Murinae	ANCESTRAL SPECIES	8	ENSGT00390000010852	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus	ANCESTRAL SPECIES	10	ENSGT00390000010852	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
spretus	MODERN SPECIES	3	Nrcam (MGP_SPRETEiJ_G0018568) #7	Stxbp6 (MGP_SPRETEiJ_G0018569) #8	Nova1 (MGP_SPRETEiJ_G0018570) #9	MGP_SPRETEiJ_G0018571 #10	MGP_SPRETEiJ_G0018572 #11	Foxg1 (MGP_SPRETEiJ_G0018573) #12	MGP_SPRETEiJ_G0018574 #13	MGP_SPRETEiJ_G0018575 #14	Prkd1 (MGP_SPRETEiJ_G0018576) #15	MGP_SPRETEiJ_G0018577 #16	MGP_SPRETEiJ_G0018578 #17	G2e3 (MGP_SPRETEiJ_G0018579) #18	Scfd1 (MGP_SPRETEiJ_G0018580) #19	Coch (MGP_SPRETEiJ_G0018581) #20	Strn3 (MGP_SPRETEiJ_G0018582) #21	Ap4s1 (MGP_SPRETEiJ_G0018583) #22	Hectd1 (MGP_SPRETEiJ_G0018584) #23	Heatr5a (MGP_SPRETEiJ_G0018585) #24	Dtd2 (MGP_SPRETEiJ_G0018586) #25	Gpr33 (MGP_SPRETEiJ_G0018587) #26	Nubpl (MGP_SPRETEiJ_G0018588) #27	Arhgap5 (MGP_SPRETEiJ_G0018589) #28	Akap6 (MGP_SPRETEiJ_G0018590) #29	Npas3 (MGP_SPRETEiJ_G0018591) #30	Egln3 (MGP_SPRETEiJ_G0018592) #31	Sptssa (MGP_SPRETEiJ_G0018593) #32	Eapp (MGP_SPRETEiJ_G0018594) #33	Snx6 (MGP_SPRETEiJ_G0018595) #34	Cfl2 (MGP_SPRETEiJ_G0018596) #35	Baz1a (MGP_SPRETEiJ_G0018597) #36	MGP_SPRETEiJ_G0018598 #37
Steppe mouse	MODERN SPECIES	3314								ENSMSIG00000002590	ENSMSIG00000002603	ENSMSIG00000002627	ENSMSIG00000002727	G2e3 (ENSMSIG00000002770) #18	Scfd1 (ENSMSIG00000003039) #19	Coch (ENSMSIG00000003151) #20	Strn3 (ENSMSIG00000003232) #21	Ap4s1 (ENSMSIG00000003653) #22	Hectd1 (ENSMSIG00000003683) #23	ENSMSIG00000003791	Heatr5a (ENSMSIG00000003804) #24	Dtd2 (ENSMSIG00000003964) #25	Gpr33 (ENSMSIG00000003989) #26	Nubpl (ENSMSIG00000004004) #27	Arhgap5 (ENSMSIG00000004050) #28	Akap6 (ENSMSIG00000004164) #29	Npas3 (ENSMSIG00000004473) #30	ENSMSIG00000004706	ENSMSIG00000004720	Egln3 (ENSMSIG00000004731) #31	ENSMSIG00000004766
Mouse	MODERN SPECIES	3	Dock4 (ENSMUSG00000035954)	Immp2l (ENSMUSG00000056899)	Lrrn3 (ENSMUSG00000036295)	Dnajb9 (ENSMUSG00000014905)	Pnpla8 (ENSMUSG00000036257)	Nrcam (ENSMUSG00000020598) #7	Stxbp6 (ENSMUSG00000046314) #8	Nova1 (ENSMUSG00000021047) #9	Foxg1 (ENSMUSG00000020950) #13	Gm43517 (ENSMUSG00000089922)	Prkd1 (ENSMUSG00000002688) #15	G2e3 (ENSMUSG00000035293) #18	Scfd1 (ENSMUSG00000020952) #19	Coch (ENSMUSG00000020953) #20	Strn3 (ENSMUSG00000020954) #21	Ap4s1 (ENSMUSG00000020955) #22	Hectd1 (ENSMUSG00000035247) #23	Heatr5a (ENSMUSG00000035181) #24	Dtd2 (ENSMUSG00000020956) #25	Gpr33 (ENSMUSG00000035148) #26	Nubpl (ENSMUSG00000035142) #27	Arhgap5 (ENSMUSG00000035133) #28	Akap6 (ENSMUSG00000061603) #29	Npas3 (ENSMUSG00000021010) #30	Egln3 (ENSMUSG00000035105) #31	Sptssa (ENSMUSG00000044408) #32	Eapp (ENSMUSG00000054302) #33	Snx6 (ENSMUSG00000005656) #34	Cfl2 (ENSMUSG00000062929) #35	Baz1a (ENSMUSG00000035021) #36	2700097O09Rik (ENSMUSG00000062198)
Ryukyu mouse	MODERN SPECIES	3	Immp2l (MGP_CAROLIEiJ_G0017722)	Lrrn3 (MGP_CAROLIEiJ_G0017723)	Dnajb9 (MGP_CAROLIEiJ_G0017724)	Pnpla8 (MGP_CAROLIEiJ_G0017725)	Nrcam (MGP_CAROLIEiJ_G0017726) #7	Stxbp6 (MGP_CAROLIEiJ_G0017727) #8	Nova1 (MGP_CAROLIEiJ_G0017728) #9	Foxg1 (MGP_CAROLIEiJ_G0017729) #13	MGP_CAROLIEiJ_G0017730 #13	MGP_CAROLIEiJ_G0017731 #14	Prkd1 (MGP_CAROLIEiJ_G0017732) #15	G2e3 (MGP_CAROLIEiJ_G0017733) #18	Scfd1 (MGP_CAROLIEiJ_G0017734) #19	Coch (MGP_CAROLIEiJ_G0017735) #20	Strn3 (MGP_CAROLIEiJ_G0017736) #21	Ap4s1 (MGP_CAROLIEiJ_G0017737) #22	Hectd1 (MGP_CAROLIEiJ_G0017738) #23	Heatr5a (MGP_CAROLIEiJ_G0017739) #24	Dtd2 (MGP_CAROLIEiJ_G0017740) #25	Gpr33 (MGP_CAROLIEiJ_G0017741) #26	Nubpl (MGP_CAROLIEiJ_G0017742) #27	Arhgap5 (MGP_CAROLIEiJ_G0017743) #28	Akap6 (MGP_CAROLIEiJ_G0017744) #29	Npas3 (MGP_CAROLIEiJ_G0017745) #30	Egln3 (MGP_CAROLIEiJ_G0017746) #31	Sptssa (MGP_CAROLIEiJ_G0017747) #32	Eapp (MGP_CAROLIEiJ_G0017748) #33	Snx6 (MGP_CAROLIEiJ_G0017749) #34	Cfl2 (MGP_CAROLIEiJ_G0017750) #35	Baz1a (MGP_CAROLIEiJ_G0017751) #36	MGP_CAROLIEiJ_G0017752 #37
Shrew mouse	MODERN SPECIES	20	Dock4 (MGP_PahariEiJ_G0029478)	Immp2l (MGP_PahariEiJ_G0029479)	Lrrn3 (MGP_PahariEiJ_G0029480)	Dnajb9 (MGP_PahariEiJ_G0029481)	Pnpla8 (MGP_PahariEiJ_G0029482)	Nrcam (MGP_PahariEiJ_G0029483) #7	Stxbp6 (MGP_PahariEiJ_G0029484) #8	Nova1 (MGP_PahariEiJ_G0029485) #9	Foxg1 (MGP_PahariEiJ_G0029486) #13	MGP_PahariEiJ_G0029487 #13	Prkd1 (MGP_PahariEiJ_G0029488) #15	G2e3 (MGP_PahariEiJ_G0029489) #18	Scfd1 (MGP_PahariEiJ_G0029490) #19	Coch (MGP_PahariEiJ_G0029491) #20	Strn3 (MGP_PahariEiJ_G0029492) #21	Ap4s1 (MGP_PahariEiJ_G0029493) #22	Hectd1 (MGP_PahariEiJ_G0029494) #23	Heatr5a (MGP_PahariEiJ_G0029495) #24	Dtd2 (MGP_PahariEiJ_G0029496) #25	Gpr33 (MGP_PahariEiJ_G0029497) #26	Nubpl (MGP_PahariEiJ_G0029498) #27	Arhgap5 (MGP_PahariEiJ_G0029499) #28	Akap6 (MGP_PahariEiJ_G0029500) #29	Npas3 (MGP_PahariEiJ_G0029501) #30	Egln3 (MGP_PahariEiJ_G0029502) #31	Sptssa (MGP_PahariEiJ_G0029503) #32	Eapp (MGP_PahariEiJ_G0029504) #33	Snx6 (MGP_PahariEiJ_G0029505) #34	Cfl2 (MGP_PahariEiJ_G0029506) #35	Baz1a (MGP_PahariEiJ_G0029507) #36	MGP_PahariEiJ_G0029508 #37
Rat	MODERN SPECIES	16	Dnajb9 (ENSRNOG00000004006)	ENSRNOG00000064508	Pnpla8 (ENSRNOG00000039091)	Nrcam (ENSRNOG00000004067) #7	Stxbp6 (ENSRNOG00000004198) #8	Nova1 (ENSRNOG00000031440) #9	ENSRNOG00000068318	RGD1559629 (ENSRNOG00000031317)	Foxg1 (ENSRNOG00000047891) #13	Prkd1 (ENSRNOG00000004165) #15	ENSRNOG00000066628	G2e3 (ENSRNOG00000004232) #18	Scfd1 (ENSRNOG00000031203) #19	Coch (ENSRNOG00000005286) #20	Strn3 (ENSRNOG00000060335) #21	Ap4s1 (ENSRNOG00000005765) #22	Hectd1 (ENSRNOG00000006905) #23	Heatr5a (ENSRNOG00000006483) #24	Dtd2 (ENSRNOG00000006727) #25	Gpr33-ps1 (ENSRNOG00000038990) #26	Nubpl (ENSRNOG00000027444) #27	ENSRNOG00000070950	Arhgap5 (ENSRNOG00000004696) #28	Akap6 (ENSRNOG00000004841) #29	Npas3 (ENSRNOG00000068162) #30	ENSRNOG00000066295	Egln3 (ENSRNOG00000005053) #31	Timm23b (ENSRNOG00000031285)	Rps10 (ENSRNOG00000066637)	Sptssa (ENSRNOG00000004292) #32	Eapp (ENSRNOG00000004509) #33