Mus	ANCESTRAL SPECIES	5	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335 #18	ENSGT00940000156056.A	ENSGT00950000182910.a.a.a #19	ENSGT00940000155812 #20	ENSGT00940000155752 #21	ENSGT01050000244905.D #22	ENSGT01050000244905.E #23	ENSGT00390000010463.a.b #24	ENSGT00390000006330.a.a #25	ENSGT00390000002174.b #26	ENSGT00530000063599.B #27	ENSGT00940000156785 #28	ENSGT00890000139491 #29	ENSGT00390000011537 #30	ENSGT00940000160657 #31	ENSGT00640000092813 #32	ENSGT00940000157085 #33	ENSGT00950000183178.b.a #34	ENSGT00940000153744.A #35	ENSGT00390000012446 #37	ENSGT00390000015143 #17
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335 #18	ENSGT00940000156056.A	ENSGT00950000182910.a.a.a #19	ENSGT00940000155812 #20	ENSGT00940000155752 #21	ENSGT01050000244905.D #22	ENSGT01050000244905.E #23	ENSGT00390000010463.a.b #24	ENSGT00390000006330.a.a #25	ENSGT00390000002174.b #26	ENSGT00530000063599.B #27	ENSGT00940000156785 #28	ENSGT00890000139491 #29	ENSGT00390000011537 #30	ENSGT00940000160657 #31	ENSGT00640000092813 #32	ENSGT00940000157085 #33	ENSGT00950000183178.b.a #34	ENSGT00940000153744.A #35	ENSGT00390000012446 #37	ENSGT00390000015143 #17
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000155367	ENSGT00390000018393	ENSGT00950000182908.D	ENSGT00390000016484	ENSGT00390000009468	ENSGT00390000016929.b	ENSGT00390000005285	ENSGT00940000155466	ENSGT00940000154014.b.b	ENSGT00940000155282	ENSGT00940000160335 #18	ENSGT00940000156056.A	ENSGT00950000182910.a.a.a #19	ENSGT00940000155812 #20	ENSGT00940000155752 #21	ENSGT01050000244905.D #22	ENSGT01050000244905.E #23	ENSGT00390000010463.a.b #24	ENSGT00390000006330.a.a #25	ENSGT00390000002174.b #26	ENSGT00530000063599.B #27	ENSGT00940000156785 #28	ENSGT00890000139491 #29	ENSGT00390000011537 #30	ENSGT00940000160657 #31	ENSGT00640000092813 #32	ENSGT00940000157085 #33	ENSGT00950000183178.b.a #34	ENSGT00940000153744.A #35	ENSGT00390000012446 #37	ENSGT01030000234770
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163791	ENSGT00940000162655	ENSGT00940000158318 #7	ENSGT00510000048601.a ##9	ENSGT00510000048601.b #9	ENSGT00940000159229 #10	ENSGT00940000156186 #11	ENSGT00940000161229 #12	ENSGT00940000155675 #13	ENSGT00390000006303 #14	ENSGT00390000015143 #17	ENSGT00940000160335 #18	ENSGT00950000182910.a.a.a #19	ENSGT00940000155812 #20	ENSGT00940000155752 #21	ENSGT01050000244905.D #22	ENSGT01050000244905.E #23	ENSGT00390000010463.a.b #24	ENSGT00390000006330.a.a #25	ENSGT00390000002174.b #26	ENSGT00530000063599.B #27	ENSGT00940000156785 #28	ENSGT00890000139491 #29	ENSGT00390000011537 #30	ENSGT00940000160657 #31	ENSGT00640000092813 #32	ENSGT00940000157085 #33	ENSGT00950000183178.b.a #34	ENSGT00940000153744.A #35	ENSGT00390000012446 #37	ENSGT01030000234770
spretus	MODERN SPECIES		Poglut2 (MGP_SPRETEiJ_G0014904) #7	MGP_SPRETEiJ_G0014905 #8	Ercc5 (MGP_SPRETEiJ_G0014906) #9	Mettl21e (MGP_SPRETEiJ_G0014907) #10	Gulp1 (MGP_SPRETEiJ_G0014908) #11	Col3a1 (MGP_SPRETEiJ_G0014909) #12	Col5a2 (MGP_SPRETEiJ_G0014910) #13	Wdr75 (MGP_SPRETEiJ_G0014911) #14	MGP_SPRETEiJ_G0014912 #15	MGP_SPRETEiJ_G0014914 #16	Slc40a1 (MGP_SPRETEiJ_G0014915) #17	MGP_SPRETEiJ_G0014918 #18	Cavin2 (MGP_SPRETEiJ_G0014920) #19	Nabp1 (MGP_SPRETEiJ_G0014921) #20	Myo1b (MGP_SPRETEiJ_G0014922) #21	Stat4 (MGP_SPRETEiJ_G0014923) #22	Stat1 (MGP_SPRETEiJ_G0014924) #23	Gls (MGP_SPRETEiJ_G0014925) #24	Nab1 (MGP_SPRETEiJ_G0014926) #25	Nemp2 (MGP_SPRETEiJ_G0014927) #26	Mfsd6 (MGP_SPRETEiJ_G0014928) #27	MGP_SPRETEiJ_G0014929 #28	Hibch (MGP_SPRETEiJ_G0014930) #29	1700019D03Rik (MGP_SPRETEiJ_G0014931) #30	Mstn (MGP_SPRETEiJ_G0014932) #31	1700019A02Rik (MGP_SPRETEiJ_G0014933) #32	MGP_SPRETEiJ_G0014934 #33	MGP_SPRETEiJ_G0014936 #34	Osgepl1 (MGP_SPRETEiJ_G0014937) #35	MGP_SPRETEiJ_G0014938 #36	MGP_SPRETEiJ_G0014939 #37
Steppe mouse	MODERN SPECIES	3069												Cavin2 (ENSMSIG00000002817) #19	Nabp1 (ENSMSIG00000002845) #20	Myo1b (ENSMSIG00000002947) #21	ENSMSIG00000003493	Stat4 (ENSMSIG00000003531) #22	Stat1 (ENSMSIG00000003699) #23	Gls (ENSMSIG00000003887) #24	Nab1 (ENSMSIG00000004120) #25	Nemp2 (ENSMSIG00000004210) #26	Mfsd6 (ENSMSIG00000004307) #27	Inpp1 (ENSMSIG00000004356) #28	Hibch (ENSMSIG00000004370) #29	1700019D03Rik (ENSMSIG00000004484) #30	Mstn (ENSMSIG00000004501) #31	ENSMSIG00000004533	Pms1 (ENSMSIG00000004545) #33	Ormdl1 (ENSMSIG00000004573) #34	Osgepl1 (ENSMSIG00000004593) #35	Asnsd1 (ENSMSIG00000004638) #37	Gm50478 (ENSMSIG00000004658)
Mouse	MODERN SPECIES		Bivm (ENSMUSG00000041684) ##9	Ercc5 (ENSMUSG00000026048) #9	Mettl21e (ENSMUSG00000046828) #10	Gulp1 (ENSMUSG00000056870) #11	Col3a1 (ENSMUSG00000026043) #12	Col5a2 (ENSMUSG00000026042) #13	Wdr75 (ENSMUSG00000025995) #14	Slc40a1 (ENSMUSG00000025993) #17	Dnah7b (ENSMUSG00000041144)	Dnah7c (ENSMUSG00000101337)	Slc39a10 (ENSMUSG00000025986) #18	Tmeff2 (ENSMUSG00000026109)	Cavin2 (ENSMUSG00000045954) #19	Nabp1 (ENSMUSG00000026107) #20	Myo1b (ENSMUSG00000018417) #21	Stat4 (ENSMUSG00000062939) #22	Stat1 (ENSMUSG00000026104) #23	Gls (ENSMUSG00000026103) #24	Nab1 (ENSMUSG00000002881) #25	Nemp2 (ENSMUSG00000043015) #26	Mfsd6 (ENSMUSG00000041439) #27	Inpp1 (ENSMUSG00000026102) #28	Hibch (ENSMUSG00000041426) #29	1700019D03Rik (ENSMUSG00000043629) #30	Mstn (ENSMUSG00000026100) #31	1700019A02Rik (ENSMUSG00000060715) #32	Pms1 (ENSMUSG00000026098) #33	Ormdl1 (ENSMUSG00000026097) #34	Gm28778 (ENSMUSG00000100679)	Osgepl1 (ENSMUSG00000026096) #35	Asnsd1 (ENSMUSG00000026095) #37
Ryukyu mouse	MODERN SPECIES		MGP_CAROLIEiJ_G0014144	Hspd1 (MGP_CAROLIEiJ_G0014143)	Coq10b (MGP_CAROLIEiJ_G0014142)	Sf3b1 (MGP_CAROLIEiJ_G0014141)	Ankrd44 (MGP_CAROLIEiJ_G0014140)	Pgap1 (MGP_CAROLIEiJ_G0014139)	MGP_CAROLIEiJ_G0014138	Ccdc150 (MGP_CAROLIEiJ_G0014137)	Hecw2 (MGP_CAROLIEiJ_G0014136)	Stk17b (MGP_CAROLIEiJ_G0014135)	MGP_CAROLIEiJ_G0014134 #18	Tmeff2 (MGP_CAROLIEiJ_G0014133)	Cavin2 (MGP_CAROLIEiJ_G0014132) #19	Nabp1 (MGP_CAROLIEiJ_G0014131) #20	Myo1b (MGP_CAROLIEiJ_G0014130) #21	Stat4 (MGP_CAROLIEiJ_G0014129) #22	Stat1 (MGP_CAROLIEiJ_G0014128) #23	Gls (MGP_CAROLIEiJ_G0014127) #24	Nab1 (MGP_CAROLIEiJ_G0014126) #25	Nemp2 (MGP_CAROLIEiJ_G0014125) #26	Mfsd6 (MGP_CAROLIEiJ_G0014124) #27	Inpp1 (MGP_CAROLIEiJ_G0014123) #28	Hibch (MGP_CAROLIEiJ_G0014122) #29	1700019D03Rik (MGP_CAROLIEiJ_G0014121) #30	Mstn (MGP_CAROLIEiJ_G0014120) #31	1700019A02Rik (MGP_CAROLIEiJ_G0014119) #32	Pms1 (MGP_CAROLIEiJ_G0014118) #33	Ormdl1 (MGP_CAROLIEiJ_G0014117) #34	MGP_CAROLIEiJ_G0014116 #34	Osgepl1 (MGP_CAROLIEiJ_G0014115) #35	MGP_CAROLIEiJ_G0014114 #37
Shrew mouse	MODERN SPECIES	18	Bivm (MGP_PahariEiJ_G0027344) ##9	Ercc5 (MGP_PahariEiJ_G0027345) #9	Mettl21e (MGP_PahariEiJ_G0027346) #10	Gulp1 (MGP_PahariEiJ_G0027347) #11	Col3a1 (MGP_PahariEiJ_G0027348) #12	Col5a2 (MGP_PahariEiJ_G0027349) #13	MGP_PahariEiJ_G0027350	Wdr75 (MGP_PahariEiJ_G0027351) #14	MGP_PahariEiJ_G0027352	Slc40a1 (MGP_PahariEiJ_G0027353) #17	Slc39a10 (MGP_PahariEiJ_G0027354) #18	Tmeff2 (MGP_PahariEiJ_G0027355)	Cavin2 (MGP_PahariEiJ_G0027356) #19	Nabp1 (MGP_PahariEiJ_G0027357) #20	Myo1b (MGP_PahariEiJ_G0027358) #21	Stat4 (MGP_PahariEiJ_G0027359) #22	Stat1 (MGP_PahariEiJ_G0027360) #23	Gls (MGP_PahariEiJ_G0027361) #24	Nab1 (MGP_PahariEiJ_G0027362) #25	Nemp2 (MGP_PahariEiJ_G0027363) #26	Mfsd6 (MGP_PahariEiJ_G0027364) #27	MGP_PahariEiJ_G0027365 #28	Hibch (MGP_PahariEiJ_G0027366) #29	1700019D03Rik (MGP_PahariEiJ_G0027367) #30	Mstn (MGP_PahariEiJ_G0027368) #31	Pms1 (MGP_PahariEiJ_G0027369) #33	MGP_PahariEiJ_G0027370 #34	Osgepl1 (MGP_PahariEiJ_G0027371) #35	MGP_PahariEiJ_G0027372 #37	MGP_PahariEiJ_G0027373 #37	Stk17b (MGP_PahariEiJ_G0027374)