Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT01060000248594.e.a	ENSGT00390000018248	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00390000018873 #24	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197 #37	ENSGT00940000155075.a.b.`b
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00940000159922.b	ENSGT00390000018248	ENSGT01060000248594.e.a	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT00390000010165.i.b.b.a #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00390000018873 #24	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197 #37	ENSGT00940000155075.a.b.`b
Hystricomorpha_a	ANCESTRAL SPECIES	65	ENSGT00940000160983	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00940000159922.b	ENSGT00390000018248	ENSGT01060000248594.e.a	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT00390000010165.i.b.b.a #21	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00390000018873 #24	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197 #37	ENSGT00940000155075.a.b.`b
Hystricomorpha_b	ANCESTRAL SPECIES	107																ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00390000018873 #24	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197 #37	ENSGT00940000155075.a.b.`b
Long-tailed chinchilla	MODERN SPECIES	241															ENSCLAG00000017619 #21	AGTR2 (ENSCLAG00000017599) #22	ENSCLAG00000008811 #23	ENSCLAG00000004474 #24	ENSCLAG00000008615 #25	KLHL13 (ENSCLAG00000007440) #26	WDR44 (ENSCLAG00000002582) #27	DOCK11 (ENSCLAG00000006793) #28	IL13RA1 (ENSCLAG00000006075) #29	ENSCLAG00000017563 #30	LONRF3 (ENSCLAG00000003297) #31	ENSCLAG00000002989 #32	PGRMC1 (ENSCLAG00000002952) #33	ENSCLAG00000002233 #34	SLC25A43 (ENSCLAG00000002149) #35	SLC25A5 (ENSCLAG00000004099) #36	STEEP1 (ENSCLAG00000003523) #37
Naked mole-rat female	MODERN SPECIES	31	LHFPL1 (ENSHGLG00000013759)	ENSHGLG00000012297	ENSHGLG00000013791	ENSHGLG00000035431	ENSHGLG00000035102	ENSHGLG00000001226	ENSHGLG00000041493	ENSHGLG00000001151	ENSHGLG00000001104	LRCH2 (ENSHGLG00000001011)	ENSHGLG00000028563	ENSHGLG00000039724	ENSHGLG00000000853	ENSHGLG00000019727 #21	ENSHGLG00000044858	ENSHGLG00000040362 #22	ENSHGLG00000043063	ENSHGLG00000001647 #23	ENSHGLG00000051011	ENSHGLG00000042774	ENSHGLG00000002833	ENSHGLG00000002893	KLHL13 (ENSHGLG00000003690) #26	ENSHGLG00000046500	ENSHGLG00000003366 #27	ENSHGLG00000033083	DOCK11 (ENSHGLG00000000806) #28	IL13RA1 (ENSHGLG00000001323) #29	ZCCHC12 (ENSHGLG00000036218) #30	LONRF3 (ENSHGLG00000002169) #31	ENSHGLG00000011436 #32
Sciuridae	ANCESTRAL SPECIES	27	ENSGT00950000182988.a.b.b.b	ENSGT00940000156128.b	ENSGT00940000161570	ENSGT00950000183232	ENSGT00510000047493	ENSGT00940000159922.b	ENSGT00390000018248	ENSGT01060000248594.e.a	ENSGT00940000163925	ENSGT00990000203589.a.b.a.b	ENSGT00940000159055	ENSGT01050000244937.a.b.a	ENSGT00940000159971	ENSGT00940000160039	ENSGT00950000183097.a.a.a	ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b.a #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197.t #37	ENSGT00940000155075.a.b.`b	ENSGT00940000157256
Marmotini	ANCESTRAL SPECIES	63																ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b.a #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197.t #37	ENSGT00940000155075.a.b.`b	ENSGT00940000157256	ENSGT00940000158026
Marmotini_b	ANCESTRAL SPECIES	78																ENSGT01050000244888.b.a.c.a #22	ENSGT00940000159688 #23	ENSGT00390000007430.r	ENSGT00940000154359.f #26	ENSGT00940000157557 #27	ENSGT00940000155658 #28	ENSGT00940000160896 #29	ENSGT01030000234522.C.b.e.a.b.a #30	ENSGT00440000033329.b.a.b #31	ENSGT00940000163031.b.a #32	ENSGT00940000160619 #33	ENSGT00440000039314.b #34	ENSGT00940000160686 #35	ENSGT00940000154400.b #36	ENSGT00390000002197.t #37	ENSGT00940000155075.a.b.`b
Arctic ground squirrel	MODERN SPECIES	785																AGTR2 (ENSUPAG00010005469) #22	ENSUPAG00010005475 #23
Squirrel	MODERN SPECIES	79	GARIN1B (ENSSTOG00000026261)	GARIN1A (ENSSTOG00000008506)	HILPDA (ENSSTOG00000029766)	IMPDH1 (ENSSTOG00000002177)	PRRT4 (ENSSTOG00000023582)	RBM28 (ENSSTOG00000002169)	LEP (ENSSTOG00000027970)	LRRC4 (ENSSTOG00000021081)	SND1 (ENSSTOG00000002140)	PAX4 (ENSSTOG00000002127)	FSCN3 (ENSSTOG00000002115)	ARF5 (ENSSTOG00000002104)	GCC1 (ENSSTOG00000002099)	ZNF800 (ENSSTOG00000023294)	GRM8 (ENSSTOG00000006490)	AGTR2 (ENSSTOG00000012524) #22	ENSSTOG00000007147 #23	ENSSTOG00000029519	KLHL13 (ENSSTOG00000012035) #26	WDR44 (ENSSTOG00000007251) #27	DOCK11 (ENSSTOG00000007295) #28	IL13RA1 (ENSSTOG00000024422) #29	ENSSTOG00000022238 #30	LONRF3 (ENSSTOG00000015024) #31	PGRMC1 (ENSSTOG00000024047) #33	SLC25A43 (ENSSTOG00000004872) #35	ENSSTOG00000020438 #36	STEEP1 (ENSSTOG00000011579) #37	UBE2A (ENSSTOG00000011583)	NKRF (ENSSTOG00000020483)	SEPTIN6 (ENSSTOG00000011593)
Alpin marmot	MODERN SPECIES	54																AGTR2 (ENSMMMG00000007695) #22	ENSMMMG00000007671 #23	ENSMMMG00000007666	KLHL13 (ENSMMMG00000007467) #26	WDR44 (ENSMMMG00000007422) #27	DOCK11 (ENSMMMG00000007293) #28	IL13RA1 (ENSMMMG00000007276) #29	ENSMMMG00000007268 #30	ENSMMMG00000007240 #31	ENSMMMG00000007229 #33	ENSMMMG00000007220 #34	SLC25A43 (ENSMMMG00000007207) #35	SLC25A5 (ENSMMMG00000007201) #36	ENSMMMG00000007184 #37	UBE2A (ENSMMMG00000007093)	NKRF (ENSMMMG00000007091)
Eurasian red squirrel	MODERN SPECIES	156	AMOT (ENSSVLG00005013525)	ENSSVLG00005019330	ENSSVLG00005019275	ENSSVLG00005019228	ENSSVLG00005019177	ENSSVLG00005019126	ENSSVLG00005019077	HTR2C (ENSSVLG00005018984)	ENSSVLG00005018928	IL13RA2 (ENSSVLG00005018862)	LRCH2 (ENSSVLG00005018464)	ENSSVLG00005018369	ENSSVLG00005018340	PLS3 (ENSSVLG00005018046)	ENSSVLG00005017980	AGTR2 (ENSSVLG00005017968) #22	ENSSVLG00005017948 ##21	ENSSVLG00005017904	SLC6A14 (ENSSVLG00005017746)	CT83 (ENSSVLG00005017691) #24	ENSSVLG00005017648	KLHL13 (ENSSVLG00005017370) #26	WDR44 (ENSSVLG00005017220) #27	DOCK11 (ENSSVLG00005016279) #28	IL13RA1 (ENSSVLG00005016116) #29	ENSSVLG00005016098 #30	ENSSVLG00005016082	LONRF3 (ENSSVLG00005015856) #31	ENSSVLG00005015710 #32	PGRMC1 (ENSSVLG00005015662) #33	ENSSVLG00005015613 #34