG00000063057	Tesl (ENSRNOG00000033628) ##28	RGD1566184 (ENSRNOG00000057692) #27	ENSRNOG00000067513 #28	RGD1566387 (ENSRNOG00000013698) ##28	Dock11 (ENSRNOG00000013321) #29	Il13ra1-ps1 (ENSRNOG00000013170) #30	Zcchc12 (ENSRNOG00000013162) #31
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT00390000018248	ENSGT01060000248594.e.a	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00910000145143	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155658.`b #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00390000002253	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37	ENSGT00940000154400.b.d.b	ENSGT00390000002197	ENSGT00940000155075.a.b
Cricetinae	ANCESTRAL SPECIES	29	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00390000018248	ENSGT01060000248594.e.a	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155658.`b #29	ENSGT00940000160896 #30	ENSGT01030000234522.C.b.e.a.b.c #31	ENSGT00440000033329.b.a.b #32	ENSGT00390000002253	ENSGT00940000163031.b.a #34	ENSGT00940000160619 #35	ENSGT00440000039314.b #36	ENSGT00940000160686 #37	ENSGT00940000154400.b.d.b	ENSGT00390000002197	ENSGT00940000155075.a.b
Golden Hamster	MODERN SPECIES	876															Pls3 (ENSMAUG00000000484)	Agtr2 (ENSMAUG00000000833) #22	Slc6a14 (ENSMAUG00000000247) #23
Chinese hamster chok1gshd	MODERN SPECIES	16	Trpc5os (ENSCGRG00001011623)	Trpc5 (ENSCGRG00001002419)	Rtl4 (ENSCGRG00001001788)	Lhfpl1 (ENSCGRG00001022195)	Amot (ENSCGRG00001022119)	ENSCGRG00001021667	ENSCGRG00001019270	ENSCGRG00001012570	Htr2c (ENSCGRG00001017187)	Il13ra2 (ENSCGRG00001001265)	Lrch2 (ENSCGRG00001020464)	ENSCGRG00001004444	Pls3 (ENSCGRG00001011289)	ENSCGRG00001019114	ENSCGRG00001017952	Agtr2 (ENSCGRG00001009526) #22	ENSCGRG00001015787	Slc6a14 (ENSCGRG00001016499) #23	ENSCGRG00001010136	ENSCGRG00001015227	Klhl13 (ENSCGRG00001021812) #25	Wdr44 (ENSCGRG00001022218) #26	Dock11 (ENSCGRG00001021213) #29	Il13ra1 (ENSCGRG00001020150) #30	Zcchc12 (ENSCGRG00001011149) #31	Lonrf3 (ENSCGRG00001002226) #32	ENSCGRG00001000825	Pgrmc1 (ENSCGRG00001019069) #35	Akap17b (ENSCGRG00001018171) #36	Slc25a43 (ENSCGRG00001003699) #37	ENSCGRG00001007178
Cricetidae_B	ANCESTRAL SPECIES	114																ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23
Prairie vole	MODERN SPECIES	133						Or11n2 (ENSMOCG00000013107)	Igsf1 (ENSMOCG00000017036)	ENSMOCG00000007912	Arhgap36 (ENSMOCG00000012137)	Enox2 (ENSMOCG00000019573)	Fsip2l (ENSMOCG00000012662)	ENSMOCG00000000714	Gpr119 (ENSMOCG00000002591)	Slc25a14 (ENSMOCG00000013152)	ENSMOCG00000001023	Agtr2 (ENSMOCG00000008234) #22	ENSMOCG00000002287	Slc6a14 (ENSMOCG00000011819) #23
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000025703	ENSPEMG00000025810	Pwwp3b (ENSPEMG00000031298)	Fam199x (ENSPEMG00000022328)	ENSPEMG00000022336	ENSPEMG00000030442	Tex13a (ENSPEMG00000009571)	ENSPEMG00000031375	ENSPEMG00000008826	Il1rapl2 (ENSPEMG00000002784)	ENSPEMG00000009338	Serpina7 (ENSPEMG00000016392)	ENSPEMG00000028394	ENSPEMG00000026482	ENSPEMG00000026764	Agtr2 (ENSPEMG00000003517) #22	Slc6a14 (ENSPEMG00000022771) #23	ENSPEMG00000028133	ENSPEMG00000027715	ENSPEMG00000025640	ENSPEMG00000030303	ENSPEMG00000027120	ENSPEMG00000026541	ENSPEMG00000030325	Radx (ENSPEMG00000023178)	Rnf128 (ENSPEMG00000003063)	Tbc1d8b (ENSPEMG00000018650)	ENSPEMG00000017766	Cldn2 (ENSPEMG00000012046)	Morc4 (ENSPEMG00000008507)	Rbm41 (ENSPEMG00000015991)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1607																Agtr2 (ENSNGAG00000008929) #22