Murinae	ANCESTRAL SPECIES	8	ENSGT00940000159468 #7	ENSGT00390000001793 #8	ENSGT00940000162396 #9	ENSGT00940000161652 #10	ENSGT00940000154030.a.b #11	ENSGT00390000013670 #12	ENSGT00940000157701 #13	ENSGT00940000156464 #14	ENSGT00940000156714 #15	ENSGT01030000234564.a.a.a.a.b #16	ENSGT00390000013305.a.a.v #17	ENSGT00390000016845 #18	ENSGT00940000155982 #19	ENSGT00940000157612 #20	ENSGT00440000033827 #21	ENSGT01090000260040.b.b.b.b.a.a #22	ENSGT00940000155443 #23	ENSGT00390000008069 #24	ENSGT00940000155699 #25	ENSGT00390000003990 #26	ENSGT00940000155623 #27	ENSGT01060000248676	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35
Mus	ANCESTRAL SPECIES	10	ENSGT00940000159468 #7	ENSGT00390000001793 #8	ENSGT00940000162396 #9	ENSGT00940000161652 #10	ENSGT00940000154030.a.b #11	ENSGT00390000013670 #12	ENSGT00940000157701 #13	ENSGT00940000156464 #14	ENSGT00940000156714 #15	ENSGT01030000234564.a.a.a.a.b #16	ENSGT00390000013305.a.a.v #17	ENSGT00390000016845 #18	ENSGT00940000155982 #19	ENSGT00940000157612 #20	ENSGT00440000033827 #21	ENSGT01090000260040.b.b.b.b.a.a #22	ENSGT00940000155443 #23	ENSGT00390000008069 #24	ENSGT00940000155699 #25	ENSGT00390000003990 #26	ENSGT00940000155623 #27	ENSGT01060000248676	ENSGT00950000182995.e.a.a.a #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Mus_A	ANCESTRAL SPECIES	17	ENSGT00940000159468 #7	ENSGT00390000001793 #8	ENSGT00940000162396 #9	ENSGT00940000161652 #10	ENSGT00940000154030.a.b #11	ENSGT00390000013670 #12	ENSGT00940000157701 #13	ENSGT00940000156464 #14	ENSGT00940000156714 #15	ENSGT01030000234564.a.a.a.a.b #16	ENSGT00390000013305.a.a.v #17	ENSGT00390000016845 #18	ENSGT00940000155982 #19	ENSGT00940000157612 #20	ENSGT00440000033827 #21	ENSGT01090000260040.b.b.b.b.a.a #22	ENSGT00940000155443 #23	ENSGT00390000008069 #24	ENSGT00940000155699 #25	ENSGT00390000003990 #26	ENSGT00940000155623 #27	ENSGT01060000248676	ENSGT00950000182995.e.a.a.a.e #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.c #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
Ryukyu mouse	MODERN SPECIES	3	Colec11 (MGP_CAROLIEiJ_G0017658) #7	Allc (MGP_CAROLIEiJ_G0017657) #8	MGP_CAROLIEiJ_G0017656 #9	Sox11 (MGP_CAROLIEiJ_G0017655) #10	Cmpk2 (MGP_CAROLIEiJ_G0017654) #11	Rsad2 (MGP_CAROLIEiJ_G0017653) #12	Rnf144a (MGP_CAROLIEiJ_G0017652) #13	MGP_CAROLIEiJ_G0017651 #14	Kidins220 (MGP_CAROLIEiJ_G0017650) #15	Mboat2 (MGP_CAROLIEiJ_G0017649) #16	Rrm2 (MGP_CAROLIEiJ_G0017648) #17	Cys1 (MGP_CAROLIEiJ_G0017647) #18	Klf11 (MGP_CAROLIEiJ_G0017646) #19	Grhl1 (MGP_CAROLIEiJ_G0017645) #20	Taf1b (MGP_CAROLIEiJ_G0017644) #21	Ywhaq (MGP_CAROLIEiJ_G0017643) #22	Adam17 (MGP_CAROLIEiJ_G0017642) #23	Iah1 (MGP_CAROLIEiJ_G0017641) #24	Cpsf3 (MGP_CAROLIEiJ_G0017640) #25	Itgb1bp1 (MGP_CAROLIEiJ_G0017639) #26	Asap2 (MGP_CAROLIEiJ_G0017638) #27	Odc1 (MGP_CAROLIEiJ_G0017637) #28	Nol10 (MGP_CAROLIEiJ_G0017636) #29	Atp6v1c2 (MGP_CAROLIEiJ_G0017635) #30	Pdia6 (MGP_CAROLIEiJ_G0017634) #31	Kcnf1 (MGP_CAROLIEiJ_G0017633) #32	MGP_CAROLIEiJ_G0017632 #33	MGP_CAROLIEiJ_G0017631 #34	Rock2 (MGP_CAROLIEiJ_G0017630) #35	MGP_CAROLIEiJ_G0017629 #36	Greb1 (MGP_CAROLIEiJ_G0017628) #37
Mus_B	ANCESTRAL SPECIES	17	ENSGT00940000159468 #7	ENSGT00390000001793 #8	ENSGT00940000162396 #9	ENSGT00940000161652 #10	ENSGT00940000154030.a.b #11	ENSGT00390000013670 #12	ENSGT00940000157701 #13	ENSGT00940000156464 #14	ENSGT00940000156714 #15	ENSGT01030000234564.a.a.a.a.b #16	ENSGT00390000013305.a.a.v #17	ENSGT00390000016845 #18	ENSGT00940000155982 #19	ENSGT00940000157612 #20	ENSGT00440000033827 #21	ENSGT01090000260040.b.b.b.b.a.a #22	ENSGT00940000155443 #23	ENSGT00390000008069 #24	ENSGT00940000155699 #25	ENSGT00390000003990 #26	ENSGT00940000155623 #27	ENSGT01060000248676	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a.e #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.c #34	ENSGT01030000234517.D #35
Mouse	MODERN SPECIES	3	Allc (ENSMUSG00000020636) #8	Dcdc2c (ENSMUSG00000020633) #9	Sox11 (ENSMUSG00000063632) #10	Cmpk2 (ENSMUSG00000020638) #11	Rsad2 (ENSMUSG00000020641) #12	Rnf144a (ENSMUSG00000020642) #13	Id2 (ENSMUSG00000020644) #14	Kidins220 (ENSMUSG00000036333) #15	Mboat2 (ENSMUSG00000020646) #16	Rrm2 (ENSMUSG00000020649) #17	Cys1 (ENSMUSG00000062563) #18	Klf11 (ENSMUSG00000020653) #19	Grhl1 (ENSMUSG00000020656) #20	Taf1b (ENSMUSG00000059669) #21	9030624G23Rik (ENSMUSG00000073158)	Ywhaq (ENSMUSG00000076432) #22	Adam17 (ENSMUSG00000052593) #23	Iah1 (ENSMUSG00000062054) #24	Cpsf3 (ENSMUSG00000054309) #25	Itgb1bp1 (ENSMUSG00000062352) #26	Asap2 (ENSMUSG00000052632) #27	Gm21863 (ENSMUSG00000095470)	5730507C01Rik (ENSMUSG00000073197)	Hpcal1 (ENSMUSG00000071379)	Odc1 (ENSMUSG00000011179) #28	Nol10 (ENSMUSG00000061458) #29	Atp6v1c2 (ENSMUSG00000020566) #30	Pdia6 (ENSMUSG00000020571) #31	Kcnf1 (ENSMUSG00000051726) #32	2410004P03Rik (ENSMUSG00000071398)	Pqlc3 (ENSMUSG00000045679) #34
Mus_C	ANCESTRAL SPECIES	11	ENSGT00940000159468 #7	ENSGT00390000001793 #8	ENSGT00940000162396 #9	ENSGT00940000161652 #10	ENSGT00940000154030.a.b #11	ENSGT00390000013670 #12	ENSGT00940000157701 #13	ENSGT00940000156464 #14	ENSGT00940000156714 #15	ENSGT01030000234564.a.a.a.a.b #16	ENSGT00390000013305.a.a.v #17	ENSGT00390000016845 #18	ENSGT00940000155982 #19	ENSGT00940000157612 #20	ENSGT00440000033827 #21	ENSGT01090000260040.b.b.b.b.a.a #22	ENSGT00940000155443 #23	ENSGT00390000008069 #24	ENSGT00940000155699 #25	ENSGT00390000003990 #26	ENSGT00940000155623 #27	ENSGT00940000154645.A	ENSGT00950000182995.e.a.a.a.e #28	ENSGT00390000007900 #29	ENSGT00390000004263.b #30	ENSGT00940000155646 #31	ENSGT00940000160213 #32	ENSGT00940000154459.B #33	ENSGT00940000153916.B.c #34	ENSGT01030000234517.D #35	ENSGT00940000155734 #36
spretus	MODERN SPECIES	3	Allc (MGP_SPRETEiJ_G0018499) #8	MGP_SPRETEiJ_G0018498 #9	Sox11 (MGP_SPRETEiJ_G0018497) #10	Cmpk2 (MGP_SPRETEiJ_G0018496) #11	Rsad2 (MGP_SPRETEiJ_G0018495) #12	Rnf144a (MGP_SPRETEiJ_G0018494) #13	MGP_SPRETEiJ_G0018493 #14	Kidins220 (MGP_SPRETEiJ_G0018492) #15	Mboat2 (MGP_SPRETEiJ_G0018491) #16	Rrm2 (MGP_SPRETEiJ_G0018490) #17	Cys1 (MGP_SPRETEiJ_G0018489) #18	Klf11 (MGP_SPRETEiJ_G0018488) #19	Grhl1 (MGP_SPRETEiJ_G0018487) #20	MGP_SPRETEiJ_G0018486	Taf1b (MGP_SPRETEiJ_G0018485) #21	Ywhaq (MGP_SPRETEiJ_G0018484) #22	Adam17 (MGP_SPRETEiJ_G0018483) #23	Iah1 (MGP_SPRETEiJ_G0018482) #24	Cpsf3 (MGP_SPRETEiJ_G0018481) #25	Itgb1bp1 (MGP_SPRETEiJ_G0018480) #26	Asap2 (MGP_SPRETEiJ_G0018479) #27	Nol10 (MGP_SPRETEiJ_G0018478) #29	Atp6v1c2 (MGP_SPRETEiJ_G0018477) #30	Pdia6 (MGP_SPRETEiJ_G0018476) #31	Kcnf1 (MGP_SPRETEiJ_G0018475) #32	2410004P03Rik (MGP_SPRETEiJ_G0018474)	MGP_SPRETEiJ_G0018473 #34	Rock2 (MGP_SPRETEiJ_G0018472) #35	E2f6 (MGP_SPRETEiJ_G0018471) #36	Greb1 (MGP_SPRETEiJ_G0018470) #37	Ntsr2 (MGP_SPRETEiJ_G0018469)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	1019																ENSMSIG00000000706 #22
Steppe mouse	MODERN SPECIES	2460																Ywhaq (ENSMSIG00000022246) #22	Adam17 (ENSMSIG00000022289) #23	Iah1 (ENSMSIG00000022381) #24	Cpsf3 (ENSMSIG00000022405) #25	Itgb1bp1 (ENSMSIG00000022470) #26	Asap2 (ENSMSIG00000022503) #27
Shrew mouse	MODERN SPECIES	20	Colec11 (MGP_PahariEiJ_G0029416) #7	Allc (MGP_PahariEiJ_G0029415) #8	MGP_PahariEiJ_G0029414 #9	Sox11 (MGP_PahariEiJ_G0029413) #10	Cmpk2 (MGP_PahariEiJ_G0029412) #11	Rsad2 (MGP_PahariEiJ_G0029411) #12	Rnf144a (MGP_PahariEiJ_G0029410) #13	MGP_PahariEiJ_G0029409 #14	Kidins220 (MGP_PahariEiJ_G0029408) #15	Mboat2 (MGP_PahariEiJ_G0029407) #16	MGP_PahariEiJ_G0029405 #17	Cys1 (MGP_PahariEiJ_G0029404) #18	Klf11 (MGP_PahariEiJ_G0029403) #19	MGP_PahariEiJ_G0029402 #20	MGP_PahariEiJ_G0029401 #21	MGP_PahariEiJ_G0029400 #22	Adam17 (MGP_PahariEiJ_G0029399) #23	Iah1 (MGP_PahariEiJ_G0029398) #24	Cpsf3 (MGP_PahariEiJ_G0029397) #25	Itgb1bp1 (MGP_PahariEiJ_G0029396) #26	Asap2 (MGP_PahariEiJ_G0029395) #27	Odc1 (MGP_PahariEiJ_G0029394) #28	Nol10 (MGP_PahariEiJ_G0029393) #29	Atp6v1c2 (MGP_PahariEiJ_G0029392) #30	Pdia6 (MGP_PahariEiJ_G0029391) #31	Kcnf1 (MGP_PahariEiJ_G0029390) #32	MGP_PahariEiJ_G0029389 #33	Pqlc3 (MGP_PahariEiJ_G0029388) #34	Rock2 (MGP_PahariEiJ_G0029387) #35	MGP_PahariEiJ_G0029386	E2f6 (MGP_PahariEiJ_G0029385) #36
Rat	MODERN SPECIES	16	ENSRNOG00000068283	Sox11 (ENSRNOG00000030034) #10	Cmpk2 (ENSRNOG00000007690) #11	Rsad2 (ENSRNOG00000007539) #12	Rnf144a (ENSRNOG00000007370) #13	Id2 (ENSRNOG00000007237) #14	LOC120093241 (ENSRNOG00000062523)	Kidins220 (ENSRNOG00000023176) #15	Mboat2 (ENSRNOG00000061050) #16	Rrm2 (ENSRNOG00000054286) #17	Cys1 (ENSRNOG00000058891) #18	Klf11 (ENSRNOG00000054259) #19	Grhl1 (ENSRNOG00000054989) #20	Rbm34-ps1 (ENSRNOG00000065550)	Taf1b (ENSRNOG00000061415) #21	Ywhaq (ENSRNOG00000051650) #22	Adam17 (ENSRNOG00000060694) #23	Iah1 (ENSRNOG00000060853) #24	Cpsf3 (ENSRNOG00000052418) #25	Itgb1bp1 (ENSRNOG00000059402) #26	Asap2 (ENSRNOG00000061519) #27	Hpcal1 (ENSRNOG00000005492)	LOC120093238 (ENSRNOG00000032523)	Odc1 (ENSRNOG00000005424) #28	AABR07063703.1 (ENSRNOG00000046279)	Nol10 (ENSRNOG00000005344) #29	Atp6v1c2 (ENSRNOG00000050553) #30	Pdia6 (ENSRNOG00000050197) #31	Kcnf1 (ENSRNOG00000024310) #32	C6h2orf50 (ENSRNOG00000024338) #33	Slc66a3 (ENSRNOG00000005126) #34