Mus_A	ANCESTRAL SPECIES	15	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.c #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b ##27	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00940000170289	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.c #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000157557 #26	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b ##27	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00940000170289	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686
Mouse	MODERN SPECIES	37	Ndufb11 (ENSMUSG00000031059) #7	Rbm10 (ENSMUSG00000031060) #8	Uba1 (ENSMUSG00000001924) #9	Cdk16 (ENSMUSG00000031065) #10	Usp11 (ENSMUSG00000031066) #11	Araf (ENSMUSG00000001127) #12	Syn1 (ENSMUSG00000037217) #13	Timp1 (ENSMUSG00000001131) #14	Cfp (ENSMUSG00000001128) #15	Elk1 (ENSMUSG00000009406) #16	Uxt (ENSMUSG00000001134) #17	Zfp182 (ENSMUSG00000054737) #18	Spaca5 (ENSMUSG00000037167) #19	Zfp300 (ENSMUSG00000031079) #20	Ssxa1 (ENSMUSG00000062814) #21	Agtr2 (ENSMUSG00000068122) #22	Slc6a14 (ENSMUSG00000031089) #23	Gm28269 (ENSMUSG00000101818) #24	Klhl13 (ENSMUSG00000036782) #25	Wdr44 (ENSMUSG00000036769) #26	Tesl1 (ENSMUSG00000068113) #27	Gm5934 (ENSMUSG00000084063) #28	Gm4297 (ENSMUSG00000081218) #29	Gm5935 (ENSMUSG00000093923) #30	Gm5169 (ENSMUSG00000096620) #31	Gm1993 (ENSMUSG00000073267) #32	Gm5168 (ENSMUSG00000079655) #33	Gm2012 (ENSMUSG00000082639) #34	Gm2030 (ENSMUSG00000083628) #35	Slx (ENSMUSG00000095063) #36	Gm14525 (ENSMUSG00000071788) #37
Mus_C	ANCESTRAL SPECIES	27	ENSGT00390000003022.s #7	ENSGT00940000160369 #8	ENSGT00940000158975 #9	ENSGT00940000156963.a.b #10	ENSGT00940000160485 #11	ENSGT00940000159633 #12	ENSGT00940000161978 #13	ENSGT00940000161081 #14	ENSGT00940000161209 #15	ENSGT00940000157571 #16	ENSGT00390000018078 #17	ENSGT00940000162614 #18	ENSGT00940000162205 #19	ENSGT00940000162921 #20	ENSGT00390000012484.d.f ##21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00860000135780 #24	ENSGT00940000154359.f #25	ENSGT00940000155993.d.b #27	ENSGT00940000155993.d.a.b ##27	ENSGT00940000155993.d.a.a.a ##27	ENSGT00940000155658	ENSGT00940000160896	ENSGT01030000234522.C.b.e.a.b.c	ENSGT00440000033329.b.a.b	ENSGT00940000170289	ENSGT00940000163031.b.a	ENSGT00940000160619	ENSGT00440000039314.b	ENSGT00940000160686
spretus	MODERN SPECIES	19	Rbm10 (MGP_SPRETEiJ_G0034113) #8	Uba1 (MGP_SPRETEiJ_G0034114) #9	Cdk16 (MGP_SPRETEiJ_G0034115) #10	Usp11 (MGP_SPRETEiJ_G0034116) #11	Araf (MGP_SPRETEiJ_G0034117) #12	Syn1 (MGP_SPRETEiJ_G0034118) #13	Timp1 (MGP_SPRETEiJ_G0034119) #14	Cfp (MGP_SPRETEiJ_G0034120) #15	Elk1 (MGP_SPRETEiJ_G0034121) #16	Uxt (MGP_SPRETEiJ_G0034122) #17	Zfp182 (MGP_SPRETEiJ_G0034123) #18	Spaca5 (MGP_SPRETEiJ_G0034124) #19	Zfp300 (MGP_SPRETEiJ_G0034125) #20	MGP_SPRETEiJ_G0034126 ##21	MGP_SPRETEiJ_G0034127	Agtr2 (MGP_SPRETEiJ_G0034128) #22	Slc6a14 (MGP_SPRETEiJ_G0034129) #23	Gm28269 (MGP_SPRETEiJ_G0034130) #24	Klhl13 (MGP_SPRETEiJ_G0034131) #25	MGP_SPRETEiJ_G0034132	MGP_SPRETEiJ_G0034133 #26	Tesl1 (MGP_SPRETEiJ_G0034134) #27	MGP_SPRETEiJ_G0034135 ##27	Dock11 (MGP_SPRETEiJ_G0034136)	Il13ra1 (MGP_SPRETEiJ_G0034137)	Zcchc12 (MGP_SPRETEiJ_G0034138)	Lonrf3 (MGP_SPRETEiJ_G0034139)	MGP_SPRETEiJ_G0034140	Gm14569 (MGP_SPRETEiJ_G0034141)	Pgrmc1 (MGP_SPRETEiJ_G0034142)	Akap17b (MGP_SPRETEiJ_G0034143)
Steppe mouse	MODERN SPECIES	1994																Agtr2 (ENSMSIG00000002524) #22
Ryukyu mouse	MODERN SPECIES	19	Rbm10 (MGP_CAROLIEiJ_G0032963) #8	Uba1 (MGP_CAROLIEiJ_G0032964) #9	Cdk16 (MGP_CAROLIEiJ_G0032965) #10	Usp11 (MGP_CAROLIEiJ_G0032966) #11	Araf (MGP_CAROLIEiJ_G0032967) #12	Syn1 (MGP_CAROLIEiJ_G0032968) #13	Timp1 (MGP_CAROLIEiJ_G0032969) #14	Cfp (MGP_CAROLIEiJ_G0032970) #15	Elk1 (MGP_CAROLIEiJ_G0032971) #16	Uxt (MGP_CAROLIEiJ_G0032972) #17	Zfp182 (MGP_CAROLIEiJ_G0032973) #18	Spaca5 (MGP_CAROLIEiJ_G0032974) #19	Zfp300 (MGP_CAROLIEiJ_G0032975) #20	Ssxa1 (MGP_CAROLIEiJ_G0032976) #21	MGP_CAROLIEiJ_G0032977 ##21	Agtr2 (MGP_CAROLIEiJ_G0032978) #22	Slc6a14 (MGP_CAROLIEiJ_G0032979) #23	Gm28269 (MGP_CAROLIEiJ_G0032980) #24	Klhl13 (MGP_CAROLIEiJ_G0032981) #25	Wdr44 (MGP_CAROLIEiJ_G0032982) #26	Dock11 (MGP_CAROLIEiJ_G0032983)	Il13ra1 (MGP_CAROLIEiJ_G0032984)	Zcchc12 (MGP_CAROLIEiJ_G0032985)	Lonrf3 (MGP_CAROLIEiJ_G0032986)	MGP_CAROLIEiJ_G0032987	Gm14569 (MGP_CAROLIEiJ_G0032988)	Pgrmc1 (MGP_CAROLIEiJ_G0032989)	Akap17b (MGP_CAROLIEiJ_G0032990)	Slc25a43 (MGP_CAROLIEiJ_G0032991)	Slc25a5 (MGP_CAROLIEiJ_G0032992)	Steep1 (MGP_CAROLIEiJ_G0032993)