Mammalia	ANCESTRAL SPECIES	26								ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Theria	ANCESTRAL SPECIES	14								ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Eutheria	ANCESTRAL SPECIES	12								ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Glires	ANCESTRAL SPECIES	12	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Muroidea	ANCESTRAL SPECIES	54								ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus	ANCESTRAL SPECIES	10	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Shrew mouse	MODERN SPECIES	20	Dock4 (MGP_PahariEiJ_G0029478) #7	Immp2l (MGP_PahariEiJ_G0029479) #8	Lrrn3 (MGP_PahariEiJ_G0029480) #9	Dnajb9 (MGP_PahariEiJ_G0029481) #10	Pnpla8 (MGP_PahariEiJ_G0029482) #11	Nrcam (MGP_PahariEiJ_G0029483) #12	Stxbp6 (MGP_PahariEiJ_G0029484) #13	Nova1 (MGP_PahariEiJ_G0029485) #14	Foxg1 (MGP_PahariEiJ_G0029486) #15	MGP_PahariEiJ_G0029487 #16	Prkd1 (MGP_PahariEiJ_G0029488) #17	G2e3 (MGP_PahariEiJ_G0029489) #18	Scfd1 (MGP_PahariEiJ_G0029490) #19	Coch (MGP_PahariEiJ_G0029491) #20	Strn3 (MGP_PahariEiJ_G0029492) #21	Ap4s1 (MGP_PahariEiJ_G0029493) #22	Hectd1 (MGP_PahariEiJ_G0029494) #23	Heatr5a (MGP_PahariEiJ_G0029495) #24	Dtd2 (MGP_PahariEiJ_G0029496) #25	Gpr33 (MGP_PahariEiJ_G0029497) #26	Nubpl (MGP_PahariEiJ_G0029498) #27	Arhgap5 (MGP_PahariEiJ_G0029499) #28	Akap6 (MGP_PahariEiJ_G0029500) #29	Npas3 (MGP_PahariEiJ_G0029501) #30	Egln3 (MGP_PahariEiJ_G0029502) #31	Sptssa (MGP_PahariEiJ_G0029503) #32	Eapp (MGP_PahariEiJ_G0029504) #33	Snx6 (MGP_PahariEiJ_G0029505) #34	Cfl2 (MGP_PahariEiJ_G0029506) #35	Baz1a (MGP_PahariEiJ_G0029507) #36	MGP_PahariEiJ_G0029508 #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT01100000267143	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT01100000267143	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mouse	MODERN SPECIES	3	Dock4 (ENSMUSG00000035954) #7	Immp2l (ENSMUSG00000056899) #8	Lrrn3 (ENSMUSG00000036295) #9	Dnajb9 (ENSMUSG00000014905) #10	Pnpla8 (ENSMUSG00000036257) #11	Nrcam (ENSMUSG00000020598) #12	Stxbp6 (ENSMUSG00000046314) #13	Nova1 (ENSMUSG00000021047) #14	Foxg1 (ENSMUSG00000020950) #16	Gm43517 (ENSMUSG00000089922)	Prkd1 (ENSMUSG00000002688) #17	G2e3 (ENSMUSG00000035293) #18	Scfd1 (ENSMUSG00000020952) #19	Coch (ENSMUSG00000020953) #20	Strn3 (ENSMUSG00000020954) #21	Ap4s1 (ENSMUSG00000020955) #22	Hectd1 (ENSMUSG00000035247) #23	Heatr5a (ENSMUSG00000035181) #24	Dtd2 (ENSMUSG00000020956) #25	Gpr33 (ENSMUSG00000035148) #26	Nubpl (ENSMUSG00000035142) #27	Arhgap5 (ENSMUSG00000035133) #28	Akap6 (ENSMUSG00000061603) #29	Npas3 (ENSMUSG00000021010) #30	Egln3 (ENSMUSG00000035105) #31	Sptssa (ENSMUSG00000044408) #32	Eapp (ENSMUSG00000054302) #33	Snx6 (ENSMUSG00000005656) #34	Cfl2 (ENSMUSG00000062929) #35	Baz1a (ENSMUSG00000035021) #36	2700097O09Rik (ENSMUSG00000062198)
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000155659 #7	ENSGT00550000075044 #8	ENSGT00940000160513 #9	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT01100000267143	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Steppe mouse	MODERN SPECIES	3314								ENSMSIG00000002590	ENSMSIG00000002603	ENSMSIG00000002627	ENSMSIG00000002727	G2e3 (ENSMSIG00000002770) #18	Scfd1 (ENSMSIG00000003039) #19	Coch (ENSMSIG00000003151) #20	Strn3 (ENSMSIG00000003232) #21	Ap4s1 (ENSMSIG00000003653) #22	Hectd1 (ENSMSIG00000003683) #23	ENSMSIG00000003791	Heatr5a (ENSMSIG00000003804) #24	Dtd2 (ENSMSIG00000003964) #25	Gpr33 (ENSMSIG00000003989) #26	Nubpl (ENSMSIG00000004004) #27	Arhgap5 (ENSMSIG00000004050) #28	Akap6 (ENSMSIG00000004164) #29	Npas3 (ENSMSIG00000004473) #30	ENSMSIG00000004706	ENSMSIG00000004720	Egln3 (ENSMSIG00000004731) #31	ENSMSIG00000004766
spretus	MODERN SPECIES	3	Nrcam (MGP_SPRETEiJ_G0018568) #12	Stxbp6 (MGP_SPRETEiJ_G0018569) #13	Nova1 (MGP_SPRETEiJ_G0018570) #14	MGP_SPRETEiJ_G0018571	MGP_SPRETEiJ_G0018572	Foxg1 (MGP_SPRETEiJ_G0018573) #16	MGP_SPRETEiJ_G0018574 #16	MGP_SPRETEiJ_G0018575	Prkd1 (MGP_SPRETEiJ_G0018576) #17	MGP_SPRETEiJ_G0018577	MGP_SPRETEiJ_G0018578	G2e3 (MGP_SPRETEiJ_G0018579) #18	Scfd1 (MGP_SPRETEiJ_G0018580) #19	Coch (MGP_SPRETEiJ_G0018581) #20	Strn3 (MGP_SPRETEiJ_G0018582) #21	Ap4s1 (MGP_SPRETEiJ_G0018583) #22	Hectd1 (MGP_SPRETEiJ_G0018584) #23	Heatr5a (MGP_SPRETEiJ_G0018585) #24	Dtd2 (MGP_SPRETEiJ_G0018586) #25	Gpr33 (MGP_SPRETEiJ_G0018587) #26	Nubpl (MGP_SPRETEiJ_G0018588) #27	Arhgap5 (MGP_SPRETEiJ_G0018589) #28	Akap6 (MGP_SPRETEiJ_G0018590) #29	Npas3 (MGP_SPRETEiJ_G0018591) #30	Egln3 (MGP_SPRETEiJ_G0018592) #31	Sptssa (MGP_SPRETEiJ_G0018593) #32	Eapp (MGP_SPRETEiJ_G0018594) #33	Snx6 (MGP_SPRETEiJ_G0018595) #34	Cfl2 (MGP_SPRETEiJ_G0018596) #35	Baz1a (MGP_SPRETEiJ_G0018597) #36	MGP_SPRETEiJ_G0018598 #37
Ryukyu mouse	MODERN SPECIES	3	Immp2l (MGP_CAROLIEiJ_G0017722) #8	Lrrn3 (MGP_CAROLIEiJ_G0017723) #9	Dnajb9 (MGP_CAROLIEiJ_G0017724) #10	Pnpla8 (MGP_CAROLIEiJ_G0017725) #11	Nrcam (MGP_CAROLIEiJ_G0017726) #12	Stxbp6 (MGP_CAROLIEiJ_G0017727) #13	Nova1 (MGP_CAROLIEiJ_G0017728) #14	Foxg1 (MGP_CAROLIEiJ_G0017729) #16	MGP_CAROLIEiJ_G0017730 #16	MGP_CAROLIEiJ_G0017731	Prkd1 (MGP_CAROLIEiJ_G0017732) #17	G2e3 (MGP_CAROLIEiJ_G0017733) #18	Scfd1 (MGP_CAROLIEiJ_G0017734) #19	Coch (MGP_CAROLIEiJ_G0017735) #20	Strn3 (MGP_CAROLIEiJ_G0017736) #21	Ap4s1 (MGP_CAROLIEiJ_G0017737) #22	Hectd1 (MGP_CAROLIEiJ_G0017738) #23	Heatr5a (MGP_CAROLIEiJ_G0017739) #24	Dtd2 (MGP_CAROLIEiJ_G0017740) #25	Gpr33 (MGP_CAROLIEiJ_G0017741) #26	Nubpl (MGP_CAROLIEiJ_G0017742) #27	Arhgap5 (MGP_CAROLIEiJ_G0017743) #28	Akap6 (MGP_CAROLIEiJ_G0017744) #29	Npas3 (MGP_CAROLIEiJ_G0017745) #30	Egln3 (MGP_CAROLIEiJ_G0017746) #31	Sptssa (MGP_CAROLIEiJ_G0017747) #32	Eapp (MGP_CAROLIEiJ_G0017748) #33	Snx6 (MGP_CAROLIEiJ_G0017749) #34	Cfl2 (MGP_CAROLIEiJ_G0017750) #35	Baz1a (MGP_CAROLIEiJ_G0017751) #36	MGP_CAROLIEiJ_G0017752 #37
Rat	MODERN SPECIES	16	Dnajb9 (ENSRNOG00000004006) #10	ENSRNOG00000064508	Pnpla8 (ENSRNOG00000039091) #11	Nrcam (ENSRNOG00000004067) #12	Stxbp6 (ENSRNOG00000004198) #13	Nova1 (ENSRNOG00000031440) #14	ENSRNOG00000068318	RGD1559629 (ENSRNOG00000031317)	Foxg1 (ENSRNOG00000047891) #16	Prkd1 (ENSRNOG00000004165) #17	ENSRNOG00000066628	G2e3 (ENSRNOG00000004232) #18	Scfd1 (ENSRNOG00000031203) #19	Coch (ENSRNOG00000005286) #20	Strn3 (ENSRNOG00000060335) #21	Ap4s1 (ENSRNOG00000005765) #22	Hectd1 (ENSRNOG00000006905) #23	Heatr5a (ENSRNOG00000006483) #24	Dtd2 (ENSRNOG00000006727) #25	Gpr33-ps1 (ENSRNOG00000038990) #26	Nubpl (ENSRNOG00000027444) #27	ENSRNOG00000070950	Arhgap5 (ENSRNOG00000004696) #28	Akap6 (ENSRNOG00000004841) #29	Npas3 (ENSRNOG00000068162) #30	ENSRNOG00000066295	Egln3 (ENSRNOG00000005053) #31	Timm23b (ENSRNOG00000031285)	Rps10 (ENSRNOG00000066637)	Sptssa (ENSRNOG00000004292) #32	Eapp (ENSRNOG00000004509) #33
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00940000160513 #9	ENSGT00940000164174	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Cricetidae_B	ANCESTRAL SPECIES	44	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00940000160513 #9	ENSGT00550000075044 #8	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00940000172098	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000030494	Dnajb9 (ENSPEMG00000025224) #10	Pnpla8 (ENSPEMG00000013308) #11	Nrcam (ENSPEMG00000000666) #12	ENSPEMG00000008750	Stxbp6 (ENSPEMG00000006826) #13	Nova1 (ENSPEMG00000006503) #14	Foxg1 (ENSPEMG00000014163) #16	ENSPEMG00000011512	ENSPEMG00000029110	Prkd1 (ENSPEMG00000011695) #17	G2e3 (ENSPEMG00000014724) #18	Scfd1 (ENSPEMG00000013333) #19	Coch (ENSPEMG00000014561) #20	Strn3 (ENSPEMG00000018694) #21	Ap4s1 (ENSPEMG00000028602) #22	Hectd1 (ENSPEMG00000011192) #23	Heatr5a (ENSPEMG00000014455) #24	Dtd2 (ENSPEMG00000020439) #25	Gpr33 (ENSPEMG00000015422) #26	Nubpl (ENSPEMG00000008972) #27	Arhgap5 (ENSPEMG00000000871) #28	Akap6 (ENSPEMG00000012708) #29	Npas3 (ENSPEMG00000012109) #30	Egln3 (ENSPEMG00000005061) #31	Sptssa (ENSPEMG00000030128) #32	ENSPEMG00000017758	Snx6 (ENSPEMG00000021989) #34	ENSPEMG00000028812 #34	Cfl2 (ENSPEMG00000007781) #35	Baz1a (ENSPEMG00000014114) #36
Prairie vole	MODERN SPECIES		Zfp639 (ENSMOCG00000020301)	Kcnmb3 (ENSMOCG00000016804)	Pik3ca (ENSMOCG00000013980)	Zmat3 (ENSMOCG00000018844)	Kcnmb2 (ENSMOCG00000017078)	Egfem1 (ENSMOCG00000018732)	Mecom (ENSMOCG00000021596)	ENSMOCG00000020206	Actrt3 (ENSMOCG00000015666)	Mynn (ENSMOCG00000015696)	Lrrc34 (ENSMOCG00000016121)	ENSMOCG00000005957	Lrriq4 (ENSMOCG00000004550)	Coch (ENSMOCG00000019723) #20	ENSMOCG00000012615 #21	Ap4s1 (ENSMOCG00000007389) #22	Hectd1 (ENSMOCG00000014999) #23	Heatr5a (ENSMOCG00000022578) #24	Dtd2 (ENSMOCG00000013778) #25	Nubpl (ENSMOCG00000014184) #27	Arhgap5 (ENSMOCG00000004835) #28	Akap6 (ENSMOCG00000011185) #29	Npas3 (ENSMOCG00000019190) #30	Egln3 (ENSMOCG00000012694) #31	ENSMOCG00000005461	Sptssa (ENSMOCG00000012586) #32	ENSMOCG00000015865	ENSMOCG00000010297	Snx6 (ENSMOCG00000005706) #34	Cfl2 (ENSMOCG00000001143) #35	ENSMOCG00000021225 #36
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00390000010852	ENSGT00940000155659 #7	ENSGT00940000160513 #9	ENSGT00550000075044 #8	ENSGT00940000156246 #10	ENSGT00940000154738.a #11	ENSGT00940000155419 #12	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001009365	DNAJB9 (ENSCGRG00001006614) #10	Pnpla8 (ENSCGRG00001002943) #11	Nrcam (ENSCGRG00001023691) #12	ENSCGRG00001015987	Stxbp6 (ENSCGRG00001016560) #13	ENSCGRG00001015898	Nova1 (ENSCGRG00001024030) #14	ENSCGRG00001023108	Foxg1 (ENSCGRG00001009864) #16	Prkd1 (ENSCGRG00001019739) #17	G2e3 (ENSCGRG00001015112) #18	Scfd1 (ENSCGRG00001013495) #19	Coch (ENSCGRG00001010363) #20	Strn3 (ENSCGRG00001000550) #21	Ap4s1 (ENSCGRG00001023362) #22	Hectd1 (ENSCGRG00001024884) #23	ENSCGRG00001024436	Heatr5a (ENSCGRG00001017067) #24	Dtd2 (ENSCGRG00001015902) #25	Gpr33 (ENSCGRG00001011244) #26	ENSCGRG00001006641	Nubpl (ENSCGRG00001004006) #27	Arhgap5 (ENSCGRG00001002196) #28	ENSCGRG00001009818	Akap6 (ENSCGRG00001015059) #29	Npas3 (ENSCGRG00001014006) #30	Egln3 (ENSCGRG00001011120) #31	Sptssa (ENSCGRG00001009767) #32	Eapp (ENSCGRG00001019760) #33	Snx6 (ENSCGRG00001015718) #34
Golden Hamster	MODERN SPECIES	678	Tmem208 (ENSMAUG00000019912)	Fbxl9 (ENSMAUG00000020647)	Elmo3 (ENSMAUG00000018747)	ENSMAUG00000021932	Pnpla8 (ENSMAUG00000018550) #11	ENSMAUG00000004823 #12	ENSMAUG00000012524 #12	Stxbp6 (ENSMAUG00000009926) #13	ENSMAUG00000000995 #14	Foxg1 (ENSMAUG00000019070) #16	Prkd1 (ENSMAUG00000022213) #17	G2e3 (ENSMAUG00000021191) #18	Scfd1 (ENSMAUG00000003557) #19	ENSMAUG00000013698 #20	Strn3 (ENSMAUG00000021272) #21	ENSMAUG00000021341 #22	Hectd1 (ENSMAUG00000004033) #23	Heatr5a (ENSMAUG00000009777) #24	ENSMAUG00000013425	Dtd2 (ENSMAUG00000016991) #25	ENSMAUG00000014362 #26	Nubpl (ENSMAUG00000016658) #27
Upper Galilee mountains blind mole rat	MODERN SPECIES	1046												G2e3 (ENSNGAG00000005306) #18	Scfd1 (ENSNGAG00000016247) #19	Coch (ENSNGAG00000000675) #20	Strn3 (ENSNGAG00000009581) #21	Ap4s1 (ENSNGAG00000016226) #22	Hectd1 (ENSNGAG00000020429) #23	Heatr5a (ENSNGAG00000019811) #24	ENSNGAG00000011221
Lesser Egyptian jerboa	MODERN SPECIES	86	Sdr39u1 (ENSJJAG00000019692)	ENSJJAG00000004128 ##22	Cma1 (ENSJJAG00000014442)	ENSJJAG00000016083	Ctsg (ENSJJAG00000009878)	ENSJJAG00000012054	ENSJJAG00000012531	ENSJJAG00000015223	ENSJJAG00000001002	Nova1 (ENSJJAG00000012915) #14	ENSJJAG00000001174	ENSJJAG00000001269 #16	G2e3 (ENSJJAG00000014439) #18	Coch (ENSJJAG00000019025) #20	Strn3 (ENSJJAG00000019703) #21	Ap4s1 (ENSJJAG00000022804) #22	Hectd1 (ENSJJAG00000001344) #23	Heatr5a (ENSJJAG00000019420) #24	ENSJJAG00000015737 #25	ENSJJAG00000019398	Arhgap5 (ENSJJAG00000022832) #28	Egln3 (ENSJJAG00000013045) #31	ENSJJAG00000003660	Sptssa (ENSJJAG00000014413) #32	ENSJJAG00000015801 #33
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	487										ENSDORG00000029359	Prkd1 (ENSDORG00000000354) #17	G2e3 (ENSDORG00000010913) #18	Scfd1 (ENSDORG00000013408) #19	Coch (ENSDORG00000006859) #20	Strn3 (ENSDORG00000006860) #21	ENSDORG00000009468 #22	Hectd1 (ENSDORG00000005774) #23	Heatr5a (ENSDORG00000011883) #24	Dtd2 (ENSDORG00000009945) #25	Nubpl (ENSDORG00000013986) #27	Arhgap5 (ENSDORG00000005120) #28	Akap6 (ENSDORG00000011551) #29	Npas3 (ENSDORG00000000860) #30
Kangaroo rat	MODERN SPECIES	456																ENSDORG00000029969 #22	ENSDORG00000008588	ENSDORG00000001970	Naa35 (ENSDORG00000001956)	Agtpbp1 (ENSDORG00000011166)	ENSDORG00000024497	Ntrk2 (ENSDORG00000007365)	ENSDORG00000024890	Slc28a3 (ENSDORG00000008007)	Rmi1 (ENSDORG00000028852)	ENSDORG00000016024	2210016F16Rik (ENSDORG00000016023)	Kif27 (ENSDORG00000011169)	Gkap1 (ENSDORG00000026066)	Ubqln1 (ENSDORG00000015266)	Idnk (ENSDORG00000008263)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Naked mole-rat female	MODERN SPECIES	11	CIDEB (ENSHGLG00000002818)	NOP9 (ENSHGLG00000002852)	DHRS1 (ENSHGLG00000037207)	RABGGTA (ENSHGLG00000002942)	ENSHGLG00000003157	ENSHGLG00000003920	ENSHGLG00000043958	ENSHGLG00000002296	ENSHGLG00000043059	ENSHGLG00000045310	ENSHGLG00000036541	ENSHGLG00000004538	COCH (ENSHGLG00000002211) #20	ENSHGLG00000002072 #21	ENSHGLG00000031903	ENSHGLG00000006911 #22	HECTD1 (ENSHGLG00000004613) #23	ENSHGLG00000038178	HEATR5A (ENSHGLG00000002799) #24	ENSHGLG00000038655	DTD2 (ENSHGLG00000046094) #25	GPR33 (ENSHGLG00000019958) #26	ENSHGLG00000001878	NUBPL (ENSHGLG00000043820) #27	ENSHGLG00000003444	ENSHGLG00000043700	ENSHGLG00000003356 #28	ENSHGLG00000050973	ENSHGLG00000048569	ENSHGLG00000036198	ENSHGLG00000050257
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Guinea pig	MODERN SPECIES	77				ENSCPOG00000031139	ENSCPOG00000024606	ENSCPOG00000024349	ENSCPOG00000022248	STXBP6 (ENSCPOG00000033780) #13	NOVA1 (ENSCPOG00000030872) #14	PRKD1 (ENSCPOG00000004855) #17	G2E3 (ENSCPOG00000002781) #18	ENSCPOG00000013059	SCFD1 (ENSCPOG00000007229) #19	COCH (ENSCPOG00000015577) #20	STRN3 (ENSCPOG00000015579) #21	AP4S1 (ENSCPOG00000005118) #22	HECTD1 (ENSCPOG00000013566) #23	ENSCPOG00000036916	HEATR5A (ENSCPOG00000015747) #24	DTD2 (ENSCPOG00000036705) #25	GPR33 (ENSCPOG00000038573) #26	NUBPL (ENSCPOG00000010163) #27	ENSCPOG00000030336	ARHGAP5 (ENSCPOG00000007798) #28
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	116	ENSCLAG00000011419	ENSCLAG00000010999	ENSCLAG00000010184	ENSCLAG00000010208	GZMH (ENSCLAG00000010860)	ENSCLAG00000010055	STXBP6 (ENSCLAG00000009408) #13	NOVA1 (ENSCLAG00000008948) #14	ENSCLAG00000015104	FOXG1 (ENSCLAG00000011906) #16	PRKD1 (ENSCLAG00000011245) #17	G2E3 (ENSCLAG00000008721) #18	SCFD1 (ENSCLAG00000012279) #19	COCH (ENSCLAG00000011067) #20	ENSCLAG00000011538 #21	ENSCLAG00000009036 #22	HECTD1 (ENSCLAG00000011096) #23	HEATR5A (ENSCLAG00000009555) #24	DTD2 (ENSCLAG00000014737) #25	GPR33 (ENSCLAG00000013344) #26	NUBPL (ENSCLAG00000011929) #27	ARHGAP5 (ENSCLAG00000015975) #28	AKAP6 (ENSCLAG00000013553) #29	NPAS3 (ENSCLAG00000013939) #30	ENSCLAG00000011029	EGLN3 (ENSCLAG00000010720) #31	ENSCLAG00000012005	EAPP (ENSCLAG00000013007) #33	SNX6 (ENSCLAG00000012353) #34	ENSCLAG00000012876 #35	BAZ1A (ENSCLAG00000015173) #36
Long-tailed chinchilla	MODERN SPECIES	132	ZNF365 (ENSCLAG00000010746)	ADO (ENSCLAG00000010337)	EGR2 (ENSCLAG00000009233)	ENSCLAG00000010415	NRBF2 (ENSCLAG00000011072)	JMJD1C (ENSCLAG00000012242)	REEP3 (ENSCLAG00000012622)	ENSCLAG00000012770	ENSCLAG00000009474	CTNNA3 (ENSCLAG00000010308)	LRRTM3 (ENSCLAG00000011661)	DNAJC12 (ENSCLAG00000012847)	SIRT1 (ENSCLAG00000015502)	HERC4 (ENSCLAG00000016138)	MYPN (ENSCLAG00000011004)	ENSCLAG00000014026 #22	PBLD (ENSCLAG00000010284)	HNRNPH3 (ENSCLAG00000010680)	RUFY2 (ENSCLAG00000012405)	DNA2 (ENSCLAG00000012086)	SLC25A16 (ENSCLAG00000015512)	CCAR1 (ENSCLAG00000011807)	THBS4 (ENSCLAG00000009452)	MTX3 (ENSCLAG00000011076)	CMYA5 (ENSCLAG00000009334)	TENT2 (ENSCLAG00000010023)	HOMER1 (ENSCLAG00000010571)	JMY (ENSCLAG00000009333)	BHMT (ENSCLAG00000010253)	BHMT2 (ENSCLAG00000013633)	DMGDH (ENSCLAG00000014854)
Degu	DUPLICATION
Degu	MODERN SPECIES	331																ENSODEG00000002423 #22	ENSODEG00000002362	ENSODEG00000002343	ENSODEG00000002260	ENSODEG00000002224	ENSODEG00000002218
Degu	MODERN SPECIES	127					ENSODEG00000005143	ENSODEG00000005132	FOXG1 (ENSODEG00000005094) #16	ENSODEG00000019116	ENSODEG00000005027	PRKD1 (ENSODEG00000004844) #17	ENSODEG00000004710	G2E3 (ENSODEG00000004806) #18	SCFD1 (ENSODEG00000004638) #19	COCH (ENSODEG00000004531) #20	STRN3 (ENSODEG00000004497) #21	ENSODEG00000004725 #22	HECTD1 (ENSODEG00000004383) #23	ENSODEG00000019035	HEATR5A (ENSODEG00000003991) #24	ENSODEG00000003834 #25	ENSODEG00000003785	NUBPL (ENSODEG00000008332) #27	ENSODEG00000008269	ENSODEG00000008253	ARHGAP5 (ENSODEG00000008123) #28	AKAP6 (ENSODEG00000008112) #29	ENSODEG00000008077	NPAS3 (ENSODEG00000007900) #30	STRC (ENSODEG00000007474)	ENSODEG00000007361	ENSODEG00000005621 #31
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Marmotini_b	ANCESTRAL SPECIES	108						ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Arctic ground squirrel	MODERN SPECIES	18		ENSUPAG00010014330	ENSUPAG00010014315	ENSUPAG00010014307	ENSUPAG00010012638	ENSUPAG00010012609	STXBP6 (ENSUPAG00010012595) #13	NOVA1 (ENSUPAG00010012581) #14	ENSUPAG00010012575	FOXG1 (ENSUPAG00010012563) #16	PRKD1 (ENSUPAG00010012522) #17	G2E3 (ENSUPAG00010012503) #18	SCFD1 (ENSUPAG00010012422) #19	COCH (ENSUPAG00010012392) #20	STRN3 (ENSUPAG00010012325) #21	AP4S1 (ENSUPAG00010012317) #22	HECTD1 (ENSUPAG00010012181) #23	HEATR5A (ENSUPAG00010002104) #24	ENSUPAG00010002029 #25	GPR33 (ENSUPAG00010002026) #26	NUBPL (ENSUPAG00010002012) #27	ARHGAP5 (ENSUPAG00010001993) #28	AKAP6 (ENSUPAG00010001952) #29	ENSUPAG00010001945	NPAS3 (ENSUPAG00010001878) #30	EGLN3 (ENSUPAG00010001862) #31	SPTSSA (ENSUPAG00010001850) #32	ENSUPAG00010001845	EAPP (ENSUPAG00010001833) #33	SNX6 (ENSUPAG00010001786) #34	ENSUPAG00010001776 #35
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	84	ENSSTOG00000011910	ENSSTOG00000022442	AKR1E2 (ENSSTOG00000014534)	ENSSTOG00000031995	KLF6 (ENSSTOG00000007751)	PITRM1 (ENSSTOG00000006348)	PFKP (ENSSTOG00000006311)	ADARB2 (ENSSTOG00000014329)	WDR37 (ENSSTOG00000014301)	ENSSTOG00000023260	IDI2 (ENSSTOG00000010058)	ENSSTOG00000010042	LARP4B (ENSSTOG00000000587)	DIP2C (ENSSTOG00000012335)	ZMYND11 (ENSSTOG00000010061)	ENSSTOG00000034561 #22	CHRM3 (ENSSTOG00000021752)	RYR2 (ENSSTOG00000014690)	MTR (ENSSTOG00000004093)	ACTN2 (ENSSTOG00000007354)	HEATR1 (ENSSTOG00000007293)	LGALS8 (ENSSTOG00000007266)	EDARADD (ENSSTOG00000022830)	ERO1B (ENSSTOG00000013810)	GPR137B (ENSSTOG00000013802)	NID1 (ENSSTOG00000015736)	LYST (ENSSTOG00000015713)	GNG4 (ENSSTOG00000015712)	ENSSTOG00000030497	ENSSTOG00000020260	B3GALNT2 (ENSSTOG00000015705)
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	94			ENSSTOG00000023363	ENSSTOG00000029160	ENSSTOG00000027256	ENSSTOG00000023097	STXBP6 (ENSSTOG00000013479) #13	NOVA1 (ENSSTOG00000020788) #14	ENSSTOG00000027642	FOXG1 (ENSSTOG00000024079) #16	PRKD1 (ENSSTOG00000003873) #17	G2E3 (ENSSTOG00000008924) #18	SCFD1 (ENSSTOG00000008939) #19	COCH (ENSSTOG00000000556) #20	STRN3 (ENSSTOG00000010749) #21	ENSSTOG00000010759 #22	HECTD1 (ENSSTOG00000023965) #23	HEATR5A (ENSSTOG00000004620) #24	ENSSTOG00000025562 #25	GPR33 (ENSSTOG00000027164) #26	NUBPL (ENSSTOG00000004688) #27	ARHGAP5 (ENSSTOG00000020291) #28	AKAP6 (ENSSTOG00000024157) #29	NPAS3 (ENSSTOG00000014736) #30	EGLN3 (ENSSTOG00000027368) #31	SPTSSA (ENSSTOG00000025158) #32	ENSSTOG00000005273 #33	SNX6 (ENSSTOG00000030590) #34	ENSSTOG00000001675 #35	BAZ1A (ENSSTOG00000012204) #36	ENSSTOG00000027145 #37
Squirrel	MODERN SPECIES	153								PCDH9 (ENSSTOG00000025475)	ENSSTOG00000032665	ENSSTOG00000019374	MAGEB18 (ENSSTOG00000010136)	ENSSTOG00000026907	ENSSTOG00000033066	ENSSTOG00000031082	ENSSTOG00000026622	ENSSTOG00000026056 #22	IL1RAPL1 (ENSSTOG00000016269)	ENSSTOG00000021156	NR0B1 (ENSSTOG00000025906)	TASL (ENSSTOG00000027484)	ENSSTOG00000008732	TAB3 (ENSSTOG00000027885)	ENSSTOG00000020610	ENSSTOG00000028562
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000011431	ENSMMMG00000011415	ENSMMMG00000009778	ENSMMMG00000009755	ENSMMMG00000009734	STXBP6 (ENSMMMG00000009706) #13	NOVA1 (ENSMMMG00000009673) #14	ENSMMMG00000009611 #16	PRKD1 (ENSMMMG00000009545) #17	ENSMMMG00000009512	ENSMMMG00000009483 #18	ENSMMMG00000009462 #18	SCFD1 (ENSMMMG00000009409) #19	COCH (ENSMMMG00000009368) #20	STRN3 (ENSMMMG00000007068) #21	AP4S1 (ENSMMMG00000007043) #22	HECTD1 (ENSMMMG00000006978) #23	HEATR5A (ENSMMMG00000006921) #24	DTD2 (ENSMMMG00000006910) #25	GPR33 (ENSMMMG00000006908) #26	NUBPL (ENSMMMG00000006890) #27	ENSMMMG00000006876	ARHGAP5 (ENSMMMG00000006856) #28	ENSMMMG00000006834 #29	ENSMMMG00000006799 #30	EGLN3 (ENSMMMG00000006788) #31	SPTSSA (ENSMMMG00000006776) #32	ENSMMMG00000006766	EAPP (ENSMMMG00000006761) #33	ENSMMMG00000006742 #34	ENSMMMG00000006738 #34
Alpin marmot	MODERN SPECIES		TRMT6 (ENSMMMG00000000614)	CHGB (ENSMMMG00000000597)	SHLD1 (ENSMMMG00000000588)	GPCPD1 (ENSMMMG00000000455)	PROKR2 (ENSMMMG00000000400)	CDS2 (ENSMMMG00000000346)	ENSMMMG00000000309	TMEM230 (ENSMMMG00000000268)	ENSMMMG00000000257	SLC23A2 (ENSMMMG00000000215)	RASSF2 (ENSMMMG00000000162)	PRND (ENSMMMG00000000142)	PRNP (ENSMMMG00000000138)	ENSMMMG00000000123	SMOX (ENSMMMG00000000044)	ENSMMMG00000023958 #22	PANK2 (ENSMMMG00000023957)	MAVS (ENSMMMG00000023955)	AP5S1 (ENSMMMG00000023953)	CDC25B (ENSMMMG00000023949)	CENPB (ENSMMMG00000023947)	SPEF1 (ENSMMMG00000023946)	ADISSP (ENSMMMG00000023945)	HSPA12B (ENSMMMG00000023943)	SIGLEC1 (ENSMMMG00000023929)	ADAM33 (ENSMMMG00000023924)	GFRA4 (ENSMMMG00000023923)	ATRN (ENSMMMG00000023922)	ENSMMMG00000023921	DNAAF9 (ENSMMMG00000023920)	SLC4A11 (ENSMMMG00000023919)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005004402	GZMB (ENSSVLG00005004217)	ENSSVLG00005004187	ENSSVLG00005004176	STXBP6 (ENSSVLG00005004162) #13	ENSSVLG00005004148	ENSSVLG00005004139	NOVA1 (ENSSVLG00005004100) #14	FOXG1 (ENSSVLG00005004066) #16	PRKD1 (ENSSVLG00005003998) #17	ENSSVLG00005003953 #18	SCFD1 (ENSSVLG00005003909) #19	ENSSVLG00005003853 #20	ENSSVLG00005003807 #20	STRN3 (ENSSVLG00005003765) #21	AP4S1 (ENSSVLG00005003726) #22	HECTD1 (ENSSVLG00005003644) #23	HEATR5A (ENSSVLG00005003550) #24	DTD2 (ENSSVLG00005003527) #25	GPR33 (ENSSVLG00005003516) #26	NUBPL (ENSSVLG00005003491) #27	ARHGAP5 (ENSSVLG00005003448) #28	AKAP6 (ENSSVLG00005003395) #29	NPAS3 (ENSSVLG00005003199) #30	EGLN3 (ENSSVLG00005003108) #31	ENSSVLG00005003092	ENSSVLG00005003086	ENSSVLG00005003068	ENSSVLG00005003053 #32	ENSSVLG00005003042 #33	ENSSVLG00005003024
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000672	ENSSVLG00005000638	ENSSVLG00005000613	CCDC93 (ENSSVLG00005000586)	INSIG2 (ENSSVLG00005000562)	EN1 (ENSSVLG00005000531)	MARCO (ENSSVLG00005000500)	C1QL2 (ENSSVLG00005000478)	STEAP3 (ENSSVLG00005000464)	C2orf76 (ENSSVLG00005000450)	DBI (ENSSVLG00005000415)	TMEM37 (ENSSVLG00005000377)	SCTR (ENSSVLG00005000343)	CFAP221 (ENSSVLG00005000301)	TMEM177 (ENSSVLG00005000277)	ENSSVLG00005000270 #22	PTPN4 (ENSSVLG00005000228)	EPB41L5 (ENSSVLG00005024139)	TMEM185B (ENSSVLG00005024068)	RALB (ENSSVLG00005024049)	INHBB (ENSSVLG00005024036)	ENSSVLG00005024019	ENSSVLG00005023991	GLI2 (ENSSVLG00005023981)	TFCP2L1 (ENSSVLG00005023914)	CLASP1 (ENSSVLG00005023791)	NIFK (ENSSVLG00005023724)	TSN (ENSSVLG00005023674)	ENSSVLG00005023632	ENSSVLG00005023597	ENSSVLG00005023566
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000160206	ENSGT00940000160923	ENSGT00940000161519	ENSGT00940000162110	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #13	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000167277	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Rabbit	MODERN SPECIES	8	ENSOCUG00000028992	STXBP6 (ENSOCUG00000005144) #13	ENSOCUG00000033166	ENSOCUG00000026942	NOVA1 (ENSOCUG00000017622) #14	ENSOCUG00000022058	ENSOCUG00000007554	ENSOCUG00000022201	ENSOCUG00000024246 #16	ENSOCUG00000037372	PRKD1 (ENSOCUG00000022585) #17	G2E3 (ENSOCUG00000007824) #18	SCFD1 (ENSOCUG00000007835) #19	COCH (ENSOCUG00000012042) #20	STRN3 (ENSOCUG00000011418) #21	AP4S1 (ENSOCUG00000011430) #22	HECTD1 (ENSOCUG00000003816) #23	ENSOCUG00000002021	HEATR5A (ENSOCUG00000007228) #24	ENSOCUG00000027034	DTD2 (ENSOCUG00000007778) #25	GPR33 (ENSOCUG00000022411) #26	NUBPL (ENSOCUG00000017713) #27	ARHGAP5 (ENSOCUG00000010548) #28	ENSOCUG00000025739	AKAP6 (ENSOCUG00000014205) #29	NPAS3 (ENSOCUG00000010632) #30	ENSOCUG00000008560 #31	ENSOCUG00000024362	EAPP (ENSOCUG00000003226) #33	SNX6 (ENSOCUG00000029421) #34
Pika	MODERN SPECIES	5266																AP4S1 (ENSOPRG00000016762) #22	HECTD1 (ENSOPRG00000002296) #23
Tree shrew	MODERN SPECIES	5970																ENSTBEG00000015333 #22
Primates	ANCESTRAL SPECIES	2	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34
Haplorrhini	ANCESTRAL SPECIES	12	ENSGT00940000162110	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34
Tarsier	MODERN SPECIES	7074														COCH (ENSTSYG00000000628) #20	STRN3 (ENSTSYG00000000630) #21	AP4S1 (ENSTSYG00000009655) #22	HECTD1 (ENSTSYG00000009661) #23	ENSTSYG00000035488	ENSTSYG00000006884 #24	ENSTSYG00000029203
Simiiformes	ANCESTRAL SPECIES	2	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00940000167604	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Hominoidea	ANCESTRAL SPECIES	12	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00390000010721.a.a.a.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Gibbon	MODERN SPECIES	14	SDR39U1 (ENSNLEG00000015526)	CMA1 (ENSNLEG00000015539)	CTSG (ENSNLEG00000035806)	GZMH (ENSNLEG00000015576)	ENSNLEG00000015562	STXBP6 (ENSNLEG00000031616) #13	ENSNLEG00000034166	NOVA1 (ENSNLEG00000033958) #14	PRKD1 (ENSNLEG00000015603) #17	G2E3 (ENSNLEG00000015614) #18	ENSNLEG00000031681	SCFD1 (ENSNLEG00000015659) #19	ENSNLEG00000028472	COCH (ENSNLEG00000015841) #20	STRN3 (ENSNLEG00000015856) #21	ENSNLEG00000015901 #22	HECTD1 (ENSNLEG00000015912) #23	HEATR5A (ENSNLEG00000015975) #24	ENSNLEG00000027180	ACOT4 (ENSNLEG00000016052)	ENSNLEG00000030750	DNAL1 (ENSNLEG00000016062)	PNMA1 (ENSNLEG00000016068)	ENSNLEG00000033162	MIDEAS (ENSNLEG00000016069)	PTGR2 (ENSNLEG00000016076)	ZNF410 (ENSNLEG00000016090)	FAM161B (ENSNLEG00000016114)	COQ6 (ENSNLEG00000016122)	ENTPD5 (ENSNLEG00000016159)	BBOF1 (ENSNLEG00000016175)
Hominidae	ANCESTRAL SPECIES	14	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00390000010721.a.a.a.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Orangutan	MODERN SPECIES	5	CBLN3 (ENSPPYG00000005706)	KHNYN (ENSPPYG00000005708)	SDR39U1 (ENSPPYG00000031348)	CMA1 (ENSPPYG00000005709)	CTSG (ENSPPYG00000005710)	GZMH (ENSPPYG00000005711)	GZMB (ENSPPYG00000005712)	STXBP6 (ENSPPYG00000005713) #13	NOVA1 (ENSPPYG00000031227) #14	ENSPPYG00000030410	PRKD1 (ENSPPYG00000005718) #17	G2E3 (ENSPPYG00000005719) #18	SCFD1 (ENSPPYG00000005720) #19	COCH (ENSPPYG00000005721) #20	STRN3 (ENSPPYG00000005722) #21	ENSPPYG00000005723 #22	HECTD1 (ENSPPYG00000005724) #23	HEATR5A (ENSPPYG00000005725) #24	DTD2 (ENSPPYG00000036770) #25	NUBPL (ENSPPYG00000005727) #27	ARHGAP5 (ENSPPYG00000005729) #28	AKAP6 (ENSPPYG00000005730) #29	NPAS3 (ENSPPYG00000005731) #30	EGLN3 (ENSPPYG00000005732) #31	SPTSSA (ENSPPYG00000005733) #32	EAPP (ENSPPYG00000005735) #33	SNX6 (ENSPPYG00000005736) #34	CFL2 (ENSPPYG00000005737) #35	BAZ1A (ENSPPYG00000005738) #36	SRP54 (ENSPPYG00000005739)	FAM177A1 (ENSPPYG00000005740)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	12	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00390000010721.a.a.a.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Gorilla	MODERN SPECIES	5	CTSG (ENSGGOG00000013780)	GZMH (ENSGGOG00000012428)	GZMB (ENSGGOG00000012986)	STXBP6 (ENSGGOG00000005321) #13	ENSGGOG00000038355	NOVA1 (ENSGGOG00000016495) #14	ENSGGOG00000009355	PRKD1 (ENSGGOG00000011852) #17	G2E3 (ENSGGOG00000001924) #18	ENSGGOG00000036427	SCFD1 (ENSGGOG00000011007) #19	ENSGGOG00000024446	COCH (ENSGGOG00000025198) #20	ENSGGOG00000042724	STRN3 (ENSGGOG00000006096) #21	ENSGGOG00000003198 #22	HECTD1 (ENSGGOG00000026552) #23	HEATR5A (ENSGGOG00000000655) #24	DTD2 (ENSGGOG00000043676) #25	GPR33 (ENSGGOG00000026905) #26	NUBPL (ENSGGOG00000009764) #27	ARHGAP5 (ENSGGOG00000002593) #28	ENSGGOG00000042101	AKAP6 (ENSGGOG00000025608) #29	ENSGGOG00000041161	ENSGGOG00000022941 #30	ENSGGOG00000037716	EGLN3 (ENSGGOG00000014900) #31	EAPP (ENSGGOG00000007784) #33	SNX6 (ENSGGOG00000007659) #34	CFL2 (ENSGGOG00000038032) #35
Homo/Pan group	ANCESTRAL SPECIES	11	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00390000010721.a.a.a.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b.e #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35
Human	MODERN SPECIES	5	CBLN3 (ENSG00000139899)	KHNYN (ENSG00000100441)	SDR39U1 (ENSG00000100445)	CMA1 (ENSG00000092009)	CTSG (ENSG00000100448)	GZMH (ENSG00000100450)	GZMB (ENSG00000100453)	STXBP6 (ENSG00000168952) #13	NOVA1 (ENSG00000139910) #14	FOXG1 (ENSG00000176165) #16	PRKD1 (ENSG00000184304) #17	G2E3 (ENSG00000092140) #18	SCFD1 (ENSG00000092108) #19	COCH (ENSG00000100473) #20	STRN3 (ENSG00000196792) #21	AP4S1 (ENSG00000100478) #22	HECTD1 (ENSG00000092148) #23	HEATR5A (ENSG00000129493) #24	ENSG00000203546	DTD2 (ENSG00000129480) #25	GPR33 (ENSG00000214943) #26	NUBPL (ENSG00000151413) #27	ARHGAP5 (ENSG00000100852) #28	AKAP6 (ENSG00000151320) #29	NPAS3 (ENSG00000151322) #30	EGLN3 (ENSG00000129521) #31	SPTSSA (ENSG00000165389) #32	EAPP (ENSG00000129518) #33	SNX6 (ENSG00000129515) #34	CFL2 (ENSG00000165410) #35	BAZ1A (ENSG00000198604) #36
Pan	ANCESTRAL SPECIES	8	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00390000010721.a.a.a.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b.e #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35
Bonobo	MODERN SPECIES	5	CTSG (ENSPPAG00000012631)	GZMH (ENSPPAG00000036072)	GZMB (ENSPPAG00000041223)	ENSPPAG00000029794 #13	ENSPPAG00000033264	NOVA1 (ENSPPAG00000038980) #14	ENSPPAG00000016025 #16	ENSPPAG00000040567	PRKD1 (ENSPPAG00000037023) #17	G2E3 (ENSPPAG00000028644) #18	SCFD1 (ENSPPAG00000042546) #19	ENSPPAG00000037740	ENSPPAG00000038553	COCH (ENSPPAG00000042223) #20	STRN3 (ENSPPAG00000028044) #21	ENSPPAG00000041450 #22	HECTD1 (ENSPPAG00000036559) #23	HEATR5A (ENSPPAG00000034508) #24	DTD2 (ENSPPAG00000029393) #25	GPR33 (ENSPPAG00000016765) #26	ENSPPAG00000033459	ENSPPAG00000034553 #27	ARHGAP5 (ENSPPAG00000037127) #28	AKAP6 (ENSPPAG00000036668) #29	NPAS3 (ENSPPAG00000028096) #30	ENSPPAG00000004989	EGLN3 (ENSPPAG00000018135) #31	EAPP (ENSPPAG00000030095) #33	SNX6 (ENSPPAG00000037141) #34	CFL2 (ENSPPAG00000007558) #35	ENSPPAG00000008100
Chimpanzee	MODERN SPECIES	5	CMA1 (ENSPTRG00000006223)	CTSG (ENSPTRG00000006224)	GZMB (ENSPTRG00000006226)	STXBP6 (ENSPTRG00000006227) #13	ENSPTRG00000052577	NOVA1 (ENSPTRG00000006229) #14	FOXG1 (ENSPTRG00000030783) #16	ENSPTRG00000006231	PRKD1 (ENSPTRG00000006232) #17	G2E3 (ENSPTRG00000006234) #18	SCFD1 (ENSPTRG00000006235) #19	ENSPTRG00000052239	ENSPTRG00000047778	COCH (ENSPTRG00000006237) #20	STRN3 (ENSPTRG00000006238) #21	AP4S1 (ENSPTRG00000006239) #22	HECTD1 (ENSPTRG00000006240) #23	HEATR5A (ENSPTRG00000006241) #24	DTD2 (ENSPTRG00000006244) #25	GPR33 (ENSPTRG00000032557) #26	NUBPL (ENSPTRG00000006245) #27	ARHGAP5 (ENSPTRG00000006246) #28	AKAP6 (ENSPTRG00000006247) #29	NPAS3 (ENSPTRG00000006249) #30	ENSPTRG00000043856	EGLN3 (ENSPTRG00000006250) #31	SPTSSA (ENSPTRG00000006251) #32	EAPP (ENSPTRG00000006252) #33	SNX6 (ENSPTRG00000006253) #34	CFL2 (ENSPTRG00000006254) #35	ENSPTRG00000051817
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Cercopithecinae	DUPLICATION
Cercopithecinae	DUPLICATION
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000012242	ENSGT01010000222360.D.b.o.a.a	ENSGT00950000183034.C	ENSGT01030000234513.A.a.b	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00900000143774	ENSGT00390000004211	ENSGT01060000248564.a.a	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00910000147078	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000159115.p	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT00940000153314.a.b.a.k	ENSGT01090000260070.D
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT01010000222360.D.b.o.a.a	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00900000143774	ENSGT00390000004211	ENSGT01060000248564.a.a	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00910000147078	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000159115.p	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT01090000260070.D	ENSGT00940000158228.a
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000011103.B.j	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00900000143774	ENSGT00390000004211	ENSGT01060000248564.a.a	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00910000147078	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT01090000260070.D	ENSGT00940000158228.a	ENSGT00940000157785
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00390000011103.B.j	ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a.a.b.a	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00390000004211	ENSGT01060000248564.a.a	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT01090000260070.D	ENSGT00940000158228.a	ENSGT00940000157785	ENSGT00940000160189
Crab-eating macaque	MODERN SPECIES	14	CGA (ENSMFAG00000037707)	ZNF292 (ENSMFAG00000045756)	SMIM8 (ENSMFAG00000000775)	ENSMFAG00000053614	C6orf163 (ENSMFAG00000045620)	CFAP206 (ENSMFAG00000035889)	ENSMFAG00000056350	SLC35A1 (ENSMFAG00000001045)	RARS2 (ENSMFAG00000039420)	ENSMFAG00000060786	ORC3 (ENSMFAG00000041907)	AKIRIN2 (ENSMFAG00000023644)	SPACA1 (ENSMFAG00000046308)	CNR1 (ENSMFAG00000040164)	RNGTT (ENSMFAG00000030988)	ENSMFAG00000031569 #22	PNRC1 (ENSMFAG00000046306)	ENSMFAG00000054442	ENSMFAG00000059889	SRSF12 (ENSMFAG00000048779)	GABRR2 (ENSMFAG00000043423)	UBE2J1 (ENSMFAG00000046333)	RRAGD (ENSMFAG00000038149)	ANKRD6 (ENSMFAG00000034278)	LYRM2 (ENSMFAG00000055976)	MDN1 (ENSMFAG00000041968)	CASP8AP2 (ENSMFAG00000036833)	GJA10 (ENSMFAG00000035012)	ENSMFAG00000060642	BACH2 (ENSMFAG00000040061)	MAP3K7 (ENSMFAG00000035469)
Pig-tailed macaque	MODERN SPECIES	79	ENSMNEG00000037112	HTR1E (ENSMNEG00000004973)	CGA (ENSMNEG00000045132)	ZNF292 (ENSMNEG00000043433)	SMIM8 (ENSMNEG00000042949)	C6orf163 (ENSMNEG00000045491)	CFAP206 (ENSMNEG00000029408)	SLC35A1 (ENSMNEG00000038937)	RARS2 (ENSMNEG00000043383)	ORC3 (ENSMNEG00000030771)	AKIRIN2 (ENSMNEG00000040114)	ENSMNEG00000045243	SPACA1 (ENSMNEG00000040936)	ENSMNEG00000023905	RNGTT (ENSMNEG00000040764)	ENSMNEG00000035079 #22	ENSMNEG00000000951	ENSMNEG00000002598	SRSF12 (ENSMNEG00000030957)	PM20D2 (ENSMNEG00000037852)	GABRR1 (ENSMNEG00000016603)	GABRR2 (ENSMNEG00000030830)	UBE2J1 (ENSMNEG00000028213)	RRAGD (ENSMNEG00000033828)	ANKRD6 (ENSMNEG00000043528)	ENSMNEG00000035722	MDN1 (ENSMNEG00000042497)	CASP8AP2 (ENSMNEG00000041673)	GJA10 (ENSMNEG00000011947)	BACH2 (ENSMNEG00000038521)	MAP3K7 (ENSMNEG00000039436)
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00390000008099.w.a.a	ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT01010000222360.D.b.o.a.a	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036.fb	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00390000004211	ENSGT01060000248564.a.a	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000159115.p	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT00940000153314.a.b.a.k	ENSGT01090000260070.D	ENSGT00940000158228.a
Cercopithecinae_d	ANCESTRAL SPECIES	35			ENSGT01010000222287.B.b.a.a.b	ENSGT00390000012242	ENSGT01010000222360.D.b.o.a.a	ENSGT00950000183034.C	ENSGT00390000011674	ENSGT00390000010837	ENSGT00390000016036.fb	ENSGT00950000182827.E	ENSGT00530000063407.a	ENSGT00390000011376.e.a	ENSGT00940000156096	ENSGT00390000004211	ENSGT00940000156953	ENSGT00970000193421.B.w.a #22	ENSGT00530000063881.a.a	ENSGT00940000160519	ENSGT00390000003365	ENSGT00940000158591	ENSGT00940000159115.p	ENSGT00940000156864	ENSGT00940000156652	ENSGT00950000183031.A.a.b	ENSGT00940000155887	ENSGT00390000002957	ENSGT00550000074802	ENSGT00620000088063	ENSGT00940000153314.a.b.a.k	ENSGT01090000260070.D	ENSGT00940000158228.a
Sooty mangabey	MODERN SPECIES	139			HTR1E (ENSCATG00000020218)	CGA (ENSCATG00000041749)	ENSCATG00000041508	ZNF292 (ENSCATG00000034148)	SMIM8 (ENSCATG00000033189)	C6orf163 (ENSCATG00000032899)	CFAP206 (ENSCATG00000040165)	SLC35A1 (ENSCATG00000034961)	RARS2 (ENSCATG00000023833)	ORC3 (ENSCATG00000043319)	AKIRIN2 (ENSCATG00000040852)	SPACA1 (ENSCATG00000038646)	RNGTT (ENSCATG00000045048)	ENSCATG00000044563 #22	PNRC1 (ENSCATG00000042984)	SRSF12 (ENSCATG00000030620)	PM20D2 (ENSCATG00000028215)	GABRR1 (ENSCATG00000044484)	ENSCATG00000043258	GABRR2 (ENSCATG00000041117)	UBE2J1 (ENSCATG00000039458)	RRAGD (ENSCATG00000017528)	ANKRD6 (ENSCATG00000034920)	LYRM2 (ENSCATG00000038992)	MDN1 (ENSCATG00000045011)	CASP8AP2 (ENSCATG00000014543)	GJA10 (ENSCATG00000005843)	BACH2 (ENSCATG00000037186)	ENSCATG00000033625
Vervet Monkey	MODERN SPECIES	4	CGA (ENSCSAG00000017361)	ZNF292 (ENSCSAG00000017359)	GJB7 (ENSCSAG00000000195)	SMIM8 (ENSCSAG00000017356)	C6orf163 (ENSCSAG00000017354)	ENSCSAG00000017350	CFAP206 (ENSCSAG00000017348)	SLC35A1 (ENSCSAG00000017346)	RARS2 (ENSCSAG00000017345)	ORC3 (ENSCSAG00000017343)	AKIRIN2 (ENSCSAG00000017340)	SPACA1 (ENSCSAG00000017335)	CNR1 (ENSCSAG00000000194)	RNGTT (ENSCSAG00000017333)	ENSCSAG00000017330	ENSCSAG00000000193 #22	PNRC1 (ENSCSAG00000017327)	SRSF12 (ENSCSAG00000017325)	PM20D2 (ENSCSAG00000017322)	GABRR1 (ENSCSAG00000017318)	GABRR2 (ENSCSAG00000017310)	UBE2J1 (ENSCSAG00000017306)	RRAGD (ENSCSAG00000017302)	ANKRD6 (ENSCSAG00000017299)	LYRM2 (ENSCSAG00000017297)	ENSCSAG00000017292	ENSCSAG00000017283	ENSCSAG00000017279	CASP8AP2 (ENSCSAG00000017276)	GJA10 (ENSCSAG00000000192)	BACH2 (ENSCSAG00000017273)
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00970000193421.B.w.b #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00970000193421.B.w.b #22
Macaca	ANCESTRAL SPECIES																	ENSGT00970000193421.B.w.b #22
Pig-tailed macaque	MODERN SPECIES	548	CMA1 (ENSMNEG00000037233)	CTSG (ENSMNEG00000033836)	GZMB (ENSMNEG00000030038)	STXBP6 (ENSMNEG00000035846) #13	ENSMNEG00000028242	NOVA1 (ENSMNEG00000040302) #14	ENSMNEG00000031451	ENSMNEG00000003788	ENSMNEG00000043357	PRKD1 (ENSMNEG00000015251) #17	G2E3 (ENSMNEG00000033498) #18	SCFD1 (ENSMNEG00000035218) #19	ENSMNEG00000041776	COCH (ENSMNEG00000031522) #20	STRN3 (ENSMNEG00000032023) #21	ENSMNEG00000040344 #22	HECTD1 (ENSMNEG00000001350) #23	HEATR5A (ENSMNEG00000034513) #24	DTD2 (ENSMNEG00000045027) #25	NUBPL (ENSMNEG00000031679) #27	ENSMNEG00000027078	ARHGAP5 (ENSMNEG00000044390) #28	ENSMNEG00000011661	AKAP6 (ENSMNEG00000039858) #29	NPAS3 (ENSMNEG00000034614) #30	ENSMNEG00000019306	EGLN3 (ENSMNEG00000034405) #31	SPTSSA (ENSMNEG00000041970) #32	EAPP (ENSMNEG00000034819) #33	SNX6 (ENSMNEG00000044189) #34	CFL2 (ENSMNEG00000039241) #35
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00390000011740.o.a.b	ENSGT00940000154466.rb.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Macaca	ANCESTRAL SPECIES	1	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00390000011740.o.a.b	ENSGT00940000154466.rb.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01050000248456	ENSGT00940000155573 #14	ENSGT00940000154466.rb.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b.e #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.a.b.b.b	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35
Rhesus	MODERN SPECIES	17	GZMB (ENSMMUG00000014381)	STXBP6 (ENSMMUG00000015442) #13	ENSMMUG00000050036	ENSMMUG00000055618	NOVA1 (ENSMMUG00000004271) #14	FOXG1 (ENSMMUG00000021444) #16	ENSMMUG00000038390	PRKD1 (ENSMMUG00000022550) #17	ENSMMUG00000062130	ENSMMUG00000062346	ENSMMUG00000064617	G2E3 (ENSMMUG00000019691) #18	SCFD1 (ENSMMUG00000019692) #19	COCH (ENSMMUG00000011514) #20	STRN3 (ENSMMUG00000011515) #21	AP4S1 (ENSMMUG00000003123) #22	HECTD1 (ENSMMUG00000003120) #23	HEATR5A (ENSMMUG00000011779) #24	DTD2 (ENSMMUG00000050472) #25	GPR33 (ENSMMUG00000015703) #26	NUBPL (ENSMMUG00000012726) #27	ENSMMUG00000054094	ENSMMUG00000056320	ARHGAP5 (ENSMMUG00000016346) #28	AKAP6 (ENSMMUG00000015128) #29	ENSMMUG00000062990	NPAS3 (ENSMMUG00000014839) #30	ENSMMUG00000054677	EGLN3 (ENSMMUG00000000040) #31	ENSMMUG00000064654	ENSMMUG00000057166
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000052065	ENSMFAG00000058625	ENSMFAG00000061901	NOVA1 (ENSMFAG00000035425) #14	ENSMFAG00000031652	ENSMFAG00000060602	ENSMFAG00000048178	ENSMFAG00000061081	FOXG1 (ENSMFAG00000000544) #16	ENSMFAG00000033313	PRKD1 (ENSMFAG00000039957) #17	G2E3 (ENSMFAG00000033929) #18	SCFD1 (ENSMFAG00000039675) #19	COCH (ENSMFAG00000043586) #20	STRN3 (ENSMFAG00000030208) #21	ENSMFAG00000032637 #22	HECTD1 (ENSMFAG00000038044) #23	HEATR5A (ENSMFAG00000031414) #24	DTD2 (ENSMFAG00000044459) #25	GPR33 (ENSMFAG00000038012) #26	ENSMFAG00000062632	ENSMFAG00000054026	NUBPL (ENSMFAG00000038751) #27	ARHGAP5 (ENSMFAG00000000350) #28	AKAP6 (ENSMFAG00000040818) #29	ENSMFAG00000000440	NPAS3 (ENSMFAG00000043431) #30	ENSMFAG00000057891	EGLN3 (ENSMFAG00000036942) #31	ENSMFAG00000058983	SPTSSA (ENSMFAG00000048755) #32
Cercopithecinae_b	DUPLICATION
Cercopithecinae_b	DUPLICATION
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00970000193421.B.x.a.a #22
Olive baboon	MODERN SPECIES	16	ENSPANG00000050985	HTR1E (ENSPANG00000005474)	ENSPANG00000039493	ZNF292 (ENSPANG00000007401)	ENSPANG00000020538	C6orf163 (ENSPANG00000006405)	CFAP206 (ENSPANG00000024964)	SLC35A1 (ENSPANG00000011579)	RARS2 (ENSPANG00000000663)	ORC3 (ENSPANG00000001079)	AKIRIN2 (ENSPANG00000020357)	ENSPANG00000039569	SPACA1 (ENSPANG00000023127)	CNR1 (ENSPANG00000018644)	RNGTT (ENSPANG00000010454)	ENSPANG00000013953 #22	PM20D2 (ENSPANG00000020356)	SRSF12 (ENSPANG00000016731)	GABRR1 (ENSPANG00000020411)	GABRR2 (ENSPANG00000010453)	UBE2J1 (ENSPANG00000016471)	RRAGD (ENSPANG00000021498)	ANKRD6 (ENSPANG00000017857)	LYRM2 (ENSPANG00000024769)	MDN1 (ENSPANG00000033473)	CASP8AP2 (ENSPANG00000016264)	GJA10 (ENSPANG00000011128)	BACH2 (ENSPANG00000006817)	MAP3K7 (ENSPANG00000021959)	ENSPANG00000045484	ENSPANG00000050211
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00970000193421.B.x.a.a #22
Drill	MODERN SPECIES	896									CFAP206 (ENSMLEG00000030746)	SLC35A1 (ENSMLEG00000038798)	RARS2 (ENSMLEG00000036913)	ORC3 (ENSMLEG00000031406)	AKIRIN2 (ENSMLEG00000042845)	SPACA1 (ENSMLEG00000000535)	RNGTT (ENSMLEG00000036501)	ENSMLEG00000025014 #22	PNRC1 (ENSMLEG00000035351)	SRSF12 (ENSMLEG00000042204)	PM20D2 (ENSMLEG00000034819)	GABRR1 (ENSMLEG00000037111)	ENSMLEG00000036657	GABRR2 (ENSMLEG00000035249)	UBE2J1 (ENSMLEG00000033818)	RRAGD (ENSMLEG00000002405)	ANKRD6 (ENSMLEG00000035340)	LYRM2 (ENSMLEG00000033284)	MDN1 (ENSMLEG00000042713)	CASP8AP2 (ENSMLEG00000040162)	ENSMLEG00000031189	GJA10 (ENSMLEG00000032578)	BACH2 (ENSMLEG00000043165)
Cercopithecinae_b	ANCESTRAL SPECIES																	ENSGT00970000193421.B.x.a.b #22
Cercopithecinae_d	ANCESTRAL SPECIES																	ENSGT00970000193421.B.x.a.b #22
Drill	MODERN SPECIES	1147									ENSMLEG00000033922	PRKD1 (ENSMLEG00000038538) #17	G2E3 (ENSMLEG00000000130) #18	ENSMLEG00000040005	SCFD1 (ENSMLEG00000040452) #19	COCH (ENSMLEG00000041242) #20	STRN3 (ENSMLEG00000002796) #21	ENSMLEG00000027407 #22	HECTD1 (ENSMLEG00000037269) #23	HEATR5A (ENSMLEG00000021879) #24	DTD2 (ENSMLEG00000000901) #25
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00390000011740.o.a.b	ENSGT00940000154466.rb.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x.b #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.pb #34
Cercopithecinae_d	ANCESTRAL SPECIES	101	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00390000011740.o.a.b	ENSGT00940000154466.rb.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.x.b #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00910000147374	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Sooty mangabey	MODERN SPECIES	186			ENSCATG00000036166	ENSCATG00000016038	FOXG1 (ENSCATG00000017354) #16	ENSCATG00000039455	ENSCATG00000035671	PRKD1 (ENSCATG00000007883) #17	ENSCATG00000022351	G2E3 (ENSCATG00000030515) #18	ENSCATG00000013950	SCFD1 (ENSCATG00000036581) #19	COCH (ENSCATG00000007110) #20	ENSCATG00000029724	STRN3 (ENSCATG00000022375) #21	ENSCATG00000035780 #22	HECTD1 (ENSCATG00000032933) #23	HEATR5A (ENSCATG00000032282) #24	DTD2 (ENSCATG00000031883) #25	NUBPL (ENSCATG00000033880) #27	ENSCATG00000015897	ARHGAP5 (ENSCATG00000035037) #28	ENSCATG00000018768	AKAP6 (ENSCATG00000037210) #29	NPAS3 (ENSCATG00000029945) #30	ENSCATG00000043412	EGLN3 (ENSCATG00000040041) #31	ENSCATG00000030363	SPTSSA (ENSCATG00000029208) #32	EAPP (ENSCATG00000044341) #33
Olive baboon	MODERN SPECIES	17	GZMB (ENSPANG00000023854)	ENSPANG00000023856 #13	ENSPANG00000040110	ENSPANG00000039253	NOVA1 (ENSPANG00000004891) #14	ENSPANG00000041818	FOXG1 (ENSPANG00000020365) #16	ENSPANG00000020459	ENSPANG00000047513	PRKD1 (ENSPANG00000009943) #17	G2E3 (ENSPANG00000015300) #18	SCFD1 (ENSPANG00000016614) #19	ENSPANG00000038938	COCH (ENSPANG00000011160) #20	STRN3 (ENSPANG00000020458) #21	ENSPANG00000017427 #22	HECTD1 (ENSPANG00000017149) #23	HEATR5A (ENSPANG00000000801) #24	DTD2 (ENSPANG00000021336) #25	GPR33 (ENSPANG00000021666) #26	NUBPL (ENSPANG00000021781) #27	ENSPANG00000047627	ARHGAP5 (ENSPANG00000024272) #28	ENSPANG00000038472	ENSPANG00000038010	AKAP6 (ENSPANG00000022397) #29	NPAS3 (ENSPANG00000021333) #30	EGLN3 (ENSPANG00000047484) #31	ENSPANG00000039055	SPTSSA (ENSPANG00000044993) #32	EAPP (ENSPANG00000018424) #33
Rhinopithecus	ANCESTRAL SPECIES	225				ENSGT00940000155573 #14	ENSGT00390000011740.o.a.b	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00930000150950.b.m.a	ENSGT00950000183024.a.b.a #17	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00930000150941.x.b.a	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b.e #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	554															RNGTT (ENSRBIG00000031371)	ENSRBIG00000039603 #22	ENSRBIG00000033270	ENSRBIG00000015851	SRSF12 (ENSRBIG00000029756)	PM20D2 (ENSRBIG00000028170)	GABRR1 (ENSRBIG00000033754)	ENSRBIG00000029173	GABRR2 (ENSRBIG00000033560)	UBE2J1 (ENSRBIG00000040894)	RRAGD (ENSRBIG00000035825)	ENSRBIG00000031594	ANKRD6 (ENSRBIG00000040932)	LYRM2 (ENSRBIG00000038797)	MDN1 (ENSRBIG00000026947)	CASP8AP2 (ENSRBIG00000017037)	ENSRBIG00000037272
Black snub-nosed monkey	MODERN SPECIES	1258				NOVA1 (ENSRBIG00000026331) #14	ENSRBIG00000043316	FOXG1 (ENSRBIG00000023959) #16	ENSRBIG00000031563	ENSRBIG00000023096	PRKD1 (ENSRBIG00000023650) #17	ENSRBIG00000044315	ENSRBIG00000021976	G2E3 (ENSRBIG00000038648) #18	SCFD1 (ENSRBIG00000035795) #19	COCH (ENSRBIG00000024567) #20	STRN3 (ENSRBIG00000034106) #21	ENSRBIG00000031706 #22	HECTD1 (ENSRBIG00000014027) #23	HEATR5A (ENSRBIG00000035494) #24	DTD2 (ENSRBIG00000031412) #25	NUBPL (ENSRBIG00000033232) #27	ENSRBIG00000038307	ARHGAP5 (ENSRBIG00000016020) #28	AKAP6 (ENSRBIG00000038045) #29	ENSRBIG00000032788	NPAS3 (ENSRBIG00000032686) #30	ENSRBIG00000019858	EGLN3 (ENSRBIG00000039961) #31	SPTSSA (ENSRBIG00000039846) #32	EAPP (ENSRBIG00000044230) #33
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3216														RNGTT (ENSRROG00000030932)	ENSRROG00000025341	ENSRROG00000028750 #22	ENSRROG00000037633	ENSRROG00000012648	SRSF12 (ENSRROG00000035967)	PM20D2 (ENSRROG00000029139)	GABRR1 (ENSRROG00000031005)	ENSRROG00000039270	GABRR2 (ENSRROG00000036077)	UBE2J1 (ENSRROG00000044687)	RRAGD (ENSRROG00000041534)	ENSRROG00000027171	ENSRROG00000022559	ANKRD6 (ENSRROG00000043779)	LYRM2 (ENSRROG00000005389)	MDN1 (ENSRROG00000026180)	CASP8AP2 (ENSRROG00000033739)
Golden snub-nosed monkey	MODERN SPECIES	1802					ENSRROG00000026815 #16	ENSRROG00000040454	ENSRROG00000042434	PRKD1 (ENSRROG00000031270) #17	ENSRROG00000016372	G2E3 (ENSRROG00000040994) #18	ENSRROG00000034261	SCFD1 (ENSRROG00000033120) #19	COCH (ENSRROG00000032576) #20	ENSRROG00000039999	STRN3 (ENSRROG00000044804) #21	ENSRROG00000019504 #22	HECTD1 (ENSRROG00000014728) #23	HEATR5A (ENSRROG00000035401) #24	DTD2 (ENSRROG00000033463) #25	NUBPL (ENSRROG00000045260) #27	ENSRROG00000040570	ENSRROG00000040701	ARHGAP5 (ENSRROG00000043273) #28
Platyrrhini	ANCESTRAL SPECIES	4	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT01030000234574.B.c.b.b.h	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00940000167604	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.l #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35
Mas night monkey	MODERN SPECIES	819	KHNYN (ENSANAG00000023698)	SDR39U1 (ENSANAG00000026864)	CMA1 (ENSANAG00000028506)	CTSG (ENSANAG00000025418)	GZMH (ENSANAG00000022041)	GZMB (ENSANAG00000032891)	STXBP6 (ENSANAG00000025116) #13	ENSANAG00000034584	NOVA1 (ENSANAG00000028004) #14	ENSANAG00000028865	PRKD1 (ENSANAG00000032943) #17	G2E3 (ENSANAG00000024605) #18	SCFD1 (ENSANAG00000025849) #19	COCH (ENSANAG00000029746) #20	STRN3 (ENSANAG00000026168) #21	AP4S1 (ENSANAG00000026444) #22	HECTD1 (ENSANAG00000037367) #23	ENSANAG00000035920 #24	ENSANAG00000033419	DTD2 (ENSANAG00000036862) #25	NUBPL (ENSANAG00000036864) #27	ARHGAP5 (ENSANAG00000037055) #28	AKAP6 (ENSANAG00000034900) #29	ENSANAG00000020942	NPAS3 (ENSANAG00000023028) #30	ENSANAG00000020399	EGLN3 (ENSANAG00000037222) #31	ENSANAG00000024247	ENSANAG00000021068 #33	ENSANAG00000030653	SNX6 (ENSANAG00000019855) #34
Cebidae	ANCESTRAL SPECIES	3	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.l #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35
Cebidae_a	ANCESTRAL SPECIES	4	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT01030000234542.b.a.a.b.a.b.k.b	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.k.a #33	ENSGT00940000154940.pb #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Capuchin	MODERN SPECIES	104								NOVA1 (ENSCCAG00000026410) #14	FOXG1 (ENSCCAG00000020029) #16	ENSCCAG00000027095	PRKD1 (ENSCCAG00000035438) #17	G2E3 (ENSCCAG00000035971) #18	SCFD1 (ENSCCAG00000032443) #19	COCH (ENSCCAG00000024866) #20	STRN3 (ENSCCAG00000011456) #21	AP4S1 (ENSCCAG00000021787) #22	HECTD1 (ENSCCAG00000012275) #23	HEATR5A (ENSCCAG00000031936) #24	CASP7 (ENSCCAG00000022261)	PLEKHS1 (ENSCCAG00000035291)	ENSCCAG00000028782	NHLRC2 (ENSCCAG00000025322)	CCDC186 (ENSCCAG00000023942)	TDRD1 (ENSCCAG00000027375)
Bolivian squirrel monkey	MODERN SPECIES	52	CTSG (ENSSBOG00000030717)	ENSSBOG00000019753	GZMH (ENSSBOG00000026395)	GZMB (ENSSBOG00000016642)	STXBP6 (ENSSBOG00000022536) #13	ENSSBOG00000033503	NOVA1 (ENSSBOG00000034029) #14	ENSSBOG00000029497	ENSSBOG00000009503 #16	ENSSBOG00000034922	PRKD1 (ENSSBOG00000035413) #17	G2E3 (ENSSBOG00000028363) #18	SCFD1 (ENSSBOG00000031363) #19	COCH (ENSSBOG00000011793) #20	STRN3 (ENSSBOG00000023010) #21	AP4S1 (ENSSBOG00000026649) #22	HECTD1 (ENSSBOG00000026436) #23	ENSSBOG00000033123	HEATR5A (ENSSBOG00000032305) #24	DTD2 (ENSSBOG00000027444) #25	NUBPL (ENSSBOG00000033649) #27	ARHGAP5 (ENSSBOG00000025460) #28	AKAP6 (ENSSBOG00000021858) #29	NPAS3 (ENSSBOG00000021474) #30	EGLN3 (ENSSBOG00000032045) #31	ENSSBOG00000035596	SPTSSA (ENSSBOG00000035589) #32	ENSSBOG00000033003	SNX6 (ENSSBOG00000022890) #34	CFL2 (ENSSBOG00000014011) #35	BAZ1A (ENSSBOG00000028821) #36
Marmoset	MODERN SPECIES	1	CMA1 (ENSCJAG00000006344)	CTSG (ENSCJAG00000006323)	GZMH (ENSCJAG00000006314)	GZMB (ENSCJAG00000006291)	STXBP6 (ENSCJAG00000045104) #13	ENSCJAG00000069808	NOVA1 (ENSCJAG00000039497) #14	ENSCJAG00000022035	FOXG1 (ENSCJAG00000006213) #16	PRKD1 (ENSCJAG00000006180) #17	G2E3 (ENSCJAG00000006106) #18	SCFD1 (ENSCJAG00000005938) #19	COCH (ENSCJAG00000005886) #20	STRN3 (ENSCJAG00000005822) #21	ENSCJAG00000071091	AP4S1 (ENSCJAG00000005786) #22	HECTD1 (ENSCJAG00000005631) #23	ENSCJAG00000073672	HEATR5A (ENSCJAG00000005593) #24	ENSCJAG00000075200	DTD2 (ENSCJAG00000073851) #25	GPR33 (ENSCJAG00000035428) #26	NUBPL (ENSCJAG00000005582) #27	ARHGAP5 (ENSCJAG00000005538) #28	AKAP6 (ENSCJAG00000005474) #29	NPAS3 (ENSCJAG00000047425) #30	EGLN3 (ENSCJAG00000005424) #31	SPTSSA (ENSCJAG00000086959) #32	ENSCJAG00000032302	EAPP (ENSCJAG00000042239) #33	SNX6 (ENSCJAG00000044761) #34
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Bushbaby	MODERN SPECIES	167								STXBP6 (ENSOGAG00000011211) #13	NOVA1 (ENSOGAG00000025938) #14	FOXG1 (ENSOGAG00000029149) #16	PRKD1 (ENSOGAG00000002966) #17	G2E3 (ENSOGAG00000017094) #18	SCFD1 (ENSOGAG00000017096) #19	COCH (ENSOGAG00000004695) #20	STRN3 (ENSOGAG00000004698) #21	AP4S1 (ENSOGAG00000004703) #22	HEATR5A (ENSOGAG00000013052) #24	DTD2 (ENSOGAG00000013060) #25	NUBPL (ENSOGAG00000011550) #27	ARHGAP5 (ENSOGAG00000029734) #28	AKAP6 (ENSOGAG00000001808) #29	NPAS3 (ENSOGAG00000014886) #30	EGLN3 (ENSOGAG00000014893) #31	ENSOGAG00000001254	SPTSSA (ENSOGAG00000030285) #32	EAPP (ENSOGAG00000012492) #33	SNX6 (ENSOGAG00000008020) #34	CFL2 (ENSOGAG00000032321) #35	BAZ1A (ENSOGAG00000002234) #36	ENSOGAG00000031729	SRP54 (ENSOGAG00000012188)
Lemuriformes	ANCESTRAL SPECIES	8	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.l	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.k	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Mouse lemur	MODERN SPECIES	22	CMA1 (ENSMICG00000014279)	ENSMICG00000045482	CTSG (ENSMICG00000030692)	MYH6 (ENSMICG00000045811)	DHRS2 (ENSMICG00000044785)	ENSMICG00000010090	ENSMICG00000027192	ENSMICG00000017194	STXBP6 (ENSMICG00000035834) #13	NOVA1 (ENSMICG00000034677) #14	PRKD1 (ENSMICG00000001016) #17	G2E3 (ENSMICG00000014597) #18	SCFD1 (ENSMICG00000004149) #19	COCH (ENSMICG00000003344) #20	STRN3 (ENSMICG00000026845) #21	AP4S1 (ENSMICG00000003359) #22	HECTD1 (ENSMICG00000034057) #23	HEATR5A (ENSMICG00000007619) #24	DTD2 (ENSMICG00000030584) #25	ENSMICG00000027167	NUBPL (ENSMICG00000034340) #27	ARHGAP5 (ENSMICG00000007275) #28	AKAP6 (ENSMICG00000027865) #29	NPAS3 (ENSMICG00000031841) #30	EGLN3 (ENSMICG00000000618) #31	ENSMICG00000047011	ENSMICG00000032213	SPTSSA (ENSMICG00000046623) #32	EAPP (ENSMICG00000044807) #33	KTN1 (ENSMICG00000032329)	TBPL2 (ENSMICG00000000943)
Lemuriformes_a	ANCESTRAL SPECIES	194										ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Coquerels sifaka	MODERN SPECIES	389									ENSPCOG00000016209	PRKD1 (ENSPCOG00000006865) #17	G2E3 (ENSPCOG00000015511) #18	SCFD1 (ENSPCOG00000025558) #19	ENSPCOG00000012773	COCH (ENSPCOG00000023301) #20	STRN3 (ENSPCOG00000001434) #21	AP4S1 (ENSPCOG00000016646) #22	ENSPCOG00000028456	HECTD1 (ENSPCOG00000020200) #23	HEATR5A (ENSPCOG00000022777) #24	DTD2 (ENSPCOG00000017568) #25	NUBPL (ENSPCOG00000022890) #27	ENSPCOG00000015979	ARHGAP5 (ENSPCOG00000024862) #28	AKAP6 (ENSPCOG00000013700) #29	NPAS3 (ENSPCOG00000020941) #30	ENSPCOG00000015194 #31	SPTSSA (ENSPCOG00000027257) #32	EAPP (ENSPCOG00000021389) #33
Greater bamboo lemur	MODERN SPECIES	36										ENSPSMG00000006107 #16	PRKD1 (ENSPSMG00000006073) #17	G2E3 (ENSPSMG00000005984) #18	SCFD1 (ENSPSMG00000005912) #19	COCH (ENSPSMG00000005691) #20	STRN3 (ENSPSMG00000005578) #21	AP4S1 (ENSPSMG00000005555) #22	HECTD1 (ENSPSMG00000005480) #23	HEATR5A (ENSPSMG00000005428) #24	DTD2 (ENSPSMG00000005383) #25	GPR33 (ENSPSMG00000005379) #26	NUBPL (ENSPSMG00000005363) #27	ARHGAP5 (ENSPSMG00000005335) #28
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Pecora	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.i	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.a	ENSGT01030000234551.k.d.b.a.a.a.a.f	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a	ENSGT01030000234551.k.d.b.b.c.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000163541.g	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	370																ENSCHYG00000018784 #22
Yarkand deer	MODERN SPECIES	1064																ENSCHYG00000009018 #22
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	4	LOXL1 (ENSCHYG00000020877)	ENSCHYG00000020922	ENSCHYG00000021005	ENSCHYG00000021099	GZMB (ENSCHYG00000021148)	STXBP6 (ENSCHYG00000021255) #13	NOVA1 (ENSCHYG00000021362) #14	ENSCHYG00000021616	ENSCHYG00000021647 #16	ENSCHYG00000021689 #17	ENSCHYG00000022162 #18	ENSCHYG00000022282 #19	ENSCHYG00000022664	ENSCHYG00000022706 #20	ENSCHYG00000022798 #21	ENSCHYG00000022926 #22	ENSCHYG00000023105 #23	ENSCHYG00000023175 #24	ENSCHYG00000023238 #25	ENSCHYG00000023264 #26	ENSCHYG00000023278 #27	ENSCHYG00000023411	ENSCHYG00000023459 #28	ENSCHYG00000023691 #17	ENSCHYG00000023954 #18	ENSCHYG00000024112 #19	ENSCHYG00000024190	ENSCHYG00000004572 #20	ENSCHYG00000004693 #21	ENSCHYG00000004784 #22	ENSCHYG00000004808 #23
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000022798 #21	ENSCHYG00000022926 #22	ENSCHYG00000023105 #23	ENSCHYG00000023175 #24	ENSCHYG00000023238 #25	ENSCHYG00000023264 #26	ENSCHYG00000023278 #27	ENSCHYG00000023411	ENSCHYG00000023459 #28	ENSCHYG00000023691 #17	ENSCHYG00000023954 #18	ENSCHYG00000024112 #19	ENSCHYG00000024190	ENSCHYG00000004572 #20	ENSCHYG00000004693 #21	ENSCHYG00000004784 #22	ENSCHYG00000004808 #23	ENSCHYG00000004859 #24	ENSCHYG00000005154 #25	ENSCHYG00000005175 #26	ENSCHYG00000005213 #27	ENSCHYG00000005261	ENSCHYG00000005283 #28	ENSCHYG00000005372 #29	ENSCHYG00000005433 #29	NPAS3 (ENSCHYG00000005548) #30	EGLN3 (ENSCHYG00000006118) #31	ENSCHYG00000006192	SPTSSA (ENSCHYG00000006204) #32	ENSCHYG00000006229	EAPP (ENSCHYG00000006243) #33
Yarkand deer	MODERN SPECIES	3	ACIN1 (ENSCHYG00000015090)	CDH24 (ENSCHYG00000016351)	PSMB11 (ENSCHYG00000016390)	ENSCHYG00000016436	C14orf93 (ENSCHYG00000016592)	AJUBA (ENSCHYG00000016731)	HAUS4 (ENSCHYG00000016879)	PRMT5 (ENSCHYG00000017109)	RBM23 (ENSCHYG00000018246)	REM2 (ENSCHYG00000018358)	LRP10 (ENSCHYG00000018426)	MMP14 (ENSCHYG00000018620)	SLC7A7 (ENSCHYG00000018767)	ENSCHYG00000018959	OXA1L (ENSCHYG00000019267)	ENSCHYG00000019500 #22	ENSCHYG00000019651	ABHD4 (ENSCHYG00000019707)	ENSCHYG00000019819	ENSCHYG00000019884	TRDV3 (ENSCHYG00000020003)	ENSCHYG00000009457	TRDV2 (ENSCHYG00000009486)	ENSCHYG00000009499	OR4E1 (ENSCHYG00000009527)	OR4E2 (ENSCHYG00000009552)	ENSCHYG00000009578	OR10G3 (ENSCHYG00000009604)	ENSCHYG00000009619	SALL2 (ENSCHYG00000009676)	METTL3 (ENSCHYG00000009777)
Yarkand deer	MODERN SPECIES	4	GSKIP (ENSCHYG00000024574)	ATG2B (ENSCHYG00000024459)	ENSCHYG00000024448	ENSCHYG00000024438	BDKRB1 (ENSCHYG00000024385)	ENSCHYG00000024356	ENSCHYG00000024343	TCL1A (ENSCHYG00000024332)	ENSCHYG00000024310	GLRX5 (ENSCHYG00000024294)	SYNE3 (ENSCHYG00000024117)	CLMN (ENSCHYG00000024002)	DICER1 (ENSCHYG00000023880)	GSC (ENSCHYG00000023856)	ENSCHYG00000023818	ENSCHYG00000023780 #22	ENSCHYG00000023693	SERPINA5 (ENSCHYG00000023635)	SERPINA12 (ENSCHYG00000023498)	ENSCHYG00000023475	SERPINA11 (ENSCHYG00000023440)	SERPINA1 (ENSCHYG00000023389)	SERPINA6 (ENSCHYG00000023370)	SERPINA10 (ENSCHYG00000023333)	PPP4R4 (ENSCHYG00000023072)	ENSCHYG00000023007	ENSCHYG00000022991	ENSCHYG00000022953	DDX24 (ENSCHYG00000022853)	OTUB2 (ENSCHYG00000022809)	CCDC197 (ENSCHYG00000022755)
Percora_a	ANCESTRAL SPECIES	20	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.a	ENSGT01030000234551.k.d.b.a.a.a.a.f	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a	ENSGT01030000234551.k.d.b.b.c.a.h	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000163541.g	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Siberian musk deer	MODERN SPECIES	1275									NOVA1 (ENSMMSG00000023209) #14	FOXG1 (ENSMMSG00000023196) #16	PRKD1 (ENSMMSG00000023150) #17	G2E3 (ENSMMSG00000023121) #18	SCFD1 (ENSMMSG00000023110) #19	ENSMMSG00000023033 #20	STRN3 (ENSMMSG00000022995) #21	AP4S1 (ENSMMSG00000022976) #22	HECTD1 (ENSMMSG00000022929) #23	ENSMMSG00000022922	HEATR5A (ENSMMSG00000022882) #24	DTD2 (ENSMMSG00000022862) #25	GPR33 (ENSMMSG00000022855) #26
Bovidae	ANCESTRAL SPECIES	20	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.a	ENSGT01030000234551.k.d.b.a.a.a.a.f	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a	ENSGT01030000234551.k.d.b.b.c.a.h.b.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000163541.g	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Caprinae	ANCESTRAL SPECIES	22	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.c	ENSGT01030000234551.k.d.b.a.a.b.i	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a.c	ENSGT01030000234551.k.d.b.a.a.a.a.e.a	ENSGT01030000234551.k.d.b.a.a.a.a.f	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499.k #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000163541.g	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Goat	MODERN SPECIES	13	ENSCHIG00000015005	ENSCHIG00000016245	ENSCHIG00000015715	ENSCHIG00000020332	ENSCHIG00000022005	STXBP6 (ENSCHIG00000018400) #13	ENSCHIG00000026291	NOVA1 (ENSCHIG00000018944) #14	FOXG1 (ENSCHIG00000022539) #16	PRKD1 (ENSCHIG00000017644) #17	ENSCHIG00000019781	G2E3 (ENSCHIG00000025802) #18	SCFD1 (ENSCHIG00000024335) #19	COCH (ENSCHIG00000007305) #20	STRN3 (ENSCHIG00000019005) #21	AP4S1 (ENSCHIG00000016142) #22	HECTD1 (ENSCHIG00000018114) #23	HEATR5A (ENSCHIG00000010796) #24	ENSCHIG00000011637 #25	GPR33 (ENSCHIG00000007857) #26	NUBPL (ENSCHIG00000006710) #27	ARHGAP5 (ENSCHIG00000010874) #28	AKAP6 (ENSCHIG00000024298) #29	NPAS3 (ENSCHIG00000019397) #30	EGLN3 (ENSCHIG00000016948) #31	ENSCHIG00000021678	ENSCHIG00000008804 #32	ENSCHIG00000016213	EAPP (ENSCHIG00000022171) #33	ENSCHIG00000017907 #34	CFL2 (ENSCHIG00000015758) #35
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020024767	ENSOARG00020003344	ENSOARG00020003394	ENSOARG00020003470	ENSOARG00020003828	ENSOARG00020004153 #13	ENSOARG00020004189 #13	ENSOARG00020004201	NOVA1 (ENSOARG00020004244) #14	FOXG1 (ENSOARG00020004300) #16	PRKD1 (ENSOARG00020004370) #17	G2E3 (ENSOARG00020004595) #18	SCFD1 (ENSOARG00020004656) #19	COCH (ENSOARG00020004770) #20	STRN3 (ENSOARG00020004854) #21	AP4S1 (ENSOARG00020004957) #22	HECTD1 (ENSOARG00020005016) #23	HEATR5A (ENSOARG00020005213) #24	DTD2 (ENSOARG00020005329) #25	GPR33 (ENSOARG00020005349) #26	NUBPL (ENSOARG00020005362) #27	ENSOARG00020005406	ARHGAP5 (ENSOARG00020005438) #28	AKAP6 (ENSOARG00020005604) #29	NPAS3 (ENSOARG00020005668) #30	EGLN3 (ENSOARG00020005770) #31	ENSOARG00020005825 #32	ENSOARG00020005839 #33	SNX6 (ENSOARG00020005948) #34	CFL2 (ENSOARG00020006245) #35	BAZ1A (ENSOARG00020006340) #36
Bovinae	ANCESTRAL SPECIES	19	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a.f	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Bos	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.gb #34	ENSGT00950000183000.c.b #35
Bos_a	ANCESTRAL SPECIES	10	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.b	ENSGT01030000234551.k.d.b.a.a.b.i	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.fb.a #34	ENSGT00940000154940.gb #34	ENSGT00950000183000.c.b #35
Domestic yak	MODERN SPECIES	8	ENSBGRG00000005384	ENSBGRG00000005401	ENSBGRG00000005455	ENSBGRG00000005616	STXBP6 (ENSBGRG00000005667) #13	NOVA1 (ENSBGRG00000005746) #14	ENSBGRG00000005891	ENSBGRG00000005905	FOXG1 (ENSBGRG00000005921) #16	PRKD1 (ENSBGRG00000006007) #17	G2E3 (ENSBGRG00000006521) #18	SCFD1 (ENSBGRG00000006679) #19	ENSBGRG00000006918	COCH (ENSBGRG00000006941) #20	STRN3 (ENSBGRG00000007105) #21	AP4S1 (ENSBGRG00000007586) #22	HECTD1 (ENSBGRG00000007751) #23	ENSBGRG00000007953	HEATR5A (ENSBGRG00000007992) #24	DTD2 (ENSBGRG00000008143) #25	NUBPL (ENSBGRG00000008223) #27	ENSBGRG00000008307	ENSBGRG00000008358	ARHGAP5 (ENSBGRG00000008406) #28	AKAP6 (ENSBGRG00000008525) #29	NPAS3 (ENSBGRG00000008650) #30	ENSBGRG00000009008	EGLN3 (ENSBGRG00000009029) #31	SPTSSA (ENSBGRG00000009176) #32	EAPP (ENSBGRG00000009269) #33	CFL2 (ENSBGRG00000009349) #35
Wild yak	MODERN SPECIES	298														COCH (ENSBMUG00000012618) #20	STRN3 (ENSBMUG00000012562) #21	AP4S1 (ENSBMUG00000012479) #22	HECTD1 (ENSBMUG00000012439) #23	HEATR5A (ENSBMUG00000012373) #24	DTD2 (ENSBMUG00000012325) #25	ENSBMUG00000012283
Bos_b	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.i	ENSGT01030000234551.k.d.b.a.a.b.j	ENSGT01030000234551.k.d.b.a.a.a.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940.gb #34	ENSGT00950000183000.c.b #35
Hybrid Bos Indicus	MODERN SPECIES	13	ENSBIXG00005009049	ENSBIXG00005005146	ENSBIXG00005001958	ENSBIXG00005001991	GZMB (ENSBIXG00005002071)	STXBP6 (ENSBIXG00005002110) #13	NOVA1 (ENSBIXG00005005044) #14	ENSBIXG00005002282	FOXG1 (ENSBIXG00005002315) #16	PRKD1 (ENSBIXG00005028790) #17	G2E3 (ENSBIXG00005028509) #18	SCFD1 (ENSBIXG00005028488) #19	ENSBIXG00005028450	COCH (ENSBIXG00005028431) #20	STRN3 (ENSBIXG00005004875) #21	AP4S1 (ENSBIXG00005028268) #22	ENSBIXG00005028238	HECTD1 (ENSBIXG00005028215) #23	ENSBIXG00005028130	HEATR5A (ENSBIXG00005028101) #24	ENSBIXG00005027995 #25	GPR33 (ENSBIXG00005027980) #26	NUBPL (ENSBIXG00005027931) #27	ENSBIXG00005004787	ENSBIXG00005027817	ARHGAP5 (ENSBIXG00005027783) #28	AKAP6 (ENSBIXG00005004751) #29	ENSBIXG00005027635	NPAS3 (ENSBIXG00005004743) #30	EGLN3 (ENSBIXG00005004670) #31	SPTSSA (ENSBIXG00005027156) #32
Cow	MODERN SPECIES	13	ENSBTAG00000050353	ENSBTAG00000040134	ENSBTAG00000010828	ENSBTAG00000013055	ENSBTAG00000038080	GZMB (ENSBTAG00000010057)	STXBP6 (ENSBTAG00000021291) #13	NOVA1 (ENSBTAG00000002170) #14	ENSBTAG00000031558	FOXG1 (ENSBTAG00000011113) #16	PRKD1 (ENSBTAG00000012789) #17	G2E3 (ENSBTAG00000001617) #18	SCFD1 (ENSBTAG00000017565) #19	COCH (ENSBTAG00000021844) #20	STRN3 (ENSBTAG00000021845) #21	AP4S1 (ENSBTAG00000017201) #22	HECTD1 (ENSBTAG00000032477) #23	HEATR5A (ENSBTAG00000022847) #24	ENSBTAG00000038020 #25	GPR33 (ENSBTAG00000010536) #26	NUBPL (ENSBTAG00000044121) #27	ENSBTAG00000055201	ARHGAP5 (ENSBTAG00000027024) #28	AKAP6 (ENSBTAG00000017719) #29	NPAS3 (ENSBTAG00000004462) #30	EGLN3 (ENSBTAG00000008172) #31	SPTSSA (ENSBTAG00000013981) #32	EAPP (ENSBTAG00000003419) #33	SNX6 (ENSBTAG00000012873) #34	CFL2 (ENSBTAG00000015053) #35	BAZ1A (ENSBTAG00000020164) #36
American bison	MODERN SPECIES	3159										ENSBBBG00000005060	G2E3 (ENSBBBG00000009177) #18	ENSBBBG00000009180	SCFD1 (ENSBBBG00000019438) #19	COCH (ENSBBBG00000019503) #20	STRN3 (ENSBBBG00000007277) #21	AP4S1 (ENSBBBG00000019582) #22	HECTD1 (ENSBBBG00000019676) #23	HEATR5A (ENSBBBG00000019715) #24	ENSBBBG00000019724 #25	NUBPL (ENSBBBG00000019729) #27	ARHGAP5 (ENSBBBG00000019759) #28	AKAP6 (ENSBBBG00000019789) #29	NPAS3 (ENSBBBG00000007628) #30
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000154563.m.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Blue whale	MODERN SPECIES	11	ENSBMSG00010012441	GZMH (ENSBMSG00010012451)	ENSBMSG00010012468	GZMB (ENSBMSG00010012482)	STXBP6 (ENSBMSG00010012498) #13	NOVA1 (ENSBMSG00010012536) #14	ENSBMSG00010012567	ENSBMSG00010012582	ENSBMSG00010012592	FOXG1 (ENSBMSG00010012602) #16	PRKD1 (ENSBMSG00010012633) #17	ENSBMSG00010012692 #18	SCFD1 (ENSBMSG00010012723) #19	COCH (ENSBMSG00010012783) #20	STRN3 (ENSBMSG00010012838) #21	AP4S1 (ENSBMSG00010012875) #22	HECTD1 (ENSBMSG00010012906) #23	HEATR5A (ENSBMSG00010012932) #24	DTD2 (ENSBMSG00010012949) #25	GPR33 (ENSBMSG00010012958) #26	NUBPL (ENSBMSG00010012964) #27	ARHGAP5 (ENSBMSG00010012978) #28	AKAP6 (ENSBMSG00010013021) #29	NPAS3 (ENSBMSG00010013089) #30	EGLN3 (ENSBMSG00010013202) #31	ENSBMSG00010013221	ENSBMSG00010013231 #33	ENSBMSG00010013245	ENSBMSG00010013286	ENSBMSG00010013306 #33	ENSBMSG00010013323
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000154563.m.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Sperm whale	MODERN SPECIES	2	ENSPCTG00005005862	ENSPCTG00005005891	GZMH (ENSPCTG00005005924)	ENSPCTG00005005984	GZMB (ENSPCTG00005006025)	STXBP6 (ENSPCTG00005006076) #13	NOVA1 (ENSPCTG00005006112) #14	ENSPCTG00005006193	FOXG1 (ENSPCTG00005006210) #16	PRKD1 (ENSPCTG00005006240) #17	ENSPCTG00005006324	G2E3 (ENSPCTG00005006361) #18	SCFD1 (ENSPCTG00005006460) #19	COCH (ENSPCTG00005006564) #20	STRN3 (ENSPCTG00005006776) #21	AP4S1 (ENSPCTG00005006956) #22	HECTD1 (ENSPCTG00005007027) #23	ENSPCTG00005007130	HEATR5A (ENSPCTG00005007185) #24	DTD2 (ENSPCTG00005007351) #25	GPR33 (ENSPCTG00005007371) #26	ENSPCTG00005007379	ENSPCTG00005007388	NUBPL (ENSPCTG00005007415) #27	ENSPCTG00005007465	ARHGAP5 (ENSPCTG00005007494) #28	AKAP6 (ENSPCTG00005007589) #29	NPAS3 (ENSPCTG00005007723) #30	EGLN3 (ENSPCTG00005008171) #31	SPTSSA (ENSPCTG00005008208) #32	ENSPCTG00005008216
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000154563.m.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B.l #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000015821.h	ENSGT00390000002766.b.b #32	ENSGT00390000001332.m #33	ENSGT00940000154940 #34
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01000000214889	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154563.m.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B.l #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.m #33	ENSGT00940000178928	ENSGT00940000154940 #34
Monodontidae	ANCESTRAL SPECIES	11	ENSGT01100000263511.b.a.a.a.b.a.a.a.b.a.b.a.a.b.a.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00940000154563.m.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B.l #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.m #33	ENSGT00940000178928	ENSGT00940000154940 #34
Narwhal	MODERN SPECIES	308	ENSMMNG00015017063	GZMH (ENSMMNG00015017095)	ENSMMNG00015017165	GZMB (ENSMMNG00015017321)	STXBP6 (ENSMMNG00015017391) #13	NOVA1 (ENSMMNG00015017472) #14	ENSMMNG00015017696	ENSMMNG00015017733	FOXG1 (ENSMMNG00015017758) #16	PRKD1 (ENSMMNG00015017800) #17	G2E3 (ENSMMNG00015017922) #18	SCFD1 (ENSMMNG00015017990) #19	ENSMMNG00015018060	COCH (ENSMMNG00015018104) #20	STRN3 (ENSMMNG00015018258) #21	AP4S1 (ENSMMNG00015018404) #22	HECTD1 (ENSMMNG00015018463) #23	HEATR5A (ENSMMNG00015018679) #24	DTD2 (ENSMMNG00015018797) #25	GPR33 (ENSMMNG00015018815) #26	NUBPL (ENSMMNG00015018841) #27	ENSMMNG00015018891	ARHGAP5 (ENSMMNG00015018917) #28	AKAP6 (ENSMMNG00015018988) #29	NPAS3 (ENSMMNG00015019078) #30	EGLN3 (ENSMMNG00015019291) #31	SPTSSA (ENSMMNG00015019349) #32	ENSMMNG00015019371 #33	ENSMMNG00015019404	SNX6 (ENSMMNG00015019443) #34	CFL2 (ENSMMNG00015019505) #35
Beluga whale	MODERN SPECIES	44	ENSDLEG00000018089	ENSDLEG00000018087	GZMH (ENSDLEG00000018044)	ENSDLEG00000017935	GZMB (ENSDLEG00000017882)	STXBP6 (ENSDLEG00000017850) #13	NOVA1 (ENSDLEG00000017821) #14	ENSDLEG00000017806	ENSDLEG00000017774	FOXG1 (ENSDLEG00000017768) #16	PRKD1 (ENSDLEG00000017654) #17	G2E3 (ENSDLEG00000017592) #18	SCFD1 (ENSDLEG00000016160) #19	COCH (ENSDLEG00000015954) #20	STRN3 (ENSDLEG00000015905) #21	AP4S1 (ENSDLEG00000015895) #22	HECTD1 (ENSDLEG00000015830) #23	HEATR5A (ENSDLEG00000013600) #24	DTD2 (ENSDLEG00000013452) #25	GPR33 (ENSDLEG00000013450) #26	NUBPL (ENSDLEG00000013432) #27	ENSDLEG00000012791	ARHGAP5 (ENSDLEG00000012779) #28	ENSDLEG00000012755 #29	ENSDLEG00000012743 #29	ENSDLEG00000012728	NPAS3 (ENSDLEG00000012702) #30	EGLN3 (ENSDLEG00000012687) #31	ENSDLEG00000012666	SPTSSA (ENSDLEG00000012661) #32	ENSDLEG00000012640
Vaquita	MODERN SPECIES	11	GZMH (ENSPSNG00000014903)	ENSPSNG00000015017	GZMB (ENSPSNG00000015289)	STXBP6 (ENSPSNG00000015449) #13	NOVA1 (ENSPSNG00000015532) #14	ENSPSNG00000015685	ENSPSNG00000015742	ENSPSNG00000015766	FOXG1 (ENSPSNG00000015806) #16	PRKD1 (ENSPSNG00000015859) #17	G2E3 (ENSPSNG00000015993) #18	SCFD1 (ENSPSNG00000016119) #19	ENSPSNG00000016285	COCH (ENSPSNG00000016321) #20	STRN3 (ENSPSNG00000016653) #21	AP4S1 (ENSPSNG00000016811) #22	HECTD1 (ENSPSNG00000016911) #23	HEATR5A (ENSPSNG00000017090) #24	DTD2 (ENSPSNG00000017275) #25	NUBPL (ENSPSNG00000017395) #27	ENSPSNG00000017433	ARHGAP5 (ENSPSNG00000017472) #28	AKAP6 (ENSPSNG00000017615) #29	NPAS3 (ENSPSNG00000017739) #30	EGLN3 (ENSPSNG00000018355) #31	ENSPSNG00000018446	SPTSSA (ENSPSNG00000018482) #32	ENSPSNG00000018496	ENSPSNG00000018519 #33	ENSPSNG00000018564	SNX6 (ENSPSNG00000018667) #34
Dolphin	MODERN SPECIES	3098																AP4S1 (ENSTTRG00000003740) #22	HECTD1 (ENSTTRG00000003749) #23	HEATR5A (ENSTTRG00000003780) #24	DTD2 (ENSTTRG00000003788) #25
Camelidae	ANCESTRAL SPECIES	41	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000167277	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Arabian camel	MODERN SPECIES	32	SDR39U1 (ENSCDRG00005007148)	ENSCDRG00005007233	ENSCDRG00005007274	CTSG (ENSCDRG00005007532)	GZMB (ENSCDRG00005007583)	ENSCDRG00005007809	ENSCDRG00005012488	STXBP6 (ENSCDRG00005012893) #13	NOVA1 (ENSCDRG00005012968) #14	ENSCDRG00005013058 #16	PRKD1 (ENSCDRG00005013080) #17	G2E3 (ENSCDRG00005013242) #18	SCFD1 (ENSCDRG00005013449) #19	COCH (ENSCDRG00005013624) #20	STRN3 (ENSCDRG00005013738) #21	AP4S1 (ENSCDRG00005014200) #22	HECTD1 (ENSCDRG00005014317) #23	ENSCDRG00005014715	HEATR5A (ENSCDRG00005014747) #24	DTD2 (ENSCDRG00005015091) #25	GPR33 (ENSCDRG00005015130) #26	NUBPL (ENSCDRG00005015152) #27	ARHGAP5 (ENSCDRG00005015272) #28	AKAP6 (ENSCDRG00005015475) #29	ENSCDRG00005015572 #30	EGLN3 (ENSCDRG00005015624) #31	ENSCDRG00005015685	EAPP (ENSCDRG00005015710) #33	SNX6 (ENSCDRG00005015791) #34	CFL2 (ENSCDRG00005016024) #35	BAZ1A (ENSCDRG00005016142) #36
Alpaca	MODERN SPECIES	3130												G2E3 (ENSVPAG00000011672) #18	SCFD1 (ENSVPAG00000011674) #19	COCH (ENSVPAG00000011675) #20	STRN3 (ENSVPAG00000011677) #21	AP4S1 (ENSVPAG00000011678) #22	HECTD1 (ENSVPAG00000011679) #23	HEATR5A (ENSVPAG00000011680) #24	DTD2 (ENSVPAG00000011684) #25	NUBPL (ENSVPAG00000011685) #27
Suina	ANCESTRAL SPECIES	30	ENSGT00940000160923	ENSGT00940000161519	ENSGT00940000162110	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT01020000230798	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Chacoan peccary	MODERN SPECIES	883	KHNYN (ENSCWAG00000017079)	SDR39U1 (ENSCWAG00000017148)	ENSCWAG00000017344	CTSG (ENSCWAG00000019691)	GZMH (ENSCWAG00000019725)	GZMB (ENSCWAG00000019878)	STXBP6 (ENSCWAG00000019905) #13	ENSCWAG00000019934	NOVA1 (ENSCWAG00000019948) #14	FOXG1 (ENSCWAG00000020028) #16	PRKD1 (ENSCWAG00000020049) #17	G2E3 (ENSCWAG00000020142) #18	SCFD1 (ENSCWAG00000020229) #19	COCH (ENSCWAG00000020293) #20	STRN3 (ENSCWAG00000020364) #21	AP4S1 (ENSCWAG00000020431) #22	HECTD1 (ENSCWAG00000020463) #23	HEATR5A (ENSCWAG00000020563) #24	DTD2 (ENSCWAG00000020644) #25	GPR33 (ENSCWAG00000020655) #26	NUBPL (ENSCWAG00000020665) #27	ARHGAP5 (ENSCWAG00000020683) #28	AKAP6 (ENSCWAG00000020720) #29	NPAS3 (ENSCWAG00000020800) #30	EGLN3 (ENSCWAG00000021081) #31	SPTSSA (ENSCWAG00000021089) #32	EAPP (ENSCWAG00000021095) #33	SNX6 (ENSCWAG00000021128) #34	CFL2 (ENSCWAG00000021171) #35	BAZ1A (ENSCWAG00000021194) #36	ENSCWAG00000021220
Pig	MODERN SPECIES	15	ENSSSCG00000029370	GZMH (ENSSSCG00000001978)	GZMB (ENSSSCG00000059880)	STXBP6 (ENSSSCG00000001977) #13	ENSSSCG00000042858	ENSSSCG00000050140	NOVA1 (ENSSSCG00000024396) #14	ENSSSCG00000046287	FOXG1 (ENSSSCG00000033761) #16	ENSSSCG00000047109	PRKD1 (ENSSSCG00000001975) #17	G2E3 (ENSSSCG00000001974) #18	SCFD1 (ENSSSCG00000001973) #19	COCH (ENSSSCG00000022679) #20	STRN3 (ENSSSCG00000040657) #21	AP4S1 (ENSSSCG00000001972) #22	HECTD1 (ENSSSCG00000001971) #23	ENSSSCG00000001970 #24	ENSSSCG00000061987 #24	DTD2 (ENSSSCG00000026663) #25	GPR33 (ENSSSCG00000025131) #26	ENSSSCG00000044304	NUBPL (ENSSSCG00000001968) #27	ARHGAP5 (ENSSSCG00000001966) #28	AKAP6 (ENSSSCG00000024517) #29	NPAS3 (ENSSSCG00000001964) #30	ENSSSCG00000036652	EGLN3 (ENSSSCG00000001963) #31	SPTSSA (ENSSSCG00000060304) #32	EAPP (ENSSSCG00000001960) #33	SNX6 (ENSSSCG00000040912) #34
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Carnivora	ANCESTRAL SPECIES		ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Felidae	ANCESTRAL SPECIES	1	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a.d #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Panthera	DUPLICATION
Panthera	DUPLICATION
Panthera	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a.d #21	ENSGT00970000193421.B.c.a #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Panthera_a	ANCESTRAL SPECIES	7	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00530000063666.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a.d #21	ENSGT00970000193421.B.d #22	ENSGT00950000183095.a.a.c #21	ENSGT00970000193421.B.c.a #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
leopard	MODERN SPECIES	112							ENSPPRG00000012178	ENSPPRG00000012344 #16	PRKD1 (ENSPPRG00000012056) #17	G2E3 (ENSPPRG00000011841) #18	SCFD1 (ENSPPRG00000011656) #19	ENSPPRG00000011631	COCH (ENSPPRG00000011542) #20	ENSPPRG00000011448 #21	ENSPPRG00000011315 #21	ENSPPRG00000011288 #22	HECTD1 (ENSPPRG00000011166) #23	HEATR5A (ENSPPRG00000010977) #24	DTD2 (ENSPPRG00000010899) #25	NUBPL (ENSPPRG00000010686) #27	ENSPPRG00000010606	ARHGAP5 (ENSPPRG00000010531) #28	AKAP6 (ENSPPRG00000010405) #29	NPAS3 (ENSPPRG00000010049) #30	EGLN3 (ENSPPRG00000009618) #31	EAPP (ENSPPRG00000009599) #33
Tiger	MODERN SPECIES	578	KHNYN (ENSPTIG00000018107)	SDR39U1 (ENSPTIG00000020216)	CMA1 (ENSPTIG00000021159)	ENSPTIG00000021407	CTSG (ENSPTIG00000021808)	GZMH (ENSPTIG00000021936)	GZMB (ENSPTIG00000000297)	STXBP6 (ENSPTIG00000006999) #13	NOVA1 (ENSPTIG00000009518) #14	ENSPTIG00000004679 #16	PRKD1 (ENSPTIG00000011129) #17	G2E3 (ENSPTIG00000013202) #18	SCFD1 (ENSPTIG00000015762) #19	COCH (ENSPTIG00000017113) #20	STRN3 (ENSPTIG00000018841) #21	ENSPTIG00000019757 #22	HECTD1 (ENSPTIG00000020313) #23	ENSPTIG00000000922	HEATR5A (ENSPTIG00000003357) #24	DTD2 (ENSPTIG00000008518) #25	NUBPL (ENSPTIG00000009627) #27	ARHGAP5 (ENSPTIG00000011092) #28	AKAP6 (ENSPTIG00000012016) #29	NPAS3 (ENSPTIG00000015688) #30	EGLN3 (ENSPTIG00000017846) #31	EAPP (ENSPTIG00000018266) #33
Panthera	ANCESTRAL SPECIES	75											ENSGT00940000159568	ENSGT00390000012178.g.b.a.a	ENSGT00390000012030.b.a	ENSGT00940000155902	ENSGT00940000160087	ENSGT00970000193421.B.c.b #22
Tiger	MODERN SPECIES	336											ATP7A (ENSPTIG00000021533)	COX7B (ENSPTIG00000021523)	MAGT1 (ENSPTIG00000021447)	ATRX (ENSPTIG00000021388)	FGF16 (ENSPTIG00000021358)	ENSPTIG00000021338 #22
Panthera_a	ANCESTRAL SPECIES	90											ENSGT00940000159568	ENSGT00390000012178.g.b.a.a	ENSGT00390000012030.b.a	ENSGT00940000155902	ENSGT00940000160087	ENSGT00970000193421.B.c.b #22
leopard	MODERN SPECIES	191										ENSPPRG00000024369	ATP7A (ENSPPRG00000024314)	COX7B (ENSPPRG00000024301)	MAGT1 (ENSPPRG00000024285)	ATRX (ENSPPRG00000024247)	FGF16 (ENSPPRG00000024226)	ENSPPRG00000024213 #22
Panthera	ANCESTRAL SPECIES																	ENSGT00970000193421.B.d #22
Panthera_a	ANCESTRAL SPECIES	7	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00530000063666.a.d	ENSGT00940000159386 #20	ENSGT00950000183095.a.a.d #21	ENSGT00970000193421.B.d #22	ENSGT00950000183095.a.a.c #21	ENSGT00970000193421.B.c.a #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
lion	MODERN SPECIES	6	CMA1 (ENSPLOG00000020413)	ENSPLOG00000020469	CTSG (ENSPLOG00000020586)	GZMH (ENSPLOG00000020636)	ENSPLOG00000020744	STXBP6 (ENSPLOG00000020897) #13	ENSPLOG00000020942 #14	ENSPLOG00000020986 #16	ENSPLOG00000021005	PRKD1 (ENSPLOG00000021084) #17	G2E3 (ENSPLOG00000000330) #18	SCFD1 (ENSPLOG00000000380) #19	ENSPLOG00000000466	COCH (ENSPLOG00000000512) #20	STRN3 (ENSPLOG00000000594) #21	AP4S1 (ENSPLOG00000000730) #22	HECTD1 (ENSPLOG00000000806) #23	HEATR5A (ENSPLOG00000000896) #24	DTD2 (ENSPLOG00000000933) #25	GPR33 (ENSPLOG00000000949) #26	NUBPL (ENSPLOG00000000974) #27	ARHGAP5 (ENSPLOG00000001022) #28	AKAP6 (ENSPLOG00000001171) #29	NPAS3 (ENSPLOG00000001299) #30	ENSPLOG00000001420	EGLN3 (ENSPLOG00000001437) #31	ENSPLOG00000001468	SPTSSA (ENSPLOG00000001474) #32	EAPP (ENSPLOG00000001486) #33	ENSPLOG00000001525 #34	ENSPLOG00000001550 #35
Cat	DUPLICATION
Cat	MODERN SPECIES	237	CMA1 (ENSFCAG00000005607)	ENSFCAG00000008194	CTSG (ENSFCAG00000046114)	GZMB (ENSFCAG00000002893)	ENSFCAG00000013499	STXBP6 (ENSFCAG00000022477) #13	NOVA1 (ENSFCAG00000004226) #14	ENSFCAG00000048489	FOXG1 (ENSFCAG00000044917) #16	ENSFCAG00000053196	PRKD1 (ENSFCAG00000014491) #17	G2E3 (ENSFCAG00000001645) #18	SCFD1 (ENSFCAG00000028507) #19	COCH (ENSFCAG00000011638) #20	STRN3 (ENSFCAG00000013708) #21	AP4S1 (ENSFCAG00000005738) #22	HECTD1 (ENSFCAG00000001734) #23	ENSFCAG00000038310	HEATR5A (ENSFCAG00000014756) #24	DTD2 (ENSFCAG00000031441) #25	GPR33 (ENSFCAG00000030877) #26	NUBPL (ENSFCAG00000024538) #27	ARHGAP5 (ENSFCAG00000024536) #28	AKAP6 (ENSFCAG00000010934) #29	NPAS3 (ENSFCAG00000041731) #30	EGLN3 (ENSFCAG00000040826) #31	ENSFCAG00000023772	SPTSSA (ENSFCAG00000042893) #32	EAPP (ENSFCAG00000030251) #33	SNX6 (ENSFCAG00000018851) #34	CFL2 (ENSFCAG00000008480) #35
Cat	MODERN SPECIES	252	ENSFCAG00000018360	TBX22 (ENSFCAG00000002301)	ITM2A (ENSFCAG00000007957)	P2RY10 (ENSFCAG00000035535)	CYSLTR1 (ENSFCAG00000024786)	ENSFCAG00000022156	TAF9B (ENSFCAG00000025493)	ENSFCAG00000013209	ENSFCAG00000034406	ENSFCAG00000053752	ATP7A (ENSFCAG00000022051)	COX7B (ENSFCAG00000033601)	MAGT1 (ENSFCAG00000024932)	ATRX (ENSFCAG00000030040)	FGF16 (ENSFCAG00000029609)	ENSFCAG00000025177 #22	PBDC1 (ENSFCAG00000027255)	MAGEE2 (ENSFCAG00000027322)	ZDHHC15 (ENSFCAG00000014128)	ENSFCAG00000042637	ENSFCAG00000034660	ENSFCAG00000049082	UPRT (ENSFCAG00000015059)	ENSFCAG00000025696	ABCB7 (ENSFCAG00000009557)	RLIM (ENSFCAG00000003136)	SLC16A2 (ENSFCAG00000008075)	ZCCHC13 (ENSFCAG00000034344)	ENSFCAG00000034997	ENSFCAG00000040388	ENSFCAG00000022629
Caniformia	ANCESTRAL SPECIES	15	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Caniformia_b	ANCESTRAL SPECIES	14	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Ursidae	ANCESTRAL SPECIES	10	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000011943.a.a.b	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Ursus	ANCESTRAL SPECIES	202										ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000011943.a.a.b	ENSGT00390000006205.b #24	ENSGT00390000016972.a.a.b.b.a	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000001332 #33
American black bear	MODERN SPECIES	3121																AP4S1 (ENSUAMG00000014792) #22	HECTD1 (ENSUAMG00000014859) #23	ENSUAMG00000016611
Polar bear	MODERN SPECIES	413									ENSUMAG00000005579 #16	ENSUMAG00000005585	PRKD1 (ENSUMAG00000005703) #17	G2E3 (ENSUMAG00000006635) #18	SCFD1 (ENSUMAG00000006644) #19	COCH (ENSUMAG00000006665) #20	STRN3 (ENSUMAG00000006765) #21	AP4S1 (ENSUMAG00000007515) #22	HECTD1 (ENSUMAG00000007523) #23	ENSUMAG00000007548	HEATR5A (ENSUMAG00000007915) #24	ENSUMAG00000010111	ENSUMAG00000010115 #25	GPR33 (ENSUMAG00000010119) #26	NUBPL (ENSUMAG00000010133) #27	ARHGAP5 (ENSUMAG00000010158) #28	ENSUMAG00000010161	AKAP6 (ENSUMAG00000010177) #29	NPAS3 (ENSUMAG00000010286) #30	EGLN3 (ENSUMAG00000010391) #31	EAPP (ENSUMAG00000010403) #33
Giant Panda	MODERN SPECIES	12	CMA1 (ENSAMEG00000015898)	ENSAMEG00000015886	CTSG (ENSAMEG00000029866)	GZMB (ENSAMEG00000015872)	ENSAMEG00000025225	STXBP6 (ENSAMEG00000015837) #13	NOVA1 (ENSAMEG00000015330) #14	ENSAMEG00000024395	FOXG1 (ENSAMEG00000025179) #16	ENSAMEG00000004988	PRKD1 (ENSAMEG00000004991) #17	G2E3 (ENSAMEG00000005054) #18	SCFD1 (ENSAMEG00000005072) #19	COCH (ENSAMEG00000015859) #20	STRN3 (ENSAMEG00000015829) #21	AP4S1 (ENSAMEG00000015823) #22	HECTD1 (ENSAMEG00000015770) #23	ENSAMEG00000028378	HEATR5A (ENSAMEG00000015736) #24	DTD2 (ENSAMEG00000024284) #25	GPR33 (ENSAMEG00000019764) #26	NUBPL (ENSAMEG00000015724) #27	ARHGAP5 (ENSAMEG00000015709) #28	AKAP6 (ENSAMEG00000015685) #29	NPAS3 (ENSAMEG00000029238) #30	EGLN3 (ENSAMEG00000023682) #31	SPTSSA (ENSAMEG00000028071) #32	EAPP (ENSAMEG00000006454) #33	SNX6 (ENSAMEG00000015476) #34	CFL2 (ENSAMEG00000015508) #35	BAZ1A (ENSAMEG00000015512) #36
Mustelinae	ANCESTRAL SPECIES	32	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000166226	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
American mink	MODERN SPECIES	84								ENSNVIG00000004128	ENSNVIG00000004119	ENSNVIG00000004111 #16	PRKD1 (ENSNVIG00000003993) #17	G2E3 (ENSNVIG00000003931) #18	SCFD1 (ENSNVIG00000003759) #19	COCH (ENSNVIG00000003618) #20	STRN3 (ENSNVIG00000003579) #21	AP4S1 (ENSNVIG00000003530) #22	HECTD1 (ENSNVIG00000003432) #23	ENSNVIG00000003418	F5H619 (ENSNVIG00000003257) #24	DTD2 (ENSNVIG00000003240) #25	GPR33 (ENSNVIG00000003227) #26	NUBPL (ENSNVIG00000003207) #27	ARHGAP5 (ENSNVIG00000003107) #28	AKAP6 (ENSNVIG00000003054) #29	NPAS3 (ENSNVIG00000002999) #30	EGLN3 (ENSNVIG00000002975) #31	ENSNVIG00000002935	SPTSSA (ENSNVIG00000002933) #32	EAPP (ENSNVIG00000002902) #33	SNX6 (ENSNVIG00000002824) #34	CFL2 (ENSNVIG00000002744) #35
Ferret	MODERN SPECIES	210	CMA1 (ENSMPUG00000005588)	CTSG (ENSMPUG00000005559)	GZMH (ENSMPUG00000005487)	GZMB (ENSMPUG00000005479)	ENSMPUG00000005470 #13	NOVA1 (ENSMPUG00000005462) #14	ENSMPUG00000005454	ENSMPUG00000018867	ENSMPUG00000018865	FOXG1 (ENSMPUG00000005425) #16	PRKD1 (ENSMPUG00000005409) #17	G2E3 (ENSMPUG00000005396) #18	SCFD1 (ENSMPUG00000005374) #19	COCH (ENSMPUG00000005358) #20	STRN3 (ENSMPUG00000005340) #21	AP4S1 (ENSMPUG00000005330) #22	HECTD1 (ENSMPUG00000005315) #23
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES																	ENSGT00970000193421.B.g #22
Canis_lupus	ANCESTRAL SPECIES																	ENSGT00970000193421.B.g #22
Dog	MODERN SPECIES	31	ENSCAFG00845027160	UHMK1 (ENSCAFG00845027027)	UAP1 (ENSCAFG00845026767)	DDR2 (ENSCAFG00845026475)	HSD17B7 (ENSCAFG00845026233)	CCDC190 (ENSCAFG00845026143)	RGS4 (ENSCAFG00845026010)	RGS5 (ENSCAFG00845025929)	NUF2 (ENSCAFG00845025722)	PBX1 (ENSCAFG00845025355)	LMX1A (ENSCAFG00845025098)	RXRG (ENSCAFG00845024833)	LRRC52 (ENSCAFG00845024741)	MGST3 (ENSCAFG00845024662)	ENSCAFG00845024594	ENSCAFG00845024557 #22	TMCO1 (ENSCAFG00845024491)	UCK2 (ENSCAFG00845024343)	FAM78B (ENSCAFG00845024241)	ENSCAFG00845030595	ENSCAFG00845030578	BROX (ENSCAFG00845030521)	AIDA (ENSCAFG00845030498)	MIA3 (ENSCAFG00845030361)	TAF1A (ENSCAFG00845030298)	HHIPL2 (ENSCAFG00845030272)	DUSP10 (ENSCAFG00845030259)	ENSCAFG00845030246	HLX (ENSCAFG00845030227)	MTARC1 (ENSCAFG00845030177)	ENSCAFG00845030148
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	4	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00510000046986.v.a.a.b.a.b.b.a	ENSGT00940000166484	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.h.a #22	ENSGT00940000165919	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.w #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000156499 #13	ENSGT01050000248456	ENSGT00940000155573 #14	ENSGT00950000183206.b.c.b.o.a	ENSGT00390000005569.x.a.b.b.a.a	ENSGT00940000155120.lb.a.b.b	ENSGT00940000160678.a #16	ENSGT00510000046986.v.a.a.b.a.b.b.a	ENSGT00940000166484	ENSGT00950000183024.a.b.a #17	ENSGT00950000183030.m.a.b.b.d.b.b	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B.h.a #22	ENSGT00940000165919	ENSGT00940000156572 #23	ENSGT00390000008918.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.o #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00940000170035	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332.w #33	ENSGT00940000154940 #34
Dingo	MODERN SPECIES	161	ENSCAFG00020024149 #14	ENSCAFG00020024148	ENSCAFG00020024147	ENSCAFG00020024144	FOXG1 (ENSCAFG00020024141) #16	ENSCAFG00020024139	NACA2 (ENSCAFG00020024135)	PRKD1 (ENSCAFG00020024128) #17	ENSCAFG00020024124	ENSCAFG00020024122 #18	ENSCAFG00020024119 #18	SCFD1 (ENSCAFG00020024112) #19	COCH (ENSCAFG00020024104) #20	STRN3 (ENSCAFG00020024096) #21	ENSCAFG00020024090	AP4S1 (ENSCAFG00020024081) #22	HECTD1 (ENSCAFG00020023723) #23	ENSCAFG00020023694	HEATR5A (ENSCAFG00020023674) #24	ENSCAFG00020023663 #25	GPR33 (ENSCAFG00020023662) #26	ENSCAFG00020023659	ENSCAFG00020023655 #27	ENSCAFG00020023650	ENSCAFG00020023647	ARHGAP5 (ENSCAFG00020023643) #28	AKAP6 (ENSCAFG00020023612) #29	NPAS3 (ENSCAFG00020023578) #30	EGLN3 (ENSCAFG00020023576) #31	SPTSSA (ENSCAFG00020023575) #32	EAPP (ENSCAFG00020023572) #33
Dog	MODERN SPECIES	36	ENSCAFG00845008954	NOVA1 (ENSCAFG00845008983) #14	ENSCAFG00845009061	ENSCAFG00845009104	ENSCAFG00845009134	ENSCAFG00845009198 #16	ENSCAFG00845009282	ENSCAFG00845009362	ENSCAFG00845009533 #17	ENSCAFG00845009959	SCFD1 (ENSCAFG00845010038) #18	ENSCAFG00845010191	SCFD1 (ENSCAFG00845010280) #19	COCH (ENSCAFG00845010721) #20	STRN3 (ENSCAFG00845010851) #21	AP4S1 (ENSCAFG00845010937) #22	ENSCAFG00845011023	HECTD1 (ENSCAFG00845011087) #23	HEATR5A (ENSCAFG00845011579) #24	ENSCAFG00845011772	DTD2 (ENSCAFG00845011795) #25	GPR33 (ENSCAFG00845011804) #26	NUBPL (ENSCAFG00845011856) #27	ARHGAP5 (ENSCAFG00845012045) #28	AKAP6 (ENSCAFG00845012171) #29	NPAS3 (ENSCAFG00845012355) #30	EGLN3 (ENSCAFG00845012583) #31	ENSCAFG00845001464	ENSCAFG00845001492 #32	EAPP (ENSCAFG00845001503) #33	ENSCAFG00845001517 #34
Red fox	MODERN SPECIES	65	ENSVVUG00000029221	GZMB (ENSVVUG00000029236)	STXBP6 (ENSVVUG00000029357) #13	NOVA1 (ENSVVUG00000029367) #14	ENSVVUG00000029372	ENSVVUG00000029376	ENSVVUG00000029378 #16	ENSVVUG00000029380	ENSVVUG00000029381	ENSVVUG00000029384	PRKD1 (ENSVVUG00000029386) #17	G2E3 (ENSVVUG00000029399) #18	SCFD1 (ENSVVUG00000029414) #19	COCH (ENSVVUG00000029419) #20	STRN3 (ENSVVUG00000029456) #21	ENSVVUG00000029587 #22	ENSVVUG00000029588	HECTD1 (ENSVVUG00000029612) #23	HEATR5A (ENSVVUG00000029806) #24	DTD2 (ENSVVUG00000029907) #25	GPR33 (ENSVVUG00000029908) #26	ENSVVUG00000029909	NUBPL (ENSVVUG00000029910) #27	ENSVVUG00000029921	ARHGAP5 (ENSVVUG00000029922) #28	ENSVVUG00000029926	AKAP6 (ENSVVUG00000029932) #29	NPAS3 (ENSVVUG00000029947) #30	ENSVVUG00000029949 #31	ENSVVUG00000029955 #33
Canidae	ANCESTRAL SPECIES																	ENSGT00970000193421.B.h.b #22
Red fox	MODERN SPECIES	8	ENSVVUG00000009977	UHMK1 (ENSVVUG00000009990)	UAP1 (ENSVVUG00000010001)	DDR2 (ENSVVUG00000010010)	HSD17B7 (ENSVVUG00000010017)	CCDC190 (ENSVVUG00000010024)	RGS4 (ENSVVUG00000010037)	RGS5 (ENSVVUG00000010040)	NUF2 (ENSVVUG00000010059)	PBX1 (ENSVVUG00000010091)	LMX1A (ENSVVUG00000010113)	RXRG (ENSVVUG00000010121)	LRRC52 (ENSVVUG00000010146)	MGST3 (ENSVVUG00000010150)	ENSVVUG00000010155	ENSVVUG00000010169 #22	UCK2 (ENSVVUG00000010176)	FAM78B (ENSVVUG00000010186)	ENSVVUG00000010193	FAM177B (ENSVVUG00000010199)	BROX (ENSVVUG00000010206)	AIDA (ENSVVUG00000010215)	MIA3 (ENSVVUG00000010238)	TAF1A (ENSVVUG00000010281)	HHIPL2 (ENSVVUG00000010307)	ENSVVUG00000010329	ENSVVUG00000010341	DUSP10 (ENSVVUG00000010349)	HLX (ENSVVUG00000010359)	ENSVVUG00000010364	ENSVVUG00000010371
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Chiroptera	ANCESTRAL SPECIES	34	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000160678.a #16	ENSGT00390000007452	ENSGT00940000155573 #14	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Megabat	MODERN SPECIES	3690														COCH (ENSPVAG00000017157) #20	STRN3 (ENSPVAG00000017159) #21	AP4S1 (ENSPVAG00000017161) #22	HECTD1 (ENSPVAG00000017163) #23	HEATR5A (ENSPVAG00000017172) #24	DTD2 (ENSPVAG00000017175) #25	NUBPL (ENSPVAG00000017177) #27
Microchiroptera	ANCESTRAL SPECIES	29	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #13	ENSGT00940000160678.a #16	ENSGT00940000155573 #14	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Microbat	MODERN SPECIES	959	UBFD1 (ENSMLUG00000012134)	EARS2 (ENSMLUG00000012120)	GGA2 (ENSMLUG00000012106)	COG7 (ENSMLUG00000012090)	SCNN1B (ENSMLUG00000012080)	SCNN1G (ENSMLUG00000006676)	USP31 (ENSMLUG00000005833)	ENSMLUG00000028345 #16	ENSMLUG00000028038	PRKD1 (ENSMLUG00000010770) #17	ENSMLUG00000027139	G2E3 (ENSMLUG00000000531) #18	SCFD1 (ENSMLUG00000000542) #19	COCH (ENSMLUG00000011622) #20	STRN3 (ENSMLUG00000011642) #21	AP4S1 (ENSMLUG00000011671) #22	HECTD1 (ENSMLUG00000013003) #23	HEATR5A (ENSMLUG00000005763) #24	DTD2 (ENSMLUG00000005789) #25	NUBPL (ENSMLUG00000004368) #27	ARHGAP5 (ENSMLUG00000026153) #28	AKAP6 (ENSMLUG00000007138) #29	NPAS3 (ENSMLUG00000016973) #30	EGLN3 (ENSMLUG00000014716) #31	SPTSSA (ENSMLUG00000013821) #32	EAPP (ENSMLUG00000013814) #33	ENSMLUG00000030716	SNX6 (ENSMLUG00000007049) #34	BAZ1A (ENSMLUG00000006672) #36	ENSMLUG00000023750	SRP54 (ENSMLUG00000008958)
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	24	CMA1 (ENSRFEG00010000956)	ENSRFEG00010000974	ENSRFEG00010000989	ENSRFEG00010000996	ENSRFEG00010001016	STXBP6 (ENSRFEG00010001035) #13	ENSRFEG00010001065	NOVA1 (ENSRFEG00010001123) #14	ENSRFEG00010001154	PRKD1 (ENSRFEG00010001259) #17	G2E3 (ENSRFEG00010001340) #18	SCFD1 (ENSRFEG00010001418) #19	ENSRFEG00010001476	COCH (ENSRFEG00010001503) #20	STRN3 (ENSRFEG00010001558) #21	AP4S1 (ENSRFEG00010001649) #22	HECTD1 (ENSRFEG00010001711) #23	HEATR5A (ENSRFEG00010001860) #24	DTD2 (ENSRFEG00010002009) #25	GPR33 (ENSRFEG00010002026) #26	NUBPL (ENSRFEG00010002035) #27	ARHGAP5 (ENSRFEG00010002064) #28	ENSRFEG00010002109	AKAP6 (ENSRFEG00010002160) #29	NPAS3 (ENSRFEG00010002279) #30	EGLN3 (ENSRFEG00010002399) #31	SPTSSA (ENSRFEG00010002421) #32	EAPP (ENSRFEG00010002434) #33	SNX6 (ENSRFEG00010002499) #34	ENSRFEG00010002540	CFL2 (ENSRFEG00010002557) #35
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010020251	DDX11 (ENSRFEG00010020210)	FKBP4 (ENSRFEG00010020174)	ITFG2 (ENSRFEG00010020149)	NRIP2 (ENSRFEG00010020137)	TEX52 (ENSRFEG00010020115)	FOXM1 (ENSRFEG00010020006)	RHNO1 (ENSRFEG00010019970)	TULP3 (ENSRFEG00010019949)	TEAD4 (ENSRFEG00010019884)	TSPAN9 (ENSRFEG00010019826)	TSPAN11 (ENSRFEG00010019754)	PRMT8 (ENSRFEG00010019627)	CRACR2A (ENSRFEG00010019586)	PARP11 (ENSRFEG00010019492)	ENSRFEG00010019453 #22	ENSRFEG00010019429	CCND2 (ENSRFEG00010019410)	TIGAR (ENSRFEG00010019362)	FGF23 (ENSRFEG00010019321)	FGF6 (ENSRFEG00010019293)	C12orf4 (ENSRFEG00010019269)	RAD51AP1 (ENSRFEG00010019230)	DYRK4 (ENSRFEG00010019022)	AKAP3 (ENSRFEG00010018980)	NDUFA9 (ENSRFEG00010018944)	GALNT8 (ENSRFEG00010018902)	TMCC3 (ENSRFEG00010018851)	CEP83 (ENSRFEG00010018746)	PLXNC1 (ENSRFEG00010018545)	ENSRFEG00010018443
Equus	ANCESTRAL SPECIES	54							ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00950000183087.A.a.b.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00440000034918.q.b.b	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Donkey	MODERN SPECIES	11	ENSEASG00005018535	ENSEASG00005026647	ENSEASG00005030376	ENSEASG00005018648 #13	ENSEASG00005025548 #14	ENSEASG00005030567 #14	ENSEASG00005018651	ENSEASG00005018652	ENSEASG00005018653 #16	PRKD1 (ENSEASG00005000023) #17	ENSEASG00005000061	G2E3 (ENSEASG00005000139) #18	SCFD1 (ENSEASG00005000580) #19	COCH (ENSEASG00005000969) #20	STRN3 (ENSEASG00005001153) #21	AP4S1 (ENSEASG00005034840) #22	HECTD1 (ENSEASG00005002686) #23	ENSEASG00005003251	HEATR5A (ENSEASG00005003563) #24	DTD2 (ENSEASG00005028650) #25	GPR33 (ENSEASG00005005695) #26	NUBPL (ENSEASG00005005696) #27	ARHGAP5 (ENSEASG00005005703) #28	AKAP6 (ENSEASG00005005719) #29	NPAS3 (ENSEASG00005005778) #30	EGLN3 (ENSEASG00005028459) #31	SPTSSA (ENSEASG00005026736) #32	EAPP (ENSEASG00005026397) #33	ENSEASG00005009746 #34	ENSEASG00005034847 #34	CFL2 (ENSEASG00005001781) #35
Horse	MODERN SPECIES		ENSECAG00000008322	ENSECAG00000060000	ENSECAG00000059009	ENSECAG00000052415	ENSECAG00000041707	ENSECAG00000054592	STXBP6 (ENSECAG00000016835) #13	NOVA1 (ENSECAG00000037301) #14	ENSECAG00000050239	FOXG1 (ENSECAG00000030913) #16	PRKD1 (ENSECAG00000005719) #17	G2E3 (ENSECAG00000020895) #18	SCFD1 (ENSECAG00000002972) #19	COCH (ENSECAG00000021944) #20	STRN3 (ENSECAG00000010464) #21	AP4S1 (ENSECAG00000021753) #22	HECTD1 (ENSECAG00000023505) #23	ENSECAG00000031422	HEATR5A (ENSECAG00000015912) #24	DTD2 (ENSECAG00000016348) #25	GPR33 (ENSECAG00000039612) #26	NUBPL (ENSECAG00000016526) #27	ENSECAG00000058754	ENSECAG00000033699	ARHGAP5 (ENSECAG00000017271) #28	ENSECAG00000046933	ENSECAG00000048271	AKAP6 (ENSECAG00000019940) #29	ENSECAG00000044670	NPAS3 (ENSECAG00000021888) #30	EGLN3 (ENSECAG00000005086) #31
Eulipotyphla	ANCESTRAL SPECIES	276														ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23
Hedgehog	MODERN SPECIES	15598																AP4S1 (ENSEEUG00000013009) #22
Common shrew	MODERN SPECIES	100														ENSSARG00000010064 #20	STRN3 (ENSSARG00000010097) #21	AP4S1 (ENSSARG00000010130) #22	ENSSARG00000010158 #23
Atlantogenata	ANCESTRAL SPECIES	8								ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Afrotheria	ANCESTRAL SPECIES	6						ENSGT01030000234551.k.d.b.a.a.a.b.a.s	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Tenrec	MODERN SPECIES	8059															STRN3 (ENSETEG00000003611) #21	ENSETEG00000003619 #22
Afrotheria_a	ANCESTRAL SPECIES	6						ENSGT01030000234551.k.d.b.a.a.a.b.a.s	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Elephant	MODERN SPECIES	602						ENSLAFG00000028351	ENSLAFG00000027613	STXBP6 (ENSLAFG00000010204) #13	NOVA1 (ENSLAFG00000006455) #14	ENSLAFG00000000378 #16	PRKD1 (ENSLAFG00000015456) #17	G2E3 (ENSLAFG00000005684) #18	SCFD1 (ENSLAFG00000006117) #19	COCH (ENSLAFG00000012342) #20	STRN3 (ENSLAFG00000012349) #21	AP4S1 (ENSLAFG00000005485) #22	HECTD1 (ENSLAFG00000005491) #23	HEATR5A (ENSLAFG00000001023) #24	DTD2 (ENSLAFG00000018559) #25	GPR33 (ENSLAFG00000031980) #26	NUBPL (ENSLAFG00000004185) #27	ARHGAP5 (ENSLAFG00000012386) #28	AKAP6 (ENSLAFG00000000717) #29	NPAS3 (ENSLAFG00000007169) #30	EGLN3 (ENSLAFG00000007342) #31	SPTSSA (ENSLAFG00000030948) #32	EAPP (ENSLAFG00000010570) #33	SNX6 (ENSLAFG00000010573) #34	CFL2 (ENSLAFG00000010579) #35	BAZ1A (ENSLAFG00000010581) #36	ENSLAFG00000025618
Hyrax	MODERN SPECIES	6799															STRN3 (ENSPCAG00000008359) #21	AP4S1 (ENSPCAG00000008456) #22	HECTD1 (ENSPCAG00000008519) #23
Xenarthra	ANCESTRAL SPECIES																	ENSGT00970000193421.B #22
Armadillo	MODERN SPECIES	2364						ENSDNOG00000036802	TMPRSS11F (ENSDNOG00000017203)	ENSDNOG00000046486	TMPRSS11A (ENSDNOG00000024478)	TMPRSS11D (ENSDNOG00000016095)	ENSDNOG00000045741	GNRHR (ENSDNOG00000016451)	UBA6 (ENSDNOG00000008434)	STAP1 (ENSDNOG00000048912)	CENPC (ENSDNOG00000002935)	ENSDNOG00000044365 #22	ENSDNOG00000042413	ENSDNOG00000001439	ENSDNOG00000040187
Sloth	MODERN SPECIES	286																AP4S1 (ENSCHOG00000013301) #22
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000005052	ENSGT00390000001830.i.a	ENSGT00710000106769	ENSGT00940000158774	ENSGT00390000009196	ENSGT00390000008198	ENSGT01030000234551.k.d.b.b	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000019406	ENSGT00510000047812	ENSGT00940000157545	ENSGT00390000009277	ENSGT00940000160700	ENSGT00390000011613
Opossum	MODERN SPECIES		ENSMODG00000038001	NOVA1 (ENSMODG00000049692) #14	ENSMODG00000048709	FOXG1 (ENSMODG00000017542) #16	ENSMODG00000043570	ENSMODG00000045515	ENSMODG00000029330	PRKD1 (ENSMODG00000017552) #17	ENSMODG00000028551	G2E3 (ENSMODG00000017557) #18	SCFD1 (ENSMODG00000017563) #19	COCH (ENSMODG00000017567) #20	ENSMODG00000017575	STRN3 (ENSMODG00000017571) #21	ENSMODG00000048426	AP4S1 (ENSMODG00000017579) #22	HECTD1 (ENSMODG00000017590) #23	HEATR5A (ENSMODG00000017600) #24	DTD2 (ENSMODG00000045920) #25	GPR33 (ENSMODG00000050260) #26	ENSMODG00000024099	NUBPL (ENSMODG00000024100) #27	ARHGAP5 (ENSMODG00000017613) #28	AKAP6 (ENSMODG00000017618) #29	NPAS3 (ENSMODG00000017620) #30	ENSMODG00000042896	EGLN3 (ENSMODG00000017625) #31	SQOR (ENSMODG00000017627)	BLOC1S6 (ENSMODG00000017628)	SLC30A4 (ENSMODG00000017630)	ENSMODG00000042102
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000001830.i.a	ENSGT00710000106769	ENSGT00940000158774	ENSGT00390000009196	ENSGT00390000008198	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000182945.b.b.e.b	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000019406	ENSGT00510000047812	ENSGT00940000157545	ENSGT00390000009277	ENSGT00940000160700
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000003512	ENSSHAG00000003236	ENSSHAG00000029021	ENSSHAG00000004157	ENSSHAG00000002433	ENSSHAG00000030234	ENSSHAG00000005592 #13	NOVA1 (ENSSHAG00000031756) #14	FOXG1 (ENSSHAG00000021849) #16	PRKD1 (ENSSHAG00000024235) #17	G2E3 (ENSSHAG00000031633) #18	SCFD1 (ENSSHAG00000014800) #19	ENSSHAG00000026243	COCH (ENSSHAG00000014060) #20	STRN3 (ENSSHAG00000013827) #21	AP4S1 (ENSSHAG00000013484) #22	HECTD1 (ENSSHAG00000013045) #23	HEATR5A (ENSSHAG00000011970) #24	DTD2 (ENSSHAG00000024859) #25	GPR33 (ENSSHAG00000011325) #26	ENSSHAG00000028480	NUBPL (ENSSHAG00000008500) #27	ARHGAP5 (ENSSHAG00000001822) #28	AKAP6 (ENSSHAG00000013667) #29	NPAS3 (ENSSHAG00000025296) #30	ENSSHAG00000012920 #31	ENSSHAG00000008981	SLC30A4 (ENSSHAG00000025011)	C15orf48 (ENSSHAG00000006212)	SPATA5L1 (ENSSHAG00000005783)	GATM (ENSSHAG00000004129)
Diprotodontia	ANCESTRAL SPECIES		ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000001830.i.a	ENSGT00710000106769	ENSGT00940000158774	ENSGT00390000009196	ENSGT00390000008198	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000182945.b.b.e.b	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000019406	ENSGT00510000047812	ENSGT00940000157545	ENSGT00390000009277	ENSGT00940000160700
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00910000144260	ENSGT00390000005052	ENSGT00390000001830.i.a	ENSGT00710000106769	ENSGT00940000158774	ENSGT00390000009196	ENSGT00390000008198	ENSGT00940000156499 #13	ENSGT00940000155573 #14	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000182945.b.b.e.b	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000019406	ENSGT00510000047812	ENSGT00940000157545	ENSGT00390000009277.bb	ENSGT00940000160700
koala	MODERN SPECIES	101	TRIP11 (ENSPCIG00000011383)	FBLN5 (ENSPCIG00000011365)	TC2N (ENSPCIG00000011360)	ENSPCIG00000011356	ENSPCIG00000011351	STXBP6 (ENSPCIG00000011348) #13	NOVA1 (ENSPCIG00000024683) #14	ENSPCIG00000016114	ENSPCIG00000035834 #16	ENSPCIG00000035249	PRKD1 (ENSPCIG00000024460) #17	G2E3 (ENSPCIG00000025422) #18	SCFD1 (ENSPCIG00000025457) #19	COCH (ENSPCIG00000023777) #20	STRN3 (ENSPCIG00000023770) #21	AP4S1 (ENSPCIG00000035487) #22	ENSPCIG00000023758	HECTD1 (ENSPCIG00000023741) #23	HEATR5A (ENSPCIG00000023713) #24	DTD2 (ENSPCIG00000023706) #25	GPR33 (ENSPCIG00000023701) #26	ENSPCIG00000024335	NUBPL (ENSPCIG00000024329) #27	ARHGAP5 (ENSPCIG00000024338) #28	ENSPCIG00000018432 #29
Common wonbat	MODERN SPECIES	1031	ATXN3 (ENSVURG00010000231)	TRIP11 (ENSVURG00010000541)	ENSVURG00010000613	TC2N (ENSVURG00010000637)	ENSVURG00010000663	ENSVURG00010000690	ENSVURG00010000770	NOVA1 (ENSVURG00010000843) #14	ENSVURG00010000899	PRKD1 (ENSVURG00010000998) #17	G2E3 (ENSVURG00010001188) #18	ENSVURG00010001211	SCFD1 (ENSVURG00010001249) #19	COCH (ENSVURG00010001363) #20	STRN3 (ENSVURG00010001455) #21	AP4S1 (ENSVURG00010001627) #22	HECTD1 (ENSVURG00010001700) #23	HEATR5A (ENSVURG00010001756) #24	DTD2 (ENSVURG00010001842) #25	GPR33 (ENSVURG00010001847) #26	NUBPL (ENSVURG00010001936) #27	ENSVURG00010002007	ARHGAP5 (ENSVURG00010002087) #28	AKAP6 (ENSVURG00010002193) #29	NPAS3 (ENSVURG00010002315) #30	EGLN3 (ENSVURG00010002628) #31	ENSVURG00010002650	SQOR (ENSVURG00010002691)	BLOC1S6 (ENSVURG00010002717)	SLC30A4 (ENSVURG00010002727)	ENSVURG00010002749
Platypus	MODERN SPECIES	5	FBXO33 (ENSOANG00000049571)	ENSOANG00000014010	ENSOANG00000039934	PNN (ENSOANG00000046087)	TRAPPC6B (ENSOANG00000043135)	GEMIN2 (ENSOANG00000014013)	SEC23A (ENSOANG00000014007)	STXBP6 (ENSOANG00000014014) #13	NOVA1 (ENSOANG00000014015) #14	FOXG1 (ENSOANG00000014017) #16	PRKD1 (ENSOANG00000014018) #17	G2E3 (ENSOANG00000014019) #18	SCFD1 (ENSOANG00000014020) #19	COCH (ENSOANG00000014025) #20	STRN3 (ENSOANG00000014029) #21	AP4S1 (ENSOANG00000039192) #22	HECTD1 (ENSOANG00000014033) #23	HEATR5A (ENSOANG00000014036) #24	DTD2 (ENSOANG00000014038) #25	NUBPL (ENSOANG00000014034) #27	ARHGAP5 (ENSOANG00000014039) #28	AKAP6 (ENSOANG00000014040) #29	NPAS3 (ENSOANG00000014044) #30	ENSOANG00000049968	EGLN3 (ENSOANG00000037294) #31	SPTSSA (ENSOANG00000043145) #32	EAPP (ENSOANG00000049496) #33	SNX6 (ENSOANG00000042198) #34	BAZ1A (ENSOANG00000014049) #36	ENSOANG00000014050	SRP54 (ENSOANG00000041370)