Glires	ANCESTRAL SPECIES	12	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Rodentia	ANCESTRAL SPECIES	3	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Rodentia_B	ANCESTRAL SPECIES	7	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Myomorpha	ANCESTRAL SPECIES	7	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Muroidea	ANCESTRAL SPECIES	54								ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Muroidea_A	ANCESTRAL SPECIES	15	ENSGT00390000010852	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Murinae	ANCESTRAL SPECIES	8	ENSGT00390000010852	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus	ANCESTRAL SPECIES	10	ENSGT00390000010852	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000155659	ENSGT00550000075044	ENSGT00940000160513	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT01100000267143 #14	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
spretus	MODERN SPECIES	3	Nrcam (MGP_SPRETEiJ_G0018568) #7	Stxbp6 (MGP_SPRETEiJ_G0018569) #8	Nova1 (MGP_SPRETEiJ_G0018570) #9	MGP_SPRETEiJ_G0018571 #10	MGP_SPRETEiJ_G0018572 #11	Foxg1 (MGP_SPRETEiJ_G0018573) #12	MGP_SPRETEiJ_G0018574 #13	MGP_SPRETEiJ_G0018575 #14	Prkd1 (MGP_SPRETEiJ_G0018576) #15	MGP_SPRETEiJ_G0018577 #16	MGP_SPRETEiJ_G0018578 #17	G2e3 (MGP_SPRETEiJ_G0018579) #18	Scfd1 (MGP_SPRETEiJ_G0018580) #19	Coch (MGP_SPRETEiJ_G0018581) #20	Strn3 (MGP_SPRETEiJ_G0018582) #21	Ap4s1 (MGP_SPRETEiJ_G0018583) #22	Hectd1 (MGP_SPRETEiJ_G0018584) #23	Heatr5a (MGP_SPRETEiJ_G0018585) #24	Dtd2 (MGP_SPRETEiJ_G0018586) #25	Gpr33 (MGP_SPRETEiJ_G0018587) #26	Nubpl (MGP_SPRETEiJ_G0018588) #27	Arhgap5 (MGP_SPRETEiJ_G0018589) #28	Akap6 (MGP_SPRETEiJ_G0018590) #29	Npas3 (MGP_SPRETEiJ_G0018591) #30	Egln3 (MGP_SPRETEiJ_G0018592) #31	Sptssa (MGP_SPRETEiJ_G0018593) #32	Eapp (MGP_SPRETEiJ_G0018594) #33	Snx6 (MGP_SPRETEiJ_G0018595) #34	Cfl2 (MGP_SPRETEiJ_G0018596) #35	Baz1a (MGP_SPRETEiJ_G0018597) #36	MGP_SPRETEiJ_G0018598 #37
Steppe mouse	MODERN SPECIES	3314								ENSMSIG00000002590	ENSMSIG00000002603	ENSMSIG00000002627	ENSMSIG00000002727	G2e3 (ENSMSIG00000002770) #18	Scfd1 (ENSMSIG00000003039) #19	Coch (ENSMSIG00000003151) #20	Strn3 (ENSMSIG00000003232) #21	Ap4s1 (ENSMSIG00000003653) #22	Hectd1 (ENSMSIG00000003683) #23	ENSMSIG00000003791	Heatr5a (ENSMSIG00000003804) #24	Dtd2 (ENSMSIG00000003964) #25	Gpr33 (ENSMSIG00000003989) #26	Nubpl (ENSMSIG00000004004) #27	Arhgap5 (ENSMSIG00000004050) #28	Akap6 (ENSMSIG00000004164) #29	Npas3 (ENSMSIG00000004473) #30	ENSMSIG00000004706	ENSMSIG00000004720	Egln3 (ENSMSIG00000004731) #31	ENSMSIG00000004766
Mouse	MODERN SPECIES	3	Dock4 (ENSMUSG00000035954)	Immp2l (ENSMUSG00000056899)	Lrrn3 (ENSMUSG00000036295)	Dnajb9 (ENSMUSG00000014905)	Pnpla8 (ENSMUSG00000036257)	Nrcam (ENSMUSG00000020598) #7	Stxbp6 (ENSMUSG00000046314) #8	Nova1 (ENSMUSG00000021047) #9	Foxg1 (ENSMUSG00000020950) #13	Gm43517 (ENSMUSG00000089922)	Prkd1 (ENSMUSG00000002688) #15	G2e3 (ENSMUSG00000035293) #18	Scfd1 (ENSMUSG00000020952) #19	Coch (ENSMUSG00000020953) #20	Strn3 (ENSMUSG00000020954) #21	Ap4s1 (ENSMUSG00000020955) #22	Hectd1 (ENSMUSG00000035247) #23	Heatr5a (ENSMUSG00000035181) #24	Dtd2 (ENSMUSG00000020956) #25	Gpr33 (ENSMUSG00000035148) #26	Nubpl (ENSMUSG00000035142) #27	Arhgap5 (ENSMUSG00000035133) #28	Akap6 (ENSMUSG00000061603) #29	Npas3 (ENSMUSG00000021010) #30	Egln3 (ENSMUSG00000035105) #31	Sptssa (ENSMUSG00000044408) #32	Eapp (ENSMUSG00000054302) #33	Snx6 (ENSMUSG00000005656) #34	Cfl2 (ENSMUSG00000062929) #35	Baz1a (ENSMUSG00000035021) #36	2700097O09Rik (ENSMUSG00000062198)
Ryukyu mouse	MODERN SPECIES	3	Immp2l (MGP_CAROLIEiJ_G0017722)	Lrrn3 (MGP_CAROLIEiJ_G0017723)	Dnajb9 (MGP_CAROLIEiJ_G0017724)	Pnpla8 (MGP_CAROLIEiJ_G0017725)	Nrcam (MGP_CAROLIEiJ_G0017726) #7	Stxbp6 (MGP_CAROLIEiJ_G0017727) #8	Nova1 (MGP_CAROLIEiJ_G0017728) #9	Foxg1 (MGP_CAROLIEiJ_G0017729) #13	MGP_CAROLIEiJ_G0017730 #13	MGP_CAROLIEiJ_G0017731 #14	Prkd1 (MGP_CAROLIEiJ_G0017732) #15	G2e3 (MGP_CAROLIEiJ_G0017733) #18	Scfd1 (MGP_CAROLIEiJ_G0017734) #19	Coch (MGP_CAROLIEiJ_G0017735) #20	Strn3 (MGP_CAROLIEiJ_G0017736) #21	Ap4s1 (MGP_CAROLIEiJ_G0017737) #22	Hectd1 (MGP_CAROLIEiJ_G0017738) #23	Heatr5a (MGP_CAROLIEiJ_G0017739) #24	Dtd2 (MGP_CAROLIEiJ_G0017740) #25	Gpr33 (MGP_CAROLIEiJ_G0017741) #26	Nubpl (MGP_CAROLIEiJ_G0017742) #27	Arhgap5 (MGP_CAROLIEiJ_G0017743) #28	Akap6 (MGP_CAROLIEiJ_G0017744) #29	Npas3 (MGP_CAROLIEiJ_G0017745) #30	Egln3 (MGP_CAROLIEiJ_G0017746) #31	Sptssa (MGP_CAROLIEiJ_G0017747) #32	Eapp (MGP_CAROLIEiJ_G0017748) #33	Snx6 (MGP_CAROLIEiJ_G0017749) #34	Cfl2 (MGP_CAROLIEiJ_G0017750) #35	Baz1a (MGP_CAROLIEiJ_G0017751) #36	MGP_CAROLIEiJ_G0017752 #37
Shrew mouse	MODERN SPECIES	20	Dock4 (MGP_PahariEiJ_G0029478)	Immp2l (MGP_PahariEiJ_G0029479)	Lrrn3 (MGP_PahariEiJ_G0029480)	Dnajb9 (MGP_PahariEiJ_G0029481)	Pnpla8 (MGP_PahariEiJ_G0029482)	Nrcam (MGP_PahariEiJ_G0029483) #7	Stxbp6 (MGP_PahariEiJ_G0029484) #8	Nova1 (MGP_PahariEiJ_G0029485) #9	Foxg1 (MGP_PahariEiJ_G0029486) #13	MGP_PahariEiJ_G0029487 #13	Prkd1 (MGP_PahariEiJ_G0029488) #15	G2e3 (MGP_PahariEiJ_G0029489) #18	Scfd1 (MGP_PahariEiJ_G0029490) #19	Coch (MGP_PahariEiJ_G0029491) #20	Strn3 (MGP_PahariEiJ_G0029492) #21	Ap4s1 (MGP_PahariEiJ_G0029493) #22	Hectd1 (MGP_PahariEiJ_G0029494) #23	Heatr5a (MGP_PahariEiJ_G0029495) #24	Dtd2 (MGP_PahariEiJ_G0029496) #25	Gpr33 (MGP_PahariEiJ_G0029497) #26	Nubpl (MGP_PahariEiJ_G0029498) #27	Arhgap5 (MGP_PahariEiJ_G0029499) #28	Akap6 (MGP_PahariEiJ_G0029500) #29	Npas3 (MGP_PahariEiJ_G0029501) #30	Egln3 (MGP_PahariEiJ_G0029502) #31	Sptssa (MGP_PahariEiJ_G0029503) #32	Eapp (MGP_PahariEiJ_G0029504) #33	Snx6 (MGP_PahariEiJ_G0029505) #34	Cfl2 (MGP_PahariEiJ_G0029506) #35	Baz1a (MGP_PahariEiJ_G0029507) #36	MGP_PahariEiJ_G0029508 #37
Rat	MODERN SPECIES	16	Dnajb9 (ENSRNOG00000004006)	ENSRNOG00000064508	Pnpla8 (ENSRNOG00000039091)	Nrcam (ENSRNOG00000004067) #7	Stxbp6 (ENSRNOG00000004198) #8	Nova1 (ENSRNOG00000031440) #9	ENSRNOG00000068318	RGD1559629 (ENSRNOG00000031317)	Foxg1 (ENSRNOG00000047891) #13	Prkd1 (ENSRNOG00000004165) #15	ENSRNOG00000066628	G2e3 (ENSRNOG00000004232) #18	Scfd1 (ENSRNOG00000031203) #19	Coch (ENSRNOG00000005286) #20	Strn3 (ENSRNOG00000060335) #21	Ap4s1 (ENSRNOG00000005765) #22	Hectd1 (ENSRNOG00000006905) #23	Heatr5a (ENSRNOG00000006483) #24	Dtd2 (ENSRNOG00000006727) #25	Gpr33-ps1 (ENSRNOG00000038990) #26	Nubpl (ENSRNOG00000027444) #27	ENSRNOG00000070950	Arhgap5 (ENSRNOG00000004696) #28	Akap6 (ENSRNOG00000004841) #29	Npas3 (ENSRNOG00000068162) #30	ENSRNOG00000066295	Egln3 (ENSRNOG00000005053) #31	Timm23b (ENSRNOG00000031285)	Rps10 (ENSRNOG00000066637)	Sptssa (ENSRNOG00000004292) #32	Eapp (ENSRNOG00000004509) #33
Cricetidae	ANCESTRAL SPECIES	17	ENSGT00390000010852	ENSGT00940000155659	ENSGT00940000160513	ENSGT00940000164174	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Cricetidae_B	ANCESTRAL SPECIES	44	ENSGT00390000010852	ENSGT00940000155659	ENSGT00940000160513	ENSGT00550000075044	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00940000172098	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Northern American deer mouse	MODERN SPECIES	5	ENSPEMG00000030494	Dnajb9 (ENSPEMG00000025224)	Pnpla8 (ENSPEMG00000013308)	Nrcam (ENSPEMG00000000666) #7	ENSPEMG00000008750	Stxbp6 (ENSPEMG00000006826) #8	Nova1 (ENSPEMG00000006503) #9	Foxg1 (ENSPEMG00000014163) #13	ENSPEMG00000011512	ENSPEMG00000029110	Prkd1 (ENSPEMG00000011695) #15	G2e3 (ENSPEMG00000014724) #18	Scfd1 (ENSPEMG00000013333) #19	Coch (ENSPEMG00000014561) #20	Strn3 (ENSPEMG00000018694) #21	Ap4s1 (ENSPEMG00000028602) #22	Hectd1 (ENSPEMG00000011192) #23	Heatr5a (ENSPEMG00000014455) #24	Dtd2 (ENSPEMG00000020439) #25	Gpr33 (ENSPEMG00000015422) #26	Nubpl (ENSPEMG00000008972) #27	Arhgap5 (ENSPEMG00000000871) #28	Akap6 (ENSPEMG00000012708) #29	Npas3 (ENSPEMG00000012109) #30	Egln3 (ENSPEMG00000005061) #31	Sptssa (ENSPEMG00000030128) #32	ENSPEMG00000017758	Snx6 (ENSPEMG00000021989) #34	ENSPEMG00000028812 #34	Cfl2 (ENSPEMG00000007781) #35	Baz1a (ENSPEMG00000014114) #36
Prairie vole	MODERN SPECIES		Zfp639 (ENSMOCG00000020301)	Kcnmb3 (ENSMOCG00000016804)	Pik3ca (ENSMOCG00000013980)	Zmat3 (ENSMOCG00000018844)	Kcnmb2 (ENSMOCG00000017078)	Egfem1 (ENSMOCG00000018732)	Mecom (ENSMOCG00000021596)	ENSMOCG00000020206	Actrt3 (ENSMOCG00000015666)	Mynn (ENSMOCG00000015696)	Lrrc34 (ENSMOCG00000016121)	ENSMOCG00000005957	Lrriq4 (ENSMOCG00000004550)	Coch (ENSMOCG00000019723) #20	ENSMOCG00000012615 #21	Ap4s1 (ENSMOCG00000007389) #22	Hectd1 (ENSMOCG00000014999) #23	Heatr5a (ENSMOCG00000022578) #24	Dtd2 (ENSMOCG00000013778) #25	Nubpl (ENSMOCG00000014184) #27	Arhgap5 (ENSMOCG00000004835) #28	Akap6 (ENSMOCG00000011185) #29	Npas3 (ENSMOCG00000019190) #30	Egln3 (ENSMOCG00000012694) #31	ENSMOCG00000005461	Sptssa (ENSMOCG00000012586) #32	ENSMOCG00000015865	ENSMOCG00000010297	Snx6 (ENSMOCG00000005706) #34	Cfl2 (ENSMOCG00000001143) #35	ENSMOCG00000021225 #36
Cricetinae	ANCESTRAL SPECIES	11	ENSGT00390000010852	ENSGT00940000155659	ENSGT00940000160513	ENSGT00550000075044	ENSGT00940000156246	ENSGT00940000154738.a	ENSGT00940000155419 #7	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001009365	DNAJB9 (ENSCGRG00001006614)	Pnpla8 (ENSCGRG00001002943)	Nrcam (ENSCGRG00001023691) #7	ENSCGRG00001015987	Stxbp6 (ENSCGRG00001016560) #8	ENSCGRG00001015898	Nova1 (ENSCGRG00001024030) #9	ENSCGRG00001023108	Foxg1 (ENSCGRG00001009864) #13	Prkd1 (ENSCGRG00001019739) #15	G2e3 (ENSCGRG00001015112) #18	Scfd1 (ENSCGRG00001013495) #19	Coch (ENSCGRG00001010363) #20	Strn3 (ENSCGRG00001000550) #21	Ap4s1 (ENSCGRG00001023362) #22	Hectd1 (ENSCGRG00001024884) #23	ENSCGRG00001024436	Heatr5a (ENSCGRG00001017067) #24	Dtd2 (ENSCGRG00001015902) #25	Gpr33 (ENSCGRG00001011244) #26	ENSCGRG00001006641	Nubpl (ENSCGRG00001004006) #27	Arhgap5 (ENSCGRG00001002196) #28	ENSCGRG00001009818	Akap6 (ENSCGRG00001015059) #29	Npas3 (ENSCGRG00001014006) #30	Egln3 (ENSCGRG00001011120) #31	Sptssa (ENSCGRG00001009767) #32	Eapp (ENSCGRG00001019760) #33	Snx6 (ENSCGRG00001015718) #34
Golden Hamster	MODERN SPECIES	678	Tmem208 (ENSMAUG00000019912)	Fbxl9 (ENSMAUG00000020647)	Elmo3 (ENSMAUG00000018747)	ENSMAUG00000021932	Pnpla8 (ENSMAUG00000018550)	ENSMAUG00000004823 #7	ENSMAUG00000012524 #7	Stxbp6 (ENSMAUG00000009926) #8	ENSMAUG00000000995 #9	Foxg1 (ENSMAUG00000019070) #13	Prkd1 (ENSMAUG00000022213) #15	G2e3 (ENSMAUG00000021191) #18	Scfd1 (ENSMAUG00000003557) #19	ENSMAUG00000013698 #20	Strn3 (ENSMAUG00000021272) #21	ENSMAUG00000021341 #22	Hectd1 (ENSMAUG00000004033) #23	Heatr5a (ENSMAUG00000009777) #24	ENSMAUG00000013425	Dtd2 (ENSMAUG00000016991) #25	ENSMAUG00000014362 #26	Nubpl (ENSMAUG00000016658) #27
Upper Galilee mountains blind mole rat	MODERN SPECIES	1046												G2e3 (ENSNGAG00000005306) #18	Scfd1 (ENSNGAG00000016247) #19	Coch (ENSNGAG00000000675) #20	Strn3 (ENSNGAG00000009581) #21	Ap4s1 (ENSNGAG00000016226) #22	Hectd1 (ENSNGAG00000020429) #23	Heatr5a (ENSNGAG00000019811) #24	ENSNGAG00000011221
Lesser Egyptian jerboa	MODERN SPECIES	86	Sdr39u1 (ENSJJAG00000019692)	ENSJJAG00000004128 ##22	Cma1 (ENSJJAG00000014442)	ENSJJAG00000016083	Ctsg (ENSJJAG00000009878)	ENSJJAG00000012054	ENSJJAG00000012531	ENSJJAG00000015223	ENSJJAG00000001002	Nova1 (ENSJJAG00000012915) #9	ENSJJAG00000001174	ENSJJAG00000001269 #13	G2e3 (ENSJJAG00000014439) #18	Coch (ENSJJAG00000019025) #20	Strn3 (ENSJJAG00000019703) #21	Ap4s1 (ENSJJAG00000022804) #22	Hectd1 (ENSJJAG00000001344) #23	Heatr5a (ENSJJAG00000019420) #24	ENSJJAG00000015737 #25	ENSJJAG00000019398	Arhgap5 (ENSJJAG00000022832) #28	Egln3 (ENSJJAG00000013045) #31	ENSJJAG00000003660	Sptssa (ENSJJAG00000014413) #32	ENSJJAG00000015801 #33
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	487										ENSDORG00000029359	Prkd1 (ENSDORG00000000354) #15	G2e3 (ENSDORG00000010913) #18	Scfd1 (ENSDORG00000013408) #19	Coch (ENSDORG00000006859) #20	Strn3 (ENSDORG00000006860) #21	ENSDORG00000009468 #22	Hectd1 (ENSDORG00000005774) #23	Heatr5a (ENSDORG00000011883) #24	Dtd2 (ENSDORG00000009945) #25	Nubpl (ENSDORG00000013986) #27	Arhgap5 (ENSDORG00000005120) #28	Akap6 (ENSDORG00000011551) #29	Npas3 (ENSDORG00000000860) #30
Kangaroo rat	MODERN SPECIES	456																ENSDORG00000029969 #22	ENSDORG00000008588	ENSDORG00000001970	Naa35 (ENSDORG00000001956)	Agtpbp1 (ENSDORG00000011166)	ENSDORG00000024497	Ntrk2 (ENSDORG00000007365)	ENSDORG00000024890	Slc28a3 (ENSDORG00000008007)	Rmi1 (ENSDORG00000028852)	ENSDORG00000016024	2210016F16Rik (ENSDORG00000016023)	Kif27 (ENSDORG00000011169)	Gkap1 (ENSDORG00000026066)	Ubqln1 (ENSDORG00000015266)	Idnk (ENSDORG00000008263)
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Hystricomorpha	ANCESTRAL SPECIES	15	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Naked mole-rat female	MODERN SPECIES	11	CIDEB (ENSHGLG00000002818)	NOP9 (ENSHGLG00000002852)	DHRS1 (ENSHGLG00000037207)	RABGGTA (ENSHGLG00000002942)	ENSHGLG00000003157	ENSHGLG00000003920	ENSHGLG00000043958	ENSHGLG00000002296	ENSHGLG00000043059	ENSHGLG00000045310	ENSHGLG00000036541	ENSHGLG00000004538	COCH (ENSHGLG00000002211) #20	ENSHGLG00000002072 #21	ENSHGLG00000031903	ENSHGLG00000006911 #22	HECTD1 (ENSHGLG00000004613) #23	ENSHGLG00000038178	HEATR5A (ENSHGLG00000002799) #24	ENSHGLG00000038655	DTD2 (ENSHGLG00000046094) #25	GPR33 (ENSHGLG00000019958) #26	ENSHGLG00000001878	NUBPL (ENSHGLG00000043820) #27	ENSHGLG00000003444	ENSHGLG00000043700	ENSHGLG00000003356 #28	ENSHGLG00000050973	ENSHGLG00000048569	ENSHGLG00000036198	ENSHGLG00000050257
Hystricomorpha_a	ANCESTRAL SPECIES	18	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Guinea pig	MODERN SPECIES	77				ENSCPOG00000031139	ENSCPOG00000024606	ENSCPOG00000024349	ENSCPOG00000022248	STXBP6 (ENSCPOG00000033780) #8	NOVA1 (ENSCPOG00000030872) #9	PRKD1 (ENSCPOG00000004855) #15	G2E3 (ENSCPOG00000002781) #18	ENSCPOG00000013059	SCFD1 (ENSCPOG00000007229) #19	COCH (ENSCPOG00000015577) #20	STRN3 (ENSCPOG00000015579) #21	AP4S1 (ENSCPOG00000005118) #22	HECTD1 (ENSCPOG00000013566) #23	ENSCPOG00000036916	HEATR5A (ENSCPOG00000015747) #24	DTD2 (ENSCPOG00000036705) #25	GPR33 (ENSCPOG00000038573) #26	NUBPL (ENSCPOG00000010163) #27	ENSCPOG00000030336	ARHGAP5 (ENSCPOG00000007798) #28
Hystricomorpha_b	ANCESTRAL SPECIES	18	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b.t	ENSGT01030000234551.k.d.b.a.a.b.s	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00950000182957.a.a.b	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	116	ENSCLAG00000011419	ENSCLAG00000010999	ENSCLAG00000010184	ENSCLAG00000010208	GZMH (ENSCLAG00000010860)	ENSCLAG00000010055	STXBP6 (ENSCLAG00000009408) #8	NOVA1 (ENSCLAG00000008948) #9	ENSCLAG00000015104	FOXG1 (ENSCLAG00000011906) #13	PRKD1 (ENSCLAG00000011245) #15	G2E3 (ENSCLAG00000008721) #18	SCFD1 (ENSCLAG00000012279) #19	COCH (ENSCLAG00000011067) #20	ENSCLAG00000011538 #21	ENSCLAG00000009036 #22	HECTD1 (ENSCLAG00000011096) #23	HEATR5A (ENSCLAG00000009555) #24	DTD2 (ENSCLAG00000014737) #25	GPR33 (ENSCLAG00000013344) #26	NUBPL (ENSCLAG00000011929) #27	ARHGAP5 (ENSCLAG00000015975) #28	AKAP6 (ENSCLAG00000013553) #29	NPAS3 (ENSCLAG00000013939) #30	ENSCLAG00000011029	EGLN3 (ENSCLAG00000010720) #31	ENSCLAG00000012005	EAPP (ENSCLAG00000013007) #33	SNX6 (ENSCLAG00000012353) #34	ENSCLAG00000012876 #35	BAZ1A (ENSCLAG00000015173) #36
Long-tailed chinchilla	MODERN SPECIES	132	ZNF365 (ENSCLAG00000010746)	ADO (ENSCLAG00000010337)	EGR2 (ENSCLAG00000009233)	ENSCLAG00000010415	NRBF2 (ENSCLAG00000011072)	JMJD1C (ENSCLAG00000012242)	REEP3 (ENSCLAG00000012622)	ENSCLAG00000012770	ENSCLAG00000009474	CTNNA3 (ENSCLAG00000010308)	LRRTM3 (ENSCLAG00000011661)	DNAJC12 (ENSCLAG00000012847)	SIRT1 (ENSCLAG00000015502)	HERC4 (ENSCLAG00000016138)	MYPN (ENSCLAG00000011004)	ENSCLAG00000014026 #22	PBLD (ENSCLAG00000010284)	HNRNPH3 (ENSCLAG00000010680)	RUFY2 (ENSCLAG00000012405)	DNA2 (ENSCLAG00000012086)	SLC25A16 (ENSCLAG00000015512)	CCAR1 (ENSCLAG00000011807)	THBS4 (ENSCLAG00000009452)	MTX3 (ENSCLAG00000011076)	CMYA5 (ENSCLAG00000009334)	TENT2 (ENSCLAG00000010023)	HOMER1 (ENSCLAG00000010571)	JMY (ENSCLAG00000009333)	BHMT (ENSCLAG00000010253)	BHMT2 (ENSCLAG00000013633)	DMGDH (ENSCLAG00000014854)
Degu	DUPLICATION
Degu	MODERN SPECIES	331																ENSODEG00000002423 #22	ENSODEG00000002362	ENSODEG00000002343	ENSODEG00000002260	ENSODEG00000002224	ENSODEG00000002218
Degu	MODERN SPECIES	127					ENSODEG00000005143	ENSODEG00000005132	FOXG1 (ENSODEG00000005094) #13	ENSODEG00000019116	ENSODEG00000005027	PRKD1 (ENSODEG00000004844) #15	ENSODEG00000004710	G2E3 (ENSODEG00000004806) #18	SCFD1 (ENSODEG00000004638) #19	COCH (ENSODEG00000004531) #20	STRN3 (ENSODEG00000004497) #21	ENSODEG00000004725 #22	HECTD1 (ENSODEG00000004383) #23	ENSODEG00000019035	HEATR5A (ENSODEG00000003991) #24	ENSODEG00000003834 #25	ENSODEG00000003785	NUBPL (ENSODEG00000008332) #27	ENSODEG00000008269	ENSODEG00000008253	ARHGAP5 (ENSODEG00000008123) #28	AKAP6 (ENSODEG00000008112) #29	ENSODEG00000008077	NPAS3 (ENSODEG00000007900) #30	STRC (ENSODEG00000007474)	ENSODEG00000007361	ENSODEG00000005621 #31
Sciuridae	ANCESTRAL SPECIES	8	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Marmotini	ANCESTRAL SPECIES	15	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.a.a.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36
Marmotini_b	ANCESTRAL SPECIES	108						ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a	ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j.a	ENSGT00940000156499 #8	ENSGT00940000155573 #9	ENSGT00940000160678.a #13	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00390000002766.b.b #32	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00640000092775 #37
Arctic ground squirrel	MODERN SPECIES	18		ENSUPAG00010014330	ENSUPAG00010014315	ENSUPAG00010014307	ENSUPAG00010012638	ENSUPAG00010012609	STXBP6 (ENSUPAG00010012595) #8	NOVA1 (ENSUPAG00010012581) #9	ENSUPAG00010012575	FOXG1 (ENSUPAG00010012563) #13	PRKD1 (ENSUPAG00010012522) #15	G2E3 (ENSUPAG00010012503) #18	SCFD1 (ENSUPAG00010012422) #19	COCH (ENSUPAG00010012392) #20	STRN3 (ENSUPAG00010012325) #21	AP4S1 (ENSUPAG00010012317) #22	HECTD1 (ENSUPAG00010012181) #23	HEATR5A (ENSUPAG00010002104) #24	ENSUPAG00010002029 #25	GPR33 (ENSUPAG00010002026) #26	NUBPL (ENSUPAG00010002012) #27	ARHGAP5 (ENSUPAG00010001993) #28	AKAP6 (ENSUPAG00010001952) #29	ENSUPAG00010001945	NPAS3 (ENSUPAG00010001878) #30	EGLN3 (ENSUPAG00010001862) #31	SPTSSA (ENSUPAG00010001850) #32	ENSUPAG00010001845	EAPP (ENSUPAG00010001833) #33	SNX6 (ENSUPAG00010001786) #34	ENSUPAG00010001776 #35
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	84	ENSSTOG00000011910	ENSSTOG00000022442	AKR1E2 (ENSSTOG00000014534)	ENSSTOG00000031995	KLF6 (ENSSTOG00000007751)	PITRM1 (ENSSTOG00000006348)	PFKP (ENSSTOG00000006311)	ADARB2 (ENSSTOG00000014329)	WDR37 (ENSSTOG00000014301)	ENSSTOG00000023260	IDI2 (ENSSTOG00000010058)	ENSSTOG00000010042	LARP4B (ENSSTOG00000000587)	DIP2C (ENSSTOG00000012335)	ZMYND11 (ENSSTOG00000010061)	ENSSTOG00000034561 #22	CHRM3 (ENSSTOG00000021752)	RYR2 (ENSSTOG00000014690)	MTR (ENSSTOG00000004093)	ACTN2 (ENSSTOG00000007354)	HEATR1 (ENSSTOG00000007293)	LGALS8 (ENSSTOG00000007266)	EDARADD (ENSSTOG00000022830)	ERO1B (ENSSTOG00000013810)	GPR137B (ENSSTOG00000013802)	NID1 (ENSSTOG00000015736)	LYST (ENSSTOG00000015713)	GNG4 (ENSSTOG00000015712)	ENSSTOG00000030497	ENSSTOG00000020260	B3GALNT2 (ENSSTOG00000015705)
Squirrel	DUPLICATION
Squirrel	MODERN SPECIES	94			ENSSTOG00000023363	ENSSTOG00000029160	ENSSTOG00000027256	ENSSTOG00000023097	STXBP6 (ENSSTOG00000013479) #8	NOVA1 (ENSSTOG00000020788) #9	ENSSTOG00000027642	FOXG1 (ENSSTOG00000024079) #13	PRKD1 (ENSSTOG00000003873) #15	G2E3 (ENSSTOG00000008924) #18	SCFD1 (ENSSTOG00000008939) #19	COCH (ENSSTOG00000000556) #20	STRN3 (ENSSTOG00000010749) #21	ENSSTOG00000010759 #22	HECTD1 (ENSSTOG00000023965) #23	HEATR5A (ENSSTOG00000004620) #24	ENSSTOG00000025562 #25	GPR33 (ENSSTOG00000027164) #26	NUBPL (ENSSTOG00000004688) #27	ARHGAP5 (ENSSTOG00000020291) #28	AKAP6 (ENSSTOG00000024157) #29	NPAS3 (ENSSTOG00000014736) #30	EGLN3 (ENSSTOG00000027368) #31	SPTSSA (ENSSTOG00000025158) #32	ENSSTOG00000005273 #33	SNX6 (ENSSTOG00000030590) #34	ENSSTOG00000001675 #35	BAZ1A (ENSSTOG00000012204) #36	ENSSTOG00000027145 #37
Squirrel	MODERN SPECIES	153								PCDH9 (ENSSTOG00000025475)	ENSSTOG00000032665	ENSSTOG00000019374	MAGEB18 (ENSSTOG00000010136)	ENSSTOG00000026907	ENSSTOG00000033066	ENSSTOG00000031082	ENSSTOG00000026622	ENSSTOG00000026056 #22	IL1RAPL1 (ENSSTOG00000016269)	ENSSTOG00000021156	NR0B1 (ENSSTOG00000025906)	TASL (ENSSTOG00000027484)	ENSSTOG00000008732	TAB3 (ENSSTOG00000027885)	ENSSTOG00000020610	ENSSTOG00000028562
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	1	ENSMMMG00000011431	ENSMMMG00000011415	ENSMMMG00000009778	ENSMMMG00000009755	ENSMMMG00000009734	STXBP6 (ENSMMMG00000009706) #8	NOVA1 (ENSMMMG00000009673) #9	ENSMMMG00000009611 #13	PRKD1 (ENSMMMG00000009545) #15	ENSMMMG00000009512	ENSMMMG00000009483 #18	ENSMMMG00000009462 #18	SCFD1 (ENSMMMG00000009409) #19	COCH (ENSMMMG00000009368) #20	STRN3 (ENSMMMG00000007068) #21	AP4S1 (ENSMMMG00000007043) #22	HECTD1 (ENSMMMG00000006978) #23	HEATR5A (ENSMMMG00000006921) #24	DTD2 (ENSMMMG00000006910) #25	GPR33 (ENSMMMG00000006908) #26	NUBPL (ENSMMMG00000006890) #27	ENSMMMG00000006876	ARHGAP5 (ENSMMMG00000006856) #28	ENSMMMG00000006834 #29	ENSMMMG00000006799 #30	EGLN3 (ENSMMMG00000006788) #31	SPTSSA (ENSMMMG00000006776) #32	ENSMMMG00000006766	EAPP (ENSMMMG00000006761) #33	ENSMMMG00000006742 #34	ENSMMMG00000006738 #34
Alpin marmot	MODERN SPECIES		TRMT6 (ENSMMMG00000000614)	CHGB (ENSMMMG00000000597)	SHLD1 (ENSMMMG00000000588)	GPCPD1 (ENSMMMG00000000455)	PROKR2 (ENSMMMG00000000400)	CDS2 (ENSMMMG00000000346)	ENSMMMG00000000309	TMEM230 (ENSMMMG00000000268)	ENSMMMG00000000257	SLC23A2 (ENSMMMG00000000215)	RASSF2 (ENSMMMG00000000162)	PRND (ENSMMMG00000000142)	PRNP (ENSMMMG00000000138)	ENSMMMG00000000123	SMOX (ENSMMMG00000000044)	ENSMMMG00000023958 #22	PANK2 (ENSMMMG00000023957)	MAVS (ENSMMMG00000023955)	AP5S1 (ENSMMMG00000023953)	CDC25B (ENSMMMG00000023949)	CENPB (ENSMMMG00000023947)	SPEF1 (ENSMMMG00000023946)	ADISSP (ENSMMMG00000023945)	HSPA12B (ENSMMMG00000023943)	SIGLEC1 (ENSMMMG00000023929)	ADAM33 (ENSMMMG00000023924)	GFRA4 (ENSMMMG00000023923)	ATRN (ENSMMMG00000023922)	ENSMMMG00000023921	DNAAF9 (ENSMMMG00000023920)	SLC4A11 (ENSMMMG00000023919)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005004402	GZMB (ENSSVLG00005004217)	ENSSVLG00005004187	ENSSVLG00005004176	STXBP6 (ENSSVLG00005004162) #8	ENSSVLG00005004148	ENSSVLG00005004139	NOVA1 (ENSSVLG00005004100) #9	FOXG1 (ENSSVLG00005004066) #13	PRKD1 (ENSSVLG00005003998) #15	ENSSVLG00005003953 #18	SCFD1 (ENSSVLG00005003909) #19	ENSSVLG00005003853 #20	ENSSVLG00005003807 #20	STRN3 (ENSSVLG00005003765) #21	AP4S1 (ENSSVLG00005003726) #22	HECTD1 (ENSSVLG00005003644) #23	HEATR5A (ENSSVLG00005003550) #24	DTD2 (ENSSVLG00005003527) #25	GPR33 (ENSSVLG00005003516) #26	NUBPL (ENSSVLG00005003491) #27	ARHGAP5 (ENSSVLG00005003448) #28	AKAP6 (ENSSVLG00005003395) #29	NPAS3 (ENSSVLG00005003199) #30	EGLN3 (ENSSVLG00005003108) #31	ENSSVLG00005003092	ENSSVLG00005003086	ENSSVLG00005003068	ENSSVLG00005003053 #32	ENSSVLG00005003042 #33	ENSSVLG00005003024
Eurasian red squirrel	MODERN SPECIES	12	ENSSVLG00005000672	ENSSVLG00005000638	ENSSVLG00005000613	CCDC93 (ENSSVLG00005000586)	INSIG2 (ENSSVLG00005000562)	EN1 (ENSSVLG00005000531)	MARCO (ENSSVLG00005000500)	C1QL2 (ENSSVLG00005000478)	STEAP3 (ENSSVLG00005000464)	C2orf76 (ENSSVLG00005000450)	DBI (ENSSVLG00005000415)	TMEM37 (ENSSVLG00005000377)	SCTR (ENSSVLG00005000343)	CFAP221 (ENSSVLG00005000301)	TMEM177 (ENSSVLG00005000277)	ENSSVLG00005000270 #22	PTPN4 (ENSSVLG00005000228)	EPB41L5 (ENSSVLG00005024139)	TMEM185B (ENSSVLG00005024068)	RALB (ENSSVLG00005024049)	INHBB (ENSSVLG00005024036)	ENSSVLG00005024019	ENSSVLG00005023991	GLI2 (ENSSVLG00005023981)	TFCP2L1 (ENSSVLG00005023914)	CLASP1 (ENSSVLG00005023791)	NIFK (ENSSVLG00005023724)	TSN (ENSSVLG00005023674)	ENSSVLG00005023632	ENSSVLG00005023597	ENSSVLG00005023566
Lagomorpha	ANCESTRAL SPECIES	14	ENSGT00940000160206	ENSGT00940000160923	ENSGT00940000161519	ENSGT00940000162110	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.b	ENSGT01030000234551.k.d.b.a.a.b	ENSGT01030000234551.k.d.b.a.a.a.b.a	ENSGT00940000156499 #8	ENSGT00950000183024.a.b.a #15	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00940000154553.a.b #28	ENSGT00810000125473.B #29	ENSGT00940000158051 #30	ENSGT00940000158745 #31	ENSGT00940000167277	ENSGT00390000001332 #33	ENSGT00940000154940 #34	ENSGT00950000183000.c.b #35	ENSGT00940000158135 #36	ENSGT00390000012799
Rabbit	MODERN SPECIES	8	ENSOCUG00000028992	STXBP6 (ENSOCUG00000005144) #8	ENSOCUG00000033166	ENSOCUG00000026942	NOVA1 (ENSOCUG00000017622) #9	ENSOCUG00000022058	ENSOCUG00000007554	ENSOCUG00000022201	ENSOCUG00000024246 #13	ENSOCUG00000037372	PRKD1 (ENSOCUG00000022585) #15	G2E3 (ENSOCUG00000007824) #18	SCFD1 (ENSOCUG00000007835) #19	COCH (ENSOCUG00000012042) #20	STRN3 (ENSOCUG00000011418) #21	AP4S1 (ENSOCUG00000011430) #22	HECTD1 (ENSOCUG00000003816) #23	ENSOCUG00000002021	HEATR5A (ENSOCUG00000007228) #24	ENSOCUG00000027034	DTD2 (ENSOCUG00000007778) #25	GPR33 (ENSOCUG00000022411) #26	NUBPL (ENSOCUG00000017713) #27	ARHGAP5 (ENSOCUG00000010548) #28	ENSOCUG00000025739	AKAP6 (ENSOCUG00000014205) #29	NPAS3 (ENSOCUG00000010632) #30	ENSOCUG00000008560 #31	ENSOCUG00000024362	EAPP (ENSOCUG00000003226) #33	SNX6 (ENSOCUG00000029421) #34
Pika	MODERN SPECIES	5266																AP4S1 (ENSOPRG00000016762) #22	HECTD1 (ENSOPRG00000002296) #23