Glires	ANCESTRAL SPECIES	16	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000165487 #28	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Rodentia	ANCESTRAL SPECIES	16	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000165487 #28	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Rodentia_B	ANCESTRAL SPECIES	10	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000165487 #28	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Myomorpha	ANCESTRAL SPECIES	15	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000165487 #28	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a	ENSGT00390000004409
Lesser Egyptian jerboa	MODERN SPECIES	64	Bmpr1a (ENSJJAG00000021938) #7	Ldb3 (ENSJJAG00000018553) #8	Wapl (ENSJJAG00000000624) #9	ENSJJAG00000017435 #10	Ccser2 (ENSJJAG00000010060) #11	Rgr (ENSJJAG00000019791) #12	Lrit1 (ENSJJAG00000010600) #13	Cdhr1 (ENSJJAG00000019113) #14	ENSJJAG00000016988 #15	Nrg3 (ENSJJAG00000010166) #16	Sh2d4b (ENSJJAG00000001387) #17	Tspan14 (ENSJJAG00000023639) #18	Prxl2a (ENSJJAG00000021962) #19	Dydc2 (ENSJJAG00000010678) #20	Dydc1 (ENSJJAG00000017106) #21	Mat1a (ENSJJAG00000022624) #22	Sftpa1 (ENSJJAG00000018997) #23	Mbl1 (ENSJJAG00000015405) #24	Sftpd (ENSJJAG00000023114) #25	Duxbl1 (ENSJJAG00000021637) #26	Tmem254 (ENSJJAG00000024320) #27	ENSJJAG00000013392 #28	Anxa11 (ENSJJAG00000016249) #29	Zcchc24 (ENSJJAG00000010391) #30	Ppif (ENSJJAG00000011851) #31	Zmiz1 (ENSJJAG00000016307) #32	ENSJJAG00000007712 #33	ENSJJAG00000016217 #34	ENSJJAG00000006291 #35	ENSJJAG00000019119 #36	Kcnma1 (ENSJJAG00000015287) #37
Muroidea	ANCESTRAL SPECIES	62	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Muroidea_A	ANCESTRAL SPECIES	10	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Murinae	ANCESTRAL SPECIES	26	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Mus	ANCESTRAL SPECIES	8	ENSGT00940000153181.z.g.b.a	ENSGT00940000153181.z.g.b.b	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT01050000244902.b.c.b	ENSGT01050000244902.b.c.a	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859	ENSGT00390000008666	ENSGT00390000013444.a.a	ENSGT00940000156065	ENSGT00860000135823	ENSGT00940000159502
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000153181.z.g.b.a	ENSGT00940000153181.z.g.b.b	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT01050000244902.b.c.b	ENSGT01050000244902.b.c.a	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859	ENSGT00390000008666	ENSGT00390000013444.a.a	ENSGT00940000156065	ENSGT00860000135823	ENSGT00940000159502
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000153181.z.g.b.a	ENSGT00940000153181.z.g.b.b	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT01050000244902.b.c.b	ENSGT01050000244902.b.c.a	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859	ENSGT00390000008666	ENSGT00390000013444.a.a	ENSGT00940000156065	ENSGT00860000135823	ENSGT00940000159502
Mus_C	ANCESTRAL SPECIES	26	ENSGT00940000155910 #10	ENSGT00940000153181.z.g.b.a	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT01050000244902.b.c.a	ENSGT00390000006080	ENSGT00940000153986.a	ENSGT00390000007753.b	ENSGT01020000230346.A	ENSGT00940000154859	ENSGT00390000008666	ENSGT00390000013444.a.a	ENSGT00940000156065	ENSGT00860000135823	ENSGT00940000159502	ENSGT00390000004717
spretus	MODERN SPECIES	5	4930596D02Rik (MGP_SPRETEiJ_G0020013)	4930474N05Rik (MGP_SPRETEiJ_G0020014)	Ccser2 (MGP_SPRETEiJ_G0020015) #11	Rgr (MGP_SPRETEiJ_G0020016) #12	Lrit1 (MGP_SPRETEiJ_G0020017) #13	Lrit2 (MGP_SPRETEiJ_G0020018)	Cdhr1 (MGP_SPRETEiJ_G0020019) #14	Gpr15lg (MGP_SPRETEiJ_G0020020)	Ghitm (MGP_SPRETEiJ_G0020021) #15	Nrg3 (MGP_SPRETEiJ_G0020022) #16	Sh2d4b (MGP_SPRETEiJ_G0020023) #17	Tspan14 (MGP_SPRETEiJ_G0020024) #18	Prxl2a (MGP_SPRETEiJ_G0020025) #19	Dydc2 (MGP_SPRETEiJ_G0020026) #20	Dydc1 (MGP_SPRETEiJ_G0020027) #21	Mat1a (MGP_SPRETEiJ_G0020028) #22	Sftpa1 (MGP_SPRETEiJ_G0020029) #23	Mbl1 (MGP_SPRETEiJ_G0020030) #24	Sftpd (MGP_SPRETEiJ_G0020031) #25	Ptger2 (MGP_SPRETEiJ_G0020032)	Txndc16 (MGP_SPRETEiJ_G0020033)	Gpr137c (MGP_SPRETEiJ_G0020034)	Ero1a (MGP_SPRETEiJ_G0020035)	Psmc6 (MGP_SPRETEiJ_G0020036)	MGP_SPRETEiJ_G0020037	MGP_SPRETEiJ_G0020038	MGP_SPRETEiJ_G0020039	Gnpnat1 (MGP_SPRETEiJ_G0020040)	MGP_SPRETEiJ_G0020041	Ddhd1 (MGP_SPRETEiJ_G0020042)	MGP_SPRETEiJ_G0020043
Steppe mouse	MODERN SPECIES	3252								ENSMSIG00000025657	Nrg3 (ENSMSIG00000025571) #16	ENSMSIG00000025550	Sh2d4b (ENSMSIG00000025469) #17	Tspan14 (ENSMSIG00000025446) #18	Prxl2a (ENSMSIG00000025436) #19	Dydc2 (ENSMSIG00000025426) #20	Dydc1 (ENSMSIG00000025391) #21	Mat1a (ENSMSIG00000025378) #22	Sftpa1 (ENSMSIG00000025366) #23	Mbl1 (ENSMSIG00000025362) #24	Sftpd (ENSMSIG00000025333) #25
Mouse	MODERN SPECIES	5	4930596D02Rik (ENSMUSG00000041068)	4930474N05Rik (ENSMUSG00000096405)	Ccser2 (ENSMUSG00000058690) #11	Rgr (ENSMUSG00000021804) #12	Lrit1 (ENSMUSG00000041044) #13	Lrit2 (ENSMUSG00000043418)	Cdhr1 (ENSMUSG00000021803) #14	Gpr15lg (ENSMUSG00000096001)	Ghitm (ENSMUSG00000041028) #15	Nrg3 (ENSMUSG00000041014) #16	Sh2d4b (ENSMUSG00000037833) #17	Tspan14 (ENSMUSG00000037824) #18	Prxl2a (ENSMUSG00000021792) #19	Dydc2 (ENSMUSG00000021791) #20	Dydc1 (ENSMUSG00000021790) #21	Mat1a (ENSMUSG00000037798) #22	Sftpa1 (ENSMUSG00000021789) #23	Mbl1 (ENSMUSG00000037780) #24	Sftpd (ENSMUSG00000021795) #25	Gm2832 (ENSMUSG00000091110)	Gm5798 (ENSMUSG00000094925)	Gm3486 (ENSMUSG00000090505)	1700049E17Rik2 (ENSMUSG00000090440)	Gm3676 (ENSMUSG00000079269)	Gm47189 (ENSMUSG00000114852)	1700049E17Rik1 (ENSMUSG00000079271)	1700024B05Rik (ENSMUSG00000052334)	Gm3543 (ENSMUSG00000093945)	Gm3573 (ENSMUSG00000091792)	Gm17026 (ENSMUSG00000092152)	Gm7995 (ENSMUSG00000094157)
Ryukyu mouse	MODERN SPECIES	5	Lrit2 (MGP_CAROLIEiJ_G0019132)	Cdhr1 (MGP_CAROLIEiJ_G0019133) #14	Gpr15lg (MGP_CAROLIEiJ_G0019134)	Ghitm (MGP_CAROLIEiJ_G0019135) #15	Nrg3 (MGP_CAROLIEiJ_G0019136) #16	MGP_CAROLIEiJ_G0002209	MGP_CAROLIEiJ_G0002210	MGP_CAROLIEiJ_G0002211	MGP_CAROLIEiJ_G0002212	MGP_CAROLIEiJ_G0002213	Sh2d4b (MGP_CAROLIEiJ_G0019137) #17	Tspan14 (MGP_CAROLIEiJ_G0019138) #18	Prxl2a (MGP_CAROLIEiJ_G0019139) #19	Dydc2 (MGP_CAROLIEiJ_G0019140) #20	Dydc1 (MGP_CAROLIEiJ_G0019141) #21	Mat1a (MGP_CAROLIEiJ_G0019142) #22	Sftpa1 (MGP_CAROLIEiJ_G0019143) #23	Mbl1 (MGP_CAROLIEiJ_G0019144) #24	Sftpd (MGP_CAROLIEiJ_G0019145) #25	Ptger2 (MGP_CAROLIEiJ_G0019146)	Txndc16 (MGP_CAROLIEiJ_G0019147)	Gpr137c (MGP_CAROLIEiJ_G0019148)	Ero1a (MGP_CAROLIEiJ_G0019149)	Psmc6 (MGP_CAROLIEiJ_G0019150)	MGP_CAROLIEiJ_G0019151	Gnpnat1 (MGP_CAROLIEiJ_G0019152)	Fermt2 (MGP_CAROLIEiJ_G0019153)	Ddhd1 (MGP_CAROLIEiJ_G0019154)	MGP_CAROLIEiJ_G0019155	Bmp4 (MGP_CAROLIEiJ_G0019156)	Cdkn3 (MGP_CAROLIEiJ_G0019157)
Shrew mouse	MODERN SPECIES	21	Grid1 (MGP_PahariEiJ_G0030143) #10	4930596D02Rik (MGP_PahariEiJ_G0030144)	Ccser2 (MGP_PahariEiJ_G0030145) #11	Rgr (MGP_PahariEiJ_G0030146) #12	Lrit1 (MGP_PahariEiJ_G0030147) #13	Lrit2 (MGP_PahariEiJ_G0030148)	Cdhr1 (MGP_PahariEiJ_G0030149) #14	Gpr15lg (MGP_PahariEiJ_G0030150)	Ghitm (MGP_PahariEiJ_G0030151) #15	Nrg3 (MGP_PahariEiJ_G0030152) #16	Sh2d4b (MGP_PahariEiJ_G0030153) #17	Tspan14 (MGP_PahariEiJ_G0030154) #18	Prxl2a (MGP_PahariEiJ_G0030155) #19	Dydc2 (MGP_PahariEiJ_G0030156) #20	Dydc1 (MGP_PahariEiJ_G0030157) #21	Mat1a (MGP_PahariEiJ_G0030158) #22	Sftpa1 (MGP_PahariEiJ_G0030159) #23	Mbl1 (MGP_PahariEiJ_G0030160) #24	Sftpd (MGP_PahariEiJ_G0030161) #25	Ptgdr (MGP_PahariEiJ_G0030162)	Ptger2 (MGP_PahariEiJ_G0030163)	Txndc16 (MGP_PahariEiJ_G0030164)	Gpr137c (MGP_PahariEiJ_G0030165)	Ero1a (MGP_PahariEiJ_G0030166)	Psmc6 (MGP_PahariEiJ_G0030167)	MGP_PahariEiJ_G0030168	Gnpnat1 (MGP_PahariEiJ_G0030169)	Fermt2 (MGP_PahariEiJ_G0030170)	Ddhd1 (MGP_PahariEiJ_G0030171)	MGP_PahariEiJ_G0030172	Bmp4 (MGP_PahariEiJ_G0030173)
Rat	MODERN SPECIES	7	LOC120097423 (ENSRNOG00000065891)	LOC120097531 (ENSRNOG00000065076)	Eloa2l (ENSRNOG00000066342)	Eloa-ps3 (ENSRNOG00000067867)	Eloa-ps1 (ENSRNOG00000067535)	EloaA2l1 (ENSRNOG00000063161)	Nrg3 (ENSRNOG00000063450) #16	RGD1564958 (ENSRNOG00000028958)	ENSRNOG00000065936	LOC100363321 (ENSRNOG00000062821)	Sh2d4b (ENSRNOG00000042623) #17	Tspan14 (ENSRNOG00000010813) #18	Prxl2a (ENSRNOG00000011140) #19	Dydc2 (ENSRNOG00000039591) #20	Dydc1 (ENSRNOG00000011165) #21	Mat1a (ENSRNOG00000011351) #22	Sftpa1 (ENSRNOG00000011438) #23	Mbl1 (ENSRNOG00000011706) #24	Sftpd (ENSRNOG00000056001) #25	F2rl3 (ENSRNOG00000068093)	Sin3b (ENSRNOG00000048622)	Nwd1 (ENSRNOG00000052129)	Tmem38a (ENSRNOG00000011912)	Smim7 (ENSRNOG00000042037)	Med26 (ENSRNOG00000012270)	Slc35e1 (ENSRNOG00000012287)	Cherp (ENSRNOG00000012323)	C16h19orf44 (ENSRNOG00000023700)	Calr3 (ENSRNOG00000013260)	Eps15l1 (ENSRNOG00000013502)	Klf2 (ENSRNOG00000067705)
Cricetidae	ANCESTRAL SPECIES	31	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000160242	ENSGT00940000155985	ENSGT00940000156415	ENSGT00940000159705	ENSGT00910000144184.q.a.h	ENSGT00940000155168.a.b	ENSGT00940000156809.b	ENSGT00940000156196	ENSGT00940000157921	ENSGT00390000006540	ENSGT00940000157768	ENSGT00940000157780
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000160242	ENSGT00940000155985	ENSGT00940000156415	ENSGT00940000159705	ENSGT00910000144184.q.a.h	ENSGT00940000155168.a.b	ENSGT00940000156809.b	ENSGT00940000156196	ENSGT00940000157921	ENSGT00390000006540	ENSGT00940000157768	ENSGT00940000157780
Chinese hamster chok1gshd	MODERN SPECIES	76	Grid1 (ENSCGRG00001015468) #10	Ccser2 (ENSCGRG00001023404) #11	Rgr (ENSCGRG00001019503) #12	Lrit1 (ENSCGRG00001019167) #13	Lrit2 (ENSCGRG00001017784)	ENSCGRG00001016916	Cdhr1 (ENSCGRG00001012932) #14	Gpr15lg (ENSCGRG00001000757)	Ghitm (ENSCGRG00001023033) #15	Nrg3 (ENSCGRG00001024148) #16	Sh2d4b (ENSCGRG00001015755) #17	Tspan14 (ENSCGRG00001013610) #18	Prxl2a (ENSCGRG00001006989) #19	Dydc2 (ENSCGRG00001005256) #20	Dydc1 (ENSCGRG00001000992) #21	Mat1a (ENSCGRG00001018656) #22	Sftpa1 (ENSCGRG00001017978) #23	Mbl1 (ENSCGRG00001017391) #24	Sftpd (ENSCGRG00001016517) #25	ENSCGRG00001014762	ENSCGRG00001012384	Ube2e2 (ENSCGRG00001007796)	Ube2e1 (ENSCGRG00001002657)	Nkiras1 (ENSCGRG00001001506)	Rpl15 (ENSCGRG00001021972)	Nr1d2 (ENSCGRG00001007315)	Thrb (ENSCGRG00001007517)	Rarb (ENSCGRG00001000228)	Top2b (ENSCGRG00001020296)	Ngly1 (ENSCGRG00001015315)	Oxsm (ENSCGRG00001010895)
Golden Hamster	MODERN SPECIES	725										Nrg3 (ENSMAUG00000011497) #16	ENSMAUG00000001819 #17	Tspan14 (ENSMAUG00000015066) #18	Prxl2a (ENSMAUG00000019951) #19	Dydc2 (ENSMAUG00000021745) #20	Dydc1 (ENSMAUG00000004246) #21	Mat1a (ENSMAUG00000005630) #22	Sftpa1 (ENSMAUG00000012489) #23	Mbl1 (ENSMAUG00000014755) #24	Sftpd (ENSMAUG00000008377) #25	ENSMAUG00000012877	ENSMAUG00000012393	Ube2e2 (ENSMAUG00000015091)	Ube2e1 (ENSMAUG00000015316)	Nkiras1 (ENSMAUG00000007906)	Thrb (ENSMAUG00000008673)	Rarb (ENSMAUG00000000652)	Top2b (ENSMAUG00000018711)	Ngly1 (ENSMAUG00000021151)	Oxsm (ENSMAUG00000008599)
Cricetidae_B	ANCESTRAL SPECIES	42	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00940000160242	ENSGT00940000155985	ENSGT00940000156415	ENSGT00940000159705	ENSGT00910000144184.q.a.h	ENSGT00940000155168.a.b	ENSGT00940000156809.b	ENSGT00940000156196	ENSGT00940000157921	ENSGT00390000006540	ENSGT00940000157768	ENSGT00940000157780
Prairie vole	MODERN SPECIES	14	Wapl (ENSMOCG00000011054) #9	Grid1 (ENSMOCG00000020229) #10	ENSMOCG00000017539 #11	Rgr (ENSMOCG00000014391) #12	Lrit1 (ENSMOCG00000013485) #13	Lrit2 (ENSMOCG00000023010)	Cdhr1 (ENSMOCG00000014840) #14	Gpr15lg (ENSMOCG00000022126)	Ghitm (ENSMOCG00000018145) #15	Nrg3 (ENSMOCG00000009105) #16	Sh2d4b (ENSMOCG00000014832) #17	Tspan14 (ENSMOCG00000009804) #18	Prxl2a (ENSMOCG00000003643) #19	Dydc2 (ENSMOCG00000011087) #20	Dydc1 (ENSMOCG00000008679) #21	Mat1a (ENSMOCG00000022118) #22	Sftpa1 (ENSMOCG00000015086) #23	Mbl1 (ENSMOCG00000007278) #24	Sftpd (ENSMOCG00000022358) #25	ENSMOCG00000005726	ENSMOCG00000003023	Ube2e2 (ENSMOCG00000018312)	Ube2e1 (ENSMOCG00000010086)	Nkiras1 (ENSMOCG00000012003)	Rpl15 (ENSMOCG00000009270)	ENSMOCG00000018417	ENSMOCG00000016625	Thrb (ENSMOCG00000013115)	Rarb (ENSMOCG00000005835)	Top2b (ENSMOCG00000002765)	Ngly1 (ENSMOCG00000022189)
Northern American deer mouse	MODERN SPECIES	22	Grid1 (ENSPEMG00000018243) #10	Ccser2 (ENSPEMG00000028286) #11	Rgr (ENSPEMG00000011697) #12	Lrit1 (ENSPEMG00000010398) #13	Lrit2 (ENSPEMG00000013429)	Cdhr1 (ENSPEMG00000012705) #14	Gpr15lg (ENSPEMG00000031307)	Ghitm (ENSPEMG00000011507) #15	ENSPEMG00000028531	Nrg3 (ENSPEMG00000015743) #16	Sh2d4b (ENSPEMG00000013526) #17	Tspan14 (ENSPEMG00000011034) #18	Prxl2a (ENSPEMG00000003661) #19	Dydc2 (ENSPEMG00000028439) #20	Dydc1 (ENSPEMG00000013569) #21	Mat1a (ENSPEMG00000008918) #22	Sftpa1 (ENSPEMG00000027926) #23	Mbl1 (ENSPEMG00000017415) #24	Sftpd (ENSPEMG00000010320) #25	ENSPEMG00000012583	ENSPEMG00000029653	ENSPEMG00000029844	ENSPEMG00000026001	ENSPEMG00000030952	Ube2e2 (ENSPEMG00000018980)	Ube2e1 (ENSPEMG00000016554)	Nkiras1 (ENSPEMG00000015836)	Rpl15 (ENSPEMG00000015540)	Nr1d2 (ENSPEMG00000014504)	Thrb (ENSPEMG00000013006)	ENSPEMG00000026685
Upper Galilee mountains blind mole rat	MODERN SPECIES	1504											Sh2d4b (ENSNGAG00000013815) #17	Tspan14 (ENSNGAG00000014144) #18	Prxl2a (ENSNGAG00000014978) #19	Dydc2 (ENSNGAG00000015558) #20	Dydc1 (ENSNGAG00000016125) #21	Mat1a (ENSNGAG00000020715) #22	Sftpa1 (ENSNGAG00000021105) #23	Mbl1 (ENSNGAG00000021485) #24	Sftpd (ENSNGAG00000000804) #25	Polr3a (ENSNGAG00000015863) #34	Rps24 (ENSNGAG00000016361) ##33	ENSNGAG00000002316	Zmiz1 (ENSNGAG00000014318) #32	Ppif (ENSNGAG00000010430) #31	Zcchc24 (ENSNGAG00000015277) #30	Anxa11 (ENSNGAG00000016721) #29	ENSNGAG00000020773 #28	Tmem254 (ENSNGAG00000003387) #27	Duxbl1 (ENSNGAG00000007173) #26	ENSNGAG00000012930 #36	Kcnma1 (ENSNGAG00000013295) #37
Kangaroo rat	MODERN SPECIES	467	ENSDORG00000024513 #9	Grid1 (ENSDORG00000012308) #10	ENSDORG00000008217 #11	Rgr (ENSDORG00000001123) #12	Lrit1 (ENSDORG00000001121) #13	Lrit2 (ENSDORG00000001120)	Cdhr1 (ENSDORG00000001114) #14	Gpr15lg (ENSDORG00000001112)	ENSDORG00000001109 #15	Nrg3 (ENSDORG00000028000) #16	Sh2d4b (ENSDORG00000008406) #17	Tspan14 (ENSDORG00000008405) #18	Prxl2a (ENSDORG00000015928) #19	ENSDORG00000006657 #20	Dydc1 (ENSDORG00000006656) #21	Mat1a (ENSDORG00000006939) #22	Sftpa1 (ENSDORG00000006938) #23	Mbl1 (ENSDORG00000006997) #24	Sftpd (ENSDORG00000006993) #25
Rodentia_A	ANCESTRAL SPECIES	15	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00520000058758	ENSGT00390000016042 #27	ENSGT00390000017848	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a
Hystricomorpha	ANCESTRAL SPECIES	56	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Hystricomorpha_a	ANCESTRAL SPECIES	62	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT01030000237896	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Guinea pig	MODERN SPECIES	62	WAPL (ENSCPOG00000012961) #9	GRID1 (ENSCPOG00000010412) #10	CCSER2 (ENSCPOG00000003617) #11	RGR (ENSCPOG00000022556) #12	LRIT1 (ENSCPOG00000015393) #13	LRIT2 (ENSCPOG00000015390)	CDHR1 (ENSCPOG00000005235) #14	ENSCPOG00000034121	GHITM (ENSCPOG00000006432) #15	NRG3 (ENSCPOG00000012186) #16	SH2D4B (ENSCPOG00000003471) #17	TSPAN14 (ENSCPOG00000009896) #18	PRXL2A (ENSCPOG00000006552) #19	DYDC2 (ENSCPOG00000035691) #20	DYDC1 (ENSCPOG00000006995) #21	MAT1A (ENSCPOG00000013447) #22	ENSCPOG00000032092 #23	ENSCPOG00000027540 #24	SFTPD (ENSCPOG00000007463) #25
Hystricomorpha_b	ANCESTRAL SPECIES	87	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT01030000237896	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Long-tailed chinchilla	MODERN SPECIES	217	WAPL (ENSCLAG00000000189) #9	GRID1 (ENSCLAG00000000120) #10	CCSER2 (ENSCLAG00000000521) #11	RGR (ENSCLAG00000000310) #12	LRIT1 (ENSCLAG00000000263) #13	LRIT2 (ENSCLAG00000000247)	CDHR1 (ENSCLAG00000000482) #14	ENSCLAG00000000449	GHITM (ENSCLAG00000000416) #15	NRG3 (ENSCLAG00000001117) #16	SH2D4B (ENSCLAG00000000290) #17	TSPAN14 (ENSCLAG00000000279) #18	PRXL2A (ENSCLAG00000000254) #19	DYDC2 (ENSCLAG00000000143) #20	DYDC1 (ENSCLAG00000000126) #21	MAT1A (ENSCLAG00000000085) #22	ENSCLAG00000000065 #23	ENSCLAG00000000944 #24	SFTPD (ENSCLAG00000000893) #25
Degu	MODERN SPECIES	173	CCSER2 (ENSODEG00000010793) #11	RGR (ENSODEG00000011393) #12	LRIT1 (ENSODEG00000012611) #13	LRIT2 (ENSODEG00000011609)	CDHR1 (ENSODEG00000010766) #14	ENSODEG00000012481	ENSODEG00000011340 #15	ENSODEG00000012959	NRG3 (ENSODEG00000011562) #16	SH2D4B (ENSODEG00000013141) #17	TSPAN14 (ENSODEG00000010478) #18	PRXL2A (ENSODEG00000012446) #19	ENSODEG00000019887	DYDC2 (ENSODEG00000010966) #20	DYDC1 (ENSODEG00000010939) #21	MAT1A (ENSODEG00000011227) #22	ENSODEG00000011120 #23	ENSODEG00000011470 #24	ENSODEG00000010292 #25
Naked mole-rat female	MODERN SPECIES	7	LRIT2 (ENSHGLG00000012056)	CDHR1 (ENSHGLG00000012222) #14	GPR15LG (ENSHGLG00000050798)	ENSHGLG00000004941 #15	ENSHGLG00000042835	ENSHGLG00000033515	ENSHGLG00000041944	ENSHGLG00000006241 #16	SH2D4B (ENSHGLG00000007947) #17	TSPAN14 (ENSHGLG00000008596) #18	PRXL2A (ENSHGLG00000008942) #19	ENSHGLG00000048071	ENSHGLG00000048270	ENSHGLG00000005445 #20	DYDC1 (ENSHGLG00000005866) #21	ENSHGLG00000007667 #22	ENSHGLG00000009001	ENSHGLG00000010093 #23	ENSHGLG00000036564 #24	ENSHGLG00000032865	ENSHGLG00000008417 #25	ENSHGLG00000008456	ENSHGLG00000037791 #26	ENSHGLG00000020952	ENSHGLG00000045248	ENSHGLG00000034451	ENSHGLG00000034932	ENSHGLG00000025275	ENSHGLG00000045404	ENSHGLG00000019982	ENSHGLG00000002153
Sciuridae	ANCESTRAL SPECIES	30	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091 #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25	ENSGT00390000016042 #27	ENSGT00390000017848	ENSGT00940000156914 #29	ENSGT00390000008264 #30	ENSGT00940000156008 #31	ENSGT01030000234539.b.b.b #32	ENSGT00390000000153.l.a ##33	ENSGT00930000151028 #34	ENSGT00940000155303 #36	ENSGT00940000154935 #37	ENSGT00940000153289.a.a.a	ENSGT00390000014618.a
Eurasian red squirrel	MODERN SPECIES	13	ENSSVLG00005003751	CCSER2 (ENSSVLG00005003778) #11	RGR (ENSSVLG00005003817) #12	LRIT1 (ENSSVLG00005003867) #13	LRIT2 (ENSSVLG00005003885)	CDHR1 (ENSSVLG00005003916) #14	GPR15LG (ENSSVLG00005003966)	GHITM (ENSSVLG00005003987) #15	NRG3 (ENSSVLG00005004056) #16	ENSSVLG00005004095	SH2D4B (ENSSVLG00005004103) #17	TSPAN14 (ENSSVLG00005004151) #18	PRXL2A (ENSSVLG00005004219) #19	DYDC2 (ENSSVLG00005004236) #20	DYDC1 (ENSSVLG00005004260) #21	MAT1A (ENSSVLG00005004294) #22	ENSSVLG00005004335 #23	ENSSVLG00005004372 #24	SFTPD (ENSSVLG00005004412) #25	ENSSVLG00005004436	ENSSVLG00005006012	ENSSVLG00005006036	ENSSVLG00005006056	ENSSVLG00005006085	ENSSVLG00005006106	ENSSVLG00005006135	ENSSVLG00005006190	TMEM254 (ENSSVLG00005006215) #27	PLAC9 (ENSSVLG00005006256)	ANXA11 (ENSSVLG00005006301) #29	ENSSVLG00005006337
Marmotini	ANCESTRAL SPECIES	16	ENSGT00390000015768 #9	ENSGT00940000155910 #10	ENSGT00940000153912.A #11	ENSGT01090000260051.b.a.a.b.b #12	ENSGT00940000156033 #13	ENSGT00940000159143	ENSGT00940000155509 #14	ENSGT00390000015172	ENSGT01050000244940.a.b #15	ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091.a #20	ENSGT00940000161631 #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Marmotini_b	ANCESTRAL SPECIES	249										ENSGT00940000156754.a.b #16	ENSGT00940000159732 #17	ENSGT00940000159235 #18	ENSGT00940000161199 #19	ENSGT00940000162091.a #20	ENSGT00940000161631.g #21	ENSGT00950000183185.c.a.b #22	ENSGT00940000156653 #23	ENSGT00940000154368.k #24	ENSGT00940000155748.b #25
Arctic ground squirrel	MODERN SPECIES	339											SH2D4B (ENSUPAG00010002361) #17	TSPAN14 (ENSUPAG00010002338) #18	PRXL2A (ENSUPAG00010002323) #19	ENSUPAG00010002313 #20	ENSUPAG00010002305 #21	MAT1A (ENSUPAG00010002295) #22	ENSUPAG00010002288 #23	ENSUPAG00010002281 #24	SFTPD (ENSUPAG00010002275) #25	ENSUPAG00010002270
Squirrel	MODERN SPECIES	316										ENSSTOG00000022933 #16	SH2D4B (ENSSTOG00000003332) #17	TSPAN14 (ENSSTOG00000012873) #18	PRXL2A (ENSSTOG00000012864) #19	DYDC2 (ENSSTOG00000012860) #20	DYDC1 (ENSSTOG00000012858) #21	MAT1A (ENSSTOG00000007082) #22	ENSSTOG00000030982 #23	ENSSTOG00000022645 #24	SFTPD (ENSSTOG00000020181) #25
Alpin marmot	MODERN SPECIES	66	WAPL (ENSMMMG00000011412) #9	GRID1 (ENSMMMG00000011366) #10	CCSER2 (ENSMMMG00000011155) #11	RGR (ENSMMMG00000011130) #12	LRIT1 (ENSMMMG00000011121) #13	LRIT2 (ENSMMMG00000011116)	CDHR1 (ENSMMMG00000011089) #14	GPR15LG (ENSMMMG00000011077)	GHITM (ENSMMMG00000011060) #15	NRG3 (ENSMMMG00000010985) #16	SH2D4B (ENSMMMG00000010944) #17	TSPAN14 (ENSMMMG00000010918) #18	PRXL2A (ENSMMMG00000010895) #19	ENSMMMG00000010884 #20	DYDC1 (ENSMMMG00000010873) #21	MAT1A (ENSMMMG00000010849) #22	ENSMMMG00000010829 #23	ENSMMMG00000010822 #24	SFTPD (ENSMMMG00000010810) #25	ENSMMMG00000010806
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00950000183185.c.a.b #22
Pika	MODERN SPECIES	2177											SH2D4B (ENSOPRG00000003990) #17	TSPAN14 (ENSOPRG00000003969) #18	PRXL2A (ENSOPRG00000003958) #19	DYDC2 (ENSOPRG00000003938) #20	ENSOPRG00000018784	MAT1A (ENSOPRG00000003913) #22	HHEX (ENSOPRG00000003896)