Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00520000058758	ENSGT00390000016042	ENSGT00390000017848	ENSGT00940000156914	ENSGT00390000008264	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00940000153289.a.a.a
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00390000016042	ENSGT00390000017848	ENSGT00940000156914	ENSGT00390000008264	ENSGT00940000156008	ENSGT01030000234539.b.b.b	ENSGT00390000000153.l.a	ENSGT00930000151028	ENSGT00940000155303	ENSGT00940000154935	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091.a #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Marmotini_b	ANCESTRAL SPECIES	249										ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091.a #20	ENSGT00940000161631.g #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Arctic ground squirrel	MODERN SPECIES	339											SH2D4B (ENSUPAG00010002361) #17	TSPAN14 (ENSUPAG00010002338) #18	PRXL2A (ENSUPAG00010002323) #19	ENSUPAG00010002313 #20	ENSUPAG00010002305 #21	MAT1A (ENSUPAG00010002295) #22	ENSUPAG00010002288 #23	ENSUPAG00010002281 #24	SFTPD (ENSUPAG00010002275) #25	ENSUPAG00010002270 #26
Squirrel	MODERN SPECIES	316										ENSSTOG00000022933	SH2D4B (ENSSTOG00000003332) #17	TSPAN14 (ENSSTOG00000012873) #18	PRXL2A (ENSSTOG00000012864) #19	DYDC2 (ENSSTOG00000012860) #20	DYDC1 (ENSSTOG00000012858) #21	MAT1A (ENSSTOG00000007082) #22	ENSSTOG00000030982 #23	ENSSTOG00000022645 #24	SFTPD (ENSSTOG00000020181) #25
Alpin marmot	MODERN SPECIES	66	WAPL (ENSMMMG00000011412)	GRID1 (ENSMMMG00000011366)	CCSER2 (ENSMMMG00000011155)	RGR (ENSMMMG00000011130)	LRIT1 (ENSMMMG00000011121)	LRIT2 (ENSMMMG00000011116)	CDHR1 (ENSMMMG00000011089)	GPR15LG (ENSMMMG00000011077)	GHITM (ENSMMMG00000011060)	NRG3 (ENSMMMG00000010985)	SH2D4B (ENSMMMG00000010944) #17	TSPAN14 (ENSMMMG00000010918) #18	PRXL2A (ENSMMMG00000010895) #19	ENSMMMG00000010884 #20	DYDC1 (ENSMMMG00000010873) #21	MAT1A (ENSMMMG00000010849) #22	ENSMMMG00000010829 #23	ENSMMMG00000010822 #24	SFTPD (ENSMMMG00000010810) #25	ENSMMMG00000010806
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005003751	CCSER2 (ENSSVLG00005003778)	RGR (ENSSVLG00005003817)	LRIT1 (ENSSVLG00005003867)	LRIT2 (ENSSVLG00005003885)	CDHR1 (ENSSVLG00005003916)	GPR15LG (ENSSVLG00005003966)	GHITM (ENSSVLG00005003987)	NRG3 (ENSSVLG00005004056)	ENSSVLG00005004095	SH2D4B (ENSSVLG00005004103) #17	TSPAN14 (ENSSVLG00005004151) #18	PRXL2A (ENSSVLG00005004219) #19	DYDC2 (ENSSVLG00005004236) #20	DYDC1 (ENSSVLG00005004260) #21	MAT1A (ENSSVLG00005004294) #22	ENSSVLG00005004335 #23	ENSSVLG00005004372 #24	SFTPD (ENSSVLG00005004412) #25	ENSSVLG00005004436	ENSSVLG00005006012	ENSSVLG00005006036	ENSSVLG00005006056	ENSSVLG00005006085	ENSSVLG00005006106	ENSSVLG00005006135	ENSSVLG00005006190	TMEM254 (ENSSVLG00005006215)	PLAC9 (ENSSVLG00005006256)	ANXA11 (ENSSVLG00005006301)	ENSSVLG00005006337
Hystricomorpha	ANCESTRAL SPECIES	56	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT00390000015172	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Hystricomorpha_a	ANCESTRAL SPECIES	62	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT01030000237896	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Guinea pig	MODERN SPECIES	62	WAPL (ENSCPOG00000012961)	GRID1 (ENSCPOG00000010412)	CCSER2 (ENSCPOG00000003617)	RGR (ENSCPOG00000022556)	LRIT1 (ENSCPOG00000015393)	LRIT2 (ENSCPOG00000015390)	CDHR1 (ENSCPOG00000005235)	ENSCPOG00000034121	GHITM (ENSCPOG00000006432)	NRG3 (ENSCPOG00000012186)	SH2D4B (ENSCPOG00000003471) #17	TSPAN14 (ENSCPOG00000009896) #18	PRXL2A (ENSCPOG00000006552) #19	DYDC2 (ENSCPOG00000035691) #20	DYDC1 (ENSCPOG00000006995) #21	MAT1A (ENSCPOG00000013447) #22	ENSCPOG00000032092 #23	ENSCPOG00000027540 #24	SFTPD (ENSCPOG00000007463) #25
Hystricomorpha_b	ANCESTRAL SPECIES	87	ENSGT00390000015768	ENSGT00940000155910	ENSGT00940000153912.A	ENSGT01090000260051.b.a.a.b.b	ENSGT00940000156033	ENSGT00940000159143	ENSGT00940000155509	ENSGT01030000237896	ENSGT01050000244940.a.b	ENSGT00940000156754.a.b	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Long-tailed chinchilla	MODERN SPECIES	217	WAPL (ENSCLAG00000000189)	GRID1 (ENSCLAG00000000120)	CCSER2 (ENSCLAG00000000521)	RGR (ENSCLAG00000000310)	LRIT1 (ENSCLAG00000000263)	LRIT2 (ENSCLAG00000000247)	CDHR1 (ENSCLAG00000000482)	ENSCLAG00000000449	GHITM (ENSCLAG00000000416)	NRG3 (ENSCLAG00000001117)	SH2D4B (ENSCLAG00000000290) #17	TSPAN14 (ENSCLAG00000000279) #18	PRXL2A (ENSCLAG00000000254) #19	DYDC2 (ENSCLAG00000000143) #20	DYDC1 (ENSCLAG00000000126) #21	MAT1A (ENSCLAG00000000085) #22	ENSCLAG00000000065 #23	ENSCLAG00000000944 #24	SFTPD (ENSCLAG00000000893) #25
Degu	MODERN SPECIES	173	CCSER2 (ENSODEG00000010793)	RGR (ENSODEG00000011393)	LRIT1 (ENSODEG00000012611)	LRIT2 (ENSODEG00000011609)	CDHR1 (ENSODEG00000010766)	ENSODEG00000012481	ENSODEG00000011340	ENSODEG00000012959	NRG3 (ENSODEG00000011562)	SH2D4B (ENSODEG00000013141) #17	TSPAN14 (ENSODEG00000010478) #18	PRXL2A (ENSODEG00000012446) #19	ENSODEG00000019887	DYDC2 (ENSODEG00000010966) #20	DYDC1 (ENSODEG00000010939) #21	MAT1A (ENSODEG00000011227) #22	ENSODEG00000011120 #23	ENSODEG00000011470 #24	ENSODEG00000010292 #25
Naked mole-rat female	MODERN SPECIES	7	LRIT2 (ENSHGLG00000012056)	CDHR1 (ENSHGLG00000012222)	GPR15LG (ENSHGLG00000050798)	ENSHGLG00000004941	ENSHGLG00000042835	ENSHGLG00000033515	ENSHGLG00000041944	ENSHGLG00000006241	SH2D4B (ENSHGLG00000007947) #17	TSPAN14 (ENSHGLG00000008596) #18	PRXL2A (ENSHGLG00000008942) #19	ENSHGLG00000048071	ENSHGLG00000048270	ENSHGLG00000005445 #20	DYDC1 (ENSHGLG00000005866) #21	ENSHGLG00000007667 #22	ENSHGLG00000009001	ENSHGLG00000010093 #23	ENSHGLG00000036564 #24	ENSHGLG00000032865	ENSHGLG00000008417 #25	ENSHGLG00000008456	ENSHGLG00000037791	ENSHGLG00000020952	ENSHGLG00000045248	ENSHGLG00000034451	ENSHGLG00000034932	ENSHGLG00000025275	ENSHGLG00000045404	ENSHGLG00000019982	ENSHGLG00000002153