Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00940000161993	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a ##9	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Cetacea	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a ##9	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000154563.m.b #15	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a ##9	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000154563.m.b #15	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00390000000337	ENSGT01030000234551.k.d.b.b.c.a ##9	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000154563.m.b #15	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B.l #31	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000015821.h #35	ENSGT00390000002766.b.b #36	ENSGT00390000001332.m	ENSGT00940000154940
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT01000000214889	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT01100000263504.a.b.a.b.a.b.ib #14	ENSGT00940000154563.m.b #15	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B.l #31	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332.m	ENSGT00940000178928 #37	ENSGT00940000154940
Monodontidae	ANCESTRAL SPECIES	11	ENSGT01100000263511.b.a.a.a.b.a.a.a.b.a.b.a.a.b.a.a.a.a.b.a #8	ENSGT01030000234551.k.d.b.a.a.b ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT01100000263504.a.b.a.b.a.b.ib #14	ENSGT00940000154563.m.b #15	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B.l #31	ENSGT00940000166226 #32	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332.m	ENSGT00940000178928 #37	ENSGT00940000154940
Beluga whale	MODERN SPECIES	44	ENSDLEG00000018089 #7	ENSDLEG00000018087 #8	GZMH (ENSDLEG00000018044) #9	ENSDLEG00000017935 #10	GZMB (ENSDLEG00000017882) #11	STXBP6 (ENSDLEG00000017850) #12	NOVA1 (ENSDLEG00000017821) #13	ENSDLEG00000017806 #14	ENSDLEG00000017774 #15	FOXG1 (ENSDLEG00000017768) #16	PRKD1 (ENSDLEG00000017654) #17	G2E3 (ENSDLEG00000017592) #18	SCFD1 (ENSDLEG00000016160) #19	COCH (ENSDLEG00000015954) #20	STRN3 (ENSDLEG00000015905) #21	AP4S1 (ENSDLEG00000015895) #22	HECTD1 (ENSDLEG00000015830) #23	HEATR5A (ENSDLEG00000013600) #24	DTD2 (ENSDLEG00000013452) #25	GPR33 (ENSDLEG00000013450) #26	NUBPL (ENSDLEG00000013432) #27	ENSDLEG00000012791 #28	ARHGAP5 (ENSDLEG00000012779) #29	ENSDLEG00000012755 #30	ENSDLEG00000012743 #31	ENSDLEG00000012728 #32	NPAS3 (ENSDLEG00000012702) #33	EGLN3 (ENSDLEG00000012687) #34	ENSDLEG00000012666 #35	SPTSSA (ENSDLEG00000012661) #36	ENSDLEG00000012640 #37
Narwhal	MODERN SPECIES	308	ENSMMNG00015017063 ##9	GZMH (ENSMMNG00015017095) #9	ENSMMNG00015017165 #10	GZMB (ENSMMNG00015017321) #11	STXBP6 (ENSMMNG00015017391) #12	NOVA1 (ENSMMNG00015017472) #13	ENSMMNG00015017696 #14	ENSMMNG00015017733 #15	FOXG1 (ENSMMNG00015017758) #16	PRKD1 (ENSMMNG00015017800) #17	G2E3 (ENSMMNG00015017922) #18	SCFD1 (ENSMMNG00015017990) #19	ENSMMNG00015018060	COCH (ENSMMNG00015018104) #20	STRN3 (ENSMMNG00015018258) #21	AP4S1 (ENSMMNG00015018404) #22	HECTD1 (ENSMMNG00015018463) #23	HEATR5A (ENSMMNG00015018679) #24	DTD2 (ENSMMNG00015018797) #25	GPR33 (ENSMMNG00015018815) #26	NUBPL (ENSMMNG00015018841) #27	ENSMMNG00015018891 #28	ARHGAP5 (ENSMMNG00015018917) #29	AKAP6 (ENSMMNG00015018988) #31	NPAS3 (ENSMMNG00015019078) #33	EGLN3 (ENSMMNG00015019291) #34	SPTSSA (ENSMMNG00015019349) #36	ENSMMNG00015019371	ENSMMNG00015019404 #37	SNX6 (ENSMMNG00015019443)	CFL2 (ENSMMNG00015019505)
Vaquita	MODERN SPECIES	11	GZMH (ENSPSNG00000014903) #9	ENSPSNG00000015017 #10	GZMB (ENSPSNG00000015289) #11	STXBP6 (ENSPSNG00000015449) #12	NOVA1 (ENSPSNG00000015532) #13	ENSPSNG00000015685 #14	ENSPSNG00000015742	ENSPSNG00000015766 #15	FOXG1 (ENSPSNG00000015806) #16	PRKD1 (ENSPSNG00000015859) #17	G2E3 (ENSPSNG00000015993) #18	SCFD1 (ENSPSNG00000016119) #19	ENSPSNG00000016285	COCH (ENSPSNG00000016321) #20	STRN3 (ENSPSNG00000016653) #21	AP4S1 (ENSPSNG00000016811) #22	HECTD1 (ENSPSNG00000016911) #23	HEATR5A (ENSPSNG00000017090) #24	DTD2 (ENSPSNG00000017275) #25	NUBPL (ENSPSNG00000017395) #27	ENSPSNG00000017433 #28	ARHGAP5 (ENSPSNG00000017472) #29	AKAP6 (ENSPSNG00000017615) #31	NPAS3 (ENSPSNG00000017739) #33	EGLN3 (ENSPSNG00000018355) #34	ENSPSNG00000018446 ##35	SPTSSA (ENSPSNG00000018482) #36	ENSPSNG00000018496	ENSPSNG00000018519	ENSPSNG00000018564 #37	SNX6 (ENSPSNG00000018667)
Dolphin	MODERN SPECIES	3098																AP4S1 (ENSTTRG00000003740) #22	HECTD1 (ENSTTRG00000003749) #23	HEATR5A (ENSTTRG00000003780) #24	DTD2 (ENSTTRG00000003788) #25
Sperm whale	MODERN SPECIES	2	ENSPCTG00005005862 ##9	ENSPCTG00005005891 ##9	GZMH (ENSPCTG00005005924) #9	ENSPCTG00005005984 #10	GZMB (ENSPCTG00005006025) #11	STXBP6 (ENSPCTG00005006076) #12	NOVA1 (ENSPCTG00005006112) #13	ENSPCTG00005006193 #15	FOXG1 (ENSPCTG00005006210) #16	PRKD1 (ENSPCTG00005006240) #17	ENSPCTG00005006324	G2E3 (ENSPCTG00005006361) #18	SCFD1 (ENSPCTG00005006460) #19	COCH (ENSPCTG00005006564) #20	STRN3 (ENSPCTG00005006776) #21	AP4S1 (ENSPCTG00005006956) #22	HECTD1 (ENSPCTG00005007027) #23	ENSPCTG00005007130	HEATR5A (ENSPCTG00005007185) #24	DTD2 (ENSPCTG00005007351) #25	GPR33 (ENSPCTG00005007371) #26	ENSPCTG00005007379	ENSPCTG00005007388	NUBPL (ENSPCTG00005007415) #27	ENSPCTG00005007465 #28	ARHGAP5 (ENSPCTG00005007494) #29	AKAP6 (ENSPCTG00005007589) #30	NPAS3 (ENSPCTG00005007723) #33	EGLN3 (ENSPCTG00005008171) #34	SPTSSA (ENSPCTG00005008208) #36	ENSPCTG00005008216
Blue whale	MODERN SPECIES	11	ENSBMSG00010012441 ##9	GZMH (ENSBMSG00010012451) #9	ENSBMSG00010012468 #10	GZMB (ENSBMSG00010012482) #11	STXBP6 (ENSBMSG00010012498) #12	NOVA1 (ENSBMSG00010012536) #13	ENSBMSG00010012567	ENSBMSG00010012582	ENSBMSG00010012592 #15	FOXG1 (ENSBMSG00010012602) #16	PRKD1 (ENSBMSG00010012633) #17	ENSBMSG00010012692 #18	SCFD1 (ENSBMSG00010012723) #19	COCH (ENSBMSG00010012783) #20	STRN3 (ENSBMSG00010012838) #21	AP4S1 (ENSBMSG00010012875) #22	HECTD1 (ENSBMSG00010012906) #23	HEATR5A (ENSBMSG00010012932) #24	DTD2 (ENSBMSG00010012949) #25	GPR33 (ENSBMSG00010012958) #26	NUBPL (ENSBMSG00010012964) #27	ARHGAP5 (ENSBMSG00010012978) #29	AKAP6 (ENSBMSG00010013021) #30	NPAS3 (ENSBMSG00010013089) #33	EGLN3 (ENSBMSG00010013202) #34	ENSBMSG00010013221 #35	ENSBMSG00010013231	ENSBMSG00010013245	ENSBMSG00010013286	ENSBMSG00010013306	ENSBMSG00010013323
Pecora	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.i ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.f #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a #10	ENSGT01030000234551.k.d.b.b.c.a ##9	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00940000163541.g	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00950000183000.c.b	ENSGT00940000158135
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	370																ENSCHYG00000018784 #22
Yarkand deer	MODERN SPECIES	1064																ENSCHYG00000009018 #22
Yarkand deer	DUPLICATION
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	4	LOXL1 (ENSCHYG00000020877)	ENSCHYG00000020922 ##9	ENSCHYG00000021005 #9	ENSCHYG00000021099 #10	GZMB (ENSCHYG00000021148) #11	STXBP6 (ENSCHYG00000021255) #12	NOVA1 (ENSCHYG00000021362) #13	ENSCHYG00000021616	ENSCHYG00000021647 #16	ENSCHYG00000021689 #17	ENSCHYG00000022162 #18	ENSCHYG00000022282 #19	ENSCHYG00000022664	ENSCHYG00000022706 #20	ENSCHYG00000022798 #21	ENSCHYG00000022926 #22	ENSCHYG00000023105 #23	ENSCHYG00000023175 #24	ENSCHYG00000023238 #25	ENSCHYG00000023264 #26	ENSCHYG00000023278 #27	ENSCHYG00000023411 #28	ENSCHYG00000023459 #29	ENSCHYG00000023691 #17	ENSCHYG00000023954 #18	ENSCHYG00000024112 #19	ENSCHYG00000024190	ENSCHYG00000004572 #20	ENSCHYG00000004693 #21	ENSCHYG00000004784 #22	ENSCHYG00000004808 #23
Yarkand deer	MODERN SPECIES	4	ENSCHYG00000022798 #21	ENSCHYG00000022926 #22	ENSCHYG00000023105 #23	ENSCHYG00000023175 #24	ENSCHYG00000023238 #25	ENSCHYG00000023264 #26	ENSCHYG00000023278 #27	ENSCHYG00000023411 #28	ENSCHYG00000023459 #29	ENSCHYG00000023691 #17	ENSCHYG00000023954 #18	ENSCHYG00000024112 #19	ENSCHYG00000024190	ENSCHYG00000004572 #20	ENSCHYG00000004693 #21	ENSCHYG00000004784 #22	ENSCHYG00000004808 #23	ENSCHYG00000004859 #24	ENSCHYG00000005154 #25	ENSCHYG00000005175 #26	ENSCHYG00000005213 #27	ENSCHYG00000005261 #28	ENSCHYG00000005283 #29	ENSCHYG00000005372 #30	ENSCHYG00000005433 #30	NPAS3 (ENSCHYG00000005548) #33	EGLN3 (ENSCHYG00000006118) #34	ENSCHYG00000006192	SPTSSA (ENSCHYG00000006204) #36	ENSCHYG00000006229	EAPP (ENSCHYG00000006243)
Yarkand deer	MODERN SPECIES	3	ACIN1 (ENSCHYG00000015090)	CDH24 (ENSCHYG00000016351)	PSMB11 (ENSCHYG00000016390)	ENSCHYG00000016436	C14orf93 (ENSCHYG00000016592)	AJUBA (ENSCHYG00000016731)	HAUS4 (ENSCHYG00000016879)	PRMT5 (ENSCHYG00000017109)	RBM23 (ENSCHYG00000018246)	REM2 (ENSCHYG00000018358)	LRP10 (ENSCHYG00000018426)	MMP14 (ENSCHYG00000018620)	SLC7A7 (ENSCHYG00000018767)	ENSCHYG00000018959	OXA1L (ENSCHYG00000019267)	ENSCHYG00000019500 #22	ENSCHYG00000019651	ABHD4 (ENSCHYG00000019707)	ENSCHYG00000019819	ENSCHYG00000019884	TRDV3 (ENSCHYG00000020003)	ENSCHYG00000009457	TRDV2 (ENSCHYG00000009486)	ENSCHYG00000009499	OR4E1 (ENSCHYG00000009527)	OR4E2 (ENSCHYG00000009552)	ENSCHYG00000009578	OR10G3 (ENSCHYG00000009604)	ENSCHYG00000009619	SALL2 (ENSCHYG00000009676)	METTL3 (ENSCHYG00000009777)
Yarkand deer	MODERN SPECIES	4	GSKIP (ENSCHYG00000024574)	ATG2B (ENSCHYG00000024459)	ENSCHYG00000024448	ENSCHYG00000024438	BDKRB1 (ENSCHYG00000024385)	ENSCHYG00000024356	ENSCHYG00000024343	TCL1A (ENSCHYG00000024332)	ENSCHYG00000024310	GLRX5 (ENSCHYG00000024294)	SYNE3 (ENSCHYG00000024117)	CLMN (ENSCHYG00000024002)	DICER1 (ENSCHYG00000023880)	GSC (ENSCHYG00000023856)	ENSCHYG00000023818	ENSCHYG00000023780 #22	ENSCHYG00000023693	SERPINA5 (ENSCHYG00000023635)	SERPINA12 (ENSCHYG00000023498)	ENSCHYG00000023475	SERPINA11 (ENSCHYG00000023440)	SERPINA1 (ENSCHYG00000023389)	SERPINA6 (ENSCHYG00000023370)	SERPINA10 (ENSCHYG00000023333)	PPP4R4 (ENSCHYG00000023072)	ENSCHYG00000023007	ENSCHYG00000022991	ENSCHYG00000022953	DDX24 (ENSCHYG00000022853)	OTUB2 (ENSCHYG00000022809)	CCDC197 (ENSCHYG00000022755)
Percora_a	ANCESTRAL SPECIES	20	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.f #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a #10	ENSGT01030000234551.k.d.b.b.c.a.h ##9	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00940000163541.g	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00950000183000.c.b	ENSGT00940000158135
Siberian musk deer	MODERN SPECIES	1275									NOVA1 (ENSMMSG00000023209) #13	FOXG1 (ENSMMSG00000023196) #16	PRKD1 (ENSMMSG00000023150) #17	G2E3 (ENSMMSG00000023121) #18	SCFD1 (ENSMMSG00000023110) #19	ENSMMSG00000023033 #20	STRN3 (ENSMMSG00000022995) #21	AP4S1 (ENSMMSG00000022976) #22	HECTD1 (ENSMMSG00000022929) #23	ENSMMSG00000022922 ##14	HEATR5A (ENSMMSG00000022882) #24	DTD2 (ENSMMSG00000022862) #25	GPR33 (ENSMMSG00000022855) #26
Bovidae	ANCESTRAL SPECIES	20	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.f #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a #10	ENSGT01030000234551.k.d.b.b.c.a.h.b.a ##9	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00940000163541.g	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00950000183000.c.b	ENSGT00940000158135
Caprinae	ANCESTRAL SPECIES	22	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.c #10	ENSGT01030000234551.k.d.b.a.a.b.i ##9	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a.c #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.f #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499.k #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00940000163541.g	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b
Goat	MODERN SPECIES	13	ENSCHIG00000015005 #9	ENSCHIG00000016245 #10	ENSCHIG00000015715 #9	ENSCHIG00000020332 #10	ENSCHIG00000022005 #11	STXBP6 (ENSCHIG00000018400) #12	ENSCHIG00000026291	NOVA1 (ENSCHIG00000018944) #13	FOXG1 (ENSCHIG00000022539) #16	PRKD1 (ENSCHIG00000017644) #17	ENSCHIG00000019781	G2E3 (ENSCHIG00000025802) #18	SCFD1 (ENSCHIG00000024335) #19	COCH (ENSCHIG00000007305) #20	STRN3 (ENSCHIG00000019005) #21	AP4S1 (ENSCHIG00000016142) #22	HECTD1 (ENSCHIG00000018114) #23	HEATR5A (ENSCHIG00000010796) #24	ENSCHIG00000011637 #25	GPR33 (ENSCHIG00000007857) #26	NUBPL (ENSCHIG00000006710) #27	ARHGAP5 (ENSCHIG00000010874) #29	AKAP6 (ENSCHIG00000024298) #30	NPAS3 (ENSCHIG00000019397) #33	EGLN3 (ENSCHIG00000016948) #34	ENSCHIG00000021678	ENSCHIG00000008804 #36	ENSCHIG00000016213	EAPP (ENSCHIG00000022171)	ENSCHIG00000017907	CFL2 (ENSCHIG00000015758)
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020024767 ##9	ENSOARG00020003344 ##9	ENSOARG00020003394 #9	ENSOARG00020003470 #9	ENSOARG00020003828 #10	ENSOARG00020004153 #12	ENSOARG00020004189 #12	ENSOARG00020004201	NOVA1 (ENSOARG00020004244) #13	FOXG1 (ENSOARG00020004300) #16	PRKD1 (ENSOARG00020004370) #17	G2E3 (ENSOARG00020004595) #18	SCFD1 (ENSOARG00020004656) #19	COCH (ENSOARG00020004770) #20	STRN3 (ENSOARG00020004854) #21	AP4S1 (ENSOARG00020004957) #22	HECTD1 (ENSOARG00020005016) #23	HEATR5A (ENSOARG00020005213) #24	DTD2 (ENSOARG00020005329) #25	GPR33 (ENSOARG00020005349) #26	NUBPL (ENSOARG00020005362) #27	ENSOARG00020005406 #28	ARHGAP5 (ENSOARG00020005438) #29	AKAP6 (ENSOARG00020005604) #30	NPAS3 (ENSOARG00020005668) #33	EGLN3 (ENSOARG00020005770) #34	ENSOARG00020005825 #36	ENSOARG00020005839	SNX6 (ENSOARG00020005948)	CFL2 (ENSOARG00020006245)	BAZ1A (ENSOARG00020006340)
Bovinae	ANCESTRAL SPECIES	19	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.f #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940	ENSGT00950000183000.c.b	ENSGT00940000158135
Bos	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940.gb	ENSGT00950000183000.c.b
Bos_a	ANCESTRAL SPECIES	10	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.b #10	ENSGT01030000234551.k.d.b.a.a.b.i ##9	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a #10	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000154690.p.b	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940.fb.a	ENSGT00940000154940.gb	ENSGT00950000183000.c.b
Domestic yak	MODERN SPECIES	8	ENSBGRG00000005384 ##9	ENSBGRG00000005401 ##9	ENSBGRG00000005455 #9	ENSBGRG00000005616 #10	STXBP6 (ENSBGRG00000005667) #12	NOVA1 (ENSBGRG00000005746) #13	ENSBGRG00000005891	ENSBGRG00000005905	FOXG1 (ENSBGRG00000005921) #16	PRKD1 (ENSBGRG00000006007) #17	G2E3 (ENSBGRG00000006521) #18	SCFD1 (ENSBGRG00000006679) #19	ENSBGRG00000006918	COCH (ENSBGRG00000006941) #20	STRN3 (ENSBGRG00000007105) #21	AP4S1 (ENSBGRG00000007586) #22	HECTD1 (ENSBGRG00000007751) #23	ENSBGRG00000007953	HEATR5A (ENSBGRG00000007992) #24	DTD2 (ENSBGRG00000008143) #25	NUBPL (ENSBGRG00000008223) #27	ENSBGRG00000008307 #28	ENSBGRG00000008358 #28	ARHGAP5 (ENSBGRG00000008406) #29	AKAP6 (ENSBGRG00000008525) #30	NPAS3 (ENSBGRG00000008650) #33	ENSBGRG00000009008	EGLN3 (ENSBGRG00000009029) #34	SPTSSA (ENSBGRG00000009176) #36	EAPP (ENSBGRG00000009269)	CFL2 (ENSBGRG00000009349)
Wild yak	MODERN SPECIES	298														COCH (ENSBMUG00000012618) #20	STRN3 (ENSBMUG00000012562) #21	AP4S1 (ENSBMUG00000012479) #22	HECTD1 (ENSBMUG00000012439) #23	HEATR5A (ENSBMUG00000012373) #24	DTD2 (ENSBMUG00000012325) #25	ENSBMUG00000012283
Bos_b	ANCESTRAL SPECIES	18	ENSGT01030000234551.k.d.b.a.a.b.i ##9	ENSGT01030000234551.k.d.b.a.a.b.j ##9	ENSGT01030000234551.k.d.b.a.a.a.b.a.a #9	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.a #10	ENSGT01030000234551.k.d.b.a.a.a.a.e.b.a.b.a #10	ENSGT01030000234551.k.d.b.a.a.a.b.b.b #11	ENSGT00940000156499 #12	ENSGT00940000155573 #13	ENSGT01100000263480.a.a.b.a.b.a.a.b.a.a.b	ENSGT00940000160678.a #16	ENSGT00950000183024.a.b.a #17	ENSGT00950000182865.b.a.a #18	ENSGT00550000074845 #19	ENSGT00940000159386 #20	ENSGT00950000183095.a.a #21	ENSGT00970000193421.B #22	ENSGT00940000156572 #23	ENSGT01100000263480.a.b.a.a.a.b.b.b.b.b.b.b.b.a.a.b.a.b.a.a.a	ENSGT00390000006205.b #24	ENSGT00940000153431.a.l.b #25	ENSGT01020000230438.B.b.b.a #26	ENSGT00950000183193.B #27	ENSGT00910000147163 #28	ENSGT00940000154553.a.b #29	ENSGT00810000125473.B #30	ENSGT00940000158051 #33	ENSGT00940000158745 #34	ENSGT00390000002766.b.b #36	ENSGT00390000001332	ENSGT00940000154940.gb	ENSGT00950000183000.c.b
Hybrid Bos Indicus	MODERN SPECIES	13	ENSBIXG00005009049 ##9	ENSBIXG00005005146 ##9	ENSBIXG00005001958 #9	ENSBIXG00005001991 #10	GZMB (ENSBIXG00005002071) #11	STXBP6 (ENSBIXG00005002110) #12	NOVA1 (ENSBIXG00005005044) #13	ENSBIXG00005002282	FOXG1 (ENSBIXG00005002315) #16	PRKD1 (ENSBIXG00005028790) #17	G2E3 (ENSBIXG00005028509) #18	SCFD1 (ENSBIXG00005028488) #19	ENSBIXG00005028450	COCH (ENSBIXG00005028431) #20	STRN3 (ENSBIXG00005004875) #21	AP4S1 (ENSBIXG00005028268) #22	ENSBIXG00005028238	HECTD1 (ENSBIXG00005028215) #23	ENSBIXG00005028130	HEATR5A (ENSBIXG00005028101) #24	ENSBIXG00005027995 #25	GPR33 (ENSBIXG00005027980) #26	NUBPL (ENSBIXG00005027931) #27	ENSBIXG00005004787	ENSBIXG00005027817 #28	ARHGAP5 (ENSBIXG00005027783) #29	AKAP6 (ENSBIXG00005004751) #30	ENSBIXG00005027635	NPAS3 (ENSBIXG00005004743) #33	EGLN3 (ENSBIXG00005004670) #34	SPTSSA (ENSBIXG00005027156) #36
Cow	MODERN SPECIES	13	ENSBTAG00000050353 #10	ENSBTAG00000040134 ##9	ENSBTAG00000010828 #9	ENSBTAG00000013055 #10	ENSBTAG00000038080 #10	GZMB (ENSBTAG00000010057) #11	STXBP6 (ENSBTAG00000021291) #12	NOVA1 (ENSBTAG00000002170) #13	ENSBTAG00000031558	FOXG1 (ENSBTAG00000011113) #16	PRKD1 (ENSBTAG00000012789) #17	G2E3 (ENSBTAG00000001617) #18	SCFD1 (ENSBTAG00000017565) #19	COCH (ENSBTAG00000021844) #20	STRN3 (ENSBTAG00000021845) #21	AP4S1 (ENSBTAG00000017201) #22	HECTD1 (ENSBTAG00000032477) #23	HEATR5A (ENSBTAG00000022847) #24	ENSBTAG00000038020 #25	GPR33 (ENSBTAG00000010536) #26	NUBPL (ENSBTAG00000044121) #27	ENSBTAG00000055201 #28	ARHGAP5 (ENSBTAG00000027024) #29	AKAP6 (ENSBTAG00000017719) #30	NPAS3 (ENSBTAG00000004462) #33	EGLN3 (ENSBTAG00000008172) #34	SPTSSA (ENSBTAG00000013981) #36	EAPP (ENSBTAG00000003419)	SNX6 (ENSBTAG00000012873)	CFL2 (ENSBTAG00000015053)	BAZ1A (ENSBTAG00000020164)
American bison	MODERN SPECIES	3159										ENSBBBG00000005060	G2E3 (ENSBBBG00000009177) #18	ENSBBBG00000009180	SCFD1 (ENSBBBG00000019438) #19	COCH (ENSBBBG00000019503) #20	STRN3 (ENSBBBG00000007277) #21	AP4S1 (ENSBBBG00000019582) #22	HECTD1 (ENSBBBG00000019676) #23	HEATR5A (ENSBBBG00000019715) #24	ENSBBBG00000019724 #25	NUBPL (ENSBBBG00000019729) #27	ARHGAP5 (ENSBBBG00000019759) #29	AKAP6 (ENSBBBG00000019789) #30	NPAS3 (ENSBBBG00000007628) #33