Euarchontoglires_A ANCESTRAL SPECIES 15 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000154537 ENSGT00390000016042 ENSGT00390000017848 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a Glires ANCESTRAL SPECIES 16 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000165487 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00390000004409 Lagomorpha ANCESTRAL SPECIES ENSGT00950000183185.c.a.b #22 Pika MODERN SPECIES 2177 SH2D4B (ENSOPRG00000003990) #17 TSPAN14 (ENSOPRG00000003969) #18 PRXL2A (ENSOPRG00000003958) #19 DYDC2 (ENSOPRG00000003938) #20 ENSOPRG00000018784 #21 MAT1A (ENSOPRG00000003913) #22 HHEX (ENSOPRG00000003896) #23 Rodentia ANCESTRAL SPECIES 16 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000165487 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00390000004409 Rodentia_B ANCESTRAL SPECIES 10 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000165487 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00390000004409 Myomorpha ANCESTRAL SPECIES 15 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000165487 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a ENSGT00390000004409 Muroidea ANCESTRAL SPECIES 62 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Muroidea_A ANCESTRAL SPECIES 10 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Murinae ANCESTRAL SPECIES 26 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Mus ANCESTRAL SPECIES 8 ENSGT00940000153181.z.g.b.a ENSGT00940000153181.z.g.b.b ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT01050000244902.b.c.b ENSGT01050000244902.b.c.a ENSGT00390000006080 ENSGT00940000153986.a ENSGT00390000007753.b ENSGT01020000230346.A ENSGT00940000154859 ENSGT00390000008666 ENSGT00390000013444.a.a ENSGT00940000156065 ENSGT00860000135823 ENSGT00940000159502 Mus_A ANCESTRAL SPECIES 12 ENSGT00940000153181.z.g.b.a ENSGT00940000153181.z.g.b.b ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT01050000244902.b.c.b ENSGT01050000244902.b.c.a ENSGT00390000006080 ENSGT00940000153986.a ENSGT00390000007753.b ENSGT01020000230346.A ENSGT00940000154859 ENSGT00390000008666 ENSGT00390000013444.a.a ENSGT00940000156065 ENSGT00860000135823 ENSGT00940000159502 Mus_B ANCESTRAL SPECIES 11 ENSGT00940000153181.z.g.b.a ENSGT00940000153181.z.g.b.b ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT01050000244902.b.c.b ENSGT01050000244902.b.c.a ENSGT00390000006080 ENSGT00940000153986.a ENSGT00390000007753.b ENSGT01020000230346.A ENSGT00940000154859 ENSGT00390000008666 ENSGT00390000013444.a.a ENSGT00940000156065 ENSGT00860000135823 ENSGT00940000159502 Mus_C ANCESTRAL SPECIES 26 ENSGT00940000155910 ENSGT00940000153181.z.g.b.a ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT01050000244902.b.c.a ENSGT00390000006080 ENSGT00940000153986.a ENSGT00390000007753.b ENSGT01020000230346.A ENSGT00940000154859 ENSGT00390000008666 ENSGT00390000013444.a.a ENSGT00940000156065 ENSGT00860000135823 ENSGT00940000159502 ENSGT00390000004717 spretus MODERN SPECIES 5 4930596D02Rik (MGP_SPRETEiJ_G0020013) 4930474N05Rik (MGP_SPRETEiJ_G0020014) Ccser2 (MGP_SPRETEiJ_G0020015) Rgr (MGP_SPRETEiJ_G0020016) Lrit1 (MGP_SPRETEiJ_G0020017) Lrit2 (MGP_SPRETEiJ_G0020018) Cdhr1 (MGP_SPRETEiJ_G0020019) Gpr15lg (MGP_SPRETEiJ_G0020020) Ghitm (MGP_SPRETEiJ_G0020021) Nrg3 (MGP_SPRETEiJ_G0020022) Sh2d4b (MGP_SPRETEiJ_G0020023) #17 Tspan14 (MGP_SPRETEiJ_G0020024) #18 Prxl2a (MGP_SPRETEiJ_G0020025) #19 Dydc2 (MGP_SPRETEiJ_G0020026) #20 Dydc1 (MGP_SPRETEiJ_G0020027) Mat1a (MGP_SPRETEiJ_G0020028) #22 Sftpa1 (MGP_SPRETEiJ_G0020029) Mbl1 (MGP_SPRETEiJ_G0020030) Sftpd (MGP_SPRETEiJ_G0020031) Ptger2 (MGP_SPRETEiJ_G0020032) Txndc16 (MGP_SPRETEiJ_G0020033) Gpr137c (MGP_SPRETEiJ_G0020034) Ero1a (MGP_SPRETEiJ_G0020035) Psmc6 (MGP_SPRETEiJ_G0020036) MGP_SPRETEiJ_G0020037 MGP_SPRETEiJ_G0020038 MGP_SPRETEiJ_G0020039 Gnpnat1 (MGP_SPRETEiJ_G0020040) MGP_SPRETEiJ_G0020041 Ddhd1 (MGP_SPRETEiJ_G0020042) MGP_SPRETEiJ_G0020043 Steppe mouse MODERN SPECIES 3252 ENSMSIG00000025657 Nrg3 (ENSMSIG00000025571) ENSMSIG00000025550 Sh2d4b (ENSMSIG00000025469) #17 Tspan14 (ENSMSIG00000025446) #18 Prxl2a (ENSMSIG00000025436) #19 Dydc2 (ENSMSIG00000025426) #20 Dydc1 (ENSMSIG00000025391) Mat1a (ENSMSIG00000025378) #22 Sftpa1 (ENSMSIG00000025366) Mbl1 (ENSMSIG00000025362) Sftpd (ENSMSIG00000025333) Mouse MODERN SPECIES 5 4930596D02Rik (ENSMUSG00000041068) 4930474N05Rik (ENSMUSG00000096405) Ccser2 (ENSMUSG00000058690) Rgr (ENSMUSG00000021804) Lrit1 (ENSMUSG00000041044) Lrit2 (ENSMUSG00000043418) Cdhr1 (ENSMUSG00000021803) Gpr15lg (ENSMUSG00000096001) Ghitm (ENSMUSG00000041028) Nrg3 (ENSMUSG00000041014) Sh2d4b (ENSMUSG00000037833) #17 Tspan14 (ENSMUSG00000037824) #18 Prxl2a (ENSMUSG00000021792) #19 Dydc2 (ENSMUSG00000021791) #20 Dydc1 (ENSMUSG00000021790) Mat1a (ENSMUSG00000037798) #22 Sftpa1 (ENSMUSG00000021789) Mbl1 (ENSMUSG00000037780) Sftpd (ENSMUSG00000021795) Gm2832 (ENSMUSG00000091110) Gm5798 (ENSMUSG00000094925) Gm3486 (ENSMUSG00000090505) 1700049E17Rik2 (ENSMUSG00000090440) Gm3676 (ENSMUSG00000079269) Gm47189 (ENSMUSG00000114852) 1700049E17Rik1 (ENSMUSG00000079271) 1700024B05Rik (ENSMUSG00000052334) Gm3543 (ENSMUSG00000093945) Gm3573 (ENSMUSG00000091792) Gm17026 (ENSMUSG00000092152) Gm7995 (ENSMUSG00000094157) Ryukyu mouse MODERN SPECIES 5 Lrit2 (MGP_CAROLIEiJ_G0019132) Cdhr1 (MGP_CAROLIEiJ_G0019133) Gpr15lg (MGP_CAROLIEiJ_G0019134) Ghitm (MGP_CAROLIEiJ_G0019135) Nrg3 (MGP_CAROLIEiJ_G0019136) MGP_CAROLIEiJ_G0002209 MGP_CAROLIEiJ_G0002210 MGP_CAROLIEiJ_G0002211 MGP_CAROLIEiJ_G0002212 MGP_CAROLIEiJ_G0002213 Sh2d4b (MGP_CAROLIEiJ_G0019137) #17 Tspan14 (MGP_CAROLIEiJ_G0019138) #18 Prxl2a (MGP_CAROLIEiJ_G0019139) #19 Dydc2 (MGP_CAROLIEiJ_G0019140) #20 Dydc1 (MGP_CAROLIEiJ_G0019141) Mat1a (MGP_CAROLIEiJ_G0019142) #22 Sftpa1 (MGP_CAROLIEiJ_G0019143) Mbl1 (MGP_CAROLIEiJ_G0019144) Sftpd (MGP_CAROLIEiJ_G0019145) Ptger2 (MGP_CAROLIEiJ_G0019146) Txndc16 (MGP_CAROLIEiJ_G0019147) Gpr137c (MGP_CAROLIEiJ_G0019148) Ero1a (MGP_CAROLIEiJ_G0019149) Psmc6 (MGP_CAROLIEiJ_G0019150) MGP_CAROLIEiJ_G0019151 Gnpnat1 (MGP_CAROLIEiJ_G0019152) Fermt2 (MGP_CAROLIEiJ_G0019153) Ddhd1 (MGP_CAROLIEiJ_G0019154) MGP_CAROLIEiJ_G0019155 Bmp4 (MGP_CAROLIEiJ_G0019156) Cdkn3 (MGP_CAROLIEiJ_G0019157) Shrew mouse MODERN SPECIES 21 Grid1 (MGP_PahariEiJ_G0030143) 4930596D02Rik (MGP_PahariEiJ_G0030144) Ccser2 (MGP_PahariEiJ_G0030145) Rgr (MGP_PahariEiJ_G0030146) Lrit1 (MGP_PahariEiJ_G0030147) Lrit2 (MGP_PahariEiJ_G0030148) Cdhr1 (MGP_PahariEiJ_G0030149) Gpr15lg (MGP_PahariEiJ_G0030150) Ghitm (MGP_PahariEiJ_G0030151) Nrg3 (MGP_PahariEiJ_G0030152) Sh2d4b (MGP_PahariEiJ_G0030153) #17 Tspan14 (MGP_PahariEiJ_G0030154) #18 Prxl2a (MGP_PahariEiJ_G0030155) #19 Dydc2 (MGP_PahariEiJ_G0030156) #20 Dydc1 (MGP_PahariEiJ_G0030157) Mat1a (MGP_PahariEiJ_G0030158) #22 Sftpa1 (MGP_PahariEiJ_G0030159) Mbl1 (MGP_PahariEiJ_G0030160) Sftpd (MGP_PahariEiJ_G0030161) Ptgdr (MGP_PahariEiJ_G0030162) Ptger2 (MGP_PahariEiJ_G0030163) Txndc16 (MGP_PahariEiJ_G0030164) Gpr137c (MGP_PahariEiJ_G0030165) Ero1a (MGP_PahariEiJ_G0030166) Psmc6 (MGP_PahariEiJ_G0030167) MGP_PahariEiJ_G0030168 Gnpnat1 (MGP_PahariEiJ_G0030169) Fermt2 (MGP_PahariEiJ_G0030170) Ddhd1 (MGP_PahariEiJ_G0030171) MGP_PahariEiJ_G0030172 Bmp4 (MGP_PahariEiJ_G0030173) Rat MODERN SPECIES 7 LOC120097423 (ENSRNOG00000065891) LOC120097531 (ENSRNOG00000065076) Eloa2l (ENSRNOG00000066342) Eloa-ps3 (ENSRNOG00000067867) Eloa-ps1 (ENSRNOG00000067535) EloaA2l1 (ENSRNOG00000063161) Nrg3 (ENSRNOG00000063450) RGD1564958 (ENSRNOG00000028958) ENSRNOG00000065936 LOC100363321 (ENSRNOG00000062821) Sh2d4b (ENSRNOG00000042623) #17 Tspan14 (ENSRNOG00000010813) #18 Prxl2a (ENSRNOG00000011140) #19 Dydc2 (ENSRNOG00000039591) #20 Dydc1 (ENSRNOG00000011165) Mat1a (ENSRNOG00000011351) #22 Sftpa1 (ENSRNOG00000011438) Mbl1 (ENSRNOG00000011706) Sftpd (ENSRNOG00000056001) F2rl3 (ENSRNOG00000068093) Sin3b (ENSRNOG00000048622) Nwd1 (ENSRNOG00000052129) Tmem38a (ENSRNOG00000011912) Smim7 (ENSRNOG00000042037) Med26 (ENSRNOG00000012270) Slc35e1 (ENSRNOG00000012287) Cherp (ENSRNOG00000012323) C16h19orf44 (ENSRNOG00000023700) Calr3 (ENSRNOG00000013260) Eps15l1 (ENSRNOG00000013502) Klf2 (ENSRNOG00000067705) Cricetidae ANCESTRAL SPECIES 31 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000160242 ENSGT00940000155985 ENSGT00940000156415 ENSGT00940000159705 ENSGT00910000144184.q.a.h ENSGT00940000155168.a.b ENSGT00940000156809.b ENSGT00940000156196 ENSGT00940000157921 ENSGT00390000006540 ENSGT00940000157768 ENSGT00940000157780 Cricetinae ANCESTRAL SPECIES 9 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000160242 ENSGT00940000155985 ENSGT00940000156415 ENSGT00940000159705 ENSGT00910000144184.q.a.h ENSGT00940000155168.a.b ENSGT00940000156809.b ENSGT00940000156196 ENSGT00940000157921 ENSGT00390000006540 ENSGT00940000157768 ENSGT00940000157780 Chinese hamster chok1gshd MODERN SPECIES 76 Grid1 (ENSCGRG00001015468) Ccser2 (ENSCGRG00001023404) Rgr (ENSCGRG00001019503) Lrit1 (ENSCGRG00001019167) Lrit2 (ENSCGRG00001017784) ENSCGRG00001016916 Cdhr1 (ENSCGRG00001012932) Gpr15lg (ENSCGRG00001000757) Ghitm (ENSCGRG00001023033) Nrg3 (ENSCGRG00001024148) Sh2d4b (ENSCGRG00001015755) #17 Tspan14 (ENSCGRG00001013610) #18 Prxl2a (ENSCGRG00001006989) #19 Dydc2 (ENSCGRG00001005256) #20 Dydc1 (ENSCGRG00001000992) Mat1a (ENSCGRG00001018656) #22 Sftpa1 (ENSCGRG00001017978) Mbl1 (ENSCGRG00001017391) Sftpd (ENSCGRG00001016517) ENSCGRG00001014762 ENSCGRG00001012384 Ube2e2 (ENSCGRG00001007796) Ube2e1 (ENSCGRG00001002657) Nkiras1 (ENSCGRG00001001506) Rpl15 (ENSCGRG00001021972) Nr1d2 (ENSCGRG00001007315) Thrb (ENSCGRG00001007517) Rarb (ENSCGRG00001000228) Top2b (ENSCGRG00001020296) Ngly1 (ENSCGRG00001015315) Oxsm (ENSCGRG00001010895) Golden Hamster MODERN SPECIES 725 Nrg3 (ENSMAUG00000011497) ENSMAUG00000001819 #17 Tspan14 (ENSMAUG00000015066) #18 Prxl2a (ENSMAUG00000019951) #19 Dydc2 (ENSMAUG00000021745) #20 Dydc1 (ENSMAUG00000004246) Mat1a (ENSMAUG00000005630) #22 Sftpa1 (ENSMAUG00000012489) Mbl1 (ENSMAUG00000014755) Sftpd (ENSMAUG00000008377) ENSMAUG00000012877 ENSMAUG00000012393 Ube2e2 (ENSMAUG00000015091) Ube2e1 (ENSMAUG00000015316) Nkiras1 (ENSMAUG00000007906) Thrb (ENSMAUG00000008673) Rarb (ENSMAUG00000000652) Top2b (ENSMAUG00000018711) Ngly1 (ENSMAUG00000021151) Oxsm (ENSMAUG00000008599) Cricetidae_B ANCESTRAL SPECIES 42 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00940000160242 ENSGT00940000155985 ENSGT00940000156415 ENSGT00940000159705 ENSGT00910000144184.q.a.h ENSGT00940000155168.a.b ENSGT00940000156809.b ENSGT00940000156196 ENSGT00940000157921 ENSGT00390000006540 ENSGT00940000157768 ENSGT00940000157780 Prairie vole MODERN SPECIES 14 Wapl (ENSMOCG00000011054) Grid1 (ENSMOCG00000020229) ENSMOCG00000017539 Rgr (ENSMOCG00000014391) Lrit1 (ENSMOCG00000013485) Lrit2 (ENSMOCG00000023010) Cdhr1 (ENSMOCG00000014840) Gpr15lg (ENSMOCG00000022126) Ghitm (ENSMOCG00000018145) Nrg3 (ENSMOCG00000009105) Sh2d4b (ENSMOCG00000014832) #17 Tspan14 (ENSMOCG00000009804) #18 Prxl2a (ENSMOCG00000003643) #19 Dydc2 (ENSMOCG00000011087) #20 Dydc1 (ENSMOCG00000008679) Mat1a (ENSMOCG00000022118) #22 Sftpa1 (ENSMOCG00000015086) Mbl1 (ENSMOCG00000007278) Sftpd (ENSMOCG00000022358) ENSMOCG00000005726 ENSMOCG00000003023 Ube2e2 (ENSMOCG00000018312) Ube2e1 (ENSMOCG00000010086) Nkiras1 (ENSMOCG00000012003) Rpl15 (ENSMOCG00000009270) ENSMOCG00000018417 ENSMOCG00000016625 Thrb (ENSMOCG00000013115) Rarb (ENSMOCG00000005835) Top2b (ENSMOCG00000002765) Ngly1 (ENSMOCG00000022189) Northern American deer mouse MODERN SPECIES 22 Grid1 (ENSPEMG00000018243) Ccser2 (ENSPEMG00000028286) Rgr (ENSPEMG00000011697) Lrit1 (ENSPEMG00000010398) Lrit2 (ENSPEMG00000013429) Cdhr1 (ENSPEMG00000012705) Gpr15lg (ENSPEMG00000031307) Ghitm (ENSPEMG00000011507) ENSPEMG00000028531 Nrg3 (ENSPEMG00000015743) Sh2d4b (ENSPEMG00000013526) #17 Tspan14 (ENSPEMG00000011034) #18 Prxl2a (ENSPEMG00000003661) #19 Dydc2 (ENSPEMG00000028439) #20 Dydc1 (ENSPEMG00000013569) Mat1a (ENSPEMG00000008918) #22 Sftpa1 (ENSPEMG00000027926) Mbl1 (ENSPEMG00000017415) Sftpd (ENSPEMG00000010320) ENSPEMG00000012583 ENSPEMG00000029653 ENSPEMG00000029844 ENSPEMG00000026001 ENSPEMG00000030952 Ube2e2 (ENSPEMG00000018980) Ube2e1 (ENSPEMG00000016554) Nkiras1 (ENSPEMG00000015836) Rpl15 (ENSPEMG00000015540) Nr1d2 (ENSPEMG00000014504) Thrb (ENSPEMG00000013006) ENSPEMG00000026685 Upper Galilee mountains blind mole rat MODERN SPECIES 1504 Sh2d4b (ENSNGAG00000013815) #17 Tspan14 (ENSNGAG00000014144) #18 Prxl2a (ENSNGAG00000014978) #19 Dydc2 (ENSNGAG00000015558) #20 Dydc1 (ENSNGAG00000016125) Mat1a (ENSNGAG00000020715) #22 Sftpa1 (ENSNGAG00000021105) Mbl1 (ENSNGAG00000021485) Sftpd (ENSNGAG00000000804) Polr3a (ENSNGAG00000015863) Rps24 (ENSNGAG00000016361) ENSNGAG00000002316 Zmiz1 (ENSNGAG00000014318) Ppif (ENSNGAG00000010430) Zcchc24 (ENSNGAG00000015277) Anxa11 (ENSNGAG00000016721) ENSNGAG00000020773 Tmem254 (ENSNGAG00000003387) Duxbl1 (ENSNGAG00000007173) ENSNGAG00000012930 Kcnma1 (ENSNGAG00000013295) Lesser Egyptian jerboa MODERN SPECIES 64 Bmpr1a (ENSJJAG00000021938) Ldb3 (ENSJJAG00000018553) Wapl (ENSJJAG00000000624) ENSJJAG00000017435 Ccser2 (ENSJJAG00000010060) Rgr (ENSJJAG00000019791) Lrit1 (ENSJJAG00000010600) Cdhr1 (ENSJJAG00000019113) ENSJJAG00000016988 Nrg3 (ENSJJAG00000010166) Sh2d4b (ENSJJAG00000001387) #17 Tspan14 (ENSJJAG00000023639) #18 Prxl2a (ENSJJAG00000021962) #19 Dydc2 (ENSJJAG00000010678) #20 Dydc1 (ENSJJAG00000017106) Mat1a (ENSJJAG00000022624) #22 Sftpa1 (ENSJJAG00000018997) Mbl1 (ENSJJAG00000015405) Sftpd (ENSJJAG00000023114) Duxbl1 (ENSJJAG00000021637) Tmem254 (ENSJJAG00000024320) ENSJJAG00000013392 Anxa11 (ENSJJAG00000016249) Zcchc24 (ENSJJAG00000010391) Ppif (ENSJJAG00000011851) Zmiz1 (ENSJJAG00000016307) ENSJJAG00000007712 ENSJJAG00000016217 ENSJJAG00000006291 ENSJJAG00000019119 Kcnma1 (ENSJJAG00000015287) Kangaroo rat MODERN SPECIES 467 ENSDORG00000024513 Grid1 (ENSDORG00000012308) ENSDORG00000008217 Rgr (ENSDORG00000001123) Lrit1 (ENSDORG00000001121) Lrit2 (ENSDORG00000001120) Cdhr1 (ENSDORG00000001114) Gpr15lg (ENSDORG00000001112) ENSDORG00000001109 Nrg3 (ENSDORG00000028000) Sh2d4b (ENSDORG00000008406) #17 Tspan14 (ENSDORG00000008405) #18 Prxl2a (ENSDORG00000015928) #19 ENSDORG00000006657 #20 Dydc1 (ENSDORG00000006656) Mat1a (ENSDORG00000006939) #22 Sftpa1 (ENSDORG00000006938) Mbl1 (ENSDORG00000006997) Sftpd (ENSDORG00000006993) Rodentia_A ANCESTRAL SPECIES 15 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00520000058758 ENSGT00390000016042 ENSGT00390000017848 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a Hystricomorpha ANCESTRAL SPECIES 56 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Hystricomorpha_a ANCESTRAL SPECIES 62 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT01030000237896 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Guinea pig MODERN SPECIES 62 WAPL (ENSCPOG00000012961) GRID1 (ENSCPOG00000010412) CCSER2 (ENSCPOG00000003617) RGR (ENSCPOG00000022556) LRIT1 (ENSCPOG00000015393) LRIT2 (ENSCPOG00000015390) CDHR1 (ENSCPOG00000005235) ENSCPOG00000034121 GHITM (ENSCPOG00000006432) NRG3 (ENSCPOG00000012186) SH2D4B (ENSCPOG00000003471) #17 TSPAN14 (ENSCPOG00000009896) #18 PRXL2A (ENSCPOG00000006552) #19 DYDC2 (ENSCPOG00000035691) #20 DYDC1 (ENSCPOG00000006995) MAT1A (ENSCPOG00000013447) #22 ENSCPOG00000032092 ENSCPOG00000027540 SFTPD (ENSCPOG00000007463) Hystricomorpha_b ANCESTRAL SPECIES 87 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT01030000237896 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Long-tailed chinchilla MODERN SPECIES 217 WAPL (ENSCLAG00000000189) GRID1 (ENSCLAG00000000120) CCSER2 (ENSCLAG00000000521) RGR (ENSCLAG00000000310) LRIT1 (ENSCLAG00000000263) LRIT2 (ENSCLAG00000000247) CDHR1 (ENSCLAG00000000482) ENSCLAG00000000449 GHITM (ENSCLAG00000000416) NRG3 (ENSCLAG00000001117) SH2D4B (ENSCLAG00000000290) #17 TSPAN14 (ENSCLAG00000000279) #18 PRXL2A (ENSCLAG00000000254) #19 DYDC2 (ENSCLAG00000000143) #20 DYDC1 (ENSCLAG00000000126) MAT1A (ENSCLAG00000000085) #22 ENSCLAG00000000065 ENSCLAG00000000944 SFTPD (ENSCLAG00000000893) Degu MODERN SPECIES 173 CCSER2 (ENSODEG00000010793) RGR (ENSODEG00000011393) LRIT1 (ENSODEG00000012611) LRIT2 (ENSODEG00000011609) CDHR1 (ENSODEG00000010766) ENSODEG00000012481 ENSODEG00000011340 ENSODEG00000012959 NRG3 (ENSODEG00000011562) SH2D4B (ENSODEG00000013141) #17 TSPAN14 (ENSODEG00000010478) #18 PRXL2A (ENSODEG00000012446) #19 ENSODEG00000019887 DYDC2 (ENSODEG00000010966) #20 DYDC1 (ENSODEG00000010939) MAT1A (ENSODEG00000011227) #22 ENSODEG00000011120 ENSODEG00000011470 ENSODEG00000010292 Naked mole-rat female MODERN SPECIES 7 LRIT2 (ENSHGLG00000012056) CDHR1 (ENSHGLG00000012222) GPR15LG (ENSHGLG00000050798) ENSHGLG00000004941 ENSHGLG00000042835 ENSHGLG00000033515 ENSHGLG00000041944 ENSHGLG00000006241 SH2D4B (ENSHGLG00000007947) #17 TSPAN14 (ENSHGLG00000008596) #18 PRXL2A (ENSHGLG00000008942) #19 ENSHGLG00000048071 ENSHGLG00000048270 ENSHGLG00000005445 #20 DYDC1 (ENSHGLG00000005866) ENSHGLG00000007667 #22 ENSHGLG00000009001 ENSHGLG00000010093 ENSHGLG00000036564 ENSHGLG00000032865 ENSHGLG00000008417 ENSHGLG00000008456 ENSHGLG00000037791 ENSHGLG00000020952 ENSHGLG00000045248 ENSHGLG00000034451 ENSHGLG00000034932 ENSHGLG00000025275 ENSHGLG00000045404 ENSHGLG00000019982 ENSHGLG00000002153 Sciuridae ANCESTRAL SPECIES 30 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091 #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b ENSGT00390000016042 ENSGT00390000017848 ENSGT00940000156914 ENSGT00390000008264 ENSGT00940000156008 ENSGT01030000234539.b.b.b ENSGT00390000000153.l.a ENSGT00930000151028 ENSGT00940000155303 ENSGT00940000154935 ENSGT00940000153289.a.a.a ENSGT00390000014618.a Eurasian red squirrel MODERN SPECIES 13 ENSSVLG00005003751 CCSER2 (ENSSVLG00005003778) RGR (ENSSVLG00005003817) LRIT1 (ENSSVLG00005003867) LRIT2 (ENSSVLG00005003885) CDHR1 (ENSSVLG00005003916) GPR15LG (ENSSVLG00005003966) GHITM (ENSSVLG00005003987) NRG3 (ENSSVLG00005004056) ENSSVLG00005004095 SH2D4B (ENSSVLG00005004103) #17 TSPAN14 (ENSSVLG00005004151) #18 PRXL2A (ENSSVLG00005004219) #19 DYDC2 (ENSSVLG00005004236) #20 DYDC1 (ENSSVLG00005004260) MAT1A (ENSSVLG00005004294) #22 ENSSVLG00005004335 ENSSVLG00005004372 SFTPD (ENSSVLG00005004412) ENSSVLG00005004436 ENSSVLG00005006012 ENSSVLG00005006036 ENSSVLG00005006056 ENSSVLG00005006085 ENSSVLG00005006106 ENSSVLG00005006135 ENSSVLG00005006190 TMEM254 (ENSSVLG00005006215) PLAC9 (ENSSVLG00005006256) ANXA11 (ENSSVLG00005006301) ENSSVLG00005006337 Marmotini ANCESTRAL SPECIES 16 ENSGT00390000015768 ENSGT00940000155910 ENSGT00940000153912.A ENSGT01090000260051.b.a.a.b.b ENSGT00940000156033 ENSGT00940000159143 ENSGT00940000155509 ENSGT00390000015172 ENSGT01050000244940.a.b ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091.a #20 ENSGT00940000161631 ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Marmotini_b ANCESTRAL SPECIES 249 ENSGT00940000156754.a.b ENSGT00940000159732 #17 ENSGT00940000159235 #18 ENSGT00940000161199 #19 ENSGT00940000162091.a #20 ENSGT00940000161631.g ENSGT00950000183185.c.a.b #22 ENSGT00940000156653 ENSGT00940000154368.k ENSGT00940000155748.b Arctic ground squirrel MODERN SPECIES 339 SH2D4B (ENSUPAG00010002361) #17 TSPAN14 (ENSUPAG00010002338) #18 PRXL2A (ENSUPAG00010002323) #19 ENSUPAG00010002313 #20 ENSUPAG00010002305 MAT1A (ENSUPAG00010002295) #22 ENSUPAG00010002288 ENSUPAG00010002281 SFTPD (ENSUPAG00010002275) ENSUPAG00010002270 Squirrel MODERN SPECIES 316 ENSSTOG00000022933 SH2D4B (ENSSTOG00000003332) #17 TSPAN14 (ENSSTOG00000012873) #18 PRXL2A (ENSSTOG00000012864) #19 DYDC2 (ENSSTOG00000012860) #20 DYDC1 (ENSSTOG00000012858) MAT1A (ENSSTOG00000007082) #22 ENSSTOG00000030982 ENSSTOG00000022645 SFTPD (ENSSTOG00000020181) Alpin marmot MODERN SPECIES 66 WAPL (ENSMMMG00000011412) GRID1 (ENSMMMG00000011366) CCSER2 (ENSMMMG00000011155) RGR (ENSMMMG00000011130) LRIT1 (ENSMMMG00000011121) LRIT2 (ENSMMMG00000011116) CDHR1 (ENSMMMG00000011089) GPR15LG (ENSMMMG00000011077) GHITM (ENSMMMG00000011060) NRG3 (ENSMMMG00000010985) SH2D4B (ENSMMMG00000010944) #17 TSPAN14 (ENSMMMG00000010918) #18 PRXL2A (ENSMMMG00000010895) #19 ENSMMMG00000010884 #20 DYDC1 (ENSMMMG00000010873) MAT1A (ENSMMMG00000010849) #22 ENSMMMG00000010829 ENSMMMG00000010822 SFTPD (ENSMMMG00000010810) ENSMMMG00000010806 Tree shrew MODERN SPECIES 2500 DYDC1 (ENSTBEG00000015714) MAT1A (ENSTBEG00000015565) #22