Bilateria ANCESTRAL SPECIES ENSGT00970000193421.B #22 Chordata ANCESTRAL SPECIES ENSGT00970000193421.B #22 Vertebrata ANCESTRAL SPECIES ENSGT00970000193421.B #22 Gnathostomata ANCESTRAL SPECIES 2 ENSGT00440000037341.b.a ENSGT00940000159180 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710 ENSGT01090000260005.a.b.a.b.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00550000074824 ENSGT00390000006916.d ENSGT00940000161442 ENSGT00940000161150 ENSGT00950000185018 Euteleostomi ANCESTRAL SPECIES 18 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.a.b ENSGT00940000154710.a.b.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Sarcopterygii ANCESTRAL SPECIES 44 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000017608 ENSGT00940000167604 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Tetrapoda ANCESTRAL SPECIES 51 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Amniota ANCESTRAL SPECIES 8 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Mammalia ANCESTRAL SPECIES 26 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Theria ANCESTRAL SPECIES 14 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Eutheria ANCESTRAL SPECIES 12 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Boreoeutheria ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Laurasiatheria ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Laurasiatheria_a ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Laurasiatheria_b ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Carnivora ANCESTRAL SPECIES ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Caniformia ANCESTRAL SPECIES 15 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Caniformia_b ANCESTRAL SPECIES 14 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Ursidae ANCESTRAL SPECIES 10 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000011943.a.a.b #24 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Ursus ANCESTRAL SPECIES 202 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000011943.a.a.b #24 ENSGT00390000006205.b ENSGT00390000016972.a.a.b.b.a ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000001332 American black bear MODERN SPECIES 3121 AP4S1 (ENSUAMG00000014792) #22 HECTD1 (ENSUAMG00000014859) #23 ENSUAMG00000016611 #24 Polar bear MODERN SPECIES 413 ENSUMAG00000005579 ENSUMAG00000005585 PRKD1 (ENSUMAG00000005703) G2E3 (ENSUMAG00000006635) SCFD1 (ENSUMAG00000006644) COCH (ENSUMAG00000006665) STRN3 (ENSUMAG00000006765) AP4S1 (ENSUMAG00000007515) #22 HECTD1 (ENSUMAG00000007523) #23 ENSUMAG00000007548 #24 HEATR5A (ENSUMAG00000007915) ENSUMAG00000010111 ENSUMAG00000010115 GPR33 (ENSUMAG00000010119) NUBPL (ENSUMAG00000010133) ARHGAP5 (ENSUMAG00000010158) ENSUMAG00000010161 AKAP6 (ENSUMAG00000010177) NPAS3 (ENSUMAG00000010286) EGLN3 (ENSUMAG00000010391) EAPP (ENSUMAG00000010403) Giant Panda MODERN SPECIES 12 CMA1 (ENSAMEG00000015898) ENSAMEG00000015886 CTSG (ENSAMEG00000029866) GZMB (ENSAMEG00000015872) ENSAMEG00000025225 STXBP6 (ENSAMEG00000015837) NOVA1 (ENSAMEG00000015330) ENSAMEG00000024395 FOXG1 (ENSAMEG00000025179) ENSAMEG00000004988 PRKD1 (ENSAMEG00000004991) G2E3 (ENSAMEG00000005054) SCFD1 (ENSAMEG00000005072) COCH (ENSAMEG00000015859) STRN3 (ENSAMEG00000015829) AP4S1 (ENSAMEG00000015823) #22 HECTD1 (ENSAMEG00000015770) #23 ENSAMEG00000028378 #24 HEATR5A (ENSAMEG00000015736) DTD2 (ENSAMEG00000024284) GPR33 (ENSAMEG00000019764) NUBPL (ENSAMEG00000015724) ARHGAP5 (ENSAMEG00000015709) AKAP6 (ENSAMEG00000015685) NPAS3 (ENSAMEG00000029238) EGLN3 (ENSAMEG00000023682) SPTSSA (ENSAMEG00000028071) EAPP (ENSAMEG00000006454) SNX6 (ENSAMEG00000015476) CFL2 (ENSAMEG00000015508) BAZ1A (ENSAMEG00000015512) Mustelinae ANCESTRAL SPECIES 32 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 American mink MODERN SPECIES 84 ENSNVIG00000004128 ENSNVIG00000004119 ENSNVIG00000004111 PRKD1 (ENSNVIG00000003993) G2E3 (ENSNVIG00000003931) SCFD1 (ENSNVIG00000003759) COCH (ENSNVIG00000003618) STRN3 (ENSNVIG00000003579) AP4S1 (ENSNVIG00000003530) #22 HECTD1 (ENSNVIG00000003432) #23 ENSNVIG00000003418 F5H619 (ENSNVIG00000003257) DTD2 (ENSNVIG00000003240) GPR33 (ENSNVIG00000003227) NUBPL (ENSNVIG00000003207) ARHGAP5 (ENSNVIG00000003107) AKAP6 (ENSNVIG00000003054) NPAS3 (ENSNVIG00000002999) EGLN3 (ENSNVIG00000002975) ENSNVIG00000002935 SPTSSA (ENSNVIG00000002933) EAPP (ENSNVIG00000002902) SNX6 (ENSNVIG00000002824) CFL2 (ENSNVIG00000002744) Ferret MODERN SPECIES 210 CMA1 (ENSMPUG00000005588) CTSG (ENSMPUG00000005559) GZMH (ENSMPUG00000005487) GZMB (ENSMPUG00000005479) ENSMPUG00000005470 NOVA1 (ENSMPUG00000005462) ENSMPUG00000005454 ENSMPUG00000018867 ENSMPUG00000018865 FOXG1 (ENSMPUG00000005425) PRKD1 (ENSMPUG00000005409) G2E3 (ENSMPUG00000005396) SCFD1 (ENSMPUG00000005374) COCH (ENSMPUG00000005358) STRN3 (ENSMPUG00000005340) AP4S1 (ENSMPUG00000005330) #22 HECTD1 (ENSMPUG00000005315) #23 Canidae DUPLICATION Canidae ANCESTRAL SPECIES ENSGT00970000193421.B.g #22 Canis_lupus ANCESTRAL SPECIES ENSGT00970000193421.B.g #22 Dog MODERN SPECIES 31 ENSCAFG00845027160 UHMK1 (ENSCAFG00845027027) UAP1 (ENSCAFG00845026767) DDR2 (ENSCAFG00845026475) HSD17B7 (ENSCAFG00845026233) CCDC190 (ENSCAFG00845026143) RGS4 (ENSCAFG00845026010) RGS5 (ENSCAFG00845025929) NUF2 (ENSCAFG00845025722) PBX1 (ENSCAFG00845025355) LMX1A (ENSCAFG00845025098) RXRG (ENSCAFG00845024833) LRRC52 (ENSCAFG00845024741) MGST3 (ENSCAFG00845024662) ENSCAFG00845024594 ENSCAFG00845024557 #22 TMCO1 (ENSCAFG00845024491) UCK2 (ENSCAFG00845024343) FAM78B (ENSCAFG00845024241) ENSCAFG00845030595 ENSCAFG00845030578 BROX (ENSCAFG00845030521) AIDA (ENSCAFG00845030498) MIA3 (ENSCAFG00845030361) TAF1A (ENSCAFG00845030298) HHIPL2 (ENSCAFG00845030272) DUSP10 (ENSCAFG00845030259) ENSCAFG00845030246 HLX (ENSCAFG00845030227) MTARC1 (ENSCAFG00845030177) ENSCAFG00845030148 Canidae DUPLICATION Canidae ANCESTRAL SPECIES 4 ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00510000046986.v.a.a.b.a.b.b.a ENSGT00940000166484 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.h.a #22 ENSGT00940000165919 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.w ENSGT00940000154940 ENSGT00950000183000.c.b Canis_lupus ANCESTRAL SPECIES 8 ENSGT00940000156499 ENSGT01050000248456 ENSGT00940000155573 ENSGT00950000183206.b.c.b.o.a ENSGT00390000005569.x.a.b.b.a.a ENSGT00940000155120.lb.a.b.b ENSGT00940000160678.a ENSGT00510000046986.v.a.a.b.a.b.b.a ENSGT00940000166484 ENSGT00950000183024.a.b.a ENSGT00950000183030.m.a.b.b.d.b.b ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.h.a #22 ENSGT00940000165919 ENSGT00940000156572 #23 ENSGT00390000008918.a.a ENSGT00390000006205.b ENSGT00940000153431.a.o ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.w ENSGT00940000154940 Dingo MODERN SPECIES 161 ENSCAFG00020024149 ENSCAFG00020024148 ENSCAFG00020024147 ENSCAFG00020024144 FOXG1 (ENSCAFG00020024141) ENSCAFG00020024139 NACA2 (ENSCAFG00020024135) PRKD1 (ENSCAFG00020024128) ENSCAFG00020024124 ENSCAFG00020024122 ENSCAFG00020024119 SCFD1 (ENSCAFG00020024112) COCH (ENSCAFG00020024104) STRN3 (ENSCAFG00020024096) ENSCAFG00020024090 AP4S1 (ENSCAFG00020024081) #22 HECTD1 (ENSCAFG00020023723) #23 ENSCAFG00020023694 HEATR5A (ENSCAFG00020023674) ENSCAFG00020023663 GPR33 (ENSCAFG00020023662) ENSCAFG00020023659 ENSCAFG00020023655 ENSCAFG00020023650 ENSCAFG00020023647 ARHGAP5 (ENSCAFG00020023643) AKAP6 (ENSCAFG00020023612) NPAS3 (ENSCAFG00020023578) EGLN3 (ENSCAFG00020023576) SPTSSA (ENSCAFG00020023575) EAPP (ENSCAFG00020023572) Dog MODERN SPECIES 36 ENSCAFG00845008954 NOVA1 (ENSCAFG00845008983) ENSCAFG00845009061 ENSCAFG00845009104 ENSCAFG00845009134 ENSCAFG00845009198 ENSCAFG00845009282 ENSCAFG00845009362 ENSCAFG00845009533 ENSCAFG00845009959 SCFD1 (ENSCAFG00845010038) ENSCAFG00845010191 SCFD1 (ENSCAFG00845010280) COCH (ENSCAFG00845010721) STRN3 (ENSCAFG00845010851) AP4S1 (ENSCAFG00845010937) #22 ENSCAFG00845011023 HECTD1 (ENSCAFG00845011087) #23 HEATR5A (ENSCAFG00845011579) ENSCAFG00845011772 DTD2 (ENSCAFG00845011795) GPR33 (ENSCAFG00845011804) NUBPL (ENSCAFG00845011856) ARHGAP5 (ENSCAFG00845012045) AKAP6 (ENSCAFG00845012171) NPAS3 (ENSCAFG00845012355) EGLN3 (ENSCAFG00845012583) ENSCAFG00845001464 ENSCAFG00845001492 EAPP (ENSCAFG00845001503) ENSCAFG00845001517 Red fox MODERN SPECIES 65 ENSVVUG00000029221 GZMB (ENSVVUG00000029236) STXBP6 (ENSVVUG00000029357) NOVA1 (ENSVVUG00000029367) ENSVVUG00000029372 ENSVVUG00000029376 ENSVVUG00000029378 ENSVVUG00000029380 ENSVVUG00000029381 ENSVVUG00000029384 PRKD1 (ENSVVUG00000029386) G2E3 (ENSVVUG00000029399) SCFD1 (ENSVVUG00000029414) COCH (ENSVVUG00000029419) STRN3 (ENSVVUG00000029456) ENSVVUG00000029587 #22 ENSVVUG00000029588 HECTD1 (ENSVVUG00000029612) #23 HEATR5A (ENSVVUG00000029806) DTD2 (ENSVVUG00000029907) GPR33 (ENSVVUG00000029908) ENSVVUG00000029909 NUBPL (ENSVVUG00000029910) ENSVVUG00000029921 ARHGAP5 (ENSVVUG00000029922) ENSVVUG00000029926 AKAP6 (ENSVVUG00000029932) NPAS3 (ENSVVUG00000029947) ENSVVUG00000029949 ENSVVUG00000029955 Canidae ANCESTRAL SPECIES ENSGT00970000193421.B.h.b #22 Red fox MODERN SPECIES 8 ENSVVUG00000009977 UHMK1 (ENSVVUG00000009990) UAP1 (ENSVVUG00000010001) DDR2 (ENSVVUG00000010010) HSD17B7 (ENSVVUG00000010017) CCDC190 (ENSVVUG00000010024) RGS4 (ENSVVUG00000010037) RGS5 (ENSVVUG00000010040) NUF2 (ENSVVUG00000010059) PBX1 (ENSVVUG00000010091) LMX1A (ENSVVUG00000010113) RXRG (ENSVVUG00000010121) LRRC52 (ENSVVUG00000010146) MGST3 (ENSVVUG00000010150) ENSVVUG00000010155 ENSVVUG00000010169 #22 UCK2 (ENSVVUG00000010176) FAM78B (ENSVVUG00000010186) ENSVVUG00000010193 FAM177B (ENSVVUG00000010199) BROX (ENSVVUG00000010206) AIDA (ENSVVUG00000010215) MIA3 (ENSVVUG00000010238) TAF1A (ENSVVUG00000010281) HHIPL2 (ENSVVUG00000010307) ENSVVUG00000010329 ENSVVUG00000010341 DUSP10 (ENSVVUG00000010349) HLX (ENSVVUG00000010359) ENSVVUG00000010364 ENSVVUG00000010371 Felidae ANCESTRAL SPECIES 1 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Panthera DUPLICATION Panthera DUPLICATION Panthera ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a.d ENSGT00970000193421.B.c.a #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Panthera_a ANCESTRAL SPECIES 7 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00530000063666.a.d ENSGT00940000159386 ENSGT00950000183095.a.a.d ENSGT00970000193421.B.d #22 ENSGT00950000183095.a.a.c ENSGT00970000193421.B.c.a #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 leopard MODERN SPECIES 112 ENSPPRG00000012178 ENSPPRG00000012344 PRKD1 (ENSPPRG00000012056) G2E3 (ENSPPRG00000011841) SCFD1 (ENSPPRG00000011656) ENSPPRG00000011631 COCH (ENSPPRG00000011542) ENSPPRG00000011448 ENSPPRG00000011315 ENSPPRG00000011288 #22 HECTD1 (ENSPPRG00000011166) #23 HEATR5A (ENSPPRG00000010977) DTD2 (ENSPPRG00000010899) NUBPL (ENSPPRG00000010686) ENSPPRG00000010606 ARHGAP5 (ENSPPRG00000010531) AKAP6 (ENSPPRG00000010405) NPAS3 (ENSPPRG00000010049) EGLN3 (ENSPPRG00000009618) EAPP (ENSPPRG00000009599) Tiger MODERN SPECIES 578 KHNYN (ENSPTIG00000018107) SDR39U1 (ENSPTIG00000020216) CMA1 (ENSPTIG00000021159) ENSPTIG00000021407 CTSG (ENSPTIG00000021808) GZMH (ENSPTIG00000021936) GZMB (ENSPTIG00000000297) STXBP6 (ENSPTIG00000006999) NOVA1 (ENSPTIG00000009518) ENSPTIG00000004679 PRKD1 (ENSPTIG00000011129) G2E3 (ENSPTIG00000013202) SCFD1 (ENSPTIG00000015762) COCH (ENSPTIG00000017113) STRN3 (ENSPTIG00000018841) ENSPTIG00000019757 #22 HECTD1 (ENSPTIG00000020313) #23 ENSPTIG00000000922 HEATR5A (ENSPTIG00000003357) DTD2 (ENSPTIG00000008518) NUBPL (ENSPTIG00000009627) ARHGAP5 (ENSPTIG00000011092) AKAP6 (ENSPTIG00000012016) NPAS3 (ENSPTIG00000015688) EGLN3 (ENSPTIG00000017846) EAPP (ENSPTIG00000018266) Panthera ANCESTRAL SPECIES 75 ENSGT00940000159568 ENSGT00390000012178.g.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00970000193421.B.c.b #22 Tiger MODERN SPECIES 336 ATP7A (ENSPTIG00000021533) COX7B (ENSPTIG00000021523) MAGT1 (ENSPTIG00000021447) ATRX (ENSPTIG00000021388) FGF16 (ENSPTIG00000021358) ENSPTIG00000021338 #22 Panthera_a ANCESTRAL SPECIES 90 ENSGT00940000159568 ENSGT00390000012178.g.b.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00970000193421.B.c.b #22 leopard MODERN SPECIES 191 ENSPPRG00000024369 ATP7A (ENSPPRG00000024314) COX7B (ENSPPRG00000024301) MAGT1 (ENSPPRG00000024285) ATRX (ENSPPRG00000024247) FGF16 (ENSPPRG00000024226) ENSPPRG00000024213 #22 Panthera ANCESTRAL SPECIES ENSGT00970000193421.B.d #22 Panthera_a ANCESTRAL SPECIES 7 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00530000063666.a.d ENSGT00940000159386 ENSGT00950000183095.a.a.d ENSGT00970000193421.B.d #22 ENSGT00950000183095.a.a.c ENSGT00970000193421.B.c.a #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b lion MODERN SPECIES 6 CMA1 (ENSPLOG00000020413) ENSPLOG00000020469 CTSG (ENSPLOG00000020586) GZMH (ENSPLOG00000020636) ENSPLOG00000020744 STXBP6 (ENSPLOG00000020897) ENSPLOG00000020942 ENSPLOG00000020986 ENSPLOG00000021005 PRKD1 (ENSPLOG00000021084) G2E3 (ENSPLOG00000000330) SCFD1 (ENSPLOG00000000380) ENSPLOG00000000466 COCH (ENSPLOG00000000512) STRN3 (ENSPLOG00000000594) AP4S1 (ENSPLOG00000000730) #22 HECTD1 (ENSPLOG00000000806) #23 HEATR5A (ENSPLOG00000000896) DTD2 (ENSPLOG00000000933) GPR33 (ENSPLOG00000000949) NUBPL (ENSPLOG00000000974) ARHGAP5 (ENSPLOG00000001022) AKAP6 (ENSPLOG00000001171) NPAS3 (ENSPLOG00000001299) ENSPLOG00000001420 EGLN3 (ENSPLOG00000001437) ENSPLOG00000001468 SPTSSA (ENSPLOG00000001474) EAPP (ENSPLOG00000001486) ENSPLOG00000001525 ENSPLOG00000001550 Cat DUPLICATION Cat MODERN SPECIES 237 CMA1 (ENSFCAG00000005607) ENSFCAG00000008194 CTSG (ENSFCAG00000046114) GZMB (ENSFCAG00000002893) ENSFCAG00000013499 STXBP6 (ENSFCAG00000022477) NOVA1 (ENSFCAG00000004226) ENSFCAG00000048489 FOXG1 (ENSFCAG00000044917) ENSFCAG00000053196 PRKD1 (ENSFCAG00000014491) G2E3 (ENSFCAG00000001645) SCFD1 (ENSFCAG00000028507) COCH (ENSFCAG00000011638) STRN3 (ENSFCAG00000013708) AP4S1 (ENSFCAG00000005738) #22 HECTD1 (ENSFCAG00000001734) #23 ENSFCAG00000038310 HEATR5A (ENSFCAG00000014756) DTD2 (ENSFCAG00000031441) GPR33 (ENSFCAG00000030877) NUBPL (ENSFCAG00000024538) ARHGAP5 (ENSFCAG00000024536) AKAP6 (ENSFCAG00000010934) NPAS3 (ENSFCAG00000041731) EGLN3 (ENSFCAG00000040826) ENSFCAG00000023772 SPTSSA (ENSFCAG00000042893) EAPP (ENSFCAG00000030251) SNX6 (ENSFCAG00000018851) CFL2 (ENSFCAG00000008480) Cat MODERN SPECIES 252 ENSFCAG00000018360 TBX22 (ENSFCAG00000002301) ITM2A (ENSFCAG00000007957) P2RY10 (ENSFCAG00000035535) CYSLTR1 (ENSFCAG00000024786) ENSFCAG00000022156 TAF9B (ENSFCAG00000025493) ENSFCAG00000013209 ENSFCAG00000034406 ENSFCAG00000053752 ATP7A (ENSFCAG00000022051) COX7B (ENSFCAG00000033601) MAGT1 (ENSFCAG00000024932) ATRX (ENSFCAG00000030040) FGF16 (ENSFCAG00000029609) ENSFCAG00000025177 #22 PBDC1 (ENSFCAG00000027255) MAGEE2 (ENSFCAG00000027322) ZDHHC15 (ENSFCAG00000014128) ENSFCAG00000042637 ENSFCAG00000034660 ENSFCAG00000049082 UPRT (ENSFCAG00000015059) ENSFCAG00000025696 ABCB7 (ENSFCAG00000009557) RLIM (ENSFCAG00000003136) SLC16A2 (ENSFCAG00000008075) ZCCHC13 (ENSFCAG00000034344) ENSFCAG00000034997 ENSFCAG00000040388 ENSFCAG00000022629 Laurasiatheria_c ANCESTRAL SPECIES 1 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Chiroptera ANCESTRAL SPECIES 34 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00940000155573 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Megabat MODERN SPECIES 3690 COCH (ENSPVAG00000017157) STRN3 (ENSPVAG00000017159) AP4S1 (ENSPVAG00000017161) #22 HECTD1 (ENSPVAG00000017163) #23 HEATR5A (ENSPVAG00000017172) DTD2 (ENSPVAG00000017175) NUBPL (ENSPVAG00000017177) Microchiroptera ANCESTRAL SPECIES 29 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000160678.a ENSGT00940000155573 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Microbat MODERN SPECIES 959 UBFD1 (ENSMLUG00000012134) EARS2 (ENSMLUG00000012120) GGA2 (ENSMLUG00000012106) COG7 (ENSMLUG00000012090) SCNN1B (ENSMLUG00000012080) SCNN1G (ENSMLUG00000006676) USP31 (ENSMLUG00000005833) ENSMLUG00000028345 ENSMLUG00000028038 PRKD1 (ENSMLUG00000010770) ENSMLUG00000027139 G2E3 (ENSMLUG00000000531) SCFD1 (ENSMLUG00000000542) COCH (ENSMLUG00000011622) STRN3 (ENSMLUG00000011642) AP4S1 (ENSMLUG00000011671) #22 HECTD1 (ENSMLUG00000013003) #23 HEATR5A (ENSMLUG00000005763) DTD2 (ENSMLUG00000005789) NUBPL (ENSMLUG00000004368) ARHGAP5 (ENSMLUG00000026153) AKAP6 (ENSMLUG00000007138) NPAS3 (ENSMLUG00000016973) EGLN3 (ENSMLUG00000014716) SPTSSA (ENSMLUG00000013821) EAPP (ENSMLUG00000013814) ENSMLUG00000030716 SNX6 (ENSMLUG00000007049) BAZ1A (ENSMLUG00000006672) ENSMLUG00000023750 SRP54 (ENSMLUG00000008958) Greater horseshoe bat DUPLICATION Greater horseshoe bat MODERN SPECIES 24 CMA1 (ENSRFEG00010000956) ENSRFEG00010000974 ENSRFEG00010000989 ENSRFEG00010000996 ENSRFEG00010001016 STXBP6 (ENSRFEG00010001035) ENSRFEG00010001065 NOVA1 (ENSRFEG00010001123) ENSRFEG00010001154 PRKD1 (ENSRFEG00010001259) G2E3 (ENSRFEG00010001340) SCFD1 (ENSRFEG00010001418) ENSRFEG00010001476 COCH (ENSRFEG00010001503) STRN3 (ENSRFEG00010001558) AP4S1 (ENSRFEG00010001649) #22 HECTD1 (ENSRFEG00010001711) #23 HEATR5A (ENSRFEG00010001860) DTD2 (ENSRFEG00010002009) GPR33 (ENSRFEG00010002026) NUBPL (ENSRFEG00010002035) ARHGAP5 (ENSRFEG00010002064) ENSRFEG00010002109 AKAP6 (ENSRFEG00010002160) NPAS3 (ENSRFEG00010002279) EGLN3 (ENSRFEG00010002399) SPTSSA (ENSRFEG00010002421) EAPP (ENSRFEG00010002434) SNX6 (ENSRFEG00010002499) ENSRFEG00010002540 CFL2 (ENSRFEG00010002557) Greater horseshoe bat MODERN SPECIES 1 ENSRFEG00010020251 DDX11 (ENSRFEG00010020210) FKBP4 (ENSRFEG00010020174) ITFG2 (ENSRFEG00010020149) NRIP2 (ENSRFEG00010020137) TEX52 (ENSRFEG00010020115) FOXM1 (ENSRFEG00010020006) RHNO1 (ENSRFEG00010019970) TULP3 (ENSRFEG00010019949) TEAD4 (ENSRFEG00010019884) TSPAN9 (ENSRFEG00010019826) TSPAN11 (ENSRFEG00010019754) PRMT8 (ENSRFEG00010019627) CRACR2A (ENSRFEG00010019586) PARP11 (ENSRFEG00010019492) ENSRFEG00010019453 #22 ENSRFEG00010019429 CCND2 (ENSRFEG00010019410) TIGAR (ENSRFEG00010019362) FGF23 (ENSRFEG00010019321) FGF6 (ENSRFEG00010019293) C12orf4 (ENSRFEG00010019269) RAD51AP1 (ENSRFEG00010019230) DYRK4 (ENSRFEG00010019022) AKAP3 (ENSRFEG00010018980) NDUFA9 (ENSRFEG00010018944) GALNT8 (ENSRFEG00010018902) TMCC3 (ENSRFEG00010018851) CEP83 (ENSRFEG00010018746) PLXNC1 (ENSRFEG00010018545) ENSRFEG00010018443 Equus ANCESTRAL SPECIES 54 ENSGT00940000156499 ENSGT00940000155573 ENSGT00950000183087.A.a.b.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00440000034918.q.b.b ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Donkey MODERN SPECIES 11 ENSEASG00005018535 ENSEASG00005026647 ENSEASG00005030376 ENSEASG00005018648 ENSEASG00005025548 ENSEASG00005030567 ENSEASG00005018651 ENSEASG00005018652 ENSEASG00005018653 PRKD1 (ENSEASG00005000023) ENSEASG00005000061 G2E3 (ENSEASG00005000139) SCFD1 (ENSEASG00005000580) COCH (ENSEASG00005000969) STRN3 (ENSEASG00005001153) AP4S1 (ENSEASG00005034840) #22 HECTD1 (ENSEASG00005002686) #23 ENSEASG00005003251 HEATR5A (ENSEASG00005003563) DTD2 (ENSEASG00005028650) GPR33 (ENSEASG00005005695) NUBPL (ENSEASG00005005696) ARHGAP5 (ENSEASG00005005703) AKAP6 (ENSEASG00005005719) NPAS3 (ENSEASG00005005778) EGLN3 (ENSEASG00005028459) SPTSSA (ENSEASG00005026736) EAPP (ENSEASG00005026397) ENSEASG00005009746 ENSEASG00005034847 CFL2 (ENSEASG00005001781) Horse MODERN SPECIES ENSECAG00000008322 ENSECAG00000060000 ENSECAG00000059009 ENSECAG00000052415 ENSECAG00000041707 ENSECAG00000054592 STXBP6 (ENSECAG00000016835) NOVA1 (ENSECAG00000037301) ENSECAG00000050239 FOXG1 (ENSECAG00000030913) PRKD1 (ENSECAG00000005719) G2E3 (ENSECAG00000020895) SCFD1 (ENSECAG00000002972) COCH (ENSECAG00000021944) STRN3 (ENSECAG00000010464) AP4S1 (ENSECAG00000021753) #22 HECTD1 (ENSECAG00000023505) #23 ENSECAG00000031422 HEATR5A (ENSECAG00000015912) DTD2 (ENSECAG00000016348) GPR33 (ENSECAG00000039612) NUBPL (ENSECAG00000016526) ENSECAG00000058754 ENSECAG00000033699 ARHGAP5 (ENSECAG00000017271) ENSECAG00000046933 ENSECAG00000048271 AKAP6 (ENSECAG00000019940) ENSECAG00000044670 NPAS3 (ENSECAG00000021888) EGLN3 (ENSECAG00000005086) Artiodactyla ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 Artiodactyla_a ANCESTRAL SPECIES 2 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Artiodactyla_b ANCESTRAL SPECIES 2 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Pecora ANCESTRAL SPECIES 18 ENSGT01030000234551.k.d.b.a.a.b.i ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a.e.a ENSGT01030000234551.k.d.b.a.a.a.a.f ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a ENSGT01030000234551.k.d.b.b.c.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000163541.g ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183000.c.b ENSGT00940000158135 Yarkand deer DUPLICATION Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 370 ENSCHYG00000018784 #22 Yarkand deer MODERN SPECIES 1064 ENSCHYG00000009018 #22 Yarkand deer DUPLICATION Yarkand deer DUPLICATION Yarkand deer MODERN SPECIES 4 LOXL1 (ENSCHYG00000020877) ENSCHYG00000020922 ENSCHYG00000021005 ENSCHYG00000021099 GZMB (ENSCHYG00000021148) STXBP6 (ENSCHYG00000021255) NOVA1 (ENSCHYG00000021362) ENSCHYG00000021616 ENSCHYG00000021647 ENSCHYG00000021689 ENSCHYG00000022162 ENSCHYG00000022282 ENSCHYG00000022664 ENSCHYG00000022706 ENSCHYG00000022798 ENSCHYG00000022926 #22 ENSCHYG00000023105 #23 ENSCHYG00000023175 ENSCHYG00000023238 ENSCHYG00000023264 ENSCHYG00000023278 ENSCHYG00000023411 ENSCHYG00000023459 ENSCHYG00000023691 ENSCHYG00000023954 ENSCHYG00000024112 ENSCHYG00000024190 ENSCHYG00000004572 ENSCHYG00000004693 ENSCHYG00000004784 #22 ENSCHYG00000004808 #23 Yarkand deer MODERN SPECIES 4 ENSCHYG00000022798 ENSCHYG00000022926 #22 ENSCHYG00000023105 #23 ENSCHYG00000023175 ENSCHYG00000023238 ENSCHYG00000023264 ENSCHYG00000023278 ENSCHYG00000023411 ENSCHYG00000023459 ENSCHYG00000023691 ENSCHYG00000023954 ENSCHYG00000024112 ENSCHYG00000024190 ENSCHYG00000004572 ENSCHYG00000004693 ENSCHYG00000004784 #22 ENSCHYG00000004808 #23 ENSCHYG00000004859 ENSCHYG00000005154 ENSCHYG00000005175 ENSCHYG00000005213 ENSCHYG00000005261 ENSCHYG00000005283 ENSCHYG00000005372 ENSCHYG00000005433 NPAS3 (ENSCHYG00000005548) EGLN3 (ENSCHYG00000006118) ENSCHYG00000006192 SPTSSA (ENSCHYG00000006204) ENSCHYG00000006229 EAPP (ENSCHYG00000006243) Yarkand deer MODERN SPECIES 3 ACIN1 (ENSCHYG00000015090) CDH24 (ENSCHYG00000016351) PSMB11 (ENSCHYG00000016390) ENSCHYG00000016436 C14orf93 (ENSCHYG00000016592) AJUBA (ENSCHYG00000016731) HAUS4 (ENSCHYG00000016879) PRMT5 (ENSCHYG00000017109) RBM23 (ENSCHYG00000018246) REM2 (ENSCHYG00000018358) LRP10 (ENSCHYG00000018426) MMP14 (ENSCHYG00000018620) SLC7A7 (ENSCHYG00000018767) ENSCHYG00000018959 OXA1L (ENSCHYG00000019267) ENSCHYG00000019500 #22 ENSCHYG00000019651 ABHD4 (ENSCHYG00000019707) ENSCHYG00000019819 ENSCHYG00000019884 TRDV3 (ENSCHYG00000020003) ENSCHYG00000009457 TRDV2 (ENSCHYG00000009486) ENSCHYG00000009499 OR4E1 (ENSCHYG00000009527) OR4E2 (ENSCHYG00000009552) ENSCHYG00000009578 OR10G3 (ENSCHYG00000009604) ENSCHYG00000009619 SALL2 (ENSCHYG00000009676) METTL3 (ENSCHYG00000009777) Yarkand deer MODERN SPECIES 4 GSKIP (ENSCHYG00000024574) ATG2B (ENSCHYG00000024459) ENSCHYG00000024448 ENSCHYG00000024438 BDKRB1 (ENSCHYG00000024385) ENSCHYG00000024356 ENSCHYG00000024343 TCL1A (ENSCHYG00000024332) ENSCHYG00000024310 GLRX5 (ENSCHYG00000024294) SYNE3 (ENSCHYG00000024117) CLMN (ENSCHYG00000024002) DICER1 (ENSCHYG00000023880) GSC (ENSCHYG00000023856) ENSCHYG00000023818 ENSCHYG00000023780 #22 ENSCHYG00000023693 SERPINA5 (ENSCHYG00000023635) SERPINA12 (ENSCHYG00000023498) ENSCHYG00000023475 SERPINA11 (ENSCHYG00000023440) SERPINA1 (ENSCHYG00000023389) SERPINA6 (ENSCHYG00000023370) SERPINA10 (ENSCHYG00000023333) PPP4R4 (ENSCHYG00000023072) ENSCHYG00000023007 ENSCHYG00000022991 ENSCHYG00000022953 DDX24 (ENSCHYG00000022853) OTUB2 (ENSCHYG00000022809) CCDC197 (ENSCHYG00000022755) Percora_a ANCESTRAL SPECIES 20 ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a.e.a ENSGT01030000234551.k.d.b.a.a.a.a.f ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a ENSGT01030000234551.k.d.b.b.c.a.h ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000163541.g ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183000.c.b ENSGT00940000158135 Siberian musk deer MODERN SPECIES 1275 NOVA1 (ENSMMSG00000023209) FOXG1 (ENSMMSG00000023196) PRKD1 (ENSMMSG00000023150) G2E3 (ENSMMSG00000023121) SCFD1 (ENSMMSG00000023110) ENSMMSG00000023033 STRN3 (ENSMMSG00000022995) AP4S1 (ENSMMSG00000022976) #22 HECTD1 (ENSMMSG00000022929) #23 ENSMMSG00000022922 HEATR5A (ENSMMSG00000022882) DTD2 (ENSMMSG00000022862) GPR33 (ENSMMSG00000022855) Bovidae ANCESTRAL SPECIES 20 ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a.e.a ENSGT01030000234551.k.d.b.a.a.a.a.f ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a ENSGT01030000234551.k.d.b.b.c.a.h.b.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000163541.g ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183000.c.b ENSGT00940000158135 Caprinae ANCESTRAL SPECIES 22 ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.c ENSGT01030000234551.k.d.b.a.a.b.i ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a.c ENSGT01030000234551.k.d.b.a.a.a.a.e.a ENSGT01030000234551.k.d.b.a.a.a.a.f ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499.k ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000163541.g ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Goat MODERN SPECIES 13 ENSCHIG00000015005 ENSCHIG00000016245 ENSCHIG00000015715 ENSCHIG00000020332 ENSCHIG00000022005 STXBP6 (ENSCHIG00000018400) ENSCHIG00000026291 NOVA1 (ENSCHIG00000018944) FOXG1 (ENSCHIG00000022539) PRKD1 (ENSCHIG00000017644) ENSCHIG00000019781 G2E3 (ENSCHIG00000025802) SCFD1 (ENSCHIG00000024335) COCH (ENSCHIG00000007305) STRN3 (ENSCHIG00000019005) AP4S1 (ENSCHIG00000016142) #22 HECTD1 (ENSCHIG00000018114) #23 HEATR5A (ENSCHIG00000010796) ENSCHIG00000011637 GPR33 (ENSCHIG00000007857) NUBPL (ENSCHIG00000006710) ARHGAP5 (ENSCHIG00000010874) AKAP6 (ENSCHIG00000024298) NPAS3 (ENSCHIG00000019397) EGLN3 (ENSCHIG00000016948) ENSCHIG00000021678 ENSCHIG00000008804 ENSCHIG00000016213 EAPP (ENSCHIG00000022171) ENSCHIG00000017907 CFL2 (ENSCHIG00000015758) Rambouillet Sheep MODERN SPECIES 9 ENSOARG00020024767 ENSOARG00020003344 ENSOARG00020003394 ENSOARG00020003470 ENSOARG00020003828 ENSOARG00020004153 ENSOARG00020004189 ENSOARG00020004201 NOVA1 (ENSOARG00020004244) FOXG1 (ENSOARG00020004300) PRKD1 (ENSOARG00020004370) G2E3 (ENSOARG00020004595) SCFD1 (ENSOARG00020004656) COCH (ENSOARG00020004770) STRN3 (ENSOARG00020004854) AP4S1 (ENSOARG00020004957) #22 HECTD1 (ENSOARG00020005016) #23 HEATR5A (ENSOARG00020005213) DTD2 (ENSOARG00020005329) GPR33 (ENSOARG00020005349) NUBPL (ENSOARG00020005362) ENSOARG00020005406 ARHGAP5 (ENSOARG00020005438) AKAP6 (ENSOARG00020005604) NPAS3 (ENSOARG00020005668) EGLN3 (ENSOARG00020005770) ENSOARG00020005825 ENSOARG00020005839 SNX6 (ENSOARG00020005948) CFL2 (ENSOARG00020006245) BAZ1A (ENSOARG00020006340) Bovinae ANCESTRAL SPECIES 19 ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a.f ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000154690.p.b ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.l.b ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Bos ANCESTRAL SPECIES 18 ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000154690.p.b ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a ENSGT00390000006205.b ENSGT00940000153431.a.l.b ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.gb ENSGT00950000183000.c.b Bos_a ANCESTRAL SPECIES 10 ENSGT01030000234551.k.d.b.a.a.a.a.e.b.b ENSGT01030000234551.k.d.b.a.a.b.i ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a ENSGT00940000156499 ENSGT00940000155573 ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000154690.p.b ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a ENSGT00390000006205.b ENSGT00940000153431.a.l.b ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.fb.a ENSGT00940000154940.gb ENSGT00950000183000.c.b Domestic yak MODERN SPECIES 8 ENSBGRG00000005384 ENSBGRG00000005401 ENSBGRG00000005455 ENSBGRG00000005616 STXBP6 (ENSBGRG00000005667) NOVA1 (ENSBGRG00000005746) ENSBGRG00000005891 ENSBGRG00000005905 FOXG1 (ENSBGRG00000005921) PRKD1 (ENSBGRG00000006007) G2E3 (ENSBGRG00000006521) SCFD1 (ENSBGRG00000006679) ENSBGRG00000006918 COCH (ENSBGRG00000006941) STRN3 (ENSBGRG00000007105) AP4S1 (ENSBGRG00000007586) #22 HECTD1 (ENSBGRG00000007751) #23 ENSBGRG00000007953 HEATR5A (ENSBGRG00000007992) DTD2 (ENSBGRG00000008143) NUBPL (ENSBGRG00000008223) ENSBGRG00000008307 ENSBGRG00000008358 ARHGAP5 (ENSBGRG00000008406) AKAP6 (ENSBGRG00000008525) NPAS3 (ENSBGRG00000008650) ENSBGRG00000009008 EGLN3 (ENSBGRG00000009029) SPTSSA (ENSBGRG00000009176) EAPP (ENSBGRG00000009269) CFL2 (ENSBGRG00000009349) Wild yak MODERN SPECIES 298 COCH (ENSBMUG00000012618) STRN3 (ENSBMUG00000012562) AP4S1 (ENSBMUG00000012479) #22 HECTD1 (ENSBMUG00000012439) #23 HEATR5A (ENSBMUG00000012373) DTD2 (ENSBMUG00000012325) ENSBMUG00000012283 Bos_b ANCESTRAL SPECIES 18 ENSGT01030000234551.k.d.b.a.a.b.i ENSGT01030000234551.k.d.b.a.a.b.j ENSGT01030000234551.k.d.b.a.a.a.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a ENSGT00390000006205.b ENSGT00940000153431.a.l.b ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.gb ENSGT00950000183000.c.b Hybrid Bos Indicus MODERN SPECIES 13 ENSBIXG00005009049 ENSBIXG00005005146 ENSBIXG00005001958 ENSBIXG00005001991 GZMB (ENSBIXG00005002071) STXBP6 (ENSBIXG00005002110) NOVA1 (ENSBIXG00005005044) ENSBIXG00005002282 FOXG1 (ENSBIXG00005002315) PRKD1 (ENSBIXG00005028790) G2E3 (ENSBIXG00005028509) SCFD1 (ENSBIXG00005028488) ENSBIXG00005028450 COCH (ENSBIXG00005028431) STRN3 (ENSBIXG00005004875) AP4S1 (ENSBIXG00005028268) #22 ENSBIXG00005028238 HECTD1 (ENSBIXG00005028215) #23 ENSBIXG00005028130 HEATR5A (ENSBIXG00005028101) ENSBIXG00005027995 GPR33 (ENSBIXG00005027980) NUBPL (ENSBIXG00005027931) ENSBIXG00005004787 ENSBIXG00005027817 ARHGAP5 (ENSBIXG00005027783) AKAP6 (ENSBIXG00005004751) ENSBIXG00005027635 NPAS3 (ENSBIXG00005004743) EGLN3 (ENSBIXG00005004670) SPTSSA (ENSBIXG00005027156) Cow MODERN SPECIES 13 ENSBTAG00000050353 ENSBTAG00000040134 ENSBTAG00000010828 ENSBTAG00000013055 ENSBTAG00000038080 GZMB (ENSBTAG00000010057) STXBP6 (ENSBTAG00000021291) NOVA1 (ENSBTAG00000002170) ENSBTAG00000031558 FOXG1 (ENSBTAG00000011113) PRKD1 (ENSBTAG00000012789) G2E3 (ENSBTAG00000001617) SCFD1 (ENSBTAG00000017565) COCH (ENSBTAG00000021844) STRN3 (ENSBTAG00000021845) AP4S1 (ENSBTAG00000017201) #22 HECTD1 (ENSBTAG00000032477) #23 HEATR5A (ENSBTAG00000022847) ENSBTAG00000038020 GPR33 (ENSBTAG00000010536) NUBPL (ENSBTAG00000044121) ENSBTAG00000055201 ARHGAP5 (ENSBTAG00000027024) AKAP6 (ENSBTAG00000017719) NPAS3 (ENSBTAG00000004462) EGLN3 (ENSBTAG00000008172) SPTSSA (ENSBTAG00000013981) EAPP (ENSBTAG00000003419) SNX6 (ENSBTAG00000012873) CFL2 (ENSBTAG00000015053) BAZ1A (ENSBTAG00000020164) American bison MODERN SPECIES 3159 ENSBBBG00000005060 G2E3 (ENSBBBG00000009177) ENSBBBG00000009180 SCFD1 (ENSBBBG00000019438) COCH (ENSBBBG00000019503) STRN3 (ENSBBBG00000007277) AP4S1 (ENSBBBG00000019582) #22 HECTD1 (ENSBBBG00000019676) #23 HEATR5A (ENSBBBG00000019715) ENSBBBG00000019724 NUBPL (ENSBBBG00000019729) ARHGAP5 (ENSBBBG00000019759) AKAP6 (ENSBBBG00000019789) NPAS3 (ENSBBBG00000007628) Cetacea ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000154563.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Blue whale MODERN SPECIES 11 ENSBMSG00010012441 GZMH (ENSBMSG00010012451) ENSBMSG00010012468 GZMB (ENSBMSG00010012482) STXBP6 (ENSBMSG00010012498) NOVA1 (ENSBMSG00010012536) ENSBMSG00010012567 ENSBMSG00010012582 ENSBMSG00010012592 FOXG1 (ENSBMSG00010012602) PRKD1 (ENSBMSG00010012633) ENSBMSG00010012692 SCFD1 (ENSBMSG00010012723) COCH (ENSBMSG00010012783) STRN3 (ENSBMSG00010012838) AP4S1 (ENSBMSG00010012875) #22 HECTD1 (ENSBMSG00010012906) #23 HEATR5A (ENSBMSG00010012932) DTD2 (ENSBMSG00010012949) GPR33 (ENSBMSG00010012958) NUBPL (ENSBMSG00010012964) ARHGAP5 (ENSBMSG00010012978) AKAP6 (ENSBMSG00010013021) NPAS3 (ENSBMSG00010013089) EGLN3 (ENSBMSG00010013202) ENSBMSG00010013221 ENSBMSG00010013231 ENSBMSG00010013245 ENSBMSG00010013286 ENSBMSG00010013306 ENSBMSG00010013323 Odontoceti ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000154563.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Sperm whale MODERN SPECIES 2 ENSPCTG00005005862 ENSPCTG00005005891 GZMH (ENSPCTG00005005924) ENSPCTG00005005984 GZMB (ENSPCTG00005006025) STXBP6 (ENSPCTG00005006076) NOVA1 (ENSPCTG00005006112) ENSPCTG00005006193 FOXG1 (ENSPCTG00005006210) PRKD1 (ENSPCTG00005006240) ENSPCTG00005006324 G2E3 (ENSPCTG00005006361) SCFD1 (ENSPCTG00005006460) COCH (ENSPCTG00005006564) STRN3 (ENSPCTG00005006776) AP4S1 (ENSPCTG00005006956) #22 HECTD1 (ENSPCTG00005007027) #23 ENSPCTG00005007130 HEATR5A (ENSPCTG00005007185) DTD2 (ENSPCTG00005007351) GPR33 (ENSPCTG00005007371) ENSPCTG00005007379 ENSPCTG00005007388 NUBPL (ENSPCTG00005007415) ENSPCTG00005007465 ARHGAP5 (ENSPCTG00005007494) AKAP6 (ENSPCTG00005007589) NPAS3 (ENSPCTG00005007723) EGLN3 (ENSPCTG00005008171) SPTSSA (ENSPCTG00005008208) ENSPCTG00005008216 Odontoceti_a ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000154563.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B.l ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000015821.h ENSGT00390000002766.b.b ENSGT00390000001332.m ENSGT00940000154940 Odontoceti_b ANCESTRAL SPECIES 2 ENSGT01000000214889 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT01100000263504.a.b.a.b.a.b.ib ENSGT00940000154563.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B.l ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.m ENSGT00940000178928 ENSGT00940000154940 Monodontidae ANCESTRAL SPECIES 11 ENSGT01100000263511.b.a.a.a.b.a.a.a.b.a.b.a.a.b.a.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT01100000263504.a.b.a.b.a.b.ib ENSGT00940000154563.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B.l ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.m ENSGT00940000178928 ENSGT00940000154940 Narwhal MODERN SPECIES 308 ENSMMNG00015017063 GZMH (ENSMMNG00015017095) ENSMMNG00015017165 GZMB (ENSMMNG00015017321) STXBP6 (ENSMMNG00015017391) NOVA1 (ENSMMNG00015017472) ENSMMNG00015017696 ENSMMNG00015017733 FOXG1 (ENSMMNG00015017758) PRKD1 (ENSMMNG00015017800) G2E3 (ENSMMNG00015017922) SCFD1 (ENSMMNG00015017990) ENSMMNG00015018060 COCH (ENSMMNG00015018104) STRN3 (ENSMMNG00015018258) AP4S1 (ENSMMNG00015018404) #22 HECTD1 (ENSMMNG00015018463) #23 HEATR5A (ENSMMNG00015018679) DTD2 (ENSMMNG00015018797) GPR33 (ENSMMNG00015018815) NUBPL (ENSMMNG00015018841) ENSMMNG00015018891 ARHGAP5 (ENSMMNG00015018917) AKAP6 (ENSMMNG00015018988) NPAS3 (ENSMMNG00015019078) EGLN3 (ENSMMNG00015019291) SPTSSA (ENSMMNG00015019349) ENSMMNG00015019371 ENSMMNG00015019404 SNX6 (ENSMMNG00015019443) CFL2 (ENSMMNG00015019505) Beluga whale MODERN SPECIES 44 ENSDLEG00000018089 ENSDLEG00000018087 GZMH (ENSDLEG00000018044) ENSDLEG00000017935 GZMB (ENSDLEG00000017882) STXBP6 (ENSDLEG00000017850) NOVA1 (ENSDLEG00000017821) ENSDLEG00000017806 ENSDLEG00000017774 FOXG1 (ENSDLEG00000017768) PRKD1 (ENSDLEG00000017654) G2E3 (ENSDLEG00000017592) SCFD1 (ENSDLEG00000016160) COCH (ENSDLEG00000015954) STRN3 (ENSDLEG00000015905) AP4S1 (ENSDLEG00000015895) #22 HECTD1 (ENSDLEG00000015830) #23 HEATR5A (ENSDLEG00000013600) DTD2 (ENSDLEG00000013452) GPR33 (ENSDLEG00000013450) NUBPL (ENSDLEG00000013432) ENSDLEG00000012791 ARHGAP5 (ENSDLEG00000012779) ENSDLEG00000012755 ENSDLEG00000012743 ENSDLEG00000012728 NPAS3 (ENSDLEG00000012702) EGLN3 (ENSDLEG00000012687) ENSDLEG00000012666 SPTSSA (ENSDLEG00000012661) ENSDLEG00000012640 Vaquita MODERN SPECIES 11 GZMH (ENSPSNG00000014903) ENSPSNG00000015017 GZMB (ENSPSNG00000015289) STXBP6 (ENSPSNG00000015449) NOVA1 (ENSPSNG00000015532) ENSPSNG00000015685 ENSPSNG00000015742 ENSPSNG00000015766 FOXG1 (ENSPSNG00000015806) PRKD1 (ENSPSNG00000015859) G2E3 (ENSPSNG00000015993) SCFD1 (ENSPSNG00000016119) ENSPSNG00000016285 COCH (ENSPSNG00000016321) STRN3 (ENSPSNG00000016653) AP4S1 (ENSPSNG00000016811) #22 HECTD1 (ENSPSNG00000016911) #23 HEATR5A (ENSPSNG00000017090) DTD2 (ENSPSNG00000017275) NUBPL (ENSPSNG00000017395) ENSPSNG00000017433 ARHGAP5 (ENSPSNG00000017472) AKAP6 (ENSPSNG00000017615) NPAS3 (ENSPSNG00000017739) EGLN3 (ENSPSNG00000018355) ENSPSNG00000018446 SPTSSA (ENSPSNG00000018482) ENSPSNG00000018496 ENSPSNG00000018519 ENSPSNG00000018564 SNX6 (ENSPSNG00000018667) Dolphin MODERN SPECIES 3098 AP4S1 (ENSTTRG00000003740) #22 HECTD1 (ENSTTRG00000003749) #23 HEATR5A (ENSTTRG00000003780) DTD2 (ENSTTRG00000003788) Camelidae ANCESTRAL SPECIES 41 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Arabian camel MODERN SPECIES 32 SDR39U1 (ENSCDRG00005007148) ENSCDRG00005007233 ENSCDRG00005007274 CTSG (ENSCDRG00005007532) GZMB (ENSCDRG00005007583) ENSCDRG00005007809 ENSCDRG00005012488 STXBP6 (ENSCDRG00005012893) NOVA1 (ENSCDRG00005012968) ENSCDRG00005013058 PRKD1 (ENSCDRG00005013080) G2E3 (ENSCDRG00005013242) SCFD1 (ENSCDRG00005013449) COCH (ENSCDRG00005013624) STRN3 (ENSCDRG00005013738) AP4S1 (ENSCDRG00005014200) #22 HECTD1 (ENSCDRG00005014317) #23 ENSCDRG00005014715 HEATR5A (ENSCDRG00005014747) DTD2 (ENSCDRG00005015091) GPR33 (ENSCDRG00005015130) NUBPL (ENSCDRG00005015152) ARHGAP5 (ENSCDRG00005015272) AKAP6 (ENSCDRG00005015475) ENSCDRG00005015572 EGLN3 (ENSCDRG00005015624) ENSCDRG00005015685 EAPP (ENSCDRG00005015710) SNX6 (ENSCDRG00005015791) CFL2 (ENSCDRG00005016024) BAZ1A (ENSCDRG00005016142) Alpaca MODERN SPECIES 3130 G2E3 (ENSVPAG00000011672) SCFD1 (ENSVPAG00000011674) COCH (ENSVPAG00000011675) STRN3 (ENSVPAG00000011677) AP4S1 (ENSVPAG00000011678) #22 HECTD1 (ENSVPAG00000011679) #23 HEATR5A (ENSVPAG00000011680) DTD2 (ENSVPAG00000011684) NUBPL (ENSVPAG00000011685) Suina ANCESTRAL SPECIES 30 ENSGT00940000160923 ENSGT00940000161519 ENSGT00940000162110 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Chacoan peccary MODERN SPECIES 883 KHNYN (ENSCWAG00000017079) SDR39U1 (ENSCWAG00000017148) ENSCWAG00000017344 CTSG (ENSCWAG00000019691) GZMH (ENSCWAG00000019725) GZMB (ENSCWAG00000019878) STXBP6 (ENSCWAG00000019905) ENSCWAG00000019934 NOVA1 (ENSCWAG00000019948) FOXG1 (ENSCWAG00000020028) PRKD1 (ENSCWAG00000020049) G2E3 (ENSCWAG00000020142) SCFD1 (ENSCWAG00000020229) COCH (ENSCWAG00000020293) STRN3 (ENSCWAG00000020364) AP4S1 (ENSCWAG00000020431) #22 HECTD1 (ENSCWAG00000020463) #23 HEATR5A (ENSCWAG00000020563) DTD2 (ENSCWAG00000020644) GPR33 (ENSCWAG00000020655) NUBPL (ENSCWAG00000020665) ARHGAP5 (ENSCWAG00000020683) AKAP6 (ENSCWAG00000020720) NPAS3 (ENSCWAG00000020800) EGLN3 (ENSCWAG00000021081) SPTSSA (ENSCWAG00000021089) EAPP (ENSCWAG00000021095) SNX6 (ENSCWAG00000021128) CFL2 (ENSCWAG00000021171) BAZ1A (ENSCWAG00000021194) ENSCWAG00000021220 Pig MODERN SPECIES 15 ENSSSCG00000029370 GZMH (ENSSSCG00000001978) GZMB (ENSSSCG00000059880) STXBP6 (ENSSSCG00000001977) ENSSSCG00000042858 ENSSSCG00000050140 NOVA1 (ENSSSCG00000024396) ENSSSCG00000046287 FOXG1 (ENSSSCG00000033761) ENSSSCG00000047109 PRKD1 (ENSSSCG00000001975) G2E3 (ENSSSCG00000001974) SCFD1 (ENSSSCG00000001973) COCH (ENSSSCG00000022679) STRN3 (ENSSSCG00000040657) AP4S1 (ENSSSCG00000001972) #22 HECTD1 (ENSSSCG00000001971) #23 ENSSSCG00000001970 ENSSSCG00000061987 DTD2 (ENSSSCG00000026663) GPR33 (ENSSSCG00000025131) ENSSSCG00000044304 NUBPL (ENSSSCG00000001968) ARHGAP5 (ENSSSCG00000001966) AKAP6 (ENSSSCG00000024517) NPAS3 (ENSSSCG00000001964) ENSSSCG00000036652 EGLN3 (ENSSSCG00000001963) SPTSSA (ENSSSCG00000060304) EAPP (ENSSSCG00000001960) SNX6 (ENSSSCG00000040912) Eulipotyphla ANCESTRAL SPECIES 276 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 Hedgehog MODERN SPECIES 15598 AP4S1 (ENSEEUG00000013009) #22 Common shrew MODERN SPECIES 100 ENSSARG00000010064 STRN3 (ENSSARG00000010097) AP4S1 (ENSSARG00000010130) #22 ENSSARG00000010158 #23 Euarchontoglires ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 Euarchontoglires_A ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Tree shrew MODERN SPECIES 5970 ENSTBEG00000015333 #22 Glires ANCESTRAL SPECIES 12 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Lagomorpha ANCESTRAL SPECIES 14 ENSGT00940000160206 ENSGT00940000160923 ENSGT00940000161519 ENSGT00940000162110 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT00940000156499 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Rabbit MODERN SPECIES 8 ENSOCUG00000028992 STXBP6 (ENSOCUG00000005144) ENSOCUG00000033166 ENSOCUG00000026942 NOVA1 (ENSOCUG00000017622) ENSOCUG00000022058 ENSOCUG00000007554 ENSOCUG00000022201 ENSOCUG00000024246 ENSOCUG00000037372 PRKD1 (ENSOCUG00000022585) G2E3 (ENSOCUG00000007824) SCFD1 (ENSOCUG00000007835) COCH (ENSOCUG00000012042) STRN3 (ENSOCUG00000011418) AP4S1 (ENSOCUG00000011430) #22 HECTD1 (ENSOCUG00000003816) #23 ENSOCUG00000002021 HEATR5A (ENSOCUG00000007228) ENSOCUG00000027034 DTD2 (ENSOCUG00000007778) GPR33 (ENSOCUG00000022411) NUBPL (ENSOCUG00000017713) ARHGAP5 (ENSOCUG00000010548) ENSOCUG00000025739 AKAP6 (ENSOCUG00000014205) NPAS3 (ENSOCUG00000010632) ENSOCUG00000008560 ENSOCUG00000024362 EAPP (ENSOCUG00000003226) SNX6 (ENSOCUG00000029421) Pika MODERN SPECIES 5266 AP4S1 (ENSOPRG00000016762) #22 HECTD1 (ENSOPRG00000002296) #23 Rodentia ANCESTRAL SPECIES 3 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Rodentia_A ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Hystricomorpha ANCESTRAL SPECIES 15 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b.t ENSGT01030000234551.k.d.b.a.a.b.s ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00950000182957.a.a.b ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Naked mole-rat female MODERN SPECIES 11 CIDEB (ENSHGLG00000002818) NOP9 (ENSHGLG00000002852) DHRS1 (ENSHGLG00000037207) RABGGTA (ENSHGLG00000002942) ENSHGLG00000003157 ENSHGLG00000003920 ENSHGLG00000043958 ENSHGLG00000002296 ENSHGLG00000043059 ENSHGLG00000045310 ENSHGLG00000036541 ENSHGLG00000004538 COCH (ENSHGLG00000002211) ENSHGLG00000002072 ENSHGLG00000031903 ENSHGLG00000006911 #22 HECTD1 (ENSHGLG00000004613) #23 ENSHGLG00000038178 HEATR5A (ENSHGLG00000002799) ENSHGLG00000038655 DTD2 (ENSHGLG00000046094) GPR33 (ENSHGLG00000019958) ENSHGLG00000001878 NUBPL (ENSHGLG00000043820) ENSHGLG00000003444 ENSHGLG00000043700 ENSHGLG00000003356 ENSHGLG00000050973 ENSHGLG00000048569 ENSHGLG00000036198 ENSHGLG00000050257 Hystricomorpha_a ANCESTRAL SPECIES 18 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b.t ENSGT01030000234551.k.d.b.a.a.b.s ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00950000182957.a.a.b ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Guinea pig MODERN SPECIES 77 ENSCPOG00000031139 ENSCPOG00000024606 ENSCPOG00000024349 ENSCPOG00000022248 STXBP6 (ENSCPOG00000033780) NOVA1 (ENSCPOG00000030872) PRKD1 (ENSCPOG00000004855) G2E3 (ENSCPOG00000002781) ENSCPOG00000013059 SCFD1 (ENSCPOG00000007229) COCH (ENSCPOG00000015577) STRN3 (ENSCPOG00000015579) AP4S1 (ENSCPOG00000005118) #22 HECTD1 (ENSCPOG00000013566) #23 ENSCPOG00000036916 HEATR5A (ENSCPOG00000015747) DTD2 (ENSCPOG00000036705) GPR33 (ENSCPOG00000038573) NUBPL (ENSCPOG00000010163) ENSCPOG00000030336 ARHGAP5 (ENSCPOG00000007798) Hystricomorpha_b ANCESTRAL SPECIES 18 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b.t ENSGT01030000234551.k.d.b.a.a.b.s ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00950000182957.a.a.b ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Long-tailed chinchilla DUPLICATION Long-tailed chinchilla MODERN SPECIES 116 ENSCLAG00000011419 ENSCLAG00000010999 ENSCLAG00000010184 ENSCLAG00000010208 GZMH (ENSCLAG00000010860) ENSCLAG00000010055 STXBP6 (ENSCLAG00000009408) NOVA1 (ENSCLAG00000008948) ENSCLAG00000015104 FOXG1 (ENSCLAG00000011906) PRKD1 (ENSCLAG00000011245) G2E3 (ENSCLAG00000008721) SCFD1 (ENSCLAG00000012279) COCH (ENSCLAG00000011067) ENSCLAG00000011538 ENSCLAG00000009036 #22 HECTD1 (ENSCLAG00000011096) #23 HEATR5A (ENSCLAG00000009555) DTD2 (ENSCLAG00000014737) GPR33 (ENSCLAG00000013344) NUBPL (ENSCLAG00000011929) ARHGAP5 (ENSCLAG00000015975) AKAP6 (ENSCLAG00000013553) NPAS3 (ENSCLAG00000013939) ENSCLAG00000011029 EGLN3 (ENSCLAG00000010720) ENSCLAG00000012005 EAPP (ENSCLAG00000013007) SNX6 (ENSCLAG00000012353) ENSCLAG00000012876 BAZ1A (ENSCLAG00000015173) Long-tailed chinchilla MODERN SPECIES 132 ZNF365 (ENSCLAG00000010746) ADO (ENSCLAG00000010337) EGR2 (ENSCLAG00000009233) ENSCLAG00000010415 NRBF2 (ENSCLAG00000011072) JMJD1C (ENSCLAG00000012242) REEP3 (ENSCLAG00000012622) ENSCLAG00000012770 ENSCLAG00000009474 CTNNA3 (ENSCLAG00000010308) LRRTM3 (ENSCLAG00000011661) DNAJC12 (ENSCLAG00000012847) SIRT1 (ENSCLAG00000015502) HERC4 (ENSCLAG00000016138) MYPN (ENSCLAG00000011004) ENSCLAG00000014026 #22 PBLD (ENSCLAG00000010284) HNRNPH3 (ENSCLAG00000010680) RUFY2 (ENSCLAG00000012405) DNA2 (ENSCLAG00000012086) SLC25A16 (ENSCLAG00000015512) CCAR1 (ENSCLAG00000011807) THBS4 (ENSCLAG00000009452) MTX3 (ENSCLAG00000011076) CMYA5 (ENSCLAG00000009334) TENT2 (ENSCLAG00000010023) HOMER1 (ENSCLAG00000010571) JMY (ENSCLAG00000009333) BHMT (ENSCLAG00000010253) BHMT2 (ENSCLAG00000013633) DMGDH (ENSCLAG00000014854) Degu DUPLICATION Degu MODERN SPECIES 331 ENSODEG00000002423 #22 ENSODEG00000002362 ENSODEG00000002343 ENSODEG00000002260 ENSODEG00000002224 ENSODEG00000002218 Degu MODERN SPECIES 127 ENSODEG00000005143 ENSODEG00000005132 FOXG1 (ENSODEG00000005094) ENSODEG00000019116 ENSODEG00000005027 PRKD1 (ENSODEG00000004844) ENSODEG00000004710 G2E3 (ENSODEG00000004806) SCFD1 (ENSODEG00000004638) COCH (ENSODEG00000004531) STRN3 (ENSODEG00000004497) ENSODEG00000004725 #22 HECTD1 (ENSODEG00000004383) #23 ENSODEG00000019035 HEATR5A (ENSODEG00000003991) ENSODEG00000003834 ENSODEG00000003785 NUBPL (ENSODEG00000008332) ENSODEG00000008269 ENSODEG00000008253 ARHGAP5 (ENSODEG00000008123) AKAP6 (ENSODEG00000008112) ENSODEG00000008077 NPAS3 (ENSODEG00000007900) STRC (ENSODEG00000007474) ENSODEG00000007361 ENSODEG00000005621 Sciuridae ANCESTRAL SPECIES 8 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Marmotini ANCESTRAL SPECIES 15 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.a.a.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Marmotini_b ANCESTRAL SPECIES 108 ENSGT01030000234551.k.d.b.a.a.a.b.b.b.i.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b.j.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Arctic ground squirrel MODERN SPECIES 18 ENSUPAG00010014330 ENSUPAG00010014315 ENSUPAG00010014307 ENSUPAG00010012638 ENSUPAG00010012609 STXBP6 (ENSUPAG00010012595) NOVA1 (ENSUPAG00010012581) ENSUPAG00010012575 FOXG1 (ENSUPAG00010012563) PRKD1 (ENSUPAG00010012522) G2E3 (ENSUPAG00010012503) SCFD1 (ENSUPAG00010012422) COCH (ENSUPAG00010012392) STRN3 (ENSUPAG00010012325) AP4S1 (ENSUPAG00010012317) #22 HECTD1 (ENSUPAG00010012181) #23 HEATR5A (ENSUPAG00010002104) ENSUPAG00010002029 GPR33 (ENSUPAG00010002026) NUBPL (ENSUPAG00010002012) ARHGAP5 (ENSUPAG00010001993) AKAP6 (ENSUPAG00010001952) ENSUPAG00010001945 NPAS3 (ENSUPAG00010001878) EGLN3 (ENSUPAG00010001862) SPTSSA (ENSUPAG00010001850) ENSUPAG00010001845 EAPP (ENSUPAG00010001833) SNX6 (ENSUPAG00010001786) ENSUPAG00010001776 Squirrel DUPLICATION Squirrel MODERN SPECIES 84 ENSSTOG00000011910 ENSSTOG00000022442 AKR1E2 (ENSSTOG00000014534) ENSSTOG00000031995 KLF6 (ENSSTOG00000007751) PITRM1 (ENSSTOG00000006348) PFKP (ENSSTOG00000006311) ADARB2 (ENSSTOG00000014329) WDR37 (ENSSTOG00000014301) ENSSTOG00000023260 IDI2 (ENSSTOG00000010058) ENSSTOG00000010042 LARP4B (ENSSTOG00000000587) DIP2C (ENSSTOG00000012335) ZMYND11 (ENSSTOG00000010061) ENSSTOG00000034561 #22 CHRM3 (ENSSTOG00000021752) RYR2 (ENSSTOG00000014690) MTR (ENSSTOG00000004093) ACTN2 (ENSSTOG00000007354) HEATR1 (ENSSTOG00000007293) LGALS8 (ENSSTOG00000007266) EDARADD (ENSSTOG00000022830) ERO1B (ENSSTOG00000013810) GPR137B (ENSSTOG00000013802) NID1 (ENSSTOG00000015736) LYST (ENSSTOG00000015713) GNG4 (ENSSTOG00000015712) ENSSTOG00000030497 ENSSTOG00000020260 B3GALNT2 (ENSSTOG00000015705) Squirrel DUPLICATION Squirrel MODERN SPECIES 94 ENSSTOG00000023363 ENSSTOG00000029160 ENSSTOG00000027256 ENSSTOG00000023097 STXBP6 (ENSSTOG00000013479) NOVA1 (ENSSTOG00000020788) ENSSTOG00000027642 FOXG1 (ENSSTOG00000024079) PRKD1 (ENSSTOG00000003873) G2E3 (ENSSTOG00000008924) SCFD1 (ENSSTOG00000008939) COCH (ENSSTOG00000000556) STRN3 (ENSSTOG00000010749) ENSSTOG00000010759 #22 HECTD1 (ENSSTOG00000023965) #23 HEATR5A (ENSSTOG00000004620) ENSSTOG00000025562 GPR33 (ENSSTOG00000027164) NUBPL (ENSSTOG00000004688) ARHGAP5 (ENSSTOG00000020291) AKAP6 (ENSSTOG00000024157) NPAS3 (ENSSTOG00000014736) EGLN3 (ENSSTOG00000027368) SPTSSA (ENSSTOG00000025158) ENSSTOG00000005273 SNX6 (ENSSTOG00000030590) ENSSTOG00000001675 BAZ1A (ENSSTOG00000012204) ENSSTOG00000027145 Squirrel MODERN SPECIES 153 PCDH9 (ENSSTOG00000025475) ENSSTOG00000032665 ENSSTOG00000019374 MAGEB18 (ENSSTOG00000010136) ENSSTOG00000026907 ENSSTOG00000033066 ENSSTOG00000031082 ENSSTOG00000026622 ENSSTOG00000026056 #22 IL1RAPL1 (ENSSTOG00000016269) ENSSTOG00000021156 NR0B1 (ENSSTOG00000025906) TASL (ENSSTOG00000027484) ENSSTOG00000008732 TAB3 (ENSSTOG00000027885) ENSSTOG00000020610 ENSSTOG00000028562 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 1 ENSMMMG00000011431 ENSMMMG00000011415 ENSMMMG00000009778 ENSMMMG00000009755 ENSMMMG00000009734 STXBP6 (ENSMMMG00000009706) NOVA1 (ENSMMMG00000009673) ENSMMMG00000009611 PRKD1 (ENSMMMG00000009545) ENSMMMG00000009512 ENSMMMG00000009483 ENSMMMG00000009462 SCFD1 (ENSMMMG00000009409) COCH (ENSMMMG00000009368) STRN3 (ENSMMMG00000007068) AP4S1 (ENSMMMG00000007043) #22 HECTD1 (ENSMMMG00000006978) #23 HEATR5A (ENSMMMG00000006921) DTD2 (ENSMMMG00000006910) GPR33 (ENSMMMG00000006908) NUBPL (ENSMMMG00000006890) ENSMMMG00000006876 ARHGAP5 (ENSMMMG00000006856) ENSMMMG00000006834 ENSMMMG00000006799 EGLN3 (ENSMMMG00000006788) SPTSSA (ENSMMMG00000006776) ENSMMMG00000006766 EAPP (ENSMMMG00000006761) ENSMMMG00000006742 ENSMMMG00000006738 Alpin marmot MODERN SPECIES TRMT6 (ENSMMMG00000000614) CHGB (ENSMMMG00000000597) SHLD1 (ENSMMMG00000000588) GPCPD1 (ENSMMMG00000000455) PROKR2 (ENSMMMG00000000400) CDS2 (ENSMMMG00000000346) ENSMMMG00000000309 TMEM230 (ENSMMMG00000000268) ENSMMMG00000000257 SLC23A2 (ENSMMMG00000000215) RASSF2 (ENSMMMG00000000162) PRND (ENSMMMG00000000142) PRNP (ENSMMMG00000000138) ENSMMMG00000000123 SMOX (ENSMMMG00000000044) ENSMMMG00000023958 #22 PANK2 (ENSMMMG00000023957) MAVS (ENSMMMG00000023955) AP5S1 (ENSMMMG00000023953) CDC25B (ENSMMMG00000023949) CENPB (ENSMMMG00000023947) SPEF1 (ENSMMMG00000023946) ADISSP (ENSMMMG00000023945) HSPA12B (ENSMMMG00000023943) SIGLEC1 (ENSMMMG00000023929) ADAM33 (ENSMMMG00000023924) GFRA4 (ENSMMMG00000023923) ATRN (ENSMMMG00000023922) ENSMMMG00000023921 DNAAF9 (ENSMMMG00000023920) SLC4A11 (ENSMMMG00000023919) Eurasian red squirrel DUPLICATION Eurasian red squirrel MODERN SPECIES 11 ENSSVLG00005004402 GZMB (ENSSVLG00005004217) ENSSVLG00005004187 ENSSVLG00005004176 STXBP6 (ENSSVLG00005004162) ENSSVLG00005004148 ENSSVLG00005004139 NOVA1 (ENSSVLG00005004100) FOXG1 (ENSSVLG00005004066) PRKD1 (ENSSVLG00005003998) ENSSVLG00005003953 SCFD1 (ENSSVLG00005003909) ENSSVLG00005003853 ENSSVLG00005003807 STRN3 (ENSSVLG00005003765) AP4S1 (ENSSVLG00005003726) #22 HECTD1 (ENSSVLG00005003644) #23 HEATR5A (ENSSVLG00005003550) DTD2 (ENSSVLG00005003527) GPR33 (ENSSVLG00005003516) NUBPL (ENSSVLG00005003491) ARHGAP5 (ENSSVLG00005003448) AKAP6 (ENSSVLG00005003395) NPAS3 (ENSSVLG00005003199) EGLN3 (ENSSVLG00005003108) ENSSVLG00005003092 ENSSVLG00005003086 ENSSVLG00005003068 ENSSVLG00005003053 ENSSVLG00005003042 ENSSVLG00005003024 Eurasian red squirrel MODERN SPECIES 12 ENSSVLG00005000672 ENSSVLG00005000638 ENSSVLG00005000613 CCDC93 (ENSSVLG00005000586) INSIG2 (ENSSVLG00005000562) EN1 (ENSSVLG00005000531) MARCO (ENSSVLG00005000500) C1QL2 (ENSSVLG00005000478) STEAP3 (ENSSVLG00005000464) C2orf76 (ENSSVLG00005000450) DBI (ENSSVLG00005000415) TMEM37 (ENSSVLG00005000377) SCTR (ENSSVLG00005000343) CFAP221 (ENSSVLG00005000301) TMEM177 (ENSSVLG00005000277) ENSSVLG00005000270 #22 PTPN4 (ENSSVLG00005000228) EPB41L5 (ENSSVLG00005024139) TMEM185B (ENSSVLG00005024068) RALB (ENSSVLG00005024049) INHBB (ENSSVLG00005024036) ENSSVLG00005024019 ENSSVLG00005023991 GLI2 (ENSSVLG00005023981) TFCP2L1 (ENSSVLG00005023914) CLASP1 (ENSSVLG00005023791) NIFK (ENSSVLG00005023724) TSN (ENSSVLG00005023674) ENSSVLG00005023632 ENSSVLG00005023597 ENSSVLG00005023566 Rodentia_B ANCESTRAL SPECIES 7 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Kangaroo rat DUPLICATION Kangaroo rat MODERN SPECIES 487 ENSDORG00000029359 Prkd1 (ENSDORG00000000354) G2e3 (ENSDORG00000010913) Scfd1 (ENSDORG00000013408) Coch (ENSDORG00000006859) Strn3 (ENSDORG00000006860) ENSDORG00000009468 #22 Hectd1 (ENSDORG00000005774) #23 Heatr5a (ENSDORG00000011883) Dtd2 (ENSDORG00000009945) Nubpl (ENSDORG00000013986) Arhgap5 (ENSDORG00000005120) Akap6 (ENSDORG00000011551) Npas3 (ENSDORG00000000860) Kangaroo rat MODERN SPECIES 456 ENSDORG00000029969 #22 ENSDORG00000008588 ENSDORG00000001970 Naa35 (ENSDORG00000001956) Agtpbp1 (ENSDORG00000011166) ENSDORG00000024497 Ntrk2 (ENSDORG00000007365) ENSDORG00000024890 Slc28a3 (ENSDORG00000008007) Rmi1 (ENSDORG00000028852) ENSDORG00000016024 2210016F16Rik (ENSDORG00000016023) Kif27 (ENSDORG00000011169) Gkap1 (ENSDORG00000026066) Ubqln1 (ENSDORG00000015266) Idnk (ENSDORG00000008263) Myomorpha ANCESTRAL SPECIES 7 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Lesser Egyptian jerboa MODERN SPECIES 86 Sdr39u1 (ENSJJAG00000019692) ENSJJAG00000004128 ##22 Cma1 (ENSJJAG00000014442) ENSJJAG00000016083 Ctsg (ENSJJAG00000009878) ENSJJAG00000012054 ENSJJAG00000012531 ENSJJAG00000015223 ENSJJAG00000001002 Nova1 (ENSJJAG00000012915) ENSJJAG00000001174 ENSJJAG00000001269 G2e3 (ENSJJAG00000014439) Coch (ENSJJAG00000019025) Strn3 (ENSJJAG00000019703) Ap4s1 (ENSJJAG00000022804) #22 Hectd1 (ENSJJAG00000001344) #23 Heatr5a (ENSJJAG00000019420) ENSJJAG00000015737 ENSJJAG00000019398 Arhgap5 (ENSJJAG00000022832) Egln3 (ENSJJAG00000013045) ENSJJAG00000003660 Sptssa (ENSJJAG00000014413) ENSJJAG00000015801 Muroidea ANCESTRAL SPECIES 54 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Upper Galilee mountains blind mole rat MODERN SPECIES 1046 G2e3 (ENSNGAG00000005306) Scfd1 (ENSNGAG00000016247) Coch (ENSNGAG00000000675) Strn3 (ENSNGAG00000009581) Ap4s1 (ENSNGAG00000016226) #22 Hectd1 (ENSNGAG00000020429) #23 Heatr5a (ENSNGAG00000019811) ENSNGAG00000011221 Muroidea_A ANCESTRAL SPECIES 15 ENSGT00390000010852 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Murinae ANCESTRAL SPECIES 8 ENSGT00390000010852 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Mus ANCESTRAL SPECIES 10 ENSGT00390000010852 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Mus_A ANCESTRAL SPECIES 17 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT01100000267143 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Mus_B ANCESTRAL SPECIES 17 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT01100000267143 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Mouse MODERN SPECIES 3 Dock4 (ENSMUSG00000035954) Immp2l (ENSMUSG00000056899) Lrrn3 (ENSMUSG00000036295) Dnajb9 (ENSMUSG00000014905) Pnpla8 (ENSMUSG00000036257) Nrcam (ENSMUSG00000020598) Stxbp6 (ENSMUSG00000046314) Nova1 (ENSMUSG00000021047) Foxg1 (ENSMUSG00000020950) Gm43517 (ENSMUSG00000089922) Prkd1 (ENSMUSG00000002688) G2e3 (ENSMUSG00000035293) Scfd1 (ENSMUSG00000020952) Coch (ENSMUSG00000020953) Strn3 (ENSMUSG00000020954) Ap4s1 (ENSMUSG00000020955) #22 Hectd1 (ENSMUSG00000035247) #23 Heatr5a (ENSMUSG00000035181) Dtd2 (ENSMUSG00000020956) Gpr33 (ENSMUSG00000035148) Nubpl (ENSMUSG00000035142) Arhgap5 (ENSMUSG00000035133) Akap6 (ENSMUSG00000061603) Npas3 (ENSMUSG00000021010) Egln3 (ENSMUSG00000035105) Sptssa (ENSMUSG00000044408) Eapp (ENSMUSG00000054302) Snx6 (ENSMUSG00000005656) Cfl2 (ENSMUSG00000062929) Baz1a (ENSMUSG00000035021) 2700097O09Rik (ENSMUSG00000062198) Mus_C ANCESTRAL SPECIES 11 ENSGT00940000155659 ENSGT00550000075044 ENSGT00940000160513 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT01100000267143 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Steppe mouse MODERN SPECIES 3314 ENSMSIG00000002590 ENSMSIG00000002603 ENSMSIG00000002627 ENSMSIG00000002727 G2e3 (ENSMSIG00000002770) Scfd1 (ENSMSIG00000003039) Coch (ENSMSIG00000003151) Strn3 (ENSMSIG00000003232) Ap4s1 (ENSMSIG00000003653) #22 Hectd1 (ENSMSIG00000003683) #23 ENSMSIG00000003791 Heatr5a (ENSMSIG00000003804) Dtd2 (ENSMSIG00000003964) Gpr33 (ENSMSIG00000003989) Nubpl (ENSMSIG00000004004) Arhgap5 (ENSMSIG00000004050) Akap6 (ENSMSIG00000004164) Npas3 (ENSMSIG00000004473) ENSMSIG00000004706 ENSMSIG00000004720 Egln3 (ENSMSIG00000004731) ENSMSIG00000004766 spretus MODERN SPECIES 3 Nrcam (MGP_SPRETEiJ_G0018568) Stxbp6 (MGP_SPRETEiJ_G0018569) Nova1 (MGP_SPRETEiJ_G0018570) MGP_SPRETEiJ_G0018571 MGP_SPRETEiJ_G0018572 Foxg1 (MGP_SPRETEiJ_G0018573) MGP_SPRETEiJ_G0018574 MGP_SPRETEiJ_G0018575 Prkd1 (MGP_SPRETEiJ_G0018576) MGP_SPRETEiJ_G0018577 MGP_SPRETEiJ_G0018578 G2e3 (MGP_SPRETEiJ_G0018579) Scfd1 (MGP_SPRETEiJ_G0018580) Coch (MGP_SPRETEiJ_G0018581) Strn3 (MGP_SPRETEiJ_G0018582) Ap4s1 (MGP_SPRETEiJ_G0018583) #22 Hectd1 (MGP_SPRETEiJ_G0018584) #23 Heatr5a (MGP_SPRETEiJ_G0018585) Dtd2 (MGP_SPRETEiJ_G0018586) Gpr33 (MGP_SPRETEiJ_G0018587) Nubpl (MGP_SPRETEiJ_G0018588) Arhgap5 (MGP_SPRETEiJ_G0018589) Akap6 (MGP_SPRETEiJ_G0018590) Npas3 (MGP_SPRETEiJ_G0018591) Egln3 (MGP_SPRETEiJ_G0018592) Sptssa (MGP_SPRETEiJ_G0018593) Eapp (MGP_SPRETEiJ_G0018594) Snx6 (MGP_SPRETEiJ_G0018595) Cfl2 (MGP_SPRETEiJ_G0018596) Baz1a (MGP_SPRETEiJ_G0018597) MGP_SPRETEiJ_G0018598 Ryukyu mouse MODERN SPECIES 3 Immp2l (MGP_CAROLIEiJ_G0017722) Lrrn3 (MGP_CAROLIEiJ_G0017723) Dnajb9 (MGP_CAROLIEiJ_G0017724) Pnpla8 (MGP_CAROLIEiJ_G0017725) Nrcam (MGP_CAROLIEiJ_G0017726) Stxbp6 (MGP_CAROLIEiJ_G0017727) Nova1 (MGP_CAROLIEiJ_G0017728) Foxg1 (MGP_CAROLIEiJ_G0017729) MGP_CAROLIEiJ_G0017730 MGP_CAROLIEiJ_G0017731 Prkd1 (MGP_CAROLIEiJ_G0017732) G2e3 (MGP_CAROLIEiJ_G0017733) Scfd1 (MGP_CAROLIEiJ_G0017734) Coch (MGP_CAROLIEiJ_G0017735) Strn3 (MGP_CAROLIEiJ_G0017736) Ap4s1 (MGP_CAROLIEiJ_G0017737) #22 Hectd1 (MGP_CAROLIEiJ_G0017738) #23 Heatr5a (MGP_CAROLIEiJ_G0017739) Dtd2 (MGP_CAROLIEiJ_G0017740) Gpr33 (MGP_CAROLIEiJ_G0017741) Nubpl (MGP_CAROLIEiJ_G0017742) Arhgap5 (MGP_CAROLIEiJ_G0017743) Akap6 (MGP_CAROLIEiJ_G0017744) Npas3 (MGP_CAROLIEiJ_G0017745) Egln3 (MGP_CAROLIEiJ_G0017746) Sptssa (MGP_CAROLIEiJ_G0017747) Eapp (MGP_CAROLIEiJ_G0017748) Snx6 (MGP_CAROLIEiJ_G0017749) Cfl2 (MGP_CAROLIEiJ_G0017750) Baz1a (MGP_CAROLIEiJ_G0017751) MGP_CAROLIEiJ_G0017752 Shrew mouse MODERN SPECIES 20 Dock4 (MGP_PahariEiJ_G0029478) Immp2l (MGP_PahariEiJ_G0029479) Lrrn3 (MGP_PahariEiJ_G0029480) Dnajb9 (MGP_PahariEiJ_G0029481) Pnpla8 (MGP_PahariEiJ_G0029482) Nrcam (MGP_PahariEiJ_G0029483) Stxbp6 (MGP_PahariEiJ_G0029484) Nova1 (MGP_PahariEiJ_G0029485) Foxg1 (MGP_PahariEiJ_G0029486) MGP_PahariEiJ_G0029487 Prkd1 (MGP_PahariEiJ_G0029488) G2e3 (MGP_PahariEiJ_G0029489) Scfd1 (MGP_PahariEiJ_G0029490) Coch (MGP_PahariEiJ_G0029491) Strn3 (MGP_PahariEiJ_G0029492) Ap4s1 (MGP_PahariEiJ_G0029493) #22 Hectd1 (MGP_PahariEiJ_G0029494) #23 Heatr5a (MGP_PahariEiJ_G0029495) Dtd2 (MGP_PahariEiJ_G0029496) Gpr33 (MGP_PahariEiJ_G0029497) Nubpl (MGP_PahariEiJ_G0029498) Arhgap5 (MGP_PahariEiJ_G0029499) Akap6 (MGP_PahariEiJ_G0029500) Npas3 (MGP_PahariEiJ_G0029501) Egln3 (MGP_PahariEiJ_G0029502) Sptssa (MGP_PahariEiJ_G0029503) Eapp (MGP_PahariEiJ_G0029504) Snx6 (MGP_PahariEiJ_G0029505) Cfl2 (MGP_PahariEiJ_G0029506) Baz1a (MGP_PahariEiJ_G0029507) MGP_PahariEiJ_G0029508 Rat MODERN SPECIES 16 Dnajb9 (ENSRNOG00000004006) ENSRNOG00000064508 Pnpla8 (ENSRNOG00000039091) Nrcam (ENSRNOG00000004067) Stxbp6 (ENSRNOG00000004198) Nova1 (ENSRNOG00000031440) ENSRNOG00000068318 RGD1559629 (ENSRNOG00000031317) Foxg1 (ENSRNOG00000047891) Prkd1 (ENSRNOG00000004165) ENSRNOG00000066628 G2e3 (ENSRNOG00000004232) Scfd1 (ENSRNOG00000031203) Coch (ENSRNOG00000005286) Strn3 (ENSRNOG00000060335) Ap4s1 (ENSRNOG00000005765) #22 Hectd1 (ENSRNOG00000006905) #23 Heatr5a (ENSRNOG00000006483) Dtd2 (ENSRNOG00000006727) Gpr33-ps1 (ENSRNOG00000038990) Nubpl (ENSRNOG00000027444) ENSRNOG00000070950 Arhgap5 (ENSRNOG00000004696) Akap6 (ENSRNOG00000004841) Npas3 (ENSRNOG00000068162) ENSRNOG00000066295 Egln3 (ENSRNOG00000005053) Timm23b (ENSRNOG00000031285) Rps10 (ENSRNOG00000066637) Sptssa (ENSRNOG00000004292) Eapp (ENSRNOG00000004509) Cricetidae ANCESTRAL SPECIES 17 ENSGT00390000010852 ENSGT00940000155659 ENSGT00940000160513 ENSGT00940000164174 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Cricetidae_B ANCESTRAL SPECIES 44 ENSGT00390000010852 ENSGT00940000155659 ENSGT00940000160513 ENSGT00550000075044 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00940000172098 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Northern American deer mouse MODERN SPECIES 5 ENSPEMG00000030494 Dnajb9 (ENSPEMG00000025224) Pnpla8 (ENSPEMG00000013308) Nrcam (ENSPEMG00000000666) ENSPEMG00000008750 Stxbp6 (ENSPEMG00000006826) Nova1 (ENSPEMG00000006503) Foxg1 (ENSPEMG00000014163) ENSPEMG00000011512 ENSPEMG00000029110 Prkd1 (ENSPEMG00000011695) G2e3 (ENSPEMG00000014724) Scfd1 (ENSPEMG00000013333) Coch (ENSPEMG00000014561) Strn3 (ENSPEMG00000018694) Ap4s1 (ENSPEMG00000028602) #22 Hectd1 (ENSPEMG00000011192) #23 Heatr5a (ENSPEMG00000014455) Dtd2 (ENSPEMG00000020439) Gpr33 (ENSPEMG00000015422) Nubpl (ENSPEMG00000008972) Arhgap5 (ENSPEMG00000000871) Akap6 (ENSPEMG00000012708) Npas3 (ENSPEMG00000012109) Egln3 (ENSPEMG00000005061) Sptssa (ENSPEMG00000030128) ENSPEMG00000017758 Snx6 (ENSPEMG00000021989) ENSPEMG00000028812 Cfl2 (ENSPEMG00000007781) Baz1a (ENSPEMG00000014114) Prairie vole MODERN SPECIES Zfp639 (ENSMOCG00000020301) Kcnmb3 (ENSMOCG00000016804) Pik3ca (ENSMOCG00000013980) Zmat3 (ENSMOCG00000018844) Kcnmb2 (ENSMOCG00000017078) Egfem1 (ENSMOCG00000018732) Mecom (ENSMOCG00000021596) ENSMOCG00000020206 Actrt3 (ENSMOCG00000015666) Mynn (ENSMOCG00000015696) Lrrc34 (ENSMOCG00000016121) ENSMOCG00000005957 Lrriq4 (ENSMOCG00000004550) Coch (ENSMOCG00000019723) ENSMOCG00000012615 Ap4s1 (ENSMOCG00000007389) #22 Hectd1 (ENSMOCG00000014999) #23 Heatr5a (ENSMOCG00000022578) Dtd2 (ENSMOCG00000013778) Nubpl (ENSMOCG00000014184) Arhgap5 (ENSMOCG00000004835) Akap6 (ENSMOCG00000011185) Npas3 (ENSMOCG00000019190) Egln3 (ENSMOCG00000012694) ENSMOCG00000005461 Sptssa (ENSMOCG00000012586) ENSMOCG00000015865 ENSMOCG00000010297 Snx6 (ENSMOCG00000005706) Cfl2 (ENSMOCG00000001143) ENSMOCG00000021225 Cricetinae ANCESTRAL SPECIES 11 ENSGT00390000010852 ENSGT00940000155659 ENSGT00940000160513 ENSGT00550000075044 ENSGT00940000156246 ENSGT00940000154738.a ENSGT00940000155419 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00640000092775 Chinese hamster chok1gshd MODERN SPECIES 2 ENSCGRG00001009365 DNAJB9 (ENSCGRG00001006614) Pnpla8 (ENSCGRG00001002943) Nrcam (ENSCGRG00001023691) ENSCGRG00001015987 Stxbp6 (ENSCGRG00001016560) ENSCGRG00001015898 Nova1 (ENSCGRG00001024030) ENSCGRG00001023108 Foxg1 (ENSCGRG00001009864) Prkd1 (ENSCGRG00001019739) G2e3 (ENSCGRG00001015112) Scfd1 (ENSCGRG00001013495) Coch (ENSCGRG00001010363) Strn3 (ENSCGRG00001000550) Ap4s1 (ENSCGRG00001023362) #22 Hectd1 (ENSCGRG00001024884) #23 ENSCGRG00001024436 Heatr5a (ENSCGRG00001017067) Dtd2 (ENSCGRG00001015902) Gpr33 (ENSCGRG00001011244) ENSCGRG00001006641 Nubpl (ENSCGRG00001004006) Arhgap5 (ENSCGRG00001002196) ENSCGRG00001009818 Akap6 (ENSCGRG00001015059) Npas3 (ENSCGRG00001014006) Egln3 (ENSCGRG00001011120) Sptssa (ENSCGRG00001009767) Eapp (ENSCGRG00001019760) Snx6 (ENSCGRG00001015718) Golden Hamster MODERN SPECIES 678 Tmem208 (ENSMAUG00000019912) Fbxl9 (ENSMAUG00000020647) Elmo3 (ENSMAUG00000018747) ENSMAUG00000021932 Pnpla8 (ENSMAUG00000018550) ENSMAUG00000004823 ENSMAUG00000012524 Stxbp6 (ENSMAUG00000009926) ENSMAUG00000000995 Foxg1 (ENSMAUG00000019070) Prkd1 (ENSMAUG00000022213) G2e3 (ENSMAUG00000021191) Scfd1 (ENSMAUG00000003557) ENSMAUG00000013698 Strn3 (ENSMAUG00000021272) ENSMAUG00000021341 #22 Hectd1 (ENSMAUG00000004033) #23 Heatr5a (ENSMAUG00000009777) ENSMAUG00000013425 Dtd2 (ENSMAUG00000016991) ENSMAUG00000014362 Nubpl (ENSMAUG00000016658) Primates ANCESTRAL SPECIES 2 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 Haplorrhini ANCESTRAL SPECIES 12 ENSGT00940000162110 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 Tarsier MODERN SPECIES 7074 COCH (ENSTSYG00000000628) STRN3 (ENSTSYG00000000630) AP4S1 (ENSTSYG00000009655) #22 HECTD1 (ENSTSYG00000009661) #23 ENSTSYG00000035488 ENSTSYG00000006884 ENSTSYG00000029203 Simiiformes ANCESTRAL SPECIES 2 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00940000167604 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Catarrhini ANCESTRAL SPECIES 9 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Hominoidea ANCESTRAL SPECIES 12 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00390000010721.a.a.a.a.d ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Gibbon MODERN SPECIES 14 SDR39U1 (ENSNLEG00000015526) CMA1 (ENSNLEG00000015539) CTSG (ENSNLEG00000035806) GZMH (ENSNLEG00000015576) ENSNLEG00000015562 STXBP6 (ENSNLEG00000031616) ENSNLEG00000034166 NOVA1 (ENSNLEG00000033958) PRKD1 (ENSNLEG00000015603) G2E3 (ENSNLEG00000015614) ENSNLEG00000031681 SCFD1 (ENSNLEG00000015659) ENSNLEG00000028472 COCH (ENSNLEG00000015841) STRN3 (ENSNLEG00000015856) ENSNLEG00000015901 #22 HECTD1 (ENSNLEG00000015912) #23 HEATR5A (ENSNLEG00000015975) ENSNLEG00000027180 ACOT4 (ENSNLEG00000016052) ENSNLEG00000030750 DNAL1 (ENSNLEG00000016062) PNMA1 (ENSNLEG00000016068) ENSNLEG00000033162 MIDEAS (ENSNLEG00000016069) PTGR2 (ENSNLEG00000016076) ZNF410 (ENSNLEG00000016090) FAM161B (ENSNLEG00000016114) COQ6 (ENSNLEG00000016122) ENTPD5 (ENSNLEG00000016159) BBOF1 (ENSNLEG00000016175) Hominidae ANCESTRAL SPECIES 14 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00390000010721.a.a.a.a.d ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Orangutan MODERN SPECIES 5 CBLN3 (ENSPPYG00000005706) KHNYN (ENSPPYG00000005708) SDR39U1 (ENSPPYG00000031348) CMA1 (ENSPPYG00000005709) CTSG (ENSPPYG00000005710) GZMH (ENSPPYG00000005711) GZMB (ENSPPYG00000005712) STXBP6 (ENSPPYG00000005713) NOVA1 (ENSPPYG00000031227) ENSPPYG00000030410 PRKD1 (ENSPPYG00000005718) G2E3 (ENSPPYG00000005719) SCFD1 (ENSPPYG00000005720) COCH (ENSPPYG00000005721) STRN3 (ENSPPYG00000005722) ENSPPYG00000005723 #22 HECTD1 (ENSPPYG00000005724) #23 HEATR5A (ENSPPYG00000005725) DTD2 (ENSPPYG00000036770) NUBPL (ENSPPYG00000005727) ARHGAP5 (ENSPPYG00000005729) AKAP6 (ENSPPYG00000005730) NPAS3 (ENSPPYG00000005731) EGLN3 (ENSPPYG00000005732) SPTSSA (ENSPPYG00000005733) EAPP (ENSPPYG00000005735) SNX6 (ENSPPYG00000005736) CFL2 (ENSPPYG00000005737) BAZ1A (ENSPPYG00000005738) SRP54 (ENSPPYG00000005739) FAM177A1 (ENSPPYG00000005740) Homo/Pan/Gorilla group ANCESTRAL SPECIES 12 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00390000010721.a.a.a.a.d ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Gorilla MODERN SPECIES 5 CTSG (ENSGGOG00000013780) GZMH (ENSGGOG00000012428) GZMB (ENSGGOG00000012986) STXBP6 (ENSGGOG00000005321) ENSGGOG00000038355 NOVA1 (ENSGGOG00000016495) ENSGGOG00000009355 PRKD1 (ENSGGOG00000011852) G2E3 (ENSGGOG00000001924) ENSGGOG00000036427 SCFD1 (ENSGGOG00000011007) ENSGGOG00000024446 COCH (ENSGGOG00000025198) ENSGGOG00000042724 STRN3 (ENSGGOG00000006096) ENSGGOG00000003198 #22 HECTD1 (ENSGGOG00000026552) #23 HEATR5A (ENSGGOG00000000655) DTD2 (ENSGGOG00000043676) GPR33 (ENSGGOG00000026905) NUBPL (ENSGGOG00000009764) ARHGAP5 (ENSGGOG00000002593) ENSGGOG00000042101 AKAP6 (ENSGGOG00000025608) ENSGGOG00000041161 ENSGGOG00000022941 ENSGGOG00000037716 EGLN3 (ENSGGOG00000014900) EAPP (ENSGGOG00000007784) SNX6 (ENSGGOG00000007659) CFL2 (ENSGGOG00000038032) Homo/Pan group ANCESTRAL SPECIES 11 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00390000010721.a.a.a.a.d ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b.e ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb ENSGT00950000183000.c.b Human MODERN SPECIES 5 CBLN3 (ENSG00000139899) KHNYN (ENSG00000100441) SDR39U1 (ENSG00000100445) CMA1 (ENSG00000092009) CTSG (ENSG00000100448) GZMH (ENSG00000100450) GZMB (ENSG00000100453) STXBP6 (ENSG00000168952) NOVA1 (ENSG00000139910) FOXG1 (ENSG00000176165) PRKD1 (ENSG00000184304) G2E3 (ENSG00000092140) SCFD1 (ENSG00000092108) COCH (ENSG00000100473) STRN3 (ENSG00000196792) AP4S1 (ENSG00000100478) #22 HECTD1 (ENSG00000092148) #23 HEATR5A (ENSG00000129493) ENSG00000203546 DTD2 (ENSG00000129480) GPR33 (ENSG00000214943) NUBPL (ENSG00000151413) ARHGAP5 (ENSG00000100852) AKAP6 (ENSG00000151320) NPAS3 (ENSG00000151322) EGLN3 (ENSG00000129521) SPTSSA (ENSG00000165389) EAPP (ENSG00000129518) SNX6 (ENSG00000129515) CFL2 (ENSG00000165410) BAZ1A (ENSG00000198604) Pan ANCESTRAL SPECIES 8 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00390000010721.a.a.a.a.d ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b.e ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb ENSGT00950000183000.c.b Bonobo MODERN SPECIES 5 CTSG (ENSPPAG00000012631) GZMH (ENSPPAG00000036072) GZMB (ENSPPAG00000041223) ENSPPAG00000029794 ENSPPAG00000033264 NOVA1 (ENSPPAG00000038980) ENSPPAG00000016025 ENSPPAG00000040567 PRKD1 (ENSPPAG00000037023) G2E3 (ENSPPAG00000028644) SCFD1 (ENSPPAG00000042546) ENSPPAG00000037740 ENSPPAG00000038553 COCH (ENSPPAG00000042223) STRN3 (ENSPPAG00000028044) ENSPPAG00000041450 #22 HECTD1 (ENSPPAG00000036559) #23 HEATR5A (ENSPPAG00000034508) DTD2 (ENSPPAG00000029393) GPR33 (ENSPPAG00000016765) ENSPPAG00000033459 ENSPPAG00000034553 ARHGAP5 (ENSPPAG00000037127) AKAP6 (ENSPPAG00000036668) NPAS3 (ENSPPAG00000028096) ENSPPAG00000004989 EGLN3 (ENSPPAG00000018135) EAPP (ENSPPAG00000030095) SNX6 (ENSPPAG00000037141) CFL2 (ENSPPAG00000007558) ENSPPAG00000008100 Chimpanzee MODERN SPECIES 5 CMA1 (ENSPTRG00000006223) CTSG (ENSPTRG00000006224) GZMB (ENSPTRG00000006226) STXBP6 (ENSPTRG00000006227) ENSPTRG00000052577 NOVA1 (ENSPTRG00000006229) FOXG1 (ENSPTRG00000030783) ENSPTRG00000006231 PRKD1 (ENSPTRG00000006232) G2E3 (ENSPTRG00000006234) SCFD1 (ENSPTRG00000006235) ENSPTRG00000052239 ENSPTRG00000047778 COCH (ENSPTRG00000006237) STRN3 (ENSPTRG00000006238) AP4S1 (ENSPTRG00000006239) #22 HECTD1 (ENSPTRG00000006240) #23 HEATR5A (ENSPTRG00000006241) DTD2 (ENSPTRG00000006244) GPR33 (ENSPTRG00000032557) NUBPL (ENSPTRG00000006245) ARHGAP5 (ENSPTRG00000006246) AKAP6 (ENSPTRG00000006247) NPAS3 (ENSPTRG00000006249) ENSPTRG00000043856 EGLN3 (ENSPTRG00000006250) SPTSSA (ENSPTRG00000006251) EAPP (ENSPTRG00000006252) SNX6 (ENSPTRG00000006253) CFL2 (ENSPTRG00000006254) ENSPTRG00000051817 Cercopithecidae ANCESTRAL SPECIES 7 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Cercopithecinae DUPLICATION Cercopithecinae DUPLICATION Cercopithecinae ANCESTRAL SPECIES 6 ENSGT00390000012242 ENSGT01010000222360.D.b.o.a.a ENSGT00950000183034.C ENSGT01030000234513.A.a.b ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036 ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00900000143774 ENSGT00390000004211 ENSGT01060000248564.a.a ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00910000147078 ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000159115.p ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT00940000153314.a.b.a.k ENSGT01090000260070.D Cercopithecinae_a ANCESTRAL SPECIES 6 ENSGT01010000222287.B.b.a.a.b ENSGT00390000012242 ENSGT01010000222360.D.b.o.a.a ENSGT00950000183034.C ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036 ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00900000143774 ENSGT00390000004211 ENSGT01060000248564.a.a ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00910000147078 ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000159115.p ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D ENSGT00940000158228.a Macaca ANCESTRAL SPECIES 9 ENSGT00390000011103.B.j ENSGT01010000222287.B.b.a.a.b ENSGT00390000012242 ENSGT00950000183034.C ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036 ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00900000143774 ENSGT00390000004211 ENSGT01060000248564.a.a ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00910000147078 ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D ENSGT00940000158228.a ENSGT00940000157785 Macaca_a ANCESTRAL SPECIES 9 ENSGT00390000011103.B.j ENSGT00940000166143.A.a.b.b.b.b.b.a.a.a.a.b.a ENSGT01010000222287.B.b.a.a.b ENSGT00390000012242 ENSGT00950000183034.C ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036 ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00390000004211 ENSGT01060000248564.a.a ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT01090000260070.D ENSGT00940000158228.a ENSGT00940000157785 ENSGT00940000160189 Crab-eating macaque MODERN SPECIES 14 CGA (ENSMFAG00000037707) ZNF292 (ENSMFAG00000045756) SMIM8 (ENSMFAG00000000775) ENSMFAG00000053614 C6orf163 (ENSMFAG00000045620) CFAP206 (ENSMFAG00000035889) ENSMFAG00000056350 SLC35A1 (ENSMFAG00000001045) RARS2 (ENSMFAG00000039420) ENSMFAG00000060786 ORC3 (ENSMFAG00000041907) AKIRIN2 (ENSMFAG00000023644) SPACA1 (ENSMFAG00000046308) CNR1 (ENSMFAG00000040164) RNGTT (ENSMFAG00000030988) ENSMFAG00000031569 #22 PNRC1 (ENSMFAG00000046306) ENSMFAG00000054442 ENSMFAG00000059889 SRSF12 (ENSMFAG00000048779) GABRR2 (ENSMFAG00000043423) UBE2J1 (ENSMFAG00000046333) RRAGD (ENSMFAG00000038149) ANKRD6 (ENSMFAG00000034278) LYRM2 (ENSMFAG00000055976) MDN1 (ENSMFAG00000041968) CASP8AP2 (ENSMFAG00000036833) GJA10 (ENSMFAG00000035012) ENSMFAG00000060642 BACH2 (ENSMFAG00000040061) MAP3K7 (ENSMFAG00000035469) Pig-tailed macaque MODERN SPECIES 79 ENSMNEG00000037112 HTR1E (ENSMNEG00000004973) CGA (ENSMNEG00000045132) ZNF292 (ENSMNEG00000043433) SMIM8 (ENSMNEG00000042949) C6orf163 (ENSMNEG00000045491) CFAP206 (ENSMNEG00000029408) SLC35A1 (ENSMNEG00000038937) RARS2 (ENSMNEG00000043383) ORC3 (ENSMNEG00000030771) AKIRIN2 (ENSMNEG00000040114) ENSMNEG00000045243 SPACA1 (ENSMNEG00000040936) ENSMNEG00000023905 RNGTT (ENSMNEG00000040764) ENSMNEG00000035079 #22 ENSMNEG00000000951 ENSMNEG00000002598 SRSF12 (ENSMNEG00000030957) PM20D2 (ENSMNEG00000037852) GABRR1 (ENSMNEG00000016603) GABRR2 (ENSMNEG00000030830) UBE2J1 (ENSMNEG00000028213) RRAGD (ENSMNEG00000033828) ANKRD6 (ENSMNEG00000043528) ENSMNEG00000035722 MDN1 (ENSMNEG00000042497) CASP8AP2 (ENSMNEG00000041673) GJA10 (ENSMNEG00000011947) BACH2 (ENSMNEG00000038521) MAP3K7 (ENSMNEG00000039436) Cercopithecinae_b ANCESTRAL SPECIES 17 ENSGT00390000008099.w.a.a ENSGT01010000222287.B.b.a.a.b ENSGT00390000012242 ENSGT01010000222360.D.b.o.a.a ENSGT00950000183034.C ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036.fb ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00390000004211 ENSGT01060000248564.a.a ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000159115.p ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT00940000153314.a.b.a.k ENSGT01090000260070.D ENSGT00940000158228.a Cercopithecinae_d ANCESTRAL SPECIES 35 ENSGT01010000222287.B.b.a.a.b ENSGT00390000012242 ENSGT01010000222360.D.b.o.a.a ENSGT00950000183034.C ENSGT00390000011674 ENSGT00390000010837 ENSGT00390000016036.fb ENSGT00950000182827.E ENSGT00530000063407.a ENSGT00390000011376.e.a ENSGT00940000156096 ENSGT00390000004211 ENSGT00940000156953 ENSGT00970000193421.B.w.a #22 ENSGT00530000063881.a.a ENSGT00940000160519 ENSGT00390000003365 ENSGT00940000158591 ENSGT00940000159115.p ENSGT00940000156864 ENSGT00940000156652 ENSGT00950000183031.A.a.b ENSGT00940000155887 ENSGT00390000002957 ENSGT00550000074802 ENSGT00620000088063 ENSGT00940000153314.a.b.a.k ENSGT01090000260070.D ENSGT00940000158228.a Sooty mangabey MODERN SPECIES 139 HTR1E (ENSCATG00000020218) CGA (ENSCATG00000041749) ENSCATG00000041508 ZNF292 (ENSCATG00000034148) SMIM8 (ENSCATG00000033189) C6orf163 (ENSCATG00000032899) CFAP206 (ENSCATG00000040165) SLC35A1 (ENSCATG00000034961) RARS2 (ENSCATG00000023833) ORC3 (ENSCATG00000043319) AKIRIN2 (ENSCATG00000040852) SPACA1 (ENSCATG00000038646) RNGTT (ENSCATG00000045048) ENSCATG00000044563 #22 PNRC1 (ENSCATG00000042984) SRSF12 (ENSCATG00000030620) PM20D2 (ENSCATG00000028215) GABRR1 (ENSCATG00000044484) ENSCATG00000043258 GABRR2 (ENSCATG00000041117) UBE2J1 (ENSCATG00000039458) RRAGD (ENSCATG00000017528) ANKRD6 (ENSCATG00000034920) LYRM2 (ENSCATG00000038992) MDN1 (ENSCATG00000045011) CASP8AP2 (ENSCATG00000014543) GJA10 (ENSCATG00000005843) BACH2 (ENSCATG00000037186) ENSCATG00000033625 Vervet Monkey MODERN SPECIES 4 CGA (ENSCSAG00000017361) ZNF292 (ENSCSAG00000017359) GJB7 (ENSCSAG00000000195) SMIM8 (ENSCSAG00000017356) C6orf163 (ENSCSAG00000017354) ENSCSAG00000017350 CFAP206 (ENSCSAG00000017348) SLC35A1 (ENSCSAG00000017346) RARS2 (ENSCSAG00000017345) ORC3 (ENSCSAG00000017343) AKIRIN2 (ENSCSAG00000017340) SPACA1 (ENSCSAG00000017335) CNR1 (ENSCSAG00000000194) RNGTT (ENSCSAG00000017333) ENSCSAG00000017330 ENSCSAG00000000193 #22 PNRC1 (ENSCSAG00000017327) SRSF12 (ENSCSAG00000017325) PM20D2 (ENSCSAG00000017322) GABRR1 (ENSCSAG00000017318) GABRR2 (ENSCSAG00000017310) UBE2J1 (ENSCSAG00000017306) RRAGD (ENSCSAG00000017302) ANKRD6 (ENSCSAG00000017299) LYRM2 (ENSCSAG00000017297) ENSCSAG00000017292 ENSCSAG00000017283 ENSCSAG00000017279 CASP8AP2 (ENSCSAG00000017276) GJA10 (ENSCSAG00000000192) BACH2 (ENSCSAG00000017273) Cercopithecinae ANCESTRAL SPECIES ENSGT00970000193421.B.w.b #22 Cercopithecinae_a ANCESTRAL SPECIES ENSGT00970000193421.B.w.b #22 Macaca ANCESTRAL SPECIES ENSGT00970000193421.B.w.b #22 Pig-tailed macaque MODERN SPECIES 548 CMA1 (ENSMNEG00000037233) CTSG (ENSMNEG00000033836) GZMB (ENSMNEG00000030038) STXBP6 (ENSMNEG00000035846) ENSMNEG00000028242 NOVA1 (ENSMNEG00000040302) ENSMNEG00000031451 ENSMNEG00000003788 ENSMNEG00000043357 PRKD1 (ENSMNEG00000015251) G2E3 (ENSMNEG00000033498) SCFD1 (ENSMNEG00000035218) ENSMNEG00000041776 COCH (ENSMNEG00000031522) STRN3 (ENSMNEG00000032023) ENSMNEG00000040344 #22 HECTD1 (ENSMNEG00000001350) #23 HEATR5A (ENSMNEG00000034513) DTD2 (ENSMNEG00000045027) NUBPL (ENSMNEG00000031679) ENSMNEG00000027078 ARHGAP5 (ENSMNEG00000044390) ENSMNEG00000011661 AKAP6 (ENSMNEG00000039858) NPAS3 (ENSMNEG00000034614) ENSMNEG00000019306 EGLN3 (ENSMNEG00000034405) SPTSSA (ENSMNEG00000041970) EAPP (ENSMNEG00000034819) SNX6 (ENSMNEG00000044189) CFL2 (ENSMNEG00000039241) Cercopithecinae ANCESTRAL SPECIES 2 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Cercopithecinae_a ANCESTRAL SPECIES 1 ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00390000011740.o.a.b ENSGT00940000154466.rb.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Macaca ANCESTRAL SPECIES 1 ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00390000011740.o.a.b ENSGT00940000154466.rb.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Macaca_a ANCESTRAL SPECIES 2 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01050000248456 ENSGT00940000155573 ENSGT00940000154466.rb.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b.e ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.a.b.b.b ENSGT00390000001332 ENSGT00940000154940.pb ENSGT00950000183000.c.b Rhesus MODERN SPECIES 17 GZMB (ENSMMUG00000014381) STXBP6 (ENSMMUG00000015442) ENSMMUG00000050036 ENSMMUG00000055618 NOVA1 (ENSMMUG00000004271) FOXG1 (ENSMMUG00000021444) ENSMMUG00000038390 PRKD1 (ENSMMUG00000022550) ENSMMUG00000062130 ENSMMUG00000062346 ENSMMUG00000064617 G2E3 (ENSMMUG00000019691) SCFD1 (ENSMMUG00000019692) COCH (ENSMMUG00000011514) STRN3 (ENSMMUG00000011515) AP4S1 (ENSMMUG00000003123) #22 HECTD1 (ENSMMUG00000003120) #23 HEATR5A (ENSMMUG00000011779) DTD2 (ENSMMUG00000050472) GPR33 (ENSMMUG00000015703) NUBPL (ENSMMUG00000012726) ENSMMUG00000054094 ENSMMUG00000056320 ARHGAP5 (ENSMMUG00000016346) AKAP6 (ENSMMUG00000015128) ENSMMUG00000062990 NPAS3 (ENSMMUG00000014839) ENSMMUG00000054677 EGLN3 (ENSMMUG00000000040) ENSMMUG00000064654 ENSMMUG00000057166 Crab-eating macaque MODERN SPECIES 17 ENSMFAG00000052065 ENSMFAG00000058625 ENSMFAG00000061901 NOVA1 (ENSMFAG00000035425) ENSMFAG00000031652 ENSMFAG00000060602 ENSMFAG00000048178 ENSMFAG00000061081 FOXG1 (ENSMFAG00000000544) ENSMFAG00000033313 PRKD1 (ENSMFAG00000039957) G2E3 (ENSMFAG00000033929) SCFD1 (ENSMFAG00000039675) COCH (ENSMFAG00000043586) STRN3 (ENSMFAG00000030208) ENSMFAG00000032637 #22 HECTD1 (ENSMFAG00000038044) #23 HEATR5A (ENSMFAG00000031414) DTD2 (ENSMFAG00000044459) GPR33 (ENSMFAG00000038012) ENSMFAG00000062632 ENSMFAG00000054026 NUBPL (ENSMFAG00000038751) ARHGAP5 (ENSMFAG00000000350) AKAP6 (ENSMFAG00000040818) ENSMFAG00000000440 NPAS3 (ENSMFAG00000043431) ENSMFAG00000057891 EGLN3 (ENSMFAG00000036942) ENSMFAG00000058983 SPTSSA (ENSMFAG00000048755) Cercopithecinae_b DUPLICATION Cercopithecinae_b DUPLICATION Cercopithecinae_b ANCESTRAL SPECIES ENSGT00970000193421.B.x.a.a #22 Olive baboon MODERN SPECIES 16 ENSPANG00000050985 HTR1E (ENSPANG00000005474) ENSPANG00000039493 ZNF292 (ENSPANG00000007401) ENSPANG00000020538 C6orf163 (ENSPANG00000006405) CFAP206 (ENSPANG00000024964) SLC35A1 (ENSPANG00000011579) RARS2 (ENSPANG00000000663) ORC3 (ENSPANG00000001079) AKIRIN2 (ENSPANG00000020357) ENSPANG00000039569 SPACA1 (ENSPANG00000023127) CNR1 (ENSPANG00000018644) RNGTT (ENSPANG00000010454) ENSPANG00000013953 #22 PM20D2 (ENSPANG00000020356) SRSF12 (ENSPANG00000016731) GABRR1 (ENSPANG00000020411) GABRR2 (ENSPANG00000010453) UBE2J1 (ENSPANG00000016471) RRAGD (ENSPANG00000021498) ANKRD6 (ENSPANG00000017857) LYRM2 (ENSPANG00000024769) MDN1 (ENSPANG00000033473) CASP8AP2 (ENSPANG00000016264) GJA10 (ENSPANG00000011128) BACH2 (ENSPANG00000006817) MAP3K7 (ENSPANG00000021959) ENSPANG00000045484 ENSPANG00000050211 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00970000193421.B.x.a.a #22 Drill MODERN SPECIES 896 CFAP206 (ENSMLEG00000030746) SLC35A1 (ENSMLEG00000038798) RARS2 (ENSMLEG00000036913) ORC3 (ENSMLEG00000031406) AKIRIN2 (ENSMLEG00000042845) SPACA1 (ENSMLEG00000000535) RNGTT (ENSMLEG00000036501) ENSMLEG00000025014 #22 PNRC1 (ENSMLEG00000035351) SRSF12 (ENSMLEG00000042204) PM20D2 (ENSMLEG00000034819) GABRR1 (ENSMLEG00000037111) ENSMLEG00000036657 GABRR2 (ENSMLEG00000035249) UBE2J1 (ENSMLEG00000033818) RRAGD (ENSMLEG00000002405) ANKRD6 (ENSMLEG00000035340) LYRM2 (ENSMLEG00000033284) MDN1 (ENSMLEG00000042713) CASP8AP2 (ENSMLEG00000040162) ENSMLEG00000031189 GJA10 (ENSMLEG00000032578) BACH2 (ENSMLEG00000043165) Cercopithecinae_b ANCESTRAL SPECIES ENSGT00970000193421.B.x.a.b #22 Cercopithecinae_d ANCESTRAL SPECIES ENSGT00970000193421.B.x.a.b #22 Drill MODERN SPECIES 1147 ENSMLEG00000033922 PRKD1 (ENSMLEG00000038538) G2E3 (ENSMLEG00000000130) ENSMLEG00000040005 SCFD1 (ENSMLEG00000040452) COCH (ENSMLEG00000041242) STRN3 (ENSMLEG00000002796) ENSMLEG00000027407 #22 HECTD1 (ENSMLEG00000037269) #23 HEATR5A (ENSMLEG00000021879) DTD2 (ENSMLEG00000000901) Cercopithecinae_b ANCESTRAL SPECIES 8 ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00390000011740.o.a.b ENSGT00940000154466.rb.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x.b #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940.pb Cercopithecinae_d ANCESTRAL SPECIES 101 ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00390000011740.o.a.b ENSGT00940000154466.rb.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B.x.b #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00910000147374 ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Sooty mangabey MODERN SPECIES 186 ENSCATG00000036166 ENSCATG00000016038 FOXG1 (ENSCATG00000017354) ENSCATG00000039455 ENSCATG00000035671 PRKD1 (ENSCATG00000007883) ENSCATG00000022351 G2E3 (ENSCATG00000030515) ENSCATG00000013950 SCFD1 (ENSCATG00000036581) COCH (ENSCATG00000007110) ENSCATG00000029724 STRN3 (ENSCATG00000022375) ENSCATG00000035780 #22 HECTD1 (ENSCATG00000032933) #23 HEATR5A (ENSCATG00000032282) DTD2 (ENSCATG00000031883) NUBPL (ENSCATG00000033880) ENSCATG00000015897 ARHGAP5 (ENSCATG00000035037) ENSCATG00000018768 AKAP6 (ENSCATG00000037210) NPAS3 (ENSCATG00000029945) ENSCATG00000043412 EGLN3 (ENSCATG00000040041) ENSCATG00000030363 SPTSSA (ENSCATG00000029208) EAPP (ENSCATG00000044341) Olive baboon MODERN SPECIES 17 GZMB (ENSPANG00000023854) ENSPANG00000023856 ENSPANG00000040110 ENSPANG00000039253 NOVA1 (ENSPANG00000004891) ENSPANG00000041818 FOXG1 (ENSPANG00000020365) ENSPANG00000020459 ENSPANG00000047513 PRKD1 (ENSPANG00000009943) G2E3 (ENSPANG00000015300) SCFD1 (ENSPANG00000016614) ENSPANG00000038938 COCH (ENSPANG00000011160) STRN3 (ENSPANG00000020458) ENSPANG00000017427 #22 HECTD1 (ENSPANG00000017149) #23 HEATR5A (ENSPANG00000000801) DTD2 (ENSPANG00000021336) GPR33 (ENSPANG00000021666) NUBPL (ENSPANG00000021781) ENSPANG00000047627 ARHGAP5 (ENSPANG00000024272) ENSPANG00000038472 ENSPANG00000038010 AKAP6 (ENSPANG00000022397) NPAS3 (ENSPANG00000021333) EGLN3 (ENSPANG00000047484) ENSPANG00000039055 SPTSSA (ENSPANG00000044993) EAPP (ENSPANG00000018424) Rhinopithecus ANCESTRAL SPECIES 225 ENSGT00940000155573 ENSGT00390000011740.o.a.b ENSGT00940000160678.a ENSGT00390000007452 ENSGT00930000150950.b.m.a ENSGT00950000183024.a.b.a ENSGT00390000014814.a.b.a.b.a.b ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00930000150941.x.b.a ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00910000147163 ENSGT00940000154553.a.b.e ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Black snub-nosed monkey DUPLICATION Black snub-nosed monkey MODERN SPECIES 554 RNGTT (ENSRBIG00000031371) ENSRBIG00000039603 #22 ENSRBIG00000033270 ENSRBIG00000015851 SRSF12 (ENSRBIG00000029756) PM20D2 (ENSRBIG00000028170) GABRR1 (ENSRBIG00000033754) ENSRBIG00000029173 GABRR2 (ENSRBIG00000033560) UBE2J1 (ENSRBIG00000040894) RRAGD (ENSRBIG00000035825) ENSRBIG00000031594 ANKRD6 (ENSRBIG00000040932) LYRM2 (ENSRBIG00000038797) MDN1 (ENSRBIG00000026947) CASP8AP2 (ENSRBIG00000017037) ENSRBIG00000037272 Black snub-nosed monkey MODERN SPECIES 1258 NOVA1 (ENSRBIG00000026331) ENSRBIG00000043316 FOXG1 (ENSRBIG00000023959) ENSRBIG00000031563 ENSRBIG00000023096 PRKD1 (ENSRBIG00000023650) ENSRBIG00000044315 ENSRBIG00000021976 G2E3 (ENSRBIG00000038648) SCFD1 (ENSRBIG00000035795) COCH (ENSRBIG00000024567) STRN3 (ENSRBIG00000034106) ENSRBIG00000031706 #22 HECTD1 (ENSRBIG00000014027) #23 HEATR5A (ENSRBIG00000035494) DTD2 (ENSRBIG00000031412) NUBPL (ENSRBIG00000033232) ENSRBIG00000038307 ARHGAP5 (ENSRBIG00000016020) AKAP6 (ENSRBIG00000038045) ENSRBIG00000032788 NPAS3 (ENSRBIG00000032686) ENSRBIG00000019858 EGLN3 (ENSRBIG00000039961) SPTSSA (ENSRBIG00000039846) EAPP (ENSRBIG00000044230) Golden snub-nosed monkey DUPLICATION Golden snub-nosed monkey MODERN SPECIES 3216 RNGTT (ENSRROG00000030932) ENSRROG00000025341 ENSRROG00000028750 #22 ENSRROG00000037633 ENSRROG00000012648 SRSF12 (ENSRROG00000035967) PM20D2 (ENSRROG00000029139) GABRR1 (ENSRROG00000031005) ENSRROG00000039270 GABRR2 (ENSRROG00000036077) UBE2J1 (ENSRROG00000044687) RRAGD (ENSRROG00000041534) ENSRROG00000027171 ENSRROG00000022559 ANKRD6 (ENSRROG00000043779) LYRM2 (ENSRROG00000005389) MDN1 (ENSRROG00000026180) CASP8AP2 (ENSRROG00000033739) Golden snub-nosed monkey MODERN SPECIES 1802 ENSRROG00000026815 ENSRROG00000040454 ENSRROG00000042434 PRKD1 (ENSRROG00000031270) ENSRROG00000016372 G2E3 (ENSRROG00000040994) ENSRROG00000034261 SCFD1 (ENSRROG00000033120) COCH (ENSRROG00000032576) ENSRROG00000039999 STRN3 (ENSRROG00000044804) ENSRROG00000019504 #22 HECTD1 (ENSRROG00000014728) #23 HEATR5A (ENSRROG00000035401) DTD2 (ENSRROG00000033463) NUBPL (ENSRROG00000045260) ENSRROG00000040570 ENSRROG00000040701 ARHGAP5 (ENSRROG00000043273) Platyrrhini ANCESTRAL SPECIES 4 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT01030000234574.B.c.b.b.h ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00940000167604 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT01030000234542.b.a.a.b.a.b.k.b ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.l ENSGT00940000154940.pb ENSGT00950000183000.c.b Mas night monkey MODERN SPECIES 819 KHNYN (ENSANAG00000023698) SDR39U1 (ENSANAG00000026864) CMA1 (ENSANAG00000028506) CTSG (ENSANAG00000025418) GZMH (ENSANAG00000022041) GZMB (ENSANAG00000032891) STXBP6 (ENSANAG00000025116) ENSANAG00000034584 NOVA1 (ENSANAG00000028004) ENSANAG00000028865 PRKD1 (ENSANAG00000032943) G2E3 (ENSANAG00000024605) SCFD1 (ENSANAG00000025849) COCH (ENSANAG00000029746) STRN3 (ENSANAG00000026168) AP4S1 (ENSANAG00000026444) #22 HECTD1 (ENSANAG00000037367) #23 ENSANAG00000035920 ENSANAG00000033419 DTD2 (ENSANAG00000036862) NUBPL (ENSANAG00000036864) ARHGAP5 (ENSANAG00000037055) AKAP6 (ENSANAG00000034900) ENSANAG00000020942 NPAS3 (ENSANAG00000023028) ENSANAG00000020399 EGLN3 (ENSANAG00000037222) ENSANAG00000024247 ENSANAG00000021068 ENSANAG00000030653 SNX6 (ENSANAG00000019855) Cebidae ANCESTRAL SPECIES 3 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT01030000234542.b.a.a.b.a.b.k.b ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.l ENSGT00940000154940.pb ENSGT00950000183000.c.b Cebidae_a ANCESTRAL SPECIES 4 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00390000007452 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT01030000234542.b.a.a.b.a.b.k.b ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.k.a ENSGT00940000154940.pb ENSGT00950000183000.c.b ENSGT00940000158135 Capuchin MODERN SPECIES 104 NOVA1 (ENSCCAG00000026410) FOXG1 (ENSCCAG00000020029) ENSCCAG00000027095 PRKD1 (ENSCCAG00000035438) G2E3 (ENSCCAG00000035971) SCFD1 (ENSCCAG00000032443) COCH (ENSCCAG00000024866) STRN3 (ENSCCAG00000011456) AP4S1 (ENSCCAG00000021787) #22 HECTD1 (ENSCCAG00000012275) #23 HEATR5A (ENSCCAG00000031936) CASP7 (ENSCCAG00000022261) PLEKHS1 (ENSCCAG00000035291) ENSCCAG00000028782 NHLRC2 (ENSCCAG00000025322) CCDC186 (ENSCCAG00000023942) TDRD1 (ENSCCAG00000027375) Bolivian squirrel monkey MODERN SPECIES 52 CTSG (ENSSBOG00000030717) ENSSBOG00000019753 GZMH (ENSSBOG00000026395) GZMB (ENSSBOG00000016642) STXBP6 (ENSSBOG00000022536) ENSSBOG00000033503 NOVA1 (ENSSBOG00000034029) ENSSBOG00000029497 ENSSBOG00000009503 ENSSBOG00000034922 PRKD1 (ENSSBOG00000035413) G2E3 (ENSSBOG00000028363) SCFD1 (ENSSBOG00000031363) COCH (ENSSBOG00000011793) STRN3 (ENSSBOG00000023010) AP4S1 (ENSSBOG00000026649) #22 HECTD1 (ENSSBOG00000026436) #23 ENSSBOG00000033123 HEATR5A (ENSSBOG00000032305) DTD2 (ENSSBOG00000027444) NUBPL (ENSSBOG00000033649) ARHGAP5 (ENSSBOG00000025460) AKAP6 (ENSSBOG00000021858) NPAS3 (ENSSBOG00000021474) EGLN3 (ENSSBOG00000032045) ENSSBOG00000035596 SPTSSA (ENSSBOG00000035589) ENSSBOG00000033003 SNX6 (ENSSBOG00000022890) CFL2 (ENSSBOG00000014011) BAZ1A (ENSSBOG00000028821) Marmoset MODERN SPECIES 1 CMA1 (ENSCJAG00000006344) CTSG (ENSCJAG00000006323) GZMH (ENSCJAG00000006314) GZMB (ENSCJAG00000006291) STXBP6 (ENSCJAG00000045104) ENSCJAG00000069808 NOVA1 (ENSCJAG00000039497) ENSCJAG00000022035 FOXG1 (ENSCJAG00000006213) PRKD1 (ENSCJAG00000006180) G2E3 (ENSCJAG00000006106) SCFD1 (ENSCJAG00000005938) COCH (ENSCJAG00000005886) STRN3 (ENSCJAG00000005822) ENSCJAG00000071091 AP4S1 (ENSCJAG00000005786) #22 HECTD1 (ENSCJAG00000005631) #23 ENSCJAG00000073672 HEATR5A (ENSCJAG00000005593) ENSCJAG00000075200 DTD2 (ENSCJAG00000073851) GPR33 (ENSCJAG00000035428) NUBPL (ENSCJAG00000005582) ARHGAP5 (ENSCJAG00000005538) AKAP6 (ENSCJAG00000005474) NPAS3 (ENSCJAG00000047425) EGLN3 (ENSCJAG00000005424) SPTSSA (ENSCJAG00000086959) ENSCJAG00000032302 EAPP (ENSCJAG00000042239) SNX6 (ENSCJAG00000044761) Strepsirrhini ANCESTRAL SPECIES 2 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.a ENSGT01030000234551.k.d.b.a.a.a.b.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Bushbaby MODERN SPECIES 167 STXBP6 (ENSOGAG00000011211) NOVA1 (ENSOGAG00000025938) FOXG1 (ENSOGAG00000029149) PRKD1 (ENSOGAG00000002966) G2E3 (ENSOGAG00000017094) SCFD1 (ENSOGAG00000017096) COCH (ENSOGAG00000004695) STRN3 (ENSOGAG00000004698) AP4S1 (ENSOGAG00000004703) #22 HEATR5A (ENSOGAG00000013052) DTD2 (ENSOGAG00000013060) NUBPL (ENSOGAG00000011550) ARHGAP5 (ENSOGAG00000029734) AKAP6 (ENSOGAG00000001808) NPAS3 (ENSOGAG00000014886) EGLN3 (ENSOGAG00000014893) ENSOGAG00000001254 SPTSSA (ENSOGAG00000030285) EAPP (ENSOGAG00000012492) SNX6 (ENSOGAG00000008020) CFL2 (ENSOGAG00000032321) BAZ1A (ENSOGAG00000002234) ENSOGAG00000031729 SRP54 (ENSOGAG00000012188) Lemuriformes ANCESTRAL SPECIES 8 ENSGT00940000161993 ENSGT00390000000337 ENSGT01030000234551.k.d.b.b.c.a ENSGT01030000234551.k.d.b.b.c.b ENSGT01030000234551.k.d.b.a.a.b ENSGT01030000234551.k.d.b.a.a.a.b.b.b.l ENSGT01030000234551.k.d.b.a.a.a.b.b.b.k ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Mouse lemur MODERN SPECIES 22 CMA1 (ENSMICG00000014279) ENSMICG00000045482 CTSG (ENSMICG00000030692) MYH6 (ENSMICG00000045811) DHRS2 (ENSMICG00000044785) ENSMICG00000010090 ENSMICG00000027192 ENSMICG00000017194 STXBP6 (ENSMICG00000035834) NOVA1 (ENSMICG00000034677) PRKD1 (ENSMICG00000001016) G2E3 (ENSMICG00000014597) SCFD1 (ENSMICG00000004149) COCH (ENSMICG00000003344) STRN3 (ENSMICG00000026845) AP4S1 (ENSMICG00000003359) #22 HECTD1 (ENSMICG00000034057) #23 HEATR5A (ENSMICG00000007619) DTD2 (ENSMICG00000030584) ENSMICG00000027167 NUBPL (ENSMICG00000034340) ARHGAP5 (ENSMICG00000007275) AKAP6 (ENSMICG00000027865) NPAS3 (ENSMICG00000031841) EGLN3 (ENSMICG00000000618) ENSMICG00000047011 ENSMICG00000032213 SPTSSA (ENSMICG00000046623) EAPP (ENSMICG00000044807) KTN1 (ENSMICG00000032329) TBPL2 (ENSMICG00000000943) Lemuriformes_a ANCESTRAL SPECIES 194 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Coquerels sifaka MODERN SPECIES 389 ENSPCOG00000016209 PRKD1 (ENSPCOG00000006865) G2E3 (ENSPCOG00000015511) SCFD1 (ENSPCOG00000025558) ENSPCOG00000012773 COCH (ENSPCOG00000023301) STRN3 (ENSPCOG00000001434) AP4S1 (ENSPCOG00000016646) #22 ENSPCOG00000028456 HECTD1 (ENSPCOG00000020200) #23 HEATR5A (ENSPCOG00000022777) DTD2 (ENSPCOG00000017568) NUBPL (ENSPCOG00000022890) ENSPCOG00000015979 ARHGAP5 (ENSPCOG00000024862) AKAP6 (ENSPCOG00000013700) NPAS3 (ENSPCOG00000020941) ENSPCOG00000015194 SPTSSA (ENSPCOG00000027257) EAPP (ENSPCOG00000021389) Greater bamboo lemur MODERN SPECIES 36 ENSPSMG00000006107 PRKD1 (ENSPSMG00000006073) G2E3 (ENSPSMG00000005984) SCFD1 (ENSPSMG00000005912) COCH (ENSPSMG00000005691) STRN3 (ENSPSMG00000005578) AP4S1 (ENSPSMG00000005555) #22 HECTD1 (ENSPSMG00000005480) #23 HEATR5A (ENSPSMG00000005428) DTD2 (ENSPSMG00000005383) GPR33 (ENSPSMG00000005379) NUBPL (ENSPSMG00000005363) ARHGAP5 (ENSPSMG00000005335) Atlantogenata ANCESTRAL SPECIES 8 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Afrotheria ANCESTRAL SPECIES 6 ENSGT01030000234551.k.d.b.a.a.a.b.a.s ENSGT01030000234551.k.d.b.a.a.a.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Tenrec MODERN SPECIES 8059 STRN3 (ENSETEG00000003611) ENSETEG00000003619 #22 Afrotheria_a ANCESTRAL SPECIES 6 ENSGT01030000234551.k.d.b.a.a.a.b.a.s ENSGT01030000234551.k.d.b.a.a.a.a ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Elephant MODERN SPECIES 602 ENSLAFG00000028351 ENSLAFG00000027613 STXBP6 (ENSLAFG00000010204) NOVA1 (ENSLAFG00000006455) ENSLAFG00000000378 PRKD1 (ENSLAFG00000015456) G2E3 (ENSLAFG00000005684) SCFD1 (ENSLAFG00000006117) COCH (ENSLAFG00000012342) STRN3 (ENSLAFG00000012349) AP4S1 (ENSLAFG00000005485) #22 HECTD1 (ENSLAFG00000005491) #23 HEATR5A (ENSLAFG00000001023) DTD2 (ENSLAFG00000018559) GPR33 (ENSLAFG00000031980) NUBPL (ENSLAFG00000004185) ARHGAP5 (ENSLAFG00000012386) AKAP6 (ENSLAFG00000000717) NPAS3 (ENSLAFG00000007169) EGLN3 (ENSLAFG00000007342) SPTSSA (ENSLAFG00000030948) EAPP (ENSLAFG00000010570) SNX6 (ENSLAFG00000010573) CFL2 (ENSLAFG00000010579) BAZ1A (ENSLAFG00000010581) ENSLAFG00000025618 Hyrax MODERN SPECIES 6799 STRN3 (ENSPCAG00000008359) AP4S1 (ENSPCAG00000008456) #22 HECTD1 (ENSPCAG00000008519) #23 Xenarthra ANCESTRAL SPECIES ENSGT00970000193421.B #22 Armadillo MODERN SPECIES 2364 ENSDNOG00000036802 TMPRSS11F (ENSDNOG00000017203) ENSDNOG00000046486 TMPRSS11A (ENSDNOG00000024478) TMPRSS11D (ENSDNOG00000016095) ENSDNOG00000045741 GNRHR (ENSDNOG00000016451) UBA6 (ENSDNOG00000008434) STAP1 (ENSDNOG00000048912) CENPC (ENSDNOG00000002935) ENSDNOG00000044365 #22 ENSDNOG00000042413 ENSDNOG00000001439 ENSDNOG00000040187 Sloth MODERN SPECIES 286 AP4S1 (ENSCHOG00000013301) #22 Marsupialia ANCESTRAL SPECIES ENSGT00390000005052 ENSGT00390000001830.i.a ENSGT00710000106769 ENSGT00940000158774 ENSGT00390000009196 ENSGT00390000008198 ENSGT01030000234551.k.d.b.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000019406 ENSGT00510000047812 ENSGT00940000157545 ENSGT00390000009277 ENSGT00940000160700 ENSGT00390000011613 Opossum MODERN SPECIES ENSMODG00000038001 NOVA1 (ENSMODG00000049692) ENSMODG00000048709 FOXG1 (ENSMODG00000017542) ENSMODG00000043570 ENSMODG00000045515 ENSMODG00000029330 PRKD1 (ENSMODG00000017552) ENSMODG00000028551 G2E3 (ENSMODG00000017557) SCFD1 (ENSMODG00000017563) COCH (ENSMODG00000017567) ENSMODG00000017575 STRN3 (ENSMODG00000017571) ENSMODG00000048426 AP4S1 (ENSMODG00000017579) #22 HECTD1 (ENSMODG00000017590) #23 HEATR5A (ENSMODG00000017600) DTD2 (ENSMODG00000045920) GPR33 (ENSMODG00000050260) ENSMODG00000024099 NUBPL (ENSMODG00000024100) ARHGAP5 (ENSMODG00000017613) AKAP6 (ENSMODG00000017618) NPAS3 (ENSMODG00000017620) ENSMODG00000042896 EGLN3 (ENSMODG00000017625) SQOR (ENSMODG00000017627) BLOC1S6 (ENSMODG00000017628) SLC30A4 (ENSMODG00000017630) ENSMODG00000042102 Marsupialia_b ANCESTRAL SPECIES ENSGT00910000144260 ENSGT00390000005052 ENSGT00390000001830.i.a ENSGT00710000106769 ENSGT00940000158774 ENSGT00390000009196 ENSGT00390000008198 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000182945.b.b.e.b ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000019406 ENSGT00510000047812 ENSGT00940000157545 ENSGT00390000009277 ENSGT00940000160700 Tasmanian devil MODERN SPECIES 1 ENSSHAG00000003512 ENSSHAG00000003236 ENSSHAG00000029021 ENSSHAG00000004157 ENSSHAG00000002433 ENSSHAG00000030234 ENSSHAG00000005592 NOVA1 (ENSSHAG00000031756) FOXG1 (ENSSHAG00000021849) PRKD1 (ENSSHAG00000024235) G2E3 (ENSSHAG00000031633) SCFD1 (ENSSHAG00000014800) ENSSHAG00000026243 COCH (ENSSHAG00000014060) STRN3 (ENSSHAG00000013827) AP4S1 (ENSSHAG00000013484) #22 HECTD1 (ENSSHAG00000013045) #23 HEATR5A (ENSSHAG00000011970) DTD2 (ENSSHAG00000024859) GPR33 (ENSSHAG00000011325) ENSSHAG00000028480 NUBPL (ENSSHAG00000008500) ARHGAP5 (ENSSHAG00000001822) AKAP6 (ENSSHAG00000013667) NPAS3 (ENSSHAG00000025296) ENSSHAG00000012920 ENSSHAG00000008981 SLC30A4 (ENSSHAG00000025011) C15orf48 (ENSSHAG00000006212) SPATA5L1 (ENSSHAG00000005783) GATM (ENSSHAG00000004129) Diprotodontia ANCESTRAL SPECIES ENSGT00910000144260 ENSGT00390000005052 ENSGT00390000001830.i.a ENSGT00710000106769 ENSGT00940000158774 ENSGT00390000009196 ENSGT00390000008198 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000182945.b.b.e.b ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000019406 ENSGT00510000047812 ENSGT00940000157545 ENSGT00390000009277 ENSGT00940000160700 Diprotodontia_a ANCESTRAL SPECIES 1 ENSGT00910000144260 ENSGT00390000005052 ENSGT00390000001830.i.a ENSGT00710000106769 ENSGT00940000158774 ENSGT00390000009196 ENSGT00390000008198 ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT01020000230438.B.b.b.a ENSGT00950000182945.b.b.e.b ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000019406 ENSGT00510000047812 ENSGT00940000157545 ENSGT00390000009277.bb ENSGT00940000160700 koala MODERN SPECIES 101 TRIP11 (ENSPCIG00000011383) FBLN5 (ENSPCIG00000011365) TC2N (ENSPCIG00000011360) ENSPCIG00000011356 ENSPCIG00000011351 STXBP6 (ENSPCIG00000011348) NOVA1 (ENSPCIG00000024683) ENSPCIG00000016114 ENSPCIG00000035834 ENSPCIG00000035249 PRKD1 (ENSPCIG00000024460) G2E3 (ENSPCIG00000025422) SCFD1 (ENSPCIG00000025457) COCH (ENSPCIG00000023777) STRN3 (ENSPCIG00000023770) AP4S1 (ENSPCIG00000035487) #22 ENSPCIG00000023758 HECTD1 (ENSPCIG00000023741) #23 HEATR5A (ENSPCIG00000023713) DTD2 (ENSPCIG00000023706) GPR33 (ENSPCIG00000023701) ENSPCIG00000024335 NUBPL (ENSPCIG00000024329) ARHGAP5 (ENSPCIG00000024338) ENSPCIG00000018432 Common wonbat MODERN SPECIES 1031 ATXN3 (ENSVURG00010000231) TRIP11 (ENSVURG00010000541) ENSVURG00010000613 TC2N (ENSVURG00010000637) ENSVURG00010000663 ENSVURG00010000690 ENSVURG00010000770 NOVA1 (ENSVURG00010000843) ENSVURG00010000899 PRKD1 (ENSVURG00010000998) G2E3 (ENSVURG00010001188) ENSVURG00010001211 SCFD1 (ENSVURG00010001249) COCH (ENSVURG00010001363) STRN3 (ENSVURG00010001455) AP4S1 (ENSVURG00010001627) #22 HECTD1 (ENSVURG00010001700) #23 HEATR5A (ENSVURG00010001756) DTD2 (ENSVURG00010001842) GPR33 (ENSVURG00010001847) NUBPL (ENSVURG00010001936) ENSVURG00010002007 ARHGAP5 (ENSVURG00010002087) AKAP6 (ENSVURG00010002193) NPAS3 (ENSVURG00010002315) EGLN3 (ENSVURG00010002628) ENSVURG00010002650 SQOR (ENSVURG00010002691) BLOC1S6 (ENSVURG00010002717) SLC30A4 (ENSVURG00010002727) ENSVURG00010002749 Platypus MODERN SPECIES 5 FBXO33 (ENSOANG00000049571) ENSOANG00000014010 ENSOANG00000039934 PNN (ENSOANG00000046087) TRAPPC6B (ENSOANG00000043135) GEMIN2 (ENSOANG00000014013) SEC23A (ENSOANG00000014007) STXBP6 (ENSOANG00000014014) NOVA1 (ENSOANG00000014015) FOXG1 (ENSOANG00000014017) PRKD1 (ENSOANG00000014018) G2E3 (ENSOANG00000014019) SCFD1 (ENSOANG00000014020) COCH (ENSOANG00000014025) STRN3 (ENSOANG00000014029) AP4S1 (ENSOANG00000039192) #22 HECTD1 (ENSOANG00000014033) #23 HEATR5A (ENSOANG00000014036) DTD2 (ENSOANG00000014038) NUBPL (ENSOANG00000014034) ARHGAP5 (ENSOANG00000014039) AKAP6 (ENSOANG00000014040) NPAS3 (ENSOANG00000014044) ENSOANG00000049968 EGLN3 (ENSOANG00000037294) SPTSSA (ENSOANG00000043145) EAPP (ENSOANG00000049496) SNX6 (ENSOANG00000042198) BAZ1A (ENSOANG00000014049) ENSOANG00000014050 SRP54 (ENSOANG00000041370) Sauria ANCESTRAL SPECIES 3 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Lepidosauria ANCESTRAL SPECIES 24 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 tuatara MODERN SPECIES 500 G2E3 (ENSSPUG00000008536) SCFD1 (ENSSPUG00000008515) COCH (ENSSPUG00000008496) STRN3 (ENSSPUG00000008477) AP4S1 (ENSSPUG00000008466) #22 HECTD1 (ENSSPUG00000008399) #23 Episquamata ANCESTRAL SPECIES ENSGT00940000159180 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT01100000263530.b ENSGT01100000263530.a ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Laterata ANCESTRAL SPECIES 2 ENSGT00940000159180 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT01100000263530.b ENSGT01100000263530.a ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Common wall lizard MODERN SPECIES ACTC1 (ENSPMRG00000008444) ENSPMRG00000008441 ENSPMRG00000008440 STXBP6 (ENSPMRG00000008434) ENSPMRG00000008423 ENSPMRG00000008417 NOVA1 (ENSPMRG00000008406) ENSPMRG00000008394 ENSPMRG00000008392 FOXG1 (ENSPMRG00000008381) PRKD1 (ENSPMRG00000007587) G2E3 (ENSPMRG00000007283) SCFD1 (ENSPMRG00000007064) COCH (ENSPMRG00000006936) STRN3 (ENSPMRG00000006295) AP4S1 (ENSPMRG00000006218) #22 ENSPMRG00000006213 HECTD1 (ENSPMRG00000005579) #23 HEATR5A (ENSPMRG00000004459) DTD2 (ENSPMRG00000004359) NUBPL (ENSPMRG00000004333) ENSPMRG00000004327 ENSPMRG00000004319 AKAP6 (ENSPMRG00000004291) ENSPMRG00000004283 ENSPMRG00000004277 ENSPMRG00000004271 ENSPMRG00000004269 NPAS3 (ENSPMRG00000004200) ENSPMRG00000004181 EGLN3 (ENSPMRG00000004171) Argentine black and white tegu MODERN SPECIES 14 AQR (ENSSMRG00000014721) ENSSMRG00000014720 ENSSMRG00000014719 ENSSMRG00000014716 STXBP6 (ENSSMRG00000014714) ENSSMRG00000014713 NOVA1 (ENSSMRG00000014710) ENSSMRG00000014709 ENSSMRG00000014708 FOXG1 (ENSSMRG00000014705) PRKD1 (ENSSMRG00000014697) G2E3 (ENSSMRG00000014687) SCFD1 (ENSSMRG00000014682) COCH (ENSSMRG00000014678) STRN3 (ENSSMRG00000014675) AP4S1 (ENSSMRG00000014674) #22 HECTD1 (ENSSMRG00000012971) #23 HEATR5A (ENSSMRG00000012967) ENSSMRG00000012966 NUBPL (ENSSMRG00000012965) ARHGAP5 (ENSSMRG00000012963) AKAP6 (ENSSMRG00000012959) ENSSMRG00000012958 NPAS3 (ENSSMRG00000012956) EGLN3 (ENSSMRG00000012949) SPTSSA (ENSSMRG00000012947) CFL2 (ENSSMRG00000012946) SNX6 (ENSSMRG00000012944) EAPP (ENSSMRG00000012943) BAZ1A (ENSSMRG00000012801) ENSSMRG00000012800 Toxicofera ANCESTRAL SPECIES 5 ENSGT00940000159180 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.r.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000162286.a.a ENSGT01100000263481 ENSGT01100000263530.b ENSGT01100000263530.a ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 Lizard MODERN SPECIES 1 ENSACAG00000039290 ENSACAG00000017412 SLC46A2 (ENSACAG00000017402) SNX30 (ENSACAG00000017384) ENSACAG00000034721 INIP (ENSACAG00000034986) KIAA1958 (ENSACAG00000017372) HSDL2 (ENSACAG00000017353) PTBP3 (ENSACAG00000017316) SUSD1 (ENSACAG00000022560) UGCG (ENSACAG00000017299) ENSACAG00000014828 COCH (ENSACAG00000014832) ENSACAG00000034657 STRN3 (ENSACAG00000014886) AP4S1 (ENSACAG00000015092) #22 HECTD1 (ENSACAG00000015118) #23 HEATR5A (ENSACAG00000015177) DTD2 (ENSACAG00000015281) NUBPL (ENSACAG00000015286) ENSACAG00000029681 ARHGAP5 (ENSACAG00000002726) ENSACAG00000044565 AKAP6 (ENSACAG00000002643) ENSACAG00000036757 NPAS3 (ENSACAG00000002620) EGLN3 (ENSACAG00000040138) SPTSSA (ENSACAG00000044505) EAPP (ENSACAG00000040323) SNX6 (ENSACAG00000002409) CFL2 (ENSACAG00000002385) Elapidae ANCESTRAL SPECIES 3 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.r.a ENSGT00940000173025 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a.g ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b.m ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Indian cobra MODERN SPECIES DPH6 (ENSNNAG00000009840) AQR (ENSNNAG00000009928) ACTC1 (ENSNNAG00000010057) ENSNNAG00000010139 STXBP6 (ENSNNAG00000010185) ENSNNAG00000010219 NOVA1 (ENSNNAG00000010237) ENSNNAG00000010297 FOXG1 (ENSNNAG00000010333) PRKD1 (ENSNNAG00000010348) G2E3 (ENSNNAG00000010420) SCFD1 (ENSNNAG00000010584) COCH (ENSNNAG00000011926) ENSNNAG00000012061 ENSNNAG00000012651 AP4S1 (ENSNNAG00000013772) #22 HECTD1 (ENSNNAG00000013803) #23 HEATR5A (ENSNNAG00000013880) DTD2 (ENSNNAG00000013978) NUBPL (ENSNNAG00000006706) ARHGAP5 (ENSNNAG00000006737) AKAP6 (ENSNNAG00000006787) NPAS3 (ENSNNAG00000006932) ENSNNAG00000007211 SPTSSA (ENSNNAG00000007223) EAPP (ENSNNAG00000007231) SNX6 (ENSNNAG00000007261) CFL2 (ENSNNAG00000007288) BAZ1A (ENSNNAG00000007312) ENSNNAG00000007422 SRP54 (ENSNNAG00000007461) Elapidae_a ANCESTRAL SPECIES 4 ENSGT00390000018465 ENSGT00420000029820 ENSGT00990000214196 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.r.a ENSGT00940000173025 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a.g ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b.m ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Blue-lipped sea krait MODERN SPECIES 6949 AMD1 (ENSLLTG00000012915) GTF3C6 (ENSLLTG00000012921) ENSLLTG00000012931 AP4S1 (ENSLLTG00000012946) #22 Acanthophiinae ANCESTRAL SPECIES 6 ENSGT00390000018465 ENSGT00420000029820 ENSGT00990000214196 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.r.a ENSGT00940000173025 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a.g ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b.m ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Mainland tiger snake MODERN SPECIES 8 ENSNSUG00000006077 DPH6 (ENSNSUG00000006076) ENSNSUG00000006075 AQR (ENSNSUG00000005708) ACTC1 (ENSNSUG00000005705) ENSNSUG00000005703 STXBP6 (ENSNSUG00000005702) NOVA1 (ENSNSUG00000005700) FOXG1 (ENSNSUG00000005697) PRKD1 (ENSNSUG00000005692) G2E3 (ENSNSUG00000005637) SCFD1 (ENSNSUG00000004783) COCH (ENSNSUG00000004777) ENSNSUG00000004776 ENSNSUG00000004774 AP4S1 (ENSNSUG00000004769) #22 HECTD1 (ENSNSUG00000003900) #23 HEATR5A (ENSNSUG00000003845) DTD2 (ENSNSUG00000003844) ENSNSUG00000003841 NUBPL (ENSNSUG00000003840) ARHGAP5 (ENSNSUG00000003836) AKAP6 (ENSNSUG00000003783) NPAS3 (ENSNSUG00000003732) EGLN3 (ENSNSUG00000003728) SPTSSA (ENSNSUG00000003726) EAPP (ENSNSUG00000003724) SNX6 (ENSNSUG00000003722) CFL2 (ENSNSUG00000003720) BAZ1A (ENSNSUG00000003669) ENSNSUG00000003653 Eastern brown snake MODERN SPECIES 1 DPH6 (ENSPTXG00000002805) ENSPTXG00000002806 AQR (ENSPTXG00000002808) ACTC1 (ENSPTXG00000002809) ENSPTXG00000002811 STXBP6 (ENSPTXG00000002812) ENSPTXG00000002813 ENSPTXG00000002814 ENSPTXG00000002817 FOXG1 (ENSPTXG00000002818) PRKD1 (ENSPTXG00000002821) G2E3 (ENSPTXG00000002827) SCFD1 (ENSPTXG00000003002) COCH (ENSPTXG00000003006) STRN3 (ENSPTXG00000003009) AP4S1 (ENSPTXG00000003015) #22 HECTD1 (ENSPTXG00000003020) #23 HEATR5A (ENSPTXG00000003041) DTD2 (ENSPTXG00000003115) ENSPTXG00000003117 NUBPL (ENSPTXG00000003118) ARHGAP5 (ENSPTXG00000003120) AKAP6 (ENSPTXG00000003121) NPAS3 (ENSPTXG00000003122) EGLN3 (ENSPTXG00000003125) SPTSSA (ENSPTXG00000003126) EAPP (ENSPTXG00000003127) SNX6 (ENSPTXG00000003129) CFL2 (ENSPTXG00000003130) BAZ1A (ENSPTXG00000003134) ENSPTXG00000003164 Archelosauria ANCESTRAL SPECIES 2 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Archosauria ANCESTRAL SPECIES 5 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Aves ANCESTRAL SPECIES 2 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b African ostrich MODERN SPECIES 438 FOXG1 (ENSSCUG00000010141) PRKD1 (ENSSCUG00000010145) G2E3 (ENSSCUG00000010146) SCFD1 (ENSSCUG00000010147) COCH (ENSSCUG00000010148) STRN3 (ENSSCUG00000010158) AP4S1 (ENSSCUG00000010186) #22 HECTD1 (ENSSCUG00000010193) #23 HEATR5A (ENSSCUG00000010240) NUBPL (ENSSCUG00000010286) ARHGAP5 (ENSSCUG00000010290) AKAP6 (ENSSCUG00000010292) NPAS3 (ENSSCUG00000010293) ENSSCUG00000010294 EGLN3 (ENSSCUG00000010295) EAPP (ENSSCUG00000010297) SNX6 (ENSSCUG00000010298) CFL2 (ENSSCUG00000010299) BAZ1A (ENSSCUG00000010301) SOX3 (ENSSCUG00000010308) ENSSCUG00000010311 GABRA3 (ENSSCUG00000010312) Neognathae ANCESTRAL SPECIES 4 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Galloanserae ANCESTRAL SPECIES 4 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00960000192415 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Phasianidae ANCESTRAL SPECIES 4 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00960000192415 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Japanese quail MODERN SPECIES 23 SRP54 (ENSCJPG00005017701) ENSCJPG00005017700 BAZ1A (ENSCJPG00005017586) CFL2 (ENSCJPG00005017583) SNX6 (ENSCJPG00005017581) EAPP (ENSCJPG00005017580) SPTSSA (ENSCJPG00005017579) EGLN3 (ENSCJPG00005017575) NPAS3 (ENSCJPG00005017573) FOXG1 (ENSCJPG00005017565) PRKD1 (ENSCJPG00005017560) G2E3 (ENSCJPG00005017559) SCFD1 (ENSCJPG00005017558) COCH (ENSCJPG00005017557) STRN3 (ENSCJPG00005017556) AP4S1 (ENSCJPG00005017555) #22 HECTD1 (ENSCJPG00005017554) #23 HEATR5A (ENSCJPG00005017553) DTD2 (ENSCJPG00005017552) NUBPL (ENSCJPG00005017551) ARHGAP5 (ENSCJPG00005017550) AKAP6 (ENSCJPG00005017548) NOVA1 (ENSCJPG00005017546) STXBP6 (ENSCJPG00005017540) ENSCJPG00005017537 ACTC1 (ENSCJPG00005017536) AQR (ENSCJPG00005017534) ZNF770 (ENSCJPG00005017533) DPH6 (ENSCJPG00005017531) CDIN1 (ENSCJPG00005017526) ENSCJPG00005017524 Phasianidae_b ANCESTRAL SPECIES 3 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00960000192415 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b Turkey MODERN SPECIES 25 ENSMGAG00000012079 ENSMGAG00000015818 ENSMGAG00000015347 KATNBL1 (ENSMGAG00000012067) ENSMGAG00000012054 ENSMGAG00000012047 ENSMGAG00000012050 SRP14 (ENSMGAG00000012029) ENSMGAG00000012028 FOXG1 (ENSMGAG00000021764) PRKD1 (ENSMGAG00000011631) G2E3 (ENSMGAG00000012370) SCFD1 (ENSMGAG00000012377) COCH (ENSMGAG00000012391) STRN3 (ENSMGAG00000012362) AP4S1 (ENSMGAG00000012406) #22 HECTD1 (ENSMGAG00000012408) #23 HEATR5A (ENSMGAG00000012421) DTD2 (ENSMGAG00000012433) ENSMGAG00000017755 NUBPL (ENSMGAG00000019955) ARHGAP5 (ENSMGAG00000012438) AKAP6 (ENSMGAG00000017059) ENSMGAG00000016559 NPAS3 (ENSMGAG00000012451) EGLN3 (ENSMGAG00000012453) EAPP (ENSMGAG00000012459) SNX6 (ENSMGAG00000017417) CFL2 (ENSMGAG00000012456) BAZ1A (ENSMGAG00000012463) ENSMGAG00000012478 Chicken MODERN SPECIES 34 DPH6 (ENSGALG00010005407) ZNF770 (ENSGALG00010005428) AQR (ENSGALG00010005436) ACTC1 (ENSGALG00010005444) GJD2 (ENSGALG00010005967) STXBP6 (ENSGALG00010004416) ENSGALG00010004429 ENSGALG00010004436 NOVA1 (ENSGALG00010007328) FOXG1 (ENSGALG00010006854) PRKD1 (ENSGALG00010005458) G2E3 (ENSGALG00010005489) SCFD1 (ENSGALG00010005502) COCH (ENSGALG00010005509) STRN3 (ENSGALG00010005526) AP4S1 (ENSGALG00010005535) #22 HECTD1 (ENSGALG00010005562) #23 HEATR5A (ENSGALG00010005578) DTD2 (ENSGALG00010005617) NUBPL (ENSGALG00010005696) ARHGAP5 (ENSGALG00010005714) AKAP6 (ENSGALG00010005763) NPAS3 (ENSGALG00010005829) ENSGALG00010005864 EGLN3 (ENSGALG00010005871) SPTSSA (ENSGALG00010005900) EAPP (ENSGALG00010005902) SNX32 (ENSGALG00010005890) CFL2 (ENSGALG00010006653) BAZ1A (ENSGALG00010006673) ENSGALG00010006685 Anatidae ANCESTRAL SPECIES 26 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000155653.b ENSGT00390000001545 ENSGT00950000182839.B.b Pink-footed goose MODERN SPECIES 31 ENSABRG00000011727 CDIN1 (ENSABRG00000011734) DPH6 (ENSABRG00000011747) ZNF770 (ENSABRG00000011770) AQR (ENSABRG00000011774) ACTC1 (ENSABRG00000011806) ENSABRG00000011908 STXBP6 (ENSABRG00000011917) NOVA1 (ENSABRG00000011921) FOXG1 (ENSABRG00000011946) PRKD1 (ENSABRG00000011989) G2E3 (ENSABRG00000012051) SCFD1 (ENSABRG00000012162) COCH (ENSABRG00000012468) STRN3 (ENSABRG00000012535) AP4S1 (ENSABRG00000013147) #22 HECTD1 (ENSABRG00000013176) #23 HEATR5A (ENSABRG00000013782) DTD2 (ENSABRG00000013834) NUBPL (ENSABRG00000013842) ARHGAP5 (ENSABRG00000013863) AKAP6 (ENSABRG00000013882) NPAS3 (ENSABRG00000013913) EGLN3 (ENSABRG00000013942) SPTSSA (ENSABRG00000013952) EAPP (ENSABRG00000013967) SNX6 (ENSABRG00000013972) CFL2 (ENSABRG00000013987) HRAS (ENSABRG00000014008) LRRC56 (ENSABRG00000014013) RASSF7 (ENSABRG00000014022) Duck MODERN SPECIES 23 CDIN1 (ENSAPLG00000007516) ENSAPLG00000007825 AQR (ENSAPLG00000008144) ACTC1 (ENSAPLG00000009291) ENSAPLG00000009429 STXBP6 (ENSAPLG00000006792) ENSAPLG00000019466 NOVA1 (ENSAPLG00000008154) ENSAPLG00000017372 FOXG1 (ENSAPLG00000027732) PRKD1 (ENSAPLG00000014715) G2E3 (ENSAPLG00000015236) SCFD1 (ENSAPLG00000015536) COCH (ENSAPLG00000015813) STRN3 (ENSAPLG00000016038) AP4S1 (ENSAPLG00000001781) #22 HECTD1 (ENSAPLG00000002424) #23 HEATR5A (ENSAPLG00000003094) DTD2 (ENSAPLG00000003883) NUBPL (ENSAPLG00000015416) ARHGAP5 (ENSAPLG00000015365) AKAP6 (ENSAPLG00000015214) NPAS3 (ENSAPLG00000015085) EGLN3 (ENSAPLG00000020625) EAPP (ENSAPLG00000021600) SNX6 (ENSAPLG00000011961) CFL2 (ENSAPLG00000025574) HRAS (ENSAPLG00000012248) ENSAPLG00000012427 ENSAPLG00000025316 IRF7 (ENSAPLG00000012752) Neognathae_b ANCESTRAL SPECIES 6 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Passeriformes ANCESTRAL SPECIES 5 ENSGT00940000156191 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00940000170035 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Passeriformes_d ANCESTRAL SPECIES 5 ENSGT00940000156191 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332 ENSGT00940000154940.p ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Passeriformes_g ANCESTRAL SPECIES ENSGT00940000156191 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332 ENSGT00940000154940.p ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Passeroidea ANCESTRAL SPECIES 1 ENSGT00940000156191 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332 ENSGT00940000154940.p ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Zebra finch MODERN SPECIES 27 CDIN1 (ENSTGUG00000011754) ENSTGUG00000028677 ENSTGUG00000019729 AQR (ENSTGUG00000011770) ACTC1 (ENSTGUG00000011789) ENSTGUG00000011793 STXBP6 (ENSTGUG00000011795) NOVA1 (ENSTGUG00000020125) FOXG1 (ENSTGUG00000022684) ENSTGUG00000029310 PRKD1 (ENSTGUG00000011808) G2E3 (ENSTGUG00000011816) SCFD1 (ENSTGUG00000011823) COCH (ENSTGUG00000011834) STRN3 (ENSTGUG00000011841) AP4S1 (ENSTGUG00000011859) #22 HECTD1 (ENSTGUG00000011864) #23 HEATR5A (ENSTGUG00000011873) DTD2 (ENSTGUG00000011886) NUBPL (ENSTGUG00000011890) ARHGAP5 (ENSTGUG00000011900) AKAP6 (ENSTGUG00000011906) NPAS3 (ENSTGUG00000011912) ENSTGUG00000027432 EGLN3 (ENSTGUG00000029575) EAPP (ENSTGUG00000024220) SNX6 (ENSTGUG00000011923) CFL2 (ENSTGUG00000011931) BAZ1A (ENSTGUG00000011934) ENSTGUG00000011942 SRP54 (ENSTGUG00000011945) Common canary MODERN SPECIES 3 ENSSCAG00000011510 DPH6 (ENSSCAG00000011496) ZNF770 (ENSSCAG00000011483) AQR (ENSSCAG00000011467) ACTC1 (ENSSCAG00000011460) ENSSCAG00000011459 STXBP6 (ENSSCAG00000011450) ENSSCAG00000011439 ENSSCAG00000011436 FOXG1 (ENSSCAG00000011429) PRKD1 (ENSSCAG00000011406) G2E3 (ENSSCAG00000011391) SCFD1 (ENSSCAG00000011356) COCH (ENSSCAG00000011326) STRN3 (ENSSCAG00000011190) AP4S1 (ENSSCAG00000011172) #22 HECTD1 (ENSSCAG00000011001) #23 HEATR5A (ENSSCAG00000010970) DTD2 (ENSSCAG00000010966) NUBPL (ENSSCAG00000010959) ARHGAP5 (ENSSCAG00000010952) AKAP6 (ENSSCAG00000010790) NPAS3 (ENSSCAG00000010750) ENSSCAG00000010705 EGLN3 (ENSSCAG00000010695) ENSSCAG00000010660 EAPP (ENSSCAG00000010655) ENSSCAG00000010652 ENSSCAG00000010645 CFL2 (ENSSCAG00000010641) BAZ1A (ENSSCAG00000010530) Medium ground finch MODERN SPECIES 4 ENSGFOG00000005229 ENSGFOG00000005212 DPH6 (ENSGFOG00000005191) ZNF770 (ENSGFOG00000005180) AQR (ENSGFOG00000004859) ACTC1 (ENSGFOG00000004813) ENSGFOG00000004805 STXBP6 (ENSGFOG00000004793) NOVA1 (ENSGFOG00000004780) ENSGFOG00000004765 PRKD1 (ENSGFOG00000004710) G2E3 (ENSGFOG00000004680) SCFD1 (ENSGFOG00000003995) COCH (ENSGFOG00000003866) STRN3 (ENSGFOG00000003655) AP4S1 (ENSGFOG00000003601) #22 HECTD1 (ENSGFOG00000003495) #23 HEATR5A (ENSGFOG00000003447) DTD2 (ENSGFOG00000003419) NUBPL (ENSGFOG00000003402) ARHGAP5 (ENSGFOG00000003373) AKAP6 (ENSGFOG00000003343) NPAS3 (ENSGFOG00000003313) EGLN3 (ENSGFOG00000002947) EAPP (ENSGFOG00000002927) SNX6 (ENSGFOG00000002910) CFL2 (ENSGFOG00000002878) BAZ1A (ENSGFOG00000002793) ENSGFOG00000002765 SRP54 (ENSGFOG00000002596) FAM177A1 (ENSGFOG00000002462) Flycatcher MODERN SPECIES 24 CDIN1 (ENSFALG00000005659) ENSFALG00000005664 DPH6 (ENSFALG00000005671) ZNF770 (ENSFALG00000005677) AQR (ENSFALG00000005683) ACTC1 (ENSFALG00000005688) GJD2 (ENSFALG00000022959) STXBP6 (ENSFALG00000025230) NOVA1 (ENSFALG00000028001) ENSFALG00000028363 FOXG1 (ENSFALG00000005708) PRKD1 (ENSFALG00000005728) G2E3 (ENSFALG00000005783) COCH (ENSFALG00000005818) STRN3 (ENSFALG00000005833) AP4S1 (ENSFALG00000023839) #22 HECTD1 (ENSFALG00000005851) #23 ENSFALG00000027956 DTD2 (ENSFALG00000028414) NUBPL (ENSFALG00000027668) ENSFALG00000025541 ARHGAP5 (ENSFALG00000005883) AKAP6 (ENSFALG00000005900) NPAS3 (ENSFALG00000005925) EGLN3 (ENSFALG00000026324) EAPP (ENSFALG00000028368) SNX6 (ENSFALG00000005957) CFL2 (ENSFALG00000024812) BAZ1A (ENSFALG00000005979) ENSFALG00000005984 SRP54 (ENSFALG00000005995) Great tit MODERN SPECIES 25 CDIN1 (ENSPMJG00000016597) ENSPMJG00000016598 DPH6 (ENSPMJG00000016602) ZNF770 (ENSPMJG00000016603) AQR (ENSPMJG00000016604) ACTC1 (ENSPMJG00000016605) ENSPMJG00000016606 STXBP6 (ENSPMJG00000016608) NOVA1 (ENSPMJG00000016609) FOXG1 (ENSPMJG00000016613) PRKD1 (ENSPMJG00000016618) G2E3 (ENSPMJG00000016619) SCFD1 (ENSPMJG00000016620) COCH (ENSPMJG00000016621) STRN3 (ENSPMJG00000016622) AP4S1 (ENSPMJG00000016623) #22 HECTD1 (ENSPMJG00000016624) #23 HEATR5A (ENSPMJG00000016642) DTD2 (ENSPMJG00000016643) ENSPMJG00000016644 NUBPL (ENSPMJG00000016645) ARHGAP5 (ENSPMJG00000016648) AKAP6 (ENSPMJG00000016649) NPAS3 (ENSPMJG00000016650) EGLN3 (ENSPMJG00000016652) SPTSSA (ENSPMJG00000016654) EAPP (ENSPMJG00000016655) SNX6 (ENSPMJG00000016656) CFL2 (ENSPMJG00000016657) BAZ1A (ENSPMJG00000016658) ENSPMJG00000016659 Neognathae_c ANCESTRAL SPECIES 6 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00550000074824 Kakapo MODERN SPECIES 21 DPH6 (ENSSHBG00005015364) ZNF770 (ENSSHBG00005015361) AQR (ENSSHBG00005015355) ACTC1 (ENSSHBG00005015350) ENSSHBG00005015347 ENSSHBG00005015341 STXBP6 (ENSSHBG00005015337) NOVA1 (ENSSHBG00005015333) ENSSHBG00005015327 FOXG1 (ENSSHBG00005015301) PRKD1 (ENSSHBG00005010583) G2E3 (ENSSHBG00005000523) SCFD1 (ENSSHBG00005000517) COCH (ENSSHBG00005004736) STRN3 (ENSSHBG00005004714) AP4S1 (ENSSHBG00005004700) #22 HECTD1 (ENSSHBG00005004649) #23 HEATR5A (ENSSHBG00005004034) DTD2 (ENSSHBG00005003767) NUBPL (ENSSHBG00005003744) ARHGAP5 (ENSSHBG00005003726) AKAP6 (ENSSHBG00005003692) NPAS3 (ENSSHBG00005003672) EGLN3 (ENSSHBG00005003658) SPTSSA (ENSSHBG00005003649) EAPP (ENSSHBG00005003642) SNX6 (ENSSHBG00005003622) CFL2 (ENSSHBG00005003606) BAZ1A (ENSSHBG00005003560) ENSSHBG00005003529 SRP54 (ENSSHBG00005003516) Golden eagle MODERN SPECIES 11 MEIS2 (ENSACCG00020001693) ENSACCG00020001683 CDIN1 (ENSACCG00020001673) DPH6 (ENSACCG00020001640) ZNF770 (ENSACCG00020001612) AQR (ENSACCG00020001515) ACTC1 (ENSACCG00020001493) ENSACCG00020001482 STXBP6 (ENSACCG00020001462) NOVA1 (ENSACCG00020001434) FOXG1 (ENSACCG00020001418) PRKD1 (ENSACCG00020001378) SCFD1 (ENSACCG00020001288) COCH (ENSACCG00020001226) STRN3 (ENSACCG00020001183) AP4S1 (ENSACCG00020001142) #22 HECTD1 (ENSACCG00020000924) #23 HEATR5A (ENSACCG00020000762) DTD2 (ENSACCG00020000678) NUBPL (ENSACCG00020000650) ARHGAP5 (ENSACCG00020000601) AKAP6 (ENSACCG00020000582) NPAS3 (ENSACCG00020000519) EGLN3 (ENSACCG00020000405) SPTSSA (ENSACCG00020000395) EAPP (ENSACCG00020000384) SNX6 (ENSACCG00020000377) CFL2 (ENSACCG00020000332) BAZ1A (ENSACCG00020000305) ENSACCG00020000294 SRP54 (ENSACCG00020000288) Australian saltwater crocodile MODERN SPECIES 64 CDIN1 (ENSCPRG00005018868) DPH6 (ENSCPRG00005018877) ENSCPRG00005018885 ZNF770 (ENSCPRG00005018886) AQR (ENSCPRG00005018887) ACTC1 (ENSCPRG00005018901) ENSCPRG00005018903 STXBP6 (ENSCPRG00005018904) ENSCPRG00005018908 NOVA1 (ENSCPRG00005018909) FOXG1 (ENSCPRG00005000210) PRKD1 (ENSCPRG00005000356) SCFD1 (ENSCPRG00005000469) COCH (ENSCPRG00005000540) STRN3 (ENSCPRG00005000658) AP4S1 (ENSCPRG00005001250) #22 HECTD1 (ENSCPRG00005001329) #23 HEATR5A (ENSCPRG00005002056) DTD2 (ENSCPRG00005003165) NUBPL (ENSCPRG00005003181) ARHGAP5 (ENSCPRG00005003188) AKAP6 (ENSCPRG00005003219) NPAS3 (ENSCPRG00005003280) ENSCPRG00005003366 EGLN3 (ENSCPRG00005003375) SPTSSA (ENSCPRG00005003398) EAPP (ENSCPRG00005003401) SNX6 (ENSCPRG00005003417) CFL2 (ENSCPRG00005003558) BAZ1A (ENSCPRG00005003577) ENSCPRG00005003622 Cryptodira ANCESTRAL SPECIES 3 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Chinese turtle MODERN SPECIES 559 G2E3 (ENSPSIG00000013682) SCFD1 (ENSPSIG00000011061) ENSPSIG00000011023 COCH (ENSPSIG00000009539) ENSPSIG00000001150 STRN3 (ENSPSIG00000006823) AP4S1 (ENSPSIG00000006800) #22 HECTD1 (ENSPSIG00000005810) #23 HEATR5A (ENSPSIG00000012315) DTD2 (ENSPSIG00000011850) NUBPL (ENSPSIG00000011296) Testudinoidea ANCESTRAL SPECIES 3 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Testudinidae ANCESTRAL SPECIES 2 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.n ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00550000074824 Abingdon island giant tortoise MODERN SPECIES 13 COCH (ENSCABG00000010049) STRN3 (ENSCABG00000008415) AP4S1 (ENSCABG00000008367) #22 HECTD1 (ENSCABG00000007872) #23 HEATR5A (ENSCABG00000007861) DTD2 (ENSCABG00000007860) NUBPL (ENSCABG00000007858) Goode s thornscrub tortoise MODERN SPECIES 18 ZNF770 (ENSGEVG00005003311) AQR (ENSGEVG00005003280) ACTC1 (ENSGEVG00005003255) ENSGEVG00005003247 STXBP6 (ENSGEVG00005003241) ENSGEVG00005003232 ENSGEVG00005003221 FOXG1 (ENSGEVG00005003211) PRKD1 (ENSGEVG00005003149) ENSGEVG00005003102 ENSGEVG00005003087 SCFD1 (ENSGEVG00005003003) ENSGEVG00005002963 ENSGEVG00005002940 STRN3 (ENSGEVG00005002888) AP4S1 (ENSGEVG00005002860) #22 HEATR5A (ENSGEVG00005001307) DTD2 (ENSGEVG00005000160) NUBPL (ENSGEVG00005000120) ARHGAP5 (ENSGEVG00005000079) ENSGEVG00005003955 AKAP6 (ENSGEVG00005003920) NPAS3 (ENSGEVG00005003782) EGLN3 (ENSGEVG00005003725) SPTSSA (ENSGEVG00005003714) EAPP (ENSGEVG00005003705) SNX6 (ENSGEVG00005003670) CFL2 (ENSGEVG00005003634) BAZ1A (ENSGEVG00005003590) ENSGEVG00005003559 SRP54 (ENSGEVG00005003538) Emydidae ANCESTRAL SPECIES 2 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573.m.b ENSGT00940000155573.m.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT01020000230798 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 Three-toed box turtle MODERN SPECIES 40 ENSTMTG00000008682 ZNF770 (ENSTMTG00000008699) AQR (ENSTMTG00000008715) ACTC1 (ENSTMTG00000008781) ENSTMTG00000008813 ENSTMTG00000008823 ENSTMTG00000008834 ENSTMTG00000008842 FOXG1 (ENSTMTG00000008849) PRKD1 (ENSTMTG00000008880) G2E3 (ENSTMTG00000009102) SCFD1 (ENSTMTG00000009144) ENSTMTG00000009193 ENSTMTG00000009208 STRN3 (ENSTMTG00000009240) AP4S1 (ENSTMTG00000009331) #22 HECTD1 (ENSTMTG00000009351) #23 HEATR5A (ENSTMTG00000009443) DTD2 (ENSTMTG00000009510) NUBPL (ENSTMTG00000009520) ARHGAP5 (ENSTMTG00000009538) AKAP6 (ENSTMTG00000009566) NPAS3 (ENSTMTG00000009693) ENSTMTG00000010048 EGLN3 (ENSTMTG00000010061) SPTSSA (ENSTMTG00000010079) EAPP (ENSTMTG00000010091) SNX6 (ENSTMTG00000010145) CFL2 (ENSTMTG00000010187) BAZ1A (ENSTMTG00000010196) ENSTMTG00000010311 painted turtle MODERN SPECIES 13 CRACD (ENSCPBG00000025111) AASDH (ENSCPBG00000025116) PPAT (ENSCPBG00000025119) ENSCPBG00000025122 PAICS (ENSCPBG00000025123) LONRF1 (ENSCPBG00000025127) TRMT9B (ENSCPBG00000025129) DLC1 (ENSCPBG00000025130) ENSCPBG00000025134 FOXG1 (ENSCPBG00000025135) PRKD1 (ENSCPBG00000025145) G2E3 (ENSCPBG00000025254) SCFD1 (ENSCPBG00000025264) COCH (ENSCPBG00000025281) STRN3 (ENSCPBG00000025355) AP4S1 (ENSCPBG00000025936) #22 HECTD1 (ENSCPBG00000025954) #23 HEATR5A (ENSCPBG00000026015) DTD2 (ENSCPBG00000026177) NUBPL (ENSCPBG00000026179) ARHGAP5 (ENSCPBG00000026180) AKAP6 (ENSCPBG00000026181) ENSCPBG00000026183 ENSCPBG00000026185 ENSCPBG00000026186 ENSCPBG00000026187 SPTSSA (ENSCPBG00000026189) EAPP (ENSCPBG00000026190) SNX6 (ENSCPBG00000026191) CFL2 (ENSCPBG00000026192) BAZ1A (ENSCPBG00000026193) Anura ANCESTRAL SPECIES 51 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000161963 ENSGT00940000156668 ENSGT00940000154710.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.b ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00940000159230 ENSGT00940000159481 ENSGT00530000063596.B ENSGT01030000234606.a.a.a.a Leishan spiny toad MODERN SPECIES 4 ENSLLEG00000028984 ENSLLEG00000028978 ENSLLEG00000028967 ENSLLEG00000028959 ENSLLEG00000028946 ENSLLEG00000028935 ENSLLEG00000028921 FBXO33 (ENSLLEG00000028885) ENSLLEG00000028871 ENSLLEG00000028175 G2E3 (ENSLLEG00000028014) SCFD1 (ENSLLEG00000027389) ENSLLEG00000027279 COCH (ENSLLEG00000026986) ENSLLEG00000026580 AP4S1 (ENSLLEG00000026477) #22 HECTD1 (ENSLLEG00000026038) #23 HEATR5A (ENSLLEG00000025581) DTD2 (ENSLLEG00000025505) NUBPL (ENSLLEG00000025415) ARHGAP5 (ENSLLEG00000025318) SPTLC2 (ENSLLEG00000025179) ENSLLEG00000025088 ENSLLEG00000025026 AHSA1 (ENSLLEG00000024801) VIPAS39 (ENSLLEG00000024632) NOXRED1 (ENSLLEG00000024535) TMED8 (ENSLLEG00000024475) ENSLLEG00000024315 GSTZ1 (ENSLLEG00000024088) POMT2 (ENSLLEG00000023528) Frog MODERN SPECIES 8 dph6 (ENSXETG00000012897) znf770 (ENSXETG00000044221) aqr (ENSXETG00000012901) actc1 (ENSXETG00000012911) gjd2 (ENSXETG00000048635) ENSXETG00000045860 stxbp6 (ENSXETG00000024859) nova1 (ENSXETG00000010244) ENSXETG00000044149 foxg1 (ENSXETG00000010247) prkd1 (ENSXETG00000010248) g2e3 (ENSXETG00000014180) scfd1 (ENSXETG00000014165) coch (ENSXETG00000014163) strn3 (ENSXETG00000014156) ap4s1 (ENSXETG00000014154) #22 hectd1 (ENSXETG00000014149) #23 heatr5a (ENSXETG00000014133) dtd2 (ENSXETG00000014131) nubpl (ENSXETG00000048432) arhgap5 (ENSXETG00000014123) akap6 (ENSXETG00000014113) npas3 (ENSXETG00000038495) egln3 (ENSXETG00000034504) sptssa (ENSXETG00000048311) ganc (ENSXETG00000000302) tmem87a (ENSXETG00000020990) vps39 (ENSXETG00000000301) pla2g4f (ENSXETG00000000299) gemin2 (ENSXETG00000000298) ENSXETG00000046728 Coelacanth MODERN SPECIES 1536 opn6b (ENSLACG00000011723) COCH (ENSLACG00000010719) STRN3 (ENSLACG00000009436) AP4S1 (ENSLACG00000009260) #22 ENSLACG00000009234 HECTD1 (ENSLACG00000007980) #23 HEATR5A (ENSLACG00000006330) DTD2 (ENSLACG00000005457) NUBPL (ENSLACG00000004719) ARHGAP5 (ENSLACG00000001505) Actinopterygii ANCESTRAL SPECIES 59 ENSGT00940000159180 ENSGT00940000155643 ENSGT00390000018465 ENSGT00420000029820 ENSGT00940000156668 ENSGT00940000154710.a.b.b ENSGT01090000260005.a.b.a.b.a.b ENSGT00940000156499 ENSGT00940000155573 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Neopterygii ANCESTRAL SPECIES 43 ENSGT00390000007463 ENSGT00940000163836.b ENSGT00940000155654 ENSGT00390000018116 ENSGT00940000157283 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000158601 ENSGT00940000161549.b ENSGT00940000167604 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Osteoglossocephalai ANCESTRAL SPECIES 13 ENSGT00940000160538 ENSGT00940000155654 ENSGT00390000018116 ENSGT00940000157283 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000158601 ENSGT00940000161549.b ENSGT00940000167604 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00940000167277 ENSGT00940000155704 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 Osteoglossiformes ANCESTRAL SPECIES 25 ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00550000074824 Asian bonytongue MODERN SPECIES 18 rbm4.3 (ENSSFOG00015015563) pmt (ENSSFOG00015015493) cnot8 (ENSSFOG00015015453) ENSSFOG00015014927 tbx20 (ENSSFOG00015014861) PTPN21 (ENSSFOG00015014833) BDKRB2 (ENSSFOG00015014813) ENSSFOG00015014804 foxg1a (ENSSFOG00015014800) ENSSFOG00015014792 PRKD1 (ENSSFOG00015014764) g2e3 (ENSSFOG00015014745) scfd1 (ENSSFOG00015014709) coch (ENSSFOG00015014673) strn3 (ENSSFOG00015014593) ap4s1 (ENSSFOG00015014560) #22 hectd1 (ENSSFOG00015014489) #23 HEATR5A (ENSSFOG00015014376) dtd2 (ENSSFOG00015031243) nubpl (ENSSFOG00015014340) ARHGAP5 (ENSSFOG00015014323) AKAP6 (ENSSFOG00015014266) NPAS3 (ENSSFOG00015032174) egln3 (ENSSFOG00015032021) sptssa (ENSSFOG00015026974) eapp (ENSSFOG00015014177) snx6 (ENSSFOG00015014115) cfl2 (ENSSFOG00015030770) BAZ1A (ENSSFOG00015014035) zgc:109986 (ENSSFOG00015013998) srp54 (ENSSFOG00015013920) P. kingsleyae MODERN SPECIES 454 ENSPKIG00000013206 coch (ENSPKIG00000013154) ENSPKIG00000013119 ENSPKIG00000013108 strn3 (ENSPKIG00000013006) ap4s1 (ENSPKIG00000012967) #22 ENSPKIG00000012953 ENSPKIG00000012935 ENSPKIG00000012924 hectd1 (ENSPKIG00000012862) #23 HEATR5A (ENSPKIG00000012520) Clupeocephala ANCESTRAL SPECIES 14 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 Otomorpha ANCESTRAL SPECIES 332 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.b Otophysi ANCESTRAL SPECIES 156 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000007395 ENSGT00530000069038 ENSGT00940000155369.A.d.a ENSGT00390000012435 ENSGT00940000157509.a ENSGT00510000048466 ENSGT00940000158830 ENSGT00940000157150 ENSGT00390000018516 ENSGT00940000159582 ENSGT00390000007686.b.c.b ENSGT00940000156103 ENSGT01030000234906 Characiphysae ANCESTRAL SPECIES 4 ENSGT00940000156798.h ENSGT00940000156798.g ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000007395 ENSGT00530000069038 ENSGT00940000155369.A.d.a ENSGT00390000012435 ENSGT00940000157509.a ENSGT00510000048466 ENSGT00940000158830 ENSGT00940000157150 ENSGT00390000018516 ENSGT00940000159582 ENSGT00390000007686.b.c.b ENSGT01030000234906 ENSGT00990000204360 Characiphysae_b ANCESTRAL SPECIES 20 ENSGT00940000164910 ENSGT00940000175994 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000007395 ENSGT00940000180386 ENSGT00530000069038 ENSGT00940000155369.A.d.a ENSGT00390000012435 ENSGT00940000157509.a ENSGT00510000048466 ENSGT00940000158830 ENSGT00940000157150 ENSGT00390000018516 ENSGT00940000159582 ENSGT00390000007686.b.c.b ENSGT01030000234906 Characoidei ANCESTRAL SPECIES 36 ENSGT00940000164910 ENSGT00940000175994 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000007395 ENSGT00530000069038 ENSGT00940000155369.A.d.a ENSGT00390000012435 ENSGT00940000157509.a ENSGT00510000048466 ENSGT00940000158830 ENSGT00940000157150 ENSGT00390000018516 ENSGT00940000159582 ENSGT00390000007686.b.c.b ENSGT00940000156103 ENSGT01030000234906 Red-bellied piranha MODERN SPECIES 90 ENSPNAG00000019507 bmf1 (ENSPNAG00000019481) tecpr2 (ENSPNAG00000019470) ankrd9 (ENSPNAG00000019457) rcor1 (ENSPNAG00000019427) traf3 (ENSPNAG00000003593) ehd4 (ENSPNAG00000019307) ENSPNAG00000019263 foxg1a (ENSPNAG00000003576) PRKD1 (ENSPNAG00000019084) g2e3 (ENSPNAG00000003565) scfd1 (ENSPNAG00000018968) opn6b (ENSPNAG00000018863) coch (ENSPNAG00000018823) strn3 (ENSPNAG00000018794) ap4s1 (ENSPNAG00000018724) #22 hectd1 (ENSPNAG00000018701) #23 Mexicana tetra MODERN SPECIES 24 ankrd9 (ENSAMXG00000025912) rcor1 (ENSAMXG00000008399) ENSAMXG00000038374 TRAF3 (ENSAMXG00000029095) ehd4 (ENSAMXG00000008348) ENSAMXG00000040047 ENSAMXG00000030538 ENSAMXG00000008296 foxg1a (ENSAMXG00000025911) PRKD1 (ENSAMXG00000041872) g2e3 (ENSAMXG00000008189) scfd1 (ENSAMXG00000038055) opn6b (ENSAMXG00000031878) coch (ENSAMXG00000008138) strn3 (ENSAMXG00000008128) ap4s1 (ENSAMXG00000008113) #22 hectd1 (ENSAMXG00000008101) #23 HEATR5A (ENSAMXG00000008093) ENSAMXG00000008076 MDGA2 (ENSAMXG00000033842) pole2 (ENSAMXG00000020108) ENSAMXG00000020153 dnaaf2 (ENSAMXG00000020173) lrr1 (ENSAMXG00000020181) KLHDC2 (ENSAMXG00000034271) NEMF (ENSAMXG00000020200) MOK (ENSAMXG00000020213) WDR20 (ENSAMXG00000043453) DYNC1H1 (ENSAMXG00000020234) ENSAMXG00000037734 ENSAMXG00000032337 Electric eel MODERN SPECIES 42 EIF2AK4 (ENSEEEG00000002488) ENSEEEG00000002484 bmf1 (ENSEEEG00000002481) tecpr2 (ENSEEEG00000002473) ankrd9 (ENSEEEG00000002469) rcor1 (ENSEEEG00000002466) traf3 (ENSEEEG00000002463) ehd4 (ENSEEEG00000002460) ENSEEEG00000002453 foxg1a (ENSEEEG00000002450) PRKD1 (ENSEEEG00000002449) g2e3 (ENSEEEG00000002446) scfd1 (ENSEEEG00000001975) coch (ENSEEEG00000001946) strn3 (ENSEEEG00000001466) ap4s1 (ENSEEEG00000001459) #22 hectd1 (ENSEEEG00000001458) #23 HEATR5A (ENSEEEG00000000618) mis18bp1 (ENSEEEG00000000235) ENSEEEG00000000224 MDGA2 (ENSEEEG00000000206) pole2 (ENSEEEG00000000140) ENSEEEG00000022844 ENSEEEG00000022842 gpc2 (ENSEEEG00000022836) ENSEEEG00000022833 zgc:112148 (ENSEEEG00000022831) ENSEEEG00000022830 ENSEEEG00000022829 USH1G (ENSEEEG00000022828) OTOP2 (ENSEEEG00000022827) Channel catfish MODERN SPECIES 28 ENSIPUG00000018349 Bmf (ENSIPUG00000018334) ankrd9 (ENSIPUG00000018327) tecpr2 (ENSIPUG00000018313) ankrd9 (ENSIPUG00000018301) rcor1 (ENSIPUG00000018261) traf3 (ENSIPUG00000018223) ehd4 (ENSIPUG00000018207) sptbn5 (ENSIPUG00000017917) foxg1a (ENSIPUG00000017896) prkd1 (ENSIPUG00000017836) G2e3 (ENSIPUG00000017787) SCFD1 (ENSIPUG00000017592) coch (ENSIPUG00000017549) strn3 (ENSIPUG00000017513) ap4s1 (ENSIPUG00000017502) #22 hectd1 (ENSIPUG00000017420) #23 heatr5a (ENSIPUG00000017162) mis18bp1 (ENSIPUG00000017101) ENSIPUG00000017073 ENSIPUG00000017059 MDGA2 (ENSIPUG00000016863) pole2 (ENSIPUG00000016731) klhdc1 (ENSIPUG00000016683) ENSIPUG00000016667 lrr1 (ENSIPUG00000016642) KLHDC2 (ENSIPUG00000016610) NEMF (ENSIPUG00000016545) mok (ENSIPUG00000016506) WDR20 (ENSIPUG00000016472) ENSIPUG00000016452 Cyprinoidei ANCESTRAL SPECIES 8 ENSGT00940000153881.a ENSGT00940000156570.b ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000007395 ENSGT00530000069038 ENSGT00940000155369.A.d.a ENSGT00940000154484.B.a.b.b.a ENSGT01010000222287.B.b.a.b.a ENSGT00390000004660.C.a.b ENSGT00940000157193 ENSGT00950000182852.A.b ENSGT01060000248589.D ENSGT00940000165937 ENSGT00940000157330 ENSGT00940000163885 ENSGT00530000063353.a.a Cyprininae DUPLICATION Cyprininae DUPLICATION Cyprininae ANCESTRAL SPECIES 205 ENSGT00940000153881.a.a.b ENSGT00940000156570.b.b ENSGT00940000157283.a ENSGT00390000018116.f ENSGT00940000155654.fb.a ENSGT00940000163836.b.a ENSGT00940000158601.m ENSGT00940000161549.a.a ENSGT00940000160678.a.x.a.a ENSGT00950000183024.a.b.a.a ENSGT00950000182865.b.a.a.e ENSGT00550000074845.a ENSGT01100000263524.G.e.a ENSGT00940000159386.l ENSGT00950000183095.a.b.a.a.b ENSGT00970000193421.B.bb.a #22 ENSGT00940000156572.c #23 ENSGT00390000006205.b.s ENSGT00390000007395.c ENSGT00530000069038 ENSGT00940000155369.A.d.a.j ENSGT01010000222287.B.b.a.b.a ENSGT00390000004660.C.a.b.b ENSGT00940000157193.a ENSGT00950000182852.A.b.d ENSGT01060000248589.D.a ENSGT00940000165937.a ENSGT00940000157330.n.a ENSGT00940000163885.m ENSGT00530000063353.a.a.a ENSGT00940000156761.a.b Cyprininae_a ANCESTRAL SPECIES 187 ENSGT00940000153881.a.a.b ENSGT00940000156570.b.b ENSGT00940000157283.a ENSGT00390000018116.f ENSGT00940000155654.fb.a ENSGT00940000163836.b.a ENSGT00940000158601.m ENSGT00940000161549.a.a ENSGT00940000160678.a.x.a.a ENSGT00950000183024.a.b.a.a ENSGT00950000182865.b.a.a.e ENSGT00550000074845.a ENSGT01100000263524.G.e.a ENSGT00940000159386.l ENSGT00950000183095.a.b.a.a.b ENSGT00970000193421.B.bb.a #22 ENSGT00940000156572.c #23 ENSGT00390000006205.b.s ENSGT00390000007395.c ENSGT00530000069038 ENSGT00940000155369.A.d.a.j ENSGT01010000222287.B.b.a.b.a ENSGT00390000004660.C.a.b.b ENSGT00940000157193.a ENSGT00950000182852.A.b.d ENSGT01060000248589.D.a ENSGT00940000165937.a ENSGT00940000157330.n.a ENSGT00940000163885.m ENSGT00940000170356 ENSGT00530000063353.a.a.a Common carp reference MODERN SPECIES 30 spata17 (ENSCCRG00000020428) esrrga (ENSCCRG00000071452) ENSCCRG00000003904 ptpreb (ENSCCRG00000027584) tecpr2 (ENSCCRG00000027643) rcor1 (ENSCCRG00000026947) traf3 (ENSCCRG00000026952) ehd4 (ENSCCRG00000026971) ENSCCRG00000015340 foxg1a (ENSCCRG00000015423) PRKD1 (ENSCCRG00000015041) g2e3 (ENSCCRG00000049295) scfd1 (ENSCCRG00000015700) coch (ENSCCRG00000015844) strn3 (ENSCCRG00000049681) ap4s1 (ENSCCRG00000055253) #22 hectd1 (ENSCCRG00000057578) #23 HEATR5A (ENSCCRG00000025920) mis18bp1 (ENSCCRG00000080791) ENSCCRG00000045322 ENSCCRG00000025542 ENSCCRG00000054524 tmem30b (ENSCCRG00000011263) kdm1a (ENSCCRG00000011285) ENSCCRG00000012856 ENSCCRG00000030436 qkia (ENSCCRG00000023635) pacrg (ENSCCRG00000052495) ctsl.1 (ENSCCRG00000043192) vgll2b (ENSCCRG00000043185) ythdf2 (ENSCCRG00000043130) Golden-line barbel MODERN SPECIES 133 esrrga (ENSSGRG00000042284) ENSSGRG00000042282 ENSSGRG00000042199 ENSSGRG00000042197 ptpreb (ENSSGRG00000038982) tecpr2 (ENSSGRG00000038766) ankrd9 (ENSSGRG00000038756) rcor1 (ENSSGRG00000038753) traf3 (ENSSGRG00000038747) ENSSGRG00000038746 ENSSGRG00000038744 PRKD1 (ENSSGRG00000038586) scfd1 (ENSSGRG00000037913) opn6b (ENSSGRG00000037902) coch (ENSSGRG00000037901) ap4s1 (ENSSGRG00000037900) #22 strn3 (ENSSGRG00000037496) hectd1 (ENSSGRG00000037381) #23 HEATR5A (ENSSGRG00000036382) mis18bp1 (ENSSGRG00000036378) MDGA2 (ENSSGRG00000036376) htr1d (ENSSGRG00000036375) kdm1a (ENSSGRG00000034954) LUZP1 (ENSSGRG00000034911) PTAFR (ENSSGRG00000034910) qkia (ENSSGRG00000034826) pacrg (ENSSGRG00000034823) ctsl.1 (ENSSGRG00000034822) ctsl.1 (ENSSGRG00000034821) ENSSGRG00000034820 ENSSGRG00000034819 Goldfish MODERN SPECIES 8 KCTD3 (ENSCARG00000043801) ptpreb (ENSCARG00000041130) tecpr2 (ENSCARG00000040136) ankrd9 (ENSCARG00000040097) rcor1 (ENSCARG00000039984) traf3 (ENSCARG00000039882) ehd4 (ENSCARG00000039847) ENSCARG00000039355 foxg1a (ENSCARG00000039309) PRKD1 (ENSCARG00000035239) g2e3 (ENSCARG00000034970) scfd1 (ENSCARG00000033404) opn6b (ENSCARG00000033259) coch (ENSCARG00000033246) strn3 (ENSCARG00000033055) ap4s1 (ENSCARG00000033021) #22 hectd1 (ENSCARG00000032879) #23 HEATR5A (ENSCARG00000030206) ENSCARG00000030080 MDGA2 (ENSCARG00000029307) ENSCARG00000029269 tmem30b (ENSCARG00000029244) kdm1a (ENSCARG00000029095) ENSCARG00000029077 ENSCARG00000029064 fam149b1 (ENSCARG00000029033) mrpl57 (ENSCARG00000029017) ttc7b (ENSCARG00000028166) calm1a (ENSCARG00000028100) ENSCARG00000027972 pgrmc2 (ENSCARG00000027959) Cyprininae ANCESTRAL SPECIES 325 ENSGT00940000158456 ENSGT00940000153881.a.a.a ENSGT00940000156570.b.a ENSGT00940000157283.b ENSGT00390000018116.e ENSGT00940000155654.fb.b ENSGT00940000163836.b.b ENSGT00940000158601.n ENSGT00940000160678.a.x.a.b ENSGT00950000183024.a.b.a.b ENSGT00950000182865.b.a.a.f ENSGT00550000074845.b ENSGT01100000263524.G.e.b ENSGT00940000159386.k ENSGT00950000183095.a.b.a.a.a ENSGT00970000193421.B.bb.b #22 ENSGT00940000156572.d #23 ENSGT00390000006205.b.t ENSGT00390000007395.d ENSGT00940000155369.A.d.a.i ENSGT00940000154484.B.a.b.b.a ENSGT00390000004660.C.a.b.a ENSGT00940000157193.b ENSGT00950000182852.A.b.c ENSGT01060000248589.D.b ENSGT00940000165937.b Cyprininae_a ANCESTRAL SPECIES 58 ENSGT00940000158456 ENSGT00940000153881.a.a.a ENSGT00940000156570.b.a ENSGT00940000157283.b ENSGT00390000018116.e ENSGT00940000155654.fb.b ENSGT00940000163836.b.b ENSGT00940000158601.n ENSGT00940000160678.a.x.a.b ENSGT00950000183024.a.b.a.b ENSGT00950000182865.b.a.a.f ENSGT00550000074845.b ENSGT01100000263524.G.e.b ENSGT00940000159386.k ENSGT00950000183095.a.b.a.a.a ENSGT00970000193421.B.bb.b #22 ENSGT00940000156572.d #23 ENSGT00390000006205.b.t ENSGT00390000007395.d ENSGT00940000155369.A.d.a.i ENSGT00940000154484.B.a.b.b.a ENSGT00390000004660.C.a.b.a ENSGT00940000157193.b ENSGT00950000182852.A.b.c ENSGT01060000248589.D.b ENSGT00940000165937.b ENSGT00940000157330.n.b ENSGT00940000163885.n ENSGT00530000063353.a.a.b ENSGT00940000156761.a.a ENSGT00950000185141 Golden-line barbel MODERN SPECIES 3 USH2A (ENSSGRG00000014605) KCTD3 (ENSSGRG00000014613) ptpreb (ENSSGRG00000014741) tecpr2 (ENSSGRG00000015947) ankrd9 (ENSSGRG00000016093) rcor1 (ENSSGRG00000016095) traf3 (ENSSGRG00000016096) ehd4 (ENSSGRG00000016213) ENSSGRG00000016214 PRKD1 (ENSSGRG00000016224) g2e3 (ENSSGRG00000016239) scfd1 (ENSSGRG00000016241) opn6b (ENSSGRG00000016648) coch (ENSSGRG00000016659) strn3 (ENSSGRG00000016669) ap4s1 (ENSSGRG00000017107) #22 hectd1 (ENSSGRG00000017121) #23 HEATR5A (ENSSGRG00000018206) mis18bp1 (ENSSGRG00000021047) MDGA2 (ENSSGRG00000021053) ENSSGRG00000021210 tmem30b (ENSSGRG00000021211) kdm1a (ENSSGRG00000021251) PTAFR (ENSSGRG00000022412) qkia (ENSSGRG00000022414) pacrg (ENSSGRG00000022470) ctsl.1 (ENSSGRG00000022471) vgll2b (ENSSGRG00000022472) ythdf2 (ENSSGRG00000022473) ENSSGRG00000022477 id3 (ENSSGRG00000022478) Goldfish MODERN SPECIES 3090 esrrga (ENSCARG00000053862) USH2A (ENSCARG00000053901) ENSCARG00000054886 ptpreb (ENSCARG00000054916) tecpr2 (ENSCARG00000056305) ankrd9 (ENSCARG00000056402) rcor1 (ENSCARG00000056408) traf3 (ENSCARG00000056615) ehd4 (ENSCARG00000056630) foxg1a (ENSCARG00000056644) PRKD1 (ENSCARG00000056713) g2e3 (ENSCARG00000057871) scfd1 (ENSCARG00000058103) coch (ENSCARG00000058904) strn3 (ENSCARG00000059044) ap4s1 (ENSCARG00000062380) #22 hectd1 (ENSCARG00000062411) #23 ENSCARG00000062691 mis18bp1 (ENSCARG00000062711) MDGA2 (ENSCARG00000062741) ENSCARG00000062994 tmem30b (ENSCARG00000063005) kdm1a (ENSCARG00000063045) LUZP1 (ENSCARG00000063172) PTAFR (ENSCARG00000063176) ENSCARG00000063186 qkia (ENSCARG00000063195) ENSCARG00000063222 ENSCARG00000063229 Cyprininae ANCESTRAL SPECIES ENSGT00970000193421.B.cb #22 Cyprininae_a ANCESTRAL SPECIES ENSGT00970000193421.B.cb #22 Common carp reference MODERN SPECIES 4 ENSCCRG00000063509 KCTD3 (ENSCCRG00000051349) ptpreb (ENSCCRG00000048836) tecpr2 (ENSCCRG00000056629) rcor1 (ENSCCRG00000012603) traf3 (ENSCCRG00000012605) ehd4 (ENSCCRG00000074709) foxg1a (ENSCCRG00000052818) PRKD1 (ENSCCRG00000037783) g2e3 (ENSCCRG00000015681) scfd1 (ENSCCRG00000049308) opn6b (ENSCCRG00000049622) coch (ENSCCRG00000049638) strn3 (ENSCCRG00000015878) ENSCCRG00000061159 ap4s1 (ENSCCRG00000003762) #22 hectd1 (ENSCCRG00000079062) #23 HEATR5A (ENSCCRG00000045375) mis18bp1 (ENSCCRG00000045330) ENSCCRG00000061330 ENSCCRG00000076684 htr1d (ENSCCRG00000059245) tmem30b (ENSCCRG00000068518) kdm1a (ENSCCRG00000014292) ENSCCRG00000074736 ENSCCRG00000066949 qkia (ENSCCRG00000052783) pacrg (ENSCCRG00000063874) ctsl.1 (ENSCCRG00000054639) vgll2b (ENSCCRG00000040846) ythdf2 (ENSCCRG00000043168) Zebrafish MODERN SPECIES 8 ptpreb (ENSDARG00000021151) tecpr2 (ENSDARG00000060835) ankrd9 (ENSDARG00000028804) rcor1 (ENSDARG00000031434) traf3 (ENSDARG00000022000) ENSDARG00000090708 ehd4 (ENSDARG00000054302) ENSDARG00000097683 foxg1a (ENSDARG00000070769) PRKD1 (ENSDARG00000075949) g2e3 (ENSDARG00000001313) scfd1 (ENSDARG00000000779) opn6b (ENSDARG00000098051) coch (ENSDARG00000024032) strn3 (ENSDARG00000001729) ap4s1 (ENSDARG00000054220) #22 hectd1 (ENSDARG00000054213) #23 HEATR5A (ENSDARG00000023999) mis18bp1 (ENSDARG00000042563) ENSDARG00000054128 MDGA2 (ENSDARG00000024017) htr1d (ENSDARG00000054124) tmem30b (ENSDARG00000054122) kdm1a (ENSDARG00000060679) ENSDARG00000114351 LUZP1 (ENSDARG00000075556) PTAFR (ENSDARG00000042370) qkia (ENSDARG00000097478) pacrg (ENSDARG00000087556) ctsl.1 (ENSDARG00000003902) vgll2b (ENSDARG00000053773) Clupeiformes ANCESTRAL SPECIES 128 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.b ENSGT00390000014679.d.a ENSGT00940000159201 ENSGT00940000164449 ENSGT00940000163117 ENSGT00940000164613 ENSGT00940000158908 ENSGT00950000182843.a.a.a.a ENSGT00940000158622 ENSGT00410000026259 ENSGT00390000003866.a.b.a ENSGT00910000145250 ENSGT00390000016904 Denticle herring MODERN SPECIES ENSDCDG00000000023 ENSDCDG00000000024 cinp (ENSDCDG00000000025) ENSDCDG00000000026 tecpr2 (ENSDCDG00000000027) ehd4 (ENSDCDG00000000028) foxg1a (ENSDCDG00000000030) ENSDCDG00000000032 PRKD1 (ENSDCDG00000000033) ENSDCDG00000000034 g2e3 (ENSDCDG00000000035) scfd1 (ENSDCDG00000000036) opn6b (ENSDCDG00000000037) coch (ENSDCDG00000000038) strn3 (ENSDCDG00000000039) ap4s1 (ENSDCDG00000000040) #22 hectd1 (ENSDCDG00000000041) #23 HEATR5A (ENSDCDG00000000042) DTD2 (ENSDCDG00000000043) ENSDCDG00000000044 ENSDCDG00000000045 ENSDCDG00000000046 zfand3 (ENSDCDG00000000047) ENSDCDG00000000048 MDGA1 (ENSDCDG00000000049) ENSDCDG00000000050 ENSDCDG00000000051 or64a1 (ENSDCDG00000000052) ENSDCDG00000000053 ENSDCDG00000000054 ENSDCDG00000000055 Euteleosteomorpha ANCESTRAL SPECIES 110 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00940000166431 ENSGT00390000012799 Protacanthopterygii ANCESTRAL SPECIES 22 ENSGT00390000015784 ENSGT00390000002751 ENSGT00940000157283 ENSGT00390000018116 ENSGT00940000155654 ENSGT00940000163836.b ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B.h ENSGT00940000154553.a.b ENSGT00810000125473.B.a ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00550000074824 Salmoninae ANCESTRAL SPECIES 125 ENSGT00390000015784.p ENSGT00390000002751.i ENSGT00940000157283.e ENSGT00390000018116.c ENSGT00940000155654.w ENSGT00940000163836.b.d ENSGT00940000158601.h ENSGT00940000161549.a.a ENSGT00940000167604 ENSGT00950000183024.a.b.a.i ENSGT00950000182865.b.a.a.a ENSGT00550000074845.c ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572.e #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a.b ENSGT00950000183193.B.h ENSGT00940000154553.a.b.q ENSGT00810000125473.B.a.a ENSGT00940000158051.e ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.cb ENSGT00940000154940.k.a ENSGT00950000183000.c.b.j ENSGT00940000158135.d ENSGT00390000012799.i ENSGT00550000074824.s Salmoninae_a ANCESTRAL SPECIES 8 ENSGT01000000220557 ENSGT00390000002751.i ENSGT00940000157283.e ENSGT00390000018116.c ENSGT00940000155654.w ENSGT00940000163836.b.d ENSGT00940000158601.h ENSGT00940000161549.a.a ENSGT00940000167604 ENSGT00950000183024.a.b.a.i ENSGT00950000182865.b.a.a.a ENSGT00550000074845.c ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572.e #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a.b ENSGT00950000183193.B.h ENSGT00940000154553.a.b.q ENSGT00810000125473.B.a.a ENSGT00940000158051.e ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332.cb ENSGT00940000154940.k.a ENSGT00950000183000.c.b.j ENSGT00940000158135.d ENSGT00390000012799.i ENSGT00550000074824.s Salmo ANCESTRAL SPECIES 8 ENSGT01000000220557 ENSGT00390000002751.i ENSGT00940000157283.e ENSGT00390000018116.c ENSGT00940000155654.w ENSGT00940000163836.b.d ENSGT00940000158601.h ENSGT00940000161549.a.a ENSGT00940000167604 ENSGT00950000183024.a.b.a.i ENSGT00950000182865.b.a.a.a ENSGT00550000074845.c ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572.e #23 ENSGT00390000006205.b.u ENSGT00940000153431.a.v.a.b ENSGT00950000183193.B.h.a ENSGT00940000154553.a.b.q ENSGT00810000125473.B.a.a ENSGT00940000158051.e ENSGT00940000167277 ENSGT00390000001332.bb ENSGT00940000154940.k.b ENSGT00950000183000.c.b.i ENSGT00940000158135.c ENSGT00390000012799.j ENSGT00550000074824.t ENSGT00390000006916.d.b.a River trout MODERN SPECIES 26 ENSSTUG00000024531 tecpr2 (ENSSTUG00000024493) ankrd9 (ENSSTUG00000024472) rcor1 (ENSSTUG00000024431) traf3 (ENSSTUG00000024386) ehd4 (ENSSTUG00000024369) SPTBN5 (ENSSTUG00000024338) ENSSTUG00000024324 ENSSTUG00000024321 PRKD1 (ENSSTUG00000023501) g2e3 (ENSSTUG00000023417) scfd1 (ENSSTUG00000022919) opn6b (ENSSTUG00000022884) coch (ENSSTUG00000022865) strn3 (ENSSTUG00000022743) ap4s1 (ENSSTUG00000022727) #22 hectd1 (ENSSTUG00000022570) #23 HEATR5A (ENSSTUG00000022095) dtd2 (ENSSTUG00000022064) nubpl (ENSSTUG00000021955) ARHGAP5 (ENSSTUG00000021943) AKAP6 (ENSSTUG00000021906) ENSSTUG00000021899 NPAS3 (ENSSTUG00000021327) egln3 (ENSSTUG00000021301) ENSSTUG00000021292 eapp (ENSSTUG00000051050) snx6 (ENSSTUG00000051009) cfl2 (ENSSTUG00000051005) BAZ1A (ENSSTUG00000051004) zgc:109986 (ENSSTUG00000051002) Atlantic salmon MODERN SPECIES ENSSSAG00000065859 ENSSSAG00000065866 ENSSSAG00000065864 tecpr2 (ENSSSAG00000065872) ankrd9 (ENSSSAG00000083291) rcor1 (ENSSSAG00000112622) ehd4 (ENSSSAG00000108761) ENSSSAG00000065930 ENSSSAG00000116615 PRKD1 (ENSSSAG00000066101) g2e3 (ENSSSAG00000071501) scfd1 (ENSSSAG00000071642) opn6b (ENSSSAG00000071695) coch (ENSSSAG00000071720) strn3 (ENSSSAG00000071739) ap4s1 (ENSSSAG00000094718) #22 hectd1 (ENSSSAG00000072645) #23 HEATR5A (ENSSSAG00000072849) dtd2 (ENSSSAG00000076941) NUBPL (ENSSSAG00000076831) ENSSSAG00000120473 arhgap5 (ENSSSAG00000076945) AKAP6 (ENSSSAG00000076953) NPAS3 (ENSSSAG00000076969) egln3 (ENSSSAG00000076988) eapp (ENSSSAG00000076989) snx6 (ENSSSAG00000077003) cfl2 (ENSSSAG00000119678) BAZ1A (ENSSSAG00000077671) SRP54 (ENSSSAG00000077694) ENSSSAG00000118940 Oncorhynchus ANCESTRAL SPECIES 6 ENSGT01000000220557 ENSGT00390000002751.i ENSGT00940000157283.e ENSGT00390000018116.c ENSGT00940000155654.w ENSGT00940000163836.b.d ENSGT00940000158601.h ENSGT00940000161549.a.a ENSGT00940000167604 ENSGT00950000183024.a.b.a.i ENSGT00950000182865.b.a.a.a ENSGT00550000074845.c ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572.e #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a.b ENSGT00950000183193.B.h ENSGT00940000154553.a.b.q ENSGT00810000125473.B.a.a ENSGT00940000158051.e ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332.bb ENSGT00940000154940.k.b ENSGT00950000183000.c.b.i ENSGT00940000158135.c ENSGT00390000012799.j ENSGT00550000074824.t Oncorhynchus_a ANCESTRAL SPECIES 10 ENSGT01000000220557 ENSGT00390000002751.i ENSGT00940000157283.e ENSGT00390000018116.c ENSGT00940000155654.w ENSGT00940000163836.b.d ENSGT00940000158601.h ENSGT00940000161549.a.a ENSGT00940000167604 ENSGT00950000183024.a.b.a.i ENSGT00950000182865.b.a.a.a ENSGT00550000074845.c ENSGT01100000263524.G.e ENSGT00940000159386 ENSGT00950000183095.a.b.a.a.d ENSGT00970000193421.B #22 ENSGT00940000156572.e #23 ENSGT00390000006205.b ENSGT00940000153431.a.v.a.b ENSGT00950000183193.B.h ENSGT00940000154553.a.b.q ENSGT00810000125473.B.a.a ENSGT00940000158051.e ENSGT00940000158745 ENSGT00940000167277 ENSGT00390000001332.bb ENSGT00940000154940.k.b ENSGT00950000183000.c.b.i ENSGT00940000158135.c ENSGT00390000012799.j ENSGT00550000074824.t Chinook salmon MODERN SPECIES 2895 ENSOTSG00005046401 tecpr2 (ENSOTSG00005046403) ankrd9 (ENSOTSG00005046405) rcor1 (ENSOTSG00005046406) traf3 (ENSOTSG00005046408) ehd4 (ENSOTSG00005046411) SPTBN5 (ENSOTSG00005046416) ENSOTSG00005046420 PRKD1 (ENSOTSG00005046422) g2e3 (ENSOTSG00005046449) ENSOTSG00005046450 scfd1 (ENSOTSG00005046451) opn6b (ENSOTSG00005046462) coch (ENSOTSG00005046464) strn3 (ENSOTSG00005046515) ap4s1 (ENSOTSG00005046536) #22 hectd1 (ENSOTSG00005046537) #23 HEATR5A (ENSOTSG00005046560) dtd2 (ENSOTSG00005047667) nubpl (ENSOTSG00005047668) ARHGAP5 (ENSOTSG00005047677) AKAP6 (ENSOTSG00005047685) ENSOTSG00005047690 Coho salmon MODERN SPECIES 27 ENSOKIG00005015487 ENSOKIG00005015478 tecpr2 (ENSOKIG00005015437) ankrd9 (ENSOKIG00005015430) rcor1 (ENSOKIG00005015403) traf3 (ENSOKIG00005015369) ehd4 (ENSOKIG00005015357) SPTBN5 (ENSOKIG00005015182) ENSOKIG00005015169 PRKD1 (ENSOKIG00005013388) g2e3 (ENSOKIG00005013265) scfd1 (ENSOKIG00005013130) opn6b (ENSOKIG00005013084) coch (ENSOKIG00005012823) strn3 (ENSOKIG00005010765) ap4s1 (ENSOKIG00005010660) #22 hectd1 (ENSOKIG00005010612) #23 HEATR5A (ENSOKIG00005010129) dtd2 (ENSOKIG00005010002) nubpl (ENSOKIG00005009896) ARHGAP5 (ENSOKIG00005009866) ENSOKIG00005009846 NPAS3 (ENSOKIG00005009455) egln3 (ENSOKIG00005009425) ENSOKIG00005009419 eapp (ENSOKIG00005009407) snx6 (ENSOKIG00005008760) cfl2 (ENSOKIG00005008698) BAZ1A (ENSOKIG00005008685) zgc:109986 (ENSOKIG00005008601) srp54 (ENSOKIG00005008527) Rainbow trout MODERN SPECIES 10 ENSOMYG00000069940 tecpr2 (ENSOMYG00000038473) ankrd9 (ENSOMYG00000038432) rcor1 (ENSOMYG00000038409) traf3 (ENSOMYG00000038356) ehd4 (ENSOMYG00000038344) ENSOMYG00000038323 ENSOMYG00000038304 PRKD1 (ENSOMYG00000037116) g2e3 (ENSOMYG00000036928) ENSOMYG00000059713 scfd1 (ENSOMYG00000036822) opn6b (ENSOMYG00000036731) coch (ENSOMYG00000036724) strn3 (ENSOMYG00000036019) ap4s1 (ENSOMYG00000035925) #22 hectd1 (ENSOMYG00000035713) #23 HEATR5A (ENSOMYG00000035291) dtd2 (ENSOMYG00000035093) NUBPL (ENSOMYG00000035080) ARHGAP5 (ENSOMYG00000035067) AKAP6 (ENSOMYG00000038985) NPAS3 (ENSOMYG00000038938) egln3 (ENSOMYG00000038907) ENSOMYG00000038878 eapp (ENSOMYG00000038851) snx6 (ENSOMYG00000037313) cfl2 (ENSOMYG00000037113) ENSOMYG00000037104 SRP54 (ENSOMYG00000037073) ENSOMYG00000019205 Huchen MODERN SPECIES 195 ENSHHUG00000027099 ENSHHUG00000027086 ENSHHUG00000027063 ENSHHUG00000027062 PRKD1 (ENSHHUG00000026745) g2e3 (ENSHHUG00000026721) scfd1 (ENSHHUG00000026674) opn6b (ENSHHUG00000026663) strn3 (ENSHHUG00000026639) ap4s1 (ENSHHUG00000026630) #22 hectd1 (ENSHHUG00000026608) #23 HEATR5A (ENSHHUG00000026563) dtd2 (ENSHHUG00000026549) nubpl (ENSHHUG00000026460) ARHGAP5 (ENSHHUG00000026454) ENSHHUG00000026450 ENSHHUG00000026444 NPAS3 (ENSHHUG00000026414) egln3 (ENSHHUG00000026409) ENSHHUG00000026406 eapp (ENSHHUG00000026393) snx6 (ENSHHUG00000026024) cfl2 (ENSHHUG00000026014) BAZ1A (ENSHHUG00000026005) zgc:109986 (ENSHHUG00000025995) Northern pike MODERN SPECIES 14 ENSELUG00000004470 tecpr2 (ENSELUG00000004453) ankrd9 (ENSELUG00000004434) rcor1 (ENSELUG00000004430) traf3 (ENSELUG00000004411) ehd4 (ENSELUG00000004390) ENSELUG00000004347 ENSELUG00000004283 foxg1a (ENSELUG00000004275) PRKD1 (ENSELUG00000004243) g2e3 (ENSELUG00000004136) scfd1 (ENSELUG00000004003) opn6b (ENSELUG00000003930) coch (ENSELUG00000003893) strn3 (ENSELUG00000003868) ap4s1 (ENSELUG00000003800) #22 hectd1 (ENSELUG00000003779) #23 HEATR5A (ENSELUG00000003720) dtd2 (ENSELUG00000032184) nubpl (ENSELUG00000003661) ARHGAP5 (ENSELUG00000003636) ENSELUG00000032036 AKAP6 (ENSELUG00000003612) NPAS3 (ENSELUG00000003567) egln3 (ENSELUG00000003505) sptssa (ENSELUG00000003498) eapp (ENSELUG00000003487) snx6 (ENSELUG00000003469) cfl2 (ENSELUG00000003457) BAZ1A (ENSELUG00000003446) zgc:109986 (ENSELUG00000003420) Acanthomorphata ANCESTRAL SPECIES 117 ENSGT00940000157393 ENSGT00390000004927 ENSGT00390000013207 ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 ENSGT00390000006205.b ENSGT00940000156572 #23 ENSGT01060000249637 ENSGT00950000183095.a.b.a.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00970000193421.B #22 ENSGT00940000153431.a.v.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 Euacanthomorphacea ANCESTRAL SPECIES 52 ENSGT00940000157393 ENSGT00390000004927 ENSGT00390000013207 ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 ENSGT00390000006205.b ENSGT00940000156572 #23 ENSGT01060000249637 ENSGT00950000183095.a.b.a.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00970000193421.B #22 ENSGT00940000153431.a.v.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 Pinecone sodierfish MODERN SPECIES 26 strn3 (ENSMMDG00005008810) ap4s1 (ENSMMDG00005008813) #22 Percomorphaceae ANCESTRAL SPECIES 51 ENSGT00940000157393 ENSGT00390000004927 ENSGT00390000013207 ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00940000155599.i.b ENSGT00940000155599.i.a.b ENSGT00390000004056 ENSGT00390000006205.b ENSGT00940000156572 #23 ENSGT01060000249637 ENSGT00950000183095.a.b.a.a ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00970000193421.B #22 ENSGT00940000153431.a.v.b ENSGT00940000153431.a.v.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00390000011854 ENSGT00940000159561.m Tiger tail seahorse MODERN SPECIES 43 SYT16 (ENSHCOG00000020828) ENSHCOG00000020841 ARHGAP5 (ENSHCOG00000020862) AKAP6 (ENSHCOG00000020979) NPAS3 (ENSHCOG00000021038) sptssa (ENSHCOG00000021055) eapp (ENSHCOG00000021078) ENSHCOG00000021223 foxg1a (ENSHCOG00000021221) ehd4 (ENSHCOG00000021219) g2e3 (ENSHCOG00000021216) scfd1 (ENSHCOG00000021210) coch (ENSHCOG00000021205) ENSHCOG00000021203 strn3 (ENSHCOG00000021201) ap4s1 (ENSHCOG00000021199) #22 ENSHCOG00000021198 #23 ENSHCOG00000021196 #23 ENSHCOG00000021195 ENSHCOG00000021193 #23 hikeshi (ENSHCOG00000021191) hikeshi (ENSHCOG00000021190) ENSHCOG00000021188 ENSHCOG00000021186 ENSHCOG00000021183 zgc:109986 (ENSHCOG00000021181) BAZ1A (ENSHCOG00000021177) cfl2 (ENSHCOG00000021173) ENSHCOG00000021171 snx6 (ENSHCOG00000021168) psma3 (ENSHCOG00000021162) Percomorphaceae_B ANCESTRAL SPECIES 11 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d Ovalentaria ANCESTRAL SPECIES 10 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 Atherinomorphae ANCESTRAL SPECIES 39 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000155369.A.d.a Oryzias ANCESTRAL SPECIES 3 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000153168.C.a.b ENSGT00940000160181.i ENSGT00940000158993 ENSGT00390000004599 ENSGT00390000008624 ENSGT00940000158221 ENSGT00990000204009 ENSGT00940000154618 ENSGT00940000154482.b.b.b.p ENSGT00940000153577.B ENSGT00940000161060 Oryzias_a ANCESTRAL SPECIES 11 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000153168.C.a.b ENSGT00940000160181.i ENSGT00940000158993 ENSGT00390000004599 ENSGT00390000008624 ENSGT00940000158221 ENSGT00990000204009 ENSGT00940000154618 ENSGT00940000154482.b.b.b.p ENSGT00940000153577.B ENSGT00940000161060 Chinese medaka MODERN SPECIES 631 fbxo34 (ENSOSIG00000018122) lgals3b (ENSOSIG00000018121) DACT1 (ENSOSIG00000018120) irf2bpl (ENSOSIG00000018078) timm9 (ENSOSIG00000018069) ENSOSIG00000018060 psma3 (ENSOSIG00000018012) snx6 (ENSOSIG00000017956) cfl2 (ENSOSIG00000017937) zgc:109986 (ENSOSIG00000017928) ENSOSIG00000017806 ehd4 (ENSOSIG00000017520) g2e3 (ENSOSIG00000017364) coch (ENSOSIG00000017074) strn3 (ENSOSIG00000013379) ap4s1 (ENSOSIG00000013343) #22 ENSOSIG00000013288 #23 hikeshi (ENSOSIG00000013285) PRKD1 (ENSOSIG00000012200) foxg1a (ENSOSIG00000012189) zgc:123321 (ENSOSIG00000012188) osr1 (ENSOSIG00000012187) alkbh1 (ENSOSIG00000012185) slirp (ENSOSIG00000012183) adck1 (ENSOSIG00000012077) ENSOSIG00000012073 nrxn3a (ENSOSIG00000011783) dio2 (ENSOSIG00000011773) dio2 (ENSOSIG00000011771) BCL11B (ENSOSIG00000011749) vrk1 (ENSOSIG00000011152) Japanese Medaka HdrR MODERN SPECIES 14 ENSORLG00000021949 ENSORLG00000027454 ENSORLG00000010245 psma3 (ENSORLG00000010288) snx6 (ENSORLG00000010318) cfl2 (ENSORLG00000010332) BAZ1A (ENSORLG00000010374) zgc:109986 (ENSORLG00000010399) ENSORLG00000010405 ehd4 (ENSORLG00000010433) g2e3 (ENSORLG00000010482) scfd1 (ENSORLG00000010536) ENSORLG00000022055 coch (ENSORLG00000010591) strn3 (ENSORLG00000010638) ap4s1 (ENSORLG00000010658) #22 hectd1 (ENSORLG00000010702) #23 hikeshi (ENSORLG00000010707) ENSORLG00000023329 ENSORLG00000027976 ENSORLG00000010716 foxg1a (ENSORLG00000010723) zgc:123321 (ENSORLG00000029255) ENSORLG00000029926 ENSORLG00000027646 ENSORLG00000028933 osr1 (ENSORLG00000010734) alkbh1 (ENSORLG00000010750) slirp (ENSORLG00000010761) adck1 (ENSORLG00000010777) nrxn3a (ENSORLG00000010813) Oryzias_b ANCESTRAL SPECIES 12 ENSGT00940000165313 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000153168.C.a.b ENSGT00940000160181.i ENSGT00940000158993 ENSGT00390000004599 ENSGT00390000008624 ENSGT00940000158221 ENSGT00990000204009 ENSGT00940000154618 ENSGT00940000154482.b.b.b.p ENSGT00940000153577.B ENSGT00940000161060 Indian medaka MODERN SPECIES ENSOMEG00000019966 psma3 (ENSOMEG00000019957) snx6 (ENSOMEG00000019916) cfl2 (ENSOMEG00000019883) BAZ1A (ENSOMEG00000019851) zgc:109986 (ENSOMEG00000019806) ENSOMEG00000019786 slc3a2b (ENSOMEG00000019772) ehd4 (ENSOMEG00000019758) g2e3 (ENSOMEG00000019733) scfd1 (ENSOMEG00000019697) ENSOMEG00000000520 ENSOMEG00000000656 coch (ENSOMEG00000019601) strn3 (ENSOMEG00000019588) ap4s1 (ENSOMEG00000019544) #22 ENSOMEG00000019532 #23 ENSOMEG00000019526 #23 PRKD1 (ENSOMEG00000019479) foxg1a (ENSOMEG00000019381) zgc:123321 (ENSOMEG00000019377) rdh14a (ENSOMEG00000019363) osr1 (ENSOMEG00000019345) alkbh1 (ENSOMEG00000019337) slirp (ENSOMEG00000019321) adck1 (ENSOMEG00000019290) nrxn3a (ENSOMEG00000019245) dio2 (ENSOMEG00000019199) setd3 (ENSOMEG00000019180) BCL11B (ENSOMEG00000019117) vrk1 (ENSOMEG00000019079) Javanese ricefish MODERN SPECIES 14 lgals3b (ENSOJAG00000017991) ENSOJAG00000017941 ENSOJAG00000017930 ENSOJAG00000017907 arid4a (ENSOJAG00000017865) psma3 (ENSOJAG00000017765) snx6 (ENSOJAG00000017479) cfl2 (ENSOJAG00000017459) zgc:109986 (ENSOJAG00000017424) ENSOJAG00000017419 ehd4 (ENSOJAG00000017357) g2e3 (ENSOJAG00000017345) scfd1 (ENSOJAG00000016699) coch (ENSOJAG00000016617) strn3 (ENSOJAG00000015993) ap4s1 (ENSOJAG00000015956) #22 ENSOJAG00000015909 #23 hikeshi (ENSOJAG00000015904) PRKD1 (ENSOJAG00000015216) foxg1a (ENSOJAG00000015190) YIPF7 (ENSOJAG00000015184) rdh14a (ENSOJAG00000015180) numb (ENSOJAG00000015133) exd2 (ENSOJAG00000015074) COQ8A (ENSOJAG00000014975) TATDN3 (ENSOJAG00000014917) fuca2 (ENSOJAG00000014879) ENSOJAG00000014800 txlnbb (ENSOJAG00000014744) dusp23a (ENSOJAG00000014725) gng2 (ENSOJAG00000014696) Cyprinodontiformes ANCESTRAL SPECIES 40 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000155369.A.d.a Cyprinodontoidei ANCESTRAL SPECIES 51 ENSGT00950000183181.B.a ENSGT00940000162596 ENSGT00390000012397 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000165169.b.a ENSGT00530000064222.b ENSGT00900000141196 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00390000001332 ENSGT00390000002766.b.b ENSGT00940000158745 ENSGT00940000158051 ENSGT00810000125473.B Poeciliinae ANCESTRAL SPECIES 8 ENSGT00950000183181.B.a ENSGT00390000012397 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000165169.b.a ENSGT00530000064222.b ENSGT00900000141196 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00390000001332 ENSGT00390000002766.b.b ENSGT00940000158745 ENSGT00940000158051 ENSGT00810000125473.B ENSGT00390000018691.c ENSGT01030000234620.a.b.a ENSGT00940000158836.a.a Poecilia ANCESTRAL SPECIES 57 ENSGT00950000183181.B.a ENSGT00390000012397 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000165169.b.a ENSGT00530000064222.b ENSGT00900000141196 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00390000001332 ENSGT00390000002766.b.b ENSGT00940000158745 ENSGT00940000158051 ENSGT00810000125473.B ENSGT00390000018691.c ENSGT01030000234620.a.b.a ENSGT00940000158836.a.a NAME_6 ANCESTRAL SPECIES 163 ENSGT00950000183181.B.a ENSGT00390000012397 ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000165169.b.a ENSGT00530000064222.b ENSGT00900000141196 ENSGT00940000160678.a ENSGT00950000183024.a.b.a ENSGT00390000001332 ENSGT00390000002766.b.b ENSGT00940000158745 ENSGT00940000158051 ENSGT00810000125473.B ENSGT01030000234620.a.b.a ENSGT00940000158836.a.a ENSGT00940000164854.a Amazon molly MODERN SPECIES 718 dkc1 (ENSPFOG00000018653) dact1 (ENSPFOG00000023754) ENSPFOG00000023947 timm9 (ENSPFOG00000018642) arid4a (ENSPFOG00000018637) psma3 (ENSPFOG00000018619) snx6 (ENSPFOG00000018600) cfl2 (ENSPFOG00000018584) BAZ1A (ENSPFOG00000018550) zgc:109986 (ENSPFOG00000018534) slc3a2b (ENSPFOG00000018522) ehd4 (ENSPFOG00000018511) g2e3 (ENSPFOG00000018499) scfd1 (ENSPFOG00000018476) strn3 (ENSPFOG00000018432) ap4s1 (ENSPFOG00000018416) #22 hectd1 (ENSPFOG00000018359) #23 lgals3b (ENSPFOG00000018342) Sailfin molly MODERN SPECIES 372 dkc1 (ENSPLAG00000003272) irf2bpl (ENSPLAG00000003320) ENSPLAG00000003381 timm9 (ENSPLAG00000003410) arid4a (ENSPLAG00000003432) psma3 (ENSPLAG00000003463) snx6 (ENSPLAG00000003489) cfl2 (ENSPLAG00000003498) BAZ1A (ENSPLAG00000003514) zgc:109986 (ENSPLAG00000003536) slc3a2b (ENSPLAG00000003555) ehd4 (ENSPLAG00000003565) g2e3 (ENSPLAG00000000532) scfd1 (ENSPLAG00000003632) strn3 (ENSPLAG00000003667) ap4s1 (ENSPLAG00000003677) #22 hectd1 (ENSPLAG00000003762) #23 hikeshi (ENSPLAG00000003779) lgals3b (ENSPLAG00000003808) Guppy MODERN SPECIES 453 ENSPREG00000004074 timm9 (ENSPREG00000004051) ENSPREG00000003986 ENSPREG00000003879 psma3 (ENSPREG00000003841) snx6 (ENSPREG00000003810) cfl2 (ENSPREG00000003752) BAZ1A (ENSPREG00000003601) zgc:109986 (ENSPREG00000003548) slc3a2b (ENSPREG00000003533) ehd4 (ENSPREG00000003513) g2e3 (ENSPREG00000003497) ENSPREG00000003478 scfd1 (ENSPREG00000003386) strn3 (ENSPREG00000003359) ap4s1 (ENSPREG00000003331) #22 hectd1 (ENSPREG00000003161) #23 hikeshi (ENSPREG00000003130) ENSPREG00000003117 jmjd7 (ENSPREG00000003079) foxg1a (ENSPREG00000003063) ENSPREG00000003042 PRKD1 (ENSPREG00000003011) eapp (ENSPREG00000002981) sptssa (ENSPREG00000002968) egln3 (ENSPREG00000002945) NPAS3 (ENSPREG00000002851) AKAP6 (ENSPREG00000002776) snapc1b (ENSPREG00000002744) ppp2r5eb (ENSPREG00000002688) SGPP1 (ENSPREG00000002668) Platyfish MODERN SPECIES 10 DACT1 (ENSXMAG00000004918) irf2bpl (ENSXMAG00000021096) ENSXMAG00000004916 timm9 (ENSXMAG00000029156) arid4a (ENSXMAG00000004904) psma3 (ENSXMAG00000004893) snx6 (ENSXMAG00000004865) cfl2 (ENSXMAG00000028653) BAZ1A (ENSXMAG00000004820) zgc:109986 (ENSXMAG00000022689) slc3a2b (ENSXMAG00000004796) ehd4 (ENSXMAG00000021228) g2e3 (ENSXMAG00000021115) scfd1 (ENSXMAG00000029757) strn3 (ENSXMAG00000009308) ap4s1 (ENSXMAG00000024600) #22 hectd1 (ENSXMAG00000009354) #23 lgals3b (ENSXMAG00000014963) fbxo34 (ENSXMAG00000025098) jmjd7 (ENSXMAG00000014939) foxg1a (ENSXMAG00000024501) PRKD1 (ENSXMAG00000001499) eapp (ENSXMAG00000028528) ENSXMAG00000021280 egln3 (ENSXMAG00000000068) NPAS3 (ENSXMAG00000000074) AKAP6 (ENSXMAG00000017748) snapc1b (ENSXMAG00000017760) ppp2r5eb (ENSXMAG00000021713) ENSXMAG00000004941 ENSXMAG00000000634 NAME_4 ANCESTRAL SPECIES 124 ENSGT00510000047092 ENSGT00950000183181.B.a ENSGT00940000162596 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000165169.b.a ENSGT00530000064222.b ENSGT00900000141196 ENSGT00940000160678.a Mummichog MODERN SPECIES 2434 ENSFHEG00000004578 dkc1 (ENSFHEG00000004627) dact1 (ENSFHEG00000004639) irf2bpl (ENSFHEG00000004684) timm9 (ENSFHEG00000004703) arid4a (ENSFHEG00000004741) psma3 (ENSFHEG00000004782) snx6 (ENSFHEG00000004824) cfl2 (ENSFHEG00000004854) BAZ1A (ENSFHEG00000004873) zgc:109986 (ENSFHEG00000004880) slc3a2b (ENSFHEG00000004886) ehd4 (ENSFHEG00000004908) ENSFHEG00000004922 strn3 (ENSFHEG00000004993) ap4s1 (ENSFHEG00000005021) #22 hectd1 (ENSFHEG00000005109) #23 hikeshi (ENSFHEG00000005130) hikeshi (ENSFHEG00000005142) lgals3b (ENSFHEG00000005165) fbxo34 (ENSFHEG00000005190) jmjd7 (ENSFHEG00000005212) foxg1a (ENSFHEG00000005233) Aplocheiloidei ANCESTRAL SPECIES 107 ENSGT00390000012397 ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b ENSGT00940000158135 ENSGT00390000012799 ENSGT00940000156646.d ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000155369.A.d.a Mangrove rivulus MODERN SPECIES 614 ENSKMAG00000008965 g2e3 (ENSKMAG00000008931) scfd1 (ENSKMAG00000008868) ENSKMAG00000008846 coch (ENSKMAG00000008818) strn3 (ENSKMAG00000008791) ap4s1 (ENSKMAG00000008756) #22 hectd1 (ENSKMAG00000008636) #23 hikeshi (ENSKMAG00000008610) ENSKMAG00000008532 Ovalentaria_B ANCESTRAL SPECIES 24 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 Pomacentridae ANCESTRAL SPECIES 78 ENSGT00940000158051.h ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 Bicolor damselfish MODERN SPECIES 325 foxg1a (ENSSPAG00000005592) ENSSPAG00000005529 ENSSPAG00000005512 ehd4 (ENSSPAG00000005490) g2e3 (ENSSPAG00000005396) scfd1 (ENSSPAG00000005313) coch (ENSSPAG00000005245) strn3 (ENSSPAG00000005208) ap4s1 (ENSSPAG00000005192) #22 hectd1 (ENSSPAG00000005095) #23 HEATR5A (ENSSPAG00000004991) dhrs13a.1 (ENSSPAG00000004932) dhrs13a.2 (ENSSPAG00000004890) ENSSPAG00000004851 slc3a2b (ENSSPAG00000004822) zgc:109986 (ENSSPAG00000004813) BAZ1A (ENSSPAG00000004699) cfl2 (ENSSPAG00000004688) snx6 (ENSSPAG00000004652) psma3 (ENSSPAG00000004606) arid4a (ENSSPAG00000004467) timm9 (ENSSPAG00000004448) irf2bpl (ENSSPAG00000004425) dact1 (ENSSPAG00000004415) Pomacentridae_A ANCESTRAL SPECIES 93 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b.a ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 Spiny chromis MODERN SPECIES 2383 strn3 (ENSAPOG00000006439) ap4s1 (ENSAPOG00000001033) #22 hectd1 (ENSAPOG00000006638) #23 Amphiprion ANCESTRAL SPECIES 181 ENSGT00940000159386 ENSGT00940000178078 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00940000158601 ENSGT00940000161549.a.a ENSGT00950000183024.a.b.a ENSGT00390000001332 ENSGT00390000002766.b.b ENSGT00940000158745.p ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b.a ENSGT00940000155599.i.a.b.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000158135 ENSGT00950000183000.c.b Clown anemonefish MODERN SPECIES 1211 ENSAOCG00000010474 strn3 (ENSAOCG00000010456) ENSAOCG00000010436 ap4s1 (ENSAOCG00000010426) #22 Orange clownfish MODERN SPECIES 9 ENSAPEG00000013604 foxg1a (ENSAPEG00000013581) ENSAPEG00000013566 ENSAPEG00000013439 ENSAPEG00000013375 ENSAPEG00000013356 ehd4 (ENSAPEG00000013326) g2e3 (ENSAPEG00000013279) scfd1 (ENSAPEG00000013158) ENSAPEG00000013135 coch (ENSAPEG00000013099) eapp (ENSAPEG00000013072) ENSAPEG00000013061 sptssa (ENSAPEG00000013049) strn3 (ENSAPEG00000012987) ap4s1 (ENSAPEG00000012966) #22 hectd1 (ENSAPEG00000012851) #23 HEATR5A (ENSAPEG00000012740) hikeshi (ENSAPEG00000012684) DHRS13 (ENSAPEG00000012661) dhrs13a.1 (ENSAPEG00000012638) ENSAPEG00000012622 ENSAPEG00000012613 dhrs13a.2 (ENSAPEG00000012591) MDGA2 (ENSAPEG00000012549) ENSAPEG00000012525 ENSAPEG00000012506 slc3a2b (ENSAPEG00000012493) zgc:109986 (ENSAPEG00000012482) BAZ1A (ENSAPEG00000012434) cfl2 (ENSAPEG00000012418) Cichlidae ANCESTRAL SPECIES 37 ENSGT00940000154553.a.b ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00390000015102.a.b ENSGT00940000155554 ENSGT00940000161060 ENSGT00940000153577.B ENSGT00940000154482.b.b.b ENSGT00990000204009 ENSGT00940000154618 ENSGT00940000158221 Midas cichlid MODERN SPECIES 272 ENSACIG00000011838 scfd1 (ENSACIG00000011848) coch (ENSACIG00000011889) strn3 (ENSACIG00000011917) ap4s1 (ENSACIG00000011954) #22 ENSACIG00000011962 #23 ENSACIG00000011980 #23 HEATR5A (ENSACIG00000011999) ENSACIG00000012086 hikeshi (ENSACIG00000012196) dhrs13a.2 (ENSACIG00000012209) MDGA2 (ENSACIG00000012232) ENSACIG00000012270 slc3a2b (ENSACIG00000012277) zgc:109986 (ENSACIG00000012304) ak7b (ENSACIG00000012334) vrk1 (ENSACIG00000012393) Pseudocrenilabrinae ANCESTRAL SPECIES 8 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000157038.a.b.u.b ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 Pseudocrenilabrinae_A ANCESTRAL SPECIES 6 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000157038.a.b.u.b ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 Haplochromini ANCESTRAL SPECIES 42 ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000157038.a.b.u.b ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 Burton s mouthbrooder MODERN SPECIES 569 egln3 (ENSHBUG00000015449) sptssa (ENSHBUG00000015484) eapp (ENSHBUG00000015496) PRKD1 (ENSHBUG00000015648) foxg1a (ENSHBUG00000015682) ENSHBUG00000015705 ENSHBUG00000016091 ehd4 (ENSHBUG00000016153) g2e3 (ENSHBUG00000016168) scfd1 (ENSHBUG00000016430) coch (ENSHBUG00000016503) strn3 (ENSHBUG00000000483) ap4s1 (ENSHBUG00000000489) #22 ENSHBUG00000016632 #23 Haplochromini_A ANCESTRAL SPECIES 44 ENSGT00940000154553.a.b ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 P. nyererei MODERN SPECIES 324 ENSPNYG00000014476 ENSPNYG00000014444 ENSPNYG00000014421 NPAS3 (ENSPNYG00000014398) egln3 (ENSPNYG00000014374) sptssa (ENSPNYG00000014367) eapp (ENSPNYG00000014361) PRKD1 (ENSPNYG00000014311) foxg1a (ENSPNYG00000014291) ENSPNYG00000013995 ehd4 (ENSPNYG00000013916) g2e3 (ENSPNYG00000013844) scfd1 (ENSPNYG00000013788) coch (ENSPNYG00000013761) strn3 (ENSPNYG00000013710) ap4s1 (ENSPNYG00000013670) #22 hectd1 (ENSPNYG00000013578) #23 HEATR5A (ENSPNYG00000013359) hikeshi (ENSPNYG00000013322) Haplochromini_B ANCESTRAL SPECIES 119 ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 Zebra mbuna MODERN SPECIES 142 ehd4 (ENSMZEG00005004542) g2e3 (ENSMZEG00005004527) scfd1 (ENSMZEG00005004486) coch (ENSMZEG00005004465) strn3 (ENSMZEG00005004442) ap4s1 (ENSMZEG00005004423) #22 hectd1 (ENSMZEG00005004328) #23 HEATR5A (ENSMZEG00005004107) Eastern happy MODERN SPECIES 5 ENSACLG00000018354 ubash3bb (ENSACLG00000018288) gkup (ENSACLG00000018216) usf1l (ENSACLG00000018193) ENSACLG00000018024 CLCN2 (ENSACLG00000017984) ENSACLG00000017974 ENSACLG00000017960 foxg1a (ENSACLG00000017908) ENSACLG00000017296 ehd4 (ENSACLG00000017182) g2e3 (ENSACLG00000017147) scfd1 (ENSACLG00000017070) coch (ENSACLG00000016965) strn3 (ENSACLG00000016888) ap4s1 (ENSACLG00000016857) #22 hectd1 (ENSACLG00000016633) #23 HEATR5A (ENSACLG00000016427) hikeshi (ENSACLG00000016412) ENSACLG00000016344 ENSACLG00000016329 tbcela (ENSACLG00000016175) ENSACLG00000016164 usp2a (ENSACLG00000016110) TLCD3A (ENSACLG00000016090) gemin4 (ENSACLG00000016073) ENSACLG00000016049 ENSACLG00000016018 ENSACLG00000015935 ENSACLG00000015922 smtnl (ENSACLG00000015818) Lyretail cichlid MODERN SPECIES 299 ENSNBRG00000022764 NPAS3 (ENSNBRG00000022746) egln3 (ENSNBRG00000022731) sptssa (ENSNBRG00000022727) eapp (ENSNBRG00000022713) PRKD1 (ENSNBRG00000022691) foxg1a (ENSNBRG00000022682) ENSNBRG00000022651 ENSNBRG00000022636 ehd4 (ENSNBRG00000022623) g2e3 (ENSNBRG00000022590) ENSNBRG00000022568 scfd1 (ENSNBRG00000022555) coch (ENSNBRG00000022518) strn3 (ENSNBRG00000022491) ap4s1 (ENSNBRG00000022483) #22 ENSNBRG00000022477 #23 HEATR5A (ENSNBRG00000022437) hikeshi (ENSNBRG00000022423) galcb (ENSNBRG00000022375) ENSNBRG00000022352 dicer1 (ENSNBRG00000022306) ENSNBRG00000022281 syne3 (ENSNBRG00000022250) gabrr2a (ENSNBRG00000022229) rragd (ENSNBRG00000022211) gja10a (ENSNBRG00000022195) ENSNBRG00000022187 ENSNBRG00000022175 GPR135 (ENSNBRG00000022167) HHIPL1 (ENSNBRG00000022132) Nile tilapia MODERN SPECIES 10 ARHGAP5 (ENSONIG00000001785) AKAP6 (ENSONIG00000001789) NPAS3 (ENSONIG00000037265) egln3 (ENSONIG00000035400) sptssa (ENSONIG00000036220) eapp (ENSONIG00000001809) PRKD1 (ENSONIG00000001814) foxg1a (ENSONIG00000029950) ENSONIG00000038497 ENSONIG00000001828 ehd4 (ENSONIG00000038089) g2e3 (ENSONIG00000001857) scfd1 (ENSONIG00000001862) coch (ENSONIG00000001879) strn3 (ENSONIG00000001884) ap4s1 (ENSONIG00000001896) #22 hectd1 (ENSONIG00000001899) #23 HEATR5A (ENSONIG00000001918) hikeshi (ENSONIG00000020832) slc3a2b (ENSONIG00000001729) ENSONIG00000032516 ENSONIG00000030475 zgc:109986 (ENSONIG00000001727) ENSONIG00000042145 ak7b (ENSONIG00000001719) ENSONIG00000041208 ENSONIG00000034768 ENSONIG00000031142 ENSONIG00000028025 map3k7 (ENSONIG00000011334) GPR135 (ENSONIG00000020519) Percomorphaceae_C ANCESTRAL SPECIES 12 ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d Percomorphaceae_D ANCESTRAL SPECIES 10 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 Carangaria ANCESTRAL SPECIES 10 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 Carangaria_A ANCESTRAL SPECIES 98 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b Barramundi perch MODERN SPECIES 10 OPN4 (ENSLCAG00010018412) ENSLCAG00010018422 ENSLCAG00010018428 myoz1b (ENSLCAG00010018430) SYNPO2L (ENSLCAG00010018435) sec24c (ENSLCAG00010018553) ENSLCAG00010019057 ENSLCAG00010019061 ENSLCAG00010019069 ENSLCAG00010019601 ENSLCAG00010021510 ENSLCAG00010021512 ENSLCAG00010021513 ENSLCAG00010021514 strn3 (ENSLCAG00010021518) ap4s1 (ENSLCAG00010021527) #22 Seriola ANCESTRAL SPECIES 102 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00940000158051 ENSGT00810000125473.B ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b Yellowtail amberjack MODERN SPECIES 2527 ENSSLDG00000020416 ap4s1 (ENSSLDG00000020407) #22 ENSSLDG00000020398 #23 Greater amberjack MODERN SPECIES 163 egln3 (ENSSDUG00000010655) sptssa (ENSSDUG00000010684) eapp (ENSSDUG00000010689) ENSSDUG00000010718 PRKD1 (ENSSDUG00000010737) foxg1a (ENSSDUG00000010776) ENSSDUG00000010788 ENSSDUG00000010913 ehd4 (ENSSDUG00000010947) ENSSDUG00000010967 g2e3 (ENSSDUG00000010993) ENSSDUG00000011152 scfd1 (ENSSDUG00000011167) coch (ENSSDUG00000011195) strn3 (ENSSDUG00000011224) ap4s1 (ENSSDUG00000011269) #22 hectd1 (ENSSDUG00000011288) #23 HEATR5A (ENSSDUG00000011377) hikeshi (ENSSDUG00000011450) dhrs13a.1 (ENSSDUG00000011461) dhrs13a.2 (ENSSDUG00000011468) ENSSDUG00000011482 ENSSDUG00000011490 Pleuronectoidei ANCESTRAL SPECIES 5 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000166431 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 ENSGT00940000162596 Tongue sole MODERN SPECIES ENSCSEG00000010730 ENSCSEG00000010747 DCTN1 (ENSCSEG00000010866) sptssa (ENSCSEG00000011058) eapp (ENSCSEG00000011062) PRKD1 (ENSCSEG00000011076) ENSCSEG00000011106 foxg1a (ENSCSEG00000011113) ENSCSEG00000011116 ENSCSEG00000011139 ehd4 (ENSCSEG00000011195) coch (ENSCSEG00000011217) scfd1 (ENSCSEG00000011230) g2e3 (ENSCSEG00000011272) strn3 (ENSCSEG00000011317) ap4s1 (ENSCSEG00000011445) #22 hectd1 (ENSCSEG00000011469) #23 HEATR5A (ENSCSEG00000011564) hikeshi (ENSCSEG00000011650) hikeshi (ENSCSEG00000011654) dhrs13a.2 (ENSCSEG00000011659) ENSCSEG00000011729 slc3a2b (ENSCSEG00000011824) zgc:109986 (ENSCSEG00000011830) ENSCSEG00000011841 ENSCSEG00000011854 cfl2 (ENSCSEG00000011860) snx6 (ENSCSEG00000011868) psma3 (ENSCSEG00000011909) arid4a (ENSCSEG00000011930) ENSCSEG00000011975 Turbot MODERN SPECIES 8 ppp2r5eb (ENSSMAG00000034196) wdr89 (ENSSMAG00000027044) SGPP1 (ENSSMAG00000034308) ENSSMAG00000036570 ENSSMAG00000037893 ENSSMAG00000001012 ENSSMAG00000034324 snapc1b (ENSSMAG00000001021) ENSSMAG00000028831 ENSSMAG00000024767 ENSSMAG00000037840 scfd1 (ENSSMAG00000001472) coch (ENSSMAG00000001511) ENSSMAG00000001535 strn3 (ENSSMAG00000001557) ap4s1 (ENSSMAG00000001721) #22 hectd1 (ENSSMAG00000001750) #23 HEATR5A (ENSSMAG00000001841) ENSSMAG00000001930 ENSSMAG00000001974 ENSSMAG00000029463 ENSSMAG00000002079 ENSSMAG00000001071 ENSSMAG00000000840 dtd2 (ENSSMAG00000000833) NUBPL (ENSSMAG00000000795) ARHGAP5 (ENSSMAG00000000757) ENSSMAG00000000960 ENSSMAG00000018689 NPAS3 (ENSSMAG00000034084) ENSSMAG00000034079 Anabantaria ANCESTRAL SPECIES 10 ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000168627 ENSGT00940000153804.B ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 ENSGT00940000162596 Anabantoidei ANCESTRAL SPECIES 9 ENSGT01030000234583.a.a.c.b.a.a.b.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000153804.B ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000012799 ENSGT00940000158135 ENSGT00950000183000.c.b ENSGT00940000154940 ENSGT00550000074912 ENSGT00940000156159 ENSGT00940000160102 ENSGT00940000162596 Climbing perch MODERN SPECIES 13 ENSATEG00000016407 egln3 (ENSATEG00000016315) sptssa (ENSATEG00000016285) eapp (ENSATEG00000016262) ENSATEG00000025189 ENSATEG00000027849 ENSATEG00000016142 foxg1a (ENSATEG00000016130) ENSATEG00000015643 ehd4 (ENSATEG00000015573) g2e3 (ENSATEG00000015553) scfd1 (ENSATEG00000015471) coch (ENSATEG00000015389) ENSATEG00000015368 strn3 (ENSATEG00000015245) ap4s1 (ENSATEG00000015227) #22 hectd1 (ENSATEG00000015098) #23 ENSATEG00000015068 HEATR5A (ENSATEG00000014961) ENSATEG00000014913 ENSATEG00000014717 ENSATEG00000014622 ENSATEG00000014605 ENSATEG00000014580 ENSATEG00000014569 zgc:109986 (ENSATEG00000014565) BAZ1A (ENSATEG00000014536) ENSATEG00000028863 cfl2 (ENSATEG00000028424) snx6 (ENSATEG00000014485) psma3 (ENSATEG00000014448) Siamese fighting fish MODERN SPECIES 12 ENSBSLG00000007633 ENSBSLG00000007626 ENSBSLG00000007622 NPAS3 (ENSBSLG00000007614) egln3 (ENSBSLG00000007597) ENSBSLG00000007595 sptssa (ENSBSLG00000007592) eapp (ENSBSLG00000007589) ENSBSLG00000007349 foxg1a (ENSBSLG00000007331) ehd4 (ENSBSLG00000006613) g2e3 (ENSBSLG00000006025) scfd1 (ENSBSLG00000005976) coch (ENSBSLG00000005967) strn3 (ENSBSLG00000005421) ap4s1 (ENSBSLG00000005279) #22 hectd1 (ENSBSLG00000012567) #23 ENSBSLG00000012558 hikeshi (ENSBSLG00000011962) DHRS13 (ENSBSLG00000011482) dhrs13a.2 (ENSBSLG00000011472) slc3a2b (ENSBSLG00000011462) ENSBSLG00000011458 ENSBSLG00000010948 zgc:109986 (ENSBSLG00000010904) BAZ1A (ENSBSLG00000010664) cfl2 (ENSBSLG00000010594) snx6 (ENSBSLG00000009550) psma3 (ENSBSLG00000009358) arid4a (ENSBSLG00000009126) timm9 (ENSBSLG00000009099) Zig-zag eel MODERN SPECIES 14 ENSMAMG00000000034 ENSMAMG00000000033 NPAS3 (ENSMAMG00000000032) ENSMAMG00000026367 egln3 (ENSMAMG00000000031) sptssa (ENSMAMG00000000030) eapp (ENSMAMG00000000029) ENSMAMG00000000028 ENSMAMG00000000027 ehd4 (ENSMAMG00000000024) ENSMAMG00000028251 coch (ENSMAMG00000000022) ENSMAMG00000000021 g2e3 (ENSMAMG00000000019) strn3 (ENSMAMG00000000018) ap4s1 (ENSMAMG00000000017) #22 hectd1 (ENSMAMG00000000016) #23 ENSMAMG00000000015 ENSMAMG00000026657 ENSMAMG00000025908 ENSMAMG00000000010 ENSMAMG00000027189 ENSMAMG00000027251 ENSMAMG00000000008 Eupercaria ANCESTRAL SPECIES 9 ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000013207 ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 Tetraodontidae ANCESTRAL SPECIES 3 ENSGT00940000158836.a.a ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000158601 ENSGT00940000159386 ENSGT00550000074845 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000004056 ENSGT00940000155599.i.b ENSGT00940000164564.e.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 ENSGT00940000159561.m ENSGT00900000141196 ENSGT00530000064222.b ENSGT00940000165169.b.a ENSGT00940000160102 ENSGT00940000156159 ENSGT00550000074912 ENSGT00940000154940 ENSGT00950000183000.c.b Tetraodon MODERN SPECIES 26 ENSTNIG00000002634 tekt2 (ENSTNIG00000019548) usf2 (ENSTNIG00000002633) LMNA (ENSTNIG00000002632) scn1bb (ENSTNIG00000002631) ENSTNIG00000002630 NT5C3B (ENSTNIG00000002615) FKBP10 (ENSTNIG00000002614) p3h4 (ENSTNIG00000002613) ENSTNIG00000002612 ENSTNIG00000000161 ENSTNIG00000002610 ENSTNIG00000002609 g2e3 (ENSTNIG00000002608) strn3 (ENSTNIG00000002607) ap4s1 (ENSTNIG00000002606) #22 hectd1 (ENSTNIG00000002605) #23 HEATR5A (ENSTNIG00000002604) hikeshi (ENSTNIG00000002603) dhrs13a.2 (ENSTNIG00000002602) haus2 (ENSTNIG00000001117) ENSTNIG00000002601 lrrc57 (ENSTNIG00000002600) ENSTNIG00000002599 atg14 (ENSTNIG00000002598) tbpl2 (ENSTNIG00000002597) jmjd7 (ENSTNIG00000002596) lgals3b (ENSTNIG00000002595) timm9 (ENSTNIG00000002594) arid4a (ENSTNIG00000002593) psma3 (ENSTNIG00000001368) Fugu MODERN SPECIES 11 snapc1b (ENSTRUG00000003344) SYT16 (ENSTRUG00000026371) SGPP1 (ENSTRUG00000025016) AKAP6 (ENSTRUG00000023905) NPAS3 (ENSTRUG00000004071) egln3 (ENSTRUG00000024714) sptssa (ENSTRUG00000027104) eapp (ENSTRUG00000031136) PRKD1 (ENSTRUG00000002543) foxg1a (ENSTRUG00000012582) ehd4 (ENSTRUG00000022398) coch (ENSTRUG00000027600) scfd1 (ENSTRUG00000011884) ENSTRUG00000011636 strn3 (ENSTRUG00000011310) ap4s1 (ENSTRUG00000011227) #22 hectd1 (ENSTRUG00000011055) #23 hikeshi (ENSTRUG00000025477) dhrs13a.2 (ENSTRUG00000010572) haus2 (ENSTRUG00000023669) ENSTRUG00000010421 lrrc57 (ENSTRUG00000010341) ENSTRUG00000028870 ENSTRUG00000028990 atg14 (ENSTRUG00000023016) trf3 (ENSTRUG00000009283) jmjd7 (ENSTRUG00000009235) fbxo34 (ENSTRUG00000020409) lgals3b (ENSTRUG00000009104) timm9 (ENSTRUG00000019688) arid4a (ENSTRUG00000008557) Eupecaria_A ANCESTRAL SPECIES 10 ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000178078 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000013207 ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 Ballan wrasse MODERN SPECIES 569 ENSLBEG00000020156 ehd4 (ENSLBEG00000020127) g2e3 (ENSLBEG00000020092) scfd1 (ENSLBEG00000020023) ENSLBEG00000019993 coch (ENSLBEG00000019947) ENSLBEG00000019921 strn3 (ENSLBEG00000019840) ap4s1 (ENSLBEG00000019788) #22 ENSLBEG00000019764 #23 hectd1 (ENSLBEG00000019658) #23 HEATR5A (ENSLBEG00000019543) hikeshi (ENSLBEG00000019476) dhrs13a.1 (ENSLBEG00000019189) dhrs13a.2 (ENSLBEG00000019100) ENSLBEG00000019070 ENSLBEG00000019055 Eupecaria_B ANCESTRAL SPECIES 11 ENSGT00810000125473.B ENSGT00940000166226 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00940000168627 ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000013207 ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 Eupecaria_C ANCESTRAL SPECIES 8 ENSGT00950000183193.B ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845.g ENSGT00940000159386 ENSGT00940000168627.e.b ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000156646.d ENSGT00940000155369.A.d.a ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00940000165169.b.a ENSGT00530000064222.b Eupercaria_incertae_sedis ANCESTRAL SPECIES 25 ENSGT00940000154553.a.b ENSGT00810000125473.B ENSGT00970000193381.a.b.a.b.a.b.a.a.b.a ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000158601 ENSGT00950000182865.b.a.a ENSGT00550000074845.g ENSGT00940000159386 ENSGT00940000168627.e.b ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000156646.d ENSGT00940000155369.A.d.a Large yellow croaker MODERN SPECIES 489 LRRC24 (ENSLCRG00005000787) LONP1 (ENSLCRG00005000889) RSPH6A (ENSLCRG00005001107) dohh (ENSLCRG00005001111) cherp (ENSLCRG00005001127) klf2a (ENSLCRG00005001164) EPS15L1 (ENSLCRG00005001166) ENSLCRG00005001174 lrrc57 (ENSLCRG00005001177) MDGA2 (ENSLCRG00005001190) slc3a2b (ENSLCRG00005001250) scfd1 (ENSLCRG00005001262) coch (ENSLCRG00005001307) ENSLCRG00005003973 strn3 (ENSLCRG00005003979) ap4s1 (ENSLCRG00005004138) #22 hectd1 (ENSLCRG00005004149) #23 HEATR5A (ENSLCRG00005004193) hikeshi (ENSLCRG00005004392) DHRS13 (ENSLCRG00005004394) ENSLCRG00005004459 LRRC7 (ENSLCRG00005004474) ENSLCRG00005004943 nasp (ENSLCRG00005004949) SOX14 (ENSLCRG00005004953) CLDN18 (ENSLCRG00005004954) HS2ST1 (ENSLCRG00005004956) lmo4b (ENSLCRG00005004958) kyat3.2 (ENSLCRG00005004968) LRRC8C (ENSLCRG00005005676) lrrc8db (ENSLCRG00005005678) European seabass MODERN SPECIES 3 ENSDLAG00005031932 ENSDLAG00005027290 ENSDLAG00005002749 ENSDLAG00005015349 ENSDLAG00005003137 ENSDLAG00005017851 ENSDLAG00005005403 ENSDLAG00005011207 ENSDLAG00005011518 ENSDLAG00005035082 g2e3 (ENSDLAG00005016919) scfd1 (ENSDLAG00005034923) coch (ENSDLAG00005030270) ENSDLAG00005026562 strn3 (ENSDLAG00005031168) ap4s1 (ENSDLAG00005034366) #22 hectd1 (ENSDLAG00005016703) #23 HEATR5A (ENSDLAG00005031319) ENSDLAG00005016884 ENSDLAG00005031937 ENSDLAG00005002934 ENSDLAG00005031753 ENSDLAG00005017789 ENSDLAG00005028158 Gilthead seabream MODERN SPECIES 7 jmjd7 (ENSSAUG00010002128) fbxo34 (ENSSAUG00010002132) ENSSAUG00010002140 ENSSAUG00010002170 mgaa (ENSSAUG00010002437) ENSSAUG00010002446 tyro3 (ENSSAUG00010002447) lrrc57 (ENSSAUG00010002452) haus2 (ENSSAUG00010002453) ENSSAUG00010002457 ENSSAUG00010002460 ENSSAUG00010002462 ENSSAUG00010002464 ENSSAUG00010002468 strn3 (ENSSAUG00010002537) ap4s1 (ENSSAUG00010005736) #22 hectd1 (ENSSAUG00010005756) #23 HEATR5A (ENSSAUG00010005864) hikeshi (ENSSAUG00010008685) ENSSAUG00010008687 dhrs13a.2 (ENSSAUG00010008688) ENSSAUG00010008692 ENSSAUG00010008693 ENSSAUG00010008694 coch (ENSSAUG00010008696) ENSSAUG00010008699 coch (ENSSAUG00010008704) ENSSAUG00010008708 scfd1 (ENSSAUG00010008727) g2e3 (ENSSAUG00010010170) ehd4 (ENSSAUG00010010174) Perciformes ANCESTRAL SPECIES 36 ENSGT00950000183095.a.b.a.a ENSGT00940000153804.B ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000013207 ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 Cottioidei ANCESTRAL SPECIES 66 ENSGT00950000183095.a.b.a.a ENSGT00940000168627 ENSGT00950000182865.b.a.a ENSGT00550000074845 ENSGT00940000159386 ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00390000011854 ENSGT00940000159561.m ENSGT00900000141196 ENSGT00940000165169.b.a ENSGT00940000157224.ab.c Stickleback MODERN SPECIES 261 scfd1 (ENSGACG00000012926) g2e3 (ENSGACG00000012915) ENSGACG00000012906 strn3 (ENSGACG00000012892) ap4s1 (ENSGACG00000012879) #22 hectd1 (ENSGACG00000012853) #23 slc3a2b (ENSGACG00000012841) Lumpfish MODERN SPECIES 14 exoc3l4 (ENSCLMG00005008896) ENSCLMG00005008897 ENSCLMG00005008898 ENSCLMG00005008916 ENSCLMG00005008921 cdca4 (ENSCLMG00005008922) ahsa1b (ENSCLMG00005008924) ENSCLMG00005008928 pgrmc2 (ENSCLMG00005008930) asmt2 (ENSCLMG00005008932) jade1 (ENSCLMG00005009036) g2e3 (ENSCLMG00005009038) scfd1 (ENSCLMG00005009049) coch (ENSCLMG00005009065) ENSCLMG00005009066 ap4s1 (ENSCLMG00005009067) #22 ENSCLMG00005009068 #23 HEATR5A (ENSCLMG00005009093) hikeshi (ENSCLMG00005012630) dhrs13a.2 (ENSCLMG00005012631) ENSCLMG00005012632 ENSCLMG00005012670 ENSCLMG00005013160 lrrc57 (ENSCLMG00005013161) tyro3 (ENSCLMG00005013163) ENSCLMG00005013233 ENSCLMG00005013235 atg14 (ENSCLMG00005013237) tbpl2 (ENSCLMG00005013238) jmjd7 (ENSCLMG00005013241) ENSCLMG00005013244 Perciformes_a ANCESTRAL SPECIES 48 ENSGT00940000158051 ENSGT00940000158745 ENSGT00390000002766.b.b ENSGT00390000001332 ENSGT00950000183024.a.b.a ENSGT00940000160678.a ENSGT00940000161549.a.a ENSGT00940000158601 ENSGT00940000159386 ENSGT00550000074845 ENSGT00950000182865.b.a.a ENSGT00940000153804.B ENSGT00950000183095.a.b.a.a ENSGT00970000193421.B #22 ENSGT00940000156572 #23 ENSGT00390000006205.b ENSGT00390000004056 ENSGT00940000155599.i.a.b ENSGT00940000155599.i.b ENSGT00940000155369.A.d.a ENSGT00940000156646.d ENSGT00390000013207 ENSGT00390000004927 ENSGT00940000157393 ENSGT00940000155879 ENSGT00940000156269.a.a ENSGT00940000164564.f.a ENSGT00940000163520.A.a.a.a.a.a.a.g.b ENSGT00390000011854 Pike perch MODERN SPECIES 473 ENSSLUG00000020657 strn3 (ENSSLUG00000020687) ENSSLUG00000021030 ap4s1 (ENSSLUG00000021031) #22 Channel bull blenny MODERN SPECIES 14 atl1 (ENSCGOG00000022711) ENSCGOG00000022727 pygl (ENSCGOG00000022761) NPAS3 (ENSCGOG00000013332) egln3 (ENSCGOG00000013359) sptssa (ENSCGOG00000013360) eapp (ENSCGOG00000013361) PRKD1 (ENSCGOG00000013397) ENSCGOG00000015193 ehd4 (ENSCGOG00000015288) coch (ENSCGOG00000016770) scfd1 (ENSCGOG00000016938) g2e3 (ENSCGOG00000017712) ccdc65 (ENSCGOG00000017717) strn3 (ENSCGOG00000017733) ap4s1 (ENSCGOG00000018201) #22 hectd1 (ENSCGOG00000018233) #23 HEATR5A (ENSCGOG00000018946) hikeshi (ENSCGOG00000020116) dhrs13a.1 (ENSCGOG00000020129) dhrs13a.2 (ENSCGOG00000020222) MDGA2 (ENSCGOG00000020243) slc3a2b (ENSCGOG00000020793) lrrc57 (ENSCGOG00000020832) tyro3 (ENSCGOG00000020834) ENSCGOG00000020858 ENSCGOG00000020860 ENSCGOG00000020864 ENSCGOG00000020884 atg14 (ENSCGOG00000020885) tbpl2 (ENSCGOG00000020891) Cod MODERN SPECIES 18 ENSGMOG00000030538 ENSGMOG00000036545 ENSGMOG00000037191 ENSGMOG00000019814 ENSGMOG00000036276 ENSGMOG00000030535 ENSGMOG00000028819 ENSGMOG00000023565 ENSGMOG00000024480 ENSGMOG00000034342 ENSGMOG00000014910 coch (ENSGMOG00000001380) ENSGMOG00000006205 g2e3 (ENSGMOG00000006176) strn3 (ENSGMOG00000006143) ap4s1 (ENSGMOG00000006133) #22 hectd1 (ENSGMOG00000006063) #23 HEATR5A (ENSGMOG00000033228) ENSGMOG00000022996 ENSGMOG00000006936 ENSGMOG00000014294 ENSGMOG00000031559 ENSGMOG00000006507 ENSGMOG00000006518 tyro3 (ENSGMOG00000013831) ENSGMOG00000023984 ENSGMOG00000007697 ENSGMOG00000027362 jmjd7 (ENSGMOG00000004910) tbpl2 (ENSGMOG00000004886) atg14 (ENSGMOG00000028864) Spotted gar MODERN SPECIES 673 tecpr2 (ENSLOCG00000009804) cinp (ENSLOCG00000009791) ENSLOCG00000009783 ehd4 (ENSLOCG00000009774) SPTBN5 (ENSLOCG00000009748) PLA2G4B (ENSLOCG00000009738) ENSLOCG00000009734 NOVA1 (ENSLOCG00000009727) foxg1a (ENSLOCG00000017702) PRKD1 (ENSLOCG00000009700) ENSLOCG00000009691 scfd1 (ENSLOCG00000009663) opn6b (ENSLOCG00000009657) coch (ENSLOCG00000009643) STRN3 (ENSLOCG00000009618) ap4s1 (ENSLOCG00000009611) #22 hectd1 (ENSLOCG00000009590) #23 HEATR5A (ENSLOCG00000009580) ENSLOCG00000009572 dtd2 (ENSLOCG00000009563) nubpl (ENSLOCG00000009552) ARHGAP5 (ENSLOCG00000009544) AKAP6 (ENSLOCG00000009529) NPAS3 (ENSLOCG00000009512) egln3 (ENSLOCG00000009500) sptssa (ENSLOCG00000009497) eapp (ENSLOCG00000009484) snx6 (ENSLOCG00000009469) cfl2 (ENSLOCG00000009463) BAZ1A (ENSLOCG00000009448) srp54 (ENSLOCG00000009440) Reedfish MODERN SPECIES 7 ENSECRG00000018199 gjd2b (ENSECRG00000018171) stxbp6 (ENSECRG00000018146) NOVA1 (ENSECRG00000018086) ENSECRG00000018053 ENSECRG00000018036 foxg1a (ENSECRG00000018023) ENSECRG00000018008 ENSECRG00000017979 ENSECRG00000017951 g2e3 (ENSECRG00000017924) scfd1 (ENSECRG00000017794) opn6b (ENSECRG00000017745) coch (ENSECRG00000017642) STRN3 (ENSECRG00000017315) ap4s1 (ENSECRG00000017237) #22 hectd1 (ENSECRG00000017052) #23 HEATR5A (ENSECRG00000016971) dtd2 (ENSECRG00000016948) nubpl (ENSECRG00000016921) ARHGAP5 (ENSECRG00000016897) AKAP6 (ENSECRG00000016857) ENSECRG00000016843 ssna1 (ENSECRG00000016832) NPAS3 (ENSECRG00000016667) egln3 (ENSECRG00000016585) ENSECRG00000016567 ENSECRG00000016548 sptssa (ENSECRG00000016533) eapp (ENSECRG00000016516) snx6 (ENSECRG00000016414) Elephant shark MODERN SPECIES 1513 PRKD1 (ENSCMIG00000004110) G2E3 (ENSCMIG00000004024) scfd1 (ENSCMIG00000003855) coch (ENSCMIG00000003753) strn3 (ENSCMIG00000003666) ap4s1 (ENSCMIG00000003608) #22 hectd1 (ENSCMIG00000003581) #23 HEATR5A (ENSCMIG00000003460) dtd2 (ENSCMIG00000003352) ENSCMIG00000003348 ENSCMIG00000003345 nubpl (ENSCMIG00000003335) ARHGAP5 (ENSCMIG00000003319) AKAP6 (ENSCMIG00000003312) ENSCMIG00000003304 NPAS3 (ENSCMIG00000003270) egln3 (ENSCMIG00000003240) ENSCMIG00000003238 sptssa (ENSCMIG00000003234) snx6 (ENSCMIG00000002881) cfl2 (ENSCMIG00000002696) Cyclostomata ANCESTRAL SPECIES ENSGT00970000193421.B #22 Hagfish MODERN SPECIES 490 ENSEBUG00000006037 ENSEBUG00000004835 ENSEBUG00000014770 PDPK1 (ENSEBUG00000005160) ENSEBUG00000009292 #22 ENSEBUG00000015593 ENSEBUG00000008931