Vertebrata	ANCESTRAL SPECIES	706																ENSGT00950000183163 #22	ENSGT00940000155886
Gnathostomata	DUPLICATION
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	379															ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT01030000235168	ENSGT00390000001737 #28
Euteleostomi	ANCESTRAL SPECIES	146															ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00990000203803	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34
Sarcopterygii	ANCESTRAL SPECIES	53	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00990000203803	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Tetrapoda	ANCESTRAL SPECIES	60	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00990000203803	ENSGT00390000015257 #32	ENSGT00940000156553 #33
Amniota	ANCESTRAL SPECIES	39	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34
Mammalia	ANCESTRAL SPECIES	19	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Theria	ANCESTRAL SPECIES	36	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Eutheria	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Primates	ANCESTRAL SPECIES	4	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.e #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Bushbaby	MODERN SPECIES	140	KIAA0319L (ENSOGAG00000002092) #7	NCDN (ENSOGAG00000034366) #8	TFAP2E (ENSOGAG00000029197) #9	PSMB2 (ENSOGAG00000002097) #10	C1orf216 (ENSOGAG00000004230) #11	CLSPN (ENSOGAG00000004231) #12	ENSOGAG00000032752 #13	ENSOGAG00000004233 #14	AGO1 (ENSOGAG00000010279) #15	AGO3 (ENSOGAG00000010290) #16	TEKT2 (ENSOGAG00000032145) #17	ADPRS (ENSOGAG00000026312) #18	COL8A2 (ENSOGAG00000034217) #19	TRAPPC3 (ENSOGAG00000029810) #20	MAP7D1 (ENSOGAG00000013476) #21	THRAP3 (ENSOGAG00000002648) #22	ENSOGAG00000028592 #23	EVA1B (ENSOGAG00000025550) #24	STK40 (ENSOGAG00000002651) #25	LSM10 (ENSOGAG00000002653) #26	OSCP1 (ENSOGAG00000002654) #27	ENSOGAG00000002656 #28	CSF3R (ENSOGAG00000002660) #29	GRIK3 (ENSOGAG00000002138) #30	ZC3H12A (ENSOGAG00000030940) #31	MEAF6 (ENSOGAG00000006773) #32	SNIP1 (ENSOGAG00000008634) #33	DNALI1 (ENSOGAG00000008639) #34	GNL2 (ENSOGAG00000008643) #35	RSPO1 (ENSOGAG00000008648) #36	C1orf109 (ENSOGAG00000008650) #37
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.e #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Lemuriformes_a	ANCESTRAL SPECIES	58	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.e #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30
Coquerels sifaka	MODERN SPECIES	257	KIAA0319L (ENSPCOG00000025777) #7	NCDN (ENSPCOG00000023262) #8	TFAP2E (ENSPCOG00000017621) #9	PSMB2 (ENSPCOG00000024983) #10	ENSPCOG00000007974	CLSPN (ENSPCOG00000017966) #12	AGO4 (ENSPCOG00000015935) #14	AGO1 (ENSPCOG00000022061) #15	AGO3 (ENSPCOG00000028390) #16	TEKT2 (ENSPCOG00000026680) #17	ADPRS (ENSPCOG00000015295) #18	COL8A2 (ENSPCOG00000018858) #19	TRAPPC3 (ENSPCOG00000021901) #20	MAP7D1 (ENSPCOG00000024366) #21	ENSPCOG00000028655	THRAP3 (ENSPCOG00000027521) #22	SH3D21 (ENSPCOG00000013355) #23	EVA1B (ENSPCOG00000022411) #24	STK40 (ENSPCOG00000024517) #25	OSCP1 (ENSPCOG00000021088) #27	MRPS15 (ENSPCOG00000014731) #28	CSF3R (ENSPCOG00000019162) #29	GRIK3 (ENSPCOG00000025879) #30
Greater bamboo lemur	MODERN SPECIES	1104							AGO4 (ENSPSMG00000008413) #14	AGO1 (ENSPSMG00000008155) #15	AGO3 (ENSPSMG00000007852) #16	ENSPSMG00000007627	TEKT2 (ENSPSMG00000007624) #17	ADPRS (ENSPSMG00000007612) #18	COL8A2 (ENSPSMG00000007598) #19	TRAPPC3 (ENSPSMG00000007582) #20	MAP7D1 (ENSPSMG00000007504) #21	THRAP3 (ENSPSMG00000007350) #22	SH3D21 (ENSPSMG00000007326) #23	EVA1B (ENSPSMG00000007322) #24	STK40 (ENSPSMG00000007309) #25	LSM10 (ENSPSMG00000007286) #26	OSCP1 (ENSPSMG00000007256) #27	MRPS15 (ENSPSMG00000007209) #28	CSF3R (ENSPSMG00000007169) #29	GRIK3 (ENSPSMG00000007001) #30
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	11	KIAA0319L (ENSMICG00000006428) #7	ENSMICG00000035693	NCDN (ENSMICG00000006440) #8	TFAP2E (ENSMICG00000046802) #9	PSMB2 (ENSMICG00000006460) #10	CLSPN (ENSMICG00000005691) #12	AGO4 (ENSMICG00000033507) #14	ENSMICG00000044276	AGO1 (ENSMICG00000016147) #15	AGO3 (ENSMICG00000016158) #16	TEKT2 (ENSMICG00000016171) #17	ADPRS (ENSMICG00000016186) #18	COL8A2 (ENSMICG00000033642) #19	TRAPPC3 (ENSMICG00000016250) #20	MAP7D1 (ENSMICG00000016257) #21	THRAP3 (ENSMICG00000007920) #22	SH3D21 (ENSMICG00000027388) #23	EVA1B (ENSMICG00000044326) #24	STK40 (ENSMICG00000007931) #25	OSCP1 (ENSMICG00000007944) #27	MRPS15 (ENSMICG00000047526) #28	CSF3R (ENSMICG00000007970) #29	GRIK3 (ENSMICG00000016437) #30	ZC3H12A (ENSMICG00000004790) #31	MEAF6 (ENSMICG00000030115) #32	SNIP1 (ENSMICG00000044466) #33	DNALI1 (ENSMICG00000011878) #34	ENSMICG00000011884	RSPO1 (ENSMICG00000011909) #36	C1orf109 (ENSMICG00000030638) #37	ENSMICG00000045747
Mouse lemur	MODERN SPECIES	169	ENSMICG00000035221	ENSMICG00000026518	ENSMICG00000041675	ENSMICG00000037213	ENSMICG00000015146	PPP2R3B (ENSMICG00000030474)	GTPBP6 (ENSMICG00000044435)	PLCXD1 (ENSMICG00000045160)	SHOX (ENSMICG00000014601)	ENSMICG00000004731	ENSMICG00000033357	ENSMICG00000027916	ENSMICG00000042557	TMEM47 (ENSMICG00000044159)	ENSMICG00000042840	ENSMICG00000042555 #22	ENSMICG00000032834	DMD (ENSMICG00000028112)	ENSMICG00000047999	TAB3 (ENSMICG00000032994)	ENSMICG00000031852	ENSMICG00000005238	ENSMICG00000034710	NR0B1 (ENSMICG00000047871)	ENSMICG00000032961	ENSMICG00000013694	IL1RAPL1 (ENSMICG00000009756)	ENSMICG00000043208	ENSMICG00000036346	ENSMICG00000030568	ENSMICG00000029119
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	4773											TEKT2 (ENSTSYG00000000204) #17	ADPRHL2 (ENSTSYG00000011188) #18	COL8A2 (ENSTSYG00000035637) #19	TRAPPC3 (ENSTSYG00000000393) #20	MAP7D1 (ENSTSYG00000001484) #21	THRAP3 (ENSTSYG00000012214) #22	SH3D21 (ENSTSYG00000035793) #23	STK40 (ENSTSYG00000005872) #25	OSCP1 (ENSTSYG00000010954) #27	CSF3R (ENSTSYG00000007230) #29	GRIK3 (ENSTSYG00000000594) #30
Tarsier	MODERN SPECIES	3795																ENSTSYG00000011370 #22
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Gorilla	MODERN SPECIES		KIAA0319L (ENSGGOG00000012068) #7	NCDN (ENSGGOG00000009754) #8	TFAP2E (ENSGGOG00000009762) #9	PSMB2 (ENSGGOG00000009771) #10	C1orf216 (ENSGGOG00000043887) #11	CLSPN (ENSGGOG00000005981) #12	AGO4 (ENSGGOG00000036532) #14	AGO1 (ENSGGOG00000003316) #15	AGO3 (ENSGGOG00000036711) #16	ENSGGOG00000043836	TEKT2 (ENSGGOG00000003766) #17	ADPRS (ENSGGOG00000003770) #18	COL8A2 (ENSGGOG00000003772) #19	TRAPPC3 (ENSGGOG00000004752) #20	MAP7D1 (ENSGGOG00000003219) #21	THRAP3 (ENSGGOG00000006917) #22	SH3D21 (ENSGGOG00000006931) #23	EVA1B (ENSGGOG00000006937) #24	STK40 (ENSGGOG00000011597) #25	LSM10 (ENSGGOG00000003556) #26	OSCP1 (ENSGGOG00000007041) #27	MRPS15 (ENSGGOG00000013565) #28	CSF3R (ENSGGOG00000013573) #29	GRIK3 (ENSGGOG00000011315) #30	ZC3H12A (ENSGGOG00000009268) #31	MEAF6 (ENSGGOG00000017191) #32	SNIP1 (ENSGGOG00000022697) #33	ENSGGOG00000042544	DNALI1 (ENSGGOG00000007698) #34	GNL2 (ENSGGOG00000007704) #35	RSPO1 (ENSGGOG00000007712) #36
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Human	MODERN SPECIES		ZMYM4 (ENSG00000146463)	KIAA0319L (ENSG00000142687) #7	NCDN (ENSG00000020129) #8	TFAP2E (ENSG00000116819) #9	PSMB2 (ENSG00000126067) #10	C1orf216 (ENSG00000142686) #11	CLSPN (ENSG00000092853) #12	AGO4 (ENSG00000134698) #14	AGO1 (ENSG00000092847) #15	AGO3 (ENSG00000126070) #16	TEKT2 (ENSG00000092850) #17	ADPRS (ENSG00000116863) #18	COL8A2 (ENSG00000171812) #19	TRAPPC3 (ENSG00000054116) #20	MAP7D1 (ENSG00000116871) #21	THRAP3 (ENSG00000054118) #22	SH3D21 (ENSG00000214193) #23	EVA1B (ENSG00000142694) #24	STK40 (ENSG00000196182) #25	LSM10 (ENSG00000181817) #26	OSCP1 (ENSG00000116885) #27	MRPS15 (ENSG00000116898) #28	CSF3R (ENSG00000119535) #29	GRIK3 (ENSG00000163873) #30	ZC3H12A (ENSG00000163874) #31	MEAF6 (ENSG00000163875) #32	SNIP1 (ENSG00000163877) #33	DNALI1 (ENSG00000163879) #34	GNL2 (ENSG00000134697) #35	RSPO1 (ENSG00000169218) #36	C1orf109 (ENSG00000116922) #37
Pan	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Bonobo	MODERN SPECIES		ENSPPAG00000043691	KIAA0319L (ENSPPAG00000033357) #7	NCDN (ENSPPAG00000040334) #8	TFAP2E (ENSPPAG00000039587) #9	PSMB2 (ENSPPAG00000043554) #10	C1orf216 (ENSPPAG00000004841) #11	CLSPN (ENSPPAG00000029163) #12	AGO4 (ENSPPAG00000031752) #14	AGO1 (ENSPPAG00000034838) #15	AGO3 (ENSPPAG00000031959) #16	TEKT2 (ENSPPAG00000032256) #17	ADPRS (ENSPPAG00000041931) #18	COL8A2 (ENSPPAG00000031750) #19	TRAPPC3 (ENSPPAG00000041117) #20	MAP7D1 (ENSPPAG00000039211) #21	THRAP3 (ENSPPAG00000028961) #22	SH3D21 (ENSPPAG00000028393) #23	EVA1B (ENSPPAG00000028458) #24	STK40 (ENSPPAG00000038002) #25	LSM10 (ENSPPAG00000023465) #26	OSCP1 (ENSPPAG00000032111) #27	MRPS15 (ENSPPAG00000025884) #28	CSF3R (ENSPPAG00000037401) #29	GRIK3 (ENSPPAG00000029669) #30	ZC3H12A (ENSPPAG00000041054) #31	MEAF6 (ENSPPAG00000028352) #32	SNIP1 (ENSPPAG00000039865) #33	ENSPPAG00000001093	DNALI1 (ENSPPAG00000032274) #34	GNL2 (ENSPPAG00000001559) #35	RSPO1 (ENSPPAG00000042330) #36
Chimpanzee	MODERN SPECIES		ZMYM4 (ENSPTRG00000000519)	KIAA0319L (ENSPTRG00000000521) #7	NCDN (ENSPTRG00000000522) #8	TFAP2E (ENSPTRG00000000523) #9	PSMB2 (ENSPTRG00000000524) #10	C1H1orf216 (ENSPTRG00000052130) #11	CLSPN (ENSPTRG00000000526) #12	AGO4 (ENSPTRG00000000527) #14	AGO1 (ENSPTRG00000000528) #15	AGO3 (ENSPTRG00000000529) #16	TEKT2 (ENSPTRG00000024371) #17	ADPRS (ENSPTRG00000000531) #18	COL8A2 (ENSPTRG00000000532) #19	TRAPPC3 (ENSPTRG00000000533) #20	MAP7D1 (ENSPTRG00000000534) #21	THRAP3 (ENSPTRG00000000535) #22	SH3D21 (ENSPTRG00000034515) #23	EVA1B (ENSPTRG00000000537) #24	STK40 (ENSPTRG00000000538) #25	LSM10 (ENSPTRG00000000539) #26	OSCP1 (ENSPTRG00000000540) #27	MRPS15 (ENSPTRG00000000541) #28	CSF3R (ENSPTRG00000000542) #29	GRIK3 (ENSPTRG00000000543) #30	ZC3H12A (ENSPTRG00000000544) #31	MEAF6 (ENSPTRG00000047980) #32	SNIP1 (ENSPTRG00000000547) #33	ENSPTRG00000045895	DNALI1 (ENSPTRG00000000548) #34	GNL2 (ENSPTRG00000000549) #35	RSPO1 (ENSPTRG00000000550) #36
Orangutan	MODERN SPECIES		KIAA0319L (ENSPPYG00000001558) #7	NCDN (ENSPPYG00000001557) #8	TFAP2E (ENSPPYG00000001556) #9	PSMB2 (ENSPPYG00000001555) #10	C1orf216 (ENSPPYG00000001554) #11	CLSPN (ENSPPYG00000001553) #12	AGO4 (ENSPPYG00000001552) #14	AGO1 (ENSPPYG00000001551) #15	AGO3 (ENSPPYG00000001550) #16	ENSPPYG00000040273	TEKT2 (ENSPPYG00000001549) #17	ADPRS (ENSPPYG00000001548) #18	COL8A2 (ENSPPYG00000001547) #19	TRAPPC3 (ENSPPYG00000001546) #20	MAP7D1 (ENSPPYG00000001545) #21	THRAP3 (ENSPPYG00000001544) #22	SH3D21 (ENSPPYG00000001543) #23	EVA1B (ENSPPYG00000030005) #24	STK40 (ENSPPYG00000001540) #25	LSM10 (ENSPPYG00000001539) #26	OSCP1 (ENSPPYG00000001538) #27	MRPS15 (ENSPPYG00000001537) #28	CSF3R (ENSPPYG00000001536) #29	GRIK3 (ENSPPYG00000001535) #30	ZC3H12A (ENSPPYG00000001534) #31	MEAF6 (ENSPPYG00000034713) #32	SNIP1 (ENSPPYG00000001532) #33	ENSPPYG00000001531	DNALI1 (ENSPPYG00000001530) #34	GNL2 (ENSPPYG00000001529) #35	RSPO1 (ENSPPYG00000001528) #36
Gibbon	MODERN SPECIES	2	ENSNLEG00000031618	KIAA0319L (ENSNLEG00000011001) #7	NCDN (ENSNLEG00000011043) #8	TFAP2E (ENSNLEG00000011088) #9	PSMB2 (ENSNLEG00000034792) #10	C1orf216 (ENSNLEG00000035826) #11	CLSPN (ENSNLEG00000011110) #12	AGO4 (ENSNLEG00000011125) #14	AGO1 (ENSNLEG00000011181) #15	AGO3 (ENSNLEG00000027092) #16	TEKT2 (ENSNLEG00000011235) #17	ADPRS (ENSNLEG00000011265) #18	ENSNLEG00000011300 #19	TRAPPC3 (ENSNLEG00000031818) #20	ENSNLEG00000011317 #21	THRAP3 (ENSNLEG00000011359) #22	SH3D21 (ENSNLEG00000011391) #23	EVA1B (ENSNLEG00000030121) #24	STK40 (ENSNLEG00000011406) #25	LSM10 (ENSNLEG00000033754) #26	OSCP1 (ENSNLEG00000011442) #27	MRPS15 (ENSNLEG00000030022) #28	CSF3R (ENSNLEG00000011482) #29	GRIK3 (ENSNLEG00000011524) #30	ZC3H12A (ENSNLEG00000011545) #31	MEAF6 (ENSNLEG00000011546) #32	SNIP1 (ENSNLEG00000011577) #33	DNALI1 (ENSNLEG00000011584) #34	GNL2 (ENSNLEG00000011599) #35	RSPO1 (ENSNLEG00000011628) #36	ENSNLEG00000031719 #37
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Rhinopithecus	ANCESTRAL SPECIES	37	ENSGT00390000015109	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29
Golden snub-nosed monkey	MODERN SPECIES	880	ENSRROG00000033752	NCDN (ENSRROG00000042808) #8	TFAP2E (ENSRROG00000042239) #9	PSMB2 (ENSRROG00000029102) #10	C1orf216 (ENSRROG00000023698) #11	CLSPN (ENSRROG00000030857) #12	AGO4 (ENSRROG00000035783) #14	AGO1 (ENSRROG00000044469) #15	AGO3 (ENSRROG00000042180) #16	ENSRROG00000027570	TEKT2 (ENSRROG00000039414) #17	ADPRS (ENSRROG00000030199) #18	COL8A2 (ENSRROG00000030627) #19	TRAPPC3 (ENSRROG00000034420) #20	MAP7D1 (ENSRROG00000045698) #21	THRAP3 (ENSRROG00000028592) #22	SH3D21 (ENSRROG00000042801) #23	EVA1B (ENSRROG00000034651) #24	STK40 (ENSRROG00000025639) #25	LSM10 (ENSRROG00000011414) #26	OSCP1 (ENSRROG00000032439) #27	MRPS15 (ENSRROG00000045410) #28	CSF3R (ENSRROG00000040755) #29	IQCF3 (ENSRROG00000035667)	IQCF2 (ENSRROG00000042169)	IQCF5 (ENSRROG00000011279)	IQCF1 (ENSRROG00000037019)
Black snub-nosed monkey	MODERN SPECIES	766	ENSRBIG00000041273	NCDN (ENSRBIG00000023812) #8	TFAP2E (ENSRBIG00000038962) #9	PSMB2 (ENSRBIG00000034620) #10	C1orf216 (ENSRBIG00000010891) #11	CLSPN (ENSRBIG00000030748) #12	AGO4 (ENSRBIG00000040185) #14	AGO1 (ENSRBIG00000032611) #15	AGO3 (ENSRBIG00000043774) #16	ENSRBIG00000006280	TEKT2 (ENSRBIG00000044673) #17	ADPRS (ENSRBIG00000004132) #18	COL8A2 (ENSRBIG00000043182) #19	TRAPPC3 (ENSRBIG00000043692) #20	MAP7D1 (ENSRBIG00000032601) #21	THRAP3 (ENSRBIG00000031284) #22	SH3D21 (ENSRBIG00000031442) #23	EVA1B (ENSRBIG00000035344) #24	STK40 (ENSRBIG00000036383) #25	LSM10 (ENSRBIG00000001561) #26	OSCP1 (ENSRBIG00000032588) #27	MRPS15 (ENSRBIG00000038467) #28	CSF3R (ENSRBIG00000036474) #29
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.d #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Vervet Monkey	MODERN SPECIES	12	NCDN (ENSCSAG00000001085) #8	TFAP2E (ENSCSAG00000001086) #9	PSMB2 (ENSCSAG00000001087) #10	C1orf216 (ENSCSAG00000000132) #11	ENSCSAG00000001088 #12	ENSCSAG00000001089 #12	AGO4 (ENSCSAG00000001090) #14	AGO1 (ENSCSAG00000001091) #15	AGO3 (ENSCSAG00000001092) #16	ENSCSAG00000000133	TEKT2 (ENSCSAG00000001093) #17	ADPRS (ENSCSAG00000001094) #18	COL8A2 (ENSCSAG00000001095) #19	TRAPPC3 (ENSCSAG00000001096) #20	MAP7D1 (ENSCSAG00000001097) #21	THRAP3 (ENSCSAG00000001098) #22	SH3D21 (ENSCSAG00000001100) #23	EVA1B (ENSCSAG00000001099) #24	STK40 (ENSCSAG00000001101) #25	LSM10 (ENSCSAG00000000134) #26	OSCP1 (ENSCSAG00000001102) #27	MRPS15 (ENSCSAG00000001103) #28	CSF3R (ENSCSAG00000001104) #29	GRIK3 (ENSCSAG00000001105) #30	ZC3H12A (ENSCSAG00000001106) #31	MEAF6 (ENSCSAG00000001107) #32	SNIP1 (ENSCSAG00000001108) #33	DNALI1 (ENSCSAG00000001109) #34	GNL2 (ENSCSAG00000001110) #35	RSPO1 (ENSCSAG00000001111) #36	C1orf109 (ENSCSAG00000001112) #37
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.d #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.d #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Macaca	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.d #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.c #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.c.b #14	ENSGT00940000158729.c.a #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.d #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Rhesus	MODERN SPECIES		NCDN (ENSMMUG00000019812) #8	TFAP2E (ENSMMUG00000019815) #9	PSMB2 (ENSMMUG00000013090) #10	C1H1orf216 (ENSMMUG00000059270) #11	CLSPN (ENSMMUG00000010961) #12	ENSMMUG00000053265	ENSMMUG00000050423	AGO4 (ENSMMUG00000003343) #14	AGO1 (ENSMMUG00000006251) #15	AGO3 (ENSMMUG00000006252) #16	TEKT2 (ENSMMUG00000012028) #17	ADPRS (ENSMMUG00000050632) #18	COL8A2 (ENSMMUG00000012031) #19	TRAPPC3 (ENSMMUG00000022499) #20	MAP7D1 (ENSMMUG00000022500) #21	THRAP3 (ENSMMUG00000014622) #22	SH3D21 (ENSMMUG00000011688) #23	EVA1B (ENSMMUG00000057604) #24	STK40 (ENSMMUG00000016212) #25	LSM10 (ENSMMUG00000017338) #26	OSCP1 (ENSMMUG00000020432) #27	MRPS15 (ENSMMUG00000020433) #28	CSF3R (ENSMMUG00000020434) #29	ENSMMUG00000053885	GRIK3 (ENSMMUG00000009679) #30	ZC3H12A (ENSMMUG00000010323) #31	MEAF6 (ENSMMUG00000010328) #32	SNIP1 (ENSMMUG00000059855) #33	DNALI1 (ENSMMUG00000008418) #34	GNL2 (ENSMMUG00000008419) #35	RSPO1 (ENSMMUG00000008420) #36
Crab-eating macaque	MODERN SPECIES		KIAA0319L (ENSMFAG00000003546) #7	TFAP2E (ENSMFAG00000036191) #9	NCDN (ENSMFAG00000038902) #8	PSMB2 (ENSMFAG00000002319) #10	C1orf216 (ENSMFAG00000005466) #11	CLSPN (ENSMFAG00000021652) #12	ENSMFAG00000050764 #14	ENSMFAG00000035543 #14	ENSMFAG00000055085	AGO1 (ENSMFAG00000002846) #15	ENSMFAG00000004521	TEKT2 (ENSMFAG00000003542) #17	ADPRS (ENSMFAG00000034318) #18	COL8A2 (ENSMFAG00000048490) #19	TRAPPC3 (ENSMFAG00000038169) #20	THRAP3 (ENSMFAG00000040144) #22	SH3D21 (ENSMFAG00000036528) #23	EVA1B (ENSMFAG00000053220) #24	STK40 (ENSMFAG00000000703) #25	LSM10 (ENSMFAG00000061237) #26	OSCP1 (ENSMFAG00000043477) #27	ENSMFAG00000038082 #28	CSF3R (ENSMFAG00000032558) #29	GRIK3 (ENSMFAG00000002477) #30	ENSMFAG00000052566	ZC3H12A (ENSMFAG00000032647) #31	SNIP1 (ENSMFAG00000040288) #33	DNALI1 (ENSMFAG00000038046) #34	GNL2 (ENSMFAG00000039033) #35	RSPO1 (ENSMFAG00000043851) #36	C1orf109 (ENSMFAG00000063901) #37
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	217	ENSMNEG00000042114	NCDN (ENSMNEG00000036209) #8	TFAP2E (ENSMNEG00000026563) #9	PSMB2 (ENSMNEG00000042680) #10	C1orf216 (ENSMNEG00000011640) #11	CLSPN (ENSMNEG00000031665) #12	AGO4 (ENSMNEG00000037723) #14	AGO1 (ENSMNEG00000028881) #15	AGO3 (ENSMNEG00000039518) #16	ENSMNEG00000022567	TEKT2 (ENSMNEG00000034182) #17	ADPRS (ENSMNEG00000038272) #18	COL8A2 (ENSMNEG00000043231) #19	TRAPPC3 (ENSMNEG00000014589) #20	MAP7D1 (ENSMNEG00000035413) #21	THRAP3 (ENSMNEG00000018987) #22	SH3D21 (ENSMNEG00000043158) #23	EVA1B (ENSMNEG00000041849) #24	STK40 (ENSMNEG00000038686) #25	LSM10 (ENSMNEG00000020023) #26	OSCP1 (ENSMNEG00000043487) #27	MRPS15 (ENSMNEG00000042543) #28	CSF3R (ENSMNEG00000033813) #29	GRIK3 (ENSMNEG00000035057) #30	ZC3H12A (ENSMNEG00000040453) #31	MEAF6 (ENSMNEG00000034129) #32	SNIP1 (ENSMNEG00000004331) #33	DNALI1 (ENSMNEG00000035462) #34	GNL2 (ENSMNEG00000043438) #35	RSPO1 (ENSMNEG00000034664) #36	C1orf109 (ENSMNEG00000039182) #37
Pig-tailed macaque	MODERN SPECIES	467													RBMS3 (ENSMNEG00000035839)	TGFBR2 (ENSMNEG00000041064)	GADL1 (ENSMNEG00000040498)	ENSMNEG00000042630 #22	STT3B (ENSMNEG00000043111)	OSBPL10 (ENSMNEG00000028144)	GPD1L (ENSMNEG00000036490)	ENSMNEG00000030537	CMTM8 (ENSMNEG00000042143)	CMTM7 (ENSMNEG00000045324)	CMTM6 (ENSMNEG00000035614)	DYNC1LI1 (ENSMNEG00000031282)	ENSMNEG00000030223	CNOT10 (ENSMNEG00000039743)	TRIM71 (ENSMNEG00000030331)	CCR4 (ENSMNEG00000015017)	GLB1 (ENSMNEG00000035974)	CRTAP (ENSMNEG00000041104)	SUSD5 (ENSMNEG00000041063)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.d #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.d #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Olive baboon	MODERN SPECIES		NCDN (ENSPANG00000017888) #8	TFAP2E (ENSPANG00000004801) #9	PSMB2 (ENSPANG00000007342) #10	ENSPANG00000047679	C1orf216 (ENSPANG00000023261) #11	CLSPN (ENSPANG00000023877) #12	AGO4 (ENSPANG00000007232) #14	AGO1 (ENSPANG00000009060) #15	AGO3 (ENSPANG00000007682) #16	ENSPANG00000032150	TEKT2 (ENSPANG00000010534) #17	ADPRS (ENSPANG00000010533) #18	COL8A2 (ENSPANG00000011822) #19	TRAPPC3 (ENSPANG00000013869) #20	MAP7D1 (ENSPANG00000006397) #21	THRAP3 (ENSPANG00000010532) #22	SH3D21 (ENSPANG00000019295) #23	EVA1B (ENSPANG00000023876) #24	STK40 (ENSPANG00000026394) #25	LSM10 (ENSPANG00000023172) #26	OSCP1 (ENSPANG00000009801) #27	ENSPANG00000009486 #28	CSF3R (ENSPANG00000004799) #29	ENSPANG00000002642	GRIK3 (ENSPANG00000005822) #30	ZC3H12A (ENSPANG00000011821) #31	MEAF6 (ENSPANG00000023016) #32	SNIP1 (ENSPANG00000016943) #33	DNALI1 (ENSPANG00000025521) #34	GNL2 (ENSPANG00000025285) #35	RSPO1 (ENSPANG00000016776) #36
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729.d #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.d #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00950000185476	ENSGT00390000015257.t #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Drill	MODERN SPECIES	996							AGO4 (ENSMLEG00000039490) #14	AGO1 (ENSMLEG00000038388) #15	AGO3 (ENSMLEG00000027912) #16	ENSMLEG00000006923	TEKT2 (ENSMLEG00000019450) #17	ADPRS (ENSMLEG00000040472) #18	COL8A2 (ENSMLEG00000044213) #19	TRAPPC3 (ENSMLEG00000030351) #20	MAP7D1 (ENSMLEG00000038403) #21	THRAP3 (ENSMLEG00000028924) #22	SH3D21 (ENSMLEG00000021402) #23	STK40 (ENSMLEG00000029415) #25	LSM10 (ENSMLEG00000025150) #26	OSCP1 (ENSMLEG00000018880) #27	ENSMLEG00000040975 #28	CSF3R (ENSMLEG00000039105) #29	GRIK3 (ENSMLEG00000031025) #30	ZC3H12A (ENSMLEG00000034570) #31	ENSMLEG00000021493
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	227	KIAA0319L (ENSCATG00000043672) #7	NCDN (ENSCATG00000043234) #8	TFAP2E (ENSCATG00000032602) #9	PSMB2 (ENSCATG00000038881) #10	C1orf216 (ENSCATG00000006919) #11	CLSPN (ENSCATG00000044080) #12	AGO4 (ENSCATG00000043421) #14	AGO1 (ENSCATG00000031521) #15	AGO3 (ENSCATG00000029748) #16	ENSCATG00000005617	TEKT2 (ENSCATG00000042764) #17	ADPRS (ENSCATG00000042745) #18	COL8A2 (ENSCATG00000032341) #19	TRAPPC3 (ENSCATG00000041647) #20	MAP7D1 (ENSCATG00000038724) #21	THRAP3 (ENSCATG00000038343) #22	SH3D21 (ENSCATG00000044150) #23	EVA1B (ENSCATG00000039327) #24	STK40 (ENSCATG00000039453) #25	LSM10 (ENSCATG00000006589) #26	OSCP1 (ENSCATG00000038966) #27	ENSCATG00000044771 #28	CSF3R (ENSCATG00000038990) #29	GRIK3 (ENSCATG00000038812) #30	ZC3H12A (ENSCATG00000037700) #31	ENSCATG00000006010	ENSCATG00000037164 #32	SNIP1 (ENSCATG00000039335) #33	DNALI1 (ENSCATG00000037101) #34	GNL2 (ENSCATG00000026503) #35	RSPO1 (ENSCATG00000037142) #36
Sooty mangabey	MODERN SPECIES	458																ENSCATG00000035101 #22	STT3B (ENSCATG00000034285)	OSBPL10 (ENSCATG00000038263)	GPD1L (ENSCATG00000038775)	CMTM8 (ENSCATG00000033422)	CMTM7 (ENSCATG00000014394)	ENSCATG00000030998	DYNC1LI1 (ENSCATG00000041634)	ENSCATG00000039673	ENSCATG00000000280	ENSCATG00000032297	CNOT10 (ENSCATG00000034330)	TRIM71 (ENSCATG00000039860)	CCR4 (ENSCATG00000006477)	GLB1 (ENSCATG00000030809)	ENSCATG00000008562
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.k.a #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364.i #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.k.a #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364.i #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Marmoset	MODERN SPECIES	19	ZMYM4 (ENSCJAG00000001447)	KIAA0319L (ENSCJAG00000001486) #7	NCDN (ENSCJAG00000001525) #8	TFAP2E (ENSCJAG00000001531) #9	PSMB2 (ENSCJAG00000038344) #10	C1orf216 (ENSCJAG00000044395) #11	CLSPN (ENSCJAG00000001559) #12	AGO4 (ENSCJAG00000001610) #14	AGO1 (ENSCJAG00000032023) #15	AGO3 (ENSCJAG00000031580) #16	TEKT2 (ENSCJAG00000001705) #17	ADPRS (ENSCJAG00000001719) #18	COL8A2 (ENSCJAG00000046041) #19	TRAPPC3 (ENSCJAG00000001734) #20	MAP7D1 (ENSCJAG00000001746) #21	THRAP3 (ENSCJAG00000001754) #22	SH3D21 (ENSCJAG00000001796) #23	EVA1B (ENSCJAG00000001807) #24	STK40 (ENSCJAG00000001818) #25	LSM10 (ENSCJAG00000044880) #26	OSCP1 (ENSCJAG00000001826) #27	MRPS15 (ENSCJAG00000001852) #28	CSF3R (ENSCJAG00000001860) #29	GRIK3 (ENSCJAG00000001873) #30	ZC3H12A (ENSCJAG00000056482) #31	MEAF6 (ENSCJAG00000001927) #32	SNIP1 (ENSCJAG00000001963) #33	DNALI1 (ENSCJAG00000057297) #34	ENSCJAG00000001998 #35	C1orf109 (ENSCJAG00000062886) #37	CDCA8 (ENSCJAG00000002008)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.k.a #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364.i #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553.r #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Capuchin	MODERN SPECIES	277	TFAP2E (ENSCCAG00000014473) #9	ENSCCAG00000025604 #10	ENSCCAG00000020290	C1orf216 (ENSCCAG00000032404) #11	ENSCCAG00000032336	CLSPN (ENSCCAG00000020740) #12	ENSCCAG00000007055	AGO4 (ENSCCAG00000001397) #14	AGO1 (ENSCCAG00000011823) #15	AGO3 (ENSCCAG00000034189) #16	TEKT2 (ENSCCAG00000034337) #17	ADPRS (ENSCCAG00000029534) #18	COL8A2 (ENSCCAG00000034498) #19	TRAPPC3 (ENSCCAG00000016538) #20	MAP7D1 (ENSCCAG00000023770) #21	THRAP3 (ENSCCAG00000028401) #22	SH3D21 (ENSCCAG00000027849) #23	EVA1B (ENSCCAG00000025930) #24	STK40 (ENSCCAG00000035718) #25	ENSCCAG00000037064	CEP63 (ENSCCAG00000027864)	KY (ENSCCAG00000017585)	EPHB1 (ENSCCAG00000024853)	PPP2R3A (ENSCCAG00000034294)	MSL2 (ENSCCAG00000018654)	ENSCCAG00000036817
Bolivian squirrel monkey	MODERN SPECIES	135	ENSSBOG00000024972	ZMYM4 (ENSSBOG00000033026)	KIAA0319L (ENSSBOG00000030468) #7	NCDN (ENSSBOG00000036150) #8	TFAP2E (ENSSBOG00000035566) #9	ENSSBOG00000035339 #10	CLSPN (ENSSBOG00000034344) #12	AGO4 (ENSSBOG00000026529) #14	AGO1 (ENSSBOG00000020867) #15	AGO3 (ENSSBOG00000029981) #16	TEKT2 (ENSSBOG00000022674) #17	ADPRS (ENSSBOG00000028837) #18	COL8A2 (ENSSBOG00000027384) #19	TRAPPC3 (ENSSBOG00000033429) #20	MAP7D1 (ENSSBOG00000032444) #21	THRAP3 (ENSSBOG00000029130) #22	SH3D21 (ENSSBOG00000032808) #23	EVA1B (ENSSBOG00000023166) #24	STK40 (ENSSBOG00000030732) #25	ENSSBOG00000036413 #26	OSCP1 (ENSSBOG00000014944) #27	MRPS15 (ENSSBOG00000034679) #28	CSF3R (ENSSBOG00000029331) #29	ENSSBOG00000025138	ENSSBOG00000032606	GRIK3 (ENSSBOG00000034275) #30	ZC3H12A (ENSSBOG00000028357) #31	MEAF6 (ENSSBOG00000033011) #32
Mas night monkey	DUPLICATION
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	957	KIAA0319L (ENSANAG00000030578) #7	NCDN (ENSANAG00000030003) #8	TFAP2E (ENSANAG00000033962) #9	PSMB2 (ENSANAG00000034782) #10	C1orf216 (ENSANAG00000017316) #11	CLSPN (ENSANAG00000037355) #12	AGO4 (ENSANAG00000031428) #14	AGO1 (ENSANAG00000037711) #15	AGO3 (ENSANAG00000037735) #16	TEKT2 (ENSANAG00000027050) #17	ADPRS (ENSANAG00000027244) #18	COL8A2 (ENSANAG00000030537) #19	TRAPPC3 (ENSANAG00000029327) #20	MAP7D1 (ENSANAG00000015395) #21	ENSANAG00000032677	ENSANAG00000024479 #22	SH3D21 (ENSANAG00000028854) #23	EVA1B (ENSANAG00000029581) #24	STK40 (ENSANAG00000026859) #25	ENSANAG00000018759 #26	OSCP1 (ENSANAG00000026578) #27	MRPS15 (ENSANAG00000024978) #28	CSF3R (ENSANAG00000031691) #29	ENSANAG00000029021	GRIK3 (ENSANAG00000037814) #30	ZC3H12A (ENSANAG00000009908) #31	ENSANAG00000028024 #32	SNIP1 (ENSANAG00000019123) #33	DNALI1 (ENSANAG00000014001) #34	GNL2 (ENSANAG00000023449) #35	RSPO1 (ENSANAG00000027107) #36
Mas night monkey	MODERN SPECIES	1333	HNRNPA3 (ENSANAG00000002931)	MTX2 (ENSANAG00000022501)	ENSANAG00000031061	HOXD1 (ENSANAG00000019775)	HOXD3 (ENSANAG00000026428)	HOXD4 (ENSANAG00000028028)	HOXD8 (ENSANAG00000026980)	HOXD9 (ENSANAG00000024699)	HOXD10 (ENSANAG00000025381)	HOXD11 (ENSANAG00000029678)	HOXD12 (ENSANAG00000008919)	HOXD13 (ENSANAG00000029500)	EVX2 (ENSANAG00000031929)	LNPK (ENSANAG00000019161)	ENSANAG00000021797	ENSANAG00000023367 #22	ENSANAG00000033889	ENSANAG00000037338	ENSANAG00000011341
Mas night monkey	MODERN SPECIES	1061	NGLY1 (ENSANAG00000021060)	OXSM (ENSANAG00000031063)	LRRC3B (ENSANAG00000019390)	NEK10 (ENSANAG00000020680)	SLC4A7 (ENSANAG00000033803)	EOMES (ENSANAG00000033599)	ENSANAG00000028605	CMC1 (ENSANAG00000033017)	AZI2 (ENSANAG00000032294)	ZCWPW2 (ENSANAG00000026346)	ENSANAG00000019465	RBMS3 (ENSANAG00000021899)	ENSANAG00000029841	TGFBR2 (ENSANAG00000026606)	GADL1 (ENSANAG00000007534)	ENSANAG00000030952 #22	STT3B (ENSANAG00000033353)	OSBPL10 (ENSANAG00000028037)	GPD1L (ENSANAG00000014659)	CMTM8 (ENSANAG00000028101)	ENSANAG00000027747	ENSANAG00000026200	ENSANAG00000029265	DYNC1LI1 (ENSANAG00000036308)	ENSANAG00000019325	CNOT10 (ENSANAG00000033966)	TRIM71 (ENSANAG00000022657)	CCR4 (ENSANAG00000017606)	GLB1 (ENSANAG00000028634)	TMPPE (ENSANAG00000020099)	CRTAP (ENSANAG00000037231)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Tree shrew	MODERN SPECIES	1734																THRAP3 (ENSTBEG00000016264) #22	ENSTBEG00000016377 #23	STK40 (ENSTBEG00000016464) #25	LSM10 (ENSTBEG00000016674) #26	OSCP1 (ENSTBEG00000016688) #27
Glires	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Lagomorpha	ANCESTRAL SPECIES	36	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000168963	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Rabbit	MODERN SPECIES	437	TFAP2E (ENSOCUG00000013190) #9	PSMB2 (ENSOCUG00000013198) #10	C1orf216 (ENSOCUG00000009123) #11	CLSPN (ENSOCUG00000017387) #12	AGO4 (ENSOCUG00000004076) #14	ENSOCUG00000008679	AGO1 (ENSOCUG00000023116) #15	AGO3 (ENSOCUG00000006255) #16	ENSOCUG00000035817	ENSOCUG00000027798	TEKT2 (ENSOCUG00000029722) #17	ADPRS (ENSOCUG00000011038) #18	COL8A2 (ENSOCUG00000011042) #19	TRAPPC3 (ENSOCUG00000011044) #20	MAP7D1 (ENSOCUG00000001551) #21	THRAP3 (ENSOCUG00000005323) #22	ENSOCUG00000003260 #23	ENSOCUG00000002287 #24	STK40 (ENSOCUG00000005325) #25	OSCP1 (ENSOCUG00000005337) #27	MRPS15 (ENSOCUG00000005675) #28	CSF3R (ENSOCUG00000011231) #29	GRIK3 (ENSOCUG00000005581) #30	ZC3H12A (ENSOCUG00000010856) #31	MEAF6 (ENSOCUG00000010862) #32	SNIP1 (ENSOCUG00000010867) #33	DNALI1 (ENSOCUG00000010871) #34	GNL2 (ENSOCUG00000010877) #35	ENSOCUG00000010888 #36	ENSOCUG00000021550 #37	CDCA8 (ENSOCUG00000017043)
Pika	MODERN SPECIES	1179																THRAP3 (ENSOPRG00000001637) #22	ENSOPRG00000018323 #23	ENSOPRG00000001654 #23	ENSOPRG00000001677	STK40 (ENSOPRG00000001683) #25	LSM10 (ENSOPRG00000001699) #26	OSCP1 (ENSOPRG00000001704) #27	MRPS15 (ENSOPRG00000001726) #28	CSF3R (ENSOPRG00000001738) #29
Rodentia	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Kangaroo rat	MODERN SPECIES	499	Zmym4 (ENSDORG00000010296)	ENSDORG00000028012 #7	ENSDORG00000029801	Ncdn (ENSDORG00000004799) #8	Tfap2e (ENSDORG00000004800) #9	Psmb2 (ENSDORG00000027956) #10	5730409E04Rik (ENSDORG00000027526) #11	Clspn (ENSDORG00000011179) #12	Ago4 (ENSDORG00000008933) #14	Ago1 (ENSDORG00000008494) #15	Ago3 (ENSDORG00000009414) #16	Tekt2 (ENSDORG00000001077) #17	Adprs (ENSDORG00000001078) #18	Col8a2 (ENSDORG00000025675) #19	Trappc3 (ENSDORG00000030245) #20	Thrap3 (ENSDORG00000013216) #22	Eva1b (ENSDORG00000027599) #24	Stk40 (ENSDORG00000008423) #25	Lsm10 (ENSDORG00000007579) #26	Oscp1 (ENSDORG00000007580) #27	ENSDORG00000007581 #28	Csf3r (ENSDORG00000007582) #29	Grik3 (ENSDORG00000012002) #30
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Lesser Egyptian jerboa	MODERN SPECIES	117	Zmym4 (ENSJJAG00000011913)	AU040320 (ENSJJAG00000023709) #7	Ncdn (ENSJJAG00000012057) #8	Tfap2e (ENSJJAG00000023486) #9	ENSJJAG00000015159 #10	5730409E04Rik (ENSJJAG00000009869) #11	Clspn (ENSJJAG00000023223) #12	ENSJJAG00000003401 #14	Ago1 (ENSJJAG00000019449) #15	Ago3 (ENSJJAG00000017436) #16	Tekt2 (ENSJJAG00000012392) #17	Adprs (ENSJJAG00000001557) #18	Col8a2 (ENSJJAG00000010113) #19	Trappc3 (ENSJJAG00000021017) #20	Map7d1 (ENSJJAG00000018805) #21	ENSJJAG00000024064 #22	ENSJJAG00000013087 #23	Eva1b (ENSJJAG00000000205) #24	Stk40 (ENSJJAG00000013773) #25	Oscp1 (ENSJJAG00000023834) #27	Mrps15 (ENSJJAG00000022198) #28	Csf3r (ENSJJAG00000017669) #29	Grik3 (ENSJJAG00000017762) #30	Zc3h12a (ENSJJAG00000004252) #31	ENSJJAG00000013630 #32	ENSJJAG00000000604	Snip1 (ENSJJAG00000023710) #33	Dnali1 (ENSJJAG00000002274) #34	Gnl2 (ENSJJAG00000010798) #35	Rspo1 (ENSJJAG00000001617) #36	Cdca8 (ENSJJAG00000020145)
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Rat	MODERN SPECIES	15	Zmym4 (ENSRNOG00000012397)	LOC100294508 (ENSRNOG00000012204) #7	Ncdn (ENSRNOG00000011751) #8	Tfap2e (ENSRNOG00000027595) #9	Psmb2 (ENSRNOG00000011463) #10	RGD1563072 (ENSRNOG00000021609) #11	Clspn (ENSRNOG00000011332) #12	Ago4 (ENSRNOG00000025596) #14	Ago1 (ENSRNOG00000055915) #15	Ago3 (ENSRNOG00000034269) #16	Tekt2 (ENSRNOG00000011033) #17	Adprs (ENSRNOG00000010849) #18	Col8a2 (ENSRNOG00000010841) #19	Trappc3 (ENSRNOG00000010550) #20	Map7d1 (ENSRNOG00000010237) #21	Thrap3 (ENSRNOG00000009977) #22	Sh3d21 (ENSRNOG00000024566) #23	Eva1b (ENSRNOG00000024818) #24	Stk40 (ENSRNOG00000025679) #25	Lsm10 (ENSRNOG00000068296) #26	Oscp1 (ENSRNOG00000026978) #27	Mrps15 (ENSRNOG00000008279) #28	Csf3r (ENSRNOG00000008759) #29	ENSRNOG00000063670	Grik3 (ENSRNOG00000008992) #30	Zc3h12a (ENSRNOG00000009131) #31	Meaf6 (ENSRNOG00000009309) #32	Snip1 (ENSRNOG00000024889) #33	Dnali1 (ENSRNOG00000024957) #34	Gnl2 (ENSRNOG00000009430) #35	Rspo1 (ENSRNOG00000009656) #36
Mus	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Shrew mouse	MODERN SPECIES	19	Zmym4 (MGP_PahariEiJ_G0028817)	AU040320 (MGP_PahariEiJ_G0028816) #7	Ncdn (MGP_PahariEiJ_G0028815) #8	Tfap2e (MGP_PahariEiJ_G0028814) #9	Psmb2 (MGP_PahariEiJ_G0028813) #10	5730409E04Rik (MGP_PahariEiJ_G0028812) #11	Clspn (MGP_PahariEiJ_G0028811) #12	Ago4 (MGP_PahariEiJ_G0028810) #14	Ago1 (MGP_PahariEiJ_G0028809) #15	Ago3 (MGP_PahariEiJ_G0028808) #16	Tekt2 (MGP_PahariEiJ_G0028807) #17	Adprs (MGP_PahariEiJ_G0028806) #18	Col8a2 (MGP_PahariEiJ_G0028805) #19	Trappc3 (MGP_PahariEiJ_G0028804) #20	Map7d1 (MGP_PahariEiJ_G0028803) #21	MGP_PahariEiJ_G0028802 #22	MGP_PahariEiJ_G0028801 #23	Eva1b (MGP_PahariEiJ_G0028800) #24	Stk40 (MGP_PahariEiJ_G0028799) #25	Lsm10 (MGP_PahariEiJ_G0028798) #26	Oscp1 (MGP_PahariEiJ_G0028797) #27	Mrps15 (MGP_PahariEiJ_G0028796) #28	Csf3r (MGP_PahariEiJ_G0028795) #29	Grik3 (MGP_PahariEiJ_G0028794) #30	Zc3h12a (MGP_PahariEiJ_G0028793) #31	Meaf6 (MGP_PahariEiJ_G0028792) #32	Snip1 (MGP_PahariEiJ_G0028791) #33	Dnali1 (MGP_PahariEiJ_G0028790) #34	Gnl2 (MGP_PahariEiJ_G0028789) #35	Rspo1 (MGP_PahariEiJ_G0028788) #36	MGP_PahariEiJ_G0028787
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES																	ENSGT00950000183163.a.a.e #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00950000183163.a.a.e #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00950000183163.a.a.e #22
Steppe mouse	MODERN SPECIES	2249																ENSMSIG00000009627 #22	ENSMSIG00000009559
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a.f #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a.f #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Mouse	MODERN SPECIES	13	Zmym4 (ENSMUSG00000042446)	AU040320 (ENSMUSG00000028830) #7	Ncdn (ENSMUSG00000028833) #8	Tfap2e (ENSMUSG00000042477) #9	Psmb2 (ENSMUSG00000028837) #10	5730409E04Rik (ENSMUSG00000073755) #11	Clspn (ENSMUSG00000042489) #12	Ago4 (ENSMUSG00000042500) #14	Ago1 (ENSMUSG00000041530) #15	Ago3 (ENSMUSG00000028842) #16	Tekt2 (ENSMUSG00000028845) #17	Adprs (ENSMUSG00000042558) #18	Col8a2 (ENSMUSG00000056174) #19	Trappc3 (ENSMUSG00000028847) #20	Map7d1 (ENSMUSG00000028849) #21	Thrap3 (ENSMUSG00000043962) #22	Sh3d21 (ENSMUSG00000073758) #23	Eva1b (ENSMUSG00000050212) #24	Stk40 (ENSMUSG00000042608) #25	Lsm10 (ENSMUSG00000050188) #26	Oscp1 (ENSMUSG00000042616) #27	Mrps15 (ENSMUSG00000028861) #28	Csf3r (ENSMUSG00000028859) #29	Grik3 (ENSMUSG00000001985) #30	Zc3h12a (ENSMUSG00000042677) #31	Meaf6 (ENSMUSG00000028863) #32	Snip1 (ENSMUSG00000050213) #33	Dnali1 (ENSMUSG00000042707) #34	Gnl2 (ENSMUSG00000028869) #35	Rspo1 (ENSMUSG00000028871) #36	9930104L06Rik (ENSMUSG00000044730) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a.f #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
spretus	MODERN SPECIES	13	Zmym4 (MGP_SPRETEiJ_G0027465)	AU040320 (MGP_SPRETEiJ_G0027464) #7	Ncdn (MGP_SPRETEiJ_G0027463) #8	Tfap2e (MGP_SPRETEiJ_G0027462) #9	Psmb2 (MGP_SPRETEiJ_G0027461) #10	5730409E04Rik (MGP_SPRETEiJ_G0027460) #11	Clspn (MGP_SPRETEiJ_G0027459) #12	Ago4 (MGP_SPRETEiJ_G0027458) #14	Ago1 (MGP_SPRETEiJ_G0027457) #15	Ago3 (MGP_SPRETEiJ_G0027456) #16	Tekt2 (MGP_SPRETEiJ_G0027455) #17	Adprs (MGP_SPRETEiJ_G0027454) #18	Col8a2 (MGP_SPRETEiJ_G0027453) #19	Trappc3 (MGP_SPRETEiJ_G0027452) #20	Map7d1 (MGP_SPRETEiJ_G0027451) #21	Thrap3 (MGP_SPRETEiJ_G0027450) #22	Sh3d21 (MGP_SPRETEiJ_G0027449) #23	Eva1b (MGP_SPRETEiJ_G0027448) #24	Stk40 (MGP_SPRETEiJ_G0027447) #25	Lsm10 (MGP_SPRETEiJ_G0027446) #26	Oscp1 (MGP_SPRETEiJ_G0027445) #27	Mrps15 (MGP_SPRETEiJ_G0027444) #28	Csf3r (MGP_SPRETEiJ_G0027443) #29	Grik3 (MGP_SPRETEiJ_G0027442) #30	Zc3h12a (MGP_SPRETEiJ_G0027441) #31	Meaf6 (MGP_SPRETEiJ_G0027440) #32	Snip1 (MGP_SPRETEiJ_G0027439) #33	Dnali1 (MGP_SPRETEiJ_G0027438) #34	Gnl2 (MGP_SPRETEiJ_G0027437) #35	Rspo1 (MGP_SPRETEiJ_G0027436) #36	Cdca8 (MGP_SPRETEiJ_G0027435)
Steppe mouse	MODERN SPECIES	3362	Ncdn (ENSMSIG00000016728) #8	Tfap2e (ENSMSIG00000016711) #9	Psmb2 (ENSMSIG00000016704) #10	ENSMSIG00000016700	5730409E04Rik (ENSMSIG00000016696) #11	ENSMSIG00000016695	Clspn (ENSMSIG00000016630) #12	Ago4 (ENSMSIG00000016601) #14	Ago1 (ENSMSIG00000016559) #15	Ago3 (ENSMSIG00000016468) #16	Tekt2 (ENSMSIG00000016431) #17	Adprs (ENSMSIG00000016412) #18	Col8a2 (ENSMSIG00000016393) #19	Trappc3 (ENSMSIG00000016379) #20	Map7d1 (ENSMSIG00000016217) #21	Thrap3 (ENSMSIG00000016164) #22	Sh3d21 (ENSMSIG00000016082) #23	Eva1b (ENSMSIG00000016045) #24	Stk40 (ENSMSIG00000016008) #25	Lsm10 (ENSMSIG00000016001) #26	Oscp1 (ENSMSIG00000015894) #27	Mrps15 (ENSMSIG00000015874) #28	Csf3r (ENSMSIG00000015810) #29	Grik3 (ENSMSIG00000015725) #30	Zc3h12a (ENSMSIG00000015699) #31	Meaf6 (ENSMSIG00000015611) #32	Snip1 (ENSMSIG00000015594) #33	ENSMSIG00000015561 #34	Gnl2 (ENSMSIG00000015516) #35	Rspo1 (ENSMSIG00000015498) #36	9930104L06Rik (ENSMSIG00000015482) #37
Ryukyu mouse	MODERN SPECIES	13	Zmym4 (MGP_CAROLIEiJ_G0026486)	AU040320 (MGP_CAROLIEiJ_G0026485) #7	Ncdn (MGP_CAROLIEiJ_G0026484) #8	Tfap2e (MGP_CAROLIEiJ_G0026483) #9	Psmb2 (MGP_CAROLIEiJ_G0026482) #10	5730409E04Rik (MGP_CAROLIEiJ_G0026481) #11	MGP_CAROLIEiJ_G0026480 #12	Ago4 (MGP_CAROLIEiJ_G0026479) #14	Ago1 (MGP_CAROLIEiJ_G0026478) #15	Ago3 (MGP_CAROLIEiJ_G0026477) #16	Tekt2 (MGP_CAROLIEiJ_G0026476) #17	Adprs (MGP_CAROLIEiJ_G0026475) #18	Col8a2 (MGP_CAROLIEiJ_G0026474) #19	Trappc3 (MGP_CAROLIEiJ_G0026473) #20	Map7d1 (MGP_CAROLIEiJ_G0026472) #21	MGP_CAROLIEiJ_G0026471 #22	Sh3d21 (MGP_CAROLIEiJ_G0026470) #23	Eva1b (MGP_CAROLIEiJ_G0026469) #24	Stk40 (MGP_CAROLIEiJ_G0026468) #25	Lsm10 (MGP_CAROLIEiJ_G0026467) #26	Oscp1 (MGP_CAROLIEiJ_G0026466) #27	Mrps15 (MGP_CAROLIEiJ_G0026465) #28	Csf3r (MGP_CAROLIEiJ_G0026464) #29	Grik3 (MGP_CAROLIEiJ_G0026463) #30	Zc3h12a (MGP_CAROLIEiJ_G0026462) #31	Meaf6 (MGP_CAROLIEiJ_G0026461) #32	Snip1 (MGP_CAROLIEiJ_G0026460) #33	Dnali1 (MGP_CAROLIEiJ_G0026459) #34	Gnl2 (MGP_CAROLIEiJ_G0026458) #35	Rspo1 (MGP_CAROLIEiJ_G0026457) #36	Cdca8 (MGP_CAROLIEiJ_G0026456)
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b.e #25	ENSGT00950000182986.b.f #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Golden Hamster	MODERN SPECIES	783						5730409E04Rik (ENSMAUG00000019105) #11	Clspn (ENSMAUG00000016563) #12	Ago4 (ENSMAUG00000021743) #14	Ago1 (ENSMAUG00000015189) #15	Ago3 (ENSMAUG00000010128) #16	Tekt2 (ENSMAUG00000011830) #17	Adprs (ENSMAUG00000017195) #18	Col8a2 (ENSMAUG00000000665) #19	Trappc3 (ENSMAUG00000019950) #20	ENSMAUG00000016543 #21	Thrap3 (ENSMAUG00000019723) #22	Sh3d21 (ENSMAUG00000014506) #23	Eva1b (ENSMAUG00000010494) #24	Stk40 (ENSMAUG00000014659) #25	Oscp1 (ENSMAUG00000004945) #27	Mrps15 (ENSMAUG00000021202) #28	Csf3r (ENSMAUG00000001404) #29	Grik3 (ENSMAUG00000018300) #30	Zc3h12a (ENSMAUG00000012893) #31	Meaf6 (ENSMAUG00000009391) #32	Snip1 (ENSMAUG00000015995) #33	Dnali1 (ENSMAUG00000008689) #34	Gnl2 (ENSMAUG00000018529) #35	Rspo1 (ENSMAUG00000017138) #36	9930104L06Rik (ENSMAUG00000001306) #37	Cdca8 (ENSMAUG00000001752)
Chinese hamster chok1gshd	MODERN SPECIES	111	Ncdn (ENSCGRG00001016309) #8	Tfap2e (ENSCGRG00001004504) #9	Psmb2 (ENSCGRG00001009469) #10	ENSCGRG00001003912	5730409E04Rik (ENSCGRG00001001609) #11	Clspn (ENSCGRG00001014483) #12	Ago4 (ENSCGRG00001002701) #14	Ago1 (ENSCGRG00001022708) #15	Ago3 (ENSCGRG00001024614) #16	Tekt2 (ENSCGRG00001021518) #17	Adprs (ENSCGRG00001023363) #18	Col8a2 (ENSCGRG00001019144) #19	ENSCGRG00001020476	Trappc3 (ENSCGRG00001020776) #20	Map7d1 (ENSCGRG00001022850) #21	Thrap3 (ENSCGRG00001003105) #22	Sh3d21 (ENSCGRG00001013521) #23	Eva1b (ENSCGRG00001016486) #24	ENSCGRG00001000587 #25	ENSCGRG00001004317 #26	Oscp1 (ENSCGRG00001012967) #27	Mrps15 (ENSCGRG00001019050) #28	Csf3r (ENSCGRG00001021810) #29	Grik3 (ENSCGRG00001012192) #30	Zc3h12a (ENSCGRG00001015497) #31	Meaf6 (ENSCGRG00001006760) #32	Snip1 (ENSCGRG00001010414) #33	Dnali1 (ENSCGRG00001012511) #34	Gnl2 (ENSCGRG00001016733) #35	Rspo1 (ENSCGRG00001017490) #36	9930104L06Rik (ENSCGRG00001024913) #37
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	11	Zmym4 (ENSPEMG00000022163)	AU040320 (ENSPEMG00000004246) #7	Ncdn (ENSPEMG00000013918) #8	Tfap2e (ENSPEMG00000023893) #9	Psmb2 (ENSPEMG00000001295) #10	5730409E04Rik (ENSPEMG00000029022) #11	Clspn (ENSPEMG00000024140) #12	ENSPEMG00000022651 #14	Ago1 (ENSPEMG00000023313) #15	Ago3 (ENSPEMG00000024271) #16	Tekt2 (ENSPEMG00000007126) #17	Adprs (ENSPEMG00000015344) #18	Col8a2 (ENSPEMG00000030728) #19	Trappc3 (ENSPEMG00000017774) #20	Map7d1 (ENSPEMG00000018714) #21	Thrap3 (ENSPEMG00000023512) #22	Sh3d21 (ENSPEMG00000022518) #23	Eva1b (ENSPEMG00000017056) #24	Stk40 (ENSPEMG00000010968) #25	Lsm10 (ENSPEMG00000029690) #26	Oscp1 (ENSPEMG00000021248) #27	Mrps15 (ENSPEMG00000022897) #28	Csf3r (ENSPEMG00000021902) #29	Grik3 (ENSPEMG00000020816) #30	Zc3h12a (ENSPEMG00000024080) #31	Meaf6 (ENSPEMG00000023877) #32	Snip1 (ENSPEMG00000021090) #33	Dnali1 (ENSPEMG00000020987) #34	Gnl2 (ENSPEMG00000021234) #35	Rspo1 (ENSPEMG00000021279) #36	9930104L06Rik (ENSPEMG00000022126) #37
Northern American deer mouse	MODERN SPECIES	20	Tmed3 (ENSPEMG00000019885)	Ankrd34c (ENSPEMG00000020141)	Rasgrf1 (ENSPEMG00000019313)	Ctsh (ENSPEMG00000019736)	Morf4l1 (ENSPEMG00000019429)	Adamts7 (ENSPEMG00000017976)	Tbc1d2b (ENSPEMG00000000960)	Zic1 (ENSPEMG00000019412)	Zic4 (ENSPEMG00000026607)	Plscr5 (ENSPEMG00000019462)	Plscr1 (ENSPEMG00000019486)	Plscr2 (ENSPEMG00000019567)	1700057G04Rik (ENSPEMG00000019593)	Plscr4 (ENSPEMG00000019619)	Plod2 (ENSPEMG00000023460)	ENSPEMG00000019304 #22	Dipk2a (ENSPEMG00000019631)	Slc9a9 (ENSPEMG00000019907)	Chst2 (ENSPEMG00000019658)	U2surp (ENSPEMG00000020825)	Paqr9 (ENSPEMG00000021256)	Pcolce2 (ENSPEMG00000021235)	Trpc1 (ENSPEMG00000021151)	Pls1 (ENSPEMG00000023583)	Atr (ENSPEMG00000022407)	Xrn1 (ENSPEMG00000020610)	ENSPEMG00000028629	Gk5 (ENSPEMG00000021213)	Tfdp2 (ENSPEMG00000020459)	ENSPEMG00000025894	ENSPEMG00000020541
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES		ENSMOCG00000022665	Sp4 (ENSMOCG00000016482)	Dnah11 (ENSMOCG00000015979)	Cdca7l (ENSMOCG00000017529)	Rapgef5 (ENSMOCG00000008682)	ENSMOCG00000001797	Ptprn2 (ENSMOCG00000015064)	Ncapg2 (ENSMOCG00000022899)	Esyt2 (ENSMOCG00000000676)	Dync2i1 (ENSMOCG00000017481)	Vipr2 (ENSMOCG00000018122)	ENSMOCG00000016119	ENSMOCG00000008994	ENSMOCG00000002030	ENSMOCG00000016167	ENSMOCG00000006712 #22	Ighm (ENSMOCG00000021689)	ENSMOCG00000020403	Tmem121 (ENSMOCG00000008761)	ENSMOCG00000009709	Tedc1 (ENSMOCG00000018454)	ENSMOCG00000009725	ENSMOCG00000006199	Mta1 (ENSMOCG00000019316)	Tex22 (ENSMOCG00000003772)	Pacs2 (ENSMOCG00000002425)	Btbd6 (ENSMOCG00000021298)	Brf1 (ENSMOCG00000017813)	Nudt14 (ENSMOCG00000005584)	Jag2 (ENSMOCG00000022935)	Gpr132 (ENSMOCG00000013396)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	ENSMOCG00000003001 #7	ENSMOCG00000010938	Ncdn (ENSMOCG00000002663) #8	Tfap2e (ENSMOCG00000008257) #9	ENSMOCG00000003664 #10	5730409E04Rik (ENSMOCG00000007468) #11	Clspn (ENSMOCG00000018907) #12	Ago4 (ENSMOCG00000005772) #14	Ago1 (ENSMOCG00000000537) #15	Ago3 (ENSMOCG00000020568) #16	Tekt2 (ENSMOCG00000017440) #17	Adprs (ENSMOCG00000019508) #18	Col8a2 (ENSMOCG00000012957) #19	Trappc3 (ENSMOCG00000013847) #20	Map7d1 (ENSMOCG00000019568) #21	ENSMOCG00000005500 #22	ENSMOCG00000015795	Eva1b (ENSMOCG00000017606) #24	Stk40 (ENSMOCG00000019033) #25	Lsm10 (ENSMOCG00000021943) #26	Oscp1 (ENSMOCG00000001484) #27	Mrps15 (ENSMOCG00000004474) #28	Csf3r (ENSMOCG00000015592) #29	Grik3 (ENSMOCG00000009075) #30	ENSMOCG00000009417	Zc3h12a (ENSMOCG00000001899) #31	Meaf6 (ENSMOCG00000019012) #32	Snip1 (ENSMOCG00000008716) #33	Dnali1 (ENSMOCG00000003328) #34	Gnl2 (ENSMOCG00000016365) #35	Rspo1 (ENSMOCG00000022465) #36
Prairie vole	MODERN SPECIES	83	Vamp8 (ENSMOCG00000004037)	Ggcx (ENSMOCG00000017281)	ENSMOCG00000011611	Sh2d6 (ENSMOCG00000015508)	Capg (ENSMOCG00000005806)	Elmod3 (ENSMOCG00000015870)	ENSMOCG00000002524	ENSMOCG00000000675	Retsat (ENSMOCG00000021447)	ENSMOCG00000000091	Tcf7l1 (ENSMOCG00000012953)	Kcmf1 (ENSMOCG00000003279)	ENSMOCG00000012602	Dnah6 (ENSMOCG00000002417)	Suclg1 (ENSMOCG00000021421)	ENSMOCG00000004435 #22	ENSMOCG00000016382	Lrrtm1 (ENSMOCG00000015921)	ENSMOCG00000019395	Reg3b (ENSMOCG00000000127)	Reg2 (ENSMOCG00000019434)	Reg3g (ENSMOCG00000000838)	ENSMOCG00000003469	ENSMOCG00000015470	Lrrtm4 (ENSMOCG00000008317)	ENSMOCG00000000151	Gcfc2 (ENSMOCG00000017779)	ENSMOCG00000018596	Eva1a (ENSMOCG00000012884) ##24	Tacr1 (ENSMOCG00000006018)	Pole4 (ENSMOCG00000016768)
Upper Galilee mountains blind mole rat	DUPLICATION
Upper Galilee mountains blind mole rat	MODERN SPECIES	775	ENSNGAG00000013255 #7	ENSNGAG00000019339	Ncdn (ENSNGAG00000016923) #8	Tfap2e (ENSNGAG00000020679) #9	Psmb2 (ENSNGAG00000002741) #10	5730409E04Rik (ENSNGAG00000004304) #11	Clspn (ENSNGAG00000017502) #12	Ago4 (ENSNGAG00000020544) #14	Ago1 (ENSNGAG00000017448) #15	Ago3 (ENSNGAG00000012607) #16	Tekt2 (ENSNGAG00000015353) #17	Adprs (ENSNGAG00000015743) #18	Col8a2 (ENSNGAG00000017271) #19	Trappc3 (ENSNGAG00000017785) #20	Map7d1 (ENSNGAG00000019773) #21	Thrap3 (ENSNGAG00000010876) #22	Sh3d21 (ENSNGAG00000013731) #23	Eva1b (ENSNGAG00000021220) #24	Stk40 (ENSNGAG00000021449) #25	Lsm10 (ENSNGAG00000015011) #26	Oscp1 (ENSNGAG00000015958) #27	Mrps15 (ENSNGAG00000018718) #28	Csf3r (ENSNGAG00000020143) #29
Upper Galilee mountains blind mole rat	MODERN SPECIES	928										ENSNGAG00000011241	Hecw2 (ENSNGAG00000013883)	ENSNGAG00000000961	ENSNGAG00000022114	Slc39a10 (ENSNGAG00000011173)	ENSNGAG00000016764	ENSNGAG00000021690 #22	Tmeff2 (ENSNGAG00000018754)	Cavin2 (ENSNGAG00000023002)	Nabp1 (ENSNGAG00000006505)	ENSNGAG00000018958	Myo1b (ENSNGAG00000023056)	Stat4 (ENSNGAG00000021305)	Stat1 (ENSNGAG00000021916)	Gls (ENSNGAG00000022784)	Nab1 (ENSNGAG00000005980)	Nemp2 (ENSNGAG00000021036)	Mfsd6 (ENSNGAG00000017357)	Inpp1 (ENSNGAG00000013999)	Hibch (ENSNGAG00000014329)	1700019D03Rik (ENSNGAG00000010148)	Mstn (ENSNGAG00000009589)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256.f #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Marmotini	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256.f #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256.f #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Arctic ground squirrel	MODERN SPECIES	120	ZMYM4 (ENSUPAG00010000592)	KIAA0319L (ENSUPAG00010000550) #7	NCDN (ENSUPAG00010000503) #8	TFAP2E (ENSUPAG00010000482) #9	PSMB2 (ENSUPAG00010000458) #10	C1orf216 (ENSUPAG00010000447) #11	CLSPN (ENSUPAG00010000278) #12	AGO4 (ENSUPAG00010000240) #14	AGO1 (ENSUPAG00010000213) #15	AGO3 (ENSUPAG00010000133) #16	TEKT2 (ENSUPAG00010000079) #17	ADPRS (ENSUPAG00010000029) #18	COL8A2 (ENSUPAG00010017659) #19	TRAPPC3 (ENSUPAG00010017653) #20	MAP7D1 (ENSUPAG00010017568) #21	THRAP3 (ENSUPAG00010017531) #22	SH3D21 (ENSUPAG00010017516) #23	EVA1B (ENSUPAG00010017508) #24	STK40 (ENSUPAG00010017491) #25	ENSUPAG00010017484 #26	OSCP1 (ENSUPAG00010017454) #27	MRPS15 (ENSUPAG00010017437) #28	CSF3R (ENSUPAG00010017417) #29	GRIK3 (ENSUPAG00010017396) #30	ZC3H12A (ENSUPAG00010017379) #31	MEAF6 (ENSUPAG00010017344) #32	SNIP1 (ENSUPAG00010017338) #33	DNALI1 (ENSUPAG00010017332) #34	ENSUPAG00010017290	RSPO1 (ENSUPAG00010017283) #36	C1orf109 (ENSUPAG00010017276) #37
Squirrel	MODERN SPECIES	74	ENSSTOG00000022215	NCDN (ENSSTOG00000025477) #8	TFAP2E (ENSSTOG00000001781) #9	PSMB2 (ENSSTOG00000001795) #10	ENSSTOG00000025789	C1orf216 (ENSSTOG00000000870) #11	CLSPN (ENSSTOG00000021294) #12	AGO4 (ENSSTOG00000004725) #14	AGO1 (ENSSTOG00000010857) #15	AGO3 (ENSSTOG00000025904) #16	TEKT2 (ENSSTOG00000010245) #17	ADPRS (ENSSTOG00000010251) #18	COL8A2 (ENSSTOG00000023344) #19	TRAPPC3 (ENSSTOG00000010270) #20	MAP7D1 (ENSSTOG00000010274) #21	THRAP3 (ENSSTOG00000000602) #22	EVA1B (ENSSTOG00000023164) #24	STK40 (ENSSTOG00000027085) #25	LSM10 (ENSSTOG00000000606) #26	OSCP1 (ENSSTOG00000000607) #27	MRPS15 (ENSSTOG00000000608) #28	CSF3R (ENSSTOG00000000615) #29	GRIK3 (ENSSTOG00000010632) #30	ZC3H12A (ENSSTOG00000026842) #31	MEAF6 (ENSSTOG00000005166) #32	SNIP1 (ENSSTOG00000025511) #33	DNALI1 (ENSSTOG00000005196) #34	GNL2 (ENSSTOG00000005217) #35	RSPO1 (ENSSTOG00000005254) #36	C1orf109 (ENSSTOG00000000834) #37	CDCA8 (ENSSTOG00000000833)
Alpin marmot	MODERN SPECIES	15	ZMYM4 (ENSMMMG00000007967)	KIAA0319L (ENSMMMG00000007937) #7	NCDN (ENSMMMG00000007929) #8	TFAP2E (ENSMMMG00000007915) #9	PSMB2 (ENSMMMG00000007906) #10	C1orf216 (ENSMMMG00000007900) #11	CLSPN (ENSMMMG00000007847) #12	AGO4 (ENSMMMG00000007806) #14	AGO1 (ENSMMMG00000007780) #15	AGO3 (ENSMMMG00000007745) #16	TEKT2 (ENSMMMG00000007715) #17	ADPRS (ENSMMMG00000007700) #18	COL8A2 (ENSMMMG00000007686) #19	TRAPPC3 (ENSMMMG00000007674) #20	MAP7D1 (ENSMMMG00000006325) #21	THRAP3 (ENSMMMG00000006271) #22	SH3D21 (ENSMMMG00000006222) #23	EVA1B (ENSMMMG00000006211) #24	STK40 (ENSMMMG00000006181) #25	LSM10 (ENSMMMG00000006179) #26	ENSMMMG00000006174 #27	MRPS15 (ENSMMMG00000006160) #28	CSF3R (ENSMMMG00000006145) #29	ENSMMMG00000006132	GRIK3 (ENSMMMG00000006114) #30	ZC3H12A (ENSMMMG00000006073) #31	SNIP1 (ENSMMMG00000006068) #33	DNALI1 (ENSMMMG00000006059) #34	GNL2 (ENSMMMG00000006031) #35	RSPO1 (ENSMMMG00000006021) #36	C1orf109 (ENSMMMG00000006007) #37
Eurasian red squirrel	MODERN SPECIES		ZMYM4 (ENSSVLG00005001206)	KIAA0319L (ENSSVLG00005001304) #7	NCDN (ENSSVLG00005001362) #8	TFAP2E (ENSSVLG00005001387) #9	PSMB2 (ENSSVLG00005001408) #10	C1orf216 (ENSSVLG00005001422) #11	CLSPN (ENSSVLG00005001487) #12	AGO4 (ENSSVLG00005001696) #14	AGO1 (ENSSVLG00005001765) #15	AGO3 (ENSSVLG00005001834) #16	TEKT2 (ENSSVLG00005001949) #17	ADPRS (ENSSVLG00005001975) #18	COL8A2 (ENSSVLG00005001986) #19	TRAPPC3 (ENSSVLG00005002006) #20	MAP7D1 (ENSSVLG00005002056) #21	THRAP3 (ENSSVLG00005002113) #22	ENSSVLG00005002147	ENSSVLG00005002157 #23	EVA1B (ENSSVLG00005002184) #24	STK40 (ENSSVLG00005002214) #25	LSM10 (ENSSVLG00005002235) #26	OSCP1 (ENSSVLG00005002261) #27	MRPS15 (ENSSVLG00005002313) #28	CSF3R (ENSSVLG00005002340) #29	GRIK3 (ENSSVLG00005002397) #30	ZC3H12A (ENSSVLG00005002445) #31	MEAF6 (ENSSVLG00005002483) #32	SNIP1 (ENSSVLG00005002539) #33	DNALI1 (ENSSVLG00005002552) #34	GNL2 (ENSSVLG00005002574) #35	RSPO1 (ENSSVLG00005002610) #36
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Naked mole-rat female	MODERN SPECIES	26	KIAA0319L (ENSHGLG00000010433) #7	NCDN (ENSHGLG00000012088) #8	TFAP2E (ENSHGLG00000035632) #9	PSMB2 (ENSHGLG00000039477) #10	C1orf216 (ENSHGLG00000013004) #11	ENSHGLG00000039952	CLSPN (ENSHGLG00000013282) #12	AGO4 (ENSHGLG00000010241) #14	AGO1 (ENSHGLG00000011540) #15	AGO3 (ENSHGLG00000012538) #16	TEKT2 (ENSHGLG00000019203) #17	ADPRS (ENSHGLG00000018720) #18	ENSHGLG00000033231	ENSHGLG00000013854 #20	MAP7D1 (ENSHGLG00000014101) #21	THRAP3 (ENSHGLG00000019374) #22	ENSHGLG00000011928	ENSHGLG00000035766 #24	STK40 (ENSHGLG00000010896) #25	ENSHGLG00000011625 #26	OSCP1 (ENSHGLG00000011822) #27	ENSHGLG00000047064 #28	ENSHGLG00000044262	CSF3R (ENSHGLG00000010743) #29	GRIK3 (ENSHGLG00000011776) #30	ENSHGLG00000046483	ZC3H12A (ENSHGLG00000012808) #31	MEAF6 (ENSHGLG00000013675) #32	SNIP1 (ENSHGLG00000045104) #33	DNALI1 (ENSHGLG00000012722) #34	GNL2 (ENSHGLG00000013728) #35
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Guinea pig	MODERN SPECIES	25	KIAA0319L (ENSCPOG00000008350) #7	NCDN (ENSCPOG00000023962) #8	TFAP2E (ENSCPOG00000024445) #9	PSMB2 (ENSCPOG00000036531) #10	C1orf216 (ENSCPOG00000031562) #11	ENSCPOG00000011544 #12	AGO4 (ENSCPOG00000011557) #14	AGO1 (ENSCPOG00000011568) #15	AGO3 (ENSCPOG00000030524) #16	TEKT2 (ENSCPOG00000006152) #17	ADPRS (ENSCPOG00000031369) #18	COL8A2 (ENSCPOG00000039740) #19	TRAPPC3 (ENSCPOG00000038851) #20	MAP7D1 (ENSCPOG00000000559) #21	ENSCPOG00000037255	THRAP3 (ENSCPOG00000015742) #22	EVA1B (ENSCPOG00000020754) #24	STK40 (ENSCPOG00000027226) #25	LSM10 (ENSCPOG00000039302) #26	OSCP1 (ENSCPOG00000010874) #27	MRPS15 (ENSCPOG00000010877) #28	CSF3R (ENSCPOG00000010879) #29	GRIK3 (ENSCPOG00000025605) #30	ZC3H12A (ENSCPOG00000011081) #31	MEAF6 (ENSCPOG00000025988) #32	SNIP1 (ENSCPOG00000011083) #33	DNALI1 (ENSCPOG00000011086) #34	GNL2 (ENSCPOG00000026804) #35	RSPO1 (ENSCPOG00000038977) #36	C1orf109 (ENSCPOG00000001227) #37	CDCA8 (ENSCPOG00000001228)
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Long-tailed chinchilla	MODERN SPECIES	159	ZMYM4 (ENSCLAG00000009236)	KIAA0319L (ENSCLAG00000012151) #7	NCDN (ENSCLAG00000008627) #8	TFAP2E (ENSCLAG00000014043) #9	PSMB2 (ENSCLAG00000011404) #10	C1orf216 (ENSCLAG00000014133) #11	CLSPN (ENSCLAG00000009173) #12	AGO4 (ENSCLAG00000012097) #14	AGO1 (ENSCLAG00000011507) #15	AGO3 (ENSCLAG00000013184) #16	TEKT2 (ENSCLAG00000011534) #17	ADPRS (ENSCLAG00000013083) #18	COL8A2 (ENSCLAG00000007777) #19	TRAPPC3 (ENSCLAG00000007951) #20	MAP7D1 (ENSCLAG00000011145) #21	THRAP3 (ENSCLAG00000013043) #22	ENSCLAG00000014941 #23	EVA1B (ENSCLAG00000012665) #24	STK40 (ENSCLAG00000008274) #25	LSM10 (ENSCLAG00000008633) #26	OSCP1 (ENSCLAG00000008808) #27	MRPS15 (ENSCLAG00000015562) #28	CSF3R (ENSCLAG00000013775) #29	GRIK3 (ENSCLAG00000012617) #30	ZC3H12A (ENSCLAG00000008722) #31	MEAF6 (ENSCLAG00000011410) #32	SNIP1 (ENSCLAG00000014140) #33	DNALI1 (ENSCLAG00000014051) #34	GNL2 (ENSCLAG00000012504) #35	RSPO1 (ENSCLAG00000016364) #36	C1orf109 (ENSCLAG00000008471) #37
Degu	DUPLICATION
Degu	MODERN SPECIES	171	TFAP2E (ENSODEG00000004925) #9	PSMB2 (ENSODEG00000006435) #10	ENSODEG00000019417	CLSPN (ENSODEG00000006133) #12	AGO4 (ENSODEG00000006355) #14	ENSODEG00000007754	AGO1 (ENSODEG00000005321) #15	AGO3 (ENSODEG00000005161) #16	ENSODEG00000019305	ENSODEG00000006322	TEKT2 (ENSODEG00000007150) #17	ADPRS (ENSODEG00000006213) #18	ENSODEG00000006340 #19	ENSODEG00000007410 #20	MAP7D1 (ENSODEG00000005198) #21	ENSODEG00000006090 #22	SH3D21 (ENSODEG00000005155) #23	EVA1B (ENSODEG00000006459) #24	STK40 (ENSODEG00000005380) #25	LSM10 (ENSODEG00000019161) #26	OSCP1 (ENSODEG00000005227) #27	MRPS15 (ENSODEG00000005390) #28	CSF3R (ENSODEG00000006285) #29	GRIK3 (ENSODEG00000005952) #30	ENSODEG00000019238	ZC3H12A (ENSODEG00000005643) #31	ENSODEG00000007741 #32	SNIP1 (ENSODEG00000005648) #33	DNALI1 (ENSODEG00000006719) #34	ENSODEG00000005679	RSPO1 (ENSODEG00000005377) #36
Degu	MODERN SPECIES	137	FARSB (ENSODEG00000005451)	ENSODEG00000019468	MOGAT1 (ENSODEG00000007108)	ACSL3 (ENSODEG00000005596)	ENSODEG00000005263	SCG2 (ENSODEG00000005187)	ENSODEG00000005931	ENSODEG00000005677	ENSODEG00000005654	MRPL44 (ENSODEG00000006415)	SERPINE2 (ENSODEG00000005496)	FAM124B (ENSODEG00000005053)	CUL3 (ENSODEG00000006176)	CCDC195 (ENSODEG00000005812)	DOCK10 (ENSODEG00000005671)	ENSODEG00000006184 #22	NYAP2 (ENSODEG00000006251)	IRS1 (ENSODEG00000006768)	RHBDD1 (ENSODEG00000006375)	COL4A4 (ENSODEG00000006651)	ENSODEG00000006320	ENSODEG00000004929	TM4SF20 (ENSODEG00000004688)	ENSODEG00000006150	ENSODEG00000005117	ENSODEG00000005883	SLC19A3 (ENSODEG00000005319)	ENSODEG00000005323	DAW1 (ENSODEG00000006316)	SPHKAP (ENSODEG00000005853)
Degu	MODERN SPECIES	50			RGS18 (ENSODEG00000013926)	RGS21 (ENSODEG00000009295)	RGS1 (ENSODEG00000009482)	RGS13 (ENSODEG00000009567)	RGS2 (ENSODEG00000010209)	ENSODEG00000011024	RO60 (ENSODEG00000010468)	GLRX2 (ENSODEG00000010878)	CDC73 (ENSODEG00000010481)	B3GALT2 (ENSODEG00000011536)	ENSODEG00000011003	ENSODEG00000019692	ENSODEG00000019716	ENSODEG00000010768 #22	KCNT2 (ENSODEG00000009673)	ENSODEG00000010026	ENSODEG00000010990	ZBTB41 (ENSODEG00000013022)	ENSODEG00000011989	DENND1B (ENSODEG00000010445)	C1orf53 (ENSODEG00000010198)	LHX9 (ENSODEG00000010844)	NEK7 (ENSODEG00000011591)	ENSODEG00000012489	ENSODEG00000019948	ATP6V1G3 (ENSODEG00000011992)	PTPRC (ENSODEG00000009940)	ENSODEG00000010173	ENSODEG00000010467
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000168963	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Suina	ANCESTRAL SPECIES	10	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Pig	MODERN SPECIES	14	ENSSSCG00000062913	NCDN (ENSSSCG00000031786) #8	TFAP2E (ENSSSCG00000040097) #9	PSMB2 (ENSSSCG00000035914) #10	ENSSSCG00000037699	C1orf216 (ENSSSCG00000037600) #11	CLSPN (ENSSSCG00000003628) #12	AGO3 (ENSSSCG00000003630) #16	ENSSSCG00000055207	ENSSSCG00000003632	TEKT2 (ENSSSCG00000003633) #17	ADPRS (ENSSSCG00000003634) #18	COL8A2 (ENSSSCG00000033641) #19	TRAPPC3 (ENSSSCG00000037213) #20	MAP7D1 (ENSSSCG00000003637) #21	THRAP3 (ENSSSCG00000029954) #22	ENSSSCG00000028892 #23	EVA1B (ENSSSCG00000033892) #24	STK40 (ENSSSCG00000036832) #25	LSM10 (ENSSSCG00000038916) #26	OSCP1 (ENSSSCG00000036709) #27	MRPS15 (ENSSSCG00000034647) #28	CSF3R (ENSSSCG00000025795) #29	GRIK3 (ENSSSCG00000003640) #30	ZC3H12A (ENSSSCG00000037815) #31	MEAF6 (ENSSSCG00000034611) #32	SNIP1 (ENSSSCG00000029991) #33	DNALI1 (ENSSSCG00000058884) #34	GNL2 (ENSSSCG00000031631) #35	RSPO1 (ENSSSCG00000032240) #36	C1orf109 (ENSSSCG00000039905) #37
Chacoan peccary	MODERN SPECIES	39	NCDN (ENSCWAG00000009618) #8	TFAP2E (ENSCWAG00000009465) #9	PSMB2 (ENSCWAG00000009415) #10	C1orf216 (ENSCWAG00000009403) #11	CLSPN (ENSCWAG00000009253) #12	ENSCWAG00000009201	AGO4 (ENSCWAG00000009127) #14	AGO1 (ENSCWAG00000009026) #15	ENSCWAG00000008976	ENSCWAG00000008735 #16	TEKT2 (ENSCWAG00000008694) #17	ADPRS (ENSCWAG00000008618) #18	COL8A2 (ENSCWAG00000008567) #19	TRAPPC3 (ENSCWAG00000008474) #20	MAP7D1 (ENSCWAG00000008245) #21	THRAP3 (ENSCWAG00000008133) #22	ENSCWAG00000008017	EVA1B (ENSCWAG00000007937) #24	STK40 (ENSCWAG00000007890) #25	LSM10 (ENSCWAG00000007870) #26	OSCP1 (ENSCWAG00000007749) #27	MRPS15 (ENSCWAG00000007709) #28	CSF3R (ENSCWAG00000007434) #29	GRIK3 (ENSCWAG00000007280) #30	ENSCWAG00000007239 #31	MEAF6 (ENSCWAG00000007151) #32	SNIP1 (ENSCWAG00000007114) #33	DNALI1 (ENSCWAG00000007051) #34	GNL2 (ENSCWAG00000007009) #35	RSPO1 (ENSCWAG00000006919) #36	C1orf109 (ENSCWAG00000006887) #37
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Cetacea	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.g #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.g #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.g #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Dolphin	MODERN SPECIES	740							CLSPN (ENSTTRG00000015081) #12	AGO4 (ENSTTRG00000015086) #14	AGO1 (ENSTTRG00000015088) #15	AGO3 (ENSTTRG00000015092) #16	TEKT2 (ENSTTRG00000015093) #17	ADPRS (ENSTTRG00000015096) #18	COL8A2 (ENSTTRG00000015097) #19	TRAPPC3 (ENSTTRG00000015098) #20	MAP7D1 (ENSTTRG00000015100) #21	THRAP3 (ENSTTRG00000015101) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.g #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000154717.ib	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Vaquita	MODERN SPECIES		KIAA0319L (ENSPSNG00000014729) #7	NCDN (ENSPSNG00000014884) #8	TFAP2E (ENSPSNG00000015021) #9	PSMB2 (ENSPSNG00000015130) #10	C1orf216 (ENSPSNG00000015213) #11	CLSPN (ENSPSNG00000015267) #12	AGO4 (ENSPSNG00000015400) #14	AGO1 (ENSPSNG00000015633) #15	AGO3 (ENSPSNG00000015767) #16	ENSPSNG00000015925	TEKT2 (ENSPSNG00000016008) #17	ADPRS (ENSPSNG00000016066) #18	COL8A2 (ENSPSNG00000016120) #19	TRAPPC3 (ENSPSNG00000016166) #20	MAP7D1 (ENSPSNG00000016291) #21	THRAP3 (ENSPSNG00000016451) #22	ENSPSNG00000016520	EVA1B (ENSPSNG00000016616) #24	STK40 (ENSPSNG00000016665) #25	LSM10 (ENSPSNG00000016792) #26	OSCP1 (ENSPSNG00000016833) #27	ENSPSNG00000017018 #28	CSF3R (ENSPSNG00000017067) #29	GRIK3 (ENSPSNG00000017499) #30	ENSPSNG00000017843	ZC3H12A (ENSPSNG00000017941) #31	MEAF6 (ENSPSNG00000018028) #32	SNIP1 (ENSPSNG00000018177) #33	DNALI1 (ENSPSNG00000018223) #34	GNL2 (ENSPSNG00000018313) #35	RSPO1 (ENSPSNG00000018411) #36
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.g #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000154717.ib	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Narwhal	MODERN SPECIES	304	KIAA0319L (ENSMMNG00015009434) #7	NCDN (ENSMMNG00015009414) #8	TFAP2E (ENSMMNG00015009400) #9	PSMB2 (ENSMMNG00015009386) #10	C1orf216 (ENSMMNG00015009379) #11	CLSPN (ENSMMNG00015009362) #12	AGO1 (ENSMMNG00015009304) #15	AGO4 (ENSMMNG00015009235) #14	ENSMMNG00015009200	ENSMMNG00015009194	TEKT2 (ENSMMNG00015009187) #17	ADPRS (ENSMMNG00015009176) #18	COL8A2 (ENSMMNG00015009172) #19	TRAPPC3 (ENSMMNG00015009162) #20	MAP7D1 (ENSMMNG00015009143) #21	THRAP3 (ENSMMNG00015009123) #22	ENSMMNG00015009102	EVA1B (ENSMMNG00015009093) #24	STK40 (ENSMMNG00015009085) #25	LSM10 (ENSMMNG00015009078) #26	OSCP1 (ENSMMNG00015009023) #27	MRPS15 (ENSMMNG00015009004) #28	CSF3R (ENSMMNG00015008991) #29	GRIK3 (ENSMMNG00015008981) #30	ZC3H12A (ENSMMNG00015008939) #31	MEAF6 (ENSMMNG00015008912) #32	SNIP1 (ENSMMNG00015008842) #33	DNALI1 (ENSMMNG00015008824) #34	GNL2 (ENSMMNG00015008807) #35	RSPO1 (ENSMMNG00015008781) #36	C1orf109 (ENSMMNG00015008763) #37
Beluga whale	MODERN SPECIES	74	ZMYM4 (ENSDLEG00000020543)	KIAA0319L (ENSDLEG00000020588) #7	NCDN (ENSDLEG00000020601) #8	TFAP2E (ENSDLEG00000020609) #9	PSMB2 (ENSDLEG00000020616) #10	CUNH1orf216 (ENSDLEG00000020623) #11	CLSPN (ENSDLEG00000020638) #12	AGO4 (ENSDLEG00000020706) #14	AGO1 (ENSDLEG00000020718) #15	AGO3 (ENSDLEG00000020726) #16	ENSDLEG00000020733	TEKT2 (ENSDLEG00000020737) #17	COL8A2 (ENSDLEG00000020743) #19	TRAPPC3 (ENSDLEG00000020746) #20	MAP7D1 (ENSDLEG00000020755) #21	THRAP3 (ENSDLEG00000020766) #22	ENSDLEG00000020772	EVA1B (ENSDLEG00000020774) #24	STK40 (ENSDLEG00000020778) #25	LSM10 (ENSDLEG00000020785) #26	OSCP1 (ENSDLEG00000020789) #27	ENSDLEG00000020797 #28	CSF3R (ENSDLEG00000020804) #29	GRIK3 (ENSDLEG00000020811) #30	ENSDLEG00000020819	ZC3H12A (ENSDLEG00000020831) #31	MEAF6 (ENSDLEG00000020839) #32	SNIP1 (ENSDLEG00000020851) #33	DNALI1 (ENSDLEG00000020862) #34	GNL2 (ENSDLEG00000007944) #35	RSPO1 (ENSDLEG00000007971) #36
Sperm whale	MODERN SPECIES	540																THRAP3 (ENSPCTG00005012128) #22
Blue whale	MODERN SPECIES		KIAA0319L (ENSBMSG00010000897) #7	NCDN (ENSBMSG00010000921) #8	TFAP2E (ENSBMSG00010000953) #9	PSMB2 (ENSBMSG00010000988) #10	C1orf216 (ENSBMSG00010001008) #11	CLSPN (ENSBMSG00010001054) #12	AGO4 (ENSBMSG00010001125) #14	AGO1 (ENSBMSG00010001153) #15	AGO3 (ENSBMSG00010001203) #16	ENSBMSG00010001236	TEKT2 (ENSBMSG00010001253) #17	ADPRS (ENSBMSG00010001262) #18	COL8A2 (ENSBMSG00010001272) #19	TRAPPC3 (ENSBMSG00010001294) #20	MAP7D1 (ENSBMSG00010001348) #21	THRAP3 (ENSBMSG00010001398) #22	EVA1B (ENSBMSG00010001412) #24	STK40 (ENSBMSG00010001425) #25	ENSBMSG00010001447 #26	OSCP1 (ENSBMSG00010001473) #27	MRPS15 (ENSBMSG00010001557) #28	CSF3R (ENSBMSG00010001575) #29	GRIK3 (ENSBMSG00010001634) #30	ZC3H12A (ENSBMSG00010001681) #31	ENSBMSG00010001718 #32	SNIP1 (ENSBMSG00010001754) #33	DNALI1 (ENSBMSG00010001767) #34	GNL2 (ENSBMSG00010001802) #35	RSPO1 (ENSBMSG00010001901) #36	C1orf109 (ENSBMSG00010001923) #37	CDCA8 (ENSBMSG00010001930)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Yarkand deer	MODERN SPECIES	12	TFAP2E (ENSCHYG00000027065) #9	PSMB2 (ENSCHYG00000027060) #10	C1orf216 (ENSCHYG00000027059) #11	CLSPN (ENSCHYG00000027053) #12	ENSCHYG00000027052	AGO4 (ENSCHYG00000027041) #14	ENSCHYG00000027036	AGO3 (ENSCHYG00000027029) #16	ENSCHYG00000027026	TEKT2 (ENSCHYG00000027024) #17	ADPRS (ENSCHYG00000027021) #18	COL8A2 (ENSCHYG00000027017) #19	TRAPPC3 (ENSCHYG00000027012) #20	MAP7D1 (ENSCHYG00000027002) #21	ENSCHYG00000026996	THRAP3 (ENSCHYG00000026991) #22	SH3D21 (ENSCHYG00000026983) #23	EVA1B (ENSCHYG00000026978) #24	STK40 (ENSCHYG00000026974) #25	LSM10 (ENSCHYG00000026972) #26	OSCP1 (ENSCHYG00000026967) #27	MRPS15 (ENSCHYG00000026961) #28	CSF3R (ENSCHYG00000026959) #29	GRIK3 (ENSCHYG00000026942) #30	ENSCHYG00000026936	ZC3H12A (ENSCHYG00000026932) #31	SNIP1 (ENSCHYG00000026912) #33	DNALI1 (ENSCHYG00000026895) #34	GNL2 (ENSCHYG00000026865) #35	RSPO1 (ENSCHYG00000026851) #36	C1orf109 (ENSCHYG00000026846) #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Bos	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Hybrid Bos Indicus	MODERN SPECIES	22	KIAA0319L (ENSBIXG00005026746) #7	TFAP2E (ENSBIXG00005026820) #9	PSMB2 (ENSBIXG00005026844) #10	C1orf216 (ENSBIXG00005026857) #11	CLSPN (ENSBIXG00005004592) #12	ENSBIXG00005026903	ENSBIXG00005026911	AGO1 (ENSBIXG00005026944) #15	ENSBIXG00005026966	AGO3 (ENSBIXG00005027246) #16	ENSBIXG00005005614	TEKT2 (ENSBIXG00005027402) #17	COL8A2 (ENSBIXG00005027444) #19	TRAPPC3 (ENSBIXG00005007591) #20	MAP7D1 (ENSBIXG00005027608) #21	THRAP3 (ENSBIXG00005027648) #22	ENSBIXG00005004754 #23	EVA1B (ENSBIXG00005027691) #24	STK40 (ENSBIXG00005027735) #25	LSM10 (ENSBIXG00005027748) #26	OSCP1 (ENSBIXG00005027790) #27	MRPS15 (ENSBIXG00005027828) #28	CSF3R (ENSBIXG00005027869) #29	GRIK3 (ENSBIXG00005027987) #30	ZC3H12A (ENSBIXG00005028023) #31	SNIP1 (ENSBIXG00005028139) #33	DNALI1 (ENSBIXG00005028180) #34	GNL2 (ENSBIXG00005028205) #35	RSPO1 (ENSBIXG00005028242) #36	C1orf109 (ENSBIXG00005028256) #37	CDCA8 (ENSBIXG00005007599)
Cow	MODERN SPECIES	22	KIAA0319L (ENSBTAG00000016694) #7	NCDN (ENSBTAG00000016696) #8	TFAP2E (ENSBTAG00000001959) #9	PSMB2 (ENSBTAG00000002377) #10	C3H1orf216 (ENSBTAG00000038292) #11	CLSPN (ENSBTAG00000002826) #12	AGO4 (ENSBTAG00000015220) #14	AGO1 (ENSBTAG00000012253) #15	AGO3 (ENSBTAG00000018324) #16	ENSBTAG00000055249	TEKT2 (ENSBTAG00000021714) #17	ADPRS (ENSBTAG00000021715) #18	COL8A2 (ENSBTAG00000010175) #19	TRAPPC3 (ENSBTAG00000005732) #20	MAP7D1 (ENSBTAG00000030301) #21	THRAP3 (ENSBTAG00000024095) #22	SH3D21 (ENSBTAG00000038617) #23	EVA1B (ENSBTAG00000014358) #24	STK40 (ENSBTAG00000015969) #25	LSM10 (ENSBTAG00000024096) #26	OSCP1 (ENSBTAG00000007994) #27	MRPS15 (ENSBTAG00000024097) #28	CSF3R (ENSBTAG00000013334) #29	GRIK3 (ENSBTAG00000009269) #30	ZC3H12A (ENSBTAG00000011316) #31	MEAF6 (ENSBTAG00000010506) #32	SNIP1 (ENSBTAG00000016852) #33	DNALI1 (ENSBTAG00000002583) #34	GNL2 (ENSBTAG00000003849) #35	RSPO1 (ENSBTAG00000003837) #36	C3H1orf109 (ENSBTAG00000014325) #37
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Wild yak	MODERN SPECIES	504	TFAP2E (ENSBMUG00000021558) #9	PSMB2 (ENSBMUG00000021571) #10	ENSBMUG00000021576	C1orf216 (ENSBMUG00000021588) #11	CLSPN (ENSBMUG00000021706) #12	AGO4 (ENSBMUG00000021730) #14	AGO1 (ENSBMUG00000021749) #15	AGO3 (ENSBMUG00000021761) #16	ENSBMUG00000021797	ENSBMUG00000021805	TEKT2 (ENSBMUG00000021822) #17	ADPRS (ENSBMUG00000021835) #18	COL8A2 (ENSBMUG00000021845) #19	TRAPPC3 (ENSBMUG00000021877) #20	MAP7D1 (ENSBMUG00000021965) #21	THRAP3 (ENSBMUG00000022036) #22	SH3D21 (ENSBMUG00000022061) #23	EVA1B (ENSBMUG00000022076) #24	STK40 (ENSBMUG00000022119) #25	LSM10 (ENSBMUG00000022140) #26	NPHP4 (ENSBMUG00000000118)	KCNAB2 (ENSBMUG00000000324)	CHD5 (ENSBMUG00000000423)	RPL22 (ENSBMUG00000000473)	RNF207 (ENSBMUG00000000544)	ICMT (ENSBMUG00000000568)	GPR153 (ENSBMUG00000000578)	ACOT7 (ENSBMUG00000000671)	ENSBMUG00000000699	ENSBMUG00000000714	ENSBMUG00000000737
Domestic yak	MODERN SPECIES	22	TFAP2E (ENSBGRG00000010881) #9	PSMB2 (ENSBGRG00000010708) #10	C1orf216 (ENSBGRG00000010647) #11	CLSPN (ENSBGRG00000010482) #12	ENSBGRG00000010448	AGO1 (ENSBGRG00000010203) #15	ENSBGRG00000010165	AGO4 (ENSBGRG00000009562) #14	ENSBGRG00000009506	TEKT2 (ENSBGRG00000009332) #17	ADPRS (ENSBGRG00000009212) #18	COL8A2 (ENSBGRG00000009153) #19	TRAPPC3 (ENSBGRG00000009085) #20	MAP7D1 (ENSBGRG00000008399) #21	ENSBGRG00000008330	THRAP3 (ENSBGRG00000008220) #22	SH3D21 (ENSBGRG00000008077) #23	ENSBGRG00000008041 #24	STK40 (ENSBGRG00000007897) #25	LSM10 (ENSBGRG00000007878) #26	OSCP1 (ENSBGRG00000007695) #27	CSF3R (ENSBGRG00000007254) #29	ENSBGRG00000007155	GRIK3 (ENSBGRG00000006888) #30	ZC3H12A (ENSBGRG00000006725) #31	SNIP1 (ENSBGRG00000006583) #33	DNALI1 (ENSBGRG00000006531) #34	GNL2 (ENSBGRG00000006437) #35	RSPO1 (ENSBGRG00000006342) #36	C1orf109 (ENSBGRG00000006278) #37	CDCA8 (ENSBGRG00000006243)
American bison	MODERN SPECIES	3081	KIAA0319L (ENSBBBG00000008471) #7	NCDN (ENSBBBG00000021563) #8	ENSBBBG00000021575 #9	PSMB2 (ENSBBBG00000021588) #10	C1orf216 (ENSBBBG00000021593) #11	CLSPN (ENSBBBG00000021717) #12	AGO4 (ENSBBBG00000021763) #14	AGO1 (ENSBBBG00000021806) #15	AGO3 (ENSBBBG00000008372) #16	ENSBBBG00000007681	TEKT2 (ENSBBBG00000021903) #17	ADPRS (ENSBBBG00000021910) #18	COL8A2 (ENSBBBG00000021919) #19	TRAPPC3 (ENSBBBG00000021943) #20	MAP7D1 (ENSBBBG00000022091) #21	THRAP3 (ENSBBBG00000022137) #22	ENSBBBG00000022154 #23	EVA1B (ENSBBBG00000007200) #24	STK40 (ENSBBBG00000022179) #25	LSM10 (ENSBBBG00000022186) #26	OSCP1 (ENSBBBG00000022249) #27	MRPS15 (ENSBBBG00000022276) #28	CSF3R (ENSBBBG00000005872) #29	GRIK3 (ENSBBBG00000022330) #30
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737.j #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Goat	MODERN SPECIES	22	KIAA0319L (ENSCHIG00000020470) #7	ENSCHIG00000016571	NCDN (ENSCHIG00000026559) #8	TFAP2E (ENSCHIG00000021809) #9	PSMB2 (ENSCHIG00000016929) #10	C1orf216 (ENSCHIG00000008904) #11	CLSPN (ENSCHIG00000023309) #12	AGO4 (ENSCHIG00000026564) #14	ENSCHIG00000011848 #15	AGO3 (ENSCHIG00000011536) #16	TEKT2 (ENSCHIG00000026732) #17	ADPRS (ENSCHIG00000011636) #18	COL8A2 (ENSCHIG00000023849) #19	TRAPPC3 (ENSCHIG00000015948) #20	MAP7D1 (ENSCHIG00000003118) #21	THRAP3 (ENSCHIG00000022784) #22	ENSCHIG00000018156 #23	EVA1B (ENSCHIG00000011422) #24	STK40 (ENSCHIG00000020883) #25	LSM10 (ENSCHIG00000009398) #26	OSCP1 (ENSCHIG00000012198) #27	ENSCHIG00000016923 #28	CSF3R (ENSCHIG00000006768) #29	GRIK3 (ENSCHIG00000021730) #30	ZC3H12A (ENSCHIG00000021957) #31	MEAF6 (ENSCHIG00000002979) #32	SNIP1 (ENSCHIG00000013452) #33	DNALI1 (ENSCHIG00000007466) #34	GNL2 (ENSCHIG00000015731) #35	RSPO1 (ENSCHIG00000023675) #36	C1orf109 (ENSCHIG00000011969) #37
Rambouillet Sheep	MODERN SPECIES		KIAA0319L (ENSOARG00020010426) #7	NCDN (ENSOARG00020010602) #8	TFAP2E (ENSOARG00020010658) #9	PSMB2 (ENSOARG00020010787) #10	C1orf216 (ENSOARG00020010859) #11	CLSPN (ENSOARG00020010932) #12	AGO4 (ENSOARG00020012103) #14	AGO1 (ENSOARG00020012325) #15	AGO3 (ENSOARG00020012702) #16	ENSOARG00020012933	TEKT2 (ENSOARG00020012976) #17	ADPRS (ENSOARG00020013078) #18	COL8A2 (ENSOARG00020013134) #19	TRAPPC3 (ENSOARG00020013190) #20	MAP7D1 (ENSOARG00020013418) #21	THRAP3 (ENSOARG00020013606) #22	ENSOARG00020013812 #23	EVA1B (ENSOARG00020014434) #24	STK40 (ENSOARG00020014470) #25	LSM10 (ENSOARG00020014526) #26	OSCP1 (ENSOARG00020014556) #27	MRPS15 (ENSOARG00020014966) #28	CSF3R (ENSOARG00020015107) #29	GRIK3 (ENSOARG00020015177) #30	ZC3H12A (ENSOARG00020015441) #31	MEAF6 (ENSOARG00020015561) #32	SNIP1 (ENSOARG00020015736) #33	DNALI1 (ENSOARG00020015777) #34	GNL2 (ENSOARG00020015915) #35	RSPO1 (ENSOARG00020016022) #36	C1orf109 (ENSOARG00020016199) #37
Siberian musk deer	MODERN SPECIES	4	KIAA0319L (ENSMMSG00000009718) #7	NCDN (ENSMMSG00000009667) #8	TFAP2E (ENSMMSG00000009625) #9	PSMB2 (ENSMMSG00000009599) #10	C1orf216 (ENSMMSG00000009587) #11	CLSPN (ENSMMSG00000009515) #12	AGO4 (ENSMMSG00000009404) #14	AGO1 (ENSMMSG00000009238) #15	AGO3 (ENSMMSG00000009092) #16	ENSMMSG00000009060	TEKT2 (ENSMMSG00000008997) #17	ADPRS (ENSMMSG00000008967) #18	COL8A2 (ENSMMSG00000008947) #19	TRAPPC3 (ENSMMSG00000008867) #20	MAP7D1 (ENSMMSG00000008733) #21	THRAP3 (ENSMMSG00000008671) #22	SH3D21 (ENSMMSG00000008627) #23	EVA1B (ENSMMSG00000008604) #24	STK40 (ENSMMSG00000008536) #25	LSM10 (ENSMMSG00000008521) #26	OSCP1 (ENSMMSG00000008440) #27	MRPS15 (ENSMMSG00000008409) #28	CSF3R (ENSMMSG00000008372) #29	GRIK3 (ENSMMSG00000008231) #30	ZC3H12A (ENSMMSG00000008185) #31	MEAF6 (ENSMMSG00000008080) #32	ENSMMSG00000008041 #33	DNALI1 (ENSMMSG00000007981) #34	GNL2 (ENSMMSG00000007948) #35	RSPO1 (ENSMMSG00000007885) #36	C1orf109 (ENSMMSG00000007865) #37
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00640000091536 #10	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00390000012030.a	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Arabian camel	MODERN SPECIES	4	SFPQ (ENSCDRG00005021228)	ZMYM4 (ENSCDRG00005021241)	KIAA0319L (ENSCDRG00005021261) #7	NCDN (ENSCDRG00005021273) #8	PSMB2 (ENSCDRG00005021286) #10	CLSPN (ENSCDRG00005021303) #12	AGO4 (ENSCDRG00005021335) #14	AGO1 (ENSCDRG00005006649) #15	AGO3 (ENSCDRG00005006758) #16	ENSCDRG00005006892	TEKT2 (ENSCDRG00005007020) #17	ADPRS (ENSCDRG00005007072) #18	COL8A2 (ENSCDRG00005007112) #19	TRAPPC3 (ENSCDRG00005007149) #20	MAP7D1 (ENSCDRG00005007249) #21	THRAP3 (ENSCDRG00005008001) #22	ENSCDRG00005008118 #23	EVA1B (ENSCDRG00005008175) #24	STK40 (ENSCDRG00005008254) #25	LSM10 (ENSCDRG00005008343) #26	OSCP1 (ENSCDRG00005008387) #27	MRPS15 (ENSCDRG00005008579) #28	CSF3R (ENSCDRG00005008687) #29	GRIK3 (ENSCDRG00005008818) #30	ZC3H12A (ENSCDRG00005008948) #31	MEAF6 (ENSCDRG00005009070) #32	SNIP1 (ENSCDRG00005009364) #33	DNALI1 (ENSCDRG00005009434) #34	GNL2 (ENSCDRG00005009550) #35	RSPO1 (ENSCDRG00005009641) #36	C1orf109 (ENSCDRG00005009761) #37
Alpaca	MODERN SPECIES	5398																THRAP3 (ENSVPAG00000004656) #22
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Felidae	ANCESTRAL SPECIES	18	ENSGT00940000157613 #7	ENSGT00910000144152.b.b.b ##13	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000157613 #7	ENSGT00910000144152.b.b.b ##13	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00940000157613 #7	ENSGT00910000144152.b.b.b ##13	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
lion	MODERN SPECIES	8	KIAA0319L (ENSPLOG00000022058) #7	NCDN (ENSPLOG00000022040) #8	TFAP2E (ENSPLOG00000022025) #9	PSMB2 (ENSPLOG00000022003) #10	C1orf216 (ENSPLOG00000021988) #11	ENSPLOG00000021982	CLSPN (ENSPLOG00000021959) #12	AGO1 (ENSPLOG00000021894) #15	AGO4 (ENSPLOG00000021693) #14	ENSPLOG00000021615	TEKT2 (ENSPLOG00000021579) #17	ADPRS (ENSPLOG00000021546) #18	COL8A2 (ENSPLOG00000021527) #19	TRAPPC3 (ENSPLOG00000021495) #20	MAP7D1 (ENSPLOG00000021300) #21	THRAP3 (ENSPLOG00000021215) #22	ENSPLOG00000021161	EVA1B (ENSPLOG00000021132) #24	STK40 (ENSPLOG00000021083) #25	ENSPLOG00000021048 #26	OSCP1 (ENSPLOG00000020969) #27	MRPS15 (ENSPLOG00000020901) #28	CSF3R (ENSPLOG00000020805) #29	GRIK3 (ENSPLOG00000020707) #30	ZC3H12A (ENSPLOG00000020649) #31	MEAF6 (ENSPLOG00000020523) #32	SNIP1 (ENSPLOG00000020485) #33	DNALI1 (ENSPLOG00000020424) #34	GNL2 (ENSPLOG00000020381) #35	RSPO1 (ENSPLOG00000020291) #36	C1orf109 (ENSPLOG00000020230) #37
leopard	MODERN SPECIES	130	KIAA0319L (ENSPPRG00000012492) #7	ENSPPRG00000011950 ##13	NCDN (ENSPPRG00000010663) #8	TFAP2E (ENSPPRG00000010109) #9	PSMB2 (ENSPPRG00000009440) #10	C1orf216 (ENSPPRG00000015355) #11	CLSPN (ENSPPRG00000008963) #12	AGO4 (ENSPPRG00000006520) #14	AGO1 (ENSPPRG00000006475) #15	AGO3 (ENSPPRG00000005934) #16	TEKT2 (ENSPPRG00000005344) #17	ADPRS (ENSPPRG00000004988) #18	COL8A2 (ENSPPRG00000004825) #19	TRAPPC3 (ENSPPRG00000004660) #20	MAP7D1 (ENSPPRG00000003580) #21	THRAP3 (ENSPPRG00000001735) #22	SH3D21 (ENSPPRG00000001082) #23	EVA1B (ENSPPRG00000023067) #24	STK40 (ENSPPRG00000023089) #25	LSM10 (ENSPPRG00000014619) #26	OSCP1 (ENSPPRG00000024092) #27	MRPS15 (ENSPPRG00000024277) #28	CSF3R (ENSPPRG00000024429) #29	ENSPPRG00000019275	GRIK3 (ENSPPRG00000017558) #30	ZC3H12A (ENSPPRG00000014359) #31	MEAF6 (ENSPPRG00000012769) #32	SNIP1 (ENSPPRG00000011313) #33	DNALI1 (ENSPPRG00000010993) #34	GNL2 (ENSPPRG00000010528) #35	RSPO1 (ENSPPRG00000009901) #36
Tiger	MODERN SPECIES	383	ZMYM4 (ENSPTIG00000008677)	KIAA0319L (ENSPTIG00000011048) #7	NCDN (ENSPTIG00000012074) #8	TFAP2E (ENSPTIG00000014612) #9	PSMB2 (ENSPTIG00000015407) #10	C1orf216 (ENSPTIG00000003921) #11	CLSPN (ENSPTIG00000016555) #12	AGO4 (ENSPTIG00000020262) #14	AGO1 (ENSPTIG00000020991) #15	AGO3 (ENSPTIG00000001029) #16	TEKT2 (ENSPTIG00000009996) #17	ADPRS (ENSPTIG00000010575) #18	COL8A2 (ENSPTIG00000011151) #19	TRAPPC3 (ENSPTIG00000011666) #20	MAP7D1 (ENSPTIG00000012934) #21	THRAP3 (ENSPTIG00000016888) #22	SH3D21 (ENSPTIG00000017828) #23	ENSPTIG00000020226	STK40 (ENSPTIG00000020622) #25	LSM10 (ENSPTIG00000004613) #26	OSCP1 (ENSPTIG00000021848) #27	MRPS15 (ENSPTIG00000022020) #28	CSF3R (ENSPTIG00000002473) #29	ENSPTIG00000009786	GRIK3 (ENSPTIG00000010943) #30	ZC3H12A (ENSPTIG00000012943) #31	MEAF6 (ENSPTIG00000013885) #32	SNIP1 (ENSPTIG00000014216) #33	DNALI1 (ENSPTIG00000014464) #34	GNL2 (ENSPTIG00000015095) #35	RSPO1 (ENSPTIG00000015434) #36
Cat	MODERN SPECIES	239	KIAA0319L (ENSFCAG00000013873) #7	ENSFCAG00000038220 ##13	NCDN (ENSFCAG00000013876) #8	TFAP2E (ENSFCAG00000013878) #9	PSMB2 (ENSFCAG00000030845) #10	CC1H1orf216 (ENSFCAG00000013881) #11	CLSPN (ENSFCAG00000013882) #12	AGO4 (ENSFCAG00000006218) #14	AGO1 (ENSFCAG00000000746) #15	AGO3 (ENSFCAG00000000747) #16	TEKT2 (ENSFCAG00000012461) #17	ADPRS (ENSFCAG00000012465) #18	COL8A2 (ENSFCAG00000042990) #19	TRAPPC3 (ENSFCAG00000043644) #20	MAP7D1 (ENSFCAG00000012469) #21	THRAP3 (ENSFCAG00000014127) #22	SH3D21 (ENSFCAG00000051592) #23	EVA1B (ENSFCAG00000026800) #24	STK40 (ENSFCAG00000005262) #25	LSM10 (ENSFCAG00000047113) #26	OSCP1 (ENSFCAG00000005258) #27	MRPS15 (ENSFCAG00000005265) #28	CSF3R (ENSFCAG00000013269) #29	ENSFCAG00000029626	GRIK3 (ENSFCAG00000005150) #30	ZC3H12A (ENSFCAG00000008757) #31	MEAF6 (ENSFCAG00000038230) #32	SNIP1 (ENSFCAG00000008758) #33	DNALI1 (ENSFCAG00000008759) #34	GNL2 (ENSFCAG00000008760) #35	RSPO1 (ENSFCAG00000008761) #36
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000156221.a	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738.k #12	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Dog	MODERN SPECIES	6	ZMYM6 (ENSCAFG00845015247)	ZMYM1 (ENSCAFG00845015149)	ENSCAFG00845015011	ZMYM4 (ENSCAFG00845014825)	KIAA0319L (ENSCAFG00845014738) #7	NCDN (ENSCAFG00845014699) #8	TFAP2E (ENSCAFG00845014665) #9	PSMB2 (ENSCAFG00845014631) #10	C15H1orf216 (ENSCAFG00845014608) #11	CLSPN (ENSCAFG00845014565) #12	AGO1 (ENSCAFG00845030992) #15	AGO3 (ENSCAFG00845030956) #16	ADPRHL2 (ENSCAFG00845030916) #17	COL8A2 (ENSCAFG00845030898) #19	TRAPPC3 (ENSCAFG00845030892) #20	THRAP3 (ENSCAFG00845030875) #22	ENSCAFG00845030851 #24	ENSCAFG00845030827 #23	ENSCAFG00845030799 #21	STK40 (ENSCAFG00845030786) #25	LSM10 (ENSCAFG00845030776) #26	OSCP1 (ENSCAFG00845030771) #27	ENSCAFG00845030768 #28	CSF3R (ENSCAFG00845030757) #29	GRIK3 (ENSCAFG00845030735) #30	ZC3H12A (ENSCAFG00845030728) #31	MEAF6 (ENSCAFG00845030711) #32	SNIP1 (ENSCAFG00845030697) #33	DNALI1 (ENSCAFG00845030680) #34	GNL2 (ENSCAFG00845030665) #35	RSPO1 (ENSCAFG00845030653) #36
Dingo	MODERN SPECIES	344	ENSCAFG00020010702	ZMYM4 (ENSCAFG00020009999)	KIAA0319L (ENSCAFG00020009949) #7	NCDN (ENSCAFG00020009945) #8	TFAP2E (ENSCAFG00020009931) #9	PSMB2 (ENSCAFG00020009927) #10	ENSCAFG00020009913 #11	ENSCAFG00020009910 #12	AGO1 (ENSCAFG00020009251) #15	AGO3 (ENSCAFG00020009051) #16	TEKT2 (ENSCAFG00020009035) #17	ADPRS (ENSCAFG00020009028) #18	COL8A2 (ENSCAFG00020009026) #19	TRAPPC3 (ENSCAFG00020009022) #20	MAP7D1 (ENSCAFG00020009006) #21	THRAP3 (ENSCAFG00020008982) #22	ENSCAFG00020008975 #24	SH3D21 (ENSCAFG00020008955) #23	STK40 (ENSCAFG00020008930) #25	LSM10 (ENSCAFG00020008920) #26	OSCP1 (ENSCAFG00020008914) #27	MRPS15 (ENSCAFG00020008912) #28	CSF3R (ENSCAFG00020008854) #29	ENSCAFG00020008853	GRIK3 (ENSCAFG00020008653) #30	ZC3H12A (ENSCAFG00020008620) #31	MEAF6 (ENSCAFG00020008613) #32	ENSCAFG00020008608 #32	SNIP1 (ENSCAFG00020008599) #33	DNALI1 (ENSCAFG00020008587) #34	GNL2 (ENSCAFG00020008050) #35
Red fox	MODERN SPECIES	9	KIAA0319L (ENSVVUG00000000742) #7	NCDN (ENSVVUG00000000730) #8	PSMB2 (ENSVVUG00000000594) #10	CUNH1orf216 (ENSVVUG00000000576) #11	ENSVVUG00000000567 #12	ENSVVUG00000000502 #12	ENSVVUG00000000479 #14	ENSVVUG00000000465 #14	AGO1 (ENSVVUG00000000405) #15	AGO3 (ENSVVUG00000000362) #16	ENSVVUG00000000300 #17	ADPRS (ENSVVUG00000000243) #18	COL8A2 (ENSVVUG00000000223) #19	TRAPPC3 (ENSVVUG00000000193) #20	MAP7D1 (ENSVVUG00000000164) #21	THRAP3 (ENSVVUG00000000118) #22	SH3D21 (ENSVVUG00000023237) #23	ENSVVUG00000023229	STK40 (ENSVVUG00000023215) #25	LSM10 (ENSVVUG00000023209) #26	OSCP1 (ENSVVUG00000023202) #27	MRPS15 (ENSVVUG00000023194) #28	CSF3R (ENSVVUG00000023189) #29	GRIK3 (ENSVVUG00000023178) #30	ZC3H12A (ENSVVUG00000023171) #31	MEAF6 (ENSVVUG00000023163) #32	SNIP1 (ENSVVUG00000023160) #33	DNALI1 (ENSVVUG00000023159) #34	GNL2 (ENSVVUG00000023157) #35	RSPO1 (ENSVVUG00000023149) #36	CUNH1orf109 (ENSVVUG00000023148) #37
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
American mink	MODERN SPECIES	99	SFPQ (ENSNVIG00000011654)	ZMYM4 (ENSNVIG00000011677)	KIAA0319L (ENSNVIG00000011748) #7	NCDN (ENSNVIG00000011790) #8	TFAP2E (ENSNVIG00000011827) #9	PSMB2 (ENSNVIG00000011855) #10	CA216 (ENSNVIG00000011868) #11	CLSPN (ENSNVIG00000011881) #12	AGO1 (ENSNVIG00000012004) #15	ENSNVIG00000012133 #16	TEKT2 (ENSNVIG00000012158) #17	ADPRS (ENSNVIG00000012218) #18	COL8A2 (ENSNVIG00000012227) #19	TPPC3 (ENSNVIG00000012239) #20	MAP7D1 (ENSNVIG00000012295) #21	THRAP3 (ENSNVIG00000012429) #22	ENSNVIG00000012530 #23	EVA1B (ENSNVIG00000012547) #24	STK40 (ENSNVIG00000012562) #25	LSM10 (ENSNVIG00000012589) #26	OSCP1 (ENSNVIG00000012600) #27	ENSNVIG00000012683 #28	CSF3R (ENSNVIG00000012698) #29	GRIK3 (ENSNVIG00000012775) #30	ZC3H12A (ENSNVIG00000012804) #31	MEAF6 (ENSNVIG00000012809) #32	SNIP1 (ENSNVIG00000012822) #33	DNALI1 (ENSNVIG00000012831) #34	GNL2 (ENSNVIG00000012836) #35	RSPO1 (ENSNVIG00000012862) #36	C1orf109 (ENSNVIG00000012887) #37
Ferret	MODERN SPECIES	167	KIAA0319L (ENSMPUG00000014917) #7	NCDN (ENSMPUG00000014913) #8	TFAP2E (ENSMPUG00000014894) #9	PSMB2 (ENSMPUG00000014891) #10	C1orf216 (ENSMPUG00000018596) #11	CLSPN (ENSMPUG00000014881) #12	AGO4 (ENSMPUG00000014876) #14	AGO1 (ENSMPUG00000014872) #15	ENSMPUG00000014871 #16	TEKT2 (ENSMPUG00000014823) #17	ADPRS (ENSMPUG00000014821) #18	COL8A2 (ENSMPUG00000014818) #19	TRAPPC3 (ENSMPUG00000014815) #20	ENSMPUG00000018594	MAP7D1 (ENSMPUG00000014812) #21	THRAP3 (ENSMPUG00000014809) #22	ENSMPUG00000014783 #23	EVA1B (ENSMPUG00000014781) #24	STK40 (ENSMPUG00000014777) #25	LSM10 (ENSMPUG00000018593) #26	OSCP1 (ENSMPUG00000014774) #27	CSF3R (ENSMPUG00000014768) #29	GRIK3 (ENSMPUG00000014760) #30	ZC3H12A (ENSMPUG00000014758) #31	MEAF6 (ENSMPUG00000014722) #32	SNIP1 (ENSMPUG00000014718) #33	DNALI1 (ENSMPUG00000014714) #34	GNL2 (ENSMPUG00000014709) #35	RSPO1 (ENSMPUG00000014706) #36	C1orf109 (ENSMPUG00000014702) #37	CDCA8 (ENSMPUG00000014699)
Ursidae	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.f #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Ursus	ANCESTRAL SPECIES		ENSGT00940000157613 #7	ENSGT00940000168628	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.f #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808.a #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Polar bear	MODERN SPECIES	189	NCDN (ENSUMAG00000007557) #8	TFAP2E (ENSUMAG00000007555) #9	PSMB2 (ENSUMAG00000007547) #10	C1orf216 (ENSUMAG00000007539) #11	ENSUMAG00000007536 #12	ENSUMAG00000007529 #12	AGO4 (ENSUMAG00000006297) #14	AGO1 (ENSUMAG00000002480) #15	ENSUMAG00000002065 #16	ENSUMAG00000002033 #16	TEKT2 (ENSUMAG00000002004) #17	ADPRS (ENSUMAG00000001988) #18	COL8A2 (ENSUMAG00000001984) #19	TRAPPC3 (ENSUMAG00000001979) #20	MAP7D1 (ENSUMAG00000001773) #21	THRAP3 (ENSUMAG00000001744) #22	ENSUMAG00000001726 #23	STK40 (ENSUMAG00000001453) #25	LSM10 (ENSUMAG00000001438) #26	ENSUMAG00000001369 #27	MRPS15 (ENSUMAG00000001358) #28	CSF3R (ENSUMAG00000001333) #29	GRIK3 (ENSUMAG00000001150) #30	ZC3H12A (ENSUMAG00000001122) #31	MEAF6 (ENSUMAG00000001101) #32	SNIP1 (ENSUMAG00000001093) #33	DNALI1 (ENSUMAG00000001085) #34	GNL2 (ENSUMAG00000000413) #35	RSPO1 (ENSUMAG00000000320) #36	C1orf109 (ENSUMAG00000000310) #37	CDCA8 (ENSUMAG00000000303)
American black bear	MODERN SPECIES	2000																THRAP3 (ENSUAMG00000015685) #22	ENSUAMG00000015686 #23	EVA1B (ENSUAMG00000015687) #24	STK40 (ENSUAMG00000015688) #25
Giant Panda	DUPLICATION
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	11	KIAA0319L (ENSAMEG00000000737) #7	NCDN (ENSAMEG00000000724) #8	TFAP2E (ENSAMEG00000028474) #9	PSMB2 (ENSAMEG00000000715) #10	C1orf216 (ENSAMEG00000018544) #11	CLSPN (ENSAMEG00000000679) #12	AGO4 (ENSAMEG00000000573) #14	AGO1 (ENSAMEG00000000504) #15	AGO3 (ENSAMEG00000000497) #16	TEKT2 (ENSAMEG00000000473) #17	ADPRS (ENSAMEG00000025564) #18	COL8A2 (ENSAMEG00000000461) #19	TRAPPC3 (ENSAMEG00000000457) #20	MAP7D1 (ENSAMEG00000000412) #21	ENSAMEG00000024644 #22	ENSAMEG00000028122 #22	ENSAMEG00000001385 #23	EVA1B (ENSAMEG00000031396) #24	STK40 (ENSAMEG00000001415) #25	LSM10 (ENSAMEG00000019854) #26	OSCP1 (ENSAMEG00000001437) #27	MRPS15 (ENSAMEG00000001463) #28	CSF3R (ENSAMEG00000001480) #29	GRIK3 (ENSAMEG00000001517) #30	ZC3H12A (ENSAMEG00000000991) #31	MEAF6 (ENSAMEG00000027272) #32	SNIP1 (ENSAMEG00000001009) #33	DNALI1 (ENSAMEG00000001019) #34	GNL2 (ENSAMEG00000001032) #35	RSPO1 (ENSAMEG00000027319) #36	C1orf109 (ENSAMEG00000001077) #37
Giant Panda	MODERN SPECIES	11	ZMYM4 (ENSAMEG00000000760)	KIAA0319L (ENSAMEG00000000737) #7	NCDN (ENSAMEG00000000724) #8	TFAP2E (ENSAMEG00000028474) #9	PSMB2 (ENSAMEG00000000715) #10	C1orf216 (ENSAMEG00000018544) #11	CLSPN (ENSAMEG00000000679) #12	AGO4 (ENSAMEG00000000573) #14	AGO1 (ENSAMEG00000000504) #15	AGO3 (ENSAMEG00000000497) #16	TEKT2 (ENSAMEG00000000473) #17	ADPRS (ENSAMEG00000025564) #18	COL8A2 (ENSAMEG00000000461) #19	TRAPPC3 (ENSAMEG00000000457) #20	MAP7D1 (ENSAMEG00000000412) #21	ENSAMEG00000024644 #22	ENSAMEG00000028122 #22	ENSAMEG00000001385 #23	EVA1B (ENSAMEG00000031396) #24	STK40 (ENSAMEG00000001415) #25	LSM10 (ENSAMEG00000019854) #26	OSCP1 (ENSAMEG00000001437) #27	MRPS15 (ENSAMEG00000001463) #28	CSF3R (ENSAMEG00000001480) #29	GRIK3 (ENSAMEG00000001517) #30	ZC3H12A (ENSAMEG00000000991) #31	MEAF6 (ENSAMEG00000027272) #32	SNIP1 (ENSAMEG00000001009) #33	DNALI1 (ENSAMEG00000001019) #34	GNL2 (ENSAMEG00000001032) #35	RSPO1 (ENSAMEG00000027319) #36
Giant Panda	MODERN SPECIES	687																ENSAMEG00000028730 #22
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Equus	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT01030000238136	ENSGT00940000159465 #30	ENSGT00940000171437	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35
Horse	MODERN SPECIES	11	ZMYM4 (ENSECAG00000008800)	NCDN (ENSECAG00000008891) #8	KIAA0319L (ENSECAG00000012927) #7	TFAP2E (ENSECAG00000003027) #9	PSMB2 (ENSECAG00000021615) #10	C2H1orf216 (ENSECAG00000005102) #11	CLSPN (ENSECAG00000009472) #12	AGO4 (ENSECAG00000023972) #14	AGO1 (ENSECAG00000024353) #15	AGO3 (ENSECAG00000051188) #16	TEKT2 (ENSECAG00000017670) #17	ADPRS (ENSECAG00000013445) #18	COL8A2 (ENSECAG00000012799) #19	TRAPPC3 (ENSECAG00000012569) #20	MAP7D1 (ENSECAG00000001581) #21	THRAP3 (ENSECAG00000021207) #22	SH3D21 (ENSECAG00000020556) #23	STK40 (ENSECAG00000015678) #25	LSM10 (ENSECAG00000005071) #26	OSCP1 (ENSECAG00000008850) #27	MRPS15 (ENSECAG00000000933) #28	CSF3R (ENSECAG00000013457) #29	ENSECAG00000040086	GRIK3 (ENSECAG00000010275) #30	ENSECAG00000032155	ZC3H12A (ENSECAG00000009562) #31	MEAF6 (ENSECAG00000022449) #32	SNIP1 (ENSECAG00000021869) #33	DNALI1 (ENSECAG00000018337) #34	GNL2 (ENSECAG00000008068) #35	RSPO1 (ENSECAG00000022683) #36
Donkey	MODERN SPECIES	25	ZMYM4 (ENSEASG00005012020)	KIAA0319L (ENSEASG00005012027) #7	NCDN (ENSEASG00005012034) #8	TFAP2E (ENSEASG00005012037) #9	PSMB2 (ENSEASG00005012040) #10	C1orf216 (ENSEASG00005029553) #11	CLSPN (ENSEASG00005012055) #12	AGO4 (ENSEASG00005012079) #14	AGO1 (ENSEASG00005012086) #15	AGO3 (ENSEASG00005012089) #16	TEKT2 (ENSEASG00005012098) #17	ADPRS (ENSEASG00005012163) #18	COL8A2 (ENSEASG00005012168) #19	TRAPPC3 (ENSEASG00005038259) #20	MAP7D1 (ENSEASG00005012176) #21	THRAP3 (ENSEASG00005012182) #22	ENSEASG00005012187 #23	EVA1B (ENSEASG00005012191) #24	STK40 (ENSEASG00005012192) #25	LSM10 (ENSEASG00005031673) #26	OSCP1 (ENSEASG00005012195) #27	MRPS15 (ENSEASG00005032042) #28	CSF3R (ENSEASG00005012209) #29	ENSEASG00005012213	GRIK3 (ENSEASG00005012214) #30	ENSEASG00005012219	MEAF6 (ENSEASG00005012221) #32	SNIP1 (ENSEASG00005012223) #33	DNALI1 (ENSEASG00005024722) #34	GNL2 (ENSEASG00005012227) #35	RSPO1 (ENSEASG00005012231) #36
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Megabat	MODERN SPECIES	1190																THRAP3 (ENSPVAG00000008632) #22	ENSPVAG00000008635 #23	ENSPVAG00000008637 #23	EVA1B (ENSPVAG00000008639) #24	STK40 (ENSPVAG00000008642) #25	LSM10 (ENSPVAG00000008644) #26	OSCP1 (ENSPVAG00000008646) #27	MRPS15 (ENSPVAG00000008648) #28	CSF3R (ENSPVAG00000008650) #29
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Greater horseshoe bat	MODERN SPECIES	27	ZMYM4 (ENSRFEG00010001311)	KIAA0319L (ENSRFEG00010001380) #7	NCDN (ENSRFEG00010001441) #8	TFAP2E (ENSRFEG00010001481) #9	ENSRFEG00010001507 #10	C1orf216 (ENSRFEG00010001522) #11	CLSPN (ENSRFEG00010001591) #12	AGO4 (ENSRFEG00010001742) #14	AGO1 (ENSRFEG00010001802) #15	AGO3 (ENSRFEG00010001891) #16	TEKT2 (ENSRFEG00010001943) #17	ADPRS (ENSRFEG00010001958) #18	COL8A2 (ENSRFEG00010001979) #19	TRAPPC3 (ENSRFEG00010002008) #20	MAP7D1 (ENSRFEG00010002111) #21	THRAP3 (ENSRFEG00010002289) #22	ENSRFEG00010002356	EVA1B (ENSRFEG00010002372) #24	STK40 (ENSRFEG00010002403) #25	LSM10 (ENSRFEG00010002437) #26	OSCP1 (ENSRFEG00010002458) #27	MRPS15 (ENSRFEG00010002496) #28	CSF3R (ENSRFEG00010002521) #29	ENSRFEG00010002566	GRIK3 (ENSRFEG00010002581) #30	ZC3H12A (ENSRFEG00010002614) #31	MEAF6 (ENSRFEG00010002688) #32	SNIP1 (ENSRFEG00010002767) #33	DNALI1 (ENSRFEG00010002793) #34	GNL2 (ENSRFEG00010002826) #35	RSPO1 (ENSRFEG00010002896) #36
Microbat	MODERN SPECIES	1068	ENSMLUG00000026401	KIAA0319L (ENSMLUG00000004024) #7	NCDN (ENSMLUG00000009374) #8	TFAP2E (ENSMLUG00000009852) #9	PSMB2 (ENSMLUG00000009862) #10	C1orf216 (ENSMLUG00000017091) #11	CLSPN (ENSMLUG00000017093) #12	AGO4 (ENSMLUG00000017102) #14	AGO1 (ENSMLUG00000009628) #15	AGO3 (ENSMLUG00000009668) #16	TEKT2 (ENSMLUG00000011491) #17	ADPRS (ENSMLUG00000027862) #18	COL8A2 (ENSMLUG00000011023) #19	TRAPPC3 (ENSMLUG00000002140) #20	MAP7D1 (ENSMLUG00000012362) #21	THRAP3 (ENSMLUG00000006447) #22	ENSMLUG00000006453 #23	ENSMLUG00000006458	EVA1B (ENSMLUG00000024745) #24	STK40 (ENSMLUG00000006463) #25	LSM10 (ENSMLUG00000023895) #26	OSCP1 (ENSMLUG00000006472) #27	MRPS15 (ENSMLUG00000006475) #28	CSF3R (ENSMLUG00000006479) #29
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183163.a.a #22
Common shrew	MODERN SPECIES	9836																THRAP3 (ENSSARG00000006424) #22
Hedgehog	MODERN SPECIES	3679																THRAP3 (ENSEEUG00000004939) #22
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Xenarthra	ANCESTRAL SPECIES	36	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Armadillo	MODERN SPECIES	2908	ZMYM4 (ENSDNOG00000017647)	KIAA0319L (ENSDNOG00000017653) #7	NCDN (ENSDNOG00000017658) #8	TFAP2E (ENSDNOG00000036871) #9	PSMB2 (ENSDNOG00000017663) #10	C1orf216 (ENSDNOG00000017576) #11	CLSPN (ENSDNOG00000015628) #12	AGO4 (ENSDNOG00000015674) #14	AGO1 (ENSDNOG00000008077) #15	AGO3 (ENSDNOG00000008106) #16	TEKT2 (ENSDNOG00000040733) #17	ADPRS (ENSDNOG00000025495) #18	COL8A2 (ENSDNOG00000043920) #19	TRAPPC3 (ENSDNOG00000039424) #20	MAP7D1 (ENSDNOG00000005516) #21	THRAP3 (ENSDNOG00000031470) #22	SH3D21 (ENSDNOG00000023808) #23	EVA1B (ENSDNOG00000010513) #24	ENSDNOG00000023624	STK40 (ENSDNOG00000041875) #25	LSM10 (ENSDNOG00000036662) #26	OSCP1 (ENSDNOG00000040997) #27	MRPS15 (ENSDNOG00000046736) #28	CSF3R (ENSDNOG00000018916) #29	GRIK3 (ENSDNOG00000008042) #30	ZC3H12A (ENSDNOG00000035006) #31	MEAF6 (ENSDNOG00000038956) #32	ENSDNOG00000014381 #33	DNALI1 (ENSDNOG00000031070) #34	ENSDNOG00000016466 #35	RSPO1 (ENSDNOG00000049599) #36
Sloth	MODERN SPECIES	3423																THRAP3 (ENSCHOG00000008973) #22
Afrotheria	ANCESTRAL SPECIES	15	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Tenrec	MODERN SPECIES	3357																THRAP3 (ENSETEG00000003542) #22
Afrotheria_a	ANCESTRAL SPECIES	15	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Elephant	MODERN SPECIES	332	ZMYM4 (ENSLAFG00000007332)	KIAA0319L (ENSLAFG00000007339) #7	NCDN (ENSLAFG00000007345) #8	TFAP2E (ENSLAFG00000029444) #9	PSMB2 (ENSLAFG00000007353) #10	C1orf216 (ENSLAFG00000027891) #11	CLSPN (ENSLAFG00000007905) #12	AGO4 (ENSLAFG00000010394) #14	AGO1 (ENSLAFG00000010835) #15	AGO3 (ENSLAFG00000002744) #16	TEKT2 (ENSLAFG00000017273) #17	ADPRS (ENSLAFG00000017280) #18	ENSLAFG00000030120	TRAPPC3 (ENSLAFG00000009853) #20	MAP7D1 (ENSLAFG00000009850) #21	THRAP3 (ENSLAFG00000009587) #22	ENSLAFG00000028055 #23	ENSLAFG00000000070 #23	EVA1B (ENSLAFG00000008194) #24	STK40 (ENSLAFG00000009594) #25	LSM10 (ENSLAFG00000009600) #26	OSCP1 (ENSLAFG00000021988) #27	MRPS15 (ENSLAFG00000011450) #28	CSF3R (ENSLAFG00000014447) #29	GRIK3 (ENSLAFG00000015216) #30	ENSLAFG00000030279	RSPO1 (ENSLAFG00000006813) #36	ZC3H12A (ENSLAFG00000018720) #31	MEAF6 (ENSLAFG00000018721) #32	SNIP1 (ENSLAFG00000030689) #33	DNALI1 (ENSLAFG00000018722) #34
Hyrax	MODERN SPECIES	11665																THRAP3 (ENSPCAG00000008951) #22	ENSPCAG00000008924 #23
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a.i #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a.i #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a.i #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536.a #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a.i #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
koala	MODERN SPECIES	14	ENSPCIG00000005735	KIAA0319L (ENSPCIG00000000705) #7	NCDN (ENSPCIG00000000687) #8	TFAP2E (ENSPCIG00000000674) #9	PSMB2 (ENSPCIG00000000656) #10	ENSPCIG00000000636 #11	CLSPN (ENSPCIG00000000623) #12	AGO4 (ENSPCIG00000000092) #14	AGO1 (ENSPCIG00000000172) #15	AGO3 (ENSPCIG00000000198) #16	TEKT2 (ENSPCIG00000000226) #17	ADPRS (ENSPCIG00000000248) #18	COL8A2 (ENSPCIG00000000274) #19	TRAPPC3 (ENSPCIG00000000307) #20	MAP7D1 (ENSPCIG00000024807) #21	THRAP3 (ENSPCIG00000024805) #22	EVA1B (ENSPCIG00000014860) #24	STK40 (ENSPCIG00000014864) #25	LSM10 (ENSPCIG00000014865) #26	OSCP1 (ENSPCIG00000014866) #27	ENSPCIG00000014874 #29	GRIK3 (ENSPCIG00000014898) #30	ZC3H12A (ENSPCIG00000035700) #31	ENSPCIG00000036821 #32	SNIP1 (ENSPCIG00000000204) #33	DNALI1 (ENSPCIG00000000162) #34	GNL2 (ENSPCIG00000000135) #35	RSPO1 (ENSPCIG00000025743) #36	C1orf109 (ENSPCIG00000025741) #37	CDCA8 (ENSPCIG00000025739)	ENSPCIG00000031448
Common wonbat	MODERN SPECIES	1014	ENSVURG00010004017	SFPQ (ENSVURG00010003967)	ZMYM4 (ENSVURG00010003887)	KIAA0319L (ENSVURG00010003844) #7	NCDN (ENSVURG00010003829) #8	TFAP2E (ENSVURG00010003800) #9	ENSVURG00010003776 #10	C1orf216 (ENSVURG00010003767) #11	CLSPN (ENSVURG00010003394) #12	AGO1 (ENSVURG00010003341) #15	AGO4 (ENSVURG00010003234) #14	TEKT2 (ENSVURG00010003190) #17	ADPRS (ENSVURG00010003186) #18	COL8A2 (ENSVURG00010003181) #19	MAP7D1 (ENSVURG00010003157) #21	THRAP3 (ENSVURG00010003132) #22	ENSVURG00010003118 #24	STK40 (ENSVURG00010003108) #25	LSM10 (ENSVURG00010003089) #26	OSCP1 (ENSVURG00010003056) #27	MRPS15 (ENSVURG00010003030) #28	CSF3R (ENSVURG00010003017) #29	ENSVURG00010002992	GRIK3 (ENSVURG00010002934) #30	ZC3H12A (ENSVURG00010002872) #31	MEAF6 (ENSVURG00010002849) #32	SNIP1 (ENSVURG00010002829) #33	DNALI1 (ENSVURG00010002806) #34	GNL2 (ENSVURG00010002781) #35	RSPO1 (ENSVURG00010002763) #36	C1orf109 (ENSVURG00010002753) #37
Wallaby	MODERN SPECIES	4792																ENSMEUG00000015508 #22
Tasmanian devil	MODERN SPECIES	2	ZMYM4 (ENSSHAG00000016398)	KIAA0319L (ENSSHAG00000016681) #7	NCDN (ENSSHAG00000016854) #8	TFAP2E (ENSSHAG00000016887) #9	PSMB2 (ENSSHAG00000021782) #10	ENSSHAG00000030808 #11	CLSPN (ENSSHAG00000017175) #12	ENSSHAG00000017320 #14	AGO1 (ENSSHAG00000017468) #15	AGO3 (ENSSHAG00000029487) #16	TEKT2 (ENSSHAG00000005473) #17	ADPRS (ENSSHAG00000029452) #18	COL8A2 (ENSSHAG00000017647) #19	ENSSHAG00000023429 #20	MAP7D1 (ENSSHAG00000017810) #21	THRAP3 (ENSSHAG00000017932) #22	EVA1B (ENSSHAG00000017973) #24	STK40 (ENSSHAG00000017985) #25	OSCP1 (ENSSHAG00000021302) #27	LSM10 (ENSSHAG00000022746) #26	MRPS15 (ENSSHAG00000018120) #28	ENSSHAG00000018138 #29	GRIK3 (ENSSHAG00000025082) #30	ZC3H12A (ENSSHAG00000021632) #31	MEAF6 (ENSSHAG00000011910) #32	ENSSHAG00000012118 #33	DNALI1 (ENSSHAG00000012158) #34	GNL2 (ENSSHAG00000012267) #35	RSPO1 (ENSSHAG00000012546) #36	C1orf109 (ENSSHAG00000013153) #37	CDCA8 (ENSSHAG00000028910)
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	ENSMODG00000047620	KIAA0319L (ENSMODG00000017916) #7	NCDN (ENSMODG00000017906) #8	TFAP2E (ENSMODG00000017904) #9	ENSMODG00000017902 #10	ENSMODG00000017899 #11	CLSPN (ENSMODG00000017895) #12	AGO4 (ENSMODG00000017888) #14	AGO1 (ENSMODG00000023335) #15	AGO3 (ENSMODG00000017869) #16	TEKT2 (ENSMODG00000017883) #17	ADPRS (ENSMODG00000017880) #18	COL8A2 (ENSMODG00000047645) #19	TRAPPC3 (ENSMODG00000017848) #20	ENSMODG00000048565 #21	ENSMODG00000017834 #22	ENSMODG00000050671 #22	EVA1B (ENSMODG00000017827) #24	STK40 (ENSMODG00000017824) #25	LSM10 (ENSMODG00000023328) #26	OSCP1 (ENSMODG00000017817) #27	MRPS15 (ENSMODG00000017813) #28	CSF3R (ENSMODG00000017810) #29	GRIK3 (ENSMODG00000017802) #30	ZC3H12A (ENSMODG00000017794) #31	ENSMODG00000017787 #32	SNIP1 (ENSMODG00000017778) #33	DNALI1 (ENSMODG00000047771) #34	GNL2 (ENSMODG00000017773) #35	RSPO1 (ENSMODG00000023326) #36	C1orf109 (ENSMODG00000017765) #37
Opossum	MODERN SPECIES	3	KIAA0319L (ENSMODG00000017916) #7	NCDN (ENSMODG00000017906) #8	TFAP2E (ENSMODG00000017904) #9	ENSMODG00000017902 #10	ENSMODG00000017899 #11	CLSPN (ENSMODG00000017895) #12	AGO4 (ENSMODG00000017888) #14	AGO1 (ENSMODG00000023335) #15	AGO3 (ENSMODG00000017869) #16	TEKT2 (ENSMODG00000017883) #17	ADPRS (ENSMODG00000017880) #18	COL8A2 (ENSMODG00000047645) #19	TRAPPC3 (ENSMODG00000017848) #20	ENSMODG00000048565 #21	ENSMODG00000017834 #22	ENSMODG00000050671 #22	EVA1B (ENSMODG00000017827) #24	STK40 (ENSMODG00000017824) #25	LSM10 (ENSMODG00000023328) #26	OSCP1 (ENSMODG00000017817) #27	MRPS15 (ENSMODG00000017813) #28	CSF3R (ENSMODG00000017810) #29	GRIK3 (ENSMODG00000017802) #30	ZC3H12A (ENSMODG00000017794) #31	ENSMODG00000017787 #32	SNIP1 (ENSMODG00000017778) #33	DNALI1 (ENSMODG00000047771) #34	GNL2 (ENSMODG00000017773) #35	RSPO1 (ENSMODG00000023326) #36	C1orf109 (ENSMODG00000017765) #37	CDCA8 (ENSMODG00000017762)
Opossum	MODERN SPECIES		DSTN (ENSMODG00000005428)	BFSP1 (ENSMODG00000005413)	PCSK2 (ENSMODG00000005404)	OTOR (ENSMODG00000005398)	SNRPB2 (ENSMODG00000005392)	ENSMODG00000005375	ENSMODG00000046291	FLRT3 (ENSMODG00000005288)	ENSMODG00000005277	SEL1L2 (ENSMODG00000005222)	ENSMODG00000005203	ENSMODG00000005209	NDUFAF5 (ENSMODG00000005082)	ESF1 (ENSMODG00000005066)	ENSMODG00000005052 ##22	ENSMODG00000038816 #22	TASP1 (ENSMODG00000005044)	ENSMODG00000023134	ISM1 (ENSMODG00000005022)	SPTLC3 (ENSMODG00000005015)	BTBD3 (ENSMODG00000004924)	ENSMODG00000047165	JAG1 (ENSMODG00000004910)	MKKS (ENSMODG00000004860)	SNAP25 (ENSMODG00000004799)	ANKEF1 (ENSMODG00000004764)	ENSMODG00000049357	ENSMODG00000041990	PAK5 (ENSMODG00000004734)	LAMP5 (ENSMODG00000004711)	PLCB4 (ENSMODG00000004697)
Platypus	MODERN SPECIES	7	ZMYM4 (ENSOANG00000010569)	ENSOANG00000049345	ENSOANG00000010567 #7	NCDN (ENSOANG00000047629) #8	TFAP2E (ENSOANG00000013427) #9	PSMB2 (ENSOANG00000013424) #10	ENSOANG00000002084 #12	AGO4 (ENSOANG00000002082) #14	AGO1 (ENSOANG00000002080) #15	AGO3 (ENSOANG00000002078) #16	TEKT2 (ENSOANG00000002075) #17	ADPRS (ENSOANG00000038562) #18	ENSOANG00000050098 #19	TRAPPC3 (ENSOANG00000002072) #20	MAP7D1 (ENSOANG00000036062) #21	THRAP3 (ENSOANG00000002070) #22	EVA1B (ENSOANG00000038945) #24	STK40 (ENSOANG00000002067) #25	ENSOANG00000042771 #26	OSCP1 (ENSOANG00000002064) #27	MRPS15 (ENSOANG00000042130) #28	ENSOANG00000002062 #29	GRIK3 (ENSOANG00000002061) #30	ZC3H12A (ENSOANG00000002060) #31	MEAF6 (ENSOANG00000002059) #32	SNIP1 (ENSOANG00000036482) #33	DNALI1 (ENSOANG00000002058) #34	GNL2 (ENSOANG00000002057) #35	RSPO1 (ENSOANG00000002054) #36	ENSOANG00000002053 #37	CDCA8 (ENSOANG00000002052)
Sauria	ANCESTRAL SPECIES	23	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Lepidosauria	ANCESTRAL SPECIES	18	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35
Episquamata	ANCESTRAL SPECIES	7	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000165766	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000177851	ENSGT00940000158790	ENSGT00940000154788	ENSGT00940000161351	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214	ENSGT00940000178962	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35
Laterata	ANCESTRAL SPECIES	38	ENSGT00940000158451	ENSGT00940000154576	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000177851	ENSGT00940000158790	ENSGT00940000154788	ENSGT00940000161351	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000165828	ENSGT00940000161371	ENSGT00940000163547	ENSGT00940000159693	ENSGT00940000161163	ENSGT00940000154301	ENSGT00730000111349	ENSGT00390000018895.b	ENSGT00940000155718	ENSGT00940000154383	ENSGT00940000162194	ENSGT00940000160103	ENSGT00940000161782	ENSGT00940000155722
Common wall lizard	MODERN SPECIES	16	RNF19B (ENSPMRG00000017320)	AK2 (ENSPMRG00000017305)	AZIN2 (ENSPMRG00000017278)	NDUFS5 (ENSPMRG00000017266)	MACF1 (ENSPMRG00000011150)	ENSPMRG00000009879	ENSPMRG00000009872	PPIE (ENSPMRG00000009863)	PABPC4 (ENSPMRG00000009846)	HEYL (ENSPMRG00000009840)	NT5C1A (ENSPMRG00000009834)	HPCAL4 (ENSPMRG00000009826)	ENSPMRG00000009813	TRIT1 (ENSPMRG00000009777)	ENSPMRG00000009749	THRAP3 (ENSPMRG00000009720) #22	ENSPMRG00000009697 #23	ENSPMRG00000009683	EIF3I (ENSPMRG00000009668)	ENSPMRG00000009648	FAM167B (ENSPMRG00000009642)	LCK (ENSPMRG00000009632)	HDAC1 (ENSPMRG00000009621)	MARCKSL1 (ENSPMRG00000009613)	TMEM39B (ENSPMRG00000009596)	KHDRBS1 (ENSPMRG00000009579)	PTP4A2 (ENSPMRG00000009551)	ENSPMRG00000009480	ADGRB2 (ENSPMRG00000008643)	ENSPMRG00000008401	PEF1 (ENSPMRG00000008383)
Argentine black and white tegu	MODERN SPECIES	82	AK2 (ENSSMRG00000015914)	AZIN2 (ENSSMRG00000015912)	NDUFS5 (ENSSMRG00000015911)	ENSSMRG00000013690	MACF1 (ENSSMRG00000012094)	ENSSMRG00000012085	ENSSMRG00000012080	PPIE (ENSSMRG00000012079)	PABPC4 (ENSSMRG00000012076)	NT5C1A (ENSSMRG00000012074)	HPCAL4 (ENSSMRG00000012072)	ENSSMRG00000012070	ENSSMRG00000012068	ENSSMRG00000012067	MYCL (ENSSMRG00000012064)	THRAP3 (ENSSMRG00000012062) #22	ENSSMRG00000012059 #23	DCDC2B (ENSSMRG00000012055)	ENSSMRG00000012039	EIF3I (ENSSMRG00000012035)	ENSSMRG00000012034	FAM167B (ENSSMRG00000012033)	LCK (ENSSMRG00000011981)	MARCKSL1 (ENSSMRG00000011980)	HDAC1 (ENSSMRG00000011979)	ENSSMRG00000011976	TMEM39B (ENSSMRG00000011975)	KHDRBS1 (ENSSMRG00000011971)	PTP4A2 (ENSSMRG00000011968)	ENSSMRG00000011964	ADGRB2 (ENSSMRG00000011919)
Toxicofera	ANCESTRAL SPECIES	29	ENSGT00940000158451	ENSGT00940000154576	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000165766	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000158790	ENSGT00940000154788	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214	ENSGT00940000178962	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000158451	ENSGT00940000154576	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000165766	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000158790	ENSGT00940000154788	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214	ENSGT00940000178962	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000159442	ENSGT00390000017974	ENSGT00950000183031.A.a.a.je.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b	ENSGT00530000063402.a	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000008551 #37
Elapidae_a	ANCESTRAL SPECIES	15	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00940000154576	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000165766	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000158790	ENSGT00940000154788	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214.g	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000159442	ENSGT00390000017974	ENSGT00950000183031.A.a.a.je.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b	ENSGT00530000063402.a	ENSGT00940000157291.b	ENSGT00940000157291.a	ENSGT00390000015364.b
Acanthophiinae	ANCESTRAL SPECIES	25	ENSGT00390000004700.a	ENSGT00940000158451	ENSGT00940000154576	ENSGT00950000182995.e.a.a.b	ENSGT00390000002919	ENSGT00940000165766	ENSGT00940000155824.C	ENSGT00940000155272	ENSGT00940000158790	ENSGT00940000154788	ENSGT00390000017767.b.b	ENSGT00940000161166	ENSGT00390000015159.a.a	ENSGT00390000015214.g	ENSGT00940000158613	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000159442	ENSGT00390000017974	ENSGT00950000183031.A.a.a.je.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b	ENSGT00530000063402.a	ENSGT00940000157291.a	ENSGT00390000015364.b	ENSGT00390000008551 #37
Mainland tiger snake	MODERN SPECIES	56	AK2 (ENSNSUG00000012143)	AZIN2 (ENSNSUG00000012144)	NDUFS5 (ENSNSUG00000012150)	ENSNSUG00000012151	ENSNSUG00000012152	ENSNSUG00000012154	ENSNSUG00000012161	ENSNSUG00000012163	PPIE (ENSNSUG00000012164)	PABPC4 (ENSNSUG00000012165)	NT5C1A (ENSNSUG00000012236)	HPCAL4 (ENSNSUG00000012237)	ENSNSUG00000012239	TRIT1 (ENSNSUG00000012240)	MYCL (ENSNSUG00000012241)	THRAP3 (ENSNSUG00000012242) #22	EVA1B (ENSNSUG00000012243) #24	STK40 (ENSNSUG00000012244) #25	LSM10 (ENSNSUG00000012245) #26	OSCP1 (ENSNSUG00000012246) #27	MRPS15 (ENSNSUG00000012248) #28	MYCBP (ENSNSUG00000012250)	RHBDL2 (ENSNSUG00000012251)	ENSNSUG00000012252	UTP11 (ENSNSUG00000000010)	FHL3 (ENSNSUG00000000073)	SF3A3 (ENSNSUG00000000087)	MTF1 (ENSNSUG00000000129)	YRDC (ENSNSUG00000000168)	C1orf109 (ENSNSUG00000000229) #37
Eastern brown snake	MODERN SPECIES	19	RNF19B (ENSPTXG00000000389)	AK2 (ENSPTXG00000000403)	AZIN2 (ENSPTXG00000000420)	NDUFS5 (ENSPTXG00000000796)	MACF1 (ENSPTXG00000001801)	ENSPTXG00000018937	PPIE (ENSPTXG00000018938)	PABPC4 (ENSPTXG00000018939)	NT5C1A (ENSPTXG00000018941)	HPCAL4 (ENSPTXG00000018942)	ENSPTXG00000018943	ENSPTXG00000018944	ENSPTXG00000018945	ENSPTXG00000018946	MYCL (ENSPTXG00000018947)	THRAP3 (ENSPTXG00000018948) #22	EVA1B (ENSPTXG00000018949) #24	STK40 (ENSPTXG00000018950) #25	LSM10 (ENSPTXG00000018951) #26	OSCP1 (ENSPTXG00000018952) #27	MRPS15 (ENSPTXG00000018953) #28	RHBDL2 (ENSPTXG00000018954)	MYCBP (ENSPTXG00000018955)	RRAGC (ENSPTXG00000018956)	ENSPTXG00000018957	UTP11 (ENSPTXG00000018958)	FHL3 (ENSPTXG00000018959)	SF3A3 (ENSPTXG00000018960)	MTF1 (ENSPTXG00000018961)	YRDC (ENSPTXG00000018962)	C1orf109 (ENSPTXG00000018963) #37
Blue-lipped sea krait	MODERN SPECIES	10289																THRAP3 (ENSLLTG00000008517) #22
Indian cobra	MODERN SPECIES	11	FNDC5 (ENSNNAG00000017239)	ENSNNAG00000017227	RNF19B (ENSNNAG00000017199)	AK2 (ENSNNAG00000017179)	AZIN2 (ENSNNAG00000017171)	NDUFS5 (ENSNNAG00000017166)	ENSNNAG00000004759	PPIE (ENSNNAG00000004727)	PABPC4 (ENSNNAG00000004677)	NT5C1A (ENSNNAG00000004580)	ENSNNAG00000004491	ENSNNAG00000004455	ENSNNAG00000004445	ENSNNAG00000004432	MYCL (ENSNNAG00000004422)	THRAP3 (ENSNNAG00000004370) #22	EVA1B (ENSNNAG00000004341) #24	STK40 (ENSNNAG00000004259) #25	LSM10 (ENSNNAG00000004232) #26	OSCP1 (ENSNNAG00000004190) #27	MRPS15 (ENSNNAG00000004174) #28	ENSNNAG00000004155	RHBDL2 (ENSNNAG00000004066)	MYCBP (ENSNNAG00000004022)	ENSNNAG00000003998	ENSNNAG00000003972	UTP11 (ENSNNAG00000003931)	FHL3 (ENSNNAG00000003897)	SF3A3 (ENSNNAG00000003723)	MTF1 (ENSNNAG00000003689)	YRDC (ENSNNAG00000003668)
Lizard	MODERN SPECIES	1093			azin2 (ENSACAG00000003415)	NDUFS5 (ENSACAG00000040066)	ENSACAG00000036031	ENSACAG00000003326	ENSACAG00000002949	ENSACAG00000002816	ENSACAG00000002688	PABPC4 (ENSACAG00000002544)	NT5C1A (ENSACAG00000002502)	HPCAL4 (ENSACAG00000002443)	ENSACAG00000002404	ENSACAG00000002280	ENSACAG00000025431	ENSACAG00000002180 #22	ENSACAG00000045385	ENSACAG00000002145 #24
tuatara	MODERN SPECIES	1024											ENSSPUG00000000939	TRAPPC3 (ENSSPUG00000000968) #20	ENSSPUG00000000984	ENSSPUG00000001000 #21	ENSSPUG00000001075 #21	THRAP3 (ENSSPUG00000001120) #22	EVA1B (ENSSPUG00000001155) #24	STK40 (ENSSPUG00000001174) #25	OSCP1 (ENSSPUG00000001212) #27	ENSSPUG00000001378	MRPS15 (ENSSPUG00000001388) #28	ENSSPUG00000001395 #29	ENSSPUG00000001404 #29	ENSSPUG00000001413
Archelosauria	ANCESTRAL SPECIES	25	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Archosauria	ANCESTRAL SPECIES	22	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Aves	ANCESTRAL SPECIES	28	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Neognathae	ANCESTRAL SPECIES	26	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Neognathae_b	ANCESTRAL SPECIES	26	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Passeriformes	ANCESTRAL SPECIES	23	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Passeriformes_d	ANCESTRAL SPECIES	23	ENSGT00940000155018	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000165614	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00940000164552.f.a	ENSGT00390000015364.b
Passeroidea	ANCESTRAL SPECIES	22	ENSGT00940000165614	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Zebra finch	MODERN SPECIES	16	KIAA0319L (ENSTGUG00000001687) #7	NCDN (ENSTGUG00000001681) #8	TFAP2E (ENSTGUG00000001672) #9	PSMB2 (ENSTGUG00000001663) #10	C1orf216 (ENSTGUG00000029067) #11	CLSPN (ENSTGUG00000001651) #12	AGO4 (ENSTGUG00000024123) #14	ENSTGUG00000021564	AGO1 (ENSTGUG00000001631) #15	AGO3 (ENSTGUG00000014986) #16	TEKT2 (ENSTGUG00000001625) #17	ADPRS (ENSTGUG00000001622) #18	COL8A2 (ENSTGUG00000001619) #19	TRAPPC3 (ENSTGUG00000001616) #20	MAP7D1 (ENSTGUG00000020289) #21	THRAP3 (ENSTGUG00000001606) #22	EVA1B (ENSTGUG00000025865) #24	STK40 (ENSTGUG00000001603) #25	LSM10 (ENSTGUG00000022736) #26	OSCP1 (ENSTGUG00000001590) #27	MRPS15 (ENSTGUG00000024895) #28	CSF3R (ENSTGUG00000001588) #29	GRIK3 (ENSTGUG00000001569) #30	ZC3H12A (ENSTGUG00000026131) #31	MEAF6 (ENSTGUG00000001560) #32	SNIP1 (ENSTGUG00000001544) #33	DNALI1 (ENSTGUG00000001557) #34	GNL2 (ENSTGUG00000001547) #35	RSPO1 (ENSTGUG00000001536) #36	ENSTGUG00000019470	ENSTGUG00000022284
Common canary	MODERN SPECIES	49	NCDN (ENSSCAG00000015432) #8	TFAP2E (ENSSCAG00000015421) #9	PSMB2 (ENSSCAG00000015418) #10	C1orf216 (ENSSCAG00000015416) #11	CLSPN (ENSSCAG00000015411) #12	ENSSCAG00000015409 #14	ENSSCAG00000015404 #14	ENSSCAG00000015403 #15	ENSSCAG00000015399 #15	AGO3 (ENSSCAG00000015396) #16	TEKT2 (ENSSCAG00000015389) #17	ADPRS (ENSSCAG00000015386) #18	COL8A2 (ENSSCAG00000015381) #19	TRAPPC3 (ENSSCAG00000015380) #20	MAP7D1 (ENSSCAG00000015376) #21	THRAP3 (ENSSCAG00000015371) #22	EVA1B (ENSSCAG00000015366) #24	STK40 (ENSSCAG00000015361) #25	OSCP1 (ENSSCAG00000015356) #27	MRPS15 (ENSSCAG00000015349) #28	CSF3R (ENSSCAG00000015342) #29	ENSSCAG00000015339	ENSSCAG00000015337	GRIK3 (ENSSCAG00000015246) #30	ZC3H12A (ENSSCAG00000015215) #31	MEAF6 (ENSSCAG00000015214) #32	DNALI1 (ENSSCAG00000015210) #34	GNL2 (ENSSCAG00000015204) #35	RSPO1 (ENSSCAG00000015200) #36	ENSSCAG00000015197	CDCA8 (ENSSCAG00000015192)
Medium ground finch	MODERN SPECIES	181	TMEM35B (ENSGFOG00000013433)	SFPQ (ENSGFOG00000013419)	ZMYM4 (ENSGFOG00000013027)	KIAA0319L (ENSGFOG00000012978) #7	NCDN (ENSGFOG00000012974) #8	TFAP2E (ENSGFOG00000012972) #9	PSMB2 (ENSGFOG00000012966) #10	CLSPN (ENSGFOG00000012960) #12	AGO4 (ENSGFOG00000012950) #14	AGO1 (ENSGFOG00000012946) #15	AGO3 (ENSGFOG00000012927) #16	TEKT2 (ENSGFOG00000012924) #17	ADPRS (ENSGFOG00000012920) #18	ENSGFOG00000012918 #19	TRAPPC3 (ENSGFOG00000012915) #20	THRAP3 (ENSGFOG00000012887) #22	STK40 (ENSGFOG00000012876) #25	LSM10 (ENSGFOG00000012872) #26	OSCP1 (ENSGFOG00000012865) #27	MRPS15 (ENSGFOG00000012856) #28	CSF3R (ENSGFOG00000012850) #29
Flycatcher	MODERN SPECIES	15	ZMYM4 (ENSFALG00000000734)	ENSFALG00000024613	KIAA0319L (ENSFALG00000000740) #7	NCDN (ENSFALG00000000742) #8	TFAP2E (ENSFALG00000027366) #9	PSMB2 (ENSFALG00000024999) #10	C1orf216 (ENSFALG00000014273) #11	CLSPN (ENSFALG00000000773) #12	AGO1 (ENSFALG00000000790) #15	ADPRS (ENSFALG00000028684) #18	ENSFALG00000023448 #19	TRAPPC3 (ENSFALG00000000832) #20	ENSFALG00000000835	ENSFALG00000000824 #17	MAP7D1 (ENSFALG00000000837) #21	THRAP3 (ENSFALG00000000840) #22	ENSFALG00000028751 #24	STK40 (ENSFALG00000000846) #25	LSM10 (ENSFALG00000028374) #26	OSCP1 (ENSFALG00000000855) #27	MRPS15 (ENSFALG00000000866) #28	CSF3R (ENSFALG00000000875) #29	GRIK3 (ENSFALG00000000886) #30	ZC3H12A (ENSFALG00000000890) #31	MEAF6 (ENSFALG00000000895) #32	SNIP1 (ENSFALG00000000898) #33	DNALI1 (ENSFALG00000000901) #34	GNL2 (ENSFALG00000000909) #35	RSPO1 (ENSFALG00000029044) #36	ENSFALG00000023058	CDCA8 (ENSFALG00000000920)
Great tit	MODERN SPECIES	15	KIAA0319L (ENSPMJG00000006673) #7	NCDN (ENSPMJG00000006675) #8	TFAP2E (ENSPMJG00000006676) #9	PSMB2 (ENSPMJG00000006678) #10	C1orf216 (ENSPMJG00000006680) #11	CLSPN (ENSPMJG00000006682) #12	AGO4 (ENSPMJG00000006688) #14	ENSPMJG00000006707 #15	ENSPMJG00000006708 #15	AGO3 (ENSPMJG00000006709) #16	TEKT2 (ENSPMJG00000006712) #17	ADPRS (ENSPMJG00000006718) #18	COL8A2 (ENSPMJG00000006720) #19	TRAPPC3 (ENSPMJG00000006723) #20	MAP7D1 (ENSPMJG00000006724) #21	THRAP3 (ENSPMJG00000006749) #22	EVA1B (ENSPMJG00000006755) #24	STK40 (ENSPMJG00000006758) #25	LSM10 (ENSPMJG00000006760) #26	OSCP1 (ENSPMJG00000006764) #27	MRPS15 (ENSPMJG00000006766) #28	CSF3R (ENSPMJG00000006768) #29	GRIK3 (ENSPMJG00000006831) #30	ZC3H12A (ENSPMJG00000006834) #31	MEAF6 (ENSPMJG00000006841) #32	SNIP1 (ENSPMJG00000006845) #33	DNALI1 (ENSPMJG00000006847) #34	ENSPMJG00000006852	RSPO1 (ENSPMJG00000006854) #36	ENSPMJG00000006855 #37	CDCA8 (ENSPMJG00000006856)
Neognathae_c	ANCESTRAL SPECIES	31	ENSGT01080000259115	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Kakapo	MODERN SPECIES	6	ENSSHBG00005010707	KIAA0319L (ENSSHBG00005005834) #7	NCDN (ENSSHBG00005005408) #8	TFAP2E (ENSSHBG00005005377) #9	PSMB2 (ENSSHBG00005000735) #10	C1orf216 (ENSSHBG00005000717) #11	CLSPN (ENSSHBG00005000707) #12	AGO4 (ENSSHBG00005019185) #14	AGO1 (ENSSHBG00005017278) #15	AGO3 (ENSSHBG00005017167) #16	TEKT2 (ENSSHBG00005017157) #17	ADPRS (ENSSHBG00005017149) #18	COL8A2 (ENSSHBG00005017145) #19	TRAPPC3 (ENSSHBG00005017143) #20	MAP7D1 (ENSSHBG00005017141) #21	THRAP3 (ENSSHBG00005017133) #22	EVA1B (ENSSHBG00005017124) #24	STK40 (ENSSHBG00005017111) #25	LSM10 (ENSSHBG00005017106) #26	OSCP1 (ENSSHBG00005017104) #27	MRPS15 (ENSSHBG00005017100) #28	CSF3R (ENSSHBG00005017091) #29	GRIK3 (ENSSHBG00005017083) #30	ENSSHBG00005017076 #31	MEAF6 (ENSSHBG00005017069) #32	SNIP1 (ENSSHBG00005017055) #33	DNALI1 (ENSSHBG00005017051) #34	GNL2 (ENSSHBG00005017044) #35	RSPO1 (ENSSHBG00005017035) #36	C1orf109 (ENSSHBG00005017031) #37	CDCA8 (ENSSHBG00005017023)
Golden eagle	MODERN SPECIES	7	ENSACCG00020007509	ENSACCG00020007498	KIAA0319L (ENSACCG00020007466) #7	NCDN (ENSACCG00020007449) #8	TFAP2E (ENSACCG00020007424) #9	PSMB2 (ENSACCG00020007392) #10	CLSPN (ENSACCG00020007318) #12	AGO4 (ENSACCG00020007268) #14	AGO1 (ENSACCG00020007246) #15	AGO3 (ENSACCG00020007221) #16	TEKT2 (ENSACCG00020007198) #17	ADPRS (ENSACCG00020007187) #18	COL8A2 (ENSACCG00020007180) #19	TRAPPC3 (ENSACCG00020007167) #20	MAP7D1 (ENSACCG00020007137) #21	THRAP3 (ENSACCG00020007064) #22	EVA1B (ENSACCG00020007041) #24	STK40 (ENSACCG00020007023) #25	LSM10 (ENSACCG00020007012) #26	OSCP1 (ENSACCG00020016654) #27	MRPS15 (ENSACCG00020016648) #28	CSF3R (ENSACCG00020016644) #29	GRIK3 (ENSACCG00020016533) #30	ZC3H12A (ENSACCG00020016403) #31	MEAF6 (ENSACCG00020016352) #32	SNIP1 (ENSACCG00020016338) #33	DNALI1 (ENSACCG00020016330) #34	GNL2 (ENSACCG00020016319) #35	RSPO1 (ENSACCG00020016309) #36	ENSACCG00020016301	CDCA8 (ENSACCG00020016289)
Galloanserae	ANCESTRAL SPECIES	25	ENSGT00940000165614	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115
Anatidae	ANCESTRAL SPECIES	21	ENSGT01030000238234	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00390000004808 #27	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00390000011115	ENSGT00940000164552	ENSGT00390000016054.b
Pink-footed goose	MODERN SPECIES	73	ENSABRG00000020825	ZMYM4 (ENSABRG00000020832)	ENSABRG00000020838	KIAA0319L (ENSABRG00000020845) #7	NCDN (ENSABRG00000020848) #8	TFAP2E (ENSABRG00000020852) #9	PSMB2 (ENSABRG00000020856) #10	C1orf216 (ENSABRG00000020859) #11	CLSPN (ENSABRG00000020864) #12	AGO3 (ENSABRG00000020889) #16	TEKT2 (ENSABRG00000020906) #17	ADPRS (ENSABRG00000020915) #18	COL8A2 (ENSABRG00000020919) #19	TRAPPC3 (ENSABRG00000020920) #20	MAP7D1 (ENSABRG00000020951) #21	THRAP3 (ENSABRG00000021040) #22	STK40 (ENSABRG00000021045) #25	OSCP1 (ENSABRG00000021050) #27	CSF3R (ENSABRG00000021053) #29	GRIK3 (ENSABRG00000021061) #30	ZC3H12A (ENSABRG00000021065) #31	MEAF6 (ENSABRG00000021072) #32	SNIP1 (ENSABRG00000021080) #33	DNALI1 (ENSABRG00000021085) #34	GNL2 (ENSABRG00000021088) #35	RSPO1 (ENSABRG00000021097) #36	C1orf109 (ENSABRG00000021103) #37	CDCA8 (ENSABRG00000021106)	ENSABRG00000021121	MANEAL (ENSABRG00000021131)	YRDC (ENSABRG00000021137)
Duck	MODERN SPECIES	15	TMEM35B (ENSAPLG00000017324)	ENSAPLG00000003643	ZMYM4 (ENSAPLG00000002899)	ENSAPLG00000018446	KIAA0319L (ENSAPLG00000009379) #7	NCDN (ENSAPLG00000009984) #8	TFAP2E (ENSAPLG00000010002) #9	PSMB2 (ENSAPLG00000010006) #10	CLSPN (ENSAPLG00000011178) #12	AGO4 (ENSAPLG00000010882) #14	AGO1 (ENSAPLG00000010440) #15	AGO3 (ENSAPLG00000009642) #16	TEKT2 (ENSAPLG00000009574) #17	ADPRS (ENSAPLG00000009421) #18	COL8A2 (ENSAPLG00000025608) #19	THRAP3 (ENSAPLG00000009009) #22	EVA1B (ENSAPLG00000025602) #24	STK40 (ENSAPLG00000008561) #25	GRIK3 (ENSAPLG00000007300) #30	ZC3H12A (ENSAPLG00000024542) #31	MEAF6 (ENSAPLG00000007127) #32	DNALI1 (ENSAPLG00000006770) #34	GNL2 (ENSAPLG00000006508) #35	RSPO1 (ENSAPLG00000006500) #36	C1orf109 (ENSAPLG00000024192) #37	CDCA8 (ENSAPLG00000003470)	ENSAPLG00000016384	MANEAL (ENSAPLG00000024518)	YRDC (ENSAPLG00000025208)	MTF1 (ENSAPLG00000016056)	INPP5B (ENSAPLG00000015547)
Phasianidae	ANCESTRAL SPECIES	24	ENSGT00940000165614	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00940000164552
Japanese quail	MODERN SPECIES	15	KIAA0319L (ENSCJPG00005017087) #7	NCDN (ENSCJPG00005017086) #8	ENSCJPG00005017085 #9	ENSCJPG00005017083 #9	PSMB2 (ENSCJPG00005017082) #10	C1orf216 (ENSCJPG00005017080) #11	CLSPN (ENSCJPG00005017068) #12	AGO4 (ENSCJPG00005017064) #14	AGO1 (ENSCJPG00005017061) #15	AGO3 (ENSCJPG00005017055) #16	TEKT2 (ENSCJPG00005017051) #17	ADPRS (ENSCJPG00005017049) #18	COL8A2 (ENSCJPG00005017048) #19	TRAPPC3 (ENSCJPG00005017040) #20	MAP7D1 (ENSCJPG00005017036) #21	THRAP3 (ENSCJPG00005017025) #22	EVA1B (ENSCJPG00005017024) #24	STK40 (ENSCJPG00005017020) #25	LSM10 (ENSCJPG00005017018) #26	OSCP1 (ENSCJPG00005016941) #27	CSF3R (ENSCJPG00005016940) #29	GRIK3 (ENSCJPG00005016444) #30	ZC3H12A (ENSCJPG00005016443) #31	MEAF6 (ENSCJPG00005016442) #32	SNIP1 (ENSCJPG00005016441) #33	DNALI1 (ENSCJPG00005016440) #34	GNL2 (ENSCJPG00005016439) #35	RSPO1 (ENSCJPG00005016438) #36	C1orf109 (ENSCJPG00005016437) #37	MANEAL (ENSCJPG00005016436)	ENSCJPG00005016367
Phasianidae_b	ANCESTRAL SPECIES	23	ENSGT00940000159550	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37	ENSGT00940000164552
Turkey	DUPLICATION
Turkey	MODERN SPECIES	17	ENSMGAG00000019449	ENSMGAG00000021640	DNALI1 (ENSMGAG00000003325) #34	ENSMGAG00000003267 #35	RSPO1 (ENSMGAG00000003245) #36	ENSMGAG00000003330 #33	ENSMGAG00000003361 #32	ENSMGAG00000003371 #31	ENSMGAG00000003413 #30	CSF3R (ENSMGAG00000003526) #29	ENSMGAG00000003573 #27	ENSMGAG00000003562 #28	ENSMGAG00000015707 #26	ENSMGAG00000003614 #25	ENSMGAG00000018617 #24	ENSMGAG00000003640 #22	ENSMGAG00000021587 #22	ENSMGAG00000003386 #21	ENSMGAG00000003713 #20	ENSMGAG00000021309 #19	ENSMGAG00000003732 #18	TEKT2 (ENSMGAG00000003750) #17	AGO1 (ENSMGAG00000003822) #15	ENSMGAG00000019105 #14	ENSMGAG00000003851 #16	ENSMGAG00000018964 #12	ENSMGAG00000003920 #12	ENSMGAG00000003986 #10	ENSMGAG00000004014 #9	ENSMGAG00000004027 #8	ENSMGAG00000004047 #7
Turkey	MODERN SPECIES	17	ENSMGAG00000021640	DNALI1 (ENSMGAG00000003325) #34	ENSMGAG00000003267 #35	RSPO1 (ENSMGAG00000003245) #36	ENSMGAG00000003330 #33	ENSMGAG00000003361 #32	ENSMGAG00000003371 #31	ENSMGAG00000003413 #30	CSF3R (ENSMGAG00000003526) #29	ENSMGAG00000003573 #27	ENSMGAG00000003562 #28	ENSMGAG00000015707 #26	ENSMGAG00000003614 #25	ENSMGAG00000018617 #24	ENSMGAG00000003640 #22	ENSMGAG00000021587 #22	ENSMGAG00000003386 #21	ENSMGAG00000003713 #20	ENSMGAG00000021309 #19	ENSMGAG00000003732 #18	TEKT2 (ENSMGAG00000003750) #17	AGO1 (ENSMGAG00000003822) #15	ENSMGAG00000019105 #14	ENSMGAG00000003851 #16	ENSMGAG00000018964 #12	ENSMGAG00000003920 #12	ENSMGAG00000003986 #10	ENSMGAG00000004014 #9	ENSMGAG00000004027 #8	ENSMGAG00000004047 #7	ZMYM4 (ENSMGAG00000004092)
Chicken	MODERN SPECIES	15	IFI27L2 (ENSGALG00010013837)	KIAA0319L (ENSGALG00010013772) #7	NCDN (ENSGALG00010013719) #8	TFAP2E (ENSGALG00010013698) #9	PSMB2 (ENSGALG00010015046) #10	C1orf216 (ENSGALG00010015032) #11	CLSPN (ENSGALG00010015027) #12	AGO4 (ENSGALG00010015009) #14	AGO1 (ENSGALG00010014990) #15	AGO3 (ENSGALG00010014949) #16	TEKT2 (ENSGALG00010014905) #17	ADPRHL2 (ENSGALG00010018267) #18	COL8A2 (ENSGALG00010014897) #19	TRAPPC3 (ENSGALG00010014859) #20	MAP7D1 (ENSGALG00010014806) #21	THRAP3 (ENSGALG00010014795) #22	EVA1B (ENSGALG00010014780) #24	STK40 (ENSGALG00010014762) #25	LSM10 (ENSGALG00010014745) #26	OSCP1 (ENSGALG00010018258) #27	MRPS15 (ENSGALG00010014729) #28	CSF3R (ENSGALG00010014690) #29	GRIK3 (ENSGALG00010016578) #30	ZC3H12A (ENSGALG00010016458) #31	MEAF6 (ENSGALG00010016677) #32	SNIP1 (ENSGALG00010016613) #33	DNALI1 (ENSGALG00010016611) #34	GNL2 (ENSGALG00010016600) #35	RSPO1 (ENSGALG00010013311) #36	C1orf109 (ENSGALG00010013103) #37	ENSGALG00010013302
African ostrich	MODERN SPECIES	893																THRAP3 (ENSSCUG00000013426) #22	STK40 (ENSSCUG00000013432) #25	OSCP1 (ENSSCUG00000013435) #27	MRPS15 (ENSSCUG00000013438) #28	GRIK3 (ENSSCUG00000013440) #30	ENSSCUG00000013445 #31	MEAF6 (ENSSCUG00000013449) #32	SNIP1 (ENSSCUG00000013451) #33	GNL2 (ENSSCUG00000013452) #35	RSPO1 (ENSSCUG00000013457) #36
Australian saltwater crocodile	MODERN SPECIES	58														ENSCPRG00005002419	MAP7D1 (ENSCPRG00005002420) #21	THRAP3 (ENSCPRG00005002448) #22	STK40 (ENSCPRG00005002499) #25	LSM10 (ENSCPRG00005002502) #26	OSCP1 (ENSCPRG00005002504) #27	MRPS15 (ENSCPRG00005002507) #28	ENSCPRG00005002521 #29	GRIK3 (ENSCPRG00005002528) #30	ZC3H12A (ENSCPRG00005002535) #31	MEAF6 (ENSCPRG00005002540) #32	SNIP1 (ENSCPRG00005002543) #33	DNALI1 (ENSCPRG00005002547) #34	GNL2 (ENSCPRG00005002554) #35	RSPO1 (ENSCPRG00005002591) #36	CDCA8 (ENSCPRG00005002599)	C1orf109 (ENSCPRG00005002620) #37	ENSCPRG00005002634
Cryptodira	ANCESTRAL SPECIES	31	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Testudinoidea	ANCESTRAL SPECIES	27	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00390000008551 #37
Goode s thornscrub tortoise	MODERN SPECIES	12	NCDN (ENSGEVG00005006175) #8	TFAP2E (ENSGEVG00005006139) #9	PSMB2 (ENSGEVG00005006128) #10	C1orf216 (ENSGEVG00005006043) #11	CLSPN (ENSGEVG00005005870) #12	AGO4 (ENSGEVG00005005791) #14	AGO1 (ENSGEVG00005005703) #15	AGO3 (ENSGEVG00005005639) #16	TEKT2 (ENSGEVG00005005594) #17	ADPRS (ENSGEVG00005005570) #18	ENSGEVG00005005550 #19	ENSGEVG00005005522 #19	TRAPPC3 (ENSGEVG00005005507) #20	ENSGEVG00005005474	MAP7D1 (ENSGEVG00005005319) #21	THRAP3 (ENSGEVG00005005253) #22	ENSGEVG00005005227	EVA1B (ENSGEVG00005005210) #24	STK40 (ENSGEVG00005005164) #25	LSM10 (ENSGEVG00005005145) #26	OSCP1 (ENSGEVG00005005115) #27	ENSGEVG00005005085	MRPS15 (ENSGEVG00005005058) #28	CSF3R (ENSGEVG00005005019) #29	GRIK3 (ENSGEVG00005004662) #30	ZC3H12A (ENSGEVG00005004569) #31	MEAF6 (ENSGEVG00005004388) #32	SNIP1 (ENSGEVG00005004359) #33	DNALI1 (ENSGEVG00005004338) #34	GNL2 (ENSGEVG00005004309) #35	RSPO1 (ENSGEVG00005004280) #36
Abingdon island giant tortoise	MODERN SPECIES	2577	NCDN (ENSCABG00000007342) #8	TFAP2E (ENSCABG00000007343) #9	PSMB2 (ENSCABG00000007345) #10	C1orf216 (ENSCABG00000007347) #11	CLSPN (ENSCABG00000007352) #12	AGO4 (ENSCABG00000007476) #14	AGO1 (ENSCABG00000013412) #15	ENSCABG00000015096	AGO3 (ENSCABG00000015112) #16	TEKT2 (ENSCABG00000015179) #17	ADPRS (ENSCABG00000015185) #18	COL8A2 (ENSCABG00000015187) #19	TRAPPC3 (ENSCABG00000015191) #20	ENSCABG00000015195	MAP7D1 (ENSCABG00000015201) #21	THRAP3 (ENSCABG00000015214) #22	EVA1B (ENSCABG00000015223) #24	STK40 (ENSCABG00000015228) #25	LSM10 (ENSCABG00000015234) #26	OSCP1 (ENSCABG00000015236) #27	ENSCABG00000015238	MRPS15 (ENSCABG00000015239) #28	CSF3R (ENSCABG00000015240) #29
Emydidae	ANCESTRAL SPECIES	39	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00390000015257 #32	ENSGT00940000156553 #33	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Three-toed box turtle	MODERN SPECIES	111	NCDN (ENSTMTG00000006282) #8	TFAP2E (ENSTMTG00000006307) #9	PSMB2 (ENSTMTG00000006329) #10	C1orf216 (ENSTMTG00000006346) #11	CLSPN (ENSTMTG00000006379) #12	AGO4 (ENSTMTG00000006524) #14	AGO1 (ENSTMTG00000006686) #15	AGO3 (ENSTMTG00000008722) #16	TEKT2 (ENSTMTG00000009035) #17	ADPRS (ENSTMTG00000009056) #18	ENSTMTG00000009071 #19	ENSTMTG00000009081 #19	TRAPPC3 (ENSTMTG00000009095) #20	ENSTMTG00000009113	MAP7D1 (ENSTMTG00000009142) #21	THRAP3 (ENSTMTG00000009191) #22	ENSTMTG00000009216	EVA1B (ENSTMTG00000009227) #24	STK40 (ENSTMTG00000009239) #25	LSM10 (ENSTMTG00000009262) #26	OSCP1 (ENSTMTG00000009274) #27	ENSTMTG00000009300	MRPS15 (ENSTMTG00000009309) #28	ENSTMTG00000009333 #29	GRIK3 (ENSTMTG00000009387) #30	ZC3H12A (ENSTMTG00000009698) #31	MEAF6 (ENSTMTG00000009714) #32	SNIP1 (ENSTMTG00000009743) #33	DNALI1 (ENSTMTG00000009756) #34	GNL2 (ENSTMTG00000009773) #35	RSPO1 (ENSTMTG00000009804) #36
painted turtle	MODERN SPECIES	6	KIAA0319L (ENSCPBG00000018629) #7	NCDN (ENSCPBG00000018626) #8	TFAP2E (ENSCPBG00000018622) #9	PSMB2 (ENSCPBG00000018619) #10	C1orf216 (ENSCPBG00000018616) #11	CLSPN (ENSCPBG00000018609) #12	AGO4 (ENSCPBG00000018602) #14	AGO1 (ENSCPBG00000018594) #15	AGO3 (ENSCPBG00000018583) #16	TEKT2 (ENSCPBG00000018573) #17	ADPRS (ENSCPBG00000018548) #18	COL8A2 (ENSCPBG00000018546) #19	TRAPPC3 (ENSCPBG00000018543) #20	ENSCPBG00000018540	MAP7D1 (ENSCPBG00000018535) #21	THRAP3 (ENSCPBG00000018530) #22	EVA1B (ENSCPBG00000018526) #24	STK40 (ENSCPBG00000018522) #25	OSCP1 (ENSCPBG00000018516) #27	ENSCPBG00000018513	MRPS15 (ENSCPBG00000018508) #28	ENSCPBG00000018503 #29	GRIK3 (ENSCPBG00000018496) #30	ZC3H12A (ENSCPBG00000018492) #31	MEAF6 (ENSCPBG00000018490) #32	SNIP1 (ENSCPBG00000018488) #33	DNALI1 (ENSCPBG00000018486) #34	GNL2 (ENSCPBG00000018483) #35	RSPO1 (ENSCPBG00000018476) #36	C1orf109 (ENSCPBG00000018470) #37	CDCA8 (ENSCPBG00000018466)
Chinese turtle	MODERN SPECIES	1959										TEKT2 (ENSPSIG00000010645) #17	ADPRS (ENSPSIG00000010591) #18	COL8A2 (ENSPSIG00000010582) #19	TRAPPC3 (ENSPSIG00000010573) #20	ENSPSIG00000010432	ENSPSIG00000010418	THRAP3 (ENSPSIG00000010296) #22	ENSPSIG00000010281 #23	EVA1B (ENSPSIG00000010264) #24	STK40 (ENSPSIG00000009955) #25	LSM10 (ENSPSIG00000000590) #26	OSCP1 (ENSPSIG00000009947) #27	MRPS15 (ENSPSIG00000009916) #28	CSF3R (ENSPSIG00000009762) #29	GRIK3 (ENSPSIG00000009454) #30	ZC3H12A (ENSPSIG00000009198) #31	MEAF6 (ENSPSIG00000009138) #32	SNIP1 (ENSPSIG00000009136) #33	DNALI1 (ENSPSIG00000008823) #34	GNL2 (ENSPSIG00000007800) #35	ENSPSIG00000000588	RSPO1 (ENSPSIG00000007793) #36
Anura	ANCESTRAL SPECIES	132	ENSGT00940000157613 #7	ENSGT00390000013601 #8	ENSGT00950000182848.c.b.b.a #9	ENSGT00640000091536 #10	ENSGT00390000001867 #11	ENSGT00390000012738 #12	ENSGT00940000158729 #14	ENSGT00940000158568 #15	ENSGT00940000155256 #16	ENSGT00950000182894.D #17	ENSGT00390000015369 #18	ENSGT00940000154317.a.a #19	ENSGT00390000003880.b.a #20	ENSGT00940000164972	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000158915 #29	ENSGT00390000001737 #28	ENSGT00390000004808 #27	ENSGT00510000048364 #26	ENSGT00950000182986.b #25	ENSGT00940000154096.b.b.b.b.b ##24
Frog	MODERN SPECIES	2	ncdn (ENSXETG00000009669) #8	tfap2e (ENSXETG00000027719) #9	c1orf216 (ENSXETG00000009667) #11	ago4 (ENSXETG00000009664) #14	clspn (ENSXETG00000009662) #12	psmb2 (ENSXETG00000009668) #10	ago1 (ENSXETG00000004364) #15	ago3 (ENSXETG00000042716) #16	tekt2 (ENSXETG00000004373) #17	adprs (ENSXETG00000004374) #18	col8a2 (ENSXETG00000004376) #19	trappc3 (ENSXETG00000004378) #20	ENSXETG00000004379	map7d1 (ENSXETG00000004382) #21	ENSXETG00000047207	thrap3 (ENSXETG00000003925) #22	sh3d21 (ENSXETG00000030848) #23	csf3r (ENSXETG00000003916) #29	zbtb8b (ENSXETG00000003914)	nipal3 (ENSXETG00000003907)	stpg1 (ENSXETG00000031811)	grhl3 (ENSXETG00000003899)	cyp4f2 (ENSXETG00000027109)	ENSXETG00000037297	ifnlr1 (ENSXETG00000031947)	il22ra1 (ENSXETG00000048975)	myom3 (ENSXETG00000005275)	XB5907626 [provisional:fabp1] (ENSXETG00000005274)	srsf10 (ENSXETG00000036317)	pnrc2 (ENSXETG00000046314)	cnr2 (ENSXETG00000005272)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000002106	RSPO1 (ENSLLEG00000002099) #36	GNL2 (ENSLLEG00000001992) #35	ENSLLEG00000001946	ENSLLEG00000001934	ENSLLEG00000001930	ENSLLEG00000001896	ENSLLEG00000001882	COL8A2 (ENSLLEG00000001867) #19	TRAPPC3 (ENSLLEG00000001844) #20	ENSLLEG00000001831	ENSLLEG00000001791	ENSLLEG00000001767	MAP7D1 (ENSLLEG00000001739) #21	ENSLLEG00000001718	THRAP3 (ENSLLEG00000001669) #22	ENSLLEG00000001645	ENSLLEG00000001593 #23	ENSLLEG00000001571	CSF3R (ENSLLEG00000001535) #29	MRPS15 (ENSLLEG00000001489) #28	OSCP1 (ENSLLEG00000001452) #27	ENSLLEG00000001440	LSM10 (ENSLLEG00000001424) #26	STK40 (ENSLLEG00000001376) #25	ENSLLEG00000001354 ##24	ENSLLEG00000001334	ENSLLEG00000001308	ENSLLEG00000001154	ENSLLEG00000001122	ENSLLEG00000001118
Coelacanth	MODERN SPECIES	249	NCDN (ENSLACG00000015791) #8	TFAP2E (ENSLACG00000015883) #9	PSMB2 (ENSLACG00000016163) #10	C1orf216 (ENSLACG00000016550) #11	CLSPN (ENSLACG00000016826) #12	AGO4 (ENSLACG00000016888) #14	AGO1 (ENSLACG00000017009) #15	TEKT2 (ENSLACG00000017301) #17	ADPRS (ENSLACG00000017349) #18	ENSLACG00000017370	COL8A2 (ENSLACG00000017396) #19	TRAPPC3 (ENSLACG00000017830) #20	angpt2b (ENSLACG00000017925)	ENSLACG00000017969	MAP7D1 (ENSLACG00000018102) #21	THRAP3 (ENSLACG00000018229) #22	ENSLACG00000018225	eva1ba (ENSLACG00000022189) ##24	CHD1 (ENSLACG00000018415)	ENSLACG00000018455	RGMB (ENSLACG00000018463)
Actinopterygii	ANCESTRAL SPECIES	153												ENSGT00940000163282	ENSGT00940000157531	ENSGT00940000159398	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000161202	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00990000203803	ENSGT00810000125524 #35	ENSGT00940000158871 #36
Neopterygii	ANCESTRAL SPECIES	56														ENSGT00940000159398	ENSGT00950000182941.a.a.b #21	ENSGT00950000183163.a.a #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00510000048364 #26	ENSGT00390000004808 #27	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00950000183199.a.b	ENSGT00940000163576	ENSGT00940000161202	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b	ENSGT00940000160262	ENSGT00940000162179.e.a.b	ENSGT00390000001737 #28
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	4											ENSGT00940000166920	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00990000203803	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00950000183028.a.b.a	ENSGT00390000005813	ENSGT00940000165372
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000158787	ENSGT00940000159442	ENSGT01030000235133	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a	ENSGT00940000156592
Otomorpha	ANCESTRAL SPECIES	109														ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Clupeiformes	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00390000015257.c #32	ENSGT00390000003012 #34	ENSGT00810000125524 #35	ENSGT00940000158871 #36	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a	ENSGT00940000156592
Atlantic herring	MODERN SPECIES	2	akirin1 (ENSCHAG00000016529)	rhbdl2 (ENSCHAG00000016567)	pou3f1 (ENSCHAG00000016607)	utp11 (ENSCHAG00000016611)	FHL3 (ENSCHAG00000016623)	MEAF6 (ENSCHAG00000016643) #32	ENSCHAG00000016660	dnali1 (ENSCHAG00000016663) #34	gnl2 (ENSCHAG00000016691) #35	ENSCHAG00000016810	ENSCHAG00000016824	rspo1 (ENSCHAG00000016833) #36	snip1 (ENSCHAG00000016834)	MAP3K6 (ENSCHAG00000016845)	map7d1a (ENSCHAG00000017603) #21	THRAP3 (ENSCHAG00000017660) #22	sh3d21 (ENSCHAG00000017676) #23	eva1ba (ENSCHAG00000017699) ##24	STK40 (ENSCHAG00000017718) #25	OSCP1 (ENSCHAG00000017793) #27	mrps15 (ENSCHAG00000017903) #28	ENSCHAG00000017916	ENSCHAG00000017931	csf3r (ENSCHAG00000017945) #29	GRIK3 (ENSCHAG00000018120) #30	ZC3H12A (ENSCHAG00000020414) #31	ENSCHAG00000000349	INPP5B (ENSCHAG00000001030)	mtf1 (ENSCHAG00000002640)	yrdc (ENSCHAG00000002890)	MANEAL (ENSCHAG00000002914)
Denticle herring	MODERN SPECIES	15	cyb5r4 (ENSDCDG00000014749)	sim1a (ENSDCDG00000014778)	ASCC3 (ENSDCDG00000014836)	GRIK2 (ENSDCDG00000014913)	ENSDCDG00000016058	ENSDCDG00000016059	HACE1 (ENSDCDG00000016081)	LIN28B (ENSDCDG00000016121)	bves (ENSDCDG00000016159)	popdc3 (ENSDCDG00000016167)	ENSDCDG00000016171	ENSDCDG00000016180	SNIP1 (ENSDCDG00000016195) #33	MAP3K6 (ENSDCDG00000016278)	map7d1a (ENSDCDG00000016562) #21	THRAP3 (ENSDCDG00000016601) #22	sh3d21 (ENSDCDG00000016619) #23	eva1ba (ENSDCDG00000016622) ##24	STK40 (ENSDCDG00000016626) #25	OSCP1 (ENSDCDG00000016632) #27	mrps15 (ENSDCDG00000016644) #28	csf3r (ENSDCDG00000016649) #29	ENSDCDG00000016659	GRIK3 (ENSDCDG00000016667) #30	ZC3H12A (ENSDCDG00000016680) #31	ENSDCDG00000016681	INPP5B (ENSDCDG00000016709)	mtf1 (ENSDCDG00000017280)	yrdc (ENSDCDG00000017420)	MANEAL (ENSDCDG00000017425)	ENSDCDG00000017438
Otophysi	ANCESTRAL SPECIES	56	ENSGT00950000183053.A.a.b	ENSGT00940000157218.A	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Characiphysae	ANCESTRAL SPECIES		ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Channel catfish	MODERN SPECIES		Ppp1r8 (ENSIPUG00000014723)	themis2 (ENSIPUG00000014758)	Rpa2 (ENSIPUG00000014790)	smpdl3b (ENSIPUG00000014863)	mecr (ENSIPUG00000014921)	LIN28A (ENSIPUG00000014952)	ENSIPUG00000014960	MANEAL (ENSIPUG00000014973)	yrdc (ENSIPUG00000014985)	Mtf1 (ENSIPUG00000015020)	inpp5b (ENSIPUG00000015075)	ENSIPUG00000015128	Zc3h12a (ENSIPUG00000015158) #31	GRIK3 (ENSIPUG00000015183) #30	map7d1 (ENSIPUG00000015269) #21	THRAP3 (ENSIPUG00000015339) #22	Cd2ap (ENSIPUG00000015399) #23	Eva1b (ENSIPUG00000015458) ##24	stk40 (ENSIPUG00000015473) #25	Oscp1 (ENSIPUG00000015510) #27	pl8l1 (ENSIPUG00000015558)	mrps15 (ENSIPUG00000015599) #28	csf3r (ENSIPUG00000015617) #29	ENSIPUG00000015639	SCMH1 (ENSIPUG00000015680)	CITED3 (ENSIPUG00000015725)	ctps1b (ENSIPUG00000015748)	taf12 (ENSIPUG00000015799)	RAB39B (ENSIPUG00000015874)	ENSIPUG00000015908	ptpru (ENSIPUG00000015960)
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Characoidei	ANCESTRAL SPECIES	7						ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Red-bellied piranha	MODERN SPECIES	138									rab42b (ENSPNAG00000014821)	taf12 (ENSPNAG00000003268)	ctps1b (ENSPNAG00000014866)	cited4b (ENSPNAG00000003315)	SCMH1 (ENSPNAG00000014937)	MAP3K6 (ENSPNAG00000004700)	map7d1a (ENSPNAG00000003361) #21	THRAP3 (ENSPNAG00000015136) #22	sh3d21 (ENSPNAG00000015238) #23	eva1ba (ENSPNAG00000015261) ##24	STK40 (ENSPNAG00000015317) #25	OSCP1 (ENSPNAG00000015372) #27	ENSPNAG00000015385	mrps15 (ENSPNAG00000015400) #28	csf3r (ENSPNAG00000015415) #29	GRIK3 (ENSPNAG00000003389) #30	ZC3H12A (ENSPNAG00000015494) #31	ENSPNAG00000015519	INPP5B (ENSPNAG00000015577)	mtf1 (ENSPNAG00000015605)	yrdc (ENSPNAG00000015625)	MANEAL (ENSPNAG00000015638)	LIN28A (ENSPNAG00000015739)
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000012311	leng1 (ENSAMXG00000012294)	RSPO2 (ENSAMXG00000037389)	eif3ea (ENSAMXG00000040417)	emc2 (ENSAMXG00000039406)	ENSAMXG00000040414	ENSAMXG00000032787	ENSAMXG00000001945	rab42b (ENSAMXG00000038342)	taf12 (ENSAMXG00000042121)	ctps1b (ENSAMXG00000001913)	ENSAMXG00000034018	scmh1 (ENSAMXG00000036301)	MAP3K6 (ENSAMXG00000001890)	map7d1a (ENSAMXG00000001876) #21	THRAP3 (ENSAMXG00000001863) #22	sh3d21 (ENSAMXG00000001850) #23	eva1ba (ENSAMXG00000041799) ##24	STK40 (ENSAMXG00000029312) #25	OSCP1 (ENSAMXG00000042434) #27	ENSAMXG00000001798	mrps15 (ENSAMXG00000001781) #28	csf3r (ENSAMXG00000001766) #29	GRIK3 (ENSAMXG00000001749) #30	ENSAMXG00000031100	ENSAMXG00000042004	ZC3H12A (ENSAMXG00000001736) #31	ENSAMXG00000034489	ENSAMXG00000037974	INPP5B (ENSAMXG00000001691)	mtf1 (ENSAMXG00000001644)
Electric eel	MODERN SPECIES	52	SERINC2 (ENSEEEG00000006747)	ENSEEEG00000006746	ENSEEEG00000006744	paqr7b (ENSEEEG00000006743)	ptprub (ENSEEEG00000006734)	ENSEEEG00000006731	rab42b (ENSEEEG00000006729)	taf12 (ENSEEEG00000006728)	ctps1b (ENSEEEG00000006717)	cited4b (ENSEEEG00000006711)	ENSEEEG00000006710	ENSEEEG00000006709	scmh1 (ENSEEEG00000006708)	MAP3K6 (ENSEEEG00000006701)	map7d1a (ENSEEEG00000006695) #21	ENSEEEG00000006694 #22	sh3d21 (ENSEEEG00000006689) #23	eva1ba (ENSEEEG00000006686) ##24	nsun5 (ENSEEEG00000006685)	ripk4 (ENSEEEG00000006681)	zgc:110006 (ENSEEEG00000006680)	SUPT20H (ENSEEEG00000006261)	exosc8 (ENSEEEG00000006234)	alg5 (ENSEEEG00000006226)	ENSEEEG00000006222	rfxap (ENSEEEG00000006221)	SERTM1 (ENSEEEG00000006219)	ccna1 (ENSEEEG00000006207)	sparta (ENSEEEG00000006205)	ENSEEEG00000006204	dclk1a (ENSEEEG00000006202)
Cyprinoidei	ANCESTRAL SPECIES	60	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.a	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000164800	ENSGT00940000164873.f	ENSGT00940000164873.e	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00390000018500.b.b.a	ENSGT00940000155892	ENSGT00940000155619.j.a	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b	ENSGT00950000182991.A.a.c.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	99	ENSGT00950000183053.A.a.b.c	ENSGT00940000157218.A.a	ENSGT01030000234623.a.a.b.a.f	ENSGT00990000203824.a	ENSGT01030000234597.b.a.b.c.a	ENSGT00940000161438.d	ENSGT00940000157151.c.a	ENSGT00940000164800.d	ENSGT00940000164873.e.b	ENSGT00390000002144.fb.b	ENSGT00910000144179.b.b.o.a.c	ENSGT00530000063624.C.b.g	ENSGT00940000157999.`b	ENSGT00940000159398.f	ENSGT00950000182941.a.a.b.e.a.b.b #21	ENSGT00950000183163.a.a.ab.a #22	ENSGT00940000160627.j #23	ENSGT00940000154096.b.b.b.b.b.c ##24	ENSGT00950000182986.b.b #25	ENSGT00390000004808.e.c #27	ENSGT01030000235168.b	ENSGT00390000001737.q #28	ENSGT00390000018500.b.b.a.a	ENSGT00940000155892.e	ENSGT00940000155619.j.a.d	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225.k	ENSGT00940000153801.b.k.b	ENSGT00940000158130.i.b	ENSGT01030000234856
Goldfish	MODERN SPECIES	35	hint3 (ENSCARG00000054332)	rbms3 (ENSCARG00000054410)	TGFBR2 (ENSCARG00000055298)	ENSCARG00000055375	ENSCARG00000055400	ENSCARG00000055444	rab42b (ENSCARG00000055462)	taf12 (ENSCARG00000055487)	ctps1b (ENSCARG00000055537)	ENSCARG00000055671	cited4b (ENSCARG00000049988)	SCMH1 (ENSCARG00000050008)	MAP3K6 (ENSCARG00000050052)	map7d1a (ENSCARG00000050150) #21	ENSCARG00000050384	THRAP3 (ENSCARG00000050399) #22	sh3d21 (ENSCARG00000050454) #23	eva1ba (ENSCARG00000050535) ##24	STK40 (ENSCARG00000050551) #25	OSCP1 (ENSCARG00000050573) #27	mrps15 (ENSCARG00000050614) #28	sh3bp5b (ENSCARG00000050652)	capn7 (ENSCARG00000050670)	ENSCARG00000050729	dpy19l1l (ENSCARG00000050759)	SLC4A7 (ENSCARG00000051769)	ANKRD34A (ENSCARG00000054557)	txnipb (ENSCARG00000054570)	ENSCARG00000054580	ifnlr1 (ENSCARG00000054596)	ENSCARG00000054657
Cyprininae_a	ANCESTRAL SPECIES	192							ENSGT00940000157151.c.a	ENSGT00940000164800.d	ENSGT00940000164873.e.b	ENSGT00390000002144.fb.b	ENSGT00910000144179.b.b.o.a.c	ENSGT00530000063624.C.b.g	ENSGT00940000157999.`b	ENSGT00940000159398.f	ENSGT00950000182941.a.a.b.e.a.b.b #21	ENSGT00950000183163.a.a.ab.a #22	ENSGT00940000160627.j #23	ENSGT00940000154096.b.b.b.b.b.c ##24	ENSGT00950000182986.b.b #25	ENSGT00390000004808.e.c #27	ENSGT01030000235168.b	ENSGT00390000001737.q #28	ENSGT00390000018500.b.b.a.a	ENSGT00940000155892.e	ENSGT00940000155619.j.a.d	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225.k	ENSGT00940000153801.b.k.a	ENSGT00950000183108.b.a.b.c	ENSGT00950000182991.A.a.c.a.b.e
Common carp reference	MODERN SPECIES	2	ENSCCRG00000005202	ENSCCRG00000012346	ENSCCRG00000012366	ENSCCRG00000065016	stmn1b (ENSCCRG00000010471)	paqr7b (ENSCCRG00000067636)	ptprub (ENSCCRG00000011143)	ENSCCRG00000031270	rab42b (ENSCCRG00000006957)	ctps1b (ENSCCRG00000053678)	ENSCCRG00000054658	cited4b (ENSCCRG00000077681)	ENSCCRG00000080902	ENSCCRG00000007359	map7d1a (ENSCCRG00000006475) #21	THRAP3 (ENSCCRG00000008262) #22	sh3d21 (ENSCCRG00000008250) #23	eva1ba (ENSCCRG00000080956) ##24	STK40 (ENSCCRG00000053931) #25	OSCP1 (ENSCCRG00000015603) #27	mrps15 (ENSCCRG00000015732) #28	sh3bp5b (ENSCCRG00000015738)	capn7 (ENSCCRG00000015763)	ENSCCRG00000002746	ENSCCRG00000037667	decr1 (ENSCCRG00000057184)	ENSCCRG00000037627	pnp4b (ENSCCRG00000055203)	ENSCCRG00000002479	ENSCCRG00000053628	aldh5a1 (ENSCCRG00000054694)
Golden-line barbel	MODERN SPECIES	554													SCMH1 (ENSSGRG00000033634)	MAP3K6 (ENSSGRG00000033642)	map7d1a (ENSSGRG00000034182) #21	THRAP3 (ENSSGRG00000034193) #22	sh3d21 (ENSSGRG00000034198) #23	eva1ba (ENSSGRG00000034201) ##24	STK40 (ENSSGRG00000034202) #25	OSCP1 (ENSSGRG00000034217) #27	OSCP1 (ENSSGRG00000034218) #27	ENSSGRG00000034219	mrps15 (ENSSGRG00000034224) #28	sh3bp5b (ENSSGRG00000034229)	capn7 (ENSSGRG00000034342)	ENSSGRG00000034891	ENSSGRG00000034893	ENSSGRG00000034894	PIK3R4 (ENSSGRG00000034920)	decr1 (ENSSGRG00000036119)	CALB1 (ENSSGRG00000036122)
Cyprininae	ANCESTRAL SPECIES	28	ENSGT01030000234623.a.a.b.a.e	ENSGT00990000203824.b	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438.c	ENSGT00940000157151.c.b	ENSGT00940000164800.c	ENSGT00940000164873.f	ENSGT00390000002144.gb	ENSGT00940000164873.e.a	ENSGT00390000002144.fb.a	ENSGT00910000144179.b.b.o.a.d	ENSGT00530000063624.C.b.h	ENSGT00940000157999.z	ENSGT00940000159398.e	ENSGT00950000182941.a.a.b.e.a.b.a #21	ENSGT00950000183163.a.a.ab.b #22	ENSGT00940000160627.i #23	ENSGT00940000154096.b.b.b.b.b.d ##24	ENSGT00950000182986.b.a #25	ENSGT00390000004808.e.d #27	ENSGT01030000235168.a	ENSGT00390000001737.r #28	ENSGT00390000018500.b.b.a.b	ENSGT00940000155892.f	ENSGT00940000155619.j.a.c	ENSGT00390000016225.l	ENSGT00940000153801.b.l	ENSGT00950000183108.b.a.b.d	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00390000014242.l.a	ENSGT00940000161462.d
Goldfish	MODERN SPECIES	7	rhbdl2 (ENSCARG00000012940)	GJA9 (ENSCARG00000012937)	rragca (ENSCARG00000012929)	pou3f1 (ENSCARG00000012924)	utp11 (ENSCARG00000012919)	FHL3 (ENSCARG00000012912)	ptprub (ENSCARG00000009039)	ENSCARG00000008863	rab42b (ENSCARG00000008855)	taf12 (ENSCARG00000008850)	ctps1b (ENSCARG00000008731)	cited4b (ENSCARG00000008702)	SCMH1 (ENSCARG00000008621)	ENSCARG00000007670	map7d1a (ENSCARG00000007511) #21	THRAP3 (ENSCARG00000007470) #22	sh3d21 (ENSCARG00000007452) #23	eva1ba (ENSCARG00000007440) ##24	STK40 (ENSCARG00000007427) #25	OSCP1 (ENSCARG00000007397) #27	ENSCARG00000007365	mrps15 (ENSCARG00000007353) #28	sh3bp5b (ENSCARG00000007340)	capn7 (ENSCARG00000007054)	ENSCARG00000006998	PIK3R4 (ENSCARG00000006883)	decr1 (ENSCARG00000006829)	CALB1 (ENSCARG00000006811)	pnp4b (ENSCARG00000006776)	TDP2 (ENSCARG00000006763)	ENSCARG00000006355
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT01030000234623.a.a.b.a.e	ENSGT00990000203824.b	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438.c	ENSGT00940000157151.c.b	ENSGT00940000164800.c	ENSGT00940000164873.f	ENSGT00390000002144.gb	ENSGT00940000164873.e.a	ENSGT00390000002144.fb.a	ENSGT00910000144179.b.b.o.a.d	ENSGT00530000063624.C.b.h	ENSGT00940000157999.z	ENSGT00940000159398.e	ENSGT00950000182941.a.a.b.e.a.b.a #21	ENSGT00950000183163.a.a.ab.b #22	ENSGT00940000160627.i #23	ENSGT00940000154096.b.b.b.b.b.d ##24	ENSGT00950000182986.b.a #25	ENSGT00390000004808.e.d #27	ENSGT01030000235168.a	ENSGT00390000001737.r #28	ENSGT00390000018500.b.b.a.b	ENSGT00940000155892.f	ENSGT00940000155619.j.a.c	ENSGT00390000016225.l	ENSGT00940000153801.b.l	ENSGT00950000183108.b.a.b.d	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00390000014242.l.a	ENSGT00940000161462.d
Common carp reference	MODERN SPECIES	47	ENSCCRG00000061507	ENSCCRG00000046953	ENSCCRG00000076374	ENSCCRG00000057025	paqr7b (ENSCCRG00000081087)	ptprub (ENSCCRG00000031387)	ENSCCRG00000002646	si:dkey-34d22.2 (ENSCCRG00000046399)	taf12 (ENSCCRG00000058395)	rab42b (ENSCCRG00000073740)	ctps1b (ENSCCRG00000006972)	cited4b (ENSCCRG00000065553)	ENSCCRG00000006980	ENSCCRG00000006540	map7d1a (ENSCCRG00000065527) #21	THRAP3 (ENSCCRG00000051496) #22	sh3d21 (ENSCCRG00000051498) #23	eva1ba (ENSCCRG00000065911) ##24	STK40 (ENSCCRG00000015578) #25	OSCP1 (ENSCCRG00000073652) #27	mrps15 (ENSCCRG00000006421) #28	sh3bp5b (ENSCCRG00000006451)	capn7 (ENSCCRG00000005977)	ENSCCRG00000007312	ENSCCRG00000003522	decr1 (ENSCCRG00000078230)	ENSCCRG00000003497	pnp4b (ENSCCRG00000081736)	ENSCCRG00000033400	ENSCCRG00000002659	aldh5a1 (ENSCCRG00000054852)
Golden-line barbel	MODERN SPECIES	103						paqr7b (ENSSGRG00000018604)	ptprub (ENSSGRG00000014465)	ENSSGRG00000014379	rab42b (ENSSGRG00000014377)	taf12 (ENSSGRG00000014368)	ctps1b (ENSSGRG00000013262)	cited4b (ENSSGRG00000013241)	SCMH1 (ENSSGRG00000013239)	MAP3K6 (ENSSGRG00000013042)	map7d1a (ENSSGRG00000013019) #21	THRAP3 (ENSSGRG00000013014) #22	ENSSGRG00000013011	sh3d21 (ENSSGRG00000013008) #23	eva1ba (ENSSGRG00000013005) ##24	STK40 (ENSSGRG00000012994) #25	OSCP1 (ENSSGRG00000012853) #27	ENSSGRG00000012851	mrps15 (ENSSGRG00000012849) #28	sh3bp5b (ENSSGRG00000012848)	capn7 (ENSSGRG00000012741)	ENSSGRG00000012740	ENSSGRG00000012737	PIK3R4 (ENSSGRG00000011694)	decr1 (ENSSGRG00000011623)	ENSSGRG00000011622	decr1 (ENSSGRG00000011620)
Zebrafish	MODERN SPECIES	7	ENSDARG00000095152	paqr7b (ENSDARG00000034907)	stmn1b (ENSDARG00000033655)	ptprub (ENSDARG00000101081)	ENSDARG00000103181	si:dkey-34d22.2 (ENSDARG00000100379)	ENSDARG00000101352	ENSDARG00000104865	rab42b (ENSDARG00000101170)	taf12 (ENSDARG00000104030)	ctps1b (ENSDARG00000098386)	cited4b (ENSDARG00000101009)	scmh1 (ENSDARG00000104311)	ENSDARG00000104760	map7d1a (ENSDARG00000098802) #21	THRAP3 (ENSDARG00000101989) #22	sh3d21 (ENSDARG00000099448) #23	eva1ba (ENSDARG00000102701) ##24	STK40 (ENSDARG00000098135) #25	OSCP1 (ENSDARG00000101888) #27	mrps15 (ENSDARG00000109289) #28	ENSDARG00000114387	sh3bp5b (ENSDARG00000103978)	capn7 (ENSDARG00000102987)	ENSDARG00000079752	PIK3R4 (ENSDARG00000060469)	decr1 (ENSDARG00000003869)	CALB1 (ENSDARG00000031598)	ENSDARG00000103001	pnp4b (ENSDARG00000029230)	ENSDARG00000069941
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT00940000158787	ENSGT00940000159442	ENSGT01030000235133	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Protacanthopterygii	ANCESTRAL SPECIES	50				ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT01010000223313	ENSGT00940000156318.b.b	ENSGT00940000154063.C.a.a.b	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291.j	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	85	ENSGT00940000158787.g.a	ENSGT00940000159442.c	ENSGT01090000260070.C.a.d	ENSGT00390000017974.nb.c	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c	ENSGT00390000005813.i	ENSGT00950000183028.a.b.a.e	ENSGT00940000158871.c #36	ENSGT00810000125524.c #35	ENSGT00390000003012 #34	ENSGT00940000156553.g #33	ENSGT00940000159398.d	ENSGT00950000182941.a.a.b.e.a.b.e #21	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #22	ENSGT00940000160627.k #23	ENSGT00940000154096.b.b.b.b.b.b ##24	ENSGT00950000182986.b.d #25	ENSGT00390000004808.e.b #27	ENSGT00390000001737.p #28	ENSGT00940000158915.ab.a #29	ENSGT00940000159465.c.a #30	ENSGT00940000155107.a.a.a.a #31	ENSGT00990000203803.c	ENSGT00940000156762.i	ENSGT00940000157291.j.b	ENSGT00390000015364.b.m	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a.c	ENSGT00950000183182.a.a
Salmoninae_a	ANCESTRAL SPECIES	93	ENSGT00940000158787.g.a	ENSGT00940000159442.c.b	ENSGT01090000260070.C.a.d	ENSGT00390000017974.nb.c	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c	ENSGT00390000005813.i	ENSGT00950000183028.a.b.a.e	ENSGT00940000158871.c #36	ENSGT00810000125524.c #35	ENSGT00390000003012 #34	ENSGT00940000156553.g #33	ENSGT00940000159398.d	ENSGT00950000182941.a.a.b.e.a.b.e #21	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #22	ENSGT00940000160627.k #23	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b ##24	ENSGT00950000182986.b.d #25	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #28	ENSGT00940000158915.ab.a #29	ENSGT00940000159465.c.a #30	ENSGT00940000155107.a.a.a.a #31	ENSGT00990000203803.c	ENSGT00940000156762.i	ENSGT00940000157291.j.b	ENSGT00390000015364.b.m	ENSGT00390000016054.b.i.e.a
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000158787.g.a	ENSGT00940000159442.c.b	ENSGT01090000260070.C.a.d	ENSGT00390000017974.nb.c	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c	ENSGT00390000005813.i	ENSGT00950000183028.a.b.a.e	ENSGT00940000158871.c #36	ENSGT00810000125524.c #35	ENSGT00390000003012 #34	ENSGT00940000156553.g #33	ENSGT00940000159398.d	ENSGT00950000182941.a.a.b.e.a.b.e #21	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #22	ENSGT00940000160627.k #23	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b ##24	ENSGT00950000182986.b.d #25	ENSGT00390000004808.e.b #27	ENSGT01030000235168.d	ENSGT00390000001737.p #28	ENSGT00940000158915.ab.a #29	ENSGT00940000159465.c.a #30	ENSGT00940000155107.a.a.a.a #31	ENSGT00990000203803.c	ENSGT00940000156762.i	ENSGT00940000157291.j.b	ENSGT00390000015364.b.m	ENSGT00390000016054.b.i.e.a
Atlantic salmon	MODERN SPECIES	11	cnr2 (ENSSSAG00000042370)	akirin1 (ENSSSAG00000028046)	rhbdl2 (ENSSSAG00000042235)	GJA9 (ENSSSAG00000086489)	MYCBP (ENSSSAG00000111295)	rragc (ENSSSAG00000029084)	utp11 (ENSSSAG00000029460)	FHL3 (ENSSSAG00000110756)	rspo1 (ENSSSAG00000029819) #36	gnl2 (ENSSSAG00000030089) #35	dnali1 (ENSSSAG00000030760) #34	SNIP1 (ENSSSAG00000031003) #33	ENSSSAG00000031511	MAP7D1 (ENSSSAG00000040212) #21	ENSSSAG00000040460	THRAP3 (ENSSSAG00000041257) #22	sh3d21 (ENSSSAG00000039492) #23	ENSSSAG00000041298	eva1ba (ENSSSAG00000097911) ##24	STK40 (ENSSSAG00000100035) #25	OSCP1 (ENSSSAG00000041394) #27	mrps15 (ENSSSAG00000041549) #28	CSF3R (ENSSSAG00000041566) #29	GRIK3 (ENSSSAG00000041700) #30	ZC3H12A (ENSSSAG00000047150) #31	ENSSSAG00000114064	INPP5B (ENSSSAG00000047240)	mtf1 (ENSSSAG00000051914)	yrdc (ENSSSAG00000051953)	MANEAL (ENSSSAG00000051959)	ENSSSAG00000051967
River trout	MODERN SPECIES	30	rhbdl2 (ENSSTUG00000043631)	GJA9 (ENSSTUG00000043643)	ENSSTUG00000043663	rragca (ENSSTUG00000043681)	pou3f1 (ENSSTUG00000043698)	utp11 (ENSSTUG00000043702)	FHL3 (ENSSTUG00000043720)	rspo1 (ENSSTUG00000043724) #36	ENSSTUG00000043729	gnl2 (ENSSTUG00000043753) #35	dnali1 (ENSSTUG00000043924) #34	SNIP1 (ENSSTUG00000043947) #33	MAP3K6 (ENSSTUG00000043972)	MAP7D1 (ENSSTUG00000044228) #21	ENSSTUG00000044325	THRAP3 (ENSSTUG00000044338) #22	sh3d21 (ENSSTUG00000044407) #23	ENSSTUG00000044433	eva1ba (ENSSTUG00000044439) ##24	STK40 (ENSSTUG00000044443) #25	OSCP1 (ENSSTUG00000044465) #27	ENSSTUG00000044527	mrps15 (ENSSTUG00000044540) #28	csf3r (ENSSTUG00000044555) #29	GRIK3 (ENSSTUG00000044620) #30	ZC3H12A (ENSSTUG00000045847) #31	INPP5B (ENSSTUG00000045888)	mtf1 (ENSSTUG00000046336)	yrdc (ENSSTUG00000046359)	MANEAL (ENSSTUG00000046363)	LIN28A (ENSSTUG00000046372)
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000158787.g.a	ENSGT00940000159442.d	ENSGT01090000260070.C.a.d	ENSGT00390000017974.nb.c	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c	ENSGT00390000005813.i	ENSGT00950000183028.a.b.a.e	ENSGT00940000158871.c #36	ENSGT00810000125524.c #35	ENSGT00390000003012.l.a #34	ENSGT00940000156553.g #33	ENSGT00940000159398.d	ENSGT00950000182941.a.a.b.e.a.b.e #21	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #22	ENSGT00940000160627.k #23	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b ##24	ENSGT00950000182986.b.d #25	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #28	ENSGT00940000158915.ab.a #29	ENSGT00940000159465.c.a #30	ENSGT00940000155107.a.a.a.a #31	ENSGT00990000203803.c	ENSGT00940000156762.i	ENSGT00940000157291.j.b	ENSGT00390000015364.b.m	ENSGT00390000016054.b.i.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000158787.g.a	ENSGT00940000159442.c.b	ENSGT01090000260070.C.a.d	ENSGT00390000017974.nb.c	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c	ENSGT00390000005813.i	ENSGT00950000183028.a.b.a.e	ENSGT00940000158871.c #36	ENSGT00810000125524.c #35	ENSGT00390000003012.l.a #34	ENSGT00940000156553.g #33	ENSGT00940000159398.d	ENSGT00950000182941.a.a.b.e.a.b.e #21	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #22	ENSGT00940000160627.k #23	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b ##24	ENSGT00950000182986.b.d #25	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #28	ENSGT00940000158915.ab.a #29	ENSGT00940000159465.c.a #30	ENSGT00940000155107.a.a.a.a #31	ENSGT00990000203803.c	ENSGT00940000156762.i	ENSGT00940000157291.j.b	ENSGT00390000015364.b.m	ENSGT00390000016054.b.i.e.a
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2926						pou3f1 (ENSOTSG00005029284)	utp11 (ENSOTSG00005029286)	FHL3 (ENSOTSG00005029287)	rspo1 (ENSOTSG00005029290) #36	gnl2 (ENSOTSG00005029292) #35	dnali1 (ENSOTSG00005029295) #34	SNIP1 (ENSOTSG00005029299) #33	ENSOTSG00005029304	MAP7D1 (ENSOTSG00005029313) #21	ENSOTSG00005029324	THRAP3 (ENSOTSG00005029326) #22	sh3d21 (ENSOTSG00005029328) #23	eva1ba (ENSOTSG00005029329) ##24	STK40 (ENSOTSG00005029330) #25	OSCP1 (ENSOTSG00005029336) #27	mrps15 (ENSOTSG00005029450) #28	ENSOTSG00005029451	csf3r (ENSOTSG00005029452) #29	GRIK3 (ENSOTSG00005029467) #30	ZC3H12A (ENSOTSG00005033079) #31	ENSOTSG00005033081	INPP5B (ENSOTSG00005033083)	mtf1 (ENSOTSG00005033088)	yrdc (ENSOTSG00005033091)	MANEAL (ENSOTSG00005033092)	LIN28A (ENSOTSG00005033093)
Chinook salmon	MODERN SPECIES	22	ENSOTSG00005002063	CALHM5 (ENSOTSG00005002062)	calhm6 (ENSOTSG00005002060)	klhl32 (ENSOTSG00005002042)	mms22l (ENSOTSG00005002033)	pou3f1 (ENSOTSG00005002026)	utp11 (ENSOTSG00005002023)	FHL3 (ENSOTSG00005002021)	rspo1 (ENSOTSG00005002019) #36	gnl2 (ENSOTSG00005002018) #35	dnali1 (ENSOTSG00005002016) #34	SNIP1 (ENSOTSG00005002012) #33	ENSOTSG00005000717	MAP7D1 (ENSOTSG00005011384) #21	ENSOTSG00005011382	THRAP3 (ENSOTSG00005011377) #22	sh3d21 (ENSOTSG00005011372) #23	eva1ba (ENSOTSG00005011369) ##24	STK40 (ENSOTSG00005011356) #25	OSCP1 (ENSOTSG00005011313) #27	ENSOTSG00005011310	mrps15 (ENSOTSG00005011308) #28	csf3r (ENSOTSG00005011303) #29	GRIK3 (ENSOTSG00005007874) #30	ZC3H12A (ENSOTSG00005007864) #31	ENSOTSG00005007863	INPP5B (ENSOTSG00005007623)	mtf1 (ENSOTSG00005007615)	yrdc (ENSOTSG00005007612)	MANEAL (ENSOTSG00005007610)	LIN28A (ENSOTSG00005007608)
Chinook salmon	MODERN SPECIES	22	fam110d (ENSOTSG00005006000)	SLC9A1 (ENSOTSG00005006007)	ENSOTSG00005006123	ENSOTSG00005006142	ENSOTSG00005007950	pou3f1 (ENSOTSG00005007951)	utp11 (ENSOTSG00005007952)	FHL3 (ENSOTSG00005007953)	rspo1 (ENSOTSG00005007954) #36	gnl2 (ENSOTSG00005007955) #35	dnali1 (ENSOTSG00005007956) #34	SNIP1 (ENSOTSG00005007957) #33	ENSOTSG00005007960	MAP7D1 (ENSOTSG00005008519) #21	ENSOTSG00005008523	THRAP3 (ENSOTSG00005008526) #22	sh3d21 (ENSOTSG00005008530) #23	eva1ba (ENSOTSG00005008534) ##24	STK40 (ENSOTSG00005008536) #25	OSCP1 (ENSOTSG00005008539) #27	ENSOTSG00005008583	mrps15 (ENSOTSG00005008585) #28	csf3r (ENSOTSG00005008586) #29	GRIK3 (ENSOTSG00005008615) #30	ZC3H12A (ENSOTSG00005011535) #31	ENSOTSG00005011536	INPP5B (ENSOTSG00005011544)	mtf1 (ENSOTSG00005012824)	yrdc (ENSOTSG00005000054)	MANEAL (ENSOTSG00005000089)	LIN28A (ENSOTSG00005000110)
Coho salmon	MODERN SPECIES	11	rhbdl2 (ENSOKIG00005017791)	GJA9 (ENSOKIG00005017806)	ENSOKIG00005017810	rragca (ENSOKIG00005017823)	ENSOKIG00005017835	pou3f1 (ENSOKIG00005017836)	utp11 (ENSOKIG00005017841)	FHL3 (ENSOKIG00005017877)	rspo1 (ENSOKIG00005017887) #36	gnl2 (ENSOKIG00005017905) #35	dnali1 (ENSOKIG00005017939) #34	SNIP1 (ENSOKIG00005017975) #33	ENSOKIG00005018009	MAP7D1 (ENSOKIG00005018595) #21	ENSOKIG00005018600	THRAP3 (ENSOKIG00005018602) #22	sh3d21 (ENSOKIG00005018614) #23	ENSOKIG00005018636	eva1ba (ENSOKIG00005018655) ##24	STK40 (ENSOKIG00005018666) #25	OSCP1 (ENSOKIG00005018695) #27	mrps15 (ENSOKIG00005018782) #28	csf3r (ENSOKIG00005018820) #29	GRIK3 (ENSOKIG00005018849) #30	ZC3H12A (ENSOKIG00005018878) #31	ENSOKIG00005018888	INPP5B (ENSOKIG00005018928)	mtf1 (ENSOKIG00005019448)	yrdc (ENSOKIG00005019460)	MANEAL (ENSOKIG00005019463)	LIN28A (ENSOKIG00005019468)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000009147	rragca (ENSOMYG00000009167)	ENSOMYG00000071645	pou3f1 (ENSOMYG00000009181)	utp11 (ENSOMYG00000009193)	FHL3 (ENSOMYG00000009234)	rspo1 (ENSOMYG00000009271) #36	ENSOMYG00000002892	gnl2 (ENSOMYG00000009355) #35	dnali1 (ENSOMYG00000009575) #34	SNIP1 (ENSOMYG00000009635) #33	ENSOMYG00000009719	MAP7D1 (ENSOMYG00000009849) #21	ENSOMYG00000073482	ENSOMYG00000009890	THRAP3 (ENSOMYG00000009930) #22	sh3d21 (ENSOMYG00000009987) #23	ENSOMYG00000062962	ENSOMYG00000010013	eva1ba (ENSOMYG00000010031) ##24	ENSOMYG00000069582	STK40 (ENSOMYG00000010073) #25	OSCP1 (ENSOMYG00000010242) #27	mrps15 (ENSOMYG00000010362) #28	csf3r (ENSOMYG00000010394) #29	GRIK3 (ENSOMYG00000010580) #30	ZC3H12A (ENSOMYG00000011243) #31	ENSOMYG00000011247	INPP5B (ENSOMYG00000011361)	mtf1 (ENSOMYG00000011933)	yrdc (ENSOMYG00000011956)
Huchen	MODERN SPECIES	193	GJA9 (ENSHHUG00000024386)	ENSHHUG00000024370	rragca (ENSHHUG00000024334)	pou3f1 (ENSHHUG00000024330)	utp11 (ENSHHUG00000024320)	FHL3 (ENSHHUG00000024316)	rspo1 (ENSHHUG00000024308) #36	ENSHHUG00000024306	gnl2 (ENSHHUG00000024270) #35	dnali1 (ENSHHUG00000024268) #34	SNIP1 (ENSHHUG00000039761) #33	MAP3K6 (ENSHHUG00000039558)	MAP7D1 (ENSHHUG00000039548) #21	ENSHHUG00000039543 #21	ENSHHUG00000039517	THRAP3 (ENSHHUG00000039505) #22	sh3d21 (ENSHHUG00000039486) #23	eva1ba (ENSHHUG00000039481) ##24	STK40 (ENSHHUG00000039465) #25	ENSHHUG00000039453	OSCP1 (ENSHHUG00000039437) #27	ENSHHUG00000039417	csf3r (ENSHHUG00000039373) #29	GRIK3 (ENSHHUG00000039209) #30	ZC3H12A (ENSHHUG00000039189) #31	ENSHHUG00000039165	INPP5B (ENSHHUG00000039010)	mtf1 (ENSHHUG00000038992)	yrdc (ENSHHUG00000038990)	MANEAL (ENSHHUG00000038981)	LIN28A (ENSHHUG00000038978)
Salmoninae	ANCESTRAL SPECIES	85	ENSGT00940000158787.g.b	ENSGT00940000159442.d	ENSGT01090000260070.C.a.c	ENSGT00390000017974.nb.d	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d	ENSGT00390000005813.j	ENSGT00950000183028.a.b.a.f	ENSGT00940000158871.d #36	ENSGT00810000125524.d #35	ENSGT00940000179482	ENSGT00940000156553.h #33	ENSGT00940000159398.c	ENSGT00950000182941.a.a.b.e.a.b.f #21	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000183163.a.a.ab.d #22	ENSGT00940000160627.l #23	ENSGT00940000154096.b.b.b.b.b.a ##24	ENSGT00950000182986.b.c #25	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #28	ENSGT00940000158915.ab.b #29	ENSGT00940000159465.d #30	ENSGT00940000155107.a.a.a.b #31	ENSGT00990000203803.d	ENSGT00940000156762.j	ENSGT00940000157291.j.a	ENSGT00390000015364.b.n
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00940000158787.g.b	ENSGT00940000159442.d	ENSGT01090000260070.C.a.c	ENSGT00390000017974.nb.d	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d	ENSGT00390000005813.j	ENSGT00950000183028.a.b.a.f	ENSGT00940000158871.d #36	ENSGT00810000125524.d #35	ENSGT00940000179482	ENSGT00940000156553.h #33	ENSGT00940000159398.c	ENSGT00950000182941.a.a.b.e.a.b.f #21	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000183163.a.a.ab.d #22	ENSGT00940000160627.l #23	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a ##24	ENSGT00950000182986.b.c #25	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #28	ENSGT00940000158915.ab.b #29	ENSGT00940000159465.d #30	ENSGT00940000155107.a.a.a.b #31	ENSGT00990000203803.d	ENSGT00940000156762.j	ENSGT00940000157291.j.a	ENSGT00390000015364.b.n	ENSGT00390000016054.b.i.e.b
Salmo	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b.e	ENSGT00940000158787.g.b	ENSGT00940000159442.d	ENSGT01090000260070.C.a.c	ENSGT00980000199494.a.b	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d	ENSGT00390000005813.j	ENSGT00950000183028.a.b.a.f	ENSGT00940000158871.d #36	ENSGT00810000125524.d #35	ENSGT00940000156553.h #33	ENSGT00940000159398.c	ENSGT00950000182941.a.a.b.e.a.b.f #21	ENSGT00940000154063.C.a.a.b.j.b.b	ENSGT00950000183163.a.a.ab.d #22	ENSGT00940000160627.l #23	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a ##24	ENSGT00950000182986.b.c #25	ENSGT00390000004808.e.a #27	ENSGT00390000001737.o #28	ENSGT00940000158915.ab.b #29	ENSGT00940000159465.c.b.b #30	ENSGT00940000155107.a.a.a.b #31	ENSGT00990000203803.d	ENSGT00940000156762.j	ENSGT00940000157291.j.a	ENSGT00990000213494	ENSGT00390000016054.b.i.e.b	ENSGT00940000153295.a.a.d
River trout	MODERN SPECIES	22	ENSSTUG00000029536	rragca (ENSSTUG00000029518)	pou3f1 (ENSSTUG00000029513)	utp11 (ENSSTUG00000029502)	FHL3 (ENSSTUG00000029489)	rspo1 (ENSSTUG00000029480) #36	gnl2 (ENSSTUG00000029330) #35	SNIP1 (ENSSTUG00000029312) #33	ENSSTUG00000029010	MAP7D1 (ENSSTUG00000028932) #21	ENSSTUG00000028926	fam177a1 (ENSSTUG00000028915)	fam177a1 (ENSSTUG00000028906)	ENSSTUG00000028899	ENSSTUG00000028878	THRAP3 (ENSSTUG00000028821) #22	sh3d21 (ENSSTUG00000028799) #23	eva1ba (ENSSTUG00000028783) ##24	STK40 (ENSSTUG00000028762) #25	OSCP1 (ENSSTUG00000028650) #27	mrps15 (ENSSTUG00000028606) #28	ENSSTUG00000010809	GRIK3 (ENSSTUG00000008608) #30	ZC3H12A (ENSSTUG00000008510) #31	ENSSTUG00000008498	INPP5B (ENSSTUG00000007064)	mtf1 (ENSSTUG00000007007)	ENSSTUG00000006966	MANEAL (ENSSTUG00000006949)	LIN28A (ENSSTUG00000006944)	mecr (ENSSTUG00000006842)
Atlantic salmon	MODERN SPECIES	24	rhbdl2 (ENSSSAG00000116091)	GJA9 (ENSSSAG00000108800)	ENSSSAG00000107037	rragca (ENSSSAG00000042174)	utp11 (ENSSSAG00000042064)	FHL3 (ENSSSAG00000042046)	rspo1 (ENSSSAG00000112303) #36	gnl2 (ENSSSAG00000041915)	dnali1 (ENSSSAG00000041885) #34	ENSSSAG00000041874 #33	ENSSSAG00000041598	MAP7D1 (ENSSSAG00000041522) #21	ENSSSAG00000010394	ENSSSAG00000039686	ENSSSAG00000114956	THRAP3 (ENSSSAG00000039533) #22	sh3d21 (ENSSSAG00000041288) #23	ENSSSAG00000100766	CA078 (ENSSSAG00000039398) ##24	STK40 (ENSSSAG00000039079) #25	OSCP1 (ENSSSAG00000038140) #27	mrps15 (ENSSSAG00000037592) #28	csf3r (ENSSSAG00000072535) #29	GRIK3 (ENSSSAG00000070593) #30	ENSSSAG00000091521	ZC3H12A (ENSSSAG00000070519) #31	ENSSSAG00000121662	ENSSSAG00000070412	mtf1 (ENSSSAG00000070392)	ENSSSAG00000070389	ENSSSAG00000103283
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00940000159442.c.a	ENSGT01090000260070.C.a.c	ENSGT00390000017974.nb.d	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d	ENSGT00390000005813.j	ENSGT00950000183028.a.b.a.f	ENSGT00940000158871.d #36	ENSGT00810000125524.d #35	ENSGT00940000179482	ENSGT00940000156553.h #33	ENSGT00940000159398.c	ENSGT00950000182941.a.a.b.e.a.b.f #21	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00950000183163.a.a.ab.d #22	ENSGT00940000160627.l #23	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a ##24	ENSGT00950000182986.b.c #25	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #28	ENSGT00940000158915.ab.b #29	ENSGT00940000159465.d #30	ENSGT00940000155107.a.a.a.b #31	ENSGT00990000203803.d	ENSGT00940000156762.j	ENSGT00940000157291.j.a	ENSGT00390000015364.b.n	ENSGT00390000016054.b.i.e.b
Oncorhynchus_a	ANCESTRAL SPECIES	127					ENSGT00940000165372.d	ENSGT00390000005813.j	ENSGT00950000183028.a.b.a.f	ENSGT00940000158871.d #36	ENSGT00810000125524.d #35	ENSGT00940000179482	ENSGT00940000156553.h #33	ENSGT00940000159398.c	ENSGT00950000182941.a.a.b.e.a.b.f #21	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00950000183163.a.a.ab.d #22	ENSGT00940000160627.l #23	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a ##24	ENSGT00950000182986.b.c #25	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #28	ENSGT00940000158915.ab.b #29	ENSGT00940000159465.d #30	ENSGT00940000155107.a.a.a.b #31	ENSGT00990000203803.d	ENSGT00940000156762.j	ENSGT00940000157291.j.a	ENSGT00390000015364.b.n	ENSGT00390000016054.b.i.e.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2914	GJA9 (ENSOTSG00005030316)	ENSOTSG00005030315	rragca (ENSOTSG00005030314)	ENSOTSG00005030313	pou3f1 (ENSOTSG00005030312)	utp11 (ENSOTSG00005030311)	FHL3 (ENSOTSG00005030310)	rspo1 (ENSOTSG00005030309) #36	gnl2 (ENSOTSG00005030301) #35	ENSOTSG00005030258	SNIP1 (ENSOTSG00005030257) #33	ENSOTSG00005030207	MAP7D1 (ENSOTSG00005030200) #21	ENSOTSG00005030197	ENSOTSG00005030117	THRAP3 (ENSOTSG00005030112) #22	sh3d21 (ENSOTSG00005030111) #23	ENSOTSG00005030110	eva1ba (ENSOTSG00005030108) ##24	STK40 (ENSOTSG00005030106) #25	OSCP1 (ENSOTSG00005030103) #27	ENSOTSG00005030101	mrps15 (ENSOTSG00005030100) #28	ENSOTSG00005030098 #29	GRIK3 (ENSOTSG00005026887) #30	ZC3H12A (ENSOTSG00005026883) #31	ENSOTSG00005026882	INPP5B (ENSOTSG00005026202)	mtf1 (ENSOTSG00005026183)	yrdc (ENSOTSG00005026084)	MANEAL (ENSOTSG00005026078)
Chinook salmon	MODERN SPECIES	15	ENSOTSG00005002623	rragca (ENSOTSG00005002634)	ENSOTSG00005002863	pou3f1 (ENSOTSG00005003033)	utp11 (ENSOTSG00005003113)	FHL3 (ENSOTSG00005003210)	ENSOTSG00005003212	rspo1 (ENSOTSG00005003214) #36	gnl2 (ENSOTSG00005003221) #35	ENSOTSG00005003337	SNIP1 (ENSOTSG00005003366) #33	ENSOTSG00005003369	MAP7D1 (ENSOTSG00005003383) #21	ENSOTSG00005003397	ENSOTSG00005003401	THRAP3 (ENSOTSG00005003479) #22	sh3d21 (ENSOTSG00005003486) #23	ENSOTSG00005003493	eva1ba (ENSOTSG00005003495) ##24	STK40 (ENSOTSG00005003497) #25	OSCP1 (ENSOTSG00005003499) #27	ENSOTSG00005003502	mrps15 (ENSOTSG00005003503) #28	GRIK3 (ENSOTSG00005003513) #30	ZC3H12A (ENSOTSG00005004525) #31	ENSOTSG00005004527	INPP5B (ENSOTSG00005004531)	mtf1 (ENSOTSG00005006701)	yrdc (ENSOTSG00005006745)	MANEAL (ENSOTSG00005006800)	LIN28A (ENSOTSG00005006802)
Coho salmon	MODERN SPECIES	4	GJA9 (ENSOKIG00005013255)	ENSOKIG00005013247	rragca (ENSOKIG00005013221)	ENSOKIG00005013216	pou3f1 (ENSOKIG00005013212)	utp11 (ENSOKIG00005013205)	FHL3 (ENSOKIG00005013194)	rspo1 (ENSOKIG00005013187) #36	gnl2 (ENSOKIG00005012985) #35	ENSOKIG00005012932	SNIP1 (ENSOKIG00005012923) #33	MAP3K6 (ENSOKIG00005012344)	ENSOKIG00005012292	MAP7D1 (ENSOKIG00005012228) #21	ENSOKIG00005012207	THRAP3 (ENSOKIG00005012188) #22	sh3d21 (ENSOKIG00005012171) #23	ENSOKIG00005012134	eva1ba (ENSOKIG00005012126) ##24	STK40 (ENSOKIG00005012106) #25	ENSOKIG00005012100	ENSOKIG00005012097	OSCP1 (ENSOKIG00005012056) #27	ENSOKIG00005012040	mrps15 (ENSOKIG00005012017) #28	ENSOKIG00005011934 #29	GRIK3 (ENSOKIG00005010276) #30	ZC3H12A (ENSOKIG00005010157) #31	ENSOKIG00005010146	INPP5B (ENSOKIG00005008484)	mtf1 (ENSOKIG00005008291)
Rainbow trout	MODERN SPECIES	11	rragca (ENSOMYG00000036070)	pou3f1 (ENSOMYG00000036081)	utp11 (ENSOMYG00000036096)	FHL3 (ENSOMYG00000036105)	rspo1 (ENSOMYG00000036112) #36	ENSOMYG00000074317	gnl2 (ENSOMYG00000036245) #35	ENSOMYG00000037484 #33	ENSOMYG00000047915	ENSOMYG00000037595	MAP7D1 (ENSOMYG00000038006) #21	ENSOMYG00000038040	ENSOMYG00000050329	ENSOMYG00000038029	ENSOMYG00000063060	THRAP3 (ENSOMYG00000038051) #22	sh3d21 (ENSOMYG00000038065) #23	eva1ba (ENSOMYG00000055958) ##24	STK40 (ENSOMYG00000038106) #25	ENSOMYG00000038134	ENSOMYG00000070784	ENSOMYG00000038157	mrps15 (ENSOMYG00000038191) #28	ENSOMYG00000054305	GRIK3 (ENSOMYG00000027368) #30	ZC3H12A (ENSOMYG00000031296) #31	ENSOMYG00000031305	INPP5B (ENSOMYG00000031490)	mtf1 (ENSOMYG00000031965)	yrdc (ENSOMYG00000031998)	MANEAL (ENSOMYG00000032020)
Huchen	MODERN SPECIES	516						pou3f1 (ENSHHUG00000023677)	utp11 (ENSHHUG00000023669)	FHL3 (ENSHHUG00000023662)	rspo1 (ENSHHUG00000023657) #36	gnl2 (ENSHHUG00000023471) #35	ENSHHUG00000023458	SNIP1 (ENSHHUG00000023456) #33	MAP3K6 (ENSHHUG00000023393)	MAP7D1 (ENSHHUG00000023310) #21	ENSHHUG00000023305	THRAP3 (ENSHHUG00000023283) #22	sh3d21 (ENSHHUG00000023275) #23	eva1ba (ENSHHUG00000023251) ##24	STK40 (ENSHHUG00000023245) #25	OSCP1 (ENSHHUG00000023235) #27	ENSHHUG00000023196	mrps15 (ENSHHUG00000023165) #28
Northern pike	MODERN SPECIES	19	GJA9 (ENSELUG00000017242)	ENSELUG00000025351	rragca (ENSELUG00000017293)	pou3f1 (ENSELUG00000017309)	utp11 (ENSELUG00000017361)	FHL3 (ENSELUG00000000657)	rspo1 (ENSELUG00000017421) #36	gnl2 (ENSELUG00000000675) #35	dnali1 (ENSELUG00000000681) #34	SNIP1 (ENSELUG00000017487) #33	MAP3K6 (ENSELUG00000017546)	map7d1a (ENSELUG00000017646) #21	ENSELUG00000000703	ENSELUG00000017676	ENSELUG00000034553	THRAP3 (ENSELUG00000017733) #22	sh3d21 (ENSELUG00000017766) #23	eva1ba (ENSELUG00000017790) ##24	STK40 (ENSELUG00000017831) #25	OSCP1 (ENSELUG00000017885) #27	PL8L1 (ENSELUG00000032488)	mrps15 (ENSELUG00000017968) #28	smpdl3b (ENSELUG00000017994)	mecr (ENSELUG00000018018)	LIN28A (ENSELUG00000018033)	MANEAL (ENSELUG00000018058)	yrdc (ENSELUG00000018071)	mtf1 (ENSELUG00000018101)	INPP5B (ENSELUG00000018233)	ENSELUG00000029697	ENSELUG00000018264
Acanthomorphata	ANCESTRAL SPECIES	38	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.G	ENSGT00950000183199.a.b	ENSGT00940000177028	ENSGT00940000163576	ENSGT00940000161202	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Percomorphaceae	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Carangaria	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00940000178211	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Turbot	MODERN SPECIES		akirin1 (ENSSMAG00000003202)	rhbdl2 (ENSSMAG00000003252)	GJA9 (ENSSMAG00000003266)	ENSSMAG00000003287	rragca (ENSSMAG00000003327)	pou3f1 (ENSSMAG00000003341)	ENSSMAG00000035984	utp11 (ENSSMAG00000003346)	FHL3 (ENSSMAG00000027104)	rspo1 (ENSSMAG00000003444) #36	gnl2 (ENSSMAG00000003472) #35	dnali1 (ENSSMAG00000003563) #34	SNIP1 (ENSSMAG00000003570) #33	ENSSMAG00000003583	MAP7D1 (ENSSMAG00000003648) #21	THRAP3 (ENSSMAG00000003703) #22	sh3d21 (ENSSMAG00000003747) #23	eva1ba (ENSSMAG00000023907) ##24	STK40 (ENSSMAG00000003802) #25	OSCP1 (ENSSMAG00000003827) #27	ENSSMAG00000003843	mrps15 (ENSSMAG00000003899) #28	csf3r (ENSSMAG00000003925) #29	GRIK3 (ENSSMAG00000005100) #30	ZC3H12A (ENSSMAG00000005140) #31	INPP5B (ENSSMAG00000005147)	mtf1 (ENSSMAG00000005172)	yrdc (ENSSMAG00000005195)	MANEAL (ENSSMAG00000005209)	ENSSMAG00000005221	ENSSMAG00000005269
Tongue sole	MODERN SPECIES	4	cnr2 (ENSCSEG00000020263)	akirin1 (ENSCSEG00000020264)	rhbdl2 (ENSCSEG00000020266)	GJA9 (ENSCSEG00000020269)	ENSCSEG00000020270	rragca (ENSCSEG00000020277)	pou3f1 (ENSCSEG00000020279)	utp11 (ENSCSEG00000020281)	FHL3 (ENSCSEG00000020285)	rspo1 (ENSCSEG00000020287) #36	gnl2 (ENSCSEG00000020296) #35	dnali1 (ENSCSEG00000020307) #34	snip1 (ENSCSEG00000020310)	ENSCSEG00000020313	MAP7D1 (ENSCSEG00000020319) #21	ENSCSEG00000020325 #22	sh3d21 (ENSCSEG00000020331) #23	ENSCSEG00000020336	ENSCSEG00000020343	selenbp1 (ENSCSEG00000020362)	pogzb (ENSCSEG00000020370)	ENSCSEG00000020374	plekho1b (ENSCSEG00000020399)	ENSCSEG00000020402	ENSCSEG00000020409	ENSCSEG00000020416	ENSCSEG00000020420	iqgap3 (ENSCSEG00000020426)	ANKRD34A (ENSCSEG00000020436)	gon4lb (ENSCSEG00000020441)	ENSCSEG00000020454
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Barramundi perch	MODERN SPECIES	104	cnr2 (ENSLCAG00010003413)	akirin1 (ENSLCAG00010003420)	rhbdl2 (ENSLCAG00010003426)	GJA9 (ENSLCAG00010003430)	ENSLCAG00010003436	rragca (ENSLCAG00010003445)	pou3f1 (ENSLCAG00010003450)	utp11 (ENSLCAG00010003455)	FHL3 (ENSLCAG00010003463)	rspo1 (ENSLCAG00010003470) #36	gnl2 (ENSLCAG00010003490) #35	dnali1 (ENSLCAG00010003510) #34	snip1 (ENSLCAG00010003515)	ENSLCAG00010003538	MAP7D1 (ENSLCAG00010003586) #21	THRAP3 (ENSLCAG00010003595) #22	sh3d21 (ENSLCAG00010003598) #23	eva1ba (ENSLCAG00010003602) ##24	STK40 (ENSLCAG00010003605) #25	OSCP1 (ENSLCAG00010003615) #27	ENSLCAG00010003627	mrps15 (ENSLCAG00010003634) #28	CSF3R (ENSLCAG00010003642) #29
Seriola	ANCESTRAL SPECIES	48	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Greater amberjack	MODERN SPECIES	154	cnr2 (ENSSDUG00000010638)	akirin1 (ENSSDUG00000010616)	rhbdl2 (ENSSDUG00000010587)	GJA9 (ENSSDUG00000010578)	ENSSDUG00000010570	rragca (ENSSDUG00000010543)	pou3f1 (ENSSDUG00000010532)	utp11 (ENSSDUG00000010501)	FHL3 (ENSSDUG00000010483)	rspo1 (ENSSDUG00000010472) #36	gnl2 (ENSSDUG00000010382) #35	dnali1 (ENSSDUG00000010345) #34	SNIP1 (ENSSDUG00000010325) #33	MAP3K6 (ENSSDUG00000010287)	MAP7D1 (ENSSDUG00000010208) #21	THRAP3 (ENSSDUG00000010132) #22	sh3d21 (ENSSDUG00000010098) #23	eva1ba (ENSSDUG00000010078) ##24	STK40 (ENSSDUG00000010024) #25	OSCP1 (ENSSDUG00000009984) #27	ENSSDUG00000009969	mrps15 (ENSSDUG00000009946) #28	csf3r (ENSSDUG00000009924) #29	GRIK3 (ENSSDUG00000009891) #30	ZC3H12A (ENSSDUG00000009879) #31	ENSSDUG00000009859	INPP5B (ENSSDUG00000009812)	mtf1 (ENSSDUG00000009784)	yrdc (ENSSDUG00000009775)	MANEAL (ENSSDUG00000009753)	ENSSDUG00000009740
Yellowtail amberjack	MODERN SPECIES	2938	pnrc2 (ENSSLDG00000002725)	cnr2 (ENSSLDG00000002743)	akirin1 (ENSSLDG00000002773)	rhbdl2 (ENSSLDG00000002824)	GJA9 (ENSSLDG00000002865)	ENSSLDG00000002881	rragca (ENSSLDG00000002931)	pou3f1 (ENSSLDG00000002965)	utp11 (ENSSLDG00000002990)	FHL3 (ENSSLDG00000003064)	rspo1 (ENSSLDG00000003101) #36	gnl2 (ENSSLDG00000003122) #35	dnali1 (ENSSLDG00000003211) #34	SNIP1 (ENSSLDG00000003260) #33	MAP3K6 (ENSSLDG00000003273)	THRAP3 (ENSSLDG00000003306) #22	sh3d21 (ENSSLDG00000003350) #23	eva1ba (ENSSLDG00000003421) ##24	STK40 (ENSSLDG00000003439) #25	OSCP1 (ENSSLDG00000003542) #27	ENSSLDG00000003618	mrps15 (ENSSLDG00000003653) #28	csf3r (ENSSLDG00000003702) #29	GRIK3 (ENSSLDG00000003728) #30	ZC3H12A (ENSSLDG00000003826) #31
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915.u #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915.u #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Climbing perch	MODERN SPECIES	7	ENSATEG00000026230	pnrc2 (ENSATEG00000009149)	cnr2 (ENSATEG00000030122)	akirin1 (ENSATEG00000009163)	rhbdl2 (ENSATEG00000009166)	GJA9 (ENSATEG00000009189)	ENSATEG00000009198	rragca (ENSATEG00000029155)	utp11 (ENSATEG00000009240)	FHL3 (ENSATEG00000009266)	rspo1 (ENSATEG00000009287) #36	gnl2 (ENSATEG00000009311) #35	dnali1 (ENSATEG00000009355) #34	ENSATEG00000009403	ENSATEG00000009579	THRAP3 (ENSATEG00000009618) #22	sh3d21 (ENSATEG00000009649) #23	eva1ba (ENSATEG00000009674) ##24	STK40 (ENSATEG00000009695) #25	OSCP1 (ENSATEG00000009753) #27	ENSATEG00000009806	mrps15 (ENSATEG00000009826) #28	csf3r (ENSATEG00000009872) #29	GRIK3 (ENSATEG00000009899) #30	ZC3H12A (ENSATEG00000009946) #31	INPP5B (ENSATEG00000010044)	mtf1 (ENSATEG00000025917)	yrdc (ENSATEG00000026326)	MANEAL (ENSATEG00000010095)	ENSATEG00000010132	ENSATEG00000010252
Siamese fighting fish	MODERN SPECIES	7	pnrc2 (ENSBSLG00000020985)	cnr2 (ENSBSLG00000021011)	akirin1 (ENSBSLG00000021034)	rhbdl2 (ENSBSLG00000021070)	GJA9 (ENSBSLG00000021090)	MYCBP (ENSBSLG00000021126)	rragca (ENSBSLG00000021174)	utp11 (ENSBSLG00000021215)	FHL3 (ENSBSLG00000021242)	rspo1 (ENSBSLG00000021269) #36	gnl2 (ENSBSLG00000021296) #35	dnali1 (ENSBSLG00000021397) #34	SNIP1 (ENSBSLG00000021403) #33	ENSBSLG00000021441	MAP7D1 (ENSBSLG00000021885) #21	THRAP3 (ENSBSLG00000021912) #22	sh3d21 (ENSBSLG00000021927) #23	eva1ba (ENSBSLG00000021956) ##24	STK40 (ENSBSLG00000021978) #25	OSCP1 (ENSBSLG00000022030) #27	ENSBSLG00000022016	mrps15 (ENSBSLG00000022038) #28	csf3r (ENSBSLG00000022045) #29	GRIK3 (ENSBSLG00000022127) #30	ENSBSLG00000022266	ZC3H12A (ENSBSLG00000022267) #31	ENSBSLG00000022271	INPP5B (ENSBSLG00000022431)	mtf1 (ENSBSLG00000022933)	yrdc (ENSBSLG00000022987)	MANEAL (ENSBSLG00000023019)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000008111	pnrc2 (ENSMAMG00000008081)	cnr2 (ENSMAMG00000008073)	akirin1 (ENSMAMG00000008054)	rhbdl2 (ENSMAMG00000026530)	ENSMAMG00000008023	rragca (ENSMAMG00000007964)	pou3f1 (ENSMAMG00000007950)	utp11 (ENSMAMG00000007927)	FHL3 (ENSMAMG00000007894)	rspo1 (ENSMAMG00000007882) #36	gnl2 (ENSMAMG00000007823) #35	dnali1 (ENSMAMG00000027064) #34	ENSMAMG00000007781	MAP7D1 (ENSMAMG00000007741) #21	THRAP3 (ENSMAMG00000007707) #22	sh3d21 (ENSMAMG00000007666) #23	eva1ba (ENSMAMG00000007649) ##24	STK40 (ENSMAMG00000007611) #25	OSCP1 (ENSMAMG00000007603) #27	ENSMAMG00000007593	mrps15 (ENSMAMG00000007572) #28	csf3r (ENSMAMG00000007544) #29	GRIK3 (ENSMAMG00000007505) #30	ZC3H12A (ENSMAMG00000007494) #31	INPP5B (ENSMAMG00000007345)	mtf1 (ENSMAMG00000007324)	yrdc (ENSMAMG00000028078)	MANEAL (ENSMAMG00000007300)	ENSMAMG00000007271	ENSMAMG00000027671
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000158787	ENSGT00940000159442	ENSGT01030000235133	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Tetraodontidae	ANCESTRAL SPECIES	49	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012.x.a #34	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30
Tetraodon	MODERN SPECIES	26	rad51c (ENSTNIG00000014964)	ENSTNIG00000014965	ENSTNIG00000002273	XPO1 (ENSTNIG00000003360)	cct4 (ENSTNIG00000003361)	pus10 (ENSTNIG00000003362)	ENSTNIG00000005303	ENSTNIG00000000317	ENSTNIG00000005304	ENSTNIG00000005305	ENSTNIG00000003614	abcd1 (ENSTNIG00000006189)	gnl2 (ENSTNIG00000003733) #35	dnali1 (ENSTNIG00000003732) #34	ENSTNIG00000012195 #21	THRAP3 (ENSTNIG00000012194) #22	sh3d21 (ENSTNIG00000012193) #23	STK40 (ENSTNIG00000012192) #25	OSCP1 (ENSTNIG00000012191) #27	mrps15 (ENSTNIG00000012190) #28	CSF3R (ENSTNIG00000001409) #29	GRIK3 (ENSTNIG00000012189) #30	PIEZO1 (ENSTNIG00000003588)	ENSTNIG00000003589	ENSTNIG00000003590	ENSTNIG00000003591	ENSTNIG00000003592	tm9sf2 (ENSTNIG00000003593)	SYNGAP1 (ENSTNIG00000010304)	smg5 (ENSTNIG00000010303)	PAQR6 (ENSTNIG00000010302)
Fugu	MODERN SPECIES	19	pnrc2 (ENSTRUG00000022856)	cnr2 (ENSTRUG00000008915)	akirin1 (ENSTRUG00000024601)	rhbdl2 (ENSTRUG00000009100)	GJA9 (ENSTRUG00000033096)	ENSTRUG00000020122	rragca (ENSTRUG00000009237)	pou3f1 (ENSTRUG00000009356)	utp11 (ENSTRUG00000009375)	FHL3 (ENSTRUG00000009493)	rspo1 (ENSTRUG00000009686) #36	gnl2 (ENSTRUG00000009789) #35	dnali1 (ENSTRUG00000010122) #34	ENSTRUG00000010218	MAP7D1 (ENSTRUG00000010556) #21	THRAP3 (ENSTRUG00000010702) #22	sh3d21 (ENSTRUG00000010927) #23	eva1ba (ENSTRUG00000010950) ##24	STK40 (ENSTRUG00000010973) #25	OSCP1 (ENSTRUG00000011056) #27	ENSTRUG00000021423	mrps15 (ENSTRUG00000011129) #28	CSF3R (ENSTRUG00000011157) #29	GRIK3 (ENSTRUG00000011437) #30	ENSTRUG00000027138	pbx2 (ENSTRUG00000011925)	dnase2 (ENSTRUG00000012127)	rgl2 (ENSTRUG00000012178)	ENSTRUG00000021243	SYNGAP1 (ENSTRUG00000012329)	smg5 (ENSTRUG00000012580)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000158787	ENSGT00940000159442	ENSGT01030000235133	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Ballan wrasse	MODERN SPECIES	58	rhbdl2 (ENSLBEG00000008248)	ENSLBEG00000008283	GJA9 (ENSLBEG00000008301)	ENSLBEG00000008336	rragca (ENSLBEG00000008360)	pou3f1 (ENSLBEG00000008388)	utp11 (ENSLBEG00000008407)	FHL3 (ENSLBEG00000008447)	rspo1 (ENSLBEG00000008477) #36	gnl2 (ENSLBEG00000008518) #35	dnali1 (ENSLBEG00000008589) #34	ENSLBEG00000008632	ENSLBEG00000008644	ENSLBEG00000008678	MAP7D1 (ENSLBEG00000008723) #21	THRAP3 (ENSLBEG00000008813) #22	sh3d21 (ENSLBEG00000008879) #23	eva1ba (ENSLBEG00000008911) ##24	ENSLBEG00000008935	STK40 (ENSLBEG00000008958) #25	OSCP1 (ENSLBEG00000009007) #27	ENSLBEG00000009056	mrps15 (ENSLBEG00000009087) #28	CSF3R (ENSLBEG00000009161) #29	GRIK3 (ENSLBEG00000009256) #30
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Perciformes	ANCESTRAL SPECIES	3	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Lumpfish	MODERN SPECIES	7	cnr2 (ENSCLMG00005009429)	akirin1 (ENSCLMG00005009427)	rhbdl2 (ENSCLMG00005009374)	GJA9 (ENSCLMG00005009373)	ENSCLMG00005009372	rragca (ENSCLMG00005009371)	pou3f1 (ENSCLMG00005009370)	utp11 (ENSCLMG00005009369)	FHL3 (ENSCLMG00005009368)	rspo1 (ENSCLMG00005009363) #36	gnl2 (ENSCLMG00005009359) #35	dnali1 (ENSCLMG00005009357) #34	snip1 (ENSCLMG00005009356)	MAP3K6 (ENSCLMG00005009166)	MAP7D1 (ENSCLMG00005009165) #21	THRAP3 (ENSCLMG00005009163) #22	sh3d21 (ENSCLMG00005009162) #23	eva1ba (ENSCLMG00005009161) ##24	STK40 (ENSCLMG00005009160) #25	OSCP1 (ENSCLMG00005009149) #27	ENSCLMG00005009147	mrps15 (ENSCLMG00005009146) #28	csf3r (ENSCLMG00005009144) #29	GRIK3 (ENSCLMG00005008787) #30	ZC3H12A (ENSCLMG00005008781) #31	INPP5B (ENSCLMG00005007032)	mtf1 (ENSCLMG00005007022)	yrdc (ENSCLMG00005007021)	MANEAL (ENSCLMG00005007019)	LIN28A (ENSCLMG00005007018)	mecr (ENSCLMG00005006881)
Stickleback	MODERN SPECIES	19	akirin1 (ENSGACG00000013657)	rhbdl2 (ENSGACG00000013668)	GJA9 (ENSGACG00000013675)	ENSGACG00000013676	rragca (ENSGACG00000013678)	pou3f1 (ENSGACG00000013679)	utp11 (ENSGACG00000013680)	FHL3 (ENSGACG00000013685)	rspo1 (ENSGACG00000013691) #36	gnl2 (ENSGACG00000013692) #35	dnali1 (ENSGACG00000013717) #34	snip1 (ENSGACG00000013718)	MAP3K6 (ENSGACG00000013722)	ENSGACG00000013737 #21	ENSGACG00000013740 #21	THRAP3 (ENSGACG00000013745) #22	sh3d21 (ENSGACG00000013749) #23	eva1ba (ENSGACG00000013751) ##24	STK40 (ENSGACG00000013752) #25	OSCP1 (ENSGACG00000013774) #27	mrps15 (ENSGACG00000013792) #28	csf3r (ENSGACG00000013795) #29	ENSGACG00000013798	GRIK3 (ENSGACG00000013802) #30	ZC3H12A (ENSGACG00000013859) #31	ENSGACG00000013863	INPP5B (ENSGACG00000013866)	mtf1 (ENSGACG00000013875)	yrdc (ENSGACG00000013878)	ENSGACG00000013885	MANEAL (ENSGACG00000013887)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a	ENSGT00940000156592
Channel bull blenny	MODERN SPECIES	7	SRSF10 (ENSCGOG00000015889)	cnr2 (ENSCGOG00000015887)	akirin1 (ENSCGOG00000015860)	rhbdl2 (ENSCGOG00000015848)	ENSCGOG00000015842	rragca (ENSCGOG00000015760)	ENSCGOG00000015756	pou3f1 (ENSCGOG00000015755)	utp11 (ENSCGOG00000015727)	FHL3 (ENSCGOG00000015722)	rspo1 (ENSCGOG00000015715) #36	gnl2 (ENSCGOG00000015253) #35	dnali1 (ENSCGOG00000015240) #34	SNIP1 (ENSCGOG00000015239) #33	MAP3K6 (ENSCGOG00000014586)	ENSCGOG00000014542 #22	ENSCGOG00000014538	eva1ba (ENSCGOG00000014536) ##24	STK40 (ENSCGOG00000014493) #25	OSCP1 (ENSCGOG00000014351) #27	ENSCGOG00000014342	mrps15 (ENSCGOG00000014339) #28	csf3r (ENSCGOG00000014334) #29	GRIK3 (ENSCGOG00000013322) #30	ZC3H12A (ENSCGOG00000013293) #31	INPP5B (ENSCGOG00000012194)	mtf1 (ENSCGOG00000012126)	yrdc (ENSCGOG00000012124)	MANEAL (ENSCGOG00000012121)	LIN28A (ENSCGOG00000012118)	mecr (ENSCGOG00000012059)
Pike perch	MODERN SPECIES	116												dnali1 (ENSSLUG00000005235) #34	snip1 (ENSSLUG00000005225)	MAP3K6 (ENSSLUG00000003332)	MAP7D1 (ENSSLUG00000002922) #21	THRAP3 (ENSSLUG00000002906) #22	sh3d21 (ENSSLUG00000002896) #23	eva1ba (ENSSLUG00000002889) ##24	STK40 (ENSSLUG00000002877) #25	OSCP1 (ENSSLUG00000002865) #27	ENSSLUG00000002857	mrps15 (ENSSLUG00000023350) #28	csf3r (ENSSLUG00000023341) #29	GRIK3 (ENSSLUG00000023219) #30	ENSSLUG00000023196	ZC3H12A (ENSSLUG00000023191) #31	ENSSLUG00000023188	INPP5B (ENSSLUG00000021701)	mtf1 (ENSSLUG00000021588)	yrdc (ENSSLUG00000021583)	MANEAL (ENSSLUG00000021577)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Gilthead seabream	MODERN SPECIES	8	cnr2 (ENSSAUG00010015051)	akirin1 (ENSSAUG00010015045)	rhbdl2 (ENSSAUG00010015042)	GJA9 (ENSSAUG00010015040)	ENSSAUG00010015039	rragca (ENSSAUG00010015034)	pou3f1 (ENSSAUG00010015032)	utp11 (ENSSAUG00010015030)	FHL3 (ENSSAUG00010015024)	rspo1 (ENSSAUG00010015022) #36	gnl2 (ENSSAUG00010015013) #35	dnali1 (ENSSAUG00010015007) #34	snip1 (ENSSAUG00010015005)	MAP3K6 (ENSSAUG00010020734)	MAP7D1 (ENSSAUG00010020726) #21	THRAP3 (ENSSAUG00010020723) #22	sh3d21 (ENSSAUG00010020721) #23	eva1ba (ENSSAUG00010020720) ##24	STK40 (ENSSAUG00010020718) #25	OSCP1 (ENSSAUG00010020717) #27	ENSSAUG00010020716	mrps15 (ENSSAUG00010020715) #28	csf3r (ENSSAUG00010020713) #29	GRIK3 (ENSSAUG00010017988) #30	ZC3H12A (ENSSAUG00010017948) #31	ENSSAUG00010017943	INPP5B (ENSSAUG00010017637)	mtf1 (ENSSAUG00010017599)	yrdc (ENSSAUG00010017597)	MANEAL (ENSSAUG00010017595)	LIN28A (ENSSAUG00010017594)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000154450.uc	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a	ENSGT00940000156592
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005010153	si:ch211-225p5.8 (ENSLCRG00005010109)	KCNE1 (ENSLCRG00005010097)	dnajc28 (ENSLCRG00005010096)	ENSLCRG00005010093	rragca (ENSLCRG00005010089)	pou3f1 (ENSLCRG00005010081)	utp11 (ENSLCRG00005010070)	FHL3 (ENSLCRG00005010057)	rspo1 (ENSLCRG00005010051) #36	gnl2 (ENSLCRG00005010011) #35	dnali1 (ENSLCRG00005009982) #34	snip1 (ENSLCRG00005009965)	ENSLCRG00005006336	MAP7D1 (ENSLCRG00005005931) #21	THRAP3 (ENSLCRG00005005916) #22	sh3d21 (ENSLCRG00005005906) #23	eva1ba (ENSLCRG00005005900) ##24	STK40 (ENSLCRG00005005869) #25	OSCP1 (ENSLCRG00005005741) #27	ENSLCRG00005005712	mrps15 (ENSLCRG00005005702) #28	csf3r (ENSLCRG00005005672) #29	GRIK3 (ENSLCRG00005005377) #30	ZC3H12A (ENSLCRG00005005327) #31	ENSLCRG00005005318	INPP5B (ENSLCRG00005003620)	mtf1 (ENSLCRG00005003083)	yrdc (ENSLCRG00005002976)	MANEAL (ENSLCRG00005012059)	LIN28A (ENSLCRG00005012058)
European seabass	MODERN SPECIES	6	ENSDLAG00005007393	SRSF10 (ENSDLAG00005029184)	cnr2 (ENSDLAG00005033223)	rhbdl2 (ENSDLAG00005007466)	GJA9 (ENSDLAG00005007475)	ENSDLAG00005029266	rragca (ENSDLAG00005007481)	pou3f1 (ENSDLAG00005029296)	utp11 (ENSDLAG00005007490)	FHL3 (ENSDLAG00005007500)	rspo1 (ENSDLAG00005007510) #36	gnl2 (ENSDLAG00005007540) #35	dnali1 (ENSDLAG00005034656) #34	ENSDLAG00005008475	MAP7D1 (ENSDLAG00005009499) #21	THRAP3 (ENSDLAG00005009555) #22	sh3d21 (ENSDLAG00005009583) #23	eva1ba (ENSDLAG00005029823) ##24	STK40 (ENSDLAG00005009633) #25	OSCP1 (ENSDLAG00005009654) #27	mrps15 (ENSDLAG00005030986) #28	csf3r (ENSDLAG00005009735) #29	GRIK3 (ENSDLAG00005009845) #30	ZC3H12A (ENSDLAG00005011869) #31	ENSDLAG00005032500	INPP5B (ENSDLAG00005011892)	mtf1 (ENSDLAG00005012917)	MANEAL (ENSDLAG00005027752)	yrdc (ENSDLAG00005013053)	ENSDLAG00005034052	ENSDLAG00005013081
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291
Atherinomorphae	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Mangrove rivulus	MODERN SPECIES	1204																ENSKMAG00000005707 #22
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015020175	FABP10A (ENSNFUG00015020177)	PNRC2 (ENSNFUG00015020180)	cnr2 (ENSNFUG00015020184)	ENSNFUG00015020185	ENSNFUG00015020190	POU3F1 (ENSNFUG00015020193)	utp11 (ENSNFUG00015020196)	FHL3 (ENSNFUG00015020200)	RSPO1 (ENSNFUG00015020203) #36	GNL2 (ENSNFUG00015020230) #35	DNALI1 (ENSNFUG00015020891) #34	SNIP1 (ENSNFUG00015020894) #33	MAP3K6 (ENSNFUG00015000154)	MAP7D1 (ENSNFUG00015000327) #21	THRAP3 (ENSNFUG00015000347) #22	SH3D21 (ENSNFUG00015000370) #23	EVA1BA (ENSNFUG00015000393) ##24	STK40 (ENSNFUG00015000432) #25	CNFN (ENSNFUG00015000488)	MRPS15 (ENSNFUG00015000499) #28	GRIK3 (ENSNFUG00015000661) #30	ZC3H12A (ENSNFUG00015000897) #31	ENSNFUG00015000899	INPP5B (ENSNFUG00015000938)	MTF1 (ENSNFUG00015001054)	YRDC (ENSNFUG00015001069)	MANEAL (ENSNFUG00015001077)	LIN28A (ENSNFUG00015001082)	MECR (ENSNFUG00015001090)	SMPDL3B (ENSNFUG00015001097)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
NAME_4	ANCESTRAL SPECIES	55	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000171773	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Mummichog	MODERN SPECIES	2410															MAP7D1 (ENSFHEG00000000983) #21	THRAP3 (ENSFHEG00000000989) #22	sh3d21 (ENSFHEG00000000996) #23	eva1ba (ENSFHEG00000001000) ##24	STK40 (ENSFHEG00000001002) #25	OSCP1 (ENSFHEG00000001008) #27	ENSFHEG00000001010	mrps15 (ENSFHEG00000001013) #28	csf3r (ENSFHEG00000001015) #29	GRIK3 (ENSFHEG00000001018) #30	ZC3H12A (ENSFHEG00000001019) #31	INPP5B (ENSFHEG00000001022)	mtf1 (ENSFHEG00000001026)	yrdc (ENSFHEG00000001029)	MANEAL (ENSFHEG00000001033)	ENSFHEG00000001035	LIN28A (ENSFHEG00000001038)
Sheepshead minnow	MODERN SPECIES	118	cnr2 (ENSCVAG00000018091)	akirin1 (ENSCVAG00000018071)	rhbdl2 (ENSCVAG00000018052)	GJA9 (ENSCVAG00000018024)	ENSCVAG00000018007	rragca (ENSCVAG00000017979)	pou3f1 (ENSCVAG00000017958)	utp11 (ENSCVAG00000000900)	FHL3 (ENSCVAG00000017747)	rspo1 (ENSCVAG00000000459) #36	gnl2 (ENSCVAG00000017712) #35	dnali1 (ENSCVAG00000017701) #34	snip1 (ENSCVAG00000017689)	MAP3K6 (ENSCVAG00000017684)	MAP7D1 (ENSCVAG00000017671) #21	THRAP3 (ENSCVAG00000017634) #22	sh3d21 (ENSCVAG00000017624) #23	eva1ba (ENSCVAG00000017604) ##24	STK40 (ENSCVAG00000017594) #25	OSCP1 (ENSCVAG00000017554) #27	ENSCVAG00000017521	mrps15 (ENSCVAG00000017500) #28	csf3r (ENSCVAG00000017491) #29	GRIK3 (ENSCVAG00000017478) #30	ZC3H12A (ENSCVAG00000017420) #31	ENSCVAG00000017412	INPP5B (ENSCVAG00000017401)	mtf1 (ENSCVAG00000017389)	yrdc (ENSCVAG00000017355)	MANEAL (ENSCVAG00000017347)	LIN28A (ENSCVAG00000017320)
Poeciliinae	ANCESTRAL SPECIES		ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Poecilia	ANCESTRAL SPECIES		ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
NAME_6	ANCESTRAL SPECIES	152											ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000171773	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00530000068429	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Sailfin molly	MODERN SPECIES	684											gnl2 (ENSPLAG00000012483) #35	dnali1 (ENSPLAG00000000807) #34	SNIP1 (ENSPLAG00000012467) #33	MAP3K6 (ENSPLAG00000012456)	MAP7D1 (ENSPLAG00000000527) #21	THRAP3 (ENSPLAG00000000635) #22	sh3d21 (ENSPLAG00000012341) #23	eva1ba (ENSPLAG00000012312) ##24	STK40 (ENSPLAG00000012294) #25
Amazon molly	MODERN SPECIES	337											gnl2 (ENSPFOG00000012893) #35	dnali1 (ENSPFOG00000012981) #34	SNIP1 (ENSPFOG00000013016) #33	MAP3K6 (ENSPFOG00000013047)	MAP7D1 (ENSPFOG00000013255) #21	THRAP3 (ENSPFOG00000013297) #22	sh3d21 (ENSPFOG00000013375) #23	eva1ba (ENSPFOG00000013421) ##24	STK40 (ENSPFOG00000013431) #25	OSCP1 (ENSPFOG00000013493) #27	ENSPFOG00000013535	mrps15 (ENSPFOG00000013553) #28	csf3r (ENSPFOG00000013594) #29	ENSPFOG00000022696	GRIK3 (ENSPFOG00000013674) #30	ZC3H12A (ENSPFOG00000013935) #31	ENSPFOG00000013949	ENSPFOG00000022057	INPP5B (ENSPFOG00000013954)	mtf1 (ENSPFOG00000013962)	yrdc (ENSPFOG00000023097)
Guppy	MODERN SPECIES	446	pnrc2 (ENSPREG00000006242)	cnr2 (ENSPREG00000006231)	akirin1 (ENSPREG00000006214)	rhbdl2 (ENSPREG00000006169)	ENSPREG00000006142	rragca (ENSPREG00000006113)	pou3f1 (ENSPREG00000006101)	utp11 (ENSPREG00000006068)	FHL3 (ENSPREG00000006051)	rspo1 (ENSPREG00000006040) #36	gnl2 (ENSPREG00000005988) #35	dnali1 (ENSPREG00000005961) #34	snip1 (ENSPREG00000005952)	MAP3K6 (ENSPREG00000005903)	MAP7D1 (ENSPREG00000005854) #21	THRAP3 (ENSPREG00000005816) #22	sh3d21 (ENSPREG00000005794) #23	eva1ba (ENSPREG00000005771) ##24	STK40 (ENSPREG00000005733) #25	OSCP1 (ENSPREG00000005686) #27	ENSPREG00000005621	mrps15 (ENSPREG00000005592) #28	csf3r (ENSPREG00000005562) #29	GRIK3 (ENSPREG00000005481) #30	ZC3H12A (ENSPREG00000005453) #31	ENSPREG00000005442	INPP5B (ENSPREG00000005365)	mtf1 (ENSPREG00000005331)	yrdc (ENSPREG00000005285)	MANEAL (ENSPREG00000005276)	LIN28A (ENSPREG00000005259)
Platyfish	MODERN SPECIES	17	pnrc2 (ENSXMAG00000019531)	cnr2 (ENSXMAG00000013232)	akirin1 (ENSXMAG00000013230)	rhbdl2 (ENSXMAG00000002343)	ENSXMAG00000013229	rragca (ENSXMAG00000026290)	pou3f1 (ENSXMAG00000019529)	utp11 (ENSXMAG00000013219)	FHL3 (ENSXMAG00000029691)	rspo1 (ENSXMAG00000028817) #36	gnl2 (ENSXMAG00000014898) #35	dnali1 (ENSXMAG00000014886) #34	SNIP1 (ENSXMAG00000014885) #33	ENSXMAG00000014853	MAP7D1 (ENSXMAG00000014815) #21	THRAP3 (ENSXMAG00000014797) #22	sh3d21 (ENSXMAG00000001593) #23	eva1ba (ENSXMAG00000001589) ##24	STK40 (ENSXMAG00000029028) #25	OSCP1 (ENSXMAG00000014752) #27	ENSXMAG00000024500	mrps15 (ENSXMAG00000028874) #28	csf3r (ENSXMAG00000014732) #29	GRIK3 (ENSXMAG00000014647) #30	ZC3H12A (ENSXMAG00000014646) #31	ENSXMAG00000021281	INPP5B (ENSXMAG00000014629)	mtf1 (ENSXMAG00000014614)	yrdc (ENSXMAG00000014606)	MANEAL (ENSXMAG00000014596)	LIN28A (ENSXMAG00000014593)
Oryzias	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Javanese ricefish	MODERN SPECIES	7	akirin1 (ENSOJAG00000008552)	rhbdl2 (ENSOJAG00000008540)	GJA9 (ENSOJAG00000008511)	MYCBP (ENSOJAG00000008501)	rragca (ENSOJAG00000008450)	pou3f1 (ENSOJAG00000008412)	utp11 (ENSOJAG00000008374)	FHL3 (ENSOJAG00000008350)	rspo1 (ENSOJAG00000008324) #36	gnl2 (ENSOJAG00000008221) #35	dnali1 (ENSOJAG00000008190) #34	SNIP1 (ENSOJAG00000008177) #33	ENSOJAG00000006023	MAP7D1 (ENSOJAG00000005723) #21	ENSOJAG00000005706	THRAP3 (ENSOJAG00000005670) #22	sh3d21 (ENSOJAG00000005635) #23	eva1ba (ENSOJAG00000005620) ##24	STK40 (ENSOJAG00000005584) #25	ENSOJAG00000005568	OSCP1 (ENSOJAG00000005328) #27	CSF3R (ENSOJAG00000005292) #29	GRIK3 (ENSOJAG00000004802) #30	ENSOJAG00000004702	ZC3H12A (ENSOJAG00000004692) #31	ENSOJAG00000004681	INPP5B (ENSOJAG00000003535)	mtf1 (ENSOJAG00000003279)	yrdc (ENSOJAG00000003259)	MANEAL (ENSOJAG00000003254)	LIN28A (ENSOJAG00000003246)
Indian medaka	MODERN SPECIES	5	cnr2 (ENSOMEG00000019931)	akirin1 (ENSOMEG00000019917)	rhbdl2 (ENSOMEG00000019884)	GJA9 (ENSOMEG00000019858)	ENSOMEG00000019842	MYCBP (ENSOMEG00000019821)	rragca (ENSOMEG00000000525)	FHL3 (ENSOMEG00000019712)	utp11 (ENSOMEG00000019654)	rspo1 (ENSOMEG00000019637) #36	gnl2 (ENSOMEG00000019611) #35	dnali1 (ENSOMEG00000019563) #34	snip1 (ENSOMEG00000019541)	MAP3K6 (ENSOMEG00000019496)	MAP7D1 (ENSOMEG00000019294) #21	THRAP3 (ENSOMEG00000019164) #22	sh3d21 (ENSOMEG00000019023) #23	eva1ba (ENSOMEG00000018998) ##24	STK40 (ENSOMEG00000018961) #25	OSCP1 (ENSOMEG00000018874) #27	ENSOMEG00000018849	mrps15 (ENSOMEG00000000701) #28	csf3r (ENSOMEG00000000488) #29	GRIK3 (ENSOMEG00000018771) #30	ZC3H12A (ENSOMEG00000000483) #31	ENSOMEG00000018697	INPP5B (ENSOMEG00000018665)	mtf1 (ENSOMEG00000018579)	yrdc (ENSOMEG00000018550)	MANEAL (ENSOMEG00000000478)	ENSOMEG00000018521
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Japanese Medaka HdrR	MODERN SPECIES	7	akirin1 (ENSORLG00000014770)	rhbdl2 (ENSORLG00000014754)	GJA9 (ENSORLG00000022080)	MYCBP (ENSORLG00000024478)	rragca (ENSORLG00000014739)	pou3f1 (ENSORLG00000014708)	utp11 (ENSORLG00000014702)	ENSORLG00000021906	FHL3 (ENSORLG00000014671)	rspo1 (ENSORLG00000014653) #36	gnl2 (ENSORLG00000014645) #35	ENSORLG00000014620 #34	SNIP1 (ENSORLG00000014602) #33	ENSORLG00000014582	MAP7D1 (ENSORLG00000014562) #21	THRAP3 (ENSORLG00000014550) #22	sh3d21 (ENSORLG00000014532) #23	eva1ba (ENSORLG00000014522) ##24	STK40 (ENSORLG00000014517) #25	OSCP1 (ENSORLG00000014500) #27	ENSORLG00000028871	mrps15 (ENSORLG00000014487) #28	CSF3R (ENSORLG00000014472) #29	ENSORLG00000026090	GRIK3 (ENSORLG00000014461) #30	ZC3H12A (ENSORLG00000014448) #31	INPP5B (ENSORLG00000014438)	mtf1 (ENSORLG00000014411)	yrdc (ENSORLG00000014393)	MANEAL (ENSORLG00000014388)	ENSORLG00000028106
Chinese medaka	MODERN SPECIES	1121								utp11 (ENSOSIG00000008439)	FHL3 (ENSOSIG00000008444)	rspo1 (ENSOSIG00000008445) #36	gnl2 (ENSOSIG00000008451) #35	dnali1 (ENSOSIG00000008453) #34	SNIP1 (ENSOSIG00000008454) #33	ENSOSIG00000008457	MAP7D1 (ENSOSIG00000008559) #21	THRAP3 (ENSOSIG00000008565) #22	sh3d21 (ENSOSIG00000008569) #23	eva1ba (ENSOSIG00000008574) ##24	STK40 (ENSOSIG00000008577) #25	OSCP1 (ENSOSIG00000008586) #27	ENSOSIG00000008733	mrps15 (ENSOSIG00000008734) #28	csf3r (ENSOSIG00000008736) #29	GRIK3 (ENSOSIG00000008739) #30	ENSOSIG00000011075	ZC3H12A (ENSOSIG00000011076) #31	ENSOSIG00000011078	INPP5B (ENSOSIG00000011093)	mtf1 (ENSOSIG00000012847)	yrdc (ENSOSIG00000012916)	MANEAL (ENSOSIG00000012920)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00990000203803	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000178211	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00600000085609	ENSGT00940000178211	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Haplochromini	ANCESTRAL SPECIES	6	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00940000166920	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Burton s mouthbrooder	MODERN SPECIES	340	pnrc2 (ENSHBUG00000010043)	cnr2 (ENSHBUG00000010030)	akirin1 (ENSHBUG00000010024)	rhbdl2 (ENSHBUG00000009992)	MYCBP (ENSHBUG00000009957)	rragca (ENSHBUG00000009931)	pou3f1 (ENSHBUG00000009911)	utp11 (ENSHBUG00000009895)	FHL3 (ENSHBUG00000009864)	rspo1 (ENSHBUG00000009811) #36	ENSHBUG00000000835	dnali1 (ENSHBUG00000009777) #34	SNIP1 (ENSHBUG00000009756) #33	ENSHBUG00000009741	MAP7D1 (ENSHBUG00000009652) #21	THRAP3 (ENSHBUG00000009602) #22	sh3d21 (ENSHBUG00000009579) #23	eva1ba (ENSHBUG00000009558) ##24	STK40 (ENSHBUG00000009547) #25	OSCP1 (ENSHBUG00000009513) #27	ENSHBUG00000009469	mrps15 (ENSHBUG00000009456) #28	csf3r (ENSHBUG00000009429) #29	GRIK3 (ENSHBUG00000009396) #30	ZC3H12A (ENSHBUG00000009356) #31	INPP5B (ENSHBUG00000009350)	mtf1 (ENSHBUG00000009314)	yrdc (ENSHBUG00000009298)	MANEAL (ENSHBUG00000009290)	LIN28A (ENSHBUG00000009265)	smpdl3b (ENSHBUG00000009222)
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00940000166920	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
P. nyererei	MODERN SPECIES	362	pnrc2 (ENSPNYG00000012942)	cnr2 (ENSPNYG00000012954)	akirin1 (ENSPNYG00000012970)	rhbdl2 (ENSPNYG00000013006)	MYCBP (ENSPNYG00000013028)	rragca (ENSPNYG00000013099)	pou3f1 (ENSPNYG00000013130)	utp11 (ENSPNYG00000013140)	FHL3 (ENSPNYG00000013162)	rspo1 (ENSPNYG00000013177) #36	ENSPNYG00000013195	dnali1 (ENSPNYG00000013211) #34	SNIP1 (ENSPNYG00000013230) #33	ENSPNYG00000013247	MAP7D1 (ENSPNYG00000013285) #21	THRAP3 (ENSPNYG00000013314) #22	sh3d21 (ENSPNYG00000013339) #23	eva1ba (ENSPNYG00000013357) ##24	STK40 (ENSPNYG00000013365) #25	ENSPNYG00000013399 #27	ENSPNYG00000013414	mrps15 (ENSPNYG00000013431) #28	csf3r (ENSPNYG00000013467) #29	GRIK3 (ENSPNYG00000013498) #30	ZC3H12A (ENSPNYG00000013534) #31	ENSPNYG00000013556	INPP5B (ENSPNYG00000013593)	mtf1 (ENSPNYG00000013739)	yrdc (ENSPNYG00000013956)	MANEAL (ENSPNYG00000013969)	LIN28A (ENSPNYG00000014005)
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00940000166920	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Eastern happy	MODERN SPECIES	2	cnr2 (ENSACLG00000000646)	akirin1 (ENSACLG00000000618)	rhbdl2 (ENSACLG00000000595)	MYCBP (ENSACLG00000000565)	rragca (ENSACLG00000000534)	pou3f1 (ENSACLG00000000389)	utp11 (ENSACLG00000000339)	FHL3 (ENSACLG00000000312)	rspo1 (ENSACLG00000000298) #36	dnali1 (ENSACLG00000000265) #34	ENSACLG00000000115	SNIP1 (ENSACLG00000000108) #33	ENSACLG00000000084	MAP7D1 (ENSACLG00000000048) #21	ENSACLG00000027855	THRAP3 (ENSACLG00000027851) #22	sh3d21 (ENSACLG00000027848) #23	eva1ba (ENSACLG00000027847) ##24	STK40 (ENSACLG00000027839) #25	OSCP1 (ENSACLG00000027829) #27	ENSACLG00000027824	mrps15 (ENSACLG00000027820) #28	csf3r (ENSACLG00000027809) #29	GRIK3 (ENSACLG00000027806) #30	ZC3H12A (ENSACLG00000027801) #31	ENSACLG00000027799	INPP5B (ENSACLG00000027782)	mtf1 (ENSACLG00000027779)	yrdc (ENSACLG00000027775)	MANEAL (ENSACLG00000027772)	LIN28A (ENSACLG00000027769)
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005007606	xrcc1 (ENSMZEG00005007596)	drd2l (ENSMZEG00005007578)	ethe1 (ENSMZEG00005007552)	ethe1 (ENSMZEG00005007535)	ENSMZEG00005007520	ENSMZEG00005007501	irgq2 (ENSMZEG00005007489)	ENSMZEG00005007454	cox5aa (ENSMZEG00005007429)	gnl2 (ENSMZEG00005007393) #35	dnali1 (ENSMZEG00005007377) #34	SNIP1 (ENSMZEG00005007365) #33	ENSMZEG00005007342	MAP7D1 (ENSMZEG00005007251) #21	THRAP3 (ENSMZEG00005007212) #22	sh3d21 (ENSMZEG00005007196) #23	eva1ba (ENSMZEG00005007187) ##24	STK40 (ENSMZEG00005007149) #25	OSCP1 (ENSMZEG00005007120) #27	ENSMZEG00005007095	mrps15 (ENSMZEG00005007070) #28	csf3r (ENSMZEG00005007036) #29	GRIK3 (ENSMZEG00005007006) #30	ZC3H12A (ENSMZEG00005006997) #31	ENSMZEG00005006991	ENSMZEG00005006982	INPP5B (ENSMZEG00005006964)	mtf1 (ENSMZEG00005006956)	yrdc (ENSMZEG00005006948)	MANEAL (ENSMZEG00005006934)
Lyretail cichlid	MODERN SPECIES	311	pnrc2 (ENSNBRG00000010605)	cnr2 (ENSNBRG00000010586)	akirin1 (ENSNBRG00000010549)	rhbdl2 (ENSNBRG00000010511)	MYCBP (ENSNBRG00000010493)	rragca (ENSNBRG00000010467)	pou3f1 (ENSNBRG00000010456)	utp11 (ENSNBRG00000010435)	FHL3 (ENSNBRG00000010416)	rspo1 (ENSNBRG00000010347) #36	gnl2 (ENSNBRG00000010291) #35	dnali1 (ENSNBRG00000010268) #34	SNIP1 (ENSNBRG00000010257) #33	ENSNBRG00000010049	MAP7D1 (ENSNBRG00000010005) #21	THRAP3 (ENSNBRG00000009991) #22	sh3d21 (ENSNBRG00000009956) #23	eva1ba (ENSNBRG00000009946) ##24	STK40 (ENSNBRG00000009915) #25	OSCP1 (ENSNBRG00000009883) #27	ENSNBRG00000009860	mrps15 (ENSNBRG00000009851) #28	csf3r (ENSNBRG00000009712) #29	ENSNBRG00000009681	GRIK3 (ENSNBRG00000009631) #30	ZC3H12A (ENSNBRG00000009607) #31	ENSNBRG00000009581	ENSNBRG00000009571	ENSNBRG00000009559	mtf1 (ENSNBRG00000009532)	yrdc (ENSNBRG00000009475)
Nile tilapia	MODERN SPECIES	2	cnr2 (ENSONIG00000016314)	akirin1 (ENSONIG00000039753)	rhbdl2 (ENSONIG00000016311)	MYCBP (ENSONIG00000035578)	rragc (ENSONIG00000032190)	pou3f1 (ENSONIG00000021113)	utp11 (ENSONIG00000033069)	fhl3 (ENSONIG00000013661)	rspo1 (ENSONIG00000016302) #36	ENSONIG00000016291	dnali1 (ENSONIG00000016300) #34	SNIP1 (ENSONIG00000016290) #33	ENSONIG00000041284	ENSONIG00000016285	MAP7D1 (ENSONIG00000016283) #21	THRAP3 (ENSONIG00000016278) #22	sh3d21 (ENSONIG00000016273) #23	eva1b (ENSONIG00000042590) ##24	STK40 (ENSONIG00000037285) #25	OSCP1 (ENSONIG00000016265) #27	ENSONIG00000043059	mrps15 (ENSONIG00000016261) #28	csf3r (ENSONIG00000016254) #29	GRIK3 (ENSONIG00000016238) #30	ZC3H12A (ENSONIG00000016235) #31	ENSONIG00000037129	ENSONIG00000030694	INPP5B (ENSONIG00000016229)	mtf1 (ENSONIG00000016218)	yrdc (ENSONIG00000016213)	MANEAL (ENSONIG00000030626)
Midas cichlid	MODERN SPECIES	668	cnr2 (ENSACIG00000018688)	akirin1 (ENSACIG00000018678)	rhbdl2 (ENSACIG00000018661)	ENSACIG00000018646	MYCBP (ENSACIG00000018598)	rragca (ENSACIG00000018548)	pou3f1 (ENSACIG00000018538)	utp11 (ENSACIG00000018523)	FHL3 (ENSACIG00000018508)	rspo1 (ENSACIG00000018378) #36	gnl2 (ENSACIG00000018346) #35	dnali1 (ENSACIG00000018337) #34	SNIP1 (ENSACIG00000018325) #33	ENSACIG00000018194	MAP7D1 (ENSACIG00000018142) #21	THRAP3 (ENSACIG00000018110) #22	ENSACIG00000018107	sh3d21 (ENSACIG00000018083) #23	eva1ba (ENSACIG00000018069) ##24	STK40 (ENSACIG00000018038) #25	OSCP1 (ENSACIG00000018007) #27	ENSACIG00000017948	mrps15 (ENSACIG00000017933) #28	csf3r (ENSACIG00000017809) #29	GRIK3 (ENSACIG00000017772) #30	ZC3H12A (ENSACIG00000017750) #31	INPP5B (ENSACIG00000017714)	mtf1 (ENSACIG00000017387)	yrdc (ENSACIG00000017330)	MANEAL (ENSACIG00000017324)	ENSACIG00000017313
Pomacentridae	ANCESTRAL SPECIES	35	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553.f #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553.f #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Amphiprion	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553.f #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a.b #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT00940000166129	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a.a #31	ENSGT00990000203803	ENSGT00990000204035	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b.i
Orange clownfish	MODERN SPECIES	21	cnr2 (ENSAPEG00000004941)	akirin1 (ENSAPEG00000005009)	rhbdl2 (ENSAPEG00000005028)	GJA9 (ENSAPEG00000005061)	MYCBP (ENSAPEG00000005073)	rragca (ENSAPEG00000005106)	pou3f1 (ENSAPEG00000005174)	utp11 (ENSAPEG00000005214)	FHL3 (ENSAPEG00000005272)	rspo1 (ENSAPEG00000005307) #36	gnl2 (ENSAPEG00000005375) #35	dnali1 (ENSAPEG00000005453) #34	SNIP1 (ENSAPEG00000005542) #33	MAP3K6 (ENSAPEG00000005570)	MAP7D1 (ENSAPEG00000005614) #21	THRAP3 (ENSAPEG00000005696) #22	sh3d21 (ENSAPEG00000005738) #23	eva1ba (ENSAPEG00000005773) ##24	STK40 (ENSAPEG00000005892) #25	OSCP1 (ENSAPEG00000005918) #27	ENSAPEG00000005981	mrps15 (ENSAPEG00000005965) #28	csf3r (ENSAPEG00000005997) #29	GRIK3 (ENSAPEG00000006019) #30	ZC3H12A (ENSAPEG00000006072) #31	ENSAPEG00000006078	INPP5B (ENSAPEG00000006094)	mtf1 (ENSAPEG00000006125)	yrdc (ENSAPEG00000006164)	MANEAL (ENSAPEG00000006178)	LIN28A (ENSAPEG00000006197)
Clown anemonefish	MODERN SPECIES	1296									FHL3 (ENSAOCG00000014316)	rspo1 (ENSAOCG00000014341) #36	gnl2 (ENSAOCG00000014396) #35	dnali1 (ENSAOCG00000014444) #34	SNIP1 (ENSAOCG00000014455) #33	MAP3K6 (ENSAOCG00000014625)	MAP7D1 (ENSAOCG00000014698) #21	THRAP3 (ENSAOCG00000014738) #22	sh3d21 (ENSAOCG00000000988) #23	eva1ba (ENSAOCG00000014770) ##24	STK40 (ENSAOCG00000000999) #25	OSCP1 (ENSAOCG00000001002) #27	ENSAOCG00000001009	mrps15 (ENSAOCG00000014871) #28	csf3r (ENSAOCG00000014880) #29	GRIK3 (ENSAOCG00000002707) #30	ZC3H12A (ENSAOCG00000014937) #31	ENSAOCG00000001847	ENSAOCG00000014980	INPP5B (ENSAOCG00000014998)	mtf1 (ENSAOCG00000015058)
Spiny chromis	MODERN SPECIES		pnrc2 (ENSAPOG00000024543)	cnr2 (ENSAPOG00000024541)	akirin1 (ENSAPOG00000024540)	rhbdl2 (ENSAPOG00000024538)	MYCBP (ENSAPOG00000024534)	rragca (ENSAPOG00000024532)	pou3f1 (ENSAPOG00000024530)	utp11 (ENSAPOG00000024525)	FHL3 (ENSAPOG00000024520)	rspo1 (ENSAPOG00000024512) #36	gnl2 (ENSAPOG00000024507) #35	dnali1 (ENSAPOG00000024495) #34	SNIP1 (ENSAPOG00000024490) #33	MAP3K6 (ENSAPOG00000024486)	MAP7D1 (ENSAPOG00000024474) #21	THRAP3 (ENSAPOG00000024453) #22	sh3d21 (ENSAPOG00000024442) #23	eva1ba (ENSAPOG00000024432) ##24	STK40 (ENSAPOG00000024423) #25	OSCP1 (ENSAPOG00000024408) #27	ENSAPOG00000024397	mrps15 (ENSAPOG00000024393) #28	csf3r (ENSAPOG00000024384) #29	GRIK3 (ENSAPOG00000024373) #30	ZC3H12A (ENSAPOG00000024328) #31	ENSAPOG00000024319	INPP5B (ENSAPOG00000024312)	mtf1 (ENSAPOG00000024298)	yrdc (ENSAPOG00000024293)	MANEAL (ENSAPOG00000024286)	LIN28A (ENSAPOG00000024256)
Bicolor damselfish	MODERN SPECIES	1002							pou3f1 (ENSSPAG00000017202)	utp11 (ENSSPAG00000017221)	FHL3 (ENSSPAG00000017252)	rspo1 (ENSSPAG00000017297) #36	gnl2 (ENSSPAG00000017473) #35	dnali1 (ENSSPAG00000017535) #34	SNIP1 (ENSSPAG00000017549) #33	MAP3K6 (ENSSPAG00000017562)	MAP7D1 (ENSSPAG00000017601) #21	ENSSPAG00000017651 #22	sh3d21 (ENSSPAG00000017676) #23	eva1ba (ENSSPAG00000017702) ##24
Pinecone sodierfish	MODERN SPECIES	7	cnr2 (ENSMMDG00005017851)	akirin1 (ENSMMDG00005017848)	rhbdl2 (ENSMMDG00005017845)	GJA9 (ENSMMDG00005017842)	MYCBP (ENSMMDG00005017840)	rragca (ENSMMDG00005017838)	pou3f1 (ENSMMDG00005017837)	utp11 (ENSMMDG00005017835)	FHL3 (ENSMMDG00005017832)	rspo1 (ENSMMDG00005017827) #36	gnl2 (ENSMMDG00005017817) #35	dnali1 (ENSMMDG00005017815) #34	snip1 (ENSMMDG00005017814)	MAP3K6 (ENSMMDG00005015884)	MAP7D1 (ENSMMDG00005015855) #21	THRAP3 (ENSMMDG00005015833) #22	sh3d21 (ENSMMDG00005015819) #23	eva1ba (ENSMMDG00005015816) ##24	STK40 (ENSMMDG00005015813) #25	OSCP1 (ENSMMDG00005015784) #27	ENSMMDG00005015782	mrps15 (ENSMMDG00005015781) #28	csf3r (ENSMMDG00005015763) #29	GRIK3 (ENSMMDG00005015674) #30	ENSMMDG00005015659	ZC3H12A (ENSMMDG00005015627) #31	INPP5B (ENSMMDG00005013409)	mtf1 (ENSMMDG00005013384)	yrdc (ENSMMDG00005013382)	MANEAL (ENSMMDG00005013381)	LIN28A (ENSMMDG00005013379)
Cod	MODERN SPECIES	19	ENSGMOG00000022940	ENSGMOG00000033659	ENSGMOG00000029166	ENSGMOG00000028407	etfb (ENSGMOG00000009792)	ENSGMOG00000023830	ENSGMOG00000031015	iglon5 (ENSGMOG00000030867)	ENSGMOG00000024736	ENSGMOG00000023507	ENSGMOG00000019418 #16	ago1 (ENSGMOG00000019413) #15	dhdds (ENSGMOG00000001113)	ENSGMOG00000025369	MAP7D1 (ENSGMOG00000024856) #21	ENSGMOG00000035895 #22	ENSGMOG00000006557 #23	eva1ba (ENSGMOG00000033967) ##24	hint3 (ENSGMOG00000006588)	ENSGMOG00000034923	trmt11 (ENSGMOG00000006618)	RNF146 (ENSGMOG00000035264)	tent5ba (ENSGMOG00000019728)	zdhhc18a (ENSGMOG00000001179)	pigv (ENSGMOG00000001161)	ARID1A (ENSGMOG00000001024)	gpn2 (ENSGMOG00000001010)	GPATCH3 (ENSGMOG00000000991)	nr0b2a (ENSGMOG00000000984)	ENSGMOG00000024982	tpbgl (ENSGMOG00000026520)
Osteoglossiformes	ANCESTRAL SPECIES	101	ENSGT00940000159442	ENSGT01030000235133	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00940000165372	ENSGT00390000005813	ENSGT00950000183028.a.b.a	ENSGT00390000015257 #32	ENSGT00940000158871 #36	ENSGT00810000125524 #35	ENSGT00390000003012 #34	ENSGT00940000156553 #33	ENSGT00940000159398	ENSGT00950000182941.a.a.b.e.a #21	ENSGT00950000183163.a.a.ab #22	ENSGT00940000160627 #23	ENSGT00940000154096.b.b.b.b.b ##24	ENSGT00950000182986.b #25	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #28	ENSGT00940000158915 #29	ENSGT00940000159465 #30	ENSGT00940000155107.a.a #31	ENSGT00530000063402.a	ENSGT00940000156762	ENSGT00940000157291	ENSGT00390000015364.b	ENSGT00390000016054.b	ENSGT00940000153295.a
P. kingsleyae	MODERN SPECIES	185									meaf6 (ENSPKIG00000005531) #32	rspo1 (ENSPKIG00000005509) #36	gnl2 (ENSPKIG00000005438) #35	dnali1 (ENSPKIG00000005377) #34	SNIP1 (ENSPKIG00000005359) #33	ENSPKIG00000005338	map7d1a (ENSPKIG00000005222) #21	THRAP3 (ENSPKIG00000005150) #22	sh3d21 (ENSPKIG00000005110) #23	eva1ba (ENSPKIG00000005092) ##24	STK40 (ENSPKIG00000005059) #25	OSCP1 (ENSPKIG00000004997) #27	ENSPKIG00000004957	mrps15 (ENSPKIG00000004939) #28	csf3r (ENSPKIG00000004855) #29	GRIK3 (ENSPKIG00000004789) #30	zc3h12ab (ENSPKIG00000004769) #31	sf3a3 (ENSPKIG00000004719)	INPP5B (ENSPKIG00000004669)	mtf1 (ENSPKIG00000004616)	yrdc (ENSPKIG00000004574)	maneal (ENSPKIG00000004548)	lin28ab (ENSPKIG00000004532)
Asian bonytongue	MODERN SPECIES	9	rhbdl2 (ENSSFOG00015020519)	GJA9 (ENSSFOG00015020499)	MYCBP (ENSSFOG00015020481)	rragca (ENSSFOG00015020466)	pou3f1 (ENSSFOG00015029682)	utp11 (ENSSFOG00015020388)	FHL3 (ENSSFOG00015020369)	meaf6 (ENSSFOG00015020331) #32	rspo1 (ENSSFOG00015020311) #36	gnl2 (ENSSFOG00015020300) #35	dnali1 (ENSSFOG00015020284) #34	dnali1 (ENSSFOG00015020255) #34	SNIP1 (ENSSFOG00015020244) #33	ENSSFOG00015020153	map7d1a (ENSSFOG00015020090) #21	ENSSFOG00015020057 #22	sh3d21 (ENSSFOG00015020035) #23	ENSSFOG00015020021	ENSSFOG00015020010	lim2.5 (ENSSFOG00015019992)	ENSSFOG00015032389	ENSSFOG00015019971	ENSSFOG00015019955	xrcc1 (ENSSFOG00015019923)	drd2l (ENSSFOG00015019901)	ENSSFOG00015019876	ethe1 (ENSSFOG00015019848)	ENSSFOG00015019826	si:dkey-211g8.1 (ENSSFOG00015019812)	ENSSFOG00015019774	ENSSFOG00015019758
Osteoglossocephalai	ANCESTRAL SPECIES	446																ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b
Clupeocephala	ANCESTRAL SPECIES	19	ENSGT00950000183145.C	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b	ENSGT00940000154450.tc	ENSGT01090000260070.C.b	ENSGT00390000017974.ob	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Otomorpha	ANCESTRAL SPECIES	9	ENSGT00950000183145.C	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b	ENSGT00940000154450.tc	ENSGT01090000260070.C.b	ENSGT00390000017974.ob	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Clupeiformes	ANCESTRAL SPECIES	42									ENSGT01030000235133.c	ENSGT01090000260070.C.b	ENSGT00390000017974.ob	ENSGT00950000183028.a.b.b	ENSGT00390000015257.d #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.i	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Denticle herring	MODERN SPECIES	12	ENSDCDG00000011588	slc44a4 (ENSDCDG00000007527)	RNF5 (ENSDCDG00000007104)	ENSDCDG00000007061	ENSDCDG00000007050	mhc1zka (ENSDCDG00000006963)	ENSDCDG00000006887	gja9b (ENSDCDG00000006875)	mycbp (ENSDCDG00000005973)	ENSDCDG00000005859	ENSDCDG00000005755	fhl3b (ENSDCDG00000035449)	meaf6 (ENSDCDG00000035448) #32	stpg1 (ENSDCDG00000035447)	map7d1b (ENSDCDG00000035444) #21	thrap3b (ENSDCDG00000035440) #22	eva1bb (ENSDCDG00000035438) #24	LSM10 (ENSDCDG00000035437) #26	oscp1a (ENSDCDG00000035436) #27	zc3h12ab (ENSDCDG00000035435) #31	smim13 (ENSDCDG00000035434)	nedd9 (ENSDCDG00000035433)	TMEM170B (ENSDCDG00000035431)	HIVEP1 (ENSDCDG00000035429)	edn1 (ENSDCDG00000035426)	illr1 (ENSDCDG00000035425)	si:dkeyp-92c9.2 (ENSDCDG00000035424)	myo1g (ENSDCDG00000035308)	rxrba (ENSDCDG00000035254)	col11a2 (ENSDCDG00000035209)	hsd17b8 (ENSDCDG00000035184)
Atlantic herring	MODERN SPECIES	10	gabpb2a (ENSCHAG00000011246)	ENSCHAG00000011296	ctnnb2 (ENSCHAG00000011330)	ENSCHAG00000012419	ENSCHAG00000000551	ENSCHAG00000000596	ENSCHAG00000000655	ENSCHAG00000000674	gja9b (ENSCHAG00000000710)	mycbp (ENSCHAG00000000761)	rragca (ENSCHAG00000000775)	fhl3b (ENSCHAG00000000790)	meaf6 (ENSCHAG00000000917) #32	stpg1 (ENSCHAG00000001040)	map7d1b (ENSCHAG00000001085) #21	thrap3b (ENSCHAG00000001178) #22	eva1bb (ENSCHAG00000001235) #24	LSM10 (ENSCHAG00000001270) #26	oscp1a (ENSCHAG00000001289) #27	ENSCHAG00000001342	smim13 (ENSCHAG00000001366)	nedd9 (ENSCHAG00000001391)	TMEM170B (ENSCHAG00000001423)	HIVEP1 (ENSCHAG00000001481)	edn1 (ENSCHAG00000001595)	ENSCHAG00000001663	ENSCHAG00000001909	ENSCHAG00000001932	dlgap3 (ENSCHAG00000002240)	ENSCHAG00000002422	ENSCHAG00000002439
Otophysi	ANCESTRAL SPECIES	174	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011	ENSGT00940000163549
Characiphysae	ANCESTRAL SPECIES	91	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439	ENSGT00940000155107.a.a.b #31	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a	ENSGT01030000234543.A.b	ENSGT00940000160581	ENSGT00940000166166	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b	ENSGT00390000006954	ENSGT00940000165034
Channel catfish	MODERN SPECIES	5	ST3GAL1 (ENSIPUG00000004950)	ST3GAL1 (ENSIPUG00000004976)	khdrbs3 (ENSIPUG00000004984)	ENSIPUG00000005001	fam135b (ENSIPUG00000005028)	ENSIPUG00000005100	ENSIPUG00000005154	kcnk9 (ENSIPUG00000005285)	TRAPPC9 (ENSIPUG00000005309)	rragcb (ENSIPUG00000005440)	fhl3b (ENSIPUG00000005470)	ENSIPUG00000005538	meaf6 (ENSIPUG00000005566) #32	stpg1 (ENSIPUG00000005620)	map7d1b (ENSIPUG00000005646) #21	thrap3b (ENSIPUG00000005707) #22	eva1bb (ENSIPUG00000005771) #24	ENSIPUG00000005788	LSM10 (ENSIPUG00000005808) #26	oscp1a (ENSIPUG00000005816) #27	zc3h12ab (ENSIPUG00000005852) #31	ENSIPUG00000005858	sncb (ENSIPUG00000005865)	LRRTM2 (ENSIPUG00000005874)	CTNNA1 (ENSIPUG00000005901)	lrrtm2 (ENSIPUG00000005981)	MCHR2 (ENSIPUG00000005988)	tspan17 (ENSIPUG00000006010)	synpo (ENSIPUG00000006100)	dctn4 (ENSIPUG00000006111)	gpx3 (ENSIPUG00000006173)
Characiphysae_b	ANCESTRAL SPECIES	92	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439	ENSGT00940000155107.a.a.b #31	ENSGT00970000195294	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a	ENSGT01030000234543.A.b	ENSGT00940000160581	ENSGT00940000166166	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b	ENSGT00390000006954
Electric eel	MODERN SPECIES	898											rragcb (ENSEEEG00000021258)	fhl3b (ENSEEEG00000021257)	meaf6 (ENSEEEG00000021256) #32	stpg1 (ENSEEEG00000021255)	map7d1b (ENSEEEG00000021254) #21	thrap3b (ENSEEEG00000021253) #22	eva1bb (ENSEEEG00000021251) #24	LSM10 (ENSEEEG00000021247) #26	ENSEEEG00000021246
Characoidei	ANCESTRAL SPECIES	178	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439	ENSGT00940000155107.a.a.b #31	ENSGT00970000195294	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a
Red-bellied piranha	MODERN SPECIES	263						ENSPNAG00000004348	ENSPNAG00000028401	ENSPNAG00000028469	ENSPNAG00000028491	kcnk9 (ENSPNAG00000028505)	TRAPPC9 (ENSPNAG00000005622)	fhl3b (ENSPNAG00000004889)	meaf6 (ENSPNAG00000028667) #32	stpg1 (ENSPNAG00000004405)	map7d1b (ENSPNAG00000004418) #21	thrap3b (ENSPNAG00000028762) #22	eva1bb (ENSPNAG00000004796) #24	LSM10 (ENSPNAG00000028829) #26	oscp1a (ENSPNAG00000004456) #27	ENSPNAG00000005053	ENSPNAG00000028945
Mexicana tetra	MODERN SPECIES	65						FAM135B (ENSAMXG00000017175)	ENSAMXG00000036148	ENSAMXG00000019441	kcnk9 (ENSAMXG00000019517)	ENSAMXG00000038821	TRAPPC9 (ENSAMXG00000020787)	fhl3b (ENSAMXG00000032557)	meaf6 (ENSAMXG00000030458) #32	stpg1 (ENSAMXG00000020849)	map7d1b (ENSAMXG00000020859) #21	thrap3b (ENSAMXG00000020877) #22	eva1bb (ENSAMXG00000041367) #24	LSM10 (ENSAMXG00000025301) #26	oscp1a (ENSAMXG00000039731) #27	ENSAMXG00000041581	ENSAMXG00000031811	zc3h12ab (ENSAMXG00000029641) #31	ENSAMXG00000041625	ENSAMXG00000030542	sncb (ENSAMXG00000043895)
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00940000154725.j.a.a.a.a.a.a	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.b	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000159308	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234592.A.a.b.c	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	143		ENSGT00940000154725.j.a.a.a.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.b	ENSGT00940000154725.j.b.b	ENSGT00940000157280.l.b.a	ENSGT00940000156079.d	ENSGT00940000163557.C	ENSGT00940000159791.w	ENSGT00390000006486.i.b	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g	ENSGT00390000015257.b.b #32	ENSGT00390000011598.b	ENSGT00950000182941.a.a.b.e.b.b #21	ENSGT00950000183163.a.a.bb.a #22	ENSGT00940000154096.b.b.b.b.a.c #24	ENSGT00510000048364 #26	ENSGT00390000004808.f.a #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a #31	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00390000015257.a #32	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a #21	ENSGT00950000183163.a.a.bb.b #22	ENSGT00940000154096.b.b.b.b.a.d #24	ENSGT00940000181189	ENSGT00390000004808.f.b #27	ENSGT00940000155107.a.a.b.b #31	ENSGT00560000078630.b
Cyprininae_a	ANCESTRAL SPECIES	80	ENSGT00730000111283.a.c.b	ENSGT00940000157595.h	ENSGT00940000153845.a.a.c	ENSGT00940000154725.j.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.a	ENSGT00940000154725.j.b.a.a	ENSGT00940000154725.j.a.a.a.a.a.a.b	ENSGT00940000157280.l.b.b	ENSGT00940000156079.c	ENSGT00940000159791.x	ENSGT00390000006486.i.a	ENSGT00950000183031.A.a.a.sd.b	ENSGT00950000183028.a.b.b.h	ENSGT00390000015257.b.a.b #32	ENSGT00950000182941.a.a.b.e.b.b #21	ENSGT00950000183163.a.a.bb.a #22	ENSGT00940000154096.b.b.b.b.a.c #24	ENSGT00510000048364 #26	ENSGT00390000004808.f.a #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a #31	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00560000078630.a.b	ENSGT00950000183008.a.a.a.b.c	ENSGT00940000160424.k	ENSGT00940000158242.j	ENSGT00950000183053.D.j	ENSGT01030000234592.A.a.b.c.a.b.a.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b.a
Golden-line barbel	MODERN SPECIES	693									TRAPPC9 (ENSSGRG00000005537)	ENSSGRG00000005851	rragcb (ENSSGRG00000005854)	fhl3b (ENSSGRG00000005855)	meaf6 (ENSSGRG00000005860) #32	stpg1 (ENSSGRG00000005863)	map7d1b (ENSSGRG00000005866) #21	thrap3b (ENSSGRG00000005870) #22	eva1bb (ENSSGRG00000005877) #24	LSM10 (ENSSGRG00000005878) #26	oscp1a (ENSSGRG00000005880) #27	zc3h12ab (ENSSGRG00000005885) #31	ENSSGRG00000005887	smim13 (ENSSGRG00000005888)	nedd9 (ENSSGRG00000005890)	TMEM170B (ENSSGRG00000005891)	HIVEP1 (ENSSGRG00000005892)	edn1 (ENSSGRG00000005893)	ENSSGRG00000005896	ENSSGRG00000005938	ENSSGRG00000005986	ENSSGRG00000005991	ENSSGRG00000006010
Common carp reference	MODERN SPECIES	31	ST3GAL1 (ENSCCRG00000060275)	ENSCCRG00000014824	ENSCCRG00000068801	KHDRBS3 (ENSCCRG00000039121)	FAM135B (ENSCCRG00000032935)	ENSCCRG00000075899	ENSCCRG00000070761	kcnk9 (ENSCCRG00000006675)	TRAPPC9 (ENSCCRG00000039699)	ENSCCRG00000066644	rragcb (ENSCCRG00000024063)	fhl3b (ENSCCRG00000047959)	meaf6 (ENSCCRG00000031916) #32	stpg1 (ENSCCRG00000031912)	map7d1b (ENSCCRG00000045480) #21	thrap3b (ENSCCRG00000039036) #22	oscp1a (ENSCCRG00000000431) #27	ENSCCRG00000000453	zc3h12ab (ENSCCRG00000043038) #31	ENSCCRG00000073888	smim13 (ENSCCRG00000039594)	nedd9 (ENSCCRG00000043022)	TMEM170B (ENSCCRG00000056870)	HIVEP1 (ENSCCRG00000064435)	edn1 (ENSCCRG00000072509)	ENSCCRG00000005832	ENSCCRG00000079612	ENSCCRG00000062069	ENSCCRG00000066055	ENSCCRG00000058987	ENSCCRG00000065034
Goldfish	MODERN SPECIES	38	meaf6 (ENSCARG00000027707) #32	ENSCARG00000027676	ENSCARG00000027669	ENSCARG00000027653	ENSCARG00000027628	zgc:86598 (ENSCARG00000027280)	FAM135B (ENSCARG00000027192)	ENSCARG00000027155	ENSCARG00000027135	kcnk9 (ENSCARG00000027122)	TRAPPC9 (ENSCARG00000027040)	rragcb (ENSCARG00000026997)	fhl3b (ENSCARG00000026986)	meaf6 (ENSCARG00000026941) #32	map7d1b (ENSCARG00000026890) #21	thrap3b (ENSCARG00000026833) #22	eva1bb (ENSCARG00000066705) #24	LSM10 (ENSCARG00000066701) #26	oscp1a (ENSCARG00000066679) #27	ENSCARG00000066670	zc3h12ab (ENSCARG00000066658) #31	ENSCARG00000066574	smim13 (ENSCARG00000066566)	nedd9 (ENSCARG00000066558)	ENSCARG00000066545	clk2a (ENSCARG00000066066)	si:ch211-81a5.8 (ENSCARG00000066027)	ENSCARG00000066017	ndufv1 (ENSCARG00000065911)	ENSCARG00000065800	ENSCARG00000065788
Cyprininae	ANCESTRAL SPECIES	143	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g	ENSGT00390000015257.b.b #32	ENSGT00390000011598.b	ENSGT00950000182941.a.a.b.e.b.b #21	ENSGT00950000183163.a.a.bb.a #22	ENSGT00940000154096.b.b.b.b.a.c #24	ENSGT00510000048364 #26	ENSGT00390000004808.f.a #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a #31	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00390000015257.a #32	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a #21	ENSGT00950000183163.a.a.bb.b #22	ENSGT00940000154096.b.b.b.b.a.d #24	ENSGT00940000181189	ENSGT00390000004808.f.b #27	ENSGT00940000155107.a.a.b.b #31	ENSGT00560000078630.b	ENSGT00560000078630.a.a.a	ENSGT00950000183008.a.a.a.b.d	ENSGT00940000160424.l	ENSGT00940000158242.i	ENSGT00950000183053.D.i	ENSGT01030000234592.A.a.b.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT00390000004215.a.b.b.c.b.c.a	ENSGT00940000180725
Goldfish	MODERN SPECIES	10	rxrba (ENSCARG00000004767)	col11a2 (ENSCARG00000005224)	ENSCARG00000005471	brd2a (ENSCARG00000005514)	tap2a (ENSCARG00000005599)	ENSCARG00000007227	zdhhc3b (ENSCARG00000007261)	ehmt2 (ENSCARG00000007556)	ENSCARG00000013613	ENSCARG00000013630	meaf6 (ENSCARG00000013724) #32	ENSCARG00000013777	ENSCARG00000013783	stpg1 (ENSCARG00000013790)	map7d1b (ENSCARG00000013800) #21	thrap3b (ENSCARG00000013814) #22	eva1bb (ENSCARG00000013820) #24	LSM10 (ENSCARG00000013829) #26	zc3h12ab (ENSCARG00000013835) #31	ENSCARG00000013843	smim13 (ENSCARG00000013854)	nedd9 (ENSCARG00000013862)	TMEM170B (ENSCARG00000013871)	HIVEP1 (ENSCARG00000013876)	edn1 (ENSCARG00000013880)	ENSCARG00000013901	ENSCARG00000013905	ENSCARG00000013915	ENSCARG00000013920	zgc:86598 (ENSCARG00000013937)	stm (ENSCARG00000013989)
Cyprininae_a	ANCESTRAL SPECIES	43	ENSGT00940000154725.j.a.a.a.a.a.b.b	ENSGT00940000154725.j.b.b	ENSGT00940000157280.l.b.a	ENSGT00940000156079.d	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791.w	ENSGT00390000006486.i.b	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g	ENSGT00390000015257.b.b #32	ENSGT00390000011598.b	ENSGT00390000015257.a #32	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a #21	ENSGT00950000183163.a.a.bb.b #22	ENSGT00940000154096.b.b.b.b.a.d #24	ENSGT00940000181189	ENSGT00390000004808.f.b #27	ENSGT00940000155107.a.a.b.b #31	ENSGT00560000078630.a.a.a	ENSGT00950000183008.a.a.a.b.d	ENSGT00940000160424.l	ENSGT00940000158242.i	ENSGT00950000183053.D.i	ENSGT01030000234592.A.a.b.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT00390000004215.a.b.b.c.b.c.a	ENSGT00940000163549.d	ENSGT00940000161897.b.a.b	ENSGT00390000018422.d
Common carp reference	MODERN SPECIES	12	KHDRBS3 (ENSCCRG00000071461)	FAM135B (ENSCCRG00000067822)	ENSCCRG00000066020	ENSCCRG00000064829	ENSCCRG00000034730	kcnk9 (ENSCCRG00000079282)	TRAPPC9 (ENSCCRG00000022158)	ENSCCRG00000052992	rragcb (ENSCCRG00000018138)	fhl3b (ENSCCRG00000024062)	ENSCCRG00000073470	ENSCCRG00000060628	meaf6 (ENSCCRG00000031868) #32	stpg1 (ENSCCRG00000031856)	map7d1b (ENSCCRG00000038821) #21	thrap3b (ENSCCRG00000038825) #22	eva1bb (ENSCCRG00000038827) #24	oscp1a (ENSCCRG00000022844) #27	zc3h12ab (ENSCCRG00000081392) #31	smim13 (ENSCCRG00000074273)	nedd9 (ENSCCRG00000022862)	TMEM170B (ENSCCRG00000005805)	HIVEP1 (ENSCCRG00000005836)	edn1 (ENSCCRG00000005841)	ENSCCRG00000058333	ENSCCRG00000070436	ENSCCRG00000044535	si:ch211-133n4.6 (ENSCCRG00000059589)	stm (ENSCCRG00000049053)	si:ch211-80h18.1 (ENSCCRG00000003110)	hsf1 (ENSCCRG00000013317)
Golden-line barbel	MODERN SPECIES	431								ENSSGRG00000044341	kcnk9 (ENSSGRG00000044345)	TRAPPC9 (ENSSGRG00000044348)	rragcb (ENSSGRG00000044382)	fhl3b (ENSSGRG00000044387)	ENSSGRG00000044389	stpg1 (ENSSGRG00000044390)	map7d1b (ENSSGRG00000044391) #21	thrap3b (ENSSGRG00000044395) #22	eva1bb (ENSSGRG00000044399) #24	oscp1a (ENSSGRG00000044401) #27	ENSSGRG00000044403	zc3h12ab (ENSSGRG00000044406) #31	smim13 (ENSSGRG00000044408)	nedd9 (ENSSGRG00000044409)	HIVEP1 (ENSSGRG00000044413)	edn1 (ENSSGRG00000044414)	ENSSGRG00000044415	ENSSGRG00000044416
Zebrafish	MODERN SPECIES	10	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315)	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216) #32	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) #21	ENSDARG00000101490 #21	ENSDARG00000103395 #21	ENSDARG00000102533 #21	ENSDARG00000089402 #21	thrap3b (ENSDARG00000098228) #22	eva1bb (ENSDARG00000100698) #24	LSM10 (ENSDARG00000101222) #26	oscp1a (ENSDARG00000104403) #27	zc3h12ab (ENSDARG00000101034) #31	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)	ENSDARG00000100539	ENSDARG00000112881	smim13 (ENSDARG00000089204)	nedd9 (ENSDARG00000089878)	TMEM170B (ENSDARG00000071205)
Euteleosteomorpha	ANCESTRAL SPECIES	12	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b	ENSGT00940000160519.a.b	ENSGT00940000154450.tc	ENSGT01090000260070.C.b	ENSGT00390000017974.ob	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Acanthomorphata	ANCESTRAL SPECIES	70	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Euacanthomorphacea	ANCESTRAL SPECIES	24	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Climbing perch	MODERN SPECIES	2	ago4 (ENSATEG00000006717) #14	CLSPN (ENSATEG00000006697) #12	ENSATEG00000006685	ENSATEG00000006679	psmb2 (ENSATEG00000006643) #10	TFAP2E (ENSATEG00000006627) #9	NCDN (ENSATEG00000006619) #8	KIAA0319L (ENSATEG00000006607) #7	ENSATEG00000006592	ppt1 (ENSATEG00000028900)	rragcb (ENSATEG00000006525)	fhl3b (ENSATEG00000006513)	meaf6 (ENSATEG00000006466) #32	stpg1 (ENSATEG00000006457)	map7d1b (ENSATEG00000006432) #21	thrap3b (ENSATEG00000006350) #22	eva1bb (ENSATEG00000006328) #24	LSM10 (ENSATEG00000006310) #26	oscp1a (ENSATEG00000006263) #27	ENSATEG00000006247	zc3h12ab (ENSATEG00000006140) #31	smim13 (ENSATEG00000006130)	nedd9 (ENSATEG00000006076)	TMEM170B (ENSATEG00000028130)	HIVEP1 (ENSATEG00000005949)	edn1 (ENSATEG00000026028)	si:dkeyp-92c9.2 (ENSATEG00000005914)	myo1g (ENSATEG00000005817)	si:ch211-195b13.1 (ENSATEG00000028776)	eya3 (ENSATEG00000005730)	ENSATEG00000005722
Siamese fighting fish	MODERN SPECIES	2	ago4 (ENSBSLG00000019879) #14	CLSPN (ENSBSLG00000020294) #12	ENSBSLG00000020312	cdca5 (ENSBSLG00000020313)	psmb2 (ENSBSLG00000020317) #10	tfap2e (ENSBSLG00000020341) #9	NCDN (ENSBSLG00000020347) #8	KIAA0319L (ENSBSLG00000021191) #7	cap1 (ENSBSLG00000021643)	ppt1 (ENSBSLG00000021676)	rragcb (ENSBSLG00000021829)	fhl3b (ENSBSLG00000021855)	meaf6 (ENSBSLG00000021881) #32	stpg1 (ENSBSLG00000021909)	map7d1b (ENSBSLG00000021935) #21	thrap3b (ENSBSLG00000021994) #22	eva1bb (ENSBSLG00000022015) #24	LSM10 (ENSBSLG00000022026) #26	oscp1a (ENSBSLG00000022029) #27	ENSBSLG00000022042	ENSBSLG00000022051 #31	smim13 (ENSBSLG00000022059)	nedd9 (ENSBSLG00000022070)	TMEM170B (ENSBSLG00000022084)	HIVEP1 (ENSBSLG00000022092)	edn1 (ENSBSLG00000022107)	si:dkeyp-92c9.2 (ENSBSLG00000022111)	myo1g (ENSBSLG00000022131)	si:ch211-195b13.1 (ENSBSLG00000022497)	eya3 (ENSBSLG00000023364)	ENSBSLG00000023444
Zig-zag eel	MODERN SPECIES	2	ago4 (ENSMAMG00000003874) #14	CLSPN (ENSMAMG00000003927) #12	ENSMAMG00000003980	ENSMAMG00000003988	psmb2 (ENSMAMG00000003992) #10	TFAP2E (ENSMAMG00000004022) #9	NCDN (ENSMAMG00000004058) #8	KIAA0319L (ENSMAMG00000004065) #7	ENSMAMG00000004094	ppt1 (ENSMAMG00000004148)	rragcb (ENSMAMG00000004171)	fhl3b (ENSMAMG00000004199)	meaf6 (ENSMAMG00000004214) #32	stpg1 (ENSMAMG00000004237)	map7d1b (ENSMAMG00000004292) #21	thrap3b (ENSMAMG00000004348) #22	eva1bb (ENSMAMG00000025345) #24	ENSMAMG00000028468	oscp1a (ENSMAMG00000004443) #27	ENSMAMG00000027271	ENSMAMG00000004529	zc3h12ab (ENSMAMG00000004483) #31	smim13 (ENSMAMG00000028528)	nedd9 (ENSMAMG00000004548)	TMEM170B (ENSMAMG00000024794)	HIVEP1 (ENSMAMG00000004590)	edn1 (ENSMAMG00000004638)	si:dkeyp-92c9.2 (ENSMAMG00000027420)	myo1g (ENSMAMG00000004681)	si:ch211-195b13.1 (ENSMAMG00000004750)	ENSMAMG00000004793
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Pleuronectoidei	ANCESTRAL SPECIES	33	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Turbot	MODERN SPECIES	14	ENSSMAG00000000785	ago4 (ENSSMAG00000000808) #14	CLSPN (ENSSMAG00000000941) #12	ENSSMAG00000000955	ENSSMAG00000037330	TFAP2E (ENSSMAG00000000991) #9	NCDN (ENSSMAG00000001017) #8	KIAA0319L (ENSSMAG00000001024) #7	ENSSMAG00000001063	ppt1 (ENSSMAG00000001080)	rragcb (ENSSMAG00000001115)	fhl3b (ENSSMAG00000001140)	meaf6 (ENSSMAG00000001163) #32	stpg1 (ENSSMAG00000035705)	map7d1b (ENSSMAG00000001191) #21	thrap3b (ENSSMAG00000001259) #22	eva1bb (ENSSMAG00000001280) #24	LSM10 (ENSSMAG00000001297) #26	oscp1a (ENSSMAG00000001314) #27	ENSSMAG00000021680	zc3h12ab (ENSSMAG00000001367) #31	smim13 (ENSSMAG00000030110)	nedd9 (ENSSMAG00000001395)	TMEM170B (ENSSMAG00000030357)	HIVEP1 (ENSSMAG00000001439)	edn1 (ENSSMAG00000001461)	si:dkeyp-92c9.2 (ENSSMAG00000001471)	myo1g (ENSSMAG00000001483)	si:ch211-195b13.1 (ENSSMAG00000001608)	eya3 (ENSSMAG00000001662)	ENSSMAG00000001691
Tongue sole	MODERN SPECIES	9	ago4 (ENSCSEG00000010696) #14	CLSPN (ENSCSEG00000010681) #12	ENSCSEG00000010661	cdca5 (ENSCSEG00000010655)	psmb2 (ENSCSEG00000010643) #10	tfap2e (ENSCSEG00000010632) #9	NCDN (ENSCSEG00000010623) #8	ENSCSEG00000010571 #7	cap1 (ENSCSEG00000010543)	ppt1 (ENSCSEG00000010527)	rragcb (ENSCSEG00000010508)	fhl3b (ENSCSEG00000010500)	meaf6 (ENSCSEG00000010482) #32	stpg1 (ENSCSEG00000010471)	map7d1b (ENSCSEG00000010416) #21	thrap3b (ENSCSEG00000010392) #22	eva1bb (ENSCSEG00000010382) #24	LSM10 (ENSCSEG00000010374) #26	oscp1a (ENSCSEG00000010362) #27	zc3h12ab (ENSCSEG00000010348) #31	smim13 (ENSCSEG00000010342)	nedd9 (ENSCSEG00000010325)	TMEM170B (ENSCSEG00000010318)	HIVEP1 (ENSCSEG00000010301)	edn1 (ENSCSEG00000010290)	si:dkeyp-92c9.2 (ENSCSEG00000010283)	myo1g (ENSCSEG00000010242)	si:ch211-195b13.1 (ENSCSEG00000010202)	eya3 (ENSCSEG00000010177)	ENSCSEG00000010138	ENSCSEG00000010127
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Seriola	ANCESTRAL SPECIES	42													ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Greater amberjack	MODERN SPECIES	94													meaf6 (ENSSDUG00000006968) #32	stpg1 (ENSSDUG00000006981)	map7d1b (ENSSDUG00000007025) #21	thrap3b (ENSSDUG00000007054) #22	eva1bb (ENSSDUG00000007086) #24	LSM10 (ENSSDUG00000007090) #26	oscp1a (ENSSDUG00000007103) #27	ENSSDUG00000007130	ENSSDUG00000007152	zc3h12ab (ENSSDUG00000007162) #31	smim13 (ENSSDUG00000007168)	nedd9 (ENSSDUG00000007176)	TMEM170B (ENSSDUG00000007203)	HIVEP1 (ENSSDUG00000007210)	edn1 (ENSSDUG00000007218)	si:dkeyp-92c9.2 (ENSSDUG00000007223)	myo1g (ENSSDUG00000007234)	si:ch211-195b13.1 (ENSSDUG00000007289)	eya3 (ENSSDUG00000007316)
Yellowtail amberjack	MODERN SPECIES	2850											ENSSLDG00000009021	meaf6 (ENSSLDG00000009035) #32	stpg1 (ENSSLDG00000009059)	map7d1b (ENSSLDG00000009085) #21	ENSSLDG00000009184	thrap3b (ENSSLDG00000009210) #22	eva1bb (ENSSLDG00000009233) #24	oscp1a (ENSSLDG00000009259) #27	ENSSLDG00000009301	zc3h12ab (ENSSLDG00000009317) #31	smim13 (ENSSLDG00000009331)	nedd9 (ENSSLDG00000009345)	TMEM170B (ENSSLDG00000009358)	HIVEP1 (ENSSLDG00000009376)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Tetraodontidae	ANCESTRAL SPECIES	43	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b.e	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e
Fugu	MODERN SPECIES	3	ENSTRUG00000007934	ago4 (ENSTRUG00000008052) #14	CLSPN (ENSTRUG00000008616) #12	ENSTRUG00000019824	cdca5 (ENSTRUG00000008868)	psmb2 (ENSTRUG00000008871) #10	tfap2e (ENSTRUG00000008956) #9	NCDN (ENSTRUG00000009054) #8	KIAA0319L (ENSTRUG00000009252) #7	cap1 (ENSTRUG00000009345)	ppt1 (ENSTRUG00000009602)	rragcb (ENSTRUG00000009884)	fhl3b (ENSTRUG00000010010)	meaf6 (ENSTRUG00000010159) #32	map7d1b (ENSTRUG00000010226) #21	thrap3b (ENSTRUG00000010336) #22	eva1bb (ENSTRUG00000010516) #24	LSM10 (ENSTRUG00000010531) #26	ENSTRUG00000025207	ENSTRUG00000010565 #31	smim13 (ENSTRUG00000020110)	smim13 (ENSTRUG00000025620)	nedd9 (ENSTRUG00000010644)	TMEM170B (ENSTRUG00000024077)	HIVEP1 (ENSTRUG00000010871)	edn1 (ENSTRUG00000024552)	si:dkeyp-92c9.2 (ENSTRUG00000011007)	myo1g (ENSTRUG00000011023)	si:ch211-195b13.1 (ENSTRUG00000011468)	eya3 (ENSTRUG00000011700)	ENSTRUG00000011802
Tetraodon	MODERN SPECIES	16	ENSTNIG00000017736	cdca8 (ENSTNIG00000001048)	ENSTNIG00000006333	ENSTNIG00000006332	ago4 (ENSTNIG00000006331) #14	CLSPN (ENSTNIG00000006330) #12	ENSTNIG00000004591	NCDN (ENSTNIG00000004590) #8	KIAA0319L (ENSTNIG00000004589) #7	cap1 (ENSTNIG00000004588)	ppt1 (ENSTNIG00000004587)	rragcb (ENSTNIG00000004586)	fhl3b (ENSTNIG00000004585)	meaf6 (ENSTNIG00000004584) #32	map7d1b (ENSTNIG00000004583) #21	thrap3b (ENSTNIG00000004582) #22	eva1bb (ENSTNIG00000004581) #24	oscp1a (ENSTNIG00000019817) #27	zc3h12ab (ENSTNIG00000001274) #31	msto1 (ENSTNIG00000005572)	srsf4 (ENSTNIG00000005573)	xkr8.3 (ENSTNIG00000005574)	eya3 (ENSTNIG00000000209)	si:ch211-195b13.1 (ENSTNIG00000005575)	ENSTNIG00000005576	srsf4 (ENSTNIG00000000115)	xkr8.3 (ENSTNIG00000003808)	eya3 (ENSTNIG00000008190)	si:ch211-195b13.1 (ENSTNIG00000002279)	myo1g (ENSTNIG00000004555)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00390000011115	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Gilthead seabream	MODERN SPECIES	17	c19h1orf109 (ENSSAUG00010010428) #37	ago4 (ENSSAUG00010008440) #14	CLSPN (ENSSAUG00010008404) #12	ENSSAUG00010008403	cdca5 (ENSSAUG00010008401)	psmb2 (ENSSAUG00010008400) #10	tfap2e (ENSSAUG00010008399) #9	NCDN (ENSSAUG00010008396) #8	KIAA0319L (ENSSAUG00010005044) #7	cap1 (ENSSAUG00010004535)	rragcb (ENSSAUG00010004527)	fhl3b (ENSSAUG00010004524)	ppt1 (ENSSAUG00010004438)	stpg1 (ENSSAUG00010004417)	map7d1b (ENSSAUG00010004404) #21	thrap3b (ENSSAUG00010004395) #22	eva1bb (ENSSAUG00010004385) #24	LSM10 (ENSSAUG00010004379) #26	ENSSAUG00010004375	oscp1a (ENSSAUG00010004367) #27	zc3h12ab (ENSSAUG00010004363) #31	smim13 (ENSSAUG00010004360)	nedd9 (ENSSAUG00010004355)	TMEM170B (ENSSAUG00010004349)	HIVEP1 (ENSSAUG00010004340)	edn1 (ENSSAUG00010004330)	si:dkeyp-92c9.2 (ENSSAUG00010004322)	myo1g (ENSSAUG00010003283)	si:ch211-195b13.1 (ENSSAUG00010027518)	eya3 (ENSSAUG00010027490)	ENSSAUG00010027488
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
European seabass	MODERN SPECIES	22	ENSDLAG00005013457	AGO4 (ENSDLAG00005013573) #14	CLSPN (ENSDLAG00005016583) #12	beta 2 (ENSDLAG00005034806) #10	ENSDLAG00005016605	tfap2e (ENSDLAG00005016618) #9	NCDN (ENSDLAG00005016625) #8	KIAA0319L (ENSDLAG00005016664) #7	ENSDLAG00005017641	ppt1 (ENSDLAG00005032737)	rragcb (ENSDLAG00005018704)	fhl3b (ENSDLAG00005018713)	meaf6 (ENSDLAG00005018732) #32	stpg1 (ENSDLAG00005026697)	map7d1b (ENSDLAG00005018751) #21	thrap3b (ENSDLAG00005018774) #22	eva1bb (ENSDLAG00005002280) #24	LSM10 (ENSDLAG00005002297) #26	oscp1a (ENSDLAG00005002331) #27	ENSDLAG00005035131	zc3h12ab (ENSDLAG00005002900) #31	smim13 (ENSDLAG00005002917)	nedd9 (ENSDLAG00005002936)	TMEM170B (ENSDLAG00005030210)	HIVEP1 (ENSDLAG00005002969)	edn1 (ENSDLAG00005002998)	si:dkeyp-92c9.2 (ENSDLAG00005030433)	myo1g (ENSDLAG00005003113)	si:ch211-195b13.1 (ENSDLAG00005033105)	eya3 (ENSDLAG00005005939)	ENSDLAG00005032813
Large yellow croaker	MODERN SPECIES	484	CLSPN (ENSLCRG00005004867) #12	ENSLCRG00005004866	cdca5 (ENSLCRG00005004865)	psmb2 (ENSLCRG00005004853) #10	tfap2e (ENSLCRG00005004851) #9	NCDN (ENSLCRG00005004849) #8	ENSLCRG00005004848 #7	KIAA0319L (ENSLCRG00005002018) #7	cap1 (ENSLCRG00005001693)	ppt1 (ENSLCRG00005000758)	rragcb (ENSLCRG00005000695)	fhl3b (ENSLCRG00005000684)	meaf6 (ENSLCRG00005000657) #32	stpg1 (ENSLCRG00005000640)	map7d1b (ENSLCRG00005020478) #21	thrap3b (ENSLCRG00005020473) #22	eva1bb (ENSLCRG00005020472) #24	LSM10 (ENSLCRG00005020471) #26	oscp1a (ENSLCRG00005020381) #27	ENSLCRG00005020362	zc3h12ab (ENSLCRG00005020357) #31	smim13 (ENSLCRG00005020351)	nedd9 (ENSLCRG00005020348)	pip5k1aa (ENSLCRG00005020307)	psmd4a (ENSLCRG00005020248)	znf687b (ENSLCRG00005020231)	aqp10b (ENSLCRG00005020225)	hax1 (ENSLCRG00005020218)	ubap2l (ENSLCRG00005020158)	C1orf43 (ENSLCRG00005020121)	ENSLCRG00005020116
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Channel bull blenny	MODERN SPECIES	2	ago4 (ENSCGOG00000005647) #14	CLSPN (ENSCGOG00000008234) #12	ENSCGOG00000008245	cdca5 (ENSCGOG00000008246)	psmb2 (ENSCGOG00000008253) #10	tfap2e (ENSCGOG00000008293) #9	NCDN (ENSCGOG00000008308) #8	KIAA0319L (ENSCGOG00000008351) #7	cap1 (ENSCGOG00000009184)	ppt1 (ENSCGOG00000009478)	rragcb (ENSCGOG00000009623)	fhl3b (ENSCGOG00000009706)	meaf6 (ENSCGOG00000009716) #32	stpg1 (ENSCGOG00000009789)	map7d1b (ENSCGOG00000009797) #21	thrap3b (ENSCGOG00000009838) #22	eva1bb (ENSCGOG00000009852) #24	LSM10 (ENSCGOG00000009858) #26	oscp1a (ENSCGOG00000009863) #27	ENSCGOG00000009889	zc3h12ab (ENSCGOG00000009896) #31	smim13 (ENSCGOG00000009899)	nedd9 (ENSCGOG00000009901)	TMEM170B (ENSCGOG00000009902)	ENSCGOG00000009908	ENSCGOG00000009927	ENSCGOG00000009931	ENSCGOG00000009936	ENSCGOG00000009965	ENSCGOG00000009966	ENSCGOG00000009970
Pike perch	MODERN SPECIES	13	ago4 (ENSSLUG00000006092) #14	CLSPN (ENSSLUG00000005829) #12	ENSSLUG00000005827	cdca5 (ENSSLUG00000005818)	psmb2 (ENSSLUG00000005805) #10	tfap2e (ENSSLUG00000005788) #9	NCDN (ENSSLUG00000005782) #8	KIAA0319L (ENSSLUG00000004935) #7	cap1 (ENSSLUG00000004853)	ppt1 (ENSSLUG00000004585)	rragcb (ENSSLUG00000004552)	fhl3b (ENSSLUG00000004540)	meaf6 (ENSSLUG00000004526) #32	stpg1 (ENSSLUG00000004518)	map7d1b (ENSSLUG00000004454) #21	thrap3b (ENSSLUG00000004422) #22	eva1bb (ENSSLUG00000004412) #24	LSM10 (ENSSLUG00000004403) #26	oscp1a (ENSSLUG00000004327) #27	ENSSLUG00000004314	ENSSLUG00000004309	ENSSLUG00000004301	zc3h12ab (ENSSLUG00000004297) #31	smim13 (ENSSLUG00000004292)	nedd9 (ENSSLUG00000004286)	TMEM170B (ENSSLUG00000004281)	HIVEP1 (ENSSLUG00000004271)	edn1 (ENSSLUG00000004261)	si:dkeyp-92c9.2 (ENSSLUG00000004255)	myo1g (ENSSLUG00000004127)	si:ch211-195b13.1 (ENSSLUG00000002579)
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e
Lumpfish	MODERN SPECIES	2	ago4 (ENSCLMG00005022462) #14	CLSPN (ENSCLMG00005022434) #12	ENSCLMG00005022430	cdca5 (ENSCLMG00005022429)	psmb2 (ENSCLMG00005022422) #10	tfap2e (ENSCLMG00005022419) #9	NCDN (ENSCLMG00005022416) #8	KIAA0319L (ENSCLMG00005022250) #7	cap1 (ENSCLMG00005022185)	ppt1 (ENSCLMG00005022130)	rragcb (ENSCLMG00005022126)	fhl3b (ENSCLMG00005022125)	meaf6 (ENSCLMG00005022124) #32	stpg1 (ENSCLMG00005022122)	map7d1b (ENSCLMG00005022121) #21	thrap3b (ENSCLMG00005022119) #22	eva1bb (ENSCLMG00005022118) #24	LSM10 (ENSCLMG00005022117) #26	oscp1a (ENSCLMG00005022114) #27	zc3h12ab (ENSCLMG00005022113) #31	smim13 (ENSCLMG00005022112)	nedd9 (ENSCLMG00005022110)	TMEM170B (ENSCLMG00005022109)	HIVEP1 (ENSCLMG00005022108)	ENSCLMG00005022107	ENSCLMG00005022106	edn1 (ENSCLMG00005022105)	si:dkeyp-92c9.2 (ENSCLMG00005022104)	myo1g (ENSCLMG00005021011)	si:ch211-195b13.1 (ENSCLMG00005020929)	eya3 (ENSCLMG00005020894)
Stickleback	MODERN SPECIES	9	ENSGACG00000002224	gja9b (ENSGACG00000002230)	srsf10b (ENSGACG00000002231)	ENSGACG00000002234	slc9a1b (ENSGACG00000002247)	ENSGACG00000002253	KDM1B (ENSGACG00000002257)	tekt1 (ENSGACG00000002270) ##17	DPY19L4 (ENSGACG00000002271)	ENSGACG00000002285	ENSGACG00000002289	ints8 (ENSGACG00000002293)	CCNE2 (ENSGACG00000002312)	ENSGACG00000002315	gdf6b (ENSGACG00000002318)	thrap3b (ENSGACG00000002319) #22	eva1bb (ENSGACG00000002327) #24	LSM10 (ENSGACG00000002329) #26	oscp1a (ENSGACG00000002331) #27	ENSGACG00000002336	zc3h12ab (ENSGACG00000002341) #31	nedd9 (ENSGACG00000002344)	TMEM170B (ENSGACG00000002349)	HIVEP1 (ENSGACG00000002352)	si:dkeyp-92c9.2 (ENSGACG00000002355)	myo1g (ENSGACG00000002357)	ENSGACG00000002361	si:ch211-195b13.1 (ENSGACG00000002364)	eya3 (ENSGACG00000002372)	ENSGACG00000002382	xkr8.3 (ENSGACG00000002383)
Ballan wrasse	MODERN SPECIES	178									cap1 (ENSLBEG00000018203)	ppt1 (ENSLBEG00000018087)	rragcb (ENSLBEG00000018067)	fhl3b (ENSLBEG00000018044)	meaf6 (ENSLBEG00000018002) #32	stpg1 (ENSLBEG00000017959)	map7d1b (ENSLBEG00000017860) #21	thrap3b (ENSLBEG00000017803) #22	eva1bb (ENSLBEG00000017790) #24	LSM10 (ENSLBEG00000017764) #26	ENSLBEG00000017744	oscp1a (ENSLBEG00000017707) #27	ENSLBEG00000017687	ENSLBEG00000017654	zc3h12ab (ENSLBEG00000017593) #31	smim13 (ENSLBEG00000017560)	nedd9 (ENSLBEG00000017548)	TMEM170B (ENSLBEG00000017533)	HIVEP1 (ENSLBEG00000017512)	edn1 (ENSLBEG00000017479)	si:dkeyp-92c9.2 (ENSLBEG00000017467)	myo1g (ENSLBEG00000017408)	si:ch211-195b13.1 (ENSLBEG00000017306)
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Atherinomorphae	ANCESTRAL SPECIES	52	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067	ENSGT00530000063023.A.b
Aplocheiloidei	ANCESTRAL SPECIES	129	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27
Mangrove rivulus	MODERN SPECIES	511															ENSKMAG00000012078	thrap3b (ENSKMAG00000012105) #22	eva1bb (ENSKMAG00000012127) #24	LSM10 (ENSKMAG00000012143) #26	ENSKMAG00000012154	oscp1a (ENSKMAG00000012172) #27
Turquoise killifish	MODERN SPECIES	411											cap1 (ENSNFUG00015020221)	ppt1 (ENSNFUG00015020397)	ENSNFUG00015020420	MEAF6 (ENSNFUG00015020423) #32	map7d1b (ENSNFUG00015020435) #21	thrap3b (ENSNFUG00015020457) #22
Cyprinodontoidei	ANCESTRAL SPECIES	60	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B
NAME_4	ANCESTRAL SPECIES	178	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729.n #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Sheepshead minnow	MODERN SPECIES	1391															ENSCVAG00000001553	thrap3b (ENSCVAG00000001547) #22	eva1bb (ENSCVAG00000001541) #24	LSM10 (ENSCVAG00000001536) #26	oscp1a (ENSCVAG00000001534) #27	ENSCVAG00000001517	zc3h12ab (ENSCVAG00000001516) #31	smim13 (ENSCVAG00000001513)	si:ch211-195b13.1 (ENSCVAG00000001510)	eya3 (ENSCVAG00000001500)
Mummichog	MODERN SPECIES	1085														meaf6 (ENSFHEG00000001037) #32	map7d1b (ENSFHEG00000001044) #21	thrap3b (ENSFHEG00000001051) #22	ENSFHEG00000001054	LSM10 (ENSFHEG00000001058) #26	oscp1a (ENSFHEG00000001061) #27	ENSFHEG00000001064
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT00940000155107.a.a.b #31	ENSGT01090000260093.b.f.o	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067	ENSGT00530000063023.A.b
Poecilia	ANCESTRAL SPECIES	73	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000170176	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT01090000260093.b.f.o	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00530000064067	ENSGT00530000063023.A.b	ENSGT00390000007597
NAME_6	ANCESTRAL SPECIES	199	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000170176	ENSGT00950000182978.B	ENSGT00940000164496.a.a
Sailfin molly	MODERN SPECIES	1900																thrap3b (ENSPLAG00000016521) #22	eva1bb (ENSPLAG00000016531) #24	LSM10 (ENSPLAG00000016537) #26	oscp1a (ENSPLAG00000016596) #27	ENSPLAG00000016619	ENSPLAG00000016657	eya3 (ENSPLAG00000016687)	si:ch211-195b13.1 (ENSPLAG00000016719)	ENSPLAG00000016740	mgat4b (ENSPLAG00000016768)
Amazon molly	MODERN SPECIES	658	ENSPFOG00000002334	ago4 (ENSPFOG00000001935) #14	CLSPN (ENSPFOG00000001788) #12	ENSPFOG00000024371	cdca5 (ENSPFOG00000001777)	psmb2 (ENSPFOG00000001718) #10	tfap2e (ENSPFOG00000001600) #9	NCDN (ENSPFOG00000001489) #8	KIAA0319L (ENSPFOG00000001224) #7	cap1 (ENSPFOG00000001012)	ppt1 (ENSPFOG00000000883)	rragcb (ENSPFOG00000000814)	fhl3b (ENSPFOG00000000748)	meaf6 (ENSPFOG00000000680) #32	map7d1b (ENSPFOG00000000581) #21	thrap3b (ENSPFOG00000000525) #22	eva1bb (ENSPFOG00000000508) #24	LSM10 (ENSPFOG00000020490) #26	oscp1a (ENSPFOG00000000446) #27	ENSPFOG00000020489	ENSPFOG00000000423	eya3 (ENSPFOG00000000356)	si:ch211-195b13.1 (ENSPFOG00000000288)
Guppy	MODERN SPECIES	441	ENSPREG00000010398	ENSPREG00000010386	ago4 (ENSPREG00000010315) #14	CLSPN (ENSPREG00000010244) #12	ENSPREG00000010216	cdca5 (ENSPREG00000010215)	psmb2 (ENSPREG00000010199) #10	tfap2e (ENSPREG00000010182) #9	NCDN (ENSPREG00000010167) #8	KIAA0319L (ENSPREG00000010131) #7	cap1 (ENSPREG00000010113)	ppt1 (ENSPREG00000010053)	rragcb (ENSPREG00000010016)	fhl3b (ENSPREG00000010000)	meaf6 (ENSPREG00000009968) #32	thrap3b (ENSPREG00000009927) #22	ENSPREG00000009908	LSM10 (ENSPREG00000009899) #26	oscp1a (ENSPREG00000009882) #27	ENSPREG00000009875	ENSPREG00000009866	eya3 (ENSPREG00000009854)	smim13 (ENSPREG00000009828)	ENSPREG00000009817	XKR8 (ENSPREG00000009810)	si:ch211-195b13.1 (ENSPREG00000009750)	xkr8.3 (ENSPREG00000009727)	srsf4 (ENSPREG00000009639)	msto1 (ENSPREG00000009596)	ENSPREG00000009564	ints8 (ENSPREG00000009537)
Platyfish	MODERN SPECIES	4	ENSXMAG00000027954	ago4 (ENSXMAG00000016657) #14	CLSPN (ENSXMAG00000016634) #12	ENSXMAG00000021351	cdca5 (ENSXMAG00000022429)	psmb2 (ENSXMAG00000016616) #10	tfap2e (ENSXMAG00000003446) #9	NCDN (ENSXMAG00000027698) #8	KIAA0319L (ENSXMAG00000003454) #7	cap1 (ENSXMAG00000028529)	ppt1 (ENSXMAG00000003488)	rragcb (ENSXMAG00000013223)	fhl3b (ENSXMAG00000003516)	meaf6 (ENSXMAG00000003525) #32	map7d1b (ENSXMAG00000003534) #21	thrap3b (ENSXMAG00000017962) #22	eva1bb (ENSXMAG00000017970) #24	LSM10 (ENSXMAG00000019963) #26	ENSXMAG00000004775 #27	ENSXMAG00000028561 #27	ENSXMAG00000028082	ENSXMAG00000017971	eya3 (ENSXMAG00000017972)	si:ch211-195b13.1 (ENSXMAG00000017993)	smim13 (ENSXMAG00000019893)	zc3h12ab (ENSXMAG00000025043) #31	ENSXMAG00000029667	XKR8 (ENSXMAG00000021722)	xkr8.3 (ENSXMAG00000005543)	ENSXMAG00000021549	srsf4 (ENSXMAG00000005545)
Oryzias	ANCESTRAL SPECIES	23	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439.a	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00940000177439.a	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053	ENSGT00390000008812.b.a
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000015107	cdca8 (ENSOJAG00000015123)	c19h1orf109 (ENSOJAG00000015238) #37	ENSOJAG00000015245	EIF2C4 (ENSOJAG00000015300) #14	ENSOJAG00000017111	psmb2 (ENSOJAG00000017149) #10	tfap2e (ENSOJAG00000017207) #9	KIAA0319L (ENSOJAG00000017300) #7	cap1 (ENSOJAG00000018135)	ENSOJAG00000018375	rragcb (ENSOJAG00000018406)	fhl3b (ENSOJAG00000018420)	meaf6 (ENSOJAG00000018430) #32	map7d1b (ENSOJAG00000018478) #21	thrap3b (ENSOJAG00000018559) #22	eva1bb (ENSOJAG00000018573) #24	LSM10 (ENSOJAG00000018606) #26	oscp1a (ENSOJAG00000018623) #27	ENSOJAG00000001622	ENSOJAG00000001634	zc3h12ab (ENSOJAG00000001643) #31	smim13 (ENSOJAG00000001654)	msto1 (ENSOJAG00000001662)	srsf4 (ENSOJAG00000001676)	ENSOJAG00000001693	xkr8.3 (ENSOJAG00000001703)	ENSOJAG00000001723	eya3 (ENSOJAG00000001877)	si:ch211-195b13.1 (ENSOJAG00000002602)	myo1g (ENSOJAG00000002719)
Indian medaka	MODERN SPECIES	3	ago4 (ENSOMEG00000006399) #14	CLSPN (ENSOMEG00000006343) #12	ENSOMEG00000006270	cdca5 (ENSOMEG00000006255)	psmb2 (ENSOMEG00000006246) #10	ENSOMEG00000006212	tfap2e (ENSOMEG00000000143) #9	NCDN (ENSOMEG00000006095) #8	KIAA0319L (ENSOMEG00000006068) #7	cap1 (ENSOMEG00000006049)	ppt1 (ENSOMEG00000006005)	rragcb (ENSOMEG00000000957)	fhl3b (ENSOMEG00000005944)	meaf6 (ENSOMEG00000005907) #32	map7d1b (ENSOMEG00000005865) #21	thrap3b (ENSOMEG00000005716) #22	eva1bb (ENSOMEG00000005691) #24	ENSOMEG00000005680	oscp1a (ENSOMEG00000005663) #27	ENSOMEG00000005633	ENSOMEG00000005619	ENSOMEG00000005607	zc3h12ab (ENSOMEG00000005602) #31	smim13 (ENSOMEG00000000693)	msto1 (ENSOMEG00000005580)	srsf4 (ENSOMEG00000005541)	xkr8.3 (ENSOMEG00000005514)	ENSOMEG00000005502	eya3 (ENSOMEG00000005472)	si:ch211-195b13.1 (ENSOMEG00000022573)	ENSOMEG00000022516
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053
Chinese medaka	MODERN SPECIES	659	c19h1orf109 (ENSOSIG00000022768) #37	ago4 (ENSOSIG00000022728) #14	ENSOSIG00000022714 #12	ENSOSIG00000022710	ENSOSIG00000022708	psmb2 (ENSOSIG00000022707) #10	tfap2e (ENSOSIG00000022704) #9	NCDN (ENSOSIG00000022696) #8	KIAA0319L (ENSOSIG00000022341) #7	cap1 (ENSOSIG00000022267)	ppt1 (ENSOSIG00000021993)	rragcb (ENSOSIG00000021848)	fhl3b (ENSOSIG00000021818)	meaf6 (ENSOSIG00000021815) #32	ENSOSIG00000021805	thrap3b (ENSOSIG00000021772) #22	eva1bb (ENSOSIG00000021751) #24	LSM10 (ENSOSIG00000021747) #26	oscp1a (ENSOSIG00000021743) #27	ENSOSIG00000021733	ENSOSIG00000021725	ENSOSIG00000021721	zc3h12ab (ENSOSIG00000021718) #31	smim13 (ENSOSIG00000021709)	msto1 (ENSOSIG00000021707)	ENSOSIG00000021699	ENSOSIG00000021696	ENSOSIG00000021694	eya3 (ENSOSIG00000021665)	myo1g (ENSOSIG00000019767)	si:dkeyp-92c9.2 (ENSOSIG00000019691)
Japanese Medaka HdrR	MODERN SPECIES	2	c19h1orf109 (ENSORLG00000009883) #37	ENSORLG00000009875	ago4 (ENSORLG00000009865) #14	CLSPN (ENSORLG00000009781) #12	ENSORLG00000027383	cdca5 (ENSORLG00000009754)	psmb2 (ENSORLG00000009748) #10	tfap2e (ENSORLG00000022744) #9	NCDN (ENSORLG00000009735) #8	KIAA0319L (ENSORLG00000009728) #7	cap1 (ENSORLG00000009709)	ppt1 (ENSORLG00000009676)	rragcb (ENSORLG00000009645)	meaf6 (ENSORLG00000021858) #32	map7d1b (ENSORLG00000009561) #21	thrap3b (ENSORLG00000009543) #22	eva1bb (ENSORLG00000009511) #24	LSM10 (ENSORLG00000009504) #26	ENSORLG00000028326	oscp1a (ENSORLG00000009500) #27	ENSORLG00000028537	ENSORLG00000027497	ENSORLG00000009473 #31	smim13 (ENSORLG00000023911)	msto1 (ENSORLG00000009462)	ENSORLG00000009430	ENSORLG00000028783	xkr8.3 (ENSORLG00000009411)	ENSORLG00000009399	eya3 (ENSORLG00000009396)	si:ch211-195b13.1 (ENSORLG00000009386)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Pomacentridae	ANCESTRAL SPECIES	95	ENSGT00940000163648.b	ENSGT00940000158729.o #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536.u #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Pomacentridae_A	ANCESTRAL SPECIES	132	ENSGT00390000008551 #37	ENSGT00940000163648.b	ENSGT00940000158729.o #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536.u #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b.c	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D
Amphiprion	ANCESTRAL SPECIES	158	ENSGT00940000163648.b	ENSGT00940000158729.o #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536.u #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT01000000216251	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b.c	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364.f #26	ENSGT00510000048364.e #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D
Clown anemonefish	MODERN SPECIES	973													cers4a (ENSAOCG00000015535)	ENSAOCG00000015546	lsm7 (ENSAOCG00000001077)	thrap3b (ENSAOCG00000015572) #22	eva1bb (ENSAOCG00000015588) #24	LSM10 (ENSAOCG00000015607) #26	LSM10 (ENSAOCG00000015618) #26
Orange clownfish	MODERN SPECIES	8	tfap2e (ENSAPEG00000022240) #9	NCDN (ENSAPEG00000022220) #8	ENSAPEG00000022212	ENSAPEG00000022202	KIAA0319L (ENSAPEG00000022186) #7	cap1 (ENSAPEG00000022140)	ppt1 (ENSAPEG00000022102)	rragcb (ENSAPEG00000022074)	ENSAPEG00000022058	fhl3b (ENSAPEG00000022036)	meaf6 (ENSAPEG00000022021) #32	stpg1 (ENSAPEG00000021982)	ENSAPEG00000021910 ##21	eva1bb (ENSAPEG00000021900) #24	ENSAPEG00000021890	thrap3b (ENSAPEG00000021862) #22	LSM10 (ENSAPEG00000021851) #26	LSM10 (ENSAPEG00000021845) #26	oscp1a (ENSAPEG00000021818) #27	ENSAPEG00000021810	zc3h12ab (ENSAPEG00000021795) #31	smim13 (ENSAPEG00000021784)	nedd9 (ENSAPEG00000021755)	TMEM170B (ENSAPEG00000021718)	HIVEP1 (ENSAPEG00000021694)	edn1 (ENSAPEG00000021668)	msto1 (ENSAPEG00000021611)	apoea (ENSAPEG00000021599)	apoa4a (ENSAPEG00000021487)	apoa4a (ENSAPEG00000021446)	tomm40l (ENSAPEG00000021410)
Spiny chromis	MODERN SPECIES	2620																thrap3b (ENSAPOG00000001848) #22	eva1bb (ENSAPOG00000001821) #24
Bicolor damselfish	MODERN SPECIES	2608																thrap3b (ENSSPAG00000009248) #22	eva1bb (ENSSPAG00000009239) #24	LSM10 (ENSSPAG00000009229) #26	oscp1a (ENSSPAG00000009188) #27	ENSSPAG00000009181
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f.r
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.j	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.j	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT01100000263769.b	ENSGT01070000254348	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT01100000263769.b	ENSGT01070000254348	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000163648.b	ENSGT00940000158729 #14	ENSGT00390000012738 #12	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536 #10	ENSGT00950000182848.c.b.b.a #9	ENSGT00390000013601 #8	ENSGT00940000157613 #7	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.j	ENSGT01090000260364.b.b.a	ENSGT00390000010118.c.a.b.i.a	ENSGT01060000249788.a	ENSGT01070000254348.a	ENSGT01070000254348.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242
Zebra mbuna	MODERN SPECIES	1104	ago4 (ENSMZEG00005026346) #14	CLSPN (ENSMZEG00005026344) #12	ENSMZEG00005026343	ENSMZEG00005026340	psmb2 (ENSMZEG00005026338) #10	tfap2e (ENSMZEG00005026336) #9	NCDN (ENSMZEG00005026335) #8	KIAA0319L (ENSMZEG00005026332) #7	cap1 (ENSMZEG00005026329)	ppt1 (ENSMZEG00005026327)	rragcb (ENSMZEG00005026324)	fhl3b (ENSMZEG00005026323)	meaf6 (ENSMZEG00005026320) #32	stpg1 (ENSMZEG00005026316)	map7d1b (ENSMZEG00005026312) #21	thrap3b (ENSMZEG00005026309) #22	eva1bb (ENSMZEG00005026308) #24	LSM10 (ENSMZEG00005026307) #26	oscp1a (ENSMZEG00005026304) #27	ENSMZEG00005026303	ENSMZEG00005026301	ENSMZEG00005026299	ENSMZEG00005026298	ENSMZEG00005026296	ENSMZEG00005026294	ENSMZEG00005026293	ENSMZEG00005026291	ENSMZEG00005026289	zc3h12ab (ENSMZEG00005026287) #31	smim13 (ENSMZEG00005026286)	ENSMZEG00005026285
Eastern happy	MODERN SPECIES	13	ago4 (ENSACLG00000005181) #14	CLSPN (ENSACLG00000005132) #12	ENSACLG00000005127	ENSACLG00000005115	psmb2 (ENSACLG00000005086) #10	tfap2e (ENSACLG00000005058) #9	NCDN (ENSACLG00000005026) #8	KIAA0319L (ENSACLG00000004999) #7	cap1 (ENSACLG00000004977)	ppt1 (ENSACLG00000004957)	rragcb (ENSACLG00000004938)	fhl3b (ENSACLG00000004926)	meaf6 (ENSACLG00000004907) #32	stpg1 (ENSACLG00000004902)	map7d1b (ENSACLG00000004864) #21	thrap3b (ENSACLG00000004763) #22	eva1bb (ENSACLG00000004750) #24	LSM10 (ENSACLG00000004728) #26	oscp1a (ENSACLG00000004687) #27	ENSACLG00000004680	ENSACLG00000004674	ENSACLG00000004658	ENSACLG00000004641	ENSACLG00000004617	ENSACLG00000004607	ENSACLG00000004542	ENSACLG00000004517	ENSACLG00000004502	zc3h12ab (ENSACLG00000004488) #31	smim13 (ENSACLG00000004481)	ENSACLG00000004476
P. nyererei	MODERN SPECIES	388	ago4 (ENSPNYG00000002089) #14	CLSPN (ENSPNYG00000002159) #12	ENSPNYG00000002405	cdca5 (ENSPNYG00000002457)	psmb2 (ENSPNYG00000002470) #10	tfap2e (ENSPNYG00000002494) #9	NCDN (ENSPNYG00000002533) #8	KIAA0319L (ENSPNYG00000002650) #7	cap1 (ENSPNYG00000002687)	ppt1 (ENSPNYG00000002732)	rragcb (ENSPNYG00000002775)	fhl3b (ENSPNYG00000002809)	meaf6 (ENSPNYG00000002859) #32	stpg1 (ENSPNYG00000002988)	map7d1b (ENSPNYG00000003016) #21	thrap3b (ENSPNYG00000003062) #22	eva1bb (ENSPNYG00000003106) #24	LSM10 (ENSPNYG00000003138) #26	oscp1a (ENSPNYG00000003173) #27	ENSPNYG00000003238	ENSPNYG00000003253	ENSPNYG00000003267	ENSPNYG00000003289	zc3h12ab (ENSPNYG00000003297) #31	smim13 (ENSPNYG00000003320)	nedd9 (ENSPNYG00000003335)	ENSPNYG00000003341	TMEM170B (ENSPNYG00000003350)	HIVEP1 (ENSPNYG00000003371)	edn1 (ENSPNYG00000003412)	si:dkeyp-92c9.2 (ENSPNYG00000003471)
Burton s mouthbrooder	MODERN SPECIES	524	ago4 (ENSHBUG00000001525) #14	CLSPN (ENSHBUG00000001542) #12	ENSHBUG00000001554	cdca5 (ENSHBUG00000001559)	psmb2 (ENSHBUG00000001568) #10	tfap2e (ENSHBUG00000001580) #9	NCDN (ENSHBUG00000001587) #8	KIAA0319L (ENSHBUG00000001599) #7	cap1 (ENSHBUG00000001615)	ppt1 (ENSHBUG00000001625)	rragcb (ENSHBUG00000001632)	fhl3b (ENSHBUG00000001636)	meaf6 (ENSHBUG00000001648) #32	stpg1 (ENSHBUG00000001653)	map7d1b (ENSHBUG00000001680) #21	thrap3b (ENSHBUG00000001708) #22	eva1bb (ENSHBUG00000001719) #24	LSM10 (ENSHBUG00000001722) #26	oscp1a (ENSHBUG00000001728) #27	ENSHBUG00000001735	ENSHBUG00000001743
Lyretail cichlid	MODERN SPECIES	322	ago4 (ENSNBRG00000013492) #14	CLSPN (ENSNBRG00000013539) #12	ENSNBRG00000013713	ENSNBRG00000013760	psmb2 (ENSNBRG00000013797) #10	tfap2e (ENSNBRG00000013819) #9	ENSNBRG00000013858 #8	ENSNBRG00000013921 #7	cap1 (ENSNBRG00000013979)	ppt1 (ENSNBRG00000014017)	rragcb (ENSNBRG00000014036)	fhl3b (ENSNBRG00000014055)	meaf6 (ENSNBRG00000014080) #32	stpg1 (ENSNBRG00000014134)	map7d1b (ENSNBRG00000014183) #21	thrap3b (ENSNBRG00000014237) #22	eva1bb (ENSNBRG00000014294) #24	LSM10 (ENSNBRG00000014306) #26	oscp1a (ENSNBRG00000014319) #27	ENSNBRG00000014359	zc3h12ab (ENSNBRG00000014376) #31	smim13 (ENSNBRG00000014425)	nedd9 (ENSNBRG00000014432)	ENSNBRG00000014486	TMEM170B (ENSNBRG00000014493)	HIVEP1 (ENSNBRG00000014508)	edn1 (ENSNBRG00000014550)	si:dkeyp-92c9.2 (ENSNBRG00000014568)	myo1g (ENSNBRG00000014579)	si:ch211-195b13.1 (ENSNBRG00000014644)	eya3 (ENSNBRG00000014682)
Nile tilapia	MODERN SPECIES	13	ago4 (ENSONIG00000013603) #14	CLSPN (ENSONIG00000013618) #12	ENSONIG00000032443	cdca5 (ENSONIG00000013627)	psmb2 (ENSONIG00000013628) #10	tfap2e (ENSONIG00000013632) #9	NCDN (ENSONIG00000013638) #8	KIAA0319L (ENSONIG00000013646) #7	cap1 (ENSONIG00000013650)	ppt1 (ENSONIG00000013654)	rragcb (ENSONIG00000013658)	fhl3b (ENSONIG00000016304)	meaf6 (ENSONIG00000013665) #32	stpg1 (ENSONIG00000013668)	map7d1b (ENSONIG00000013670) #21	thrap3b (ENSONIG00000013673) #22	eva1bb (ENSONIG00000013681) #24	LSM10 (ENSONIG00000020904) #26	oscp1a (ENSONIG00000013682) #27	ENSONIG00000032030	ENSONIG00000039124	ENSONIG00000013684	ENSONIG00000028012	ENSONIG00000032847	ENSONIG00000035261	zc3h12ab (ENSONIG00000013685) #31	smim13 (ENSONIG00000042839)	nedd9 (ENSONIG00000013688)	ENSONIG00000027700	tmem170b (ENSONIG00000027709)	HIVEP1 (ENSONIG00000013692)
Midas cichlid	MODERN SPECIES	1145	ENSACIG00000014590 #14	CLSPN (ENSACIG00000014619) #12	ENSACIG00000014975	cdca5 (ENSACIG00000014987)	psmb2 (ENSACIG00000014995) #10	tfap2e (ENSACIG00000015015) #9	ENSACIG00000015036 #8	KIAA0319L (ENSACIG00000015054) #7	cap1 (ENSACIG00000015108)	ppt1 (ENSACIG00000015133)	rragcb (ENSACIG00000015168)	fhl3b (ENSACIG00000015186)	meaf6 (ENSACIG00000015202) #32	stpg1 (ENSACIG00000015255)	map7d1b (ENSACIG00000015299) #21	thrap3b (ENSACIG00000015331) #22	eva1bb (ENSACIG00000015385) #24	LSM10 (ENSACIG00000015420) #26	oscp1a (ENSACIG00000015426) #27	ENSACIG00000015456	ENSACIG00000015467	ENSACIG00000015475
Tiger tail seahorse	MODERN SPECIES	328	cdca8 (ENSHCOG00000003685)	ago4 (ENSHCOG00000003725) #14	CLSPN (ENSHCOG00000003741) #12	ENSHCOG00000003758	ENSHCOG00000003772	psmb2 (ENSHCOG00000003803) #10	tfap2e (ENSHCOG00000003827) #9	NCDN (ENSHCOG00000003839) #8	KIAA0319L (ENSHCOG00000003961) #7	cap1 (ENSHCOG00000003977)	rragcb (ENSHCOG00000003986)	ppt1 (ENSHCOG00000004004)	fhl3b (ENSHCOG00000004026)	meaf6 (ENSHCOG00000004069) #32	ENSHCOG00000004092 #21	thrap3b (ENSHCOG00000004098) #22	eva1bb (ENSHCOG00000004121) #24	oscp1a (ENSHCOG00000004224) #27	zc3h12ab (ENSHCOG00000004255) #31	smim13 (ENSHCOG00000004269)	nedd9 (ENSHCOG00000004279)
Pinecone sodierfish	MODERN SPECIES	2	ago4 (ENSMMDG00005021010) #14	CLSPN (ENSMMDG00005020985) #12	ENSMMDG00005020984	cdca5 (ENSMMDG00005020983)	psmb2 (ENSMMDG00005020981) #10	tfap2e (ENSMMDG00005020979) #9	NCDN (ENSMMDG00005020974) #8	KIAA0319L (ENSMMDG00005019489) #7	cap1 (ENSMMDG00005019452)	ppt1 (ENSMMDG00005019225)	rragcb (ENSMMDG00005019217)	fhl3b (ENSMMDG00005019214)	meaf6 (ENSMMDG00005019209) #32	stpg1 (ENSMMDG00005019205)	map7d1b (ENSMMDG00005019203) #21	thrap3b (ENSMMDG00005019200) #22	eva1bb (ENSMMDG00005019196) #24	LSM10 (ENSMMDG00005019195) #26	oscp1a (ENSMMDG00005019191) #27	ENSMMDG00005019189	ENSMMDG00005019186	ENSMMDG00005019184 #31	zc3h12ab (ENSMMDG00005019182) #31	smim13 (ENSMMDG00005019180)	nedd9 (ENSMMDG00005019178)	TMEM170B (ENSMMDG00005019175)	HIVEP1 (ENSMMDG00005019157)	edn1 (ENSMMDG00005019150)	ENSMMDG00005019149	myo1g (ENSMMDG00005019146)	si:ch211-195b13.1 (ENSMMDG00005017403)
Cod	MODERN SPECIES	14	psmb2 (ENSGMOG00000028958) #10	TFAP2E (ENSGMOG00000009513) #9	NCDN (ENSGMOG00000022584) #8	KIAA0319L (ENSGMOG00000012803) #7	ENSGMOG00000029342	ENSGMOG00000024806	ENSGMOG00000035476	ENSGMOG00000015918	ENSGMOG00000015901	rragcb (ENSGMOG00000015890)	fhl3b (ENSGMOG00000033464)	meaf6 (ENSGMOG00000007357) #32	stpg1 (ENSGMOG00000024695)	map7d1b (ENSGMOG00000022540) #21	ENSGMOG00000001665	thrap3b (ENSGMOG00000023763) #22	eva1bb (ENSGMOG00000017569) #24	LSM10 (ENSGMOG00000019832) #26	oscp1a (ENSGMOG00000017579) #27	ENSGMOG00000017593	ENSGMOG00000026488	zc3h12ab (ENSGMOG00000030776) #31	smim13 (ENSGMOG00000025692)	nedd9 (ENSGMOG00000030633)	TMEM170B (ENSGMOG00000029827)	HIVEP1 (ENSGMOG00000011398)	edn1 (ENSGMOG00000034660)	myo1g (ENSGMOG00000011448)	si:ch211-195b13.1 (ENSGMOG00000012874)	eya3 (ENSGMOG00000012887)	ENSGMOG00000030508
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000164147.a	ENSGT00940000160519.a.a	ENSGT00940000154450.uc	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00940000158787	ENSGT00940000159442	ENSGT00390000017974.ob	ENSGT01090000260070.C.a	ENSGT00390000017974.nb	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b	ENSGT00390000015257 #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00940000154096.b.b.b.b.a #24	ENSGT00510000048364 #26	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	362	ENSGT00550000074870.y.b.b	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b	ENSGT00940000154450.tc.a	ENSGT00940000158787.h.a	ENSGT01090000260070.C.b.d	ENSGT00390000017974.ob.f	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f	ENSGT00390000015257.h #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e #21	ENSGT00950000183163.a.a.bb.c #22	ENSGT00940000154096.b.b.b.b.a.b #24	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d #31	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00940000158587.c.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a	ENSGT01090000260070.C.b.d	ENSGT00390000017974.ob.f	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f	ENSGT00390000015257.h #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e #21	ENSGT00950000183163.a.a.bb.c #22	ENSGT00940000154096.b.b.b.b.a.b #24	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d #31	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u	ENSGT00940000164496.a.a.b
Salmo	ANCESTRAL SPECIES	2	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a	ENSGT01090000260070.C.b.d	ENSGT00390000017974.ob.f	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f	ENSGT00390000015257.h #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e #21	ENSGT00950000183163.a.a.bb.c #22	ENSGT00940000154096.b.b.b.b.a.b #24	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d #31	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.c	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u	ENSGT00940000164496.a.a.b	ENSGT00950000182978.B.e
River trout	MODERN SPECIES	29	sdha (ENSSTUG00000037969)	ccdc127b (ENSSTUG00000038676)	CFAP69 (ENSSTUG00000038689)	slc9a1b (ENSSTUG00000038794)	MAN1C1 (ENSSTUG00000039533)	ENSSTUG00000039655	srsf10b (ENSSTUG00000039664)	ENSSTUG00000039678	ENSSTUG00000039683	mycbp (ENSSTUG00000039721)	ENSSTUG00000039736	fhl3b (ENSSTUG00000039744)	meaf6 (ENSSTUG00000039757) #32	stpg1 (ENSSTUG00000039823)	map7d1b (ENSSTUG00000039850) #21	thrap3b (ENSSTUG00000039900) #22	eva1bb (ENSSTUG00000039941) #24	ENSSTUG00000039956	gstr (ENSSTUG00000039963)	oscp1a (ENSSTUG00000039983) #27	ENSSTUG00000040003	zc3h12ab (ENSSTUG00000040008) #31	smim13 (ENSSTUG00000040014)	nedd9 (ENSSTUG00000040022)	TMEM170B (ENSSTUG00000040049)	HIVEP1 (ENSSTUG00000040056)	edn1 (ENSSTUG00000040060)	si:dkeyp-92c9.2 (ENSSTUG00000040079)	myo1g (ENSSTUG00000040110)	si:ch211-195b13.1 (ENSSTUG00000040952)	eya3 (ENSSTUG00000040997)
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000020652	ccdc127 (ENSSSAG00000020001)	ENSSSAG00000018117	slc9a1b (ENSSSAG00000017046)	ENSSSAG00000009871	srsf10b (ENSSSAG00000104443)	ENSSSAG00000009809	ENSSSAG00000009802	gja9b (ENSSSAG00000009793)	mycbp (ENSSSAG00000115673)	ENSSSAG00000101880	fhl3 (ENSSSAG00000009766)	meaf6 (ENSSSAG00000009744) #32	stpg1 (ENSSSAG00000009729)	map7d1b (ENSSSAG00000009702) #21	thrap3b (ENSSSAG00000009695) #22	CA078 (ENSSSAG00000009689) #24	ENSSSAG00000106209	oscp1a (ENSSSAG00000009407) #27	ENSSSAG00000009391	zc3h12ab (ENSSSAG00000087542) #31	ENSSSAG00000092580	nedd9 (ENSSSAG00000009361)	TMEM170B (ENSSSAG00000112888)	HIVEP1 (ENSSSAG00000009332)	edn1 (ENSSSAG00000119261)	ENSSSAG00000119580	si:dkeyp-92c9.2 (ENSSSAG00000103119)	myo1g (ENSSSAG00000008639)	si:ch211-195b13.1 (ENSSSAG00000008591)	ENSSSAG00000087922
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000164635	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a	ENSGT01090000260070.C.b.d	ENSGT00390000017974.ob.f	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f	ENSGT00390000015257.h #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e #21	ENSGT00950000183163.a.a.bb.c #22	ENSGT00940000154096.b.b.b.b.a.b #24	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d #31	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.f	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u	ENSGT00940000164496.a.a.b
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a	ENSGT01090000260070.C.b.d	ENSGT00390000017974.ob.f	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f	ENSGT00390000015257.h #32	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e #21	ENSGT00950000183163.a.a.bb.c #22	ENSGT00940000154096.b.b.b.b.a.b #24	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f #27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d #31	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.f	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u	ENSGT00940000164496.a.a.b
Coho salmon	MODERN SPECIES	5	ENSOKIG00005005629	CFAP69 (ENSOKIG00005005523)	slc9a1b (ENSOKIG00005004498)	MAN1C1 (ENSOKIG00005022347)	ENSOKIG00005022330	srsf10b (ENSOKIG00005022322)	ENSOKIG00005022314	ENSOKIG00005022300	gja9b (ENSOKIG00005022289)	mycbp (ENSOKIG00005022266)	ENSOKIG00005022253	fhl3b (ENSOKIG00005022242)	meaf6 (ENSOKIG00005022194) #32	stpg1 (ENSOKIG00005022179)	map7d1b (ENSOKIG00005022142) #21	thrap3b (ENSOKIG00005022125) #22	eva1bb (ENSOKIG00005022113) #24	ENSOKIG00005022105	gstr (ENSOKIG00005022094)	oscp1a (ENSOKIG00005022041) #27	ENSOKIG00005022035	zc3h12ab (ENSOKIG00005022030) #31	smim13 (ENSOKIG00005022016)	nedd9 (ENSOKIG00005022006)	TMEM170B (ENSOKIG00005021995)	HIVEP1 (ENSOKIG00005021986)	edn1 (ENSOKIG00005021979)	ENSOKIG00005021969	si:dkeyp-92c9.2 (ENSOKIG00005021966)	myo1g (ENSOKIG00005021794)	si:ch211-195b13.1 (ENSOKIG00005021720)
Chinook salmon	MODERN SPECIES	24	ccdc127b (ENSOTSG00005006427)	ENSOTSG00005006428	CFAP69 (ENSOTSG00005006429)	slc9a1b (ENSOTSG00005006434)	MAN1C1 (ENSOTSG00005006586)	ENSOTSG00005006591	srsf10b (ENSOTSG00005006592)	ENSOTSG00005006595	gja9b (ENSOTSG00005006597)	mycbp (ENSOTSG00005006599)	ENSOTSG00005006600	fhl3b (ENSOTSG00005006601)	meaf6 (ENSOTSG00005006603) #32	stpg1 (ENSOTSG00005006604)	map7d1b (ENSOTSG00005006605) #21	thrap3b (ENSOTSG00005006607) #22	eva1bb (ENSOTSG00005006608) #24	ENSOTSG00005006609	gstr (ENSOTSG00005006610)	oscp1a (ENSOTSG00005006612) #27	ENSOTSG00005006617	zc3h12ab (ENSOTSG00005006618) #31	ENSOTSG00005006620	smim13 (ENSOTSG00005006622)	nedd9 (ENSOTSG00005006624)	TMEM170B (ENSOTSG00005006626)	HIVEP1 (ENSOTSG00005006631)	edn1 (ENSOTSG00005006634)	si:dkeyp-92c9.2 (ENSOTSG00005006642)	myo1g (ENSOTSG00005006644)	si:ch211-195b13.1 (ENSOTSG00005006718)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000006505	ENSOMYG00000006584	slc9a1b (ENSOMYG00000007199)	ENSOMYG00000008042	ENSOMYG00000008120	srsf10b (ENSOMYG00000071968)	ENSOMYG00000008154	ENSOMYG00000008192	gja9b (ENSOMYG00000069617)	mycbp (ENSOMYG00000008266)	ENSOMYG00000008221	fhl3b (ENSOMYG00000008287)	meaf6 (ENSOMYG00000008396) #32	stpg1 (ENSOMYG00000008440)	map7d1b (ENSOMYG00000008563) #21	thrap3b (ENSOMYG00000008733) #22	eva1bb (ENSOMYG00000008754) #24	ENSOMYG00000054099	ENSOMYG00000008773	ENSOMYG00000008805	oscp1a (ENSOMYG00000008917) #27	ENSOMYG00000008955	zc3h12ab (ENSOMYG00000058082) #31	smim13 (ENSOMYG00000008986)	nedd9 (ENSOMYG00000009014)	TMEM170B (ENSOMYG00000048814)	HIVEP1 (ENSOMYG00000009085)	ENSOMYG00000074796	edn1 (ENSOMYG00000077425)	si:dkeyp-92c9.2 (ENSOMYG00000009133)	ENSOMYG00000049691
Huchen	MODERN SPECIES	249	ccdc127b (ENSHHUG00000029169)	ENSHHUG00000029171	CFAP69 (ENSHHUG00000029173)	slc9a1b (ENSHHUG00000029191)	MAN1C1 (ENSHHUG00000029227)	ENSHHUG00000029263	srsf10b (ENSHHUG00000029267)	ENSHHUG00000029272	gja9b (ENSHHUG00000029286)	mycbp (ENSHHUG00000029287)	ENSHHUG00000029301	fhl3b (ENSHHUG00000029346)	meaf6 (ENSHHUG00000029351) #32	stpg1 (ENSHHUG00000029428)	map7d1b (ENSHHUG00000029434) #21	thrap3b (ENSHHUG00000029460) #22	eva1bb (ENSHHUG00000029470) #24	ENSHHUG00000029474	gstr (ENSHHUG00000029478)	oscp1a (ENSHHUG00000029498) #27	ENSHHUG00000029507	zc3h12ab (ENSHHUG00000029509) #31	ENSHHUG00000029512	nedd9 (ENSHHUG00000029518)	TMEM170B (ENSHHUG00000029522)	HIVEP1 (ENSHHUG00000029527)	edn1 (ENSHHUG00000029529)	ENSHHUG00000029540	si:dkeyp-92c9.2 (ENSHHUG00000029553)	ENSHHUG00000029556
Salmoninae	ANCESTRAL SPECIES	513															ENSGT00950000182941.a.a.b.e.b.f #21	ENSGT00950000183163.a.a.bb.d #22	ENSGT00940000154096.b.b.b.b.a.a #24	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c #31	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b.b	ENSGT00530000063698.b.k.a
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00390000014398	ENSGT00550000074870.y.b.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT00940000156338.b.c	ENSGT01090000260268.B	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b	ENSGT01090000260070.C.b.c	ENSGT00390000017974.ob.e	ENSGT00950000183028.a.b.b.e	ENSGT00390000015257.g #32	ENSGT00950000182941.a.a.b.e.b.f #21	ENSGT00950000183163.a.a.bb.d #22	ENSGT00940000154096.b.b.b.b.a.a #24	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c #31	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a.a.b
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000014398	ENSGT00550000074870.z	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT00940000156338.b.c	ENSGT01090000260268.B	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b	ENSGT01090000260070.C.b.c	ENSGT00390000017974.ob.e	ENSGT00950000183028.a.b.b.e	ENSGT00390000015257.g #32	ENSGT00950000182941.a.a.b.e.b.f #21	ENSGT00950000183163.a.a.bb.d #22	ENSGT00940000154096.b.b.b.b.a.a #24	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c #31	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000160424.d	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e
River trout	MODERN SPECIES	27	ENSSTUG00000049547	wdyhv1 (ENSSTUG00000049549)	ENSSTUG00000049554	sdha (ENSSTUG00000049562)	ENSSTUG00000049646	KDM1B (ENSSTUG00000049671)	ENSSTUG00000049820	ENSSTUG00000049824	srsf10b (ENSSTUG00000049827)	ENSSTUG00000049828	gja9b (ENSSTUG00000049829)	mycbp (ENSSTUG00000049830)	fhl3b (ENSSTUG00000049833)	meaf6 (ENSSTUG00000049837) #32	map7d1b (ENSSTUG00000049845) #21	thrap3b (ENSSTUG00000049859) #22	eva1bb (ENSSTUG00000049862) #24	ENSSTUG00000049864	ENSSTUG00000049865	zc3h12ab (ENSSTUG00000049867) #31	ENSSTUG00000049870	ENSSTUG00000049873	smim13 (ENSSTUG00000049875)	nedd9 (ENSSTUG00000049876)	TMEM170B (ENSSTUG00000049879)	ENSSTUG00000049882	ENSSTUG00000049883	HIVEP1 (ENSSTUG00000049885)	edn1 (ENSSTUG00000049892)	ENSSTUG00000049896	si:dkeyp-92c9.2 (ENSSTUG00000049897)
Atlantic salmon	MODERN SPECIES	19	PSA2 (ENSSSAG00000065065)	sdha (ENSSSAG00000065157)	ENSSSAG00000065391	ENSSSAG00000065417	ENSSSAG00000065537	ENSSSAG00000065544	fusip (ENSSSAG00000065557)	ENSSSAG00000065563	ENSSSAG00000065568	MYCBP (ENSSSAG00000065576)	fhl3b (ENSSSAG00000029717)	meaf6 (ENSSSAG00000065622) #32	map7d1b (ENSSSAG00000065668) #21	ENSSSAG00000120157	ENSSSAG00000107737	thrap3b (ENSSSAG00000065686) #22	ENSSSAG00000112097	eva1bb (ENSSSAG00000065693) #24	ENSSSAG00000097800	ENSSSAG00000082376	zc3h12ab (ENSSSAG00000065703) #31	ENSSSAG00000065705	nedd9 (ENSSSAG00000065717)	TMEM170B (ENSSSAG00000113777)	HIVEP1 (ENSSSAG00000065742)	edn1 (ENSSSAG00000101758)	ENSSSAG00000115447	si:dkeyp-92c9.2 (ENSSSAG00000100702)	myo1g (ENSSSAG00000065838)	si:ch211-195b13.1 (ENSSSAG00000070370)	eya3 (ENSSSAG00000070408)
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00530000063461.A.b.a	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.y.b.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b	ENSGT01090000260070.C.b.c	ENSGT00390000017974.ob.e	ENSGT00950000183028.a.b.b.e	ENSGT00390000015257.g #32	ENSGT00950000182941.a.a.b.e.b.f #21	ENSGT00950000183163.a.a.bb.d #22	ENSGT00940000154096.b.b.b.b.a.a #24	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c #31	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000160424.e.a	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.y.b.a.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT01010000222294.c.b.b.b.c.a.a.b.b.b	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b	ENSGT01090000260070.C.b.c	ENSGT00390000017974.ob.e	ENSGT00950000183028.a.b.b.e	ENSGT00390000015257.g #32	ENSGT00950000182941.a.a.b.e.b.f #21	ENSGT00950000183163.a.a.bb.d #22	ENSGT00940000154096.b.b.b.b.a.a #24	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c #31	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a.a.b
Coho salmon	MODERN SPECIES	8	PSMA2 (ENSOKIG00005011832)	SDHA (ENSOKIG00005011241)	ENSOKIG00005011197	KDM1B (ENSOKIG00005008784)	ENSOKIG00005008619	ENSOKIG00005008596	srsf10b (ENSOKIG00005008586)	ENSOKIG00005008560	gja9b (ENSOKIG00005008547)	mycbp (ENSOKIG00005008503)	ENSOKIG00005008490	fhl3b (ENSOKIG00005008474)	meaf6 (ENSOKIG00005008377) #32	ENSOKIG00005008358	map7d1b (ENSOKIG00005008325) #21	thrap3b (ENSOKIG00005008296) #22	eva1bb (ENSOKIG00005008280) #24	ENSOKIG00005008272	ENSOKIG00005008256	zc3h12ab (ENSOKIG00005008248) #31	ENSOKIG00005008239	smim13 (ENSOKIG00005008230)	nedd9 (ENSOKIG00005008220)	ENSOKIG00005008209	HIVEP1 (ENSOKIG00005008183)	edn1 (ENSOKIG00005008167)	si:dkeyp-92c9.2 (ENSOKIG00005008159)	myo1g (ENSOKIG00005008044)	si:ch211-195b13.1 (ENSOKIG00005007972)	eya3 (ENSOKIG00005007614)	ENSOKIG00005007588
Chinook salmon	MODERN SPECIES	168															map7d1b (ENSOTSG00005040502) #21	thrap3b (ENSOTSG00005040504) #22	eva1bb (ENSOTSG00005040505) #24	ENSOTSG00005040507	ENSOTSG00005040508	zc3h12ab (ENSOTSG00005040509) #31	ENSOTSG00005040511	smim13 (ENSOTSG00005040513)	nedd9 (ENSOTSG00005040514)	ENSOTSG00005040515
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000015210	ENSOMYG00000015231	ENSOMYG00000075620	ENSOMYG00000048139	ENSOMYG00000052675	ENSOMYG00000034716	ENSOMYG00000034739	ENSOMYG00000034814	ENSOMYG00000035537	ENSOMYG00000038115	ENSOMYG00000038127	ENSOMYG00000038140	ENSOMYG00000038145	ENSOMYG00000038158	ENSOMYG00000038213 #32	thrap3b (ENSOMYG00000038293) #22	ENSOMYG00000064147	eva1bb (ENSOMYG00000065233) #24	ENSOMYG00000038361	ENSOMYG00000038370	zc3h12ab (ENSOMYG00000038385) #31	ENSOMYG00000061150	smim13 (ENSOMYG00000038404)	nedd9 (ENSOMYG00000038414)	TMEM170B (ENSOMYG00000050599)	HIVEP1 (ENSOMYG00000038495)	ENSOMYG00000077522	edn1 (ENSOMYG00000038507)	si:dkeyp-92c9.2 (ENSOMYG00000038524)	myo1g (ENSOMYG00000076588)	si:ch211-195b13.1 (ENSOMYG00000038591)
Huchen	MODERN SPECIES	2600																thrap3b (ENSHHUG00000009965) #22	eva1bb (ENSHHUG00000009952) #24	ENSHHUG00000009944	ENSHHUG00000009935	zc3h12ab (ENSHHUG00000009932) #31	ENSHHUG00000009926	ENSHHUG00000009919	smim13 (ENSHHUG00000009915)	nedd9 (ENSHHUG00000009903)
Northern pike	MODERN SPECIES	9	CFAP69 (ENSELUG00000007995)	slc9a1b (ENSELUG00000007970)	ENSELUG00000034496	ENSELUG00000000287	ENSELUG00000007901	srsf10b (ENSELUG00000007888)	ENSELUG00000029192	akirin1 (ENSELUG00000007858)	gja9b (ENSELUG00000007830)	mycbp (ENSELUG00000031004)	ENSELUG00000007786	fhl3b (ENSELUG00000007755)	meaf6 (ENSELUG00000028481) #32	stpg1 (ENSELUG00000007684)	map7d1b (ENSELUG00000007639) #21	thrap3b (ENSELUG00000007499) #22	eva1bb (ENSELUG00000030974) #24	LSM10 (ENSELUG00000007452) #26	oscp1a (ENSELUG00000007413) #27	ENSELUG00000007378	ENSELUG00000029369	zc3h12ab (ENSELUG00000007368) #31	smim13 (ENSELUG00000030404)	nedd9 (ENSELUG00000007314)	TMEM170B (ENSELUG00000007252)	HIVEP1 (ENSELUG00000007223)	edn1 (ENSELUG00000007183)	rbm24a (ENSELUG00000007163)	cap2 (ENSELUG00000007130)	ENSELUG00000027226	vps28 (ENSELUG00000006986)
Osteoglossiformes	ANCESTRAL SPECIES	1									ENSGT00990000203527.b	ENSGT00950000182894.D #17	ENSGT00940000156338.b	ENSGT00390000017974.ob	ENSGT00950000183028.a.b.b	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b #21	ENSGT00950000183163.a.a.bb #22	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f #27	ENSGT00510000048364 #26	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D.b	ENSGT00390000008812.b.a	ENSGT00940000158053.r	ENSGT01100000263475.f.b.b	ENSGT00940000173852	ENSGT00940000164496.a.a.i	ENSGT00950000182978.B	ENSGT01090000260093.b.e
P. kingsleyae	MODERN SPECIES	13	mylipa (ENSPKIG00000002991)	gmpr (ENSPKIG00000003016)	atxn1a (ENSPKIG00000003054)	ENSPKIG00000003088	lim2.4 (ENSPKIG00000003113)	USF2 (ENSPKIG00000003150)	ENSPKIG00000003201	tekt2 (ENSPKIG00000003234) #17	slc9a1b (ENSPKIG00000003284)	srsf10b (ENSPKIG00000003304)	ENSPKIG00000003346	mycbp (ENSPKIG00000003459)	fhl3b (ENSPKIG00000003480)	stpg1 (ENSPKIG00000003521)	map7d1b (ENSPKIG00000003598) #21	thrap3b (ENSPKIG00000003697) #22	LSM10 (ENSPKIG00000003728) #26	smim13 (ENSPKIG00000003755)	nedd9 (ENSPKIG00000003771)	TMEM170B (ENSPKIG00000003794)	HIVEP1 (ENSPKIG00000003860)	edn1 (ENSPKIG00000003920)	si:dkeyp-92c9.2 (ENSPKIG00000003949)	myo1g (ENSPKIG00000003975)	ENSPKIG00000004118	ENSPKIG00000004298
Asian bonytongue	MODERN SPECIES	15												LIM2 (ENSSFOG00015003041)	ENSSFOG00015003032	tekt2 (ENSSFOG00015002930) #17	slc9a1b (ENSSFOG00015002622)	thrap3b (ENSSFOG00015002576) #22	ENSSFOG00015026830	ENSSFOG00015002542	ENSSFOG00015028838	OSCP1 (ENSSFOG00015019909) #27	LSM10 (ENSSFOG00015019954) #26	smim13 (ENSSFOG00015019966)	nedd9 (ENSSFOG00015019973)	TMEM170B (ENSSFOG00015019988)	HIVEP1 (ENSSFOG00015020001)	ENSSFOG00015029250	EDN1 (ENSSFOG00015020014)	ENSSFOG00015029459	si:dkeyp-92c9.2 (ENSSFOG00015028986)	myo1g (ENSSFOG00015020082)	si:ch211-195b13.1 (ENSSFOG00015020217)
Reedfish	MODERN SPECIES	5	gpn2 (ENSECRG00000018368)	gpatch3 (ENSECRG00000018324)	nudc (ENSECRG00000018283)	nr0b2a (ENSECRG00000018264)	ENSECRG00000018244	tpbga (ENSECRG00000018227)	tmem222a (ENSECRG00000018153)	wdtc1 (ENSECRG00000018055)	ENSECRG00000018025	ENSECRG00000017999	ENSECRG00000017973	ENSECRG00000017909	map7d1a (ENSECRG00000017823) #21	ENSECRG00000017791	ENSECRG00000017775	THRAP3 (ENSECRG00000017732) #22	sh3d21 (ENSECRG00000017668) #23	ENSECRG00000017616 #29	mrps15 (ENSECRG00000017586) #28	ENSECRG00000017570	ENSECRG00000017548	oscp1a (ENSECRG00000017499) #27	LSM10 (ENSECRG00000017463) #26	STK40 (ENSECRG00000017419) #25	eva1ba (ENSECRG00000017402) ##24	GRIK3 (ENSECRG00000017341) #30	ENSECRG00000017297 #30	zc3h12ab (ENSECRG00000017281) #31	sf3a3 (ENSECRG00000017175)	INPP5B (ENSECRG00000017088)	mtf1 (ENSECRG00000017059)
Elephant shark	MODERN SPECIES	1656													MAP3K6 (ENSCMIG00000013489)	ENSCMIG00000013462	ENSCMIG00000013454 #21	THRAP3 (ENSCMIG00000013447) #22	ENSCMIG00000013444 #23	eva1ba (ENSCMIG00000013443) #24	STK40 (ENSCMIG00000013436) #25	LSM10 (ENSCMIG00000013432) #26	oscp1a (ENSCMIG00000013431) #27	ENSCMIG00000013427	ENSCMIG00000013425 #28	TINAGL1 (ENSCMIG00000013423)	fam49al (ENSCMIG00000013421)	trit1 (ENSCMIG00000013419)	ENSCMIG00000013417	ENSCMIG00000013415	meaf6 (ENSCMIG00000013414) #32	SNIP1 (ENSCMIG00000013413) #33	dnali1 (ENSCMIG00000013411) #34
Gnathostomata	ANCESTRAL SPECIES	177									ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799
Euteleostomi	ANCESTRAL SPECIES	178										ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674
Sarcopterygii	ANCESTRAL SPECIES	163									ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674	ENSGT00390000013823.b
Amniota	ANCESTRAL SPECIES	1	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Mammalia	ANCESTRAL SPECIES	2	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Theria	ANCESTRAL SPECIES	4	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Diprotodontia_a	ANCESTRAL SPECIES	23									ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00510000046986.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b
koala	MODERN SPECIES	27									ENSPCIG00000027248	ENSPCIG00000027249	IL20RA (ENSPCIG00000027252)	SLC35D3 (ENSPCIG00000027254)	PEX7 (ENSPCIG00000027255)	MAP3K5 (ENSPCIG00000028208)	MAP7 (ENSPCIG00000014046) ##21	BCLAF1 (ENSPCIG00000017609) ##22	ENSPCIG00000026708	PDE7B (ENSPCIG00000026715)	ENSPCIG00000001356	MYB (ENSPCIG00000023931)	HBS1L (ENSPCIG00000013363)	ALDH8A1 (ENSPCIG00000013617)	ENSPCIG00000006039	SGK1 (ENSPCIG00000034420)	SLC2A12 (ENSPCIG00000008803)	TBPL1 (ENSPCIG00000008805)	TCF21 (ENSPCIG00000008807)	EYA4 (ENSPCIG00000028725)	RPS12 (ENSPCIG00000028027)	SLC18B1 (ENSPCIG00000028026)	ENSPCIG00000013800
Common wonbat	MODERN SPECIES	577	NHSL1 (ENSVURG00010003237)	HEBP2 (ENSVURG00010003262)	SMIM28 (ENSVURG00010003271)	ARFGEF3 (ENSVURG00010003304)	PERP (ENSVURG00010003438)	ENSVURG00010003453	OLIG3 (ENSVURG00010003481)	ENSVURG00010003486	ENSVURG00010003490	ENSVURG00010003502	IL20RA (ENSVURG00010003508)	SLC35D3 (ENSVURG00010003517)	PEX7 (ENSVURG00010003525)	MAP3K5 (ENSVURG00010003540)	MAP7 (ENSVURG00010003588) ##21	BCLAF1 (ENSVURG00010003667) ##22	ENSVURG00010003889	PDE7B (ENSVURG00010003925)	AHI1 (ENSVURG00010003974)	MYB (ENSVURG00010004030)	HBS1L (ENSVURG00010004148)	ALDH8A1 (ENSVURG00010004171)	ENSVURG00010004180	SGK1 (ENSVURG00010004201)	SLC2A12 (ENSVURG00010004295)	TBPL1 (ENSVURG00010004299)	TCF21 (ENSVURG00010004318)	ENSVURG00010004337	EYA4 (ENSVURG00010004394)	ENSVURG00010005354	SLC18B1 (ENSVURG00010005375)
Wallaby	MODERN SPECIES	2937																BCLAF1 (ENSMEUG00000013217) ##22
Tasmanian devil	MODERN SPECIES	3	CCDC28A (ENSSHAG00000022209)	NHSL1 (ENSSHAG00000001393)	HEBP2 (ENSSHAG00000000026)	SMIM28 (ENSSHAG00000031958)	ARFGEF3 (ENSSHAG00000012424)	PERP (ENSSHAG00000024598)	TNFAIP3 (ENSSHAG00000010469)	OLIG3 (ENSSHAG00000007183)	ENSSHAG00000023943	ENSSHAG00000024867	IL20RA (ENSSHAG00000024345)	SLC35D3 (ENSSHAG00000014435)	PEX7 (ENSSHAG00000014094)	MAP3K5 (ENSSHAG00000012760)	MAP7 (ENSSHAG00000011432) ##21	BCLAF1 (ENSSHAG00000010721) ##22	MTFR2 (ENSSHAG00000010457)	PDE7B (ENSSHAG00000009844)	ENSSHAG00000015549	ENSSHAG00000029987	MYB (ENSSHAG00000014728)	HBS1L (ENSSHAG00000013509)	ALDH8A1 (ENSSHAG00000013316)	SGK1 (ENSSHAG00000008160)	SLC2A12 (ENSSHAG00000006070)	TBPL1 (ENSSHAG00000005937)	TCF21 (ENSSHAG00000004870)	EYA4 (ENSSHAG00000012982)	ENSSHAG00000008905	SLC18B1 (ENSSHAG00000008484)	ENSSHAG00000008045
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000028179	PXDC1 (ENSMODG00000008942)	SLC22A23 (ENSMODG00000008782)	PSMG4 (ENSMODG00000038283)	TUBB2A (ENSMODG00000024592)	BPHL (ENSMODG00000008512)	RIPK1 (ENSMODG00000008505)	ENSMODG00000008493	ENSMODG00000046608	DUSP22 (ENSMODG00000050834)	IRF4 (ENSMODG00000008383)	EXOC2 (ENSMODG00000008367)	ENSMODG00000008316	FOXF2 (ENSMODG00000008307)	ENSMODG00000008294	ENSMODG00000024590 ##22	GMDS (ENSMODG00000008260)	ENSMODG00000028941	WRNIP1 (ENSMODG00000008193)	ENSMODG00000047146	PSKH2 (ENSMODG00000008159)	ATP6V0D2 (ENSMODG00000008153)	WWP1 (ENSMODG00000008132)	RMDN1 (ENSMODG00000008100)	CPNE3 (ENSMODG00000008067)	CNGB3 (ENSMODG00000008010)	ENSMODG00000029240	ENSMODG00000043497	MMP16 (ENSMODG00000007939)	RIPK2 (ENSMODG00000007716)	ENSMODG00000007706
Opossum	MODERN SPECIES		ENSMODG00000005445	DSTN (ENSMODG00000005428)	BFSP1 (ENSMODG00000005413)	PCSK2 (ENSMODG00000005404)	OTOR (ENSMODG00000005398)	SNRPB2 (ENSMODG00000005392)	ENSMODG00000005375	ENSMODG00000046291	FLRT3 (ENSMODG00000005288)	ENSMODG00000005277	SEL1L2 (ENSMODG00000005222)	ENSMODG00000005203	ENSMODG00000005209	NDUFAF5 (ENSMODG00000005082)	ESF1 (ENSMODG00000005066)	ENSMODG00000005052 ##22	ENSMODG00000038816 #22	TASP1 (ENSMODG00000005044)	ENSMODG00000023134	ISM1 (ENSMODG00000005022)	SPTLC3 (ENSMODG00000005015)	BTBD3 (ENSMODG00000004924)	ENSMODG00000047165	JAG1 (ENSMODG00000004910)	MKKS (ENSMODG00000004860)	SNAP25 (ENSMODG00000004799)	ANKEF1 (ENSMODG00000004764)	ENSMODG00000049357	ENSMODG00000041990	PAK5 (ENSMODG00000004734)	LAMP5 (ENSMODG00000004711)
Opossum	MODERN SPECIES	1	SMIM28 (ENSMODG00000038389)	ARFGEF3 (ENSMODG00000017409)	ENSMODG00000023304	PERP (ENSMODG00000017414)	TNFAIP3 (ENSMODG00000017417)	ENSMODG00000039603	ENSMODG00000000021	ENSMODG00000017421	ENSMODG00000017426	IL20RA (ENSMODG00000017429)	SLC35D3 (ENSMODG00000017431)	PEX7 (ENSMODG00000017434)	MAP3K5 (ENSMODG00000017436)	ENSMODG00000050331	MAP7 (ENSMODG00000049358) ##21	ENSMODG00000017447 ##22	ENSMODG00000017453	PDE7B (ENSMODG00000017463)	AHI1 (ENSMODG00000017476)	MYB (ENSMODG00000017488)	ENSMODG00000038655	ENSMODG00000017499	ALDH8A1 (ENSMODG00000017504)	SGK1 (ENSMODG00000017509)	SLC2A12 (ENSMODG00000017512)	TBPL1 (ENSMODG00000017515)	TCF21 (ENSMODG00000017516)	RPS12 (ENSMODG00000017520)	SLC18B1 (ENSMODG00000017522)	ENSMODG00000023115	ENSMODG00000017525
Eutheria	ANCESTRAL SPECIES	9	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Primates	ANCESTRAL SPECIES	5	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES	5	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Hominoidea	ANCESTRAL SPECIES	4	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Hominidae	ANCESTRAL SPECIES	5	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Orangutan	MODERN SPECIES	19	HEBP2 (ENSPPYG00000038470)	SMIM28 (ENSPPYG00000036885)	ENSPPYG00000033081	ENSPPYG00000017045	ARFGEF3 (ENSPPYG00000017044)	PERP (ENSPPYG00000017043)	TNFAIP3 (ENSPPYG00000017042)	OLIG3 (ENSPPYG00000017041)	IFNGR1 (ENSPPYG00000017039)	IL22RA2 (ENSPPYG00000017038)	IL20RA (ENSPPYG00000017037)	SLC35D3 (ENSPPYG00000017036)	PEX7 (ENSPPYG00000017035)	MAP3K5 (ENSPPYG00000017034)	MAP7 (ENSPPYG00000017033) ##21	BCLAF1 (ENSPPYG00000017032) ##22	MTFR2 (ENSPPYG00000017031)	ENSPPYG00000033561	PDE7B (ENSPPYG00000017030)	AHI1 (ENSPPYG00000017029)	MYB (ENSPPYG00000017028)	HBS1L (ENSPPYG00000017027)	ALDH8A1 (ENSPPYG00000017026)	SGK1 (ENSPPYG00000017025)	SLC2A12 (ENSPPYG00000017024)	TBPL1 (ENSPPYG00000017023)	TCF21 (ENSPPYG00000017022)	EYA4 (ENSPPYG00000017021)	ENSPPYG00000017020	SLC18B1 (ENSPPYG00000017019)	VNN2 (ENSPPYG00000017018)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Gorilla	MODERN SPECIES	19	ARFGEF3 (ENSGGOG00000002348)	PERP (ENSGGOG00000038896)	TNFAIP3 (ENSGGOG00000003334)	ENSGGOG00000022605	ENSGGOG00000024367	OLIG3 (ENSGGOG00000001516)	IFNGR1 (ENSGGOG00000008510)	IL22RA2 (ENSGGOG00000010283)	IL20RA (ENSGGOG00000000380)	ENSGGOG00000042378	SLC35D3 (ENSGGOG00000010995)	PEX7 (ENSGGOG00000002773)	MAP3K5 (ENSGGOG00000015494)	ENSGGOG00000040634	MAP7 (ENSGGOG00000000974) ##21	BCLAF1 (ENSGGOG00000001824) ##22	MTFR2 (ENSGGOG00000009002)	PDE7B (ENSGGOG00000014471)	AHI1 (ENSGGOG00000001202)	MYB (ENSGGOG00000001379)	ENSGGOG00000034956	ALDH8A1 (ENSGGOG00000015693)	ENSGGOG00000013861	SGK1 (ENSGGOG00000001495)	SLC2A12 (ENSGGOG00000013187)	TBPL1 (ENSGGOG00000028298)	TCF21 (ENSGGOG00000005460)	EYA4 (ENSGGOG00000013499)	ENSGGOG00000012234	SLC18B1 (ENSGGOG00000007215)	VNN2 (ENSGGOG00000010332)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Human	MODERN SPECIES	18	NHSL1 (ENSG00000135540)	HEBP2 (ENSG00000051620)	SMIM28 (ENSG00000262543)	PBOV1 (ENSG00000254440)	ARFGEF3 (ENSG00000112379)	PERP (ENSG00000112378)	TNFAIP3 (ENSG00000118503)	OLIG3 (ENSG00000177468)	IFNGR1 (ENSG00000027697)	IL22RA2 (ENSG00000164485)	IL20RA (ENSG00000016402)	SLC35D3 (ENSG00000182747)	PEX7 (ENSG00000112357)	MAP3K5 (ENSG00000197442)	MAP7 (ENSG00000135525) ##21	BCLAF1 (ENSG00000029363) ##22	MTFR2 (ENSG00000146410)	PDE7B (ENSG00000171408)	AHI1 (ENSG00000135541)	MYB (ENSG00000118513)	HBS1L (ENSG00000112339)	ALDH8A1 (ENSG00000118514)	SGK1 (ENSG00000118515)	SLC2A12 (ENSG00000146411)	ENSG00000288529	TBPL1 (ENSG00000028839)	TCF21 (ENSG00000118526)	EYA4 (ENSG00000112319)	RPS12 (ENSG00000112306)	SLC18B1 (ENSG00000146409)	VNN2 (ENSG00000112303)
Pan	ANCESTRAL SPECIES	5	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00390000006408	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Bonobo	MODERN SPECIES	19	ENSPPAG00000007696	ARFGEF3 (ENSPPAG00000036773)	PERP (ENSPPAG00000039047)	TNFAIP3 (ENSPPAG00000034373)	ENSPPAG00000035158	ENSPPAG00000043546	OLIG3 (ENSPPAG00000020831)	IFNGR1 (ENSPPAG00000032456)	IL22RA2 (ENSPPAG00000042425)	IL20RA (ENSPPAG00000027630)	ENSPPAG00000025437	SLC35D3 (ENSPPAG00000030162)	PEX7 (ENSPPAG00000029707)	MAP3K5 (ENSPPAG00000040503)	ENSPPAG00000027909 ##21	BCLAF1 (ENSPPAG00000031645) ##22	MTFR2 (ENSPPAG00000040848)	PDE7B (ENSPPAG00000036569)	AHI1 (ENSPPAG00000032074)	MYB (ENSPPAG00000031909)	HBS1L (ENSPPAG00000029900)	ALDH8A1 (ENSPPAG00000029690)	ENSPPAG00000036170	SGK1 (ENSPPAG00000042387)	SLC2A12 (ENSPPAG00000030981)	TBPL1 (ENSPPAG00000018633)	TCF21 (ENSPPAG00000043261)	EYA4 (ENSPPAG00000027539)	RPS12 (ENSPPAG00000043270)	SLC18B1 (ENSPPAG00000041802)	VNN2 (ENSPPAG00000029457)
Chimpanzee	MODERN SPECIES	19	ARFGEF3 (ENSPTRG00000018647)	PERP (ENSPTRG00000050751)	TNFAIP3 (ENSPTRG00000018644)	ENSPTRG00000047083	ENSPTRG00000044157	OLIG3 (ENSPTRG00000018643)	IFNGR1 (ENSPTRG00000018642)	IL22RA2 (ENSPTRG00000018641)	IL20RA (ENSPTRG00000018640)	ENSPTRG00000047595	SLC35D3 (ENSPTRG00000018639)	PEX7 (ENSPTRG00000018638)	MAP3K5 (ENSPTRG00000024326)	ENSPTRG00000049539	MAP7 (ENSPTRG00000018636) ##21	BCLAF1 (ENSPTRG00000018635) ##22	MTFR2 (ENSPTRG00000018634)	PDE7B (ENSPTRG00000018633)	AHI1 (ENSPTRG00000018632)	MYB (ENSPTRG00000018631)	HBS1L (ENSPTRG00000018630)	ALDH8A1 (ENSPTRG00000018629)	ENSPTRG00000052017	SGK1 (ENSPTRG00000018626)	SLC2A12 (ENSPTRG00000018625)	TBPL1 (ENSPTRG00000018624)	TCF21 (ENSPTRG00000018622)	EYA4 (ENSPTRG00000018619)	RPS12 (ENSPTRG00000018618)	SLC18B1 (ENSPTRG00000018616)	VNN2 (ENSPTRG00000018615)
Gibbon	MODERN SPECIES	18	SMIM28 (ENSNLEG00000030167)	ARFGEF3 (ENSNLEG00000014937)	PERP (ENSNLEG00000027370)	TNFAIP3 (ENSNLEG00000014913)	ENSNLEG00000035766	ENSNLEG00000030456	OLIG3 (ENSNLEG00000019305)	IFNGR1 (ENSNLEG00000035902)	IL22RA2 (ENSNLEG00000014887)	IL20RA (ENSNLEG00000014884)	ENSNLEG00000027846	SLC35D3 (ENSNLEG00000014882)	PEX7 (ENSNLEG00000014868)	MAP3K5 (ENSNLEG00000014849)	MAP7 (ENSNLEG00000014807) ##21	BCLAF1 (ENSNLEG00000014796) ##22	MTFR2 (ENSNLEG00000014793)	PDE7B (ENSNLEG00000014787)	AHI1 (ENSNLEG00000014767)	MYB (ENSNLEG00000014751)	HBS1L (ENSNLEG00000014721)	ALDH8A1 (ENSNLEG00000014713)	ENSNLEG00000032917	ENSNLEG00000033209	SGK1 (ENSNLEG00000014679)	SLC2A12 (ENSNLEG00000014667)	TBPL1 (ENSNLEG00000014649)	TCF21 (ENSNLEG00000031050)	EYA4 (ENSNLEG00000014613)	ENSNLEG00000014611	SLC18B1 (ENSNLEG00000014588)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Vervet Monkey	MODERN SPECIES	4	NHSL1 (ENSCSAG00000017011)	HEBP2 (ENSCSAG00000017008)	SMIM28 (ENSCSAG00000017006)	ARFGEF3 (ENSCSAG00000016997)	PERP (ENSCSAG00000016948)	TNFAIP3 (ENSCSAG00000016944)	ENSCSAG00000016938	OLIG3 (ENSCSAG00000000185)	IFNGR1 (ENSCSAG00000016936)	IL22RA2 (ENSCSAG00000016931)	IL20RA (ENSCSAG00000016925)	SLC35D3 (ENSCSAG00000016900)	PEX7 (ENSCSAG00000016896)	MAP3K5 (ENSCSAG00000016892)	MAP7 (ENSCSAG00000016880) ##21	BCLAF1 (ENSCSAG00000016867) ##22	MTFR2 (ENSCSAG00000016854)	PDE7B (ENSCSAG00000016849)	AHI1 (ENSCSAG00000016829)	ENSCSAG00000016818	MYB (ENSCSAG00000016815)	HBS1L (ENSCSAG00000016791)	ALDH8A1 (ENSCSAG00000016740)	ENSCSAG00000016735	SGK1 (ENSCSAG00000016730)	SLC2A12 (ENSCSAG00000016714)	TBPL1 (ENSCSAG00000016709)	TCF21 (ENSCSAG00000016705)	EYA4 (ENSCSAG00000016701)	ENSCSAG00000016696	SLC18B1 (ENSCSAG00000016693)
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Macaca	ANCESTRAL SPECIES	9	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Pig-tailed macaque	MODERN SPECIES	342	PBOV1 (ENSMNEG00000032976)	ARFGEF3 (ENSMNEG00000037585)	PERP (ENSMNEG00000038554)	TNFAIP3 (ENSMNEG00000036248)	ENSMNEG00000037249	ENSMNEG00000042980	OLIG3 (ENSMNEG00000019943)	IFNGR1 (ENSMNEG00000042601)	IL22RA2 (ENSMNEG00000032299)	IL20RA (ENSMNEG00000042534)	ENSMNEG00000038998	SLC35D3 (ENSMNEG00000023233)	PEX7 (ENSMNEG00000043251)	MAP3K5 (ENSMNEG00000043079)	MAP7 (ENSMNEG00000042032) ##21	BCLAF1 (ENSMNEG00000035970) ##22	MTFR2 (ENSMNEG00000039364)	PDE7B (ENSMNEG00000040328)	AHI1 (ENSMNEG00000010215)	MYB (ENSMNEG00000042074)	HBS1L (ENSMNEG00000043942)	ALDH8A1 (ENSMNEG00000044833)	ENSMNEG00000041599	SGK1 (ENSMNEG00000031699)	SLC2A12 (ENSMNEG00000040633)	TBPL1 (ENSMNEG00000027053)	TCF21 (ENSMNEG00000008781)	EYA4 (ENSMNEG00000045456)	ENSMNEG00000040181	SLC18B1 (ENSMNEG00000034054)	VNN2 (ENSMNEG00000035056)
Macaca_a	ANCESTRAL SPECIES	9	ENSGT01000000215435	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT01100000263539.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000063857	ENSMFAG00000047571	TNFAIP3 (ENSMFAG00000000326)	ENSMFAG00000039282	ENSMFAG00000051130	OLIG3 (ENSMFAG00000027435)	ENSMFAG00000054860	IFNGR1 (ENSMFAG00000003984)	IL22RA2 (ENSMFAG00000030047)	ENSMFAG00000053800	IL20RA (ENSMFAG00000030911)	SLC35D3 (ENSMFAG00000036990)	PEX7 (ENSMFAG00000036835)	MAP3K5 (ENSMFAG00000040944)	MAP7 (ENSMFAG00000042781) ##21	BCLAF1 (ENSMFAG00000039754) ##22	MTFR2 (ENSMFAG00000038742)	PDE7B (ENSMFAG00000032923)	ENSMFAG00000065391	ENSMFAG00000007648	AHI1 (ENSMFAG00000033411)	MYB (ENSMFAG00000036535)	HBS1L (ENSMFAG00000003766)	ALDH8A1 (ENSMFAG00000037548)	ENSMFAG00000055793	SGK1 (ENSMFAG00000037310)	SLC2A12 (ENSMFAG00000002658)	TBPL1 (ENSMFAG00000040137)	TCF21 (ENSMFAG00000060473)	EYA4 (ENSMFAG00000037522)	ENSMFAG00000042652
Rhesus	MODERN SPECIES	14	NHSL1 (ENSMMUG00000000123)	HEBP2 (ENSMMUG00000000122)	SMIM28 (ENSMMUG00000059337)	ARFGEF3 (ENSMMUG00000019927)	PERP (ENSMMUG00000049387)	TNFAIP3 (ENSMMUG00000008869)	OLIG3 (ENSMMUG00000047350)	IFNGR1 (ENSMMUG00000062426)	IL22RA2 (ENSMMUG00000013562)	ENSMMUG00000062792	IL20RA (ENSMMUG00000013566)	SLC35D3 (ENSMMUG00000055984)	PEX7 (ENSMMUG00000016382)	MAP3K5 (ENSMMUG00000016376)	MAP7 (ENSMMUG00000016373) ##21	BCLAF1 (ENSMMUG00000003710) ##22	MTFR2 (ENSMMUG00000003709)	PDE7B (ENSMMUG00000003708)	ENSMMUG00000053328	ENSMMUG00000044284	AHI1 (ENSMMUG00000009368)	MYB (ENSMMUG00000018166)	HBS1L (ENSMMUG00000004802)	ENSMMUG00000061139	ENSMMUG00000053927	SGK1 (ENSMMUG00000008140)	ENSMMUG00000061787	SLC2A12 (ENSMMUG00000022921)	TBPL1 (ENSMMUG00000022920)	TCF21 (ENSMMUG00000064455)	EYA4 (ENSMMUG00000005745)
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Olive baboon	MODERN SPECIES	16	ENSPANG00000031978	ARFGEF3 (ENSPANG00000013002)	PERP (ENSPANG00000006095)	TNFAIP3 (ENSPANG00000007076)	OLIG3 (ENSPANG00000006465)	IFNGR1 (ENSPANG00000018173)	IL22RA2 (ENSPANG00000000356)	ENSPANG00000039384	IL20RA (ENSPANG00000017634)	ENSPANG00000033937	SLC35D3 (ENSPANG00000005133)	PEX7 (ENSPANG00000023965)	MAP3K5 (ENSPANG00000015068)	MAP7 (ENSPANG00000016952) ##21	ENSPANG00000047396	BCLAF1 (ENSPANG00000022182) ##22	MTFR2 (ENSPANG00000014438)	PDE7B (ENSPANG00000015851)	AHI1 (ENSPANG00000008061)	ENSPANG00000033626	MYB (ENSPANG00000018932)	HBS1L (ENSPANG00000007075)	ALDH8A1 (ENSPANG00000022180)	ENSPANG00000047724	SGK1 (ENSPANG00000010260)	SLC2A12 (ENSPANG00000022519)	TBPL1 (ENSPANG00000020089)	ENSPANG00000041421	TCF21 (ENSPANG00000037480)	ENSPANG00000040940	ENSPANG00000050946
Cercopithecinae_d	ANCESTRAL SPECIES	73	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Sooty mangabey	MODERN SPECIES	324	SMIM28 (ENSCATG00000044781)	ARFGEF3 (ENSCATG00000039507)	ENSCATG00000042163	TNFAIP3 (ENSCATG00000041434)	ENSCATG00000044693	ENSCATG00000041894	OLIG3 (ENSCATG00000015711)	IFNGR1 (ENSCATG00000037440)	IL22RA2 (ENSCATG00000031043)	IL20RA (ENSCATG00000037479)	ENSCATG00000043504	SLC35D3 (ENSCATG00000029391)	PEX7 (ENSCATG00000030986)	MAP3K5 (ENSCATG00000017514)	MAP7 (ENSCATG00000041354) ##21	BCLAF1 (ENSCATG00000018862) ##22	MTFR2 (ENSCATG00000029871)	PDE7B (ENSCATG00000039515)	AHI1 (ENSCATG00000017191)	ENSCATG00000039064	MYB (ENSCATG00000029830)	HBS1L (ENSCATG00000043042)	ALDH8A1 (ENSCATG00000045306)	ENSCATG00000043694	SGK1 (ENSCATG00000044319)	SLC2A12 (ENSCATG00000010423)	TBPL1 (ENSCATG00000045200)	TCF21 (ENSCATG00000037198)	EYA4 (ENSCATG00000043182)	ENSCATG00000036985	SLC18B1 (ENSCATG00000035898)
Drill	MODERN SPECIES	733	HEBP2 (ENSMLEG00000038686)	SMIM28 (ENSMLEG00000030662)	ARFGEF3 (ENSMLEG00000030098)	PERP (ENSMLEG00000038902)	TNFAIP3 (ENSMLEG00000024974)	ENSMLEG00000038362	ENSMLEG00000032539	IFNGR1 (ENSMLEG00000029276)	IL22RA2 (ENSMLEG00000034712)	IL20RA (ENSMLEG00000036693)	ENSMLEG00000029751	SLC35D3 (ENSMLEG00000041255)	PEX7 (ENSMLEG00000030496)	MAP3K5 (ENSMLEG00000044142)	MAP7 (ENSMLEG00000041309) ##21	BCLAF1 (ENSMLEG00000029438) ##22	MTFR2 (ENSMLEG00000025670)	PDE7B (ENSMLEG00000038045)
Rhinopithecus	ANCESTRAL SPECIES	92	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000154900.e.d.b	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b.c ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Black snub-nosed monkey	MODERN SPECIES	2496															ENSRBIG00000032034 ##21	BCLAF1 (ENSRBIG00000029072) ##22	MTFR2 (ENSRBIG00000028360)
Golden snub-nosed monkey	MODERN SPECIES	2152	PERP (ENSRROG00000034877)	TNFAIP3 (ENSRROG00000041571)	ENSRROG00000041456	ENSRROG00000041568	ENSRROG00000036262	OLIG3 (ENSRROG00000019602)	IFNGR1 (ENSRROG00000035100)	IL22RA2 (ENSRROG00000002783)	IL20RA (ENSRROG00000007730)	ENSRROG00000038139	SLC35D3 (ENSRROG00000035626)	PEX7 (ENSRROG00000036829)	MAP3K5 (ENSRROG00000031252)	ENSRROG00000013913	MAP7 (ENSRROG00000017668) ##21	BCLAF1 (ENSRROG00000040259) ##22	MTFR2 (ENSRROG00000034463)	PDE7B (ENSRROG00000044535)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00950000183163.a.b.d ##22
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00390000018878	ENSGT00950000183152.A.q.b	ENSGT00940000157873	ENSGT00390000004950.k.b	ENSGT00530000063749.c.b	ENSGT00530000066436	ENSGT00940000159623	ENSGT00390000016521	ENSGT00940000165306	ENSGT00940000159243	ENSGT00940000160006	ENSGT00530000063881.a.b	ENSGT00940000153662.B	ENSGT00910000147489	ENSGT00390000012541	ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003	ENSGT00910000147408	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000160670	ENSGT00390000009409.eb.a	ENSGT00940000156369	ENSGT01080000257410.D.d
Hominidae	ANCESTRAL SPECIES	7	ENSGT00530000063974.b	ENSGT00390000018878	ENSGT00950000183152.A.q.b	ENSGT00940000157873	ENSGT00390000004950.k.b	ENSGT00530000063749.c.b	ENSGT00530000066436	ENSGT00940000159623	ENSGT00390000016521	ENSGT00940000165306	ENSGT00940000159243	ENSGT00940000160006	ENSGT00940000153662.B	ENSGT00910000147489	ENSGT00390000012541	ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003	ENSGT00910000147408	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000160670	ENSGT00390000009409.eb.a	ENSGT00940000156369	ENSGT01080000257410.D.d
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00390000018878	ENSGT00950000183152.A.q.b	ENSGT00940000157873	ENSGT00390000004950.k.b	ENSGT00530000063749.c.b	ENSGT00530000066436	ENSGT00940000159623	ENSGT00390000016521.a.b	ENSGT00940000165306	ENSGT00390000016521.b	ENSGT00940000159243	ENSGT00940000160006	ENSGT00940000153662.B	ENSGT00910000147489	ENSGT00390000012541	ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003	ENSGT00910000147408	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000160670	ENSGT00390000009409.eb.a	ENSGT00940000156369	ENSGT01080000257410.D.d
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00390000018878	ENSGT00950000183152.A.q.b	ENSGT00940000157873	ENSGT00390000004950.k.b	ENSGT00530000063749.c.b	ENSGT00530000066436	ENSGT00940000159623	ENSGT00390000016521.a.b	ENSGT00940000165306	ENSGT00390000016521.b	ENSGT00940000159243	ENSGT00940000160006	ENSGT00940000153662.B	ENSGT00910000147489	ENSGT00390000012541	ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003	ENSGT00910000147408	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT00940000154997	ENSGT00940000156973	ENSGT00940000157299	ENSGT00940000157592	ENSGT00390000005782	ENSGT00390000009048.a.b	ENSGT00940000160670	ENSGT00390000009409.eb.a	ENSGT00940000156369	ENSGT01080000257410.D.d
Pan	ANCESTRAL SPECIES	10	ENSGT00530000063974.b	ENSGT00390000018878	ENSGT00950000183152.A.q.b	ENSGT00940000157873	ENSGT00390000004950.k.b	ENSGT00530000063749.c.b	ENSGT00530000066436	ENSGT00940000159623	ENSGT00390000016521.a.b	ENSGT00940000165306	ENSGT00940000159243	ENSGT00940000160006	ENSGT00940000153662.B	ENSGT00910000147489	ENSGT00390000012541	ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003	ENSGT00910000147408	ENSGT00910000148622	ENSGT01030000234638.b.b.c.b	ENSGT00940000154585.a	ENSGT01090000260070.A	ENSGT00940000154997	ENSGT00940000156973	ENSGT00940000156053	ENSGT00390000002886.b.a	ENSGT00910000148876	ENSGT00910000147181	ENSGT00910000147336	ENSGT00940000156222.b
Bonobo	MODERN SPECIES	18	DCP2 (ENSPPAG00000042108)	ENSPPAG00000008683	ENSPPAG00000026840	SRP19 (ENSPPAG00000037062)	APC (ENSPPAG00000032467)	EPB41L4A (ENSPPAG00000040652)	ENSPPAG00000042559	ENSPPAG00000039695	ENSPPAG00000031387	STARD4 (ENSPPAG00000039524)	CAMK4 (ENSPPAG00000041231)	ENSPPAG00000029092	WDR36 (ENSPPAG00000023560)	ENSPPAG00000043068	TSLP (ENSPPAG00000037495)	ENSPPAG00000029536 ##22	SLC25A46 (ENSPPAG00000042617)	TMEM232 (ENSPPAG00000039615)	ENSPPAG00000001922	ENSPPAG00000036482	MAN2A1 (ENSPPAG00000037961)	PJA2 (ENSPPAG00000039234)	ENSPPAG00000035716	ENSPPAG00000043941	FER (ENSPPAG00000039597)	ENSPPAG00000035591	ENSPPAG00000028652	ENSPPAG00000029397	EFNA5 (ENSPPAG00000014646)	ENSPPAG00000030911	NUDT12 (ENSPPAG00000036756)
Chimpanzee	MODERN SPECIES	18	ENSPTRG00000017138	REEP5 (ENSPTRG00000017137)	SRP19 (ENSPTRG00000017136)	ENSPTRG00000049857	APC (ENSPTRG00000017135)	ENSPTRG00000046651	EPB41L4A (ENSPTRG00000017133)	ENSPTRG00000050776	NREP (ENSPTRG00000017131)	STARD4 (ENSPTRG00000047777)	CAMK4 (ENSPTRG00000017129)	ENSPTRG00000046092	WDR36 (ENSPTRG00000017128)	ENSPTRG00000044276	TSLP (ENSPTRG00000043950)	ENSPTRG00000049886 ##22	SLC25A46 (ENSPTRG00000017126)	TMEM232 (ENSPTRG00000017123)	ENSPTRG00000046139	ENSPTRG00000042761	MAN2A1 (ENSPTRG00000017122)	PJA2 (ENSPTRG00000022820)	ENSPTRG00000051898	FER (ENSPTRG00000017117)	ENSPTRG00000052594	FBXL17 (ENSPTRG00000017116)	ENSPTRG00000051006	EFNA5 (ENSPTRG00000017115)	ENSPTRG00000043710	ENSPTRG00000034210	NUDT12 (ENSPTRG00000017114)
Gorilla	MODERN SPECIES	18	YTHDC2 (ENSGGOG00000014407)	MCC (ENSGGOG00000001631)	DCP2 (ENSGGOG00000014412)	REEP5 (ENSGGOG00000037456)	ENSGGOG00000027482	ENSGGOG00000038397	APC (ENSGGOG00000005972)	EPB41L4A (ENSGGOG00000011203)	ENSGGOG00000036761	ENSGGOG00000003725	STARD4 (ENSGGOG00000040002)	CAMK4 (ENSGGOG00000007589)	RPS3A (ENSGGOG00000002161)	WDR36 (ENSGGOG00000026914)	TSLP (ENSGGOG00000038272)	ENSGGOG00000042018 ##22	SLC25A46 (ENSGGOG00000024980)	TMEM232 (ENSGGOG00000005241)	MAN2A1 (ENSGGOG00000001547)	ENSGGOG00000010526	FER (ENSGGOG00000010028)	FBXL17 (ENSGGOG00000015039)	ENSGGOG00000042159	EFNA5 (ENSGGOG00000000371)	ENSGGOG00000027503	NUDT12 (ENSGGOG00000023955)	MACIR (ENSGGOG00000040406)	PPIP5K2 (ENSGGOG00000012250)	GIN1 (ENSGGOG00000023118)	EIF3K (ENSGGOG00000027517)	PAM (ENSGGOG00000009306)
Gibbon	MODERN SPECIES	11	MCC (ENSNLEG00000011620)	DCP2 (ENSNLEG00000011594)	ENSNLEG00000018892	REEP5 (ENSNLEG00000011580)	ENSNLEG00000030884	ENSNLEG00000030508	APC (ENSNLEG00000011525)	EPB41L4A (ENSNLEG00000011488)	ENSNLEG00000032195	NREP (ENSNLEG00000011484)	ENSNLEG00000011481	CAMK4 (ENSNLEG00000011447)	ENSNLEG00000035847	WDR36 (ENSNLEG00000011395)	TSLP (ENSNLEG00000032786)	ENSNLEG00000028319 ##22	SLC25A46 (ENSNLEG00000031651)	ENSNLEG00000011340	MAN2A1 (ENSNLEG00000011279)	PJA2 (ENSNLEG00000011252)	ENSNLEG00000033440	FER (ENSNLEG00000011211)	ENSNLEG00000033017	EFNA5 (ENSNLEG00000011201)	ENSNLEG00000032142	NUDT12 (ENSNLEG00000011194)	MACIR (ENSNLEG00000011188)	PPIP5K2 (ENSNLEG00000011109)	GIN1 (ENSNLEG00000011091)	PAM (ENSNLEG00000010933)	SLCO6A1 (ENSNLEG00000010892)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00950000183163.a.b.d ##22
Rhinopithecus	ANCESTRAL SPECIES	817																ENSGT00950000183163.a.b.d ##22	ENSGT00390000015874	ENSGT00390000014003
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	940															ENSRBIG00000044847 ##22	ENSRBIG00000007991 ##22	SLC25A46 (ENSRBIG00000032334)	TMEM232 (ENSRBIG00000027602)
Black snub-nosed monkey	MODERN SPECIES	940																ENSRBIG00000044847 ##22	ENSRBIG00000007991 ##22	SLC25A46 (ENSRBIG00000032334)	TMEM232 (ENSRBIG00000027602)
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Cebidae	ANCESTRAL SPECIES	5	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00390000014722.d	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Capuchin	MODERN SPECIES	65	HEBP2 (ENSCCAG00000022742)	SMIM28 (ENSCCAG00000022535)	ARFGEF3 (ENSCCAG00000022363)	PERP (ENSCCAG00000024325)	TNFAIP3 (ENSCCAG00000026453)	ENSCCAG00000022443	OLIG3 (ENSCCAG00000032329)	IFNGR1 (ENSCCAG00000028495)	IL22RA2 (ENSCCAG00000028239)	IL20RA (ENSCCAG00000028945)	ENSCCAG00000024812	SLC35D3 (ENSCCAG00000034349)	PEX7 (ENSCCAG00000037288)	MAP3K5 (ENSCCAG00000019841)	MAP7 (ENSCCAG00000021966) ##21	BCLAF1 (ENSCCAG00000032457) ##22	MTFR2 (ENSCCAG00000027036)	PDE7B (ENSCCAG00000036216)
Bolivian squirrel monkey	MODERN SPECIES	91										IL20RA (ENSSBOG00000030873)	SLC35D3 (ENSSBOG00000028578)	PEX7 (ENSSBOG00000029138)	MAP3K5 (ENSSBOG00000031833)	MAP7 (ENSSBOG00000035407) ##21	ENSSBOG00000000077	BCLAF1 (ENSSBOG00000033973) ##22	MTFR2 (ENSSBOG00000019957)	PDE7B (ENSSBOG00000027341)	AHI1 (ENSSBOG00000035373)	MYB (ENSSBOG00000028999)	ENSSBOG00000033605	ENSSBOG00000019696	ALDH8A1 (ENSSBOG00000003193)	SGK1 (ENSSBOG00000033468)	SLC2A12 (ENSSBOG00000023577)	TBPL1 (ENSSBOG00000022803)	TCF21 (ENSSBOG00000034676)	ENSSBOG00000024565	EYA4 (ENSSBOG00000029920)	ENSSBOG00000023133	SLC18B1 (ENSSBOG00000030940)
Marmoset	MODERN SPECIES	16	TNFAIP3 (ENSCJAG00000019019)	OLIG3 (ENSCJAG00000019011)	ENSCJAG00000085578	ENSCJAG00000084731	ENSCJAG00000076925	IFNGR1 (ENSCJAG00000069510)	IL22RA2 (ENSCJAG00000018991)	IL20RA (ENSCJAG00000018982)	ENSCJAG00000078995	SLC35D3 (ENSCJAG00000008524)	PEX7 (ENSCJAG00000008514)	ENSCJAG00000078792	MAP3K5 (ENSCJAG00000008383)	MAP7 (ENSCJAG00000008294) ##21	ENSCJAG00000071860	BCLAF1 (ENSCJAG00000008200) ##22	MTFR2 (ENSCJAG00000008189)	PDE7B (ENSCJAG00000008164)	ENSCJAG00000070725	ENSCJAG00000074971	AHI1 (ENSCJAG00000008068)	ENSCJAG00000071466	MYB (ENSCJAG00000007798)	ENSCJAG00000080967	HBS1L (ENSCJAG00000007678)	ALDH8A1 (ENSCJAG00000007652)	ENSCJAG00000082917	SGK1 (ENSCJAG00000002727)	SLC2A12 (ENSCJAG00000038249)	TBPL1 (ENSCJAG00000002794)	TCF21 (ENSCJAG00000058563)
Mas night monkey	MODERN SPECIES	506	HEBP2 (ENSANAG00000030822)	SMIM28 (ENSANAG00000033494)	ARFGEF3 (ENSANAG00000034514)	ENSANAG00000019730	PERP (ENSANAG00000036824)	TNFAIP3 (ENSANAG00000029324)	ENSANAG00000000023	OLIG3 (ENSANAG00000019677)	IFNGR1 (ENSANAG00000022563)	IL22RA2 (ENSANAG00000034970)	IL20RA (ENSANAG00000032920)	SLC35D3 (ENSANAG00000021760)	PEX7 (ENSANAG00000022204)	MAP3K5 (ENSANAG00000037690)	MAP7 (ENSANAG00000022874) ##21	BCLAF1 (ENSANAG00000035003) ##22	MTFR2 (ENSANAG00000023880)	PDE7B (ENSANAG00000033089)	AHI1 (ENSANAG00000028946)	MYB (ENSANAG00000026941)	ENSANAG00000030478	HBS1L (ENSANAG00000038076)	ALDH8A1 (ENSANAG00000026843)	SGK1 (ENSANAG00000036955)	SLC2A12 (ENSANAG00000026241)	TBPL1 (ENSANAG00000033371)	TCF21 (ENSANAG00000021568)	EYA4 (ENSANAG00000023112)	RPS12 (ENSANAG00000030986)	SLC18B1 (ENSANAG00000026852)	ENSANAG00000024271
Tarsier	MODERN SPECIES	3511														MAP3K5 (ENSTSYG00000000613)	MAP7 (ENSTSYG00000003705) ##21	BCLAF1 (ENSTSYG00000008161) ##22	ENSTSYG00000035157	PDE7B (ENSTSYG00000004970)
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Greater bamboo lemur	MODERN SPECIES	1107															MAP7 (ENSPSMG00000012847) ##21	BCLAF1 (ENSPSMG00000012569) ##22	MTFR2 (ENSPSMG00000012407)	PDE7B (ENSPSMG00000012399)	AHI1 (ENSPSMG00000012348)	MYB (ENSPSMG00000011509)	HBS1L (ENSPSMG00000010745)	ALDH8A1 (ENSPSMG00000010552)	ENSPSMG00000010526	ENSPSMG00000010518	ENSPSMG00000010511	SGK1 (ENSPSMG00000010165)	SLC2A12 (ENSPSMG00000009995)	TBPL1 (ENSPSMG00000009985)	TCF21 (ENSPSMG00000009967)	ENSPSMG00000009962	EYA4 (ENSPSMG00000009715)
Coquerels sifaka	MODERN SPECIES	1046								OLIG3 (ENSPCOG00000005063)	IFNGR1 (ENSPCOG00000001037)	IL22RA2 (ENSPCOG00000016305)	IL20RA (ENSPCOG00000028358)	SLC35D3 (ENSPCOG00000021808)	ENSPCOG00000027911	MAP3K5 (ENSPCOG00000019678)	MAP7 (ENSPCOG00000024639) ##21	BCLAF1 (ENSPCOG00000014683) ##22	MTFR2 (ENSPCOG00000004724)	PDE7B (ENSPCOG00000027152)	ENSPCOG00000018117	MYB (ENSPCOG00000018217)	ENSPCOG00000020390	ALDH8A1 (ENSPCOG00000028699)	ENSPCOG00000000608	ENSPCOG00000006925	SGK1 (ENSPCOG00000021583)	SLC2A12 (ENSPCOG00000024120)	TBPL1 (ENSPCOG00000015682)	TCF21 (ENSPCOG00000028439)	EYA4 (ENSPCOG00000019086)	ENSPCOG00000018473	SLC18B1 (ENSPCOG00000024834)
Mouse lemur	MODERN SPECIES	28	NHSL1 (ENSMICG00000014027)	HEBP2 (ENSMICG00000032428)	SMIM28 (ENSMICG00000046075)	ARFGEF3 (ENSMICG00000013986)	PERP (ENSMICG00000047745)	TNFAIP3 (ENSMICG00000013965)	ENSMICG00000041427	ENSMICG00000027650	ENSMICG00000044585	IL22RA2 (ENSMICG00000004960)	IL20RA (ENSMICG00000004953)	SLC35D3 (ENSMICG00000046861)	PEX7 (ENSMICG00000004938)	MAP3K5 (ENSMICG00000004915)	MAP7 (ENSMICG00000004905) ##21	BCLAF1 (ENSMICG00000004946) ##22	MTFR2 (ENSMICG00000004940)	PDE7B (ENSMICG00000032302)	AHI1 (ENSMICG00000005541)	MYB (ENSMICG00000005531)	ENSMICG00000001533	ALDH8A1 (ENSMICG00000001527)	SGK1 (ENSMICG00000007886)	SLC2A12 (ENSMICG00000026712)	TBPL1 (ENSMICG00000015740)	TCF21 (ENSMICG00000029994)	EYA4 (ENSMICG00000007846)	RPS12 (ENSMICG00000043038)	SLC18B1 (ENSMICG00000037158)	VNN2 (ENSMICG00000005236)	VNN1 (ENSMICG00000005229)
Bushbaby	MODERN SPECIES	157	NHSL1 (ENSOGAG00000026919)	HEBP2 (ENSOGAG00000005010)	ARFGEF3 (ENSOGAG00000016978)	PERP (ENSOGAG00000011669)	TNFAIP3 (ENSOGAG00000011667)	OLIG3 (ENSOGAG00000011977)	ENSOGAG00000032882	IFNGR1 (ENSOGAG00000006564)	IL22RA2 (ENSOGAG00000006556)	IL20RA (ENSOGAG00000006549)	SLC35D3 (ENSOGAG00000006548)	PEX7 (ENSOGAG00000000560)	ENSOGAG00000030613	MAP3K5 (ENSOGAG00000000556)	MAP7 (ENSOGAG00000009726) ##21	BCLAF1 (ENSOGAG00000009724) ##22	MTFR2 (ENSOGAG00000009721)	ENSOGAG00000025397	ENSOGAG00000024127	PDE7B (ENSOGAG00000009717)	ENSOGAG00000030360	AHI1 (ENSOGAG00000011323)	MYB (ENSOGAG00000000056)	HBS1L (ENSOGAG00000012604)	ALDH8A1 (ENSOGAG00000012602)	ENSOGAG00000028801	ENSOGAG00000029912	SGK1 (ENSOGAG00000008732)	SLC2A12 (ENSOGAG00000034406)	TBPL1 (ENSOGAG00000006622)	TCF21 (ENSOGAG00000034073)
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Glires	ANCESTRAL SPECIES	5	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Rodentia	ANCESTRAL SPECIES	6	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	16	TNFAIP3 (ENSSVLG00005020456)	OLIG3 (ENSSVLG00005020760)	IFNGR1 (ENSSVLG00005020792)	IL22RA2 (ENSSVLG00005020977)	IL20RA (ENSSVLG00005021081)	SLC35D3 (ENSSVLG00005021290)	PEX7 (ENSSVLG00005006033)	MAP3K5 (ENSSVLG00005006091)	ENSSVLG00005006276 ##21	ENSSVLG00005006372 ##21	ENSSVLG00005006470	ENSSVLG00005006489	ENSSVLG00005006502	ENSSVLG00005006526	ENSSVLG00005006545	ENSSVLG00005006663 ##22	ENSSVLG00005006924	PDE7B (ENSSVLG00005007033)	AHI1 (ENSSVLG00005007162)	MYB (ENSSVLG00005007375)	ENSSVLG00005007995	ENSSVLG00005008038	ALDH8A1 (ENSSVLG00005008086)	ENSSVLG00005008214	SGK1 (ENSSVLG00005008322)	SLC2A12 (ENSSVLG00005008629)	TBPL1 (ENSSVLG00005008655)	TCF21 (ENSSVLG00005008705)	ENSSVLG00005008727	EYA4 (ENSSVLG00005009017)	ENSSVLG00005010015
Eurasian red squirrel	MODERN SPECIES	16																ENSSVLG00005009137 ##22	PDCD2 (ENSSVLG00005009277)	ENSSVLG00005009367	ENSSVLG00005009399	ENSSVLG00005009441	DLL1 (ENSSVLG00005009464)	ENSSVLG00005009518	ENSSVLG00005009783	DYNLT2 (ENSSVLG00005009825)	ENSSVLG00005009866	PHF10 (ENSSVLG00005009963)	ENSSVLG00005010029	WDR27 (ENSSVLG00005010073)	ENSSVLG00005010185	THBS2 (ENSSVLG00005008075)	SMOC2 (ENSSVLG00005008335)
Marmotini	ANCESTRAL SPECIES	11	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000163252.d	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Marmotini_b	ANCESTRAL SPECIES	59	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000163252.d	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Arctic ground squirrel	MODERN SPECIES	94	CCDC28A (ENSUPAG00010003313)	ENSUPAG00010003303	NHSL1 (ENSUPAG00010003289)	HEBP2 (ENSUPAG00010003272)	ARFGEF3 (ENSUPAG00010003182)	PERP (ENSUPAG00010003162)	TNFAIP3 (ENSUPAG00010003126)	OLIG3 (ENSUPAG00010003123)	IFNGR1 (ENSUPAG00010003115)	IL22RA2 (ENSUPAG00010003105)	IL20RA (ENSUPAG00010003082)	SLC35D3 (ENSUPAG00010003080)	PEX7 (ENSUPAG00010003051)	MAP3K5 (ENSUPAG00010002902)	MAP7 (ENSUPAG00010002836) ##21	BCLAF1 (ENSUPAG00010002788) ##22	MTFR2 (ENSUPAG00010002758)	ENSUPAG00010002749	PDE7B (ENSUPAG00010002707)	AHI1 (ENSUPAG00010002656)	MYB (ENSUPAG00010002637)	ENSUPAG00010002482	ENSUPAG00010002240	SLC2A12 (ENSUPAG00010002225)	TBPL1 (ENSUPAG00010002221)	ENSUPAG00010002212
Squirrel	MODERN SPECIES	160	ECT2L (ENSSTOG00000027129)	CCDC28A (ENSSTOG00000021039)	NHSL1 (ENSSTOG00000002362)	HEBP2 (ENSSTOG00000020811)	ARFGEF3 (ENSSTOG00000028835)	PERP (ENSSTOG00000024446)	TNFAIP3 (ENSSTOG00000007860)	OLIG3 (ENSSTOG00000020214)	IFNGR1 (ENSSTOG00000023671)	IL22RA2 (ENSSTOG00000012313)	IL20RA (ENSSTOG00000016256)	SLC35D3 (ENSSTOG00000025129)	PEX7 (ENSSTOG00000025283)	MAP3K5 (ENSSTOG00000009007)	MAP7 (ENSSTOG00000008977) ##21	BCLAF1 (ENSSTOG00000013977) ##22	MTFR2 (ENSSTOG00000013967)	ENSSTOG00000021413	PDE7B (ENSSTOG00000020095)	AHI1 (ENSSTOG00000007607)	MYB (ENSSTOG00000007581)	HBS1L (ENSSTOG00000007551)	ALDH8A1 (ENSSTOG00000007535)	SGK1 (ENSSTOG00000028424)	SLC2A12 (ENSSTOG00000027759)	TBPL1 (ENSSTOG00000006786)	TCF21 (ENSSTOG00000023733)	EYA4 (ENSSTOG00000005069)	ENSSTOG00000031770	SLC18B1 (ENSSTOG00000009373)	ENSSTOG00000009354
Alpin marmot	MODERN SPECIES	2	REPS1 (ENSMMMG00000000445)	ECT2L (ENSMMMG00000000082)	CCDC28A (ENSMMMG00000000049)	NHSL1 (ENSMMMG00000000011)	HEBP2 (ENSMMMG00000019485)	ARFGEF3 (ENSMMMG00000019413)	PERP (ENSMMMG00000019402)	TNFAIP3 (ENSMMMG00000019379)	OLIG3 (ENSMMMG00000019365)	IFNGR1 (ENSMMMG00000019328)	IL22RA2 (ENSMMMG00000019318)	IL20RA (ENSMMMG00000019314)	PEX7 (ENSMMMG00000019290)	MAP3K5 (ENSMMMG00000019235)	MAP7 (ENSMMMG00000019204) ##21	BCLAF1 (ENSMMMG00000019134) ##22	MTFR2 (ENSMMMG00000019120)	ENSMMMG00000019117	PDE7B (ENSMMMG00000019089)	AHI1 (ENSMMMG00000019073)	MYB (ENSMMMG00000019066)	HBS1L (ENSMMMG00000019006)	ALDH8A1 (ENSMMMG00000019004)	ENSMMMG00000018939	SGK1 (ENSMMMG00000018673)	SLC2A12 (ENSMMMG00000018652)	TBPL1 (ENSMMMG00000018642)	TCF21 (ENSMMMG00000018609)	EYA4 (ENSMMMG00000018511)	ENSMMMG00000018382	SLC18B1 (ENSMMMG00000018367)
Hystricomorpha	ANCESTRAL SPECIES	39	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b.i	ENSGT00940000160610
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b.i	ENSGT00940000160610
Degu	DUPLICATION
Degu	MODERN SPECIES	65	HEBP2 (ENSODEG00000007586)	ENSODEG00000009708	ARFGEF3 (ENSODEG00000008382)	ENSODEG00000008459	TNFAIP3 (ENSODEG00000008925)	ENSODEG00000019565	OLIG3 (ENSODEG00000019534)	ENSODEG00000019506	ENSODEG00000008408	IL22RA2 (ENSODEG00000007775)	IL20RA (ENSODEG00000006756)	SLC35D3 (ENSODEG00000006620)	ENSODEG00000008240	ENSODEG00000008040	MAP7 (ENSODEG00000008448) ##21	ENSODEG00000006806 ##22	MTFR2 (ENSODEG00000006976)	PDE7B (ENSODEG00000007023)	ENSODEG00000007137	ENSODEG00000006953	ENSODEG00000019597	ENSODEG00000008684	HBS1L (ENSODEG00000008959)	ALDH8A1 (ENSODEG00000007514)	ENSODEG00000006585	SLC2A12 (ENSODEG00000007816)	ENSODEG00000006582	TCF21 (ENSODEG00000007820)	ENSODEG00000019436	FNDC1 (ENSODEG00000007591)	ENSODEG00000009689
Degu	MODERN SPECIES	411																ENSODEG00000000384 ##22
Long-tailed chinchilla	MODERN SPECIES	146											SLC35D3 (ENSCLAG00000003234)	PEX7 (ENSCLAG00000003272)	MAP3K5 (ENSCLAG00000007503)	ENSCLAG00000012716	ENSCLAG00000003926 ##21	BCLAF1 (ENSCLAG00000004401) ##22	MTFR2 (ENSCLAG00000005292)	PDE7B (ENSCLAG00000007039)	AHI1 (ENSCLAG00000003003)	MYB (ENSCLAG00000005675)	HBS1L (ENSCLAG00000004937)	ALDH8A1 (ENSCLAG00000005380)	SGK1 (ENSCLAG00000006128)	SLC2A12 (ENSCLAG00000002848)	TBPL1 (ENSCLAG00000003071)	TCF21 (ENSCLAG00000003324)	ENSCLAG00000006768	FNDC1 (ENSCLAG00000007668)	TAGAP (ENSCLAG00000002626)	RSPH3 (ENSCLAG00000002659)	ENSCLAG00000002792
Guinea pig	MODERN SPECIES	41								OLIG3 (ENSCPOG00000007516)	IFNGR1 (ENSCPOG00000012963)	IL22RA2 (ENSCPOG00000025110)	IL20RA (ENSCPOG00000037107)	SLC35D3 (ENSCPOG00000010798)	PEX7 (ENSCPOG00000007704)	MAP3K5 (ENSCPOG00000004244)	MAP7 (ENSCPOG00000004237) ##21	BCLAF1 (ENSCPOG00000008088) ##22	MTFR2 (ENSCPOG00000008084)	PDE7B (ENSCPOG00000035879)	ENSCPOG00000030097	MYB (ENSCPOG00000014607)	HBS1L (ENSCPOG00000007015)	ALDH8A1 (ENSCPOG00000007012)	SGK1 (ENSCPOG00000001494)	SLC2A12 (ENSCPOG00000001493)	TBPL1 (ENSCPOG00000011899)	TCF21 (ENSCPOG00000024201)	FNDC1 (ENSCPOG00000006443)	TAGAP (ENSCPOG00000006603)	RSPH3 (ENSCPOG00000014634)	EZR (ENSCPOG00000004306)	SYTL3 (ENSCPOG00000004299)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000034232	PERP (ENSHGLG00000017932)	ENSHGLG00000037648	ENSHGLG00000005679	OLIG3 (ENSHGLG00000020086)	ENSHGLG00000047576	IL22RA2 (ENSHGLG00000001748)	ENSHGLG00000036039	IL20RA (ENSHGLG00000002408)	ENSHGLG00000038313	SLC35D3 (ENSHGLG00000000195)	PEX7 (ENSHGLG00000000229)	ENSHGLG00000035518	MAP3K5 (ENSHGLG00000000842)	MAP7 (ENSHGLG00000000995) ##21	BCLAF1 (ENSHGLG00000001879) ##22	ENSHGLG00000000549	PDE7B (ENSHGLG00000048791)	ENSHGLG00000002954	AHI1 (ENSHGLG00000003261)	MYB (ENSHGLG00000000878)	HBS1L (ENSHGLG00000000516)	ALDH8A1 (ENSHGLG00000000876)	SGK1 (ENSHGLG00000000909)	ENSHGLG00000019010	SLC2A12 (ENSHGLG00000000953)	ENSHGLG00000046831	TCF21 (ENSHGLG00000035092)	ENSHGLG00000040407	ENSHGLG00000032159	ENSHGLG00000003172
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00390000018318.u.b.b
Prairie vole	MODERN SPECIES	354	Ccdc28a (ENSMOCG00000015425)	Nhsl1 (ENSMOCG00000021012)	Hebp2 (ENSMOCG00000011108)	Arfgef3 (ENSMOCG00000009174)	Perp (ENSMOCG00000012264)	Tnfaip3 (ENSMOCG00000006328)	Olig3 (ENSMOCG00000001779)	ENSMOCG00000018866	Ifngr1 (ENSMOCG00000003677)	Il22ra2 (ENSMOCG00000006128)	Il20ra (ENSMOCG00000022279)	Slc35d3 (ENSMOCG00000018328)	Pex7 (ENSMOCG00000016916)	Map3k5 (ENSMOCG00000019021)	Map7 (ENSMOCG00000010774) ##21	Bclaf1 (ENSMOCG00000005885) ##22	Mtfr2 (ENSMOCG00000004425)	ENSMOCG00000006744	Pde7b (ENSMOCG00000018081)	Ahi1 (ENSMOCG00000019913)	ENSMOCG00000016189	ENSMOCG00000014988	ENSMOCG00000020414	Hbs1l (ENSMOCG00000023038)	Aldh8a1 (ENSMOCG00000013932)	1700020N01Rik (ENSMOCG00000017055)	Sgk1 (ENSMOCG00000008011)	Slc2a12 (ENSMOCG00000001440)	Tbpl1 (ENSMOCG00000022781)	Tcf21 (ENSMOCG00000016422)	Eya4 (ENSMOCG00000021008)
Northern American deer mouse	MODERN SPECIES	8	Naxd (ENSPEMG00000020061)	Rab20 (ENSPEMG00000026156)	Col4a2 (ENSPEMG00000016638)	Col4a1 (ENSPEMG00000019749)	Irs2 (ENSPEMG00000019911)	Myo16 (ENSPEMG00000000246)	Tnfsf13b (ENSPEMG00000017940)	Abhd13 (ENSPEMG00000012812)	Lig4 (ENSPEMG00000000076)	Nalf1 (ENSPEMG00000000217)	ENSPEMG00000027339	ENSPEMG00000029880	ENSPEMG00000019958	Efnb2 (ENSPEMG00000029267)	ENSPEMG00000019589	ENSPEMG00000012755 ##22	ENSPEMG00000027030	Slc10a2 (ENSPEMG00000015438)	Shcbp1 (ENSPEMG00000018747)	ENSPEMG00000028468	ENSPEMG00000030231	ENSPEMG00000000392
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Ccdc28a (ENSCGRG00001018901)	Nhsl1 (ENSCGRG00001021948)	Hebp2 (ENSCGRG00001020023)	Arfgef3 (ENSCGRG00001019486)	Gm4922 (ENSCGRG00001006023)	Perp (ENSCGRG00001020200)	Tnfaip3 (ENSCGRG00001019749)	Olig3 (ENSCGRG00001006525)	Ifngr1 (ENSCGRG00001021869)	Il22ra2 (ENSCGRG00001020957)	Il20ra (ENSCGRG00001020064)	Slc35d3 (ENSCGRG00001006411)	PEX7 (ENSCGRG00001004544)	Map3k5 (ENSCGRG00001009680)	Map7 (ENSCGRG00001024812) ##21	ENSCGRG00001024620 ##22	Mtfr2 (ENSCGRG00001024312)	Pde7b (ENSCGRG00001021298)	Ahi1 (ENSCGRG00001019676)	Myb (ENSCGRG00001018869)	Hbs1l (ENSCGRG00001024531)	Aldh8a1 (ENSCGRG00001023246)	1700020N01Rik (ENSCGRG00001006553)	Sgk1 (ENSCGRG00001022228)	ENSCGRG00001005727	Lin28b (ENSCGRG00001024078)	Bves (ENSCGRG00001023624)	Popdc3 (ENSCGRG00001024360)	Prep (ENSCGRG00001023843)	Prdm1 (ENSCGRG00001023291)	Atg5 (ENSCGRG00001022743)
Chinese hamster chok1gshd	MODERN SPECIES	2	Arl4a (ENSCGRG00001004637)	Scin (ENSCGRG00001000973)	Lsmem1 (ENSCGRG00001024872)	ENSCGRG00001023478	Ifrd1 (ENSCGRG00001023172)	Zfp277 (ENSCGRG00001022696)	Dock4 (ENSCGRG00001024824)	Lrrn3 (ENSCGRG00001010451)	Immp2l (ENSCGRG00001013717)	ENSCGRG00001009365	DNAJB9 (ENSCGRG00001006614)	Pnpla8 (ENSCGRG00001002943)	Nrcam (ENSCGRG00001023691)	ENSCGRG00001015987	Stxbp6 (ENSCGRG00001016560)	ENSCGRG00001015898 ##22	Nova1 (ENSCGRG00001024030)	ENSCGRG00001023108	Foxg1 (ENSCGRG00001009864)	Prkd1 (ENSCGRG00001019739)	G2e3 (ENSCGRG00001015112)	Scfd1 (ENSCGRG00001013495)	Coch (ENSCGRG00001010363)	Strn3 (ENSCGRG00001000550)	Ap4s1 (ENSCGRG00001023362)	Hectd1 (ENSCGRG00001024884)	ENSCGRG00001024436	Heatr5a (ENSCGRG00001017067)	Dtd2 (ENSCGRG00001015902)	Gpr33 (ENSCGRG00001011244)	ENSCGRG00001006641
Chinese hamster chok1gshd	MODERN SPECIES	2	Ralgapa1 (ENSCGRG00001024774)	ENSCGRG00001024105	Brms1l (ENSCGRG00001022168)	Mbip (ENSCGRG00001020947)	ENSCGRG00001014830	Nkx2-1 (ENSCGRG00001014035)	Nkx2-9 (ENSCGRG00001021293)	Pax9 (ENSCGRG00001020784)	Slc25a21 (ENSCGRG00001013187)	Mipol1 (ENSCGRG00001010153)	Foxa1 (ENSCGRG00001007733)	ENSCGRG00001006180	Ttc6 (ENSCGRG00001002787)	Sstr1 (ENSCGRG00001011700)	Clec14a (ENSCGRG00001008667)	ENSCGRG00001003851 ##22	ENSCGRG00001002230	Sec23a (ENSCGRG00001019639)	Gemin2 (ENSCGRG00001017720)	Trappc6b (ENSCGRG00001016994)	Pnn (ENSCGRG00001015998)	ENSCGRG00001015024	ENSCGRG00001001417	Fbxo33 (ENSCGRG00001023018)	ENSCGRG00001021012	ENSCGRG00001013073	ENSCGRG00001010233	Lrfn5 (ENSCGRG00001012425)	ENSCGRG00001010478	ENSCGRG00001009504	ENSCGRG00001011106
Golden Hamster	MODERN SPECIES	621	Reps1 (ENSMAUG00000021612)	Ect2l (ENSMAUG00000010748)	Ccdc28a (ENSMAUG00000012356)	Nhsl1 (ENSMAUG00000017101)	Hebp2 (ENSMAUG00000022054)	Arfgef3 (ENSMAUG00000015376)	Perp (ENSMAUG00000020965)	Tnfaip3 (ENSMAUG00000019454)	Olig3 (ENSMAUG00000007734)	Ifngr1 (ENSMAUG00000004899)	Il22ra2 (ENSMAUG00000009499)	Il20ra (ENSMAUG00000009539)	Slc35d3 (ENSMAUG00000019497)	Pex7 (ENSMAUG00000011551)	Map3k5 (ENSMAUG00000017994)	Bclaf1 (ENSMAUG00000020380) ##22	Mtfr2 (ENSMAUG00000020722)	Pde7b (ENSMAUG00000015483)	Ahi1 (ENSMAUG00000009566)	Myb (ENSMAUG00000009411)	Hbs1l (ENSMAUG00000001077)	Aldh8a1 (ENSMAUG00000013904)	1700020N01Rik (ENSMAUG00000021945)	Sgk1 (ENSMAUG00000009469)	Slc2a12 (ENSMAUG00000008238)	Tbpl1 (ENSMAUG00000003205)	Tcf21 (ENSMAUG00000020633)	Eya4 (ENSMAUG00000020805)	ENSMAUG00000016653	Slc18b1 (ENSMAUG00000021274)	Taar1 (ENSMAUG00000007196)
Murinae	ANCESTRAL SPECIES	30	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT01050000248461	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a.b
Mus	ANCESTRAL SPECIES	15	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00900000143307	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a.b
Mus_A	ANCESTRAL SPECIES	11	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00900000143307	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a.b
Mus_B	ANCESTRAL SPECIES	10	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00900000143307	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a.b
Mouse	MODERN SPECIES	1	Ccdc28a (ENSMUSG00000059554)	Nhsl1 (ENSMUSG00000039835)	Hebp2 (ENSMUSG00000019853)	Arfgef3 (ENSMUSG00000019852)	Gm4922 (ENSMUSG00000044624)	Perp (ENSMUSG00000019851)	Tnfaip3 (ENSMUSG00000019850)	Olig3 (ENSMUSG00000045591)	Ifngr1 (ENSMUSG00000020009)	Il22ra2 (ENSMUSG00000039760)	Il20ra (ENSMUSG00000020007)	Slc35d3 (ENSMUSG00000050473)	Pex7 (ENSMUSG00000020003)	Map3k5 (ENSMUSG00000071369)	Map7 (ENSMUSG00000019996) ##21	Bclaf1 (ENSMUSG00000037608) ##22	Mtfr2 (ENSMUSG00000019992)	Pde7b (ENSMUSG00000019990)	Ahi1 (ENSMUSG00000019986)	Myb (ENSMUSG00000019982)	Hbs1l (ENSMUSG00000019977)	Aldh8a1 (ENSMUSG00000037542)	1700020N01Rik (ENSMUSG00000050844)	Sgk1 (ENSMUSG00000019970)	Semp2l2b (ENSMUSG00000069712)	Raet1e (ENSMUSG00000053219)	H60b (ENSMUSG00000075297)	Raet1d (ENSMUSG00000078452)	Slc2a12 (ENSMUSG00000037490)	Tbpl1 (ENSMUSG00000071359)	Gm56675 (ENSMUSG00000118528)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00900000143307	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a.b	ENSGT00940000156674
Steppe mouse	MODERN SPECIES	3417	Nhsl1 (ENSMSIG00000029059)	Hebp2 (ENSMSIG00000029046)	Arfgef3 (ENSMSIG00000029021)	Gm4922 (ENSMSIG00000029018)	Perp (ENSMSIG00000029013)	Tnfaip3 (ENSMSIG00000029003)	Olig3 (ENSMSIG00000028998)	Ifngr1 (ENSMSIG00000028993)	Il22ra2 (ENSMSIG00000028990)	Il20ra (ENSMSIG00000028984)	Slc35d3 (ENSMSIG00000028978)	Pex7 (ENSMSIG00000028956)	Map3k5 (ENSMSIG00000028883)	Map7 (ENSMSIG00000028825) ##21	ENSMSIG00000028821	Bclaf1 (ENSMSIG00000028794) ##22
spretus	MODERN SPECIES	1	Hebp2 (MGP_SPRETEiJ_G0015950)	Arfgef3 (MGP_SPRETEiJ_G0015951)	Gm4922 (MGP_SPRETEiJ_G0015952)	Perp (MGP_SPRETEiJ_G0015953)	Tnfaip3 (MGP_SPRETEiJ_G0015954)	Olig3 (MGP_SPRETEiJ_G0015955)	MGP_SPRETEiJ_G0015956	Il22ra2 (MGP_SPRETEiJ_G0015957)	MGP_SPRETEiJ_G0015958	Il20ra (MGP_SPRETEiJ_G0015959)	Slc35d3 (MGP_SPRETEiJ_G0015960)	Pex7 (MGP_SPRETEiJ_G0015961)	Map3k5 (MGP_SPRETEiJ_G0015962)	Map7 (MGP_SPRETEiJ_G0015963) ##21	MGP_SPRETEiJ_G0015964	Bclaf1 (MGP_SPRETEiJ_G0015965) ##22	MGP_SPRETEiJ_G0015966	Pde7b (MGP_SPRETEiJ_G0015967)	MGP_SPRETEiJ_G0015968	Myb (MGP_SPRETEiJ_G0015969)	Hbs1l (MGP_SPRETEiJ_G0015970)	MGP_SPRETEiJ_G0015971	Aldh8a1 (MGP_SPRETEiJ_G0015972)	1700020N01Rik (MGP_SPRETEiJ_G0015973)	Sgk1 (MGP_SPRETEiJ_G0015974)	Slc2a12 (MGP_SPRETEiJ_G0015975)	Tbpl1 (MGP_SPRETEiJ_G0015976)	Tcf21 (MGP_SPRETEiJ_G0015977)	Eya4 (MGP_SPRETEiJ_G0015979)	MGP_SPRETEiJ_G0015980	Slc18b1 (MGP_SPRETEiJ_G0015981)
Ryukyu mouse	MODERN SPECIES	1	Hebp2 (MGP_CAROLIEiJ_G0015142)	Arfgef3 (MGP_CAROLIEiJ_G0015143)	Gm4922 (MGP_CAROLIEiJ_G0015144)	Perp (MGP_CAROLIEiJ_G0015145)	Tnfaip3 (MGP_CAROLIEiJ_G0015146)	Olig3 (MGP_CAROLIEiJ_G0015147)	Ifngr1 (MGP_CAROLIEiJ_G0015148)	Il22ra2 (MGP_CAROLIEiJ_G0015149)	MGP_CAROLIEiJ_G0015150	Il20ra (MGP_CAROLIEiJ_G0015151)	Slc35d3 (MGP_CAROLIEiJ_G0015152)	Pex7 (MGP_CAROLIEiJ_G0015153)	Map3k5 (MGP_CAROLIEiJ_G0015154)	Map7 (MGP_CAROLIEiJ_G0015155) ##21	MGP_CAROLIEiJ_G0015156	Bclaf1 (MGP_CAROLIEiJ_G0015157) ##22	Mtfr2 (MGP_CAROLIEiJ_G0015158)	Pde7b (MGP_CAROLIEiJ_G0015159)	Ahi1 (MGP_CAROLIEiJ_G0015160)	Myb (MGP_CAROLIEiJ_G0015161)	Hbs1l (MGP_CAROLIEiJ_G0015162)	MGP_CAROLIEiJ_G0015163	Aldh8a1 (MGP_CAROLIEiJ_G0015164)	1700020N01Rik (MGP_CAROLIEiJ_G0015165)	Sgk1 (MGP_CAROLIEiJ_G0015166)	Slc2a12 (MGP_CAROLIEiJ_G0015167)	Tbpl1 (MGP_CAROLIEiJ_G0015168)	Tcf21 (MGP_CAROLIEiJ_G0015169)	Eya4 (MGP_CAROLIEiJ_G0015170)	Rps12 (MGP_CAROLIEiJ_G0015171)	Slc18b1 (MGP_CAROLIEiJ_G0015172)
Shrew mouse	MODERN SPECIES	13	Arfgef3 (MGP_PahariEiJ_G0023762)	Gm4922 (MGP_PahariEiJ_G0023763)	Perp (MGP_PahariEiJ_G0023764)	Tnfaip3 (MGP_PahariEiJ_G0023765)	MGP_PahariEiJ_G0023766	Olig3 (MGP_PahariEiJ_G0023767)	Ifngr1 (MGP_PahariEiJ_G0023768)	Il22ra2 (MGP_PahariEiJ_G0023769)	MGP_PahariEiJ_G0023770	Il20ra (MGP_PahariEiJ_G0023771)	Slc35d3 (MGP_PahariEiJ_G0023772)	Pex7 (MGP_PahariEiJ_G0023773)	Map3k5 (MGP_PahariEiJ_G0023774)	Map7 (MGP_PahariEiJ_G0023775) ##21	MGP_PahariEiJ_G0023776	MGP_PahariEiJ_G0023777 ##22	Mtfr2 (MGP_PahariEiJ_G0023778)	Pde7b (MGP_PahariEiJ_G0023779)	Ahi1 (MGP_PahariEiJ_G0023780)	Myb (MGP_PahariEiJ_G0023781)	Hbs1l (MGP_PahariEiJ_G0023782)	MGP_PahariEiJ_G0023783	Aldh8a1 (MGP_PahariEiJ_G0023784)	1700020N01Rik (MGP_PahariEiJ_G0023785)	Sgk1 (MGP_PahariEiJ_G0023786)	Slc2a12 (MGP_PahariEiJ_G0023787)	Tbpl1 (MGP_PahariEiJ_G0023788)	Tcf21 (MGP_PahariEiJ_G0023789)	Eya4 (MGP_PahariEiJ_G0023790)	MGP_PahariEiJ_G0023791	Slc18b1 (MGP_PahariEiJ_G0023792)
Rat	MODERN SPECIES		Arfgef3 (ENSRNOG00000011460)	RGD1560303 (ENSRNOG00000025799)	Perp (ENSRNOG00000011994)	Tnfaip3 (ENSRNOG00000049517)	Olig3 (ENSRNOG00000064127)	ENSRNOG00000064148	Ifngr1 (ENSRNOG00000012074)	Il22ra2 (ENSRNOG00000012259)	Il20ra (ENSRNOG00000012286)	Slc35d3 (ENSRNOG00000012311)	Pex7 (ENSRNOG00000012322)	RGD1562402 (ENSRNOG00000040273)	Map3k5 (ENSRNOG00000031700)	Map7 (ENSRNOG00000012701) ##21	ENSRNOG00000068973	Mtfr2 (ENSRNOG00000058050) ##22	Pde7b (ENSRNOG00000013436)	Ahi1 (ENSRNOG00000013969)	Myb (ENSRNOG00000055858)	Hbs1l (ENSRNOG00000014531)	Aldh8a1 (ENSRNOG00000014907)	Themis (ENSRNOG00000014979)	ENSRNOG00000062873	Ptprk (ENSRNOG00000047605)	ENSRNOG00000069014	Lama2 (ENSRNOG00000011134)	AABR07000583.1 (ENSRNOG00000046438)	Arhgap18 (ENSRNOG00000011245)	LOC120097699 (ENSRNOG00000063903)	AABR07004232.1 (ENSRNOG00000048904)	L3mbtl3 (ENSRNOG00000011720)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1789	Nhsl1 (ENSNGAG00000019810)	ENSNGAG00000000988	Hebp2 (ENSNGAG00000003578)	Arfgef3 (ENSNGAG00000010293)	Perp (ENSNGAG00000017566)	ENSNGAG00000018978	Olig3 (ENSNGAG00000018786)	Ifngr1 (ENSNGAG00000010028)	Il22ra2 (ENSNGAG00000000838)	ENSNGAG00000012948	Il20ra (ENSNGAG00000005056)	Slc35d3 (ENSNGAG00000015318)	Pex7 (ENSNGAG00000018527)	Map3k5 (ENSNGAG00000000561)	Map7 (ENSNGAG00000019743) ##21	Bclaf1 (ENSNGAG00000016813) ##22	Mtfr2 (ENSNGAG00000001241)	Pde7b (ENSNGAG00000010650)	Ahi1 (ENSNGAG00000017747)	Myb (ENSNGAG00000006199)	Hbs1l (ENSNGAG00000015184)	Aldh8a1 (ENSNGAG00000009983)	Sgk1 (ENSNGAG00000017569)	Slc2a12 (ENSNGAG00000015437)	Tbpl1 (ENSNGAG00000002735)	Tcf21 (ENSNGAG00000010530)	Eya4 (ENSNGAG00000014955)	ENSNGAG00000008061	ENSNGAG00000017824	Slc18b1 (ENSNGAG00000001177)	Vnn1 (ENSNGAG00000000525)
Lesser Egyptian jerboa	MODERN SPECIES	44	Reps1 (ENSJJAG00000020855)	Ect2l (ENSJJAG00000016035)	ENSJJAG00000021466	Nhsl1 (ENSJJAG00000008856)	Hebp2 (ENSJJAG00000009933)	Arfgef3 (ENSJJAG00000008415)	Perp (ENSJJAG00000021130)	ENSJJAG00000020726	Olig3 (ENSJJAG00000001512)	Il22ra2 (ENSJJAG00000007140)	Il20ra (ENSJJAG00000019171)	Slc35d3 (ENSJJAG00000014674)	Pex7 (ENSJJAG00000016195)	ENSJJAG00000012639	Map7 (ENSJJAG00000023344) ##21	Bclaf1 (ENSJJAG00000011803) ##22	Pde7b (ENSJJAG00000001518)	Ahi1 (ENSJJAG00000010372)	Myb (ENSJJAG00000023989)	ENSJJAG00000017024	Aldh8a1 (ENSJJAG00000014136)	ENSJJAG00000009072	Sgk1 (ENSJJAG00000003911)	Slc2a12 (ENSJJAG00000003595)	ENSJJAG00000007350	Tcf21 (ENSJJAG00000010513)	Eya4 (ENSJJAG00000012851)	ENSJJAG00000006059	ENSJJAG00000004347	Slc18b1 (ENSJJAG00000012667)	Vnn3 (ENSJJAG00000013692)
Kangaroo rat	MODERN SPECIES	416	Ccdc28a (ENSDORG00000011206)	Nhsl1 (ENSDORG00000028836)	Hebp2 (ENSDORG00000008127)	Arfgef3 (ENSDORG00000000555)	Perp (ENSDORG00000026815)	ENSDORG00000002537	Olig3 (ENSDORG00000013033)	Ifngr1 (ENSDORG00000003816)	Il22ra2 (ENSDORG00000003815)	Il20ra (ENSDORG00000006038)	Slc35d3 (ENSDORG00000006037)	Pex7 (ENSDORG00000006036)	ENSDORG00000001559	Map7 (ENSDORG00000011587) ##21	ENSDORG00000026911	Bclaf1 (ENSDORG00000015144) ##22	Mtfr2 (ENSDORG00000011726)	Pde7b (ENSDORG00000011723)	Ahi1 (ENSDORG00000005963)	Myb (ENSDORG00000005960)	Hbs1l (ENSDORG00000005958)	Aldh8a1 (ENSDORG00000012210)	Sgk1 (ENSDORG00000006576)	Slc2a12 (ENSDORG00000001098)	Tbpl1 (ENSDORG00000026809)	Tcf21 (ENSDORG00000028001)	Eya4 (ENSDORG00000009832)	ENSDORG00000016670	Slc18b1 (ENSDORG00000016669)	Vnn3 (ENSDORG00000006399)	Vnn1 (ENSDORG00000013713)
Lagomorpha	ANCESTRAL SPECIES	34	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00950000182934.a.b
Rabbit	MODERN SPECIES	3	CCDC28A (ENSOCUG00000010302)	NHSL1 (ENSOCUG00000013429)	HEBP2 (ENSOCUG00000013425)	SMIM28 (ENSOCUG00000038063)	ARFGEF3 (ENSOCUG00000004754)	ENSOCUG00000004238	TNFAIP3 (ENSOCUG00000002310)	OLIG3 (ENSOCUG00000017289)	IFNGR1 (ENSOCUG00000013254)	IL22RA2 (ENSOCUG00000022021)	IL20RA (ENSOCUG00000015696)	SLC35D3 (ENSOCUG00000005418)	PEX7 (ENSOCUG00000005413)	MAP3K5 (ENSOCUG00000015434)	MAP7 (ENSOCUG00000025456) ##21	BCLAF1 (ENSOCUG00000016363) ##22	MTFR2 (ENSOCUG00000023560)	PDE7B (ENSOCUG00000016632)	AHI1 (ENSOCUG00000011645)	MYB (ENSOCUG00000011633)	ENSOCUG00000011619	ALDH8A1 (ENSOCUG00000011613)	SGK1 (ENSOCUG00000014367)	SLC2A12 (ENSOCUG00000007095)	ENSOCUG00000007091	TCF21 (ENSOCUG00000017761)	ENSOCUG00000034819	EYA4 (ENSOCUG00000000635)	ENSOCUG00000001606	SLC18B1 (ENSOCUG00000001601)	ENSOCUG00000002119
Pika	MODERN SPECIES	201																BCLAF1 (ENSOPRG00000012771) ##22
Tree shrew	MODERN SPECIES	9045																BCLAF1 (ENSTBEG00000014886) ##22	MTFR2 (ENSTBEG00000014424)	PDE7B (ENSTBEG00000014277)
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183163.a.b ##22
Common shrew	MODERN SPECIES	1457																BCLAF1 (ENSSARG00000010591) ##22	MAP7 (ENSSARG00000010516) ##21
Hedgehog	MODERN SPECIES	2023																BCLAF1 (ENSEEUG00000008699) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Cetacea	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Beluga whale	MODERN SPECIES	80	REPS1 (ENSDLEG00000018915)	CCDC28A (ENSDLEG00000018902)	NHSL1 (ENSDLEG00000018878)	HEBP2 (ENSDLEG00000018869)	ARFGEF3 (ENSDLEG00000018824)	PERP (ENSDLEG00000018815)	TNFAIP3 (ENSDLEG00000018805)	OLIG3 (ENSDLEG00000018800)	IFNGR1 (ENSDLEG00000018795)	IL22RA2 (ENSDLEG00000018776)	IL20RA (ENSDLEG00000018765)	SLC35D3 (ENSDLEG00000018760)	PEX7 (ENSDLEG00000018737)	MAP3K5 (ENSDLEG00000018645)	MAP7 (ENSDLEG00000018586) ##21	BCLAF1 (ENSDLEG00000018552) ##22	MTFR2 (ENSDLEG00000018530)	PDE7B (ENSDLEG00000018501)	ENSDLEG00000018489	AHI1 (ENSDLEG00000018476)	MYB (ENSDLEG00000017828)	HBS1L (ENSDLEG00000017719)	ENSDLEG00000017705	ALDH8A1 (ENSDLEG00000017684)	ENSDLEG00000017675	SGK1 (ENSDLEG00000017395)	SLC2A12 (ENSDLEG00000017341)	TBPL1 (ENSDLEG00000017321)	TCF21 (ENSDLEG00000017308)	EYA4 (ENSDLEG00000017258)	ENSDLEG00000017198
Narwhal	MODERN SPECIES	301	CCDC28A (ENSMMNG00015004752)	NHSL1 (ENSMMNG00015004748)	HEBP2 (ENSMMNG00015004744)	SMIM28 (ENSMMNG00015004741)	ARFGEF3 (ENSMMNG00015004736)	PERP (ENSMMNG00015004729)	TNFAIP3 (ENSMMNG00015004725)	OLIG3 (ENSMMNG00015004722)	IFNGR1 (ENSMMNG00015004717)	IL22RA2 (ENSMMNG00015004714)	IL20RA (ENSMMNG00015004702)	SLC35D3 (ENSMMNG00015004697)	PEX7 (ENSMMNG00015004689)	MAP3K5 (ENSMMNG00015004650)	MAP7 (ENSMMNG00015004576) ##21	BCLAF1 (ENSMMNG00015004416) ##22	MTFR2 (ENSMMNG00015004365)	PDE7B (ENSMMNG00015004337)	ENSMMNG00015004316	AHI1 (ENSMMNG00015004289)	MYB (ENSMMNG00015003868)	HBS1L (ENSMMNG00015003506)	ALDH8A1 (ENSMMNG00015003422)	ENSMMNG00015003395	SGK1 (ENSMMNG00015003296)	SLC2A12 (ENSMMNG00015003231)	TBPL1 (ENSMMNG00015003201)	TCF21 (ENSMMNG00015003187)	EYA4 (ENSMMNG00015002681)	ENSMMNG00015002434	SLC18B1 (ENSMMNG00015002413)
Vaquita	MODERN SPECIES	3	ENSPSNG00000016891	NHSL1 (ENSPSNG00000016929)	HEBP2 (ENSPSNG00000017128)	SMIM28 (ENSPSNG00000017175)	ARFGEF3 (ENSPSNG00000017246)	PERP (ENSPSNG00000017580)	TNFAIP3 (ENSPSNG00000017627)	OLIG3 (ENSPSNG00000017695)	IFNGR1 (ENSPSNG00000017711)	IL22RA2 (ENSPSNG00000017736)	IL20RA (ENSPSNG00000017854)	SLC35D3 (ENSPSNG00000018001)	PEX7 (ENSPSNG00000018022)	MAP3K5 (ENSPSNG00000018088)	MAP7 (ENSPSNG00000018187) ##21	BCLAF1 (ENSPSNG00000018438) ##22	MTFR2 (ENSPSNG00000018668)	PDE7B (ENSPSNG00000018778)	AHI1 (ENSPSNG00000018997)	ENSPSNG00000019108	MYB (ENSPSNG00000019358)	HBS1L (ENSPSNG00000020502)	ALDH8A1 (ENSPSNG00000020689)	ENSPSNG00000020833	SGK1 (ENSPSNG00000020913)	SLC2A12 (ENSPSNG00000021095)	TBPL1 (ENSPSNG00000021116)	TCF21 (ENSPSNG00000021150)	EYA4 (ENSPSNG00000021358)	ENSPSNG00000021786	SLC18B1 (ENSPSNG00000004354)
Dolphin	MODERN SPECIES	1876											IL20RA (ENSTTRG00000002552)	SLC35D3 (ENSTTRG00000002550)	PEX7 (ENSTTRG00000002549)	MAP3K5 (ENSTTRG00000002547)	MAP7 (ENSTTRG00000002544) ##21	BCLAF1 (ENSTTRG00000002543) ##22	MTFR2 (ENSTTRG00000002539)	PDE7B (ENSTTRG00000002534)
Sperm whale	MODERN SPECIES	1	HEBP2 (ENSPCTG00005002499)	SMIM28 (ENSPCTG00005002515)	ARFGEF3 (ENSPCTG00005002543)	PERP (ENSPCTG00005002611)	TNFAIP3 (ENSPCTG00005002628)	ENSPCTG00005002647	OLIG3 (ENSPCTG00005002654)	ENSPCTG00005002660	IFNGR1 (ENSPCTG00005002669)	IL22RA2 (ENSPCTG00005002687)	IL20RA (ENSPCTG00005002725)	SLC35D3 (ENSPCTG00005002777)	PEX7 (ENSPCTG00005002794)	MAP3K5 (ENSPCTG00005002829)	MAP7 (ENSPCTG00005002901) ##21	BCLAF1 (ENSPCTG00005003186) ##22	MTFR2 (ENSPCTG00005003247)	PDE7B (ENSPCTG00005003278)	AHI1 (ENSPCTG00005003350)	MYB (ENSPCTG00005003582)	HBS1L (ENSPCTG00005004840)	ALDH8A1 (ENSPCTG00005005236)	ENSPCTG00005005368	SGK1 (ENSPCTG00005005434)	ENSPCTG00005005970	SLC2A12 (ENSPCTG00005005980)	TBPL1 (ENSPCTG00005006014)	TCF21 (ENSPCTG00005006049)	EYA4 (ENSPCTG00005006207)	ENSPCTG00005007873	SLC18B1 (ENSPCTG00005007922)
Blue whale	MODERN SPECIES	3	NHSL1 (ENSBMSG00010011403)	HEBP2 (ENSBMSG00010011427)	SMIM28 (ENSBMSG00010011435)	ARFGEF3 (ENSBMSG00010011454)	PERP (ENSBMSG00010012999)	ENSBMSG00010013004	TNFAIP3 (ENSBMSG00010013017)	OLIG3 (ENSBMSG00010013026)	IFNGR1 (ENSBMSG00010013033)	IL22RA2 (ENSBMSG00010013041)	IL20RA (ENSBMSG00010013064)	SLC35D3 (ENSBMSG00010013086)	PEX7 (ENSBMSG00010013106)	MAP3K5 (ENSBMSG00010013140)	MAP7 (ENSBMSG00010013240) ##21	BCLAF1 (ENSBMSG00010013436) ##22	MTFR2 (ENSBMSG00010013499)	PDE7B (ENSBMSG00010013521)	AHI1 (ENSBMSG00010013573)	MYB (ENSBMSG00010013716)	HBS1L (ENSBMSG00010015846)	ALDH8A1 (ENSBMSG00010016072)	ENSBMSG00010016201	SGK1 (ENSBMSG00010016242)	SLC2A12 (ENSBMSG00010016353)	TBPL1 (ENSBMSG00010016385)	TCF21 (ENSBMSG00010016420)	ENSBMSG00010016433	EYA4 (ENSBMSG00010016581)	RPS12 (ENSBMSG00010019087)	SLC18B1 (ENSBMSG00010019139)
Pecora	ANCESTRAL SPECIES	19	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Percora_a	ANCESTRAL SPECIES	21	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Bovidae	ANCESTRAL SPECIES	21	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Caprinae	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Goat	MODERN SPECIES	28	ECT2L (ENSCHIG00000012266)	CCDC28A (ENSCHIG00000018840)	NHSL1 (ENSCHIG00000016534)	HEBP2 (ENSCHIG00000023213)	ARFGEF3 (ENSCHIG00000026696)	PERP (ENSCHIG00000015047)	TNFAIP3 (ENSCHIG00000021461)	OLIG3 (ENSCHIG00000010551)	IFNGR1 (ENSCHIG00000013778)	IL22RA2 (ENSCHIG00000026489)	IL20RA (ENSCHIG00000016224)	SLC35D3 (ENSCHIG00000008530)	PEX7 (ENSCHIG00000011508)	MAP3K5 (ENSCHIG00000024066)	MAP7 (ENSCHIG00000008356) ##21	BCLAF1 (ENSCHIG00000000525) ##22	MTFR2 (ENSCHIG00000010590)	PDE7B (ENSCHIG00000026148)	AHI1 (ENSCHIG00000025335)	MYB (ENSCHIG00000009914)	HBS1L (ENSCHIG00000010299)	ALDH8A1 (ENSCHIG00000023305)	ENSCHIG00000003168	ENSCHIG00000007546	SGK1 (ENSCHIG00000010215)	SLC2A12 (ENSCHIG00000017082)	TBPL1 (ENSCHIG00000006206)	TCF21 (ENSCHIG00000015635)	EYA4 (ENSCHIG00000021889)	ENSCHIG00000015149	SLC18B1 (ENSCHIG00000020241)
Rambouillet Sheep	MODERN SPECIES	24	ECT2L (ENSOARG00020008354)	CCDC28A (ENSOARG00020008233)	NHSL1 (ENSOARG00020008019)	HEBP2 (ENSOARG00020007983)	SMIM28 (ENSOARG00020007936)	ARFGEF3 (ENSOARG00020007298)	PERP (ENSOARG00020007239)	TNFAIP3 (ENSOARG00020023915)	OLIG3 (ENSOARG00020023905)	IL22RA2 (ENSOARG00020023864)	IFNGR1 (ENSOARG00020023838)	SLC35D3 (ENSOARG00020023727)	PEX7 (ENSOARG00020023693)	MAP3K5 (ENSOARG00020023530)	MAP7 (ENSOARG00020022779) ##21	BCLAF1 (ENSOARG00020022544) ##22	MTFR2 (ENSOARG00020022505)	PDE7B (ENSOARG00020022379)	AHI1 (ENSOARG00020022315)	MYB (ENSOARG00020021881)	ENSOARG00020021772	ENSOARG00020021719	ENSOARG00020021449	ALDH8A1 (ENSOARG00020021383)	ENSOARG00020021323	SGK1 (ENSOARG00020020794)	SLC2A12 (ENSOARG00020020681)	TBPL1 (ENSOARG00020020634)	TCF21 (ENSOARG00020020602)	EYA4 (ENSOARG00020020157)	RPS12 (ENSOARG00020020036)
Bovinae	ANCESTRAL SPECIES	35	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Bos	ANCESTRAL SPECIES	19	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.l	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Bos_a	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Wild yak	MODERN SPECIES	1062									IFNGR1 (ENSBMUG00000012052)	IL22RA2 (ENSBMUG00000012067)	IL20RA (ENSBMUG00000012085)	SLC35D3 (ENSBMUG00000012102)	PEX7 (ENSBMUG00000012113)	MAP3K5 (ENSBMUG00000012132)	MAP7 (ENSBMUG00000012203) ##21	BCLAF1 (ENSBMUG00000012296) ##22	MTFR2 (ENSBMUG00000012345)	PDE7B (ENSBMUG00000012382)	AHI1 (ENSBMUG00000012435)	MYB (ENSBMUG00000012863)	HBS1L (ENSBMUG00000013294)	ALDH8A1 (ENSBMUG00000013397)	ENSBMUG00000013415
Domestic yak	MODERN SPECIES	1	HEBP2 (ENSBGRG00000013355)	SMIM28 (ENSBGRG00000013484)	ARFGEF3 (ENSBGRG00000013577)	ENSBGRG00000014011	ENSBGRG00000014065	TNFAIP3 (ENSBGRG00000014104)	OLIG3 (ENSBGRG00000014179)	ENSBGRG00000014200	IFNGR1 (ENSBGRG00000014225)	IL22RA2 (ENSBGRG00000014306)	IL20RA (ENSBGRG00000014447)	SLC35D3 (ENSBGRG00000014577)	PEX7 (ENSBGRG00000014624)	MAP3K5 (ENSBGRG00000014827)	MAP7 (ENSBGRG00000015070) ##21	BCLAF1 (ENSBGRG00000015909) ##22	MTFR2 (ENSBGRG00000016366)	PDE7B (ENSBGRG00000016432)	ENSBGRG00000016837	ENSBGRG00000016866	AHI1 (ENSBGRG00000016896)	ENSBGRG00000017011	MYB (ENSBGRG00000017062)	HBS1L (ENSBGRG00000017504)	ALDH8A1 (ENSBGRG00000018084)	ENSBGRG00000018439	ENSBGRG00000018453	SGK1 (ENSBGRG00000018550)	SLC2A12 (ENSBGRG00000018914)	TBPL1 (ENSBGRG00000019080)	TCF21 (ENSBGRG00000019152)
Bos_b	ANCESTRAL SPECIES	24	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.l	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000008432.l	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000185181	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Cow	MODERN SPECIES	28	ECT2L (ENSBTAG00000027312)	CCDC28A (ENSBTAG00000015516)	NHSL1 (ENSBTAG00000000245)	HEBP2 (ENSBTAG00000000243)	ARFGEF3 (ENSBTAG00000017370)	PERP (ENSBTAG00000020097)	TNFAIP3 (ENSBTAG00000000436)	OLIG3 (ENSBTAG00000008749)	IFNGR1 (ENSBTAG00000012544)	IL22RA2 (ENSBTAG00000017000)	IL20RA (ENSBTAG00000015638)	SLC35D3 (ENSBTAG00000016793)	PEX7 (ENSBTAG00000016791)	MAP3K5 (ENSBTAG00000009065)	MAP7 (ENSBTAG00000001598) ##21	BCLAF1 (ENSBTAG00000007802) ##22	MTFR2 (ENSBTAG00000007799)	PDE7B (ENSBTAG00000015888)	ENSBTAG00000046495	AHI1 (ENSBTAG00000017958)	MYB (ENSBTAG00000012074)	HBS1L (ENSBTAG00000020174)	ALDH8A1 (ENSBTAG00000007975)	ENSBTAG00000050964	SGK1 (ENSBTAG00000004269)	SLC2A12 (ENSBTAG00000019002)	TBPL1 (ENSBTAG00000035370)	TCF21 (ENSBTAG00000021827)	EYA4 (ENSBTAG00000021970)	RPS12 (ENSBTAG00000001360)	SLC18B1 (ENSBTAG00000015242)
Hybrid Bos Indicus	MODERN SPECIES	28	CCDC28A (ENSBIXG00005026189)	NHSL1 (ENSBIXG00005004480)	ENSBIXG00005004489	SMIM28 (ENSBIXG00005004498)	ARFGEF3 (ENSBIXG00005026451)	ENSBIXG00005026496	TNFAIP3 (ENSBIXG00005004535)	OLIG3 (ENSBIXG00005004539)	IFNGR1 (ENSBIXG00005026601)	IL22RA2 (ENSBIXG00005026622)	IL20RA (ENSBIXG00005026689)	SLC35D3 (ENSBIXG00005026714)	PEX7 (ENSBIXG00005026748)	MAP3K5 (ENSBIXG00005026792)	MAP7 (ENSBIXG00005004633) ##21	BCLAF1 (ENSBIXG00005027187) ##22	MTFR2 (ENSBIXG00005027208)	ENSBIXG00005007583	PDE7B (ENSBIXG00005005610)	ENSBIXG00005027379	AHI1 (ENSBIXG00005027513)	MYB (ENSBIXG00005004779)	HBS1L (ENSBIXG00005028064)	ALDH8A1 (ENSBIXG00005028188)	ENSBIXG00005028211	SGK1 (ENSBIXG00005028436)	SLC2A12 (ENSBIXG00005004915)	TBPL1 (ENSBIXG00005004933)	ENSBIXG00005002400	EYA4 (ENSBIXG00005002280)	ENSBIXG00005028931
American bison	MODERN SPECIES	3117	CCDC28A (ENSBBBG00000002135)	NHSL1 (ENSBBBG00000011588)	HEBP2 (ENSBBBG00000002116)	SMIM28 (ENSBBBG00000011538)	ARFGEF3 (ENSBBBG00000011534)	ENSBBBG00000011504	TNFAIP3 (ENSBBBG00000011487)	OLIG3 (ENSBBBG00000002099)	IFNGR1 (ENSBBBG00000007970)	IL22RA2 (ENSBBBG00000002090)	IL20RA (ENSBBBG00000011411)	SLC35D3 (ENSBBBG00000006758)	PEX7 (ENSBBBG00000025472)	MAP3K5 (ENSBBBG00000025426)	MAP7 (ENSBBBG00000025344) ##21	BCLAF1 (ENSBBBG00000025127) ##22	MTFR2 (ENSBBBG00000007818)	PDE7B (ENSBBBG00000006552)	ENSBBBG00000024765	ENSBBBG00000006505	MYB (ENSBBBG00000000167)	HBS1L (ENSBBBG00000024102)	ALDH8A1 (ENSBBBG00000000303)	ENSBBBG00000023839	SGK1 (ENSBBBG00000023807)	SLC2A12 (ENSBBBG00000023678)	TBPL1 (ENSBBBG00000023665)	TCF21 (ENSBBBG00000023645)	EYA4 (ENSBBBG00000023613)	ENSBBBG00000000395	SLC18B1 (ENSBBBG00000000426)
Siberian musk deer	MODERN SPECIES	59	ENSMMSG00000001843	NHSL1 (ENSMMSG00000001822)	HEBP2 (ENSMMSG00000001795)	SMIM28 (ENSMMSG00000001785)	ARFGEF3 (ENSMMSG00000001733)	PERP (ENSMMSG00000001712)	TNFAIP3 (ENSMMSG00000001684)	OLIG3 (ENSMMSG00000001673)	IFNGR1 (ENSMMSG00000001659)	IL22RA2 (ENSMMSG00000001633)	IL20RA (ENSMMSG00000001560)	SLC35D3 (ENSMMSG00000001541)	PEX7 (ENSMMSG00000001524)	MAP3K5 (ENSMMSG00000001444)	MAP7 (ENSMMSG00000000545) ##21	BCLAF1 (ENSMMSG00000000221) ##22	MTFR2 (ENSMMSG00000000176)	PDE7B (ENSMMSG00000000115)
Yarkand deer	MODERN SPECIES	18	CCDC28A (ENSCHYG00000026493)	ENSCHYG00000026481	NHSL1 (ENSCHYG00000026431)	ENSCHYG00000026400	ARFGEF3 (ENSCHYG00000026237)	PERP (ENSCHYG00000026194)	TNFAIP3 (ENSCHYG00000026166)	OLIG3 (ENSCHYG00000026133)	IFNGR1 (ENSCHYG00000026112)	IL22RA2 (ENSCHYG00000026095)	IL20RA (ENSCHYG00000026016)	SLC35D3 (ENSCHYG00000026002)	PEX7 (ENSCHYG00000025953)	MAP3K5 (ENSCHYG00000025879)	MAP7 (ENSCHYG00000025635) ##21	BCLAF1 (ENSCHYG00000025304) ##22	MTFR2 (ENSCHYG00000025255)	PDE7B (ENSCHYG00000025119)	ENSCHYG00000025071	AHI1 (ENSCHYG00000025009)	MYB (ENSCHYG00000024610)	HBS1L (ENSCHYG00000024451)	ALDH8A1 (ENSCHYG00000024259)	ENSCHYG00000024232	ENSCHYG00000024196	SGK1 (ENSCHYG00000023724)	SLC2A12 (ENSCHYG00000023610)	TBPL1 (ENSCHYG00000023559)	TCF21 (ENSCHYG00000023525)	ENSCHYG00000023506	EYA4 (ENSCHYG00000023090)
Camelidae	ANCESTRAL SPECIES	37	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Arabian camel	MODERN SPECIES	34	CCDC28A (ENSCDRG00005013874)	NHSL1 (ENSCDRG00005013989)	HEBP2 (ENSCDRG00005014162)	SMIM28 (ENSCDRG00005014197)	ARFGEF3 (ENSCDRG00005014224)	PERP (ENSCDRG00005014505)	TNFAIP3 (ENSCDRG00005014565)	OLIG3 (ENSCDRG00005014653)	IFNGR1 (ENSCDRG00005014662)	IL22RA2 (ENSCDRG00005014705)	IL20RA (ENSCDRG00005014767)	SLC35D3 (ENSCDRG00005015088)	PEX7 (ENSCDRG00005015169)	MAP3K5 (ENSCDRG00005015332)	MAP7 (ENSCDRG00005015545) ##21	BCLAF1 (ENSCDRG00005017775) ##22	MTFR2 (ENSCDRG00005018327)	PDE7B (ENSCDRG00005018377)	AHI1 (ENSCDRG00005018511)	MYB (ENSCDRG00005018759)	HBS1L (ENSCDRG00005021331)	ALDH8A1 (ENSCDRG00005021478)	ENSCDRG00005021481	SGK1 (ENSCDRG00005021488)	SLC2A12 (ENSCDRG00005021503)	TBPL1 (ENSCDRG00005021546)	TCF21 (ENSCDRG00005021553)	EYA4 (ENSCDRG00005021570)	ENSCDRG00005021622	ENSCDRG00005021625	SLC18B1 (ENSCDRG00005021633)
Alpaca	MODERN SPECIES	558										ENSVPAG00000003936	IL20RA (ENSVPAG00000003935)	SLC35D3 (ENSVPAG00000003934)	PEX7 (ENSVPAG00000003933)	MAP3K5 (ENSVPAG00000003929)	MAP7 (ENSVPAG00000003926) ##21	BCLAF1 (ENSVPAG00000003924) ##22	MTFR2 (ENSVPAG00000003922)	PDE7B (ENSVPAG00000003920)	AHI1 (ENSVPAG00000003915)
Suina	ANCESTRAL SPECIES	18	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00540000070023.c.b.a.a.b	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Chacoan peccary	MODERN SPECIES	58	NHSL1 (ENSCWAG00000002036)	HEBP2 (ENSCWAG00000002090)	SMIM28 (ENSCWAG00000002100)	ENSCWAG00000002119	ARFGEF3 (ENSCWAG00000002143)	PERP (ENSCWAG00000002201)	TNFAIP3 (ENSCWAG00000002217)	OLIG3 (ENSCWAG00000002236)	IFNGR1 (ENSCWAG00000002246)	IL22RA2 (ENSCWAG00000002263)	IL20RA (ENSCWAG00000002295)	SLC35D3 (ENSCWAG00000002337)	PEX7 (ENSCWAG00000002350)	MAP3K5 (ENSCWAG00000002374)	MAP7 (ENSCWAG00000002498) ##21	BCLAF1 (ENSCWAG00000002874) ##22	MTFR2 (ENSCWAG00000002979)	PDE7B (ENSCWAG00000003019)	AHI1 (ENSCWAG00000003087)	MYB (ENSCWAG00000003233)	HBS1L (ENSCWAG00000005215)	ALDH8A1 (ENSCWAG00000005408)	ENSCWAG00000005520	SGK1 (ENSCWAG00000005577)	SLC2A12 (ENSCWAG00000005808)	TBPL1 (ENSCWAG00000005859)	TCF21 (ENSCWAG00000005887)	EYA4 (ENSCWAG00000006003)	ENSCWAG00000008596	SLC18B1 (ENSCWAG00000008668)	VNN2 (ENSCWAG00000008992)
Pig	MODERN SPECIES		ENSSSCG00000004150	SMIM28 (ENSSSCG00000048346)	ENSSSCG00000004151	ARFGEF3 (ENSSSCG00000022968)	PERP (ENSSSCG00000038420)	TNFAIP3 (ENSSSCG00000004154)	OLIG3 (ENSSSCG00000004155)	IFNGR1 (ENSSSCG00000004156)	IL22RA2 (ENSSSCG00000004158)	IL20RA (ENSSSCG00000004157)	SLC35D3 (ENSSSCG00000004159)	PEX7 (ENSSSCG00000004160)	MAP3K5 (ENSSSCG00000026041)	ENSSSCG00000046709	MAP7 (ENSSSCG00000039049) ##21	BCLAF1 (ENSSSCG00000004163) ##22	MTFR2 (ENSSSCG00000004164)	PDE7B (ENSSSCG00000004165)	AHI1 (ENSSSCG00000004166)	MYB (ENSSSCG00000004167)	ENSSSCG00000060550	HBS1L (ENSSSCG00000004169)	ALDH8A1 (ENSSSCG00000028115)	ENSSSCG00000004170	SGK1 (ENSSSCG00000021443)	SLC2A12 (ENSSSCG00000004172)	TBPL1 (ENSSSCG00000022387)	TCF21 (ENSSSCG00000033258)	EYA4 (ENSSSCG00000034139)	RPS12 (ENSSSCG00000004177)	SLC18B1 (ENSSSCG00000004178)
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Microbat	MODERN SPECIES	948	ECT2L (ENSMLUG00000003634)	CCDC28A (ENSMLUG00000003625)	NHSL1 (ENSMLUG00000015321)	HEBP2 (ENSMLUG00000015318)	ARFGEF3 (ENSMLUG00000001476)	PERP (ENSMLUG00000001473)	TNFAIP3 (ENSMLUG00000011543)	OLIG3 (ENSMLUG00000026705)	IFNGR1 (ENSMLUG00000008601)	IL22RA2 (ENSMLUG00000011981)	IL20RA (ENSMLUG00000027725)	SLC35D3 (ENSMLUG00000007099)	PEX7 (ENSMLUG00000007080)	MAP3K5 (ENSMLUG00000007043)	MAP7 (ENSMLUG00000007011) ##21	BCLAF1 (ENSMLUG00000002343) ##22	MTFR2 (ENSMLUG00000002331)	PDE7B (ENSMLUG00000002323)	AHI1 (ENSMLUG00000002136)	MYB (ENSMLUG00000002125)	ENSMLUG00000025301	HBS1L (ENSMLUG00000010618)	ALDH8A1 (ENSMLUG00000010607)	SGK1 (ENSMLUG00000016791)	SLC2A12 (ENSMLUG00000016784)	TBPL1 (ENSMLUG00000002050)	TCF21 (ENSMLUG00000009194)	EYA4 (ENSMLUG00000017308)	RPS12 (ENSMLUG00000001137)	SLC18B1 (ENSMLUG00000005809)	VNN2 (ENSMLUG00000004860)
Greater horseshoe bat	MODERN SPECIES	21	HEBP2 (ENSRFEG00010004794)	SMIM28 (ENSRFEG00010004786)	ARFGEF3 (ENSRFEG00010004768)	PERP (ENSRFEG00010004754)	TNFAIP3 (ENSRFEG00010004741)	OLIG3 (ENSRFEG00010004731)	IFNGR1 (ENSRFEG00010004717)	IL22RA2 (ENSRFEG00010004706)	IL20RA (ENSRFEG00010004692)	ENSRFEG00010004684	SLC35D3 (ENSRFEG00010004673)	PEX7 (ENSRFEG00010004663)	ENSRFEG00010004658	MAP3K5 (ENSRFEG00010004611)	MAP7 (ENSRFEG00010004535) ##21	BCLAF1 (ENSRFEG00010004398) ##22	MTFR2 (ENSRFEG00010004336)	PDE7B (ENSRFEG00010004294)	ENSRFEG00010004274	AHI1 (ENSRFEG00010004178)	MYB (ENSRFEG00010004034)	HBS1L (ENSRFEG00010003918)	ALDH8A1 (ENSRFEG00010003820)	SGK1 (ENSRFEG00010003588)	SLC2A12 (ENSRFEG00010003467)	TBPL1 (ENSRFEG00010003438)	TCF21 (ENSRFEG00010003415)	EYA4 (ENSRFEG00010003348)	ENSRFEG00010003233	SLC18B1 (ENSRFEG00010003181)	VNN2 (ENSRFEG00010003139)
Megabat	MODERN SPECIES	2269															MAP7 (ENSPVAG00000007234) ##21	BCLAF1 (ENSPVAG00000007233) ##22	MTFR2 (ENSPVAG00000007232)	PDE7B (ENSPVAG00000007231)
Equus	ANCESTRAL SPECIES	29	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Horse	MODERN SPECIES	1	ENSECAG00000013025	HEBP2 (ENSECAG00000012705)	SMIM28 (ENSECAG00000042188)	ENSECAG00000052359	ARFGEF3 (ENSECAG00000011074)	PERP (ENSECAG00000010262)	TNFAIP3 (ENSECAG00000009626)	OLIG3 (ENSECAG00000009598)	IFNGR1 (ENSECAG00000009347)	IL22RA2 (ENSECAG00000008817)	IL20RA (ENSECAG00000007642)	SLC35D3 (ENSECAG00000007507)	PEX7 (ENSECAG00000007461)	MAP3K5 (ENSECAG00000024860)	MAP7 (ENSECAG00000024302) ##21	BCLAF1 (ENSECAG00000023692) ##22	MTFR2 (ENSECAG00000038834)	PDE7B (ENSECAG00000020846)	AHI1 (ENSECAG00000019646)	MYB (ENSECAG00000009918)	HBS1L (ENSECAG00000004470)	ALDH8A1 (ENSECAG00000021674)	ENSECAG00000029781	SGK1 (ENSECAG00000020431)	SLC2A12 (ENSECAG00000020239)	TBPL1 (ENSECAG00000019486)	TCF21 (ENSECAG00000019197)	ENSECAG00000051625	ENSECAG00000058049	EYA4 (ENSECAG00000009316)	ENSECAG00000001599
Donkey	MODERN SPECIES	13	ENSEASG00005037446	ENSEASG00005028125	HEBP2 (ENSEASG00005034494)	SMIM28 (ENSEASG00005028436)	ARFGEF3 (ENSEASG00005011767)	ENSEASG00005034498	TNFAIP3 (ENSEASG00005011724)	OLIG3 (ENSEASG00005011723)	IFNGR1 (ENSEASG00005011722)	IL22RA2 (ENSEASG00005011721)	IL20RA (ENSEASG00005028860)	SLC35D3 (ENSEASG00005030411)	PEX7 (ENSEASG00005011713)	MAP3K5 (ENSEASG00005011455)	MAP7 (ENSEASG00005011215) ##21	BCLAF1 (ENSEASG00005011177) ##22	MTFR2 (ENSEASG00005011169)	PDE7B (ENSEASG00005011165)	AHI1 (ENSEASG00005011162)	MYB (ENSEASG00005011157)	ENSEASG00005031142	HBS1L (ENSEASG00005011148)	ALDH8A1 (ENSEASG00005011139)	SGK1 (ENSEASG00005011126)	SLC2A12 (ENSEASG00005011123)	ENSEASG00005011118	TCF21 (ENSEASG00005011116)	EYA4 (ENSEASG00005011112)	RPS12 (ENSEASG00005011103)	SLC18B1 (ENSEASG00005011101)	VNN2 (ENSEASG00005011098)
Carnivora	ANCESTRAL SPECIES	4	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Felidae	ANCESTRAL SPECIES	5	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Tiger	MODERN SPECIES	531	ECT2L (ENSPTIG00000013828)	CCDC28A (ENSPTIG00000016053)	NHSL1 (ENSPTIG00000016469)	HEBP2 (ENSPTIG00000017165)	SMIM28 (ENSPTIG00000018314)	ARFGEF3 (ENSPTIG00000018636)	PERP (ENSPTIG00000020244)	TNFAIP3 (ENSPTIG00000020430)	ENSPTIG00000007628	IL22RA2 (ENSPTIG00000008359)	IL20RA (ENSPTIG00000008630)	SLC35D3 (ENSPTIG00000009793)	PEX7 (ENSPTIG00000009999)	MAP3K5 (ENSPTIG00000010843)	MAP7 (ENSPTIG00000013943) ##21	BCLAF1 (ENSPTIG00000019385) ##22	MTFR2 (ENSPTIG00000020220)	PDE7B (ENSPTIG00000020531)
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
lion	MODERN SPECIES	5	CCDC28A (ENSPLOG00000015533)	NHSL1 (ENSPLOG00000015317)	HEBP2 (ENSPLOG00000015180)	SMIM28 (ENSPLOG00000015131)	ARFGEF3 (ENSPLOG00000014795)	PERP (ENSPLOG00000014727)	TNFAIP3 (ENSPLOG00000014623)	OLIG3 (ENSPLOG00000014588)	IFNGR1 (ENSPLOG00000014560)	IL22RA2 (ENSPLOG00000014459)	IL20RA (ENSPLOG00000014290)	SLC35D3 (ENSPLOG00000014233)	PEX7 (ENSPLOG00000014121)	MAP3K5 (ENSPLOG00000013624)	MAP7 (ENSPLOG00000012805) ##21	BCLAF1 (ENSPLOG00000012177) ##22	MTFR2 (ENSPLOG00000012074)	PDE7B (ENSPLOG00000011814)	ENSPLOG00000011744	AHI1 (ENSPLOG00000011612)	MYB (ENSPLOG00000011318)	HBS1L (ENSPLOG00000011065)	ALDH8A1 (ENSPLOG00000010852)	SGK1 (ENSPLOG00000022564)	SLC2A12 (ENSPLOG00000022554)	TBPL1 (ENSPLOG00000022547)	TCF21 (ENSPLOG00000022539)	EYA4 (ENSPLOG00000022457)	RPS12 (ENSPLOG00000022370)	SLC18B1 (ENSPLOG00000022341)	ENSPLOG00000022323
leopard	DUPLICATION
leopard	MODERN SPECIES	27	B4GALNT1 (ENSPPRG00000002321)	OS9 (ENSPPRG00000000870)	AGAP2 (ENSPPRG00000018437)	TSPAN31 (ENSPPRG00000016645)	CDK4 (ENSPPRG00000013706)	MARCHF9 (ENSPPRG00000012795)	CYP27B1 (ENSPPRG00000011671)	METTL1 (ENSPPRG00000011095)	EEF1AKMT3 (ENSPPRG00000010386)	TSFM (ENSPPRG00000009667)	AVIL (ENSPPRG00000008022)	CTDSP2 (ENSPPRG00000007688)	ATP23 (ENSPPRG00000006940)	LRIG3 (ENSPPRG00000005844)	SLC16A7 (ENSPPRG00000004556)	ENSPPRG00000003806 ##22	ENSPPRG00000017098	TAFA2 (ENSPPRG00000002926)	USP15 (ENSPPRG00000001415)	MON2 (ENSPPRG00000000598)	ENSPPRG00000015715	PPM1H (ENSPPRG00000014120)	AVPR1A (ENSPPRG00000013507)	RXYLT1 (ENSPPRG00000012565)	ENSPPRG00000011955	SRGAP1 (ENSPPRG00000011479)	ENSPPRG00000009845	ENSPPRG00000008524	KICS2 (ENSPPRG00000008288)	C12orf56 (ENSPPRG00000007840)	XPOT (ENSPPRG00000005552)
leopard	MODERN SPECIES	82	NHSL1 (ENSPPRG00000011486)	HEBP2 (ENSPPRG00000011018)	SMIM28 (ENSPPRG00000010627)	ARFGEF3 (ENSPPRG00000010225)	PERP (ENSPPRG00000010138)	ENSPPRG00000010132	TNFAIP3 (ENSPPRG00000009354)	OLIG3 (ENSPPRG00000021908)	ENSPPRG00000004790	IL22RA2 (ENSPPRG00000003819)	IL20RA (ENSPPRG00000003633)	SLC35D3 (ENSPPRG00000002355)	PEX7 (ENSPPRG00000002196)	MAP3K5 (ENSPPRG00000001889)	MAP7 (ENSPPRG00000001492) ##21	BCLAF1 (ENSPPRG00000023156) ##22	MTFR2 (ENSPPRG00000023744)	PDE7B (ENSPPRG00000024077)	AHI1 (ENSPPRG00000024365)	ENSPPRG00000014606	ENSPPRG00000014074	MYB (ENSPPRG00000012353)	HBS1L (ENSPPRG00000005285)	ALDH8A1 (ENSPPRG00000002155)	SGK1 (ENSPPRG00000000691)	SLC2A12 (ENSPPRG00000023028)	TBPL1 (ENSPPRG00000023235)	TCF21 (ENSPPRG00000023375)	EYA4 (ENSPPRG00000023698)	ENSPPRG00000006554	SLC18B1 (ENSPPRG00000006306)
Cat	DUPLICATION
Cat	MODERN SPECIES	238	SLC26A10 (ENSFCAG00000030779)	OS9 (ENSFCAG00000014691)	AGAP2 (ENSFCAG00000014695)	TSPAN31 (ENSFCAG00000026400)	CDK4 (ENSFCAG00000029663)	MARCHF9 (ENSFCAG00000045499)	CYP27B1 (ENSFCAG00000014701)	METTL1 (ENSFCAG00000032363)	EEF1AKMT3 (ENSFCAG00000032966)	TSFM (ENSFCAG00000023794)	AVIL (ENSFCAG00000014708)	CTDSP2 (ENSFCAG00000026269)	ATP23 (ENSFCAG00000030243)	LRIG3 (ENSFCAG00000006634)	SLC16A7 (ENSFCAG00000029220)	ENSFCAG00000048816 ##22	TAFA2 (ENSFCAG00000014482)	USP15 (ENSFCAG00000018475)	MON2 (ENSFCAG00000023896)	ENSFCAG00000034317	PPM1H (ENSFCAG00000022503)	ENSFCAG00000024093	AVPR1A (ENSFCAG00000014363)	RXYLT1 (ENSFCAG00000032579)	SRGAP1 (ENSFCAG00000019126)	ENSFCAG00000024929	ENSFCAG00000047674	ENSFCAG00000033114	KICS2 (ENSFCAG00000043203)	CB4H12orf56 (ENSFCAG00000001146)	XPOT (ENSFCAG00000012360)
Cat	MODERN SPECIES	236	NHSL1 (ENSFCAG00000027100)	HEBP2 (ENSFCAG00000039511)	SMIM28 (ENSFCAG00000046377)	ARFGEF3 (ENSFCAG00000013904)	PERP (ENSFCAG00000028929)	ENSFCAG00000039174	TNFAIP3 (ENSFCAG00000008135)	OLIG3 (ENSFCAG00000030246)	IFNGR1 (ENSFCAG00000030336)	IL22RA2 (ENSFCAG00000021984)	IL20RA (ENSFCAG00000029581)	SLC35D3 (ENSFCAG00000007846)	PEX7 (ENSFCAG00000029046)	MAP3K5 (ENSFCAG00000008186)	MAP7 (ENSFCAG00000008185) ##21	BCLAF1 (ENSFCAG00000027614) ##22	MTFR2 (ENSFCAG00000030038)	PDE7B (ENSFCAG00000029239)	ENSFCAG00000050931	ENSFCAG00000033467	AHI1 (ENSFCAG00000001813)	MYB (ENSFCAG00000001812)	HBS1L (ENSFCAG00000001810)	ALDH8A1 (ENSFCAG00000001809)	SGK1 (ENSFCAG00000013874)	SLC2A12 (ENSFCAG00000013872)	TBPL1 (ENSFCAG00000035311)	TCF21 (ENSFCAG00000031261)	EYA4 (ENSFCAG00000011142)	ENSFCAG00000034865	SLC18B1 (ENSFCAG00000011135)
Caniformia	ANCESTRAL SPECIES	3	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00960000191483	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Ferret	MODERN SPECIES	166	NHSL1 (ENSMPUG00000014886)	HEBP2 (ENSMPUG00000014882)	ENSMPUG00000018880	ARFGEF3 (ENSMPUG00000014874)	PERP (ENSMPUG00000014873)	TNFAIP3 (ENSMPUG00000014869)	OLIG3 (ENSMPUG00000018873)	IFNGR1 (ENSMPUG00000014867)	IL22RA2 (ENSMPUG00000014865)	ENSMPUG00000014851	ENSMPUG00000014848	SLC35D3 (ENSMPUG00000014847)	PEX7 (ENSMPUG00000014844)	MAP3K5 (ENSMPUG00000014837)	MAP7 (ENSMPUG00000014832) ##21	BCLAF1 (ENSMPUG00000014831) ##22	ENSMPUG00000014828	PDE7B (ENSMPUG00000014824)	AHI1 (ENSMPUG00000014816)	MYB (ENSMPUG00000014814)	HBS1L (ENSMPUG00000014810)	ALDH8A1 (ENSMPUG00000014807)	SGK1 (ENSMPUG00000014805)	SLC2A12 (ENSMPUG00000014803)	TBPL1 (ENSMPUG00000014801)	TCF21 (ENSMPUG00000014798)	ENSMPUG00000014795	ENSMPUG00000014791	EYA4 (ENSMPUG00000014787)	ENSMPUG00000018871	ENSMPUG00000014785
American mink	MODERN SPECIES	74	NHSL1 (ENSNVIG00000019352)	HEBP2 (ENSNVIG00000019332)	ENSNVIG00000019309	ARFGEF3 (ENSNVIG00000019245)	PERP (ENSNVIG00000019220)	TNFAIP3 (ENSNVIG00000019197)	OLIG3 (ENSNVIG00000019187)	ENSNVIG00000019175	IFNGR1 (ENSNVIG00000019165)	IL22RA2 (ENSNVIG00000019145)	IL20RA (ENSNVIG00000019125)	SLC35D3 (ENSNVIG00000019115)	PEX7 (ENSNVIG00000019108)	MAP3K5 (ENSNVIG00000019047)	MAP7 (ENSNVIG00000019008) ##21	BCLAF1 (ENSNVIG00000018905) ##22	ENSNVIG00000018887	PDE7B (ENSNVIG00000018838)	AHI1 (ENSNVIG00000018672)	MYB (ENSNVIG00000018282)	HBS1L (ENSNVIG00000018178)	ALDH8A1 (ENSNVIG00000018134)	SGK1 (ENSNVIG00000017967)	SLC2A12 (ENSNVIG00000017918)	TBPL1 (ENSNVIG00000017887)	TCF21 (ENSNVIG00000017869)	ENSNVIG00000017856	EYA4 (ENSNVIG00000017341)	RPS12 (ENSNVIG00000017281)	SLC18B1 (ENSNVIG00000017254)	ENSNVIG00000017237
Ursidae	ANCESTRAL SPECIES	22	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Ursus	ANCESTRAL SPECIES	45	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00390000008294.e.a.a.b	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Polar bear	MODERN SPECIES	172	ECT2L (ENSUMAG00000023771)	CCDC28A (ENSUMAG00000023778)	NHSL1 (ENSUMAG00000023785)	HEBP2 (ENSUMAG00000023790)	ARFGEF3 (ENSUMAG00000023799)	PERP (ENSUMAG00000023810)	TNFAIP3 (ENSUMAG00000023812)	OLIG3 (ENSUMAG00000023816)	IFNGR1 (ENSUMAG00000023819)	IL22RA2 (ENSUMAG00000023821)	IL20RA (ENSUMAG00000023823)	SLC35D3 (ENSUMAG00000023825)	PEX7 (ENSUMAG00000023831)	MAP3K5 (ENSUMAG00000023881)	MAP7 (ENSUMAG00000024005) ##21	BCLAF1 (ENSUMAG00000024012) ##22	MTFR2 (ENSUMAG00000024015)	ENSUMAG00000024016	PDE7B (ENSUMAG00000024021)	AHI1 (ENSUMAG00000024032)	MYB (ENSUMAG00000024089)	HBS1L (ENSUMAG00000024395)	ALDH8A1 (ENSUMAG00000024399)	SGK1 (ENSUMAG00000024403)	SLC2A12 (ENSUMAG00000024404)	TBPL1 (ENSUMAG00000024406)	TCF21 (ENSUMAG00000024407)	EYA4 (ENSUMAG00000024408)	ENSUMAG00000024410	SLC18B1 (ENSUMAG00000024415)	ENSUMAG00000024417
American black bear	MODERN SPECIES	695																BCLAF1 (ENSUAMG00000006413) ##22	MTFR2 (ENSUAMG00000006416)	ENSUAMG00000006419	ENSUAMG00000006421
Giant Panda	MODERN SPECIES	1	ECT2L (ENSAMEG00000030520)	CCDC28A (ENSAMEG00000011847)	NHSL1 (ENSAMEG00000027320)	HEBP2 (ENSAMEG00000011854)	SMIM28 (ENSAMEG00000028841)	ENSAMEG00000026590	ARFGEF3 (ENSAMEG00000011859)	PERP (ENSAMEG00000010156)	TNFAIP3 (ENSAMEG00000010128)	ENSAMEG00000010111	IL20RA (ENSAMEG00000010092)	SLC35D3 (ENSAMEG00000010086)	PEX7 (ENSAMEG00000010081)	MAP3K5 (ENSAMEG00000010066)	MAP7 (ENSAMEG00000010023) ##21	BCLAF1 (ENSAMEG00000009989) ##22	MTFR2 (ENSAMEG00000009980)	PDE7B (ENSAMEG00000009953)	ENSAMEG00000024593	AHI1 (ENSAMEG00000009893)	MYB (ENSAMEG00000009813)	HBS1L (ENSAMEG00000009749)	ALDH8A1 (ENSAMEG00000009730)	SGK1 (ENSAMEG00000015983)	SLC2A12 (ENSAMEG00000015979)	TBPL1 (ENSAMEG00000015958)	TCF21 (ENSAMEG00000028257)	EYA4 (ENSAMEG00000015924)	ENSAMEG00000010227	RPS12 (ENSAMEG00000008015)	SLC18B1 (ENSAMEG00000010643)
Canidae	ANCESTRAL SPECIES	34	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.g.a	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Canis_lupus	ANCESTRAL SPECIES		ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00940000154746.f	ENSGT00390000007084.c.b.x.a.b	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.g.a	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a.e
Dingo	MODERN SPECIES	125	ARFGEF3 (ENSCAFG00020022866)	PERP (ENSCAFG00020022860)	TNFAIP3 (ENSCAFG00020022788)	OLIG3 (ENSCAFG00020022780)	ENSCAFG00020022773	ENSCAFG00020022772	IFNGR1 (ENSCAFG00020022770)	ENSCAFG00020022769	IL22RA2 (ENSCAFG00020022749)	IL20RA (ENSCAFG00020022742)	SLC35D3 (ENSCAFG00020022738)	PEX7 (ENSCAFG00020022697)	ENSCAFG00020022693	MAP3K5 (ENSCAFG00020022645)	MAP7 (ENSCAFG00020022565) ##21	BCLAF1 (ENSCAFG00020022554) ##22	MTFR2 (ENSCAFG00020022551)	PDE7B (ENSCAFG00020022549)	AHI1 (ENSCAFG00020022540)	MYB (ENSCAFG00020021933)	HBS1L (ENSCAFG00020021904)	ALDH8A1 (ENSCAFG00020021903)	SGK1 (ENSCAFG00020021876)	ENSCAFG00020021874	SLC2A12 (ENSCAFG00020021868)	ENSCAFG00020021865	TCF21 (ENSCAFG00020021862)	EYA4 (ENSCAFG00020021829)	ENSCAFG00020021815	RPS12 (ENSCAFG00020021808)	SLC18B1 (ENSCAFG00020021806)
Dog	MODERN SPECIES		NHSL1 (ENSCAFG00845007489)	ARFGEF3 (ENSCAFG00845006884)	PERP (ENSCAFG00845006792)	TNFAIP3 (ENSCAFG00845006723)	ENSCAFG00845006691	ENSCAFG00845006623	ENSCAFG00845006600	IFNGR1 (ENSCAFG00845006567)	IL22RA2 (ENSCAFG00845006505)	IL20RA (ENSCAFG00845006434)	SLC35D3 (ENSCAFG00845006386)	PEX7 (ENSCAFG00845006309)	MAP3K5 (ENSCAFG00845006194)	MAP7 (ENSCAFG00845005916) ##21	ENSCAFG00845005728	BCLAF1 (ENSCAFG00845005654) ##22	MTFR2 (ENSCAFG00845005614)	PDE7B (ENSCAFG00845005425)	AHI1 (ENSCAFG00845005265)	MYB (ENSCAFG00845005160)	HBS1L (ENSCAFG00845005059)	ALDH8A1 (ENSCAFG00845005024)	SGK1 (ENSCAFG00845004995)	SLC2A12 (ENSCAFG00845004951)	ENSCAFG00845004931	TBPL1 (ENSCAFG00845004926)	TCF21 (ENSCAFG00845004920)	EYA4 (ENSCAFG00845004896)	RPS12 (ENSCAFG00845004862)	SLC18B1 (ENSCAFG00845004799)	ENSCAFG00845004781
Red fox	DUPLICATION
Red fox	MODERN SPECIES	26	ENSVVUG00000002382	TNFAIP3 (ENSVVUG00000002369)	ENSVVUG00000002359	OLIG3 (ENSVVUG00000002352)	ENSVVUG00000002335	ENSVVUG00000002326	IFNGR1 (ENSVVUG00000002286)	IL22RA2 (ENSVVUG00000002229)	IL20RA (ENSVVUG00000002217)	SLC35D3 (ENSVVUG00000002202)	PEX7 (ENSVVUG00000002175)	ENSVVUG00000002154	MAP3K5 (ENSVVUG00000000760)	MAP7 (ENSVVUG00000000652) ##21	ENSVVUG00000000623 ##22	ENSVVUG00000000603 ##22	MTFR2 (ENSVVUG00000000593)	PDE7B (ENSVVUG00000000584)	ENSVVUG00000000569	AHI1 (ENSVVUG00000000451)	MYB (ENSVVUG00000000361)	HBS1L (ENSVVUG00000000295)	ALDH8A1 (ENSVVUG00000000258)	ENSVVUG00000000216	SGK1 (ENSVVUG00000000114)	SLC2A12 (ENSVVUG00000000065)	TBPL1 (ENSVVUG00000019078)	TCF21 (ENSVVUG00000019073)	EYA4 (ENSVVUG00000019046)	ENSVVUG00000019039	RPS12 (ENSVVUG00000019024)
Red fox	MODERN SPECIES	26	ARFGEF3 (ENSVVUG00000002408)	ENSVVUG00000002382	TNFAIP3 (ENSVVUG00000002369)	ENSVVUG00000002359	OLIG3 (ENSVVUG00000002352)	ENSVVUG00000002335	ENSVVUG00000002326	IFNGR1 (ENSVVUG00000002286)	IL22RA2 (ENSVVUG00000002229)	IL20RA (ENSVVUG00000002217)	SLC35D3 (ENSVVUG00000002202)	PEX7 (ENSVVUG00000002175)	ENSVVUG00000002154	MAP3K5 (ENSVVUG00000000760)	MAP7 (ENSVVUG00000000652) ##21	ENSVVUG00000000623 ##22	ENSVVUG00000000603 ##22	MTFR2 (ENSVVUG00000000593)	PDE7B (ENSVVUG00000000584)	ENSVVUG00000000569	AHI1 (ENSVVUG00000000451)	MYB (ENSVVUG00000000361)	HBS1L (ENSVVUG00000000295)	ALDH8A1 (ENSVVUG00000000258)	ENSVVUG00000000216	SGK1 (ENSVVUG00000000114)	SLC2A12 (ENSVVUG00000000065)	TBPL1 (ENSVVUG00000019078)	TCF21 (ENSVVUG00000019073)	EYA4 (ENSVVUG00000019046)	ENSVVUG00000019039
Atlantogenata	ANCESTRAL SPECIES	51	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b	ENSGT00390000013823.b.c.b
Xenarthra	ANCESTRAL SPECIES	439									ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509
Sloth	MODERN SPECIES	1745																ENSCHOG00000009767 ##22
Armadillo	MODERN SPECIES	2554						OLIG3 (ENSDNOG00000042405)	ENSDNOG00000033108	ENSDNOG00000047511	ENSDNOG00000049724	IL22RA2 (ENSDNOG00000035934)	IL20RA (ENSDNOG00000034429)	SLC35D3 (ENSDNOG00000036032)	PEX7 (ENSDNOG00000039698)	MAP3K5 (ENSDNOG00000019294)	MAP7 (ENSDNOG00000013217) ##21	BCLAF1 (ENSDNOG00000019473) ##22	ENSDNOG00000032576	PDE7B (ENSDNOG00000041927)	AHI1 (ENSDNOG00000003425)
Afrotheria	ANCESTRAL SPECIES	55	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Afrotheria_a	ANCESTRAL SPECIES	51	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b	ENSGT00390000013823.b.c.a.a
Elephant	MODERN SPECIES	1	NHSL1 (ENSLAFG00000022496)	HEBP2 (ENSLAFG00000013501)	ARFGEF3 (ENSLAFG00000001882)	PERP (ENSLAFG00000000047)	TNFAIP3 (ENSLAFG00000011428)	OLIG3 (ENSLAFG00000005655)	IFNGR1 (ENSLAFG00000029501)	IL22RA2 (ENSLAFG00000001324)	ENSLAFG00000007603	SLC35D3 (ENSLAFG00000016308)	PEX7 (ENSLAFG00000007598)	ENSLAFG00000032335	MAP3K5 (ENSLAFG00000000588)	MAP7 (ENSLAFG00000004444) ##21	ENSLAFG00000032469	BCLAF1 (ENSLAFG00000015982) ##22	MTFR2 (ENSLAFG00000031342)	PDE7B (ENSLAFG00000018738)	AHI1 (ENSLAFG00000017402)	MYB (ENSLAFG00000018350)	HBS1L (ENSLAFG00000007835)	ALDH8A1 (ENSLAFG00000007832)	SGK1 (ENSLAFG00000012698)	SLC2A12 (ENSLAFG00000014066)	TBPL1 (ENSLAFG00000014064)	TCF21 (ENSLAFG00000009507)	EYA4 (ENSLAFG00000012196)	RPS12 (ENSLAFG00000007933)	SLC18B1 (ENSLAFG00000001053)	ENSLAFG00000026575	ENSLAFG00000017269
Hyrax	MODERN SPECIES	8349																BCLAF1 (ENSPCAG00000012422) ##22
Tenrec	MODERN SPECIES	1623																BCLAF1 (ENSETEG00000015572) ##22
Platypus	MODERN SPECIES	11	CCDC28A (ENSOANG00000014803)	NHSL1 (ENSOANG00000020185)	HEBP2 (ENSOANG00000049313)	SMIM28 (ENSOANG00000036691)	ARFGEF3 (ENSOANG00000014799)	PERP (ENSOANG00000047720)	TNFAIP3 (ENSOANG00000014797)	OLIG3 (ENSOANG00000014796)	ENSOANG00000050067	ENSOANG00000005256	IL20RA (ENSOANG00000005257)	SLC35D3 (ENSOANG00000005259)	PEX7 (ENSOANG00000011627)	MAP3K5 (ENSOANG00000009449)	MAP7 (ENSOANG00000009448) ##21	BCLAF1 (ENSOANG00000009444) ##22	ENSOANG00000009443	MTFR2 (ENSOANG00000009442)	PDE7B (ENSOANG00000009441)	AHI1 (ENSOANG00000031640)	MYB (ENSOANG00000002777)	HBS1L (ENSOANG00000002684)	ALDH8A1 (ENSOANG00000051194)	SGK1 (ENSOANG00000013095)	SLC2A12 (ENSOANG00000013096)	TBPL1 (ENSOANG00000013097)	TCF21 (ENSOANG00000013098)	EYA4 (ENSOANG00000001885)	RPS12 (ENSOANG00000001886)	SLC18B1 (ENSOANG00000022303)	VNN1 (ENSOANG00000005318)
Sauria	ANCESTRAL SPECIES	1	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v
Archosauria	ANCESTRAL SPECIES	3	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v
Aves	ANCESTRAL SPECIES	10	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674
Neognathae	ANCESTRAL SPECIES	2	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.d
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.d
Golden eagle	MODERN SPECIES	24	ABRACL (ENSACCG00020009384)	REPS1 (ENSACCG00020009423)	CCDC28A (ENSACCG00020009445)	NHSL1 (ENSACCG00020009456)	ARFGEF3 (ENSACCG00020009597)	ENSACCG00020009673	ENSACCG00020009689	TNFAIP3 (ENSACCG00020009700)	IFNGR1 (ENSACCG00020009731)	IL22RA2 (ENSACCG00020009750)	IL20RA (ENSACCG00020009766)	SLC35D3 (ENSACCG00020009782)	PEX7 (ENSACCG00020009809)	MAP3K5 (ENSACCG00020010052)	MAP7 (ENSACCG00020010236) ##21	BCLAF1 (ENSACCG00020010306) ##22	MTFR2 (ENSACCG00020010333)	PDE7B (ENSACCG00020010364)	AHI1 (ENSACCG00020010490)	MYB (ENSACCG00020010629)	HBS1L (ENSACCG00020010711)	ALDH8A1 (ENSACCG00020010741)	ENSACCG00020010755	SGK1 (ENSACCG00020010771)	SLC2A12 (ENSACCG00020010793)	TBPL1 (ENSACCG00020010801)	TCF21 (ENSACCG00020010810)	EYA4 (ENSACCG00020010829)	RPS12 (ENSACCG00020010852)	SLC18B1 (ENSACCG00020010875)	ENSACCG00020010899
Kakapo	MODERN SPECIES	23	NHSL1 (ENSSHBG00005008855)	SMIM28 (ENSSHBG00005008871)	ARFGEF3 (ENSSHBG00005009013)	ENSSHBG00005011534	ENSSHBG00005011558	TNFAIP3 (ENSSHBG00005011572)	OLIG3 (ENSSHBG00005011590)	IFNGR1 (ENSSHBG00005011606)	IL22RA2 (ENSSHBG00005011662)	IL20RA (ENSSHBG00005012074)	SLC35D3 (ENSSHBG00005012096)	PEX7 (ENSSHBG00005012108)	ENSSHBG00005012139	ENSSHBG00005012177	MAP7 (ENSSHBG00005012212) ##21	BCLAF1 (ENSSHBG00005012302) ##22	MTFR2 (ENSSHBG00005012363)	PDE7B (ENSSHBG00005012395)	AHI1 (ENSSHBG00005012471)	MYB (ENSSHBG00005012616)	HBS1L (ENSSHBG00005012719)	ALDH8A1 (ENSSHBG00005012753)	ENSSHBG00005012780	SGK1 (ENSSHBG00005012816)	SLC2A12 (ENSSHBG00005012830)	TBPL1 (ENSSHBG00005012846)	TCF21 (ENSSHBG00005012861)	EYA4 (ENSSHBG00005012959)	RPS12 (ENSSHBG00005013736)	SLC18B1 (ENSSHBG00005013767)	ENSSHBG00005013779
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A
Great tit	MODERN SPECIES	22	CCDC28A (ENSPMJG00000008169)	NHSL1 (ENSPMJG00000008158)	ARFGEF3 (ENSPMJG00000008023)	ENSPMJG00000007992	ENSPMJG00000007991	TNFAIP3 (ENSPMJG00000007989)	OLIG3 (ENSPMJG00000007987)	IFNGR1 (ENSPMJG00000007955)	IL22RA2 (ENSPMJG00000007952)	IL20RA (ENSPMJG00000007951)	SLC35D3 (ENSPMJG00000007950)	PEX7 (ENSPMJG00000007944)	MAP3K5 (ENSPMJG00000007880)	MAP7 (ENSPMJG00000007877) ##21	ENSPMJG00000007875	BCLAF1 (ENSPMJG00000007819) ##22	MTFR2 (ENSPMJG00000007817)	PDE7B (ENSPMJG00000007811)	SF3B5 (ENSPMJG00000007762)	STX11 (ENSPMJG00000007760)	UTRN (ENSPMJG00000007742)	EPM2A (ENSPMJG00000007665)	FBXO30 (ENSPMJG00000007660)	SHPRH (ENSPMJG00000007567)	GRM1 (ENSPMJG00000007559)	RAB32 (ENSPMJG00000007510)	ADGB (ENSPMJG00000007507)	STXBP5 (ENSPMJG00000007452)	SAMD5 (ENSPMJG00000007450)	SASH1 (ENSPMJG00000007409)	UST (ENSPMJG00000007400)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A
Passeroidea	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701	ENSGT00940000156778	ENSGT00530000063408.A
Common canary	MODERN SPECIES	20	CCDC28A (ENSSCAG00000003177)	NHSL1 (ENSSCAG00000003161)	ARFGEF3 (ENSSCAG00000003112)	ENSSCAG00000003099	ENSSCAG00000003098	TNFAIP3 (ENSSCAG00000003091)	OLIG3 (ENSSCAG00000003086)	ENSSCAG00000003075	IL22RA2 (ENSSCAG00000003070)	IL20RA (ENSSCAG00000003065)	SLC35D3 (ENSSCAG00000003062)	PEX7 (ENSSCAG00000003055)	MAP3K5 (ENSSCAG00000002961)	MAP7 (ENSSCAG00000002916) ##21	ENSSCAG00000002904	BCLAF1 (ENSSCAG00000002878) ##22	MTFR2 (ENSSCAG00000002866)	PDE7B (ENSSCAG00000002860)	SF3B5 (ENSSCAG00000002853)	STX11 (ENSSCAG00000002848)	UTRN (ENSSCAG00000002753)	EPM2A (ENSSCAG00000002716)	FBXO30 (ENSSCAG00000002710)	SHPRH (ENSSCAG00000002701)	GRM1 (ENSSCAG00000002665)	RAB32 (ENSSCAG00000002655)	ENSSCAG00000002654	STXBP5 (ENSSCAG00000000855)
Zebra finch	MODERN SPECIES	23	CCDC28A (ENSTGUG00000010912)	NHSL1 (ENSTGUG00000010910)	ARFGEF3 (ENSTGUG00000010902)	ENSTGUG00000028968	ENSTGUG00000025381	TNFAIP3 (ENSTGUG00000010895)	OLIG3 (ENSTGUG00000010892)	IFNGR1 (ENSTGUG00000029412)	IL22RA2 (ENSTGUG00000010883)	IL20RA (ENSTGUG00000010881)	PEX7 (ENSTGUG00000010872)	SLC35D3 (ENSTGUG00000010879)	MAP3K5 (ENSTGUG00000010854)	MAP7 (ENSTGUG00000010845) ##21	ENSTGUG00000022971	BCLAF1 (ENSTGUG00000010835) ##22	MTFR2 (ENSTGUG00000010828)	PDE7B (ENSTGUG00000010811)	SF3B5 (ENSTGUG00000010810)	STX11 (ENSTGUG00000010809)	UTRN (ENSTGUG00000010792)	EPM2A (ENSTGUG00000010784)	FBXO30 (ENSTGUG00000010780)	ENSTGUG00000027835	SHPRH (ENSTGUG00000010769)	GRM1 (ENSTGUG00000010757)	RAB32 (ENSTGUG00000010754)	ADGB (ENSTGUG00000010743)	STXBP5 (ENSTGUG00000010707)	SAMD5 (ENSTGUG00000022196)	SASH1 (ENSTGUG00000010682)
Medium ground finch	MODERN SPECIES	19	CCDC28A (ENSGFOG00000000244)	NHSL1 (ENSGFOG00000000232)	ARFGEF3 (ENSGFOG00000000107)	ENSGFOG00000000069	ENSGFOG00000000067	TNFAIP3 (ENSGFOG00000000065)	OLIG3 (ENSGFOG00000000063)	ENSGFOG00000000060	IL22RA2 (ENSGFOG00000000056)	IL20RA (ENSGFOG00000000052)	SLC35D3 (ENSGFOG00000000049)	PEX7 (ENSGFOG00000000046)	MAP3K5 (ENSGFOG00000010728)	MAP7 (ENSGFOG00000010697) ##21	ENSGFOG00000010691	BCLAF1 (ENSGFOG00000010684) ##22	MTFR2 (ENSGFOG00000010676)	PDE7B (ENSGFOG00000010661)	SF3B5 (ENSGFOG00000010657)	STX11 (ENSGFOG00000010650)	UTRN (ENSGFOG00000010557)	EPM2A (ENSGFOG00000010537)	FBXO30 (ENSGFOG00000010534)	SHPRH (ENSGFOG00000010511)	GRM1 (ENSGFOG00000010494)	RAB32 (ENSGFOG00000010487)	STXBP5 (ENSGFOG00000009605)	ENSGFOG00000009544	SASH1 (ENSGFOG00000009483)	UST (ENSGFOG00000009469)	TAB2 (ENSGFOG00000009460)
Flycatcher	MODERN SPECIES	21	CCDC28A (ENSFALG00000012829)	NHSL1 (ENSFALG00000012835)	ARFGEF3 (ENSFALG00000012840)	ENSFALG00000027131	ENSFALG00000028881	TNFAIP3 (ENSFALG00000012857)	OLIG3 (ENSFALG00000028727)	IFNGR1 (ENSFALG00000012866)	IL22RA2 (ENSFALG00000012869)	IL20RA (ENSFALG00000012875)	SLC35D3 (ENSFALG00000012882)	PEX7 (ENSFALG00000012884)	MAP3K5 (ENSFALG00000012890)	MAP7 (ENSFALG00000012907) ##21	ENSFALG00000012925	BCLAF1 (ENSFALG00000012928) ##22	MTFR2 (ENSFALG00000012933)	PDE7B (ENSFALG00000024524)	SF3B5 (ENSFALG00000015012)	STX11 (ENSFALG00000015034)	UTRN (ENSFALG00000012991)	ENSFALG00000027687	EPM2A (ENSFALG00000013054)	FBXO30 (ENSFALG00000013057)	SHPRH (ENSFALG00000013061)	GRM1 (ENSFALG00000013082)	ENSFALG00000013096	ADGB (ENSFALG00000013099)	STXBP5 (ENSFALG00000013101)	SAMD5 (ENSFALG00000015053)	SASH1 (ENSFALG00000013106)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674
Anatidae	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.d
Pink-footed goose	MODERN SPECIES	2	CCDC28A (ENSABRG00000011207)	NHSL1 (ENSABRG00000011189)	ARFGEF3 (ENSABRG00000011113)	ENSABRG00000011104	ENSABRG00000011099	TNFAIP3 (ENSABRG00000011093)	OLIG3 (ENSABRG00000011084)	IFNGR1 (ENSABRG00000011074)	IL22RA2 (ENSABRG00000011065)	IL20RA (ENSABRG00000011059)	SLC35D3 (ENSABRG00000011045)	PEX7 (ENSABRG00000011002)	MAP3K5 (ENSABRG00000010976)	MAP7 (ENSABRG00000010940) ##21	ENSABRG00000010926	BCLAF1 (ENSABRG00000010906) ##22	MTFR2 (ENSABRG00000010901)	PDE7B (ENSABRG00000010894)	AHI1 (ENSABRG00000010871)	MYB (ENSABRG00000010866)	HBS1L (ENSABRG00000010857)	ALDH8A1 (ENSABRG00000010851)	ENSABRG00000010848	ENSABRG00000010824	SGK1 (ENSABRG00000010801)	SLC2A12 (ENSABRG00000010791)	TBPL1 (ENSABRG00000010783)	TCF21 (ENSABRG00000010780)	EYA4 (ENSABRG00000009530)	RPS12 (ENSABRG00000009212)	SLC18B1 (ENSABRG00000009180)
Duck	MODERN SPECIES	21	CCDC28A (ENSAPLG00000027699)	NHSL1 (ENSAPLG00000003036)	ARFGEF3 (ENSAPLG00000002724)	ENSAPLG00000030007	ENSAPLG00000002685	TNFAIP3 (ENSAPLG00000002302)	OLIG3 (ENSAPLG00000018777)	IFNGR1 (ENSAPLG00000002012)	IL22RA2 (ENSAPLG00000001211)	IL20RA (ENSAPLG00000001174)	SLC35D3 (ENSAPLG00000001170)	PEX7 (ENSAPLG00000016238)	MAP3K5 (ENSAPLG00000015796)	MAP7 (ENSAPLG00000012664) ##21	ENSAPLG00000012545	BCLAF1 (ENSAPLG00000007570) ##22	MTFR2 (ENSAPLG00000007596)	PDE7B (ENSAPLG00000007602)	ENSAPLG00000029770	ENSAPLG00000007676	MYB (ENSAPLG00000007728)	HBS1L (ENSAPLG00000007791)	ALDH8A1 (ENSAPLG00000007873)	SGK1 (ENSAPLG00000007896)	SLC2A12 (ENSAPLG00000007989)	TBPL1 (ENSAPLG00000007996)	TCF21 (ENSAPLG00000008024)	EYA4 (ENSAPLG00000008029)	RPS12 (ENSAPLG00000008543)	SLC18B1 (ENSAPLG00000008600)	ENSAPLG00000008745
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.d
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.d	ENSGT00390000013823.b.d.c
Chicken	MODERN SPECIES	22	SMIM28 (ENSGALG00010004239)	ARFGEF3 (ENSGALG00010004245)	PERPB (ENSGALG00010004108)	PERPA (ENSGALG00010006794)	TNFAIP3 (ENSGALG00010006025)	OLIG3 (ENSGALG00010006374)	IFNGR1 (ENSGALG00010005291)	IL22RA2 (ENSGALG00010005297)	IL20RA (ENSGALG00010005314)	SLC35D3 (ENSGALG00010005318)	PEX7 (ENSGALG00010005336)	MAP3K5 (ENSGALG00010005342)	MAP7 (ENSGALG00010005364) ##21	ENSGALG00010005378	MTFR2 (ENSGALG00010005412)	BCLAF1 (ENSGALG00010005401) ##22	PDE7B (ENSGALG00010005437)	AHI1 (ENSGALG00010005462)	MYB (ENSGALG00010005884)	HBS1L (ENSGALG00010004639)	ALDH8A1 (ENSGALG00010006336)	SGK1 (ENSGALG00010006359)	SLC2A12 (ENSGALG00010005990)	TBPL1 (ENSGALG00010006173)	TCF21 (ENSGALG00010006187)	EYA4 (ENSGALG00010006239)	RPS12 (ENSGALG00010004255)	SLC18B1 (ENSGALG00010004285)	ENSGALG00010004291	VNN2 (ENSGALG00010004300)	ENSGALG00010006816
Turkey	MODERN SPECIES	11	MYCT1 (ENSMGAG00000015856)	VIP (ENSMGAG00000012740)	MTRF1L (ENSMGAG00000012738)	RGS17 (ENSMGAG00000012749)	OPRM1 (ENSMGAG00000012751)	ENSMGAG00000012753	ENSMGAG00000012756	SCAF8 (ENSMGAG00000012762)	TIAM2 (ENSMGAG00000012772)	TFB1M (ENSMGAG00000012779)	CLDN20 (ENSMGAG00000015858)	NOX3 (ENSMGAG00000012787)	ENSMGAG00000020145	ENSMGAG00000013036	ENSMGAG00000013037	BCLAF1 (ENSMGAG00000013030) ##22	ENSMGAG00000021079	ENSMGAG00000013020 ##21	ENSMGAG00000021782	ENSMGAG00000020128	ENSMGAG00000013015	ENSMGAG00000013008	ENSMGAG00000013007	ENSMGAG00000013005	ENSMGAG00000013003	ENSMGAG00000019905	ENSMGAG00000012999	ENSMGAG00000013001	ENSMGAG00000012996	NHSL1 (ENSMGAG00000012975)	ENSMGAG00000012965
Japanese quail	MODERN SPECIES	21	ENSCJPG00005008818	NHSL1 (ENSCJPG00005008828)	ARFGEF3 (ENSCJPG00005008832)	ENSCJPG00005008847	ENSCJPG00005008850	TNFAIP3 (ENSCJPG00005008853)	OLIG3 (ENSCJPG00005008858)	IFNGR1 (ENSCJPG00005008861)	IL22RA2 (ENSCJPG00005008862)	IL20RA (ENSCJPG00005008863)	SLC35D3 (ENSCJPG00005008864)	PEX7 (ENSCJPG00005008865)	MAP3K5 (ENSCJPG00005008866)	MAP7 (ENSCJPG00005008867) ##21	ENSCJPG00005008868	BCLAF1 (ENSCJPG00005008869) ##22	MTFR2 (ENSCJPG00005008870)	PDE7B (ENSCJPG00005008871)	AHI1 (ENSCJPG00005008874)	MYB (ENSCJPG00005008875)	ENSCJPG00005008877	HBS1L (ENSCJPG00005008878)	ALDH8A1 (ENSCJPG00005008879)	SGK1 (ENSCJPG00005008885)	SLC2A12 (ENSCJPG00005008887)	TBPL1 (ENSCJPG00005008888)	TCF21 (ENSCJPG00005008889)	EYA4 (ENSCJPG00005008894)	RPS12 (ENSCJPG00005008897)	SLC18B1 (ENSCJPG00005008901)	ENSCJPG00005008902
African ostrich	MODERN SPECIES	1073	CCDC28A (ENSSCUG00000014438)	NHSL1 (ENSSCUG00000014431)	ARFGEF3 (ENSSCUG00000014402)	ENSSCUG00000014396	ENSSCUG00000014395	TNFAIP3 (ENSSCUG00000014392)	OLIG3 (ENSSCUG00000014391)	IFNGR1 (ENSSCUG00000014389)	IL22RA2 (ENSSCUG00000014388)	IL20RA (ENSSCUG00000014385)	SLC35D3 (ENSSCUG00000014382)	PEX7 (ENSSCUG00000014381)	MAP3K5 (ENSSCUG00000014363)	MAP7 (ENSSCUG00000014349) ##21	ENSSCUG00000014345	BCLAF1 (ENSSCUG00000014341) ##22	MTFR2 (ENSSCUG00000014339)	PDE7B (ENSSCUG00000014336)	AHI1 (ENSSCUG00000014329)	MYB (ENSSCUG00000014318)	HBS1L (ENSSCUG00000014221)	ALDH8A1 (ENSSCUG00000014132)	SGK1 (ENSSCUG00000014126)	SLC2A12 (ENSSCUG00000014121)	TBPL1 (ENSSCUG00000014118)	TCF21 (ENSSCUG00000014112)	EYA4 (ENSSCUG00000014105)	RPS12 (ENSSCUG00000014088)	SLC18B1 (ENSSCUG00000014080)	ENSSCUG00000014070	TAAR5 (ENSSCUG00000014061)
Australian saltwater crocodile	MODERN SPECIES	60	CCDC28A (ENSCPRG00005001360)	NHSL1 (ENSCPRG00005001408)	ARFGEF3 (ENSCPRG00005001438)	ENSCPRG00005001515	ENSCPRG00005001520	TNFAIP3 (ENSCPRG00005001541)	OLIG3 (ENSCPRG00005001547)	IFNGR1 (ENSCPRG00005001587)	IL22RA2 (ENSCPRG00005001608)	IL20RA (ENSCPRG00005001614)	SLC35D3 (ENSCPRG00005001621)	PEX7 (ENSCPRG00005001638)	ENSCPRG00005001642	MAP3K5 (ENSCPRG00005001647)	MAP7 (ENSCPRG00005001710) ##21	BCLAF1 (ENSCPRG00005001752) ##22	ENSCPRG00005001856	MTFR2 (ENSCPRG00005001894)	PDE7B (ENSCPRG00005001905)	AHI1 (ENSCPRG00005001962)	MYB (ENSCPRG00005002016)	HBS1L (ENSCPRG00005002062)	ALDH8A1 (ENSCPRG00005002075)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00960000189180	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.d.f
Testudinoidea	ANCESTRAL SPECIES	32	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00950000182978.A.a.a.a.b	ENSGT00390000018318.u.b.b	ENSGT00940000156674.n
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.u.b.b	ENSGT00940000156674.n	ENSGT00390000013823.b.d.f.b
Abingdon island giant tortoise	MODERN SPECIES	227	ECT2L (ENSCABG00000010617)	CCDC28A (ENSCABG00000010621)	HEBP2 (ENSCABG00000010625)	ARFGEF3 (ENSCABG00000010627)	ENSCABG00000010628	ENSCABG00000010629	TNFAIP3 (ENSCABG00000010638)	OLIG3 (ENSCABG00000010641)	IFNGR1 (ENSCABG00000010642)	IL22RA2 (ENSCABG00000010644)	IL20RA (ENSCABG00000010646)	SLC35D3 (ENSCABG00000010649)	PEX7 (ENSCABG00000010655)	MAP3K5 (ENSCABG00000010658)	MAP7 (ENSCABG00000010662) ##21	BCLAF1 (ENSCABG00000010663) ##22	MTFR2 (ENSCABG00000010664)	PDE7B (ENSCABG00000010666)	NAP1L4 (ENSCABG00000010670)	PHLDA2 (ENSCABG00000010675)	SLC22A18 (ENSCABG00000010676)	CDKN1C (ENSCABG00000010678)	KCNQ1 (ENSCABG00000010679)	TRPM5 (ENSCABG00000010689)	TSSC4 (ENSCABG00000010694)	CD81 (ENSCABG00000010697)	ENSCABG00000010701	TH (ENSCABG00000010704)	ENSCABG00000010705	IGF2 (ENSCABG00000010706)	ENSCABG00000010708
Goode s thornscrub tortoise	MODERN SPECIES	17	CCDC28A (ENSGEVG00005008151)	NHSL1 (ENSGEVG00005007994)	ENSGEVG00005007932	ARFGEF3 (ENSGEVG00005007723)	ENSGEVG00005007670	ENSGEVG00005007635	TNFAIP3 (ENSGEVG00005007607)	OLIG3 (ENSGEVG00005007591)	ENSGEVG00005007546	IL22RA2 (ENSGEVG00005007496)	IL20RA (ENSGEVG00005007442)	SLC35D3 (ENSGEVG00005007413)	PEX7 (ENSGEVG00005007361)	MAP3K5 (ENSGEVG00005005197)	MAP7 (ENSGEVG00005004461) ##21	BCLAF1 (ENSGEVG00005004317) ##22	MTFR2 (ENSGEVG00005004278)	PDE7B (ENSGEVG00005004167)	AHI1 (ENSGEVG00005004094)	MYB (ENSGEVG00005004048)	HBS1L (ENSGEVG00005004019)	ALDH8A1 (ENSGEVG00005004008)	ENSGEVG00005003999	SGK1 (ENSGEVG00005003985)	SLC2A12 (ENSGEVG00005003943)	TBPL1 (ENSGEVG00005003916)	TCF21 (ENSGEVG00005003908)	EYA4 (ENSGEVG00005003854)	RPS12 (ENSGEVG00005003792)	ENSGEVG00005003768	ENSGEVG00005003743
Emydidae	ANCESTRAL SPECIES	46	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00950000182978.A.a.a.a.b	ENSGT00390000018318.u.b.b	ENSGT00940000156674.n
Three-toed box turtle	MODERN SPECIES	31	ECT2L (ENSTMTG00000000533)	CCDC28A (ENSTMTG00000000567)	NHSL1 (ENSTMTG00000000586)	HEBP2 (ENSTMTG00000000609)	ARFGEF3 (ENSTMTG00000000760)	PERP (ENSTMTG00000001548)	TNFAIP3 (ENSTMTG00000001555)	OLIG3 (ENSTMTG00000001569)	IFNGR1 (ENSTMTG00000001577)	IL22RA2 (ENSTMTG00000001584)	IL20RA (ENSTMTG00000001589)	SLC35D3 (ENSTMTG00000001600)	PEX7 (ENSTMTG00000001605)	MAP3K5 (ENSTMTG00000001615)	MAP7 (ENSTMTG00000001650) ##21	BCLAF1 (ENSTMTG00000001674) ##22	MTFR2 (ENSTMTG00000001701)	PDE7B (ENSTMTG00000001718)	MYB (ENSTMTG00000001755)	HBS1L (ENSTMTG00000001830)	ALDH8A1 (ENSTMTG00000001851)	ENSTMTG00000001860	SGK1 (ENSTMTG00000001868)	SLC2A12 (ENSTMTG00000001887)	TBPL1 (ENSTMTG00000001895)	TCF21 (ENSTMTG00000001901)	ENSTMTG00000001913	ENSTMTG00000001941	RPS12 (ENSTMTG00000001949)	ENSTMTG00000001969	ENSTMTG00000001995
painted turtle	MODERN SPECIES	12	ECT2L (ENSCPBG00000017197)	CCDC28A (ENSCPBG00000017201)	NHSL1 (ENSCPBG00000017203)	HEBP2 (ENSCPBG00000017208)	ARFGEF3 (ENSCPBG00000017225)	ENSCPBG00000017530	ENSCPBG00000017531	TNFAIP3 (ENSCPBG00000017533)	OLIG3 (ENSCPBG00000017537)	IFNGR1 (ENSCPBG00000017540)	IL22RA2 (ENSCPBG00000017544)	IL20RA (ENSCPBG00000017546)	PEX7 (ENSCPBG00000017550)	MAP3K5 (ENSCPBG00000017559)	MAP7 (ENSCPBG00000017573) ##21	BCLAF1 (ENSCPBG00000017585) ##22	MTFR2 (ENSCPBG00000017594)	PDE7B (ENSCPBG00000017603)	AHI1 (ENSCPBG00000017619)	MYB (ENSCPBG00000017622)	HBS1L (ENSCPBG00000017635)	ALDH8A1 (ENSCPBG00000017640)	ENSCPBG00000017645	SGK1 (ENSCPBG00000017648)	SLC2A12 (ENSCPBG00000017651)	TBPL1 (ENSCPBG00000017654)	TCF21 (ENSCPBG00000017657)	EYA4 (ENSCPBG00000017662)	RPS12 (ENSCPBG00000017677)	SLC18B1 (ENSCPBG00000017686)	ENSCPBG00000017701
Chinese turtle	MODERN SPECIES	1157														MAP7 (ENSPSIG00000006272) ##21	ENSPSIG00000007058	BCLAF1 (ENSPSIG00000007141) ##22	MTFR2 (ENSPSIG00000009634)	PDE7B (ENSPSIG00000010619)	AHI1 (ENSPSIG00000010898)	MYB (ENSPSIG00000011892)	HBS1L (ENSPSIG00000016467)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d
Episquamata	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d
Toxicofera	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d
Elapidae	ANCESTRAL SPECIES		ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d
Indian cobra	MODERN SPECIES		CCDC28A (ENSNNAG00000001770)	NHSL1 (ENSNNAG00000001792)	HEBP2 (ENSNNAG00000001818)	ARFGEF3 (ENSNNAG00000001883)	PERP (ENSNNAG00000002038)	ENSNNAG00000002044	TNFAIP3 (ENSNNAG00000002057)	OLIG3 (ENSNNAG00000002072)	ENSNNAG00000002084	IL20RA (ENSNNAG00000002098)	SLC35D3 (ENSNNAG00000002112)	PEX7 (ENSNNAG00000002125)	MAP3K5 (ENSNNAG00000002163)	MAP7 (ENSNNAG00000002218) ##21	ENSNNAG00000000006	BCLAF1 (ENSNNAG00000000012) ##22	MTFR2 (ENSNNAG00000000015)	PDE7B (ENSNNAG00000000019)	ENSNNAG00000000023	AHI1 (ENSNNAG00000000029)	MYB (ENSNNAG00000000035)	HBS1L (ENSNNAG00000000042)	ALDH8A1 (ENSNNAG00000000044)	SGK1 (ENSNNAG00000000046)	SLC2A12 (ENSNNAG00000000051)	TBPL1 (ENSNNAG00000000054)	TCF21 (ENSNNAG00000000058)	EYA4 (ENSNNAG00000000061)	RPS12 (ENSNNAG00000000063)	SLC18B1 (ENSNNAG00000000069)	ENSNNAG00000000072
Elapidae_a	ANCESTRAL SPECIES	34	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00940000160083	ENSGT00940000157264.a	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.d.l
Blue-lipped sea krait	MODERN SPECIES	862													MAP3K5 (ENSLLTG00000002349)	MAP7 (ENSLLTG00000002292) ##21	ENSLLTG00000002276	BCLAF1 (ENSLLTG00000002254) ##22	MTFR2 (ENSLLTG00000002244)	PDE7B (ENSLLTG00000002238)
Acanthophiinae	ANCESTRAL SPECIES	34	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00990000211691	ENSGT00940000160083	ENSGT00940000157264.a	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00940000173986
Mainland tiger snake	MODERN SPECIES	14	HEBP2 (ENSNSUG00000009901)	ARFGEF3 (ENSNSUG00000009900)	ENSNSUG00000009899	ENSNSUG00000009896	TNFAIP3 (ENSNSUG00000009847)	OLIG3 (ENSNSUG00000009846)	ENSNSUG00000009845	ENSNSUG00000009844	SLC35D3 (ENSNSUG00000009843)	PEX7 (ENSNSUG00000009842)	ENSNSUG00000009841	ENSNSUG00000009840	ENSNSUG00000009839	MAP7 (ENSNSUG00000009838) ##21	ENSNSUG00000009837	BCLAF1 (ENSNSUG00000009836) ##22	MTFR2 (ENSNSUG00000009835)	PDE7B (ENSNSUG00000009834)	ENSNSUG00000009833	AHI1 (ENSNSUG00000009832)	MYB (ENSNSUG00000009410)	ENSNSUG00000009409	HBS1L (ENSNSUG00000007992)	ALDH8A1 (ENSNSUG00000007986)	ENSNSUG00000007973	SGK1 (ENSNSUG00000007972)	SLC2A12 (ENSNSUG00000007970)	TBPL1 (ENSNSUG00000007969)	TCF21 (ENSNSUG00000007968)	EYA4 (ENSNSUG00000007953)	RPS12 (ENSNSUG00000007948)
Eastern brown snake	MODERN SPECIES	28	ECT2L (ENSPTXG00000003660)	CCDC28A (ENSPTXG00000003658)	NHSL1 (ENSPTXG00000003654)	HEBP2 (ENSPTXG00000003652)	ARFGEF3 (ENSPTXG00000003641)	PERP (ENSPTXG00000003638)	ENSPTXG00000003637	TNFAIP3 (ENSPTXG00000003634)	OLIG3 (ENSPTXG00000003632)	ENSPTXG00000003631	SLC35D3 (ENSPTXG00000003629)	ENSPTXG00000003626	MAP3K5 (ENSPTXG00000003600)	MAP7 (ENSPTXG00000009806) ##21	ENSPTXG00000009805	BCLAF1 (ENSPTXG00000009804) ##22	PDE7B (ENSPTXG00000009803)	AHI1 (ENSPTXG00000009802)	ENSPTXG00000009801	ENSPTXG00000009800	HBS1L (ENSPTXG00000009799)	ALDH8A1 (ENSPTXG00000009798)	ENSPTXG00000009797	SGK1 (ENSPTXG00000009796)	SLC2A12 (ENSPTXG00000009795)	TBPL1 (ENSPTXG00000009794)	TCF21 (ENSPTXG00000009793)	EYA4 (ENSPTXG00000009792)	RPS12 (ENSPTXG00000009788)	SLC18B1 (ENSPTXG00000009787)	ENSPTXG00000009786
Lizard	MODERN SPECIES	814	NHSL1 (ENSACAG00000016804)	HEBP2 (ENSACAG00000016816)	ARFGEF3 (ENSACAG00000016819)	ENSACAG00000039582	ENSACAG00000038729	ENSACAG00000016852	ENSACAG00000044884	ENSACAG00000035269	TNFAIP3 (ENSACAG00000016855)	ENSACAG00000028387	ENSACAG00000028065	SLC35D3 (ENSACAG00000016914)	PEX7 (ENSACAG00000016918)	MAP3K5 (ENSACAG00000016923)	MAP7 (ENSACAG00000016994) ##21	BCLAF1 (ENSACAG00000017011) ##22	ENSACAG00000034620	ENSACAG00000017033	PDE7B (ENSACAG00000017035)	ENSACAG00000035045	ENSACAG00000042528	AHI1 (ENSACAG00000009806)	MYB (ENSACAG00000009861)	ENSACAG00000040508	HBS1L (ENSACAG00000010120)	ALDH8A1 (ENSACAG00000010204)	SGK1 (ENSACAG00000010226)	SLC2A12 (ENSACAG00000010313)	TCF21 (ENSACAG00000010325)	EYA4 (ENSACAG00000010346)	ENSACAG00000042105
Laterata	ANCESTRAL SPECIES	4	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000173986	ENSGT00390000018318.u.b.a.a	ENSGT00940000156674
Common wall lizard	MODERN SPECIES	11	HEBP2 (ENSPMRG00000004720)	ARFGEF3 (ENSPMRG00000004701)	ENSPMRG00000004685	ENSPMRG00000004677	TNFAIP3 (ENSPMRG00000004670)	OLIG3 (ENSPMRG00000004665)	ENSPMRG00000004656	IL20RA (ENSPMRG00000004637)	SLC35D3 (ENSPMRG00000004628)	PEX7 (ENSPMRG00000004619)	MAP3K5 (ENSPMRG00000004592)	ENSPMRG00000004584	ENSPMRG00000004581	MAP7 (ENSPMRG00000004562) ##21	ENSPMRG00000004544	BCLAF1 (ENSPMRG00000004526) ##22	MTFR2 (ENSPMRG00000004501)	ENSPMRG00000004495	PDE7B (ENSPMRG00000004470)	ENSPMRG00000004408	MYB (ENSPMRG00000004373)	HBS1L (ENSPMRG00000004367)	ALDH8A1 (ENSPMRG00000004364)	ENSPMRG00000004360	SGK1 (ENSPMRG00000004357)	SLC2A12 (ENSPMRG00000004353)	TBPL1 (ENSPMRG00000004347)	TCF21 (ENSPMRG00000004342)	EYA4 (ENSPMRG00000004306)	ENSPMRG00000004265	SLC18B1 (ENSPMRG00000004238)
Argentine black and white tegu	MODERN SPECIES	2	ECT2L (ENSSMRG00000001050)	CCDC28A (ENSSMRG00000001081)	NHSL1 (ENSSMRG00000001174)	HEBP2 (ENSSMRG00000001199)	ARFGEF3 (ENSSMRG00000001249)	ENSSMRG00000001276	ENSSMRG00000001281	TNFAIP3 (ENSSMRG00000001286)	OLIG3 (ENSSMRG00000001319)	ENSSMRG00000001320	IFNGR1 (ENSSMRG00000001420)	SLC35D3 (ENSSMRG00000001426)	PEX7 (ENSSMRG00000001467)	MAP3K5 (ENSSMRG00000001499)	MAP7 (ENSSMRG00000001536) ##21	BCLAF1 (ENSSMRG00000001636) ##22	ENSSMRG00000001660	MTFR2 (ENSSMRG00000001661)	PDE7B (ENSSMRG00000001688)	AHI1 (ENSSMRG00000001768)	MYB (ENSSMRG00000001833)	HBS1L (ENSSMRG00000001904)	ALDH8A1 (ENSSMRG00000001931)	SGK1 (ENSSMRG00000001940)	SLC2A12 (ENSSMRG00000001963)	TBPL1 (ENSSMRG00000001966)	TCF21 (ENSSMRG00000001971)	EYA4 (ENSSMRG00000002159)	RPS12 (ENSSMRG00000002196)	ENSSMRG00000002204	ENSSMRG00000002207
tuatara	MODERN SPECIES	673						ENSSPUG00000011807	ENSSPUG00000011820	TNFAIP3 (ENSSPUG00000011879)	OLIG3 (ENSSPUG00000011903)	ENSSPUG00000011920	SLC35D3 (ENSSPUG00000011941)	ENSSPUG00000011953	MAP3K5 (ENSSPUG00000011975)	MAP7 (ENSSPUG00000012018) ##21	ENSSPUG00000012042	BCLAF1 (ENSSPUG00000012092) ##22	PDE7B (ENSSPUG00000012259)	ENSSPUG00000012279	ENSSPUG00000012290	ENSSPUG00000012310	MYB (ENSSPUG00000012329)	HBS1L (ENSSPUG00000012389)	ALDH8A1 (ENSSPUG00000012409)
Anura	ANCESTRAL SPECIES	40	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949.a	ENSGT00950000183163.a.b ##22	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000164496	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674	ENSGT00390000013823.b.a
Leishan spiny toad	MODERN SPECIES	7	OLIG3 (ENSLLEG00000025632)	ENSLLEG00000025653	ENSLLEG00000025754	ENSLLEG00000025771	ENSLLEG00000025779	ENSLLEG00000025827	ENSLLEG00000026040	SLC35D3 (ENSLLEG00000026167)	ENSLLEG00000026200	PEX7 (ENSLLEG00000026217)	ENSLLEG00000026340	ENSLLEG00000026365	MAP3K5 (ENSLLEG00000026418)	MAP7 (ENSLLEG00000026922) ##21	ENSLLEG00000027316	BCLAF1 (ENSLLEG00000027482) ##22	MTFR2 (ENSLLEG00000027567)	ENSLLEG00000027680	ENSLLEG00000027702	MYB (ENSLLEG00000027735)	ENSLLEG00000027841	ALDH8A1 (ENSLLEG00000027952)	ENSLLEG00000005050	TBPL1 (ENSLLEG00000005117)	ENSLLEG00000005130	ENSLLEG00000005139	ERO1B (ENSLLEG00000005181)	GPR137B (ENSLLEG00000005265)	ENSLLEG00000005311	ENSLLEG00000005316	ENSLLEG00000005328
Frog	MODERN SPECIES	5	ENSXETG00000047644	acta1 (ENSXETG00000021417)	sprtn (ENSXETG00000021416)	egln1 (ENSXETG00000021414)	tsnax (ENSXETG00000026152)	exoc8 (ENSXETG00000021410)	sf3b5 (ENSXETG00000044607)	tab2 (ENSXETG00000021389)	ENSXETG00000040965	ppil4 (ENSXETG00000021382)	ENSXETG00000047262	lats1 (ENSXETG00000012033)	nup43 (ENSXETG00000016373)	ENSXETG00000042216	pex7 (ENSXETG00000027656)	bclaf1 (ENSXETG00000033794) ##22	ENSXETG00000037653	ENSXETG00000040976	ENSXETG00000045148	map7 (ENSXETG00000002479) ##21	ENSXETG00000042360	map3k5 (ENSXETG00000002476)	ENSXETG00000045567	ENSXETG00000048390	ENSXETG00000037949	ust (ENSXETG00000040210)	ENSXETG00000041422	sash1 (ENSXETG00000010717)	ENSXETG00000043848	ENSXETG00000049241	mrps36 (ENSXETG00000027658)
Coelacanth	MODERN SPECIES	1782															MAP7 (ENSLACG00000001292) ##21	BCLAF1 (ENSLACG00000006728) ##22	armc1l (ENSLACG00000008097)	ENSLACG00000022165	PDE7B (ENSLACG00000009480)
Actinopterygii	ANCESTRAL SPECIES	69	ENSGT00940000167198	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674	ENSGT00940000171557
Neopterygii	ANCESTRAL SPECIES	88					ENSGT00940000155086.A	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a ##21	ENSGT00940000167949	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000156674	ENSGT00940000165353
Osteoglossocephalai	ANCESTRAL SPECIES	183							ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000165353	ENSGT00940000159157	ENSGT00560000077266.a
Osteoglossiformes	ANCESTRAL SPECIES	16					ENSGT00940000153804.A	ENSGT00940000155086.A.h	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##21	ENSGT00950000183163.a.b ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248.oc.b	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000156399.vb	ENSGT00940000164496.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000165353
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	82	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)	sod2 (ENSPKIG00000022722)	wtap (ENSPKIG00000022748)	wtap (ENSPKIG00000022767)	acat2 (ENSPKIG00000022793)	tcp1 (ENSPKIG00000022823)	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)	MAP7 (ENSPKIG00000022970) ##21	BCLAF1 (ENSPKIG00000023059) ##22	ENSPKIG00000023071 ##22	armc1l (ENSPKIG00000023085)	mtfr2 (ENSPKIG00000023105)	PDE7B (ENSPKIG00000023116)	MYB (ENSPKIG00000023135)	hbs1l (ENSPKIG00000023171)	aldh8a1 (ENSPKIG00000023217)	ENSPKIG00000023230	SGK1 (ENSPKIG00000023267)	laptm4a (ENSPKIG00000023354)	matn3a (ENSPKIG00000023389)	ttc32 (ENSPKIG00000023398)	zpax1 (ENSPKIG00000023416)	kcns3b (ENSPKIG00000023444)
P. kingsleyae	MODERN SPECIES	82	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)	sod2 (ENSPKIG00000022722)	wtap (ENSPKIG00000022748)	wtap (ENSPKIG00000022767)	acat2 (ENSPKIG00000022793)	tcp1 (ENSPKIG00000022823)	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)	MAP7 (ENSPKIG00000022970) ##21	BCLAF1 (ENSPKIG00000023059) ##22	ENSPKIG00000023071 ##22	armc1l (ENSPKIG00000023085)	mtfr2 (ENSPKIG00000023105)	PDE7B (ENSPKIG00000023116)	MYB (ENSPKIG00000023135)	hbs1l (ENSPKIG00000023171)	aldh8a1 (ENSPKIG00000023217)	ENSPKIG00000023230	SGK1 (ENSPKIG00000023267)	laptm4a (ENSPKIG00000023354)	matn3a (ENSPKIG00000023389)	ttc32 (ENSPKIG00000023398)	zpax1 (ENSPKIG00000023416)	kcns3b (ENSPKIG00000023444)
Asian bonytongue	MODERN SPECIES		EIF2AK3 (ENSSFOG00015018609)	zfyve28 (ENSSFOG00015027771)	foxi2 (ENSSFOG00015026749)	drc1 (ENSSFOG00015018560)	OTOF (ENSSFOG00015018253)	sod2 (ENSSFOG00015018195)	wtap (ENSSFOG00015032191)	acat2 (ENSSFOG00015018150)	tcp1 (ENSSFOG00015018108)	ENSSFOG00015018085	PLEKHG1 (ENSSFOG00015024237)	iyd (ENSSFOG00015018043)	ppp1r14c (ENSSFOG00015018031)	ENSSFOG00015018022	MAP7 (ENSSFOG00015017910) ##21	BCLAF1 (ENSSFOG00015017853) ##22	armc1l (ENSSFOG00015017825)	mtfr2 (ENSSFOG00015017810)	MYB (ENSSFOG00015017613)	hbs1l (ENSSFOG00015017544)	aldh8a1 (ENSSFOG00015033318)	sgk1 (ENSSFOG00015017351)	slc2a12 (ENSSFOG00015017339)	tbpl1 (ENSSFOG00015017311)	tcf21 (ENSSFOG00015024810)	eya4 (ENSSFOG00015017200)	rps12 (ENSSFOG00015017146)	ENSSFOG00015024872	sh3bgrl2 (ENSSFOG00015030166)	LCA5 (ENSSFOG00015030512)	HMGN3 (ENSSFOG00015017064)
Spotted gar	MODERN SPECIES	647	agbl5 (ENSLOCG00000016175)	ost4 (ENSLOCG00000017994)	selenoi (ENSLOCG00000016178)	drc1 (ENSLOCG00000016179)	OTOF (ENSLOCG00000016183)	FNDC1 (ENSLOCG00000016185)	sod2 (ENSLOCG00000016188)	wtap (ENSLOCG00000016191)	acat2 (ENSLOCG00000016193)	tcp1 (ENSLOCG00000016197)	PLEKHG1 (ENSLOCG00000016199)	iyd (ENSLOCG00000016202)	ppp1r14c (ENSLOCG00000016203)	MAP7 (ENSLOCG00000016205) ##21	ENSLOCG00000016206	BCLAF1 (ENSLOCG00000016208) ##22	armc1l (ENSLOCG00000016210)	mtfr2 (ENSLOCG00000016211)	PDE7B (ENSLOCG00000016213)	ahi1 (ENSLOCG00000016215)	myb (ENSLOCG00000016218)	hbs1l (ENSLOCG00000016221)	aldh8a1 (ENSLOCG00000016225)	SGK1 (ENSLOCG00000016226)	ENSLOCG00000016227	slc2a12 (ENSLOCG00000016228)	tbpl1 (ENSLOCG00000016230)	tcf21 (ENSLOCG00000016232)	eya4 (ENSLOCG00000016233)	rps12 (ENSLOCG00000016236)	slc18b1 (ENSLOCG00000016237)
Reedfish	MODERN SPECIES	6	enpp1 (ENSECRG00000011769)	ENSECRG00000011803	ENSECRG00000011818	ezra (ENSECRG00000011838)	rsph3 (ENSECRG00000011873)	tagapb (ENSECRG00000011888)	sod2 (ENSECRG00000011913)	wtap (ENSECRG00000011932)	acat2 (ENSECRG00000011958)	tcp1 (ENSECRG00000011980)	PLEKHG1 (ENSECRG00000012027)	iyd (ENSECRG00000012047)	ppp1r14c (ENSECRG00000012056)	MAP7 (ENSECRG00000012118) ##21	ENSECRG00000012212	BCLAF1 (ENSECRG00000012238) ##22	armc1l (ENSECRG00000012261)	mtfr2 (ENSECRG00000012286)	PDE7B (ENSECRG00000012364)	ahi1 (ENSECRG00000012493)	myb (ENSECRG00000012557)	hbs1l (ENSECRG00000012621)	aldh8a1 (ENSECRG00000012650)	NHSL1 (ENSECRG00000012718)	ccdc28a (ENSECRG00000012795)	ECT2L (ENSECRG00000012867)	reps1 (ENSECRG00000012931)	abracl (ENSECRG00000012995)	heca (ENSECRG00000013003)	TXLNB (ENSECRG00000013025)	cited2 (ENSECRG00000013047)
Elephant shark	MODERN SPECIES	1511	ENSCMIG00000016107	eif2b4 (ENSCMIG00000016132)	snx17 (ENSCMIG00000016186)	ENSCMIG00000016194	ENSCMIG00000016200	TNFAIP3 (ENSCMIG00000016215)	ENSCMIG00000016220	ENSCMIG00000016222	ENSCMIG00000016227	ENSCMIG00000016230	SLC35D3 (ENSCMIG00000016233)	pex7 (ENSCMIG00000016246)	MAP3K5 (ENSCMIG00000016309)	ENSCMIG00000016396 ##21	ENSCMIG00000016427	BCLAF1 (ENSCMIG00000016434) ##22	armc1l (ENSCMIG00000016442)	mtfr2 (ENSCMIG00000016447)	PDE7B (ENSCMIG00000016487)	ENSCMIG00000016541	ahi1 (ENSCMIG00000016547)	hbs1l (ENSCMIG00000016586)	MYB (ENSCMIG00000016702)	ENSCMIG00000016801
Gnathostomata	ANCESTRAL SPECIES	640															ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00390000008256	ENSGT00940000159370
Elephant shark	MODERN SPECIES	1505	ENSCMIG00000010392	NHS (ENSCMIG00000010394)	ENSCMIG00000010398	ENSCMIG00000010435	txlng (ENSCMIG00000010483)	syap1 (ENSCMIG00000010525)	ENSCMIG00000010564	ENSCMIG00000010612	GRPR (ENSCMIG00000010665)	ENSCMIG00000010667	ENSCMIG00000010668	pdha1 (ENSCMIG00000010699)	ENSCMIG00000010815	ENSCMIG00000010872	ENSCMIG00000010956 ##21	ENSCMIG00000010970 ##22	ENSCMIG00000010973	SH3KBP1 (ENSCMIG00000010981)	eif1axb (ENSCMIG00000011013)	rps6ka3a (ENSCMIG00000011158)	ENSCMIG00000011304	ARHGAP6 (ENSCMIG00000011315)	MID1 (ENSCMIG00000011336)	ENSCMIG00000011374	clcn4 (ENSCMIG00000011514)	wwc3 (ENSCMIG00000011874)	cldn26 (ENSCMIG00000011920)	ENSCMIG00000011923	SHROOM2 (ENSCMIG00000011927)	ENSCMIG00000011930	LACC1 (ENSCMIG00000011933)
Euteleostomi	ANCESTRAL SPECIES	130	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562
Sarcopterygii	ANCESTRAL SPECIES	117	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01030000235848	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT01100000263512.b.b.a	ENSGT00910000144179.b.a
Tetrapoda	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Amniota	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Sauria	ANCESTRAL SPECIES	2	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Archelosauria	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Archosauria	ANCESTRAL SPECIES	2	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Aves	ANCESTRAL SPECIES		ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Neognathae	ANCESTRAL SPECIES	1	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Neognathae_b	ANCESTRAL SPECIES		ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Neognathae_c	ANCESTRAL SPECIES	4	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Golden eagle	MODERN SPECIES	23	SAT1 (ENSACCG00020003577)	ACOT9 (ENSACCG00020003604)	PRDX4 (ENSACCG00020003641)	ENSACCG00020003657	ENSACCG00020003664	ENSACCG00020003681	PHEX (ENSACCG00020003703)	SMS (ENSACCG00020003730)	MBTPS2 (ENSACCG00020003760)	SMPX (ENSACCG00020003772)	KLHL34 (ENSACCG00020003780)	CNKSR2 (ENSACCG00020003793)	ENSACCG00020003833	EIF1AY (ENSACCG00020003868)	MAP7D2 (ENSACCG00020003899) ##21	BCLAF3 (ENSACCG00020003922) ##22	SH3KBP1 (ENSACCG00020004130)	MAP3K15 (ENSACCG00020004243)	ENSACCG00020004280	ADGRG2 (ENSACCG00020004309)	PHKA2 (ENSACCG00020004342)	PPEF1 (ENSACCG00020004379)	ENSACCG00020004392	CDKL5 (ENSACCG00020004398)	SCML2 (ENSACCG00020004422)	RAI2 (ENSACCG00020004428)
Kakapo	MODERN SPECIES	11	ENSSHBG00005000010	APOO (ENSSHBG00005006240)	SAT1 (ENSSHBG00005006283)	ACOT9 (ENSSHBG00005006343)	PRDX4 (ENSSHBG00005006485)	PTCHD1 (ENSSHBG00005006504)	PHEX (ENSSHBG00005006528)	SMS (ENSSHBG00005006564)	MBTPS2 (ENSSHBG00005006593)	SMPX (ENSSHBG00005006614)	KLHL34 (ENSSHBG00005006628)	CNKSR2 (ENSSHBG00005006684)	RPS6KA3 (ENSSHBG00005007492)	EIF1AY (ENSSHBG00005018079)	MAP7D2 (ENSSHBG00005018085) ##21	BCLAF3 (ENSSHBG00005018091) ##22	SH3KBP1 (ENSSHBG00005018133)	ENSSHBG00005018962	ENSSHBG00005018967	ENSSHBG00005018975	ENSSHBG00005019023	ADGRG2 (ENSSHBG00005019028)	PHKA2 (ENSSHBG00005019048)	ENSSHBG00005019074	ENSSHBG00005019076	CDKL5 (ENSSHBG00005019079)	SCML2 (ENSSHBG00005019081)	RAI2 (ENSSHBG00005019085)	ENSSHBG00005019087	NHS (ENSSHBG00005019088)	REPS2 (ENSSHBG00005019091)
Passeriformes	ANCESTRAL SPECIES	1	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Passeriformes_d	ANCESTRAL SPECIES	1	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Passeriformes_g	ANCESTRAL SPECIES	2	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Medium ground finch	MODERN SPECIES	106													RPS6KA3 (ENSGFOG00000010646)	EIF1AY (ENSGFOG00000010726)	MAP7D2 (ENSGFOG00000010744) ##21	BCLAF3 (ENSGFOG00000010815) ##22	SH3KBP1 (ENSGFOG00000010845)	MAP3K15 (ENSGFOG00000010920)	ENSGFOG00000011142	ADGRG2 (ENSGFOG00000011152)	PHKA2 (ENSGFOG00000011321)	PPEF1 (ENSGFOG00000013473)	RS1 (ENSGFOG00000013477)	CDKL5 (ENSGFOG00000013485)	SCML2 (ENSGFOG00000013508)	ENSGFOG00000013512	NHS (ENSGFOG00000013516)	REPS2 (ENSGFOG00000013518)	RBBP7 (ENSGFOG00000013519)	TXLNG (ENSGFOG00000013522)	SYAP1 (ENSGFOG00000013528)
Passeroidea	ANCESTRAL SPECIES	10	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Zebra finch	MODERN SPECIES		APOO (ENSTGUG00000007280)	SAT1 (ENSTGUG00000007289)	ACOT9 (ENSTGUG00000007308)	PRDX4 (ENSTGUG00000007332)	PTCHD1 (ENSTGUG00000021804)	ENSTGUG00000029682	PHEX (ENSTGUG00000007352)	SMS (ENSTGUG00000007411)	MBTPS2 (ENSTGUG00000007431)	SMPX (ENSTGUG00000020200)	KLHL34 (ENSTGUG00000007449)	CNKSR2 (ENSTGUG00000007450)	RPS6KA3 (ENSTGUG00000007471)	ENSTGUG00000007524	MAP7D2 (ENSTGUG00000007527) ##21	BCLAF3 (ENSTGUG00000007538) ##22	SH3KBP1 (ENSTGUG00000007550)	MAP3K15 (ENSTGUG00000007599)	ENSTGUG00000007653	ADGRG2 (ENSTGUG00000007677)	PHKA2 (ENSTGUG00000007695)	PPEF1 (ENSTGUG00000007736)	RS1 (ENSTGUG00000007765)	CDKL5 (ENSTGUG00000007769)	SCML2 (ENSTGUG00000007781)	ENSTGUG00000007795	NHS (ENSTGUG00000007798)	REPS2 (ENSTGUG00000007806)	RBBP7 (ENSTGUG00000007826)	TXLNG (ENSTGUG00000007846)	SYAP1 (ENSTGUG00000007873)
Common canary	MODERN SPECIES	11	KLHL15 (ENSSCAG00000015664)	APOO (ENSSCAG00000015659)	SAT1 (ENSSCAG00000015656)	ACOT9 (ENSSCAG00000015654)	PRDX4 (ENSSCAG00000015650)	PTCHD1 (ENSSCAG00000015647)	PHEX (ENSSCAG00000015644)	SMS (ENSSCAG00000015640)	MBTPS2 (ENSSCAG00000015638)	SMPX (ENSSCAG00000015635)	KLHL34 (ENSSCAG00000015632)	CNKSR2 (ENSSCAG00000015514)	RPS6KA3 (ENSSCAG00000014654)	ENSSCAG00000014338	MAP7D2 (ENSSCAG00000014326) ##21	BCLAF3 (ENSSCAG00000014318) ##22	SH3KBP1 (ENSSCAG00000014257)	MAP3K15 (ENSSCAG00000013989)	ENSSCAG00000013917	ADGRG2 (ENSSCAG00000013895)	PHKA2 (ENSSCAG00000013844)	PPEF1 (ENSSCAG00000013826)	ENSSCAG00000013821	CDKL5 (ENSSCAG00000013673)	SCML2 (ENSSCAG00000013642)	ENSSCAG00000013632	NHS (ENSSCAG00000013628)	REPS2 (ENSSCAG00000013615)	RBBP7 (ENSSCAG00000013609)	TXLNG (ENSSCAG00000013606)	SYAP1 (ENSSCAG00000013603)
Flycatcher	MODERN SPECIES		APOO (ENSFALG00000028224)	SAT1 (ENSFALG00000024467)	ACOT9 (ENSFALG00000004154)	PRDX4 (ENSFALG00000026461)	PTCHD1 (ENSFALG00000004172)	PHEX (ENSFALG00000004174)	SMS (ENSFALG00000004178)	SMPX (ENSFALG00000004189)	KLHL34 (ENSFALG00000004192)	CNKSR2 (ENSFALG00000004197)	RPS6KA3 (ENSFALG00000004203)	EIF1AX (ENSFALG00000023239)	ENSFALG00000026702	ENSFALG00000026313 ##21	ENSFALG00000025070 ##21	BCLAF3 (ENSFALG00000004216) ##22	SH3KBP1 (ENSFALG00000004232)	MAP3K15 (ENSFALG00000004253)	ENSFALG00000004262	ADGRG2 (ENSFALG00000004273)	PHKA2 (ENSFALG00000004289)	PPEF1 (ENSFALG00000004294)	ENSFALG00000004306	CDKL5 (ENSFALG00000004310)	SCML2 (ENSFALG00000004312)	ENSFALG00000026988	NHS (ENSFALG00000004320)	REPS2 (ENSFALG00000004325)	RBBP7 (ENSFALG00000004332)	TXLNG (ENSFALG00000004337)	SYAP1 (ENSFALG00000004339)
Great tit	MODERN SPECIES		SAT1 (ENSPMJG00000011225)	ACOT9 (ENSPMJG00000011230)	PRDX4 (ENSPMJG00000011231)	ENSPMJG00000011233	ENSPMJG00000011234	ENSPMJG00000011235	PHEX (ENSPMJG00000011239)	SMS (ENSPMJG00000011240)	MBTPS2 (ENSPMJG00000011282)	SMPX (ENSPMJG00000011283)	ENSPMJG00000011284	CNKSR2 (ENSPMJG00000011285)	RPS6KA3 (ENSPMJG00000011290)	EIF1AX (ENSPMJG00000011291)	MAP7D2 (ENSPMJG00000011293) ##21	BCLAF3 (ENSPMJG00000011294) ##22	SH3KBP1 (ENSPMJG00000011295)	MAP3K15 (ENSPMJG00000011298)	ENSPMJG00000011299	ADGRG2 (ENSPMJG00000011302)	PHKA2 (ENSPMJG00000011304)	PPEF1 (ENSPMJG00000011305)	ENSPMJG00000011306	CDKL5 (ENSPMJG00000011307)	SCML2 (ENSPMJG00000011308)	RAI2 (ENSPMJG00000011309)	ENSPMJG00000011312	ENSPMJG00000011313	NHS (ENSPMJG00000011314)	REPS2 (ENSPMJG00000011320)	RBBP7 (ENSPMJG00000011322)
Galloanserae	ANCESTRAL SPECIES	1	ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Anatidae	ANCESTRAL SPECIES	58														ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Pink-footed goose	MODERN SPECIES	42														EIF1AX (ENSABRG00000002642)	MAP7D2 (ENSABRG00000002715) ##21	BCLAF3 (ENSABRG00000002929) ##22	SH3KBP1 (ENSABRG00000003049)	MAP3K15 (ENSABRG00000005057)	ENSABRG00000005131	ENSABRG00000005147	ENSABRG00000005155	ADGRG2 (ENSABRG00000005170)	PHKA2 (ENSABRG00000005409)	ENSABRG00000010075	RS1 (ENSABRG00000010078)	CDKL5 (ENSABRG00000010091)	SCML2 (ENSABRG00000010136)	ENSABRG00000010171	NHS (ENSABRG00000010185)	REPS2 (ENSABRG00000010203)	RBBP7 (ENSABRG00000010224)
Duck	MODERN SPECIES		UBASH3A (ENSAPLG00000008138)	TMPRSS3 (ENSAPLG00000008634)	TFF2 (ENSAPLG00000020197)	ABCG1 (ENSAPLG00000008841)	ENSAPLG00000002409	ZBTB21 (ENSAPLG00000000767)	C2CD2 (ENSAPLG00000001983)	PRDM15 (ENSAPLG00000001239)	ENSAPLG00000001186	RIPK4 (ENSAPLG00000016253)	TMPRSS2 (ENSAPLG00000016160)	MX1 (ENSAPLG00000015976)	FAM3B (ENSAPLG00000015920)	EIF1AX (ENSAPLG00000029362)	MAP7D2 (ENSAPLG00000005077) ##21	BCLAF3 (ENSAPLG00000005332) ##22	SH3KBP1 (ENSAPLG00000007164)	MAP3K15 (ENSAPLG00000007410)	ENSAPLG00000008450	ADGRG2 (ENSAPLG00000008909)	PHKA2 (ENSAPLG00000009522)	PPEF1 (ENSAPLG00000010050)	RS1 (ENSAPLG00000010522)	CDKL5 (ENSAPLG00000010656)	SCML2 (ENSAPLG00000010725)	RAI2 (ENSAPLG00000026209)	ENSAPLG00000030010	NHS (ENSAPLG00000011104)	REPS2 (ENSAPLG00000011221)	RBBP7 (ENSAPLG00000011785)	TXLNG (ENSAPLG00000012324)
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Phasianidae_b	ANCESTRAL SPECIES		ENSGT00940000159116	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Chicken	MODERN SPECIES		KLHL15 (ENSGALG00010003101)	APOO (ENSGALG00010003125)	SAT1 (ENSGALG00010003133)	ACOT9 (ENSGALG00010003193)	PRDX4 (ENSGALG00010003214)	ENSGALG00010003247	PHEX (ENSGALG00010003252)	SMS (ENSGALG00010003268)	MBTPS2 (ENSGALG00010003275)	SMPX (ENSGALG00010001885)	KLHL34 (ENSGALG00010001890)	CNKSR2 (ENSGALG00010001918)	RPS6KA3 (ENSGALG00010002592)	EIF1AX (ENSGALG00010002653)	MAP7D2 (ENSGALG00010002765) ##21	CXorf23 (ENSGALG00010002790) ##22	SH3KBP1 (ENSGALG00010002809)	ENSGALG00010002869	MAP3K15 (ENSGALG00010002883)	PDHA2 (ENSGALG00010002929)	ADGRG2 (ENSGALG00010002957)	PHKA2 (ENSGALG00010003002)	PPEF1 (ENSGALG00010003030)	RS1 (ENSGALG00010003040)	CDKL5 (ENSGALG00010002161)	SCML2 (ENSGALG00010002345)	RAI2 (ENSGALG00010002365)	ENSGALG00010002370	NHS (ENSGALG00010002379)	REPS2 (ENSGALG00010002391)	ENSGALG00010002394
Turkey	MODERN SPECIES		ENSMGAG00000018381	ENSMGAG00000014681	ENSMGAG00000021746	ENSMGAG00000014675	ENSMGAG00000014674	ENSMGAG00000014671	ENSMGAG00000014672	ENSMGAG00000014673	ENSMGAG00000016590	ADGRG2 (ENSMGAG00000014670)	ENSMGAG00000021924	ENSMGAG00000014669	ENSMGAG00000014668	ENSMGAG00000014667	ENSMGAG00000018972	ENSMGAG00000014666 ##22	ENSMGAG00000014665 ##21	ENSMGAG00000014664	ENSMGAG00000014663	ENSMGAG00000020398	ENSMGAG00000020891	ENSMGAG00000014662	ENSMGAG00000014661	ENSMGAG00000014659	ENSMGAG00000014657	ENSMGAG00000014656	ENSMGAG00000020081	ENSMGAG00000018512	ENSMGAG00000022195	ENSMGAG00000014655	ENSMGAG00000014653
Japanese quail	MODERN SPECIES		SMS (ENSCJPG00005017200)	PHEX (ENSCJPG00005017203)	PTCHD1 (ENSCJPG00005017258)	PRDX4 (ENSCJPG00005017260)	ACOT9 (ENSCJPG00005017261)	SAT1 (ENSCJPG00005017262)	APOO (ENSCJPG00005017263)	KLHL15 (ENSCJPG00005017264)	ENSCJPG00005017265	ENSCJPG00005017267	ENSCJPG00005017268	PDK3 (ENSCJPG00005017269)	PCYT1B (ENSCJPG00005017302)	POLA1 (ENSCJPG00005017303)	ARX (ENSCJPG00005017313)	BCLAF3 (ENSCJPG00005017348) ##22	SH3KBP1 (ENSCJPG00005017358)	MAP3K15 (ENSCJPG00005017843)	ENSCJPG00005017845	ADGRG2 (ENSCJPG00005017848)	PHKA2 (ENSCJPG00005017878)	PPEF1 (ENSCJPG00005017880)	RS1 (ENSCJPG00005017881)	CDKL5 (ENSCJPG00005017882)	SCML2 (ENSCJPG00005017884)	RAI2 (ENSCJPG00005017887)	ENSCJPG00005017888	NHS (ENSCJPG00005017889)	REPS2 (ENSCJPG00005017890)	ENSCJPG00005017891	TXLNG (ENSCJPG00005017892)
African ostrich	MODERN SPECIES	411													RPS6KA3 (ENSSCUG00000007740)	EIF1AY (ENSSCUG00000007738)	MAP7D2 (ENSSCUG00000007734) ##21	BCLAF3 (ENSSCUG00000007724) ##22	SH3KBP1 (ENSSCUG00000007720)	MAP3K15 (ENSSCUG00000007712)	ENSSCUG00000007704	ADGRG2 (ENSSCUG00000007691)	PHKA2 (ENSSCUG00000007679)	PPEF1 (ENSSCUG00000007662)	ENSSCUG00000007656	CDKL5 (ENSSCUG00000007652)	SCML2 (ENSSCUG00000007645)	ENSSCUG00000007641	ENSSCUG00000007636	NHS (ENSSCUG00000007632)	REPS2 (ENSSCUG00000007629)	RBBP7 (ENSSCUG00000007625)	TXLNG (ENSSCUG00000007623)
Australian saltwater crocodile	MODERN SPECIES	27	APOO (ENSCPRG00005003918)	SAT1 (ENSCPRG00005003925)	ACOT9 (ENSCPRG00005003932)	PRDX4 (ENSCPRG00005003960)	ENSCPRG00005003968	ENSCPRG00005003970	PHEX (ENSCPRG00005003998)	SMS (ENSCPRG00005004044)	MBTPS2 (ENSCPRG00005004052)	SMPX (ENSCPRG00005004068)	KLHL34 (ENSCPRG00005004072)	CNKSR2 (ENSCPRG00005004095)	RPS6KA3 (ENSCPRG00005004126)	EIF1AY (ENSCPRG00005004137)	MAP7D2 (ENSCPRG00005004181) ##21	BCLAF3 (ENSCPRG00005004205) ##22	SH3KBP1 (ENSCPRG00005004278)	MAP3K15 (ENSCPRG00005004759)	ENSCPRG00005004929	ADGRG2 (ENSCPRG00005004970)	PHKA2 (ENSCPRG00005005007)	PPEF1 (ENSCPRG00005005055)	ENSCPRG00005005070	CDKL5 (ENSCPRG00005005093)	ENSCPRG00005005124	SCML2 (ENSCPRG00005005129)	RAI2 (ENSCPRG00005005138)	ENSCPRG00005005174	NHS (ENSCPRG00005005178)	REPS2 (ENSCPRG00005005208)	RBBP7 (ENSCPRG00005005235)
Cryptodira	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES	1	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.a	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b.a ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Emydidae	ANCESTRAL SPECIES	28	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b.a ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Three-toed box turtle	MODERN SPECIES	6	ENSTMTG00000021061	ENSTMTG00000021066	ENSTMTG00000020939	ENSTMTG00000020913	ENSTMTG00000020909	ENSTMTG00000020902	ENSTMTG00000020869	ENSTMTG00000020859	ENSTMTG00000020853	ENSTMTG00000020839	ENSTMTG00000020818	ENSTMTG00000020397	ENSTMTG00000013119	ENSTMTG00000012505	ENSTMTG00000012414 ##21	ENSTMTG00000012334 ##22	ENSTMTG00000012121	ENSTMTG00000010871	ENSTMTG00000010673	ENSTMTG00000010552	ENSTMTG00000008930	ENSTMTG00000008539	ENSTMTG00000008487	ENSTMTG00000008455	ENSTMTG00000008358	ENSTMTG00000008340	ENSTMTG00000008320	ENSTMTG00000008268	ENSTMTG00000008248	ENSTMTG00000008218	ENSTMTG00000008203
painted turtle	MODERN SPECIES	736												ENSCPBG00000007197	NHS (ENSCPBG00000007162)	ENSCPBG00000007124 ##21	ENSCPBG00000007121 ##21	BCLAF3 (ENSCPBG00000007103) ##22	SH3KBP1 (ENSCPBG00000007082)	MAP3K15 (ENSCPBG00000007064)	ENSCPBG00000007047	ENSCPBG00000007039	ADGRG2 (ENSCPBG00000007007)	PHKA2 (ENSCPBG00000006946)	PPEF1 (ENSCPBG00000006896)	RS1 (ENSCPBG00000006888)	CDKL5 (ENSCPBG00000006856)	SCML2 (ENSCPBG00000006826)	ENSCPBG00000006822	ENSCPBG00000006809	ENSCPBG00000006795	KLHL15 (ENSCPBG00000006784)	ENSCPBG00000006769
Testudinidae	ANCESTRAL SPECIES		ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.a	ENSGT01030000235848	ENSGT00390000008256.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b.a ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Goode s thornscrub tortoise	MODERN SPECIES		APOO (ENSGEVG00005003193)	SAT1 (ENSGEVG00005003187)	ACOT9 (ENSGEVG00005003156)	PRDX4 (ENSGEVG00005003135)	ENSGEVG00005003126	ENSGEVG00005003120	PHEX (ENSGEVG00005003058)	SMS (ENSGEVG00005003013)	MBTPS2 (ENSGEVG00005002992)	SMPX (ENSGEVG00005002981)	KLHL34 (ENSGEVG00005002967)	CNKSR2 (ENSGEVG00005002617)	RPS6KA3 (ENSGEVG00005002477)	EIF1AY (ENSGEVG00005002462)	MAP7D2 (ENSGEVG00005002440) ##21	BCLAF3 (ENSGEVG00005002402) ##22	SH3KBP1 (ENSGEVG00005002292)	MAP3K15 (ENSGEVG00005002034)	ENSGEVG00005001952	ENSGEVG00005001923	ADGRG2 (ENSGEVG00005001856)	PHKA2 (ENSGEVG00005001251)	PPEF1 (ENSGEVG00005000898)	RS1 (ENSGEVG00005000877)	CDKL5 (ENSGEVG00005000847)	SCML2 (ENSGEVG00005000816)	RAI2 (ENSGEVG00005000801)	ENSGEVG00005000765	NHS (ENSGEVG00005000729)	REPS2 (ENSGEVG00005000696)	RBBP7 (ENSGEVG00005000675)
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00950000183163.b.b ##22
Testudinidae	ANCESTRAL SPECIES																	ENSGT00950000183163.b.b ##22
Abingdon island giant tortoise	MODERN SPECIES	585												ZFPM2 (ENSCABG00000001690)	ENSCABG00000001679	EIF1AY (ENSCABG00000001672)	MAP7D2 (ENSCABG00000001649) ##21	ENSCABG00000001643 ##22	SH3KBP1 (ENSCABG00000001638)	MAP3K15 (ENSCABG00000001631)	ENSCABG00000001623
Emydidae	ANCESTRAL SPECIES																	ENSGT00950000183163.b.b ##22
Three-toed box turtle	MODERN SPECIES	5	ENSTMTG00000018554	ENSTMTG00000018175	ENSTMTG00000018148	ENSTMTG00000018125	ENSTMTG00000018119	ENSTMTG00000018114	ENSTMTG00000018074	ENSTMTG00000018067	ENSTMTG00000017886	ENSTMTG00000017855	ENSTMTG00000017830	ENSTMTG00000016148	ENSTMTG00000005717	ENSTMTG00000005010	ENSTMTG00000004847 ##21	ENSTMTG00000004814 ##22	ENSTMTG00000004705	ENSTMTG00000004603	ENSTMTG00000004440	ENSTMTG00000004327	ENSTMTG00000003024	ENSTMTG00000002941	ENSTMTG00000002935	ENSTMTG00000002920	ENSTMTG00000002891	ENSTMTG00000002881	ENSTMTG00000002860	ENSTMTG00000002850	ENSTMTG00000002839	ENSTMTG00000002824	ENSTMTG00000002782
Chinese turtle	MODERN SPECIES	531													RPS6KA3 (ENSPSIG00000009372)	EIF1AY (ENSPSIG00000004858)	MAP7D2 (ENSPSIG00000005169) ##21	BCLAF3 (ENSPSIG00000006510) ##22
Lepidosauria	ANCESTRAL SPECIES	4	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT01040000244463	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Episquamata	ANCESTRAL SPECIES	2	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.j	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662
Laterata	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.i.b	ENSGT00940000159370.j	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662
Common wall lizard	MODERN SPECIES	12	ENSPMRG00000004411	SAT1 (ENSPMRG00000004420)	ACOT9 (ENSPMRG00000004440)	PRDX4 (ENSPMRG00000004476)	PTCHD1 (ENSPMRG00000004487)	PHEX (ENSPMRG00000004498)	SMS (ENSPMRG00000004545)	MBTPS2 (ENSPMRG00000004556)	SMPX (ENSPMRG00000004564)	KLHL34 (ENSPMRG00000004569)	CNKSR2 (ENSPMRG00000004735)	ENSPMRG00000005565	RPS6KA3 (ENSPMRG00000005784)	ENSPMRG00000006905	MAP7D2 (ENSPMRG00000006925) ##21	ENSPMRG00000006968 ##22	SH3KBP1 (ENSPMRG00000007049)	MAP3K15 (ENSPMRG00000007498)	ENSPMRG00000000391	ADGRG2 (ENSPMRG00000000590)	PHKA2 (ENSPMRG00000002101)	PPEF1 (ENSPMRG00000006648)	ENSPMRG00000006751	CDKL5 (ENSPMRG00000006763)	SCML2 (ENSPMRG00000006773)	RAI2 (ENSPMRG00000006796)	ENSPMRG00000006808	NHS (ENSPMRG00000006823)	REPS2 (ENSPMRG00000006859)	TXLNG (ENSPMRG00000006878)	CTPS2 (ENSPMRG00000006901)
Argentine black and white tegu	MODERN SPECIES		ENSSMRG00000022829	APOO (ENSSMRG00000022828)	SAT1 (ENSSMRG00000022827)	ACOT9 (ENSSMRG00000022826)	PRDX4 (ENSSMRG00000022825)	PTCHD1 (ENSSMRG00000022824)	PHEX (ENSSMRG00000022822)	SMS (ENSSMRG00000022821)	MBTPS2 (ENSSMRG00000022820)	SMPX (ENSSMRG00000022819)	ENSSMRG00000022818	CNKSR2 (ENSSMRG00000022817)	ENSSMRG00000022727	EIF1AX (ENSSMRG00000022713)	MAP7D2 (ENSSMRG00000022712) ##21	BCLAF3 (ENSSMRG00000022709) ##22	SH3KBP1 (ENSSMRG00000022685)	MAP3K15 (ENSSMRG00000022620)	ENSSMRG00000022619	ADGRG2 (ENSSMRG00000022616)	PHKA2 (ENSSMRG00000022615)	PPEF1 (ENSSMRG00000022614)	RS1 (ENSSMRG00000022613)	CDKL5 (ENSSMRG00000022612)	SCML2 (ENSSMRG00000022611)	RAI2 (ENSSMRG00000022610)	ENSSMRG00000022609	ENSSMRG00000022608	NHS (ENSSMRG00000022606)	REPS2 (ENSSMRG00000022604)	TXLNG (ENSSMRG00000022603)
Toxicofera	ANCESTRAL SPECIES	2	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.j	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662	ENSGT00910000144179.b.a
Elapidae	ANCESTRAL SPECIES	13	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.j.b	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.a	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662	ENSGT00910000144179.b.a
Elapidae_a	ANCESTRAL SPECIES	16	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.j.b	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.a	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662	ENSGT00910000144179.b.a
Acanthophiinae	ANCESTRAL SPECIES	21	ENSGT00940000167353	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370.j.b	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.a	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000155463	ENSGT00390000007662	ENSGT00910000144179.b.a
Mainland tiger snake	MODERN SPECIES	67	SAT1 (ENSNSUG00000011944)	ACOT9 (ENSNSUG00000011945)	PRDX4 (ENSNSUG00000011946)	ENSNSUG00000011947	ENSNSUG00000011948	PHEX (ENSNSUG00000011949)	SMS (ENSNSUG00000011950)	MBTPS2 (ENSNSUG00000011951)	SMPX (ENSNSUG00000011952)	KLHL34 (ENSNSUG00000011953)	CNKSR2 (ENSNSUG00000011963)	RPS6KA3 (ENSNSUG00000012329)	ENSNSUG00000012384	ENSNSUG00000012386 ##21	ENSNSUG00000012387 ##21	BCLAF3 (ENSNSUG00000012389) ##22	SH3KBP1 (ENSNSUG00000012391)	MAP3K15 (ENSNSUG00000012661)	ENSNSUG00000012740	ADGRG2 (ENSNSUG00000012742)	ENSNSUG00000012744	PPEF1 (ENSNSUG00000012746)	RS1 (ENSNSUG00000012776)	CDKL5 (ENSNSUG00000012777)	SCML2 (ENSNSUG00000012778)	RAI2 (ENSNSUG00000012779)	NHS (ENSNSUG00000012782)	REPS2 (ENSNSUG00000012787)	TXLNG (ENSNSUG00000012789)	CTPS2 (ENSNSUG00000012793)	SYAP1 (ENSNSUG00000012794)
Eastern brown snake	MODERN SPECIES	68	SAT1 (ENSPTXG00000007081)	ACOT9 (ENSPTXG00000007080)	PRDX4 (ENSPTXG00000007079)	ENSPTXG00000007078	ENSPTXG00000007077	ENSPTXG00000007076	PHEX (ENSPTXG00000007074)	SMS (ENSPTXG00000007072)	MBTPS2 (ENSPTXG00000007071)	SMPX (ENSPTXG00000007070)	KLHL34 (ENSPTXG00000007069)	CNKSR2 (ENSPTXG00000006394)	RPS6KA3 (ENSPTXG00000006391)	ENSPTXG00000006389	MAP7D2 (ENSPTXG00000006388) ##21	BCLAF3 (ENSPTXG00000006385) ##22	SH3KBP1 (ENSPTXG00000006343)	MAP3K15 (ENSPTXG00000006040)	ENSPTXG00000006031	ADGRG2 (ENSPTXG00000006028)	PHKA2 (ENSPTXG00000005919)	PPEF1 (ENSPTXG00000005838)	RS1 (ENSPTXG00000005836)	CDKL5 (ENSPTXG00000005834)	ENSPTXG00000005833	RAI2 (ENSPTXG00000005832)	NHS (ENSPTXG00000005831)	REPS2 (ENSPTXG00000005830)	TXLNG (ENSPTXG00000005829)	SYAP1 (ENSPTXG00000005828)	CTPS2 (ENSPTXG00000005827)
Blue-lipped sea krait	MODERN SPECIES	10764																BCLAF3 (ENSLLTG00000010942) ##22
Indian cobra	MODERN SPECIES	5	ENSNNAG00000010149	APOO (ENSNNAG00000010195)	SAT1 (ENSNNAG00000010234)	ACOT9 (ENSNNAG00000010278)	PRDX4 (ENSNNAG00000010298)	ENSNNAG00000010387	PHEX (ENSNNAG00000010440)	SMS (ENSNNAG00000010591)	MBTPS2 (ENSNNAG00000010623)	SMPX (ENSNNAG00000010781)	ENSNNAG00000010819	CNKSR2 (ENSNNAG00000010893)	RPS6KA3 (ENSNNAG00000012085)	ENSNNAG00000013320	MAP7D2 (ENSNNAG00000013341) ##21	BCLAF3 (ENSNNAG00000013397) ##22	SH3KBP1 (ENSNNAG00000013422)	ENSNNAG00000013538	ENSNNAG00000013560	ENSNNAG00000013584	ADGRG2 (ENSNNAG00000013659)	PHKA2 (ENSNNAG00000013955)	PPEF1 (ENSNNAG00000015798)	RS1 (ENSNNAG00000015902)	CDKL5 (ENSNNAG00000015926)	SCML2 (ENSNNAG00000016034)	RAI2 (ENSNNAG00000016127)	NHS (ENSNNAG00000016137)	REPS2 (ENSNNAG00000016184)	TXLNG (ENSNNAG00000016235)	CTPS2 (ENSNNAG00000016371)
Lizard	MODERN SPECIES	2	SAT1 (ENSACAG00000007429)	ACOT9 (ENSACAG00000007472)	ENSACAG00000007489	PTCHD1 (ENSACAG00000007519)	PHEX (ENSACAG00000007524)	ENSACAG00000016737	ENSACAG00000040170	MBTPS2 (ENSACAG00000016735)	SMPX (ENSACAG00000016732)	KLHL34 (ENSACAG00000016729)	CNKSR2 (ENSACAG00000025299)	ENSACAG00000035874	ENSACAG00000012681	ENSACAG00000012660	MAP7D2 (ENSACAG00000012609) ##21	BCLAF3 (ENSACAG00000012584) ##22	ENSACAG00000042897	ENSACAG00000040558	SH3KBP1 (ENSACAG00000012504)	MAP3K15 (ENSACAG00000012298)	ENSACAG00000012190	ADGRG2 (ENSACAG00000011948)	PHKA2 (ENSACAG00000011798)	PPEF1 (ENSACAG00000011757)	ENSACAG00000011736	CDKL5 (ENSACAG00000011708)	SCML2 (ENSACAG00000011680)	ENSACAG00000011661	ENSACAG00000040842	NHS (ENSACAG00000011634)	ENSACAG00000042117
tuatara	MODERN SPECIES	196	SAT1 (ENSSPUG00000000012)	ACOT9 (ENSSPUG00000000008)	PRDX4 (ENSSPUG00000018756)	ENSSPUG00000018753	ENSSPUG00000018750	ENSSPUG00000018743	PHEX (ENSSPUG00000018709)	SMS (ENSSPUG00000018687)	MBTPS2 (ENSSPUG00000018676)	SMPX (ENSSPUG00000018668)	ENSSPUG00000018663	CNKSR2 (ENSSPUG00000018596)	RPS6KA3 (ENSSPUG00000018513)	EIF1AY (ENSSPUG00000018499)	MAP7D2 (ENSSPUG00000018461) ##21	BCLAF3 (ENSSPUG00000018428) ##22	SH3KBP1 (ENSSPUG00000018416)	MAP3K15 (ENSSPUG00000018390)	ENSSPUG00000018366	ADGRG2 (ENSSPUG00000018353)	PHKA2 (ENSSPUG00000018218)	PPEF1 (ENSSPUG00000018122)	ENSSPUG00000018108	CDKL5 (ENSSPUG00000018011)	SCML2 (ENSSPUG00000017922)	ENSSPUG00000017869	REPS2 (ENSSPUG00000017827)	RBBP7 (ENSSPUG00000017820)	TXLNG (ENSSPUG00000017809)	SYAP1 (ENSSPUG00000017802)	ENSSPUG00000017794
Mammalia	ANCESTRAL SPECIES		ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Theria	ANCESTRAL SPECIES	1	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000163807	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Marsupialia	ANCESTRAL SPECIES	23	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.g
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00510000048637	ENSGT00530000063666.b.cb	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a.f	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.g	ENSGT00940000161415	ENSGT00940000158147	ENSGT00940000158272	ENSGT00950000182852.A.a.b	ENSGT00390000006574	ENSGT00390000004660.C.b	ENSGT00390000000191	ENSGT00550000074838	ENSGT00940000157095	ENSGT00390000007797	ENSGT00940000155530	ENSGT00940000159169
Diprotodontia	ANCESTRAL SPECIES	23	ENSGT00940000159116	ENSGT00510000048637	ENSGT00530000063666.b.cb	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a.f	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.g	ENSGT00940000161415	ENSGT00940000158147	ENSGT00940000158272	ENSGT00950000182852.A.a.b	ENSGT00390000006574	ENSGT00390000004660.C.b	ENSGT00390000000191	ENSGT00550000074838	ENSGT00940000157095	ENSGT00390000007797	ENSGT00940000155530	ENSGT00940000159169
Diprotodontia_a	ANCESTRAL SPECIES	24	ENSGT00940000159116	ENSGT00510000048637	ENSGT00530000063666.b.cb	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a.f	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.g	ENSGT00940000161415	ENSGT00940000158147	ENSGT00940000158272	ENSGT00950000182852.A.a.b	ENSGT00390000006574	ENSGT00390000004660.C.b	ENSGT00390000000191	ENSGT00550000074838	ENSGT00940000157095	ENSGT00390000007797	ENSGT00940000155530	ENSGT00940000159169
Common wonbat	MODERN SPECIES	56				ACOT9 (ENSVURG00010011656)	ENSVURG00010011668	PTCHD1 (ENSVURG00010011688)	PHEX (ENSVURG00010011707)	SMS (ENSVURG00010011730)	MBTPS2 (ENSVURG00010011746)	SMPX (ENSVURG00010011755)	ENSVURG00010011764	CNKSR2 (ENSVURG00010011791)	RPS6KA3 (ENSVURG00010011816)	EIF1AX (ENSVURG00010011856)	ENSVURG00010011864 ##21	BCLAF3 (ENSVURG00010011888) ##22	MAP3K15 (ENSVURG00010011944)	ENSVURG00010011964	ENSVURG00010011973	ST3GAL6 (ENSVURG00010012019)	DCBLD2 (ENSVURG00010012042)	COL8A1 (ENSVURG00010012056)	FILIP1L (ENSVURG00010012064)	CMSS1 (ENSVURG00010012075)	ENSVURG00010012099	TBC1D23 (ENSVURG00010012116)	NIT2 (ENSVURG00010012148)	TOMM70 (ENSVURG00010012184)	ENSVURG00010012941	TMEM45A (ENSVURG00010012942)	ADGRG7 (ENSVURG00010012960)
koala	MODERN SPECIES	36	ENSPCIG00000024014	ENSPCIG00000024012	SAT1 (ENSPCIG00000024007)	ACOT9 (ENSPCIG00000008098)	ENSPCIG00000008170	PTCHD1 (ENSPCIG00000008175)	ENSPCIG00000011702	PHEX (ENSPCIG00000011706)	SMS (ENSPCIG00000033142)	MBTPS2 (ENSPCIG00000011718)	ENSPCIG00000011721	CNKSR2 (ENSPCIG00000011723)	RPS6KA3 (ENSPCIG00000007618)	EIF1AX (ENSPCIG00000007615)	MAP7D2 (ENSPCIG00000007534) ##21	BCLAF3 (ENSPCIG00000007517) ##22	SH3KBP1 (ENSPCIG00000029212)	MAP3K15 (ENSPCIG00000009152)	ENSPCIG00000009157	ENSPCIG00000032452
Wallaby	MODERN SPECIES	9489																ENSMEUG00000008835 ##22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000008334	APOO (ENSSHAG00000008734)	SAT1 (ENSSHAG00000009704)	ACOT9 (ENSSHAG00000010202)	PRDX4 (ENSSHAG00000029195)	PTCHD1 (ENSSHAG00000012338)	PHEX (ENSSHAG00000008915)	SMS (ENSSHAG00000011004)	MBTPS2 (ENSSHAG00000012034)	SMPX (ENSSHAG00000023724)	KLHL34 (ENSSHAG00000025108)	CNKSR2 (ENSSHAG00000013024)	ENSSHAG00000024113	RPS6KA3 (ENSSHAG00000010273)	EIF1AX (ENSSHAG00000010995)	BCLAF3 (ENSSHAG00000012448) ##22	SH3KBP1 (ENSSHAG00000013892)	MAP3K15 (ENSSHAG00000014925)	ENSSHAG00000015375	ENSSHAG00000024653	ENSSHAG00000010926	ENSSHAG00000022061	COL8A1 (ENSSHAG00000012024)	FILIP1L (ENSSHAG00000011515)	ENSSHAG00000030984	CMSS1 (ENSSHAG00000009321)	ENSSHAG00000008996	TBC1D23 (ENSSHAG00000007828)	NIT2 (ENSSHAG00000007371)	TOMM70 (ENSSHAG00000007111)	ENSSHAG00000006175
Opossum	MODERN SPECIES	3	PRDX4 (ENSMODG00000007799)	PTCHD1 (ENSMODG00000007811)	ENSMODG00000037695	ENSMODG00000050590	PHEX (ENSMODG00000007861)	ENSMODG00000007897	MBTPS2 (ENSMODG00000007926)	ENSMODG00000007934	CNKSR2 (ENSMODG00000008001)	ENSMODG00000043235	ENSMODG00000051481	RPS6KA3 (ENSMODG00000008086)	ENSMODG00000027820	ENSMODG00000008113	MAP7D2 (ENSMODG00000008158) ##21	BCLAF3 (ENSMODG00000008177) ##22	ENSMODG00000008531	ENSMODG00000009020	ENSMODG00000009055	ENSMODG00000028099	BBX (ENSMODG00000001748)	CCDC54 (ENSMODG00000025189)	ENSMODG00000041564	CBLB (ENSMODG00000001816)	ENSMODG00000043098	ALCAM (ENSMODG00000001829)	ENSMODG00000043822	ENSMODG00000039570	ENSMODG00000037530	ENSMODG00000042278	ZPLD1 (ENSMODG00000001877)
Eutheria	ANCESTRAL SPECIES	26	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Boreoeutheria	ANCESTRAL SPECIES	11	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Euarchontoglires	ANCESTRAL SPECIES	11	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Glires	ANCESTRAL SPECIES	10	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Rodentia	ANCESTRAL SPECIES	10	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Sciuridae	ANCESTRAL SPECIES	28	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Marmotini	ANCESTRAL SPECIES	58	ENSGT00390000018687	ENSGT00940000153680.a	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000153648.a.f	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Marmotini_b	ANCESTRAL SPECIES	69	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153680.a	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000153648.a.f	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Squirrel	MODERN SPECIES	224	ENSSTOG00000026298	ENSSTOG00000002062	SAT1 (ENSSTOG00000019590)	ACOT9 (ENSSTOG00000002034)	PRDX4 (ENSSTOG00000002028)	PTCHD1 (ENSSTOG00000024846)	ENSSTOG00000027719	PHEX (ENSSTOG00000006838)	ENSSTOG00000034135	MBTPS2 (ENSSTOG00000010473)	SMPX (ENSSTOG00000002549)	CNKSR2 (ENSSTOG00000011389)	RPS6KA3 (ENSSTOG00000010494)	EIF1AX (ENSSTOG00000026117)	MAP7D2 (ENSSTOG00000013888) ##21	BCLAF3 (ENSSTOG00000020416) ##22	ENSSTOG00000031367	SH3KBP1 (ENSSTOG00000024324)
Arctic ground squirrel	MODERN SPECIES	319												RPS6KA3 (ENSUPAG00010016233)	ENSUPAG00010016262	MAP7D2 (ENSUPAG00010016279) ##21	ENSUPAG00010016489	BCLAF3 (ENSUPAG00010016497) ##22	SH3KBP1 (ENSUPAG00010016531)	MAP3K15 (ENSUPAG00010016860)	PDHA1 (ENSUPAG00010016887)	ENSUPAG00010016903	ADGRG2 (ENSUPAG00010016925)	PHKA2 (ENSUPAG00010017499)
Alpin marmot	MODERN SPECIES	21	ENSMMMG00000008306	PTCHD1 (ENSMMMG00000008301)	ENSMMMG00000008274	PHEX (ENSMMMG00000008240)	SMS (ENSMMMG00000008225)	ENSMMMG00000008215	ENSMMMG00000008211	MBTPS2 (ENSMMMG00000008190)	SMPX (ENSMMMG00000008177)	KLHL34 (ENSMMMG00000008160)	CNKSR2 (ENSMMMG00000008093)	RPS6KA3 (ENSMMMG00000008009)	EIF1AX (ENSMMMG00000007975)	MAP7D2 (ENSMMMG00000007516) ##21	ENSMMMG00000007500	BCLAF3 (ENSMMMG00000007465) ##22	ENSMMMG00000007426	SH3KBP1 (ENSMMMG00000007298)	MAP3K15 (ENSMMMG00000007247)	ENSMMMG00000007196	ADGRG2 (ENSMMMG00000006314)	PHKA2 (ENSMMMG00000006185)	PPEF1 (ENSMMMG00000006165)	RS1 (ENSMMMG00000006144)	CDKL5 (ENSMMMG00000006110)	ENSMMMG00000006089	SCML2 (ENSMMMG00000006071)	RAI2 (ENSMMMG00000006069)	ENSMMMG00000006065	NHS (ENSMMMG00000005679)	REPS2 (ENSMMMG00000005603)
Eurasian red squirrel	MODERN SPECIES	156	PTCHD1 (ENSSVLG00005023442)	ENSSVLG00005023477	PHEX (ENSSVLG00005023506)	SMS (ENSSVLG00005023626)	ENSSVLG00005023650	ENSSVLG00005023659	MBTPS2 (ENSSVLG00005023689)	SMPX (ENSSVLG00005023721)	KLHL34 (ENSSVLG00005023744)	CNKSR2 (ENSSVLG00005023957)	RPS6KA3 (ENSSVLG00005024949)	ENSSVLG00005024989	MAP7D2 (ENSSVLG00005025072) ##21	ENSSVLG00005025208	ENSSVLG00005025223	BCLAF3 (ENSSVLG00005025243) ##22	SH3KBP1 (ENSSVLG00005025277)	MAP3K15 (ENSSVLG00005025353)	PDHA1 (ENSSVLG00005025396)	ENSSVLG00005025413	ADGRG2 (ENSSVLG00005025609)	PHKA2 (ENSSVLG00005025821)	PPEF1 (ENSSVLG00005025839)	RS1 (ENSSVLG00005025848)	CDKL5 (ENSSVLG00005025859)	SCML2 (ENSSVLG00005025874)	ENSSVLG00005025889	RAI2 (ENSSVLG00005025894)	ENSSVLG00005025897	NHS (ENSSVLG00005025902)	ENSSVLG00005025906
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Hystricomorpha_a	ANCESTRAL SPECIES	60	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000154763.mb	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Hystricomorpha_b	ANCESTRAL SPECIES	73	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000154763.mb	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Long-tailed chinchilla	MODERN SPECIES	216	SAT1 (ENSCLAG00000002420)	ACOT9 (ENSCLAG00000002263)	PRDX4 (ENSCLAG00000002107)	PTCHD1 (ENSCLAG00000002022)	ENSCLAG00000017424	PHEX (ENSCLAG00000000629)	SMS (ENSCLAG00000000492)	ENSCLAG00000000440	MBTPS2 (ENSCLAG00000001960)	SMPX (ENSCLAG00000000955)	KLHL34 (ENSCLAG00000017438)	CNKSR2 (ENSCLAG00000000928)	RPS6KA3 (ENSCLAG00000000667)	EIF1AX (ENSCLAG00000000709)	MAP7D2 (ENSCLAG00000001716) ##21	BCLAF3 (ENSCLAG00000001580) ##22	SH3KBP1 (ENSCLAG00000001780)
Degu	MODERN SPECIES	51	ENSODEG00000017723	ENSODEG00000017676	SLC18A2 (ENSODEG00000017927)	ENSODEG00000017686	VAX1 (ENSODEG00000017835)	ENSODEG00000017629	ENSODEG00000017664	ENSODEG00000017934	ENO4 (ENSODEG00000017769)	HSPA12A (ENSODEG00000017751)	C10orf82 (ENSODEG00000017640)	RPS6KA3 (ENSODEG00000017781)	ENSODEG00000017687	MAP7D2 (ENSODEG00000017740) ##21	ENSODEG00000017632	BCLAF3 (ENSODEG00000018128) ##22	SH3KBP1 (ENSODEG00000017905)	MAP3K15 (ENSODEG00000017836)	ENSODEG00000017773
Guinea pig	MODERN SPECIES	59	ENSCPOG00000004197	SAT1 (ENSCPOG00000037886)	ACOT9 (ENSCPOG00000004188)	PRDX4 (ENSCPOG00000004185)	PTCHD1 (ENSCPOG00000035225)	ENSCPOG00000013960	PHEX (ENSCPOG00000006183)	ENSCPOG00000006176	MBTPS2 (ENSCPOG00000006171)	SMPX (ENSCPOG00000033393)	KLHL34 (ENSCPOG00000035985)	CNKSR2 (ENSCPOG00000009806)	RPS6KA3 (ENSCPOG00000008719)	EIF1AX (ENSCPOG00000039205)	MAP7D2 (ENSCPOG00000008706) ##21	BCLAF3 (ENSCPOG00000008695) ##22	SH3KBP1 (ENSCPOG00000006433)	MAP3K15 (ENSCPOG00000011102)	ENSCPOG00000009280	ADGRG2 (ENSCPOG00000011079)	PHKA2 (ENSCPOG00000011064)	PPEF1 (ENSCPOG00000006617)	RS1 (ENSCPOG00000007446)	CDKL5 (ENSCPOG00000007438)	RAI2 (ENSCPOG00000015535)	ENSCPOG00000038636	NHS (ENSCPOG00000020088)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000001331	ENSHGLG00000045573	ENSHGLG00000049321	ENSHGLG00000032273	ENSHGLG00000038266	CDKL5 (ENSHGLG00000001743)	RS1 (ENSHGLG00000001057)	PPEF1 (ENSHGLG00000001185)	ENSHGLG00000001092	PHKA2 (ENSHGLG00000001760)	ENSHGLG00000015862	ENSHGLG00000001460	ENSHGLG00000001399	ENSHGLG00000034312	MAP7D2 (ENSHGLG00000001155) ##21	BCLAF3 (ENSHGLG00000001058) ##22	ENSHGLG00000038256	ENSHGLG00000000866	ENSHGLG00000000584	ENSHGLG00000020000	ENSHGLG00000000543	ENSHGLG00000044116	ENSHGLG00000050318	ENSHGLG00000000563	ENSHGLG00000020425	ENSHGLG00000033146	ENSHGLG00000003413	PHEX (ENSHGLG00000003219)	ENSHGLG00000001773	MBTPS2 (ENSHGLG00000001714)	ENSHGLG00000046622
Rodentia_B	ANCESTRAL SPECIES	31	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Muroidea	ANCESTRAL SPECIES	30	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00390000005717.e.b.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.cc.a	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00390000008256.j.a.a	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C.p.b	ENSGT00940000155463
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00940000159832	ENSGT00940000153421.a.a.a.a.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.cc.a	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C.p.b	ENSGT00940000155463
Chinese hamster chok1gshd	MODERN SPECIES	230	SAT1 (ENSCGRG00001022103)	ENSCGRG00001000350	Prdx4 (ENSCGRG00001009299)	Ptchd1 (ENSCGRG00001010854)	ENSCGRG00001015828	ENSCGRG00001015986	Phex (ENSCGRG00001019759)	ENSCGRG00001000646	MBTPS2 (ENSCGRG00001018020)	Smpx (ENSCGRG00001020401)	Klhl34 (ENSCGRG00001014357)	Cnksr2 (ENSCGRG00001022169)	Rps6ka3 (ENSCGRG00001007518)	ENSCGRG00001022852	Map7d2 (ENSCGRG00001005576) ##21	Bclaf3 (ENSCGRG00001017632) ##22	Sh3kbp1 (ENSCGRG00001012962)	Map3k15 (ENSCGRG00001017037)	Pdha1 (ENSCGRG00001020742)	ENSCGRG00001020861	Adgrg2 (ENSCGRG00001022355)	Phka2 (ENSCGRG00001021729)	Ppef1 (ENSCGRG00001015088)	Rs1 (ENSCGRG00001017692)	Cdkl5 (ENSCGRG00001020755)	Scml2 (ENSCGRG00001017848)	ENSCGRG00001012613	Rai2 (ENSCGRG00001015408)	Nhs (ENSCGRG00001020344)	Reps2 (ENSCGRG00001011156)	ENSCGRG00001007647
Cricetidae_B	ANCESTRAL SPECIES	36	ENSGT00390000005717.e.b.b.a	ENSGT00390000005717.e.b.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.cc.a	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.a.a	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C.p.b	ENSGT00940000155463
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000028779	ENSPEMG00000017644	Prdx4 (ENSPEMG00000015131)	Ptchd1 (ENSPEMG00000024561)	Phex (ENSPEMG00000017527)	Sms (ENSPEMG00000003756)	Mbtps2 (ENSPEMG00000012008)	ENSPEMG00000026716	Smpx (ENSPEMG00000011852)	Klhl34 (ENSPEMG00000026377)	Cnksr2 (ENSPEMG00000012770)	ENSPEMG00000026965	Rps6ka3 (ENSPEMG00000018584)	ENSPEMG00000026098	Map7d2 (ENSPEMG00000000311) ##21	Bclaf3 (ENSPEMG00000008136) ##22	Sh3kbp1 (ENSPEMG00000007129)	Map3k15 (ENSPEMG00000012858)	Pdha1 (ENSPEMG00000008945)	ENSPEMG00000026878	Adgrg2 (ENSPEMG00000001110)	Phka2 (ENSPEMG00000004706)	Ppef1 (ENSPEMG00000012697)	Rs1 (ENSPEMG00000008058)	Cdkl5 (ENSPEMG00000002138)	ENSPEMG00000030730	Bend2 (ENSPEMG00000011757)	Rai2 (ENSPEMG00000008659)	Nhs (ENSPEMG00000017716)	Reps2 (ENSPEMG00000006508)	ENSPEMG00000031235
Prairie vole	MODERN SPECIES	360	ENSMOCG00000017700	ENSMOCG00000012478	ENSMOCG00000006009	Phex (ENSMOCG00000021326)	Sms (ENSMOCG00000016092)	Yy2 (ENSMOCG00000013780)	Mbtps2 (ENSMOCG00000016533)	Smpx (ENSMOCG00000009712)	Cnksr2 (ENSMOCG00000000158)	ENSMOCG00000017907	ENSMOCG00000016797	Rps6ka3 (ENSMOCG00000012164)	ENSMOCG00000013551	ENSMOCG00000004138	Map7d2 (ENSMOCG00000019149) ##21	Bclaf3 (ENSMOCG00000005833) ##22	Sh3kbp1 (ENSMOCG00000020425)	Map3k15 (ENSMOCG00000013071)	Pdha1 (ENSMOCG00000002601)	Adgrg2 (ENSMOCG00000011315)	Phka2 (ENSMOCG00000021208)	Ppef1 (ENSMOCG00000019014)	Rs1 (ENSMOCG00000012992)	Cdkl5 (ENSMOCG00000014110)	Scml2 (ENSMOCG00000004081)	Bend2 (ENSMOCG00000002447)	Rai2 (ENSMOCG00000020088)	Nhs (ENSMOCG00000016164)	ENSMOCG00000006840	ENSMOCG00000001018	Reps2 (ENSMOCG00000007173)
Murinae	ANCESTRAL SPECIES	32			ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Mus	ANCESTRAL SPECIES	9	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00860000136365	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Mus_A	ANCESTRAL SPECIES	15	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00860000136365	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370	ENSGT00390000008256.j.a.a	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Mus_B	ANCESTRAL SPECIES	14	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330.bb	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00860000136365	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370	ENSGT00390000008256.j.b	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Mus_C	ANCESTRAL SPECIES	22	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330.bb	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00860000136365	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00950000182987.c.a.a.o.b.h	ENSGT00940000159370	ENSGT00390000008256.j.a.a	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Steppe mouse	MODERN SPECIES	1871																ENSMSIG00000005739 ##22	ENSMSIG00000005746
spretus	MODERN SPECIES	19	Acot9 (MGP_SPRETEiJ_G0034688)	Prdx4 (MGP_SPRETEiJ_G0034689)	Ptchd1 (MGP_SPRETEiJ_G0034690)	MGP_SPRETEiJ_G0034691	Phex (MGP_SPRETEiJ_G0034692)	Sms (MGP_SPRETEiJ_G0034693)	Mbtps2 (MGP_SPRETEiJ_G0034694)	Yy2 (MGP_SPRETEiJ_G0034695)	Smpx (MGP_SPRETEiJ_G0034696)	Klhl34 (MGP_SPRETEiJ_G0034697)	Cnksr2 (MGP_SPRETEiJ_G0034698)	MGP_SPRETEiJ_G0034699	Rps6ka3 (MGP_SPRETEiJ_G0034700)	MGP_SPRETEiJ_G0034701	Map7d2 (MGP_SPRETEiJ_G0034702) ##21	Bclaf3 (MGP_SPRETEiJ_G0034703) ##22	Sh3kbp1 (MGP_SPRETEiJ_G0034704)	Map3k15 (MGP_SPRETEiJ_G0034705)	Pdha1 (MGP_SPRETEiJ_G0034706)	Adgrg2 (MGP_SPRETEiJ_G0034707)	Phka2 (MGP_SPRETEiJ_G0034708)	Ppef1 (MGP_SPRETEiJ_G0034709)	Rs1 (MGP_SPRETEiJ_G0034710)	Cdkl5 (MGP_SPRETEiJ_G0034711)	Gja6 (MGP_SPRETEiJ_G0034712)	MGP_SPRETEiJ_G0034713	Rai2 (MGP_SPRETEiJ_G0034714)	Nhs (MGP_SPRETEiJ_G0034715)	Reps2 (MGP_SPRETEiJ_G0034716)	Rbbp7 (MGP_SPRETEiJ_G0034717)	Txlng (MGP_SPRETEiJ_G0034718)
Mouse	MODERN SPECIES	37	Sat1 (ENSMUSG00000025283)	Acot9 (ENSMUSG00000025287)	Prdx4 (ENSMUSG00000025289)	Ptchd1 (ENSMUSG00000041552)	Gm15155 (ENSMUSG00000055109)	Phex (ENSMUSG00000057457)	Sms (ENSMUSG00000071708)	Mbtps2 (ENSMUSG00000046873)	Yy2 (ENSMUSG00000091736)	Smpx (ENSMUSG00000041476)	Klhl34 (ENSMUSG00000047485)	Cnksr2 (ENSMUSG00000025658)	Rps6ka3 (ENSMUSG00000031309)	Eif1ax (ENSMUSG00000067194)	Map7d2 (ENSMUSG00000041020) ##21	Bclaf3 (ENSMUSG00000044150) ##22	Sh3kbp1 (ENSMUSG00000040990)	Map3k15 (ENSMUSG00000031303)	Pdha1 (ENSMUSG00000031299)	Adgrg2 (ENSMUSG00000031298)	Phka2 (ENSMUSG00000031295)	Ppef1 (ENSMUSG00000062168)	Rs1 (ENSMUSG00000031293)	Cdkl5 (ENSMUSG00000031292)	Gja6 (ENSMUSG00000055691)	Scml2 (ENSMUSG00000000037)	Bend2 (ENSMUSG00000108981)	Rai2 (ENSMUSG00000043518)	Nhs (ENSMUSG00000059493)	Reps2 (ENSMUSG00000040855)	Rbbp7 (ENSMUSG00000031353)
Ryukyu mouse	MODERN SPECIES	19	MGP_CAROLIEiJ_G0033518	Prdx4 (MGP_CAROLIEiJ_G0033519)	Ptchd1 (MGP_CAROLIEiJ_G0033520)	MGP_CAROLIEiJ_G0033521	Phex (MGP_CAROLIEiJ_G0033522)	Sms (MGP_CAROLIEiJ_G0033523)	Mbtps2 (MGP_CAROLIEiJ_G0033524)	Yy2 (MGP_CAROLIEiJ_G0033525)	Smpx (MGP_CAROLIEiJ_G0033526)	Klhl34 (MGP_CAROLIEiJ_G0033527)	Cnksr2 (MGP_CAROLIEiJ_G0033528)	MGP_CAROLIEiJ_G0033529	Rps6ka3 (MGP_CAROLIEiJ_G0033530)	MGP_CAROLIEiJ_G0033531	Map7d2 (MGP_CAROLIEiJ_G0033532) ##21	Bclaf3 (MGP_CAROLIEiJ_G0033533) ##22	Sh3kbp1 (MGP_CAROLIEiJ_G0033534)	Map3k15 (MGP_CAROLIEiJ_G0033535)	Pdha1 (MGP_CAROLIEiJ_G0033536)	Adgrg2 (MGP_CAROLIEiJ_G0033537)	Phka2 (MGP_CAROLIEiJ_G0033538)	Ppef1 (MGP_CAROLIEiJ_G0033539)	Rs1 (MGP_CAROLIEiJ_G0033540)	Cdkl5 (MGP_CAROLIEiJ_G0033541)	Gja6 (MGP_CAROLIEiJ_G0033542)	MGP_CAROLIEiJ_G0033543	Rai2 (MGP_CAROLIEiJ_G0033544)	Nhs (MGP_CAROLIEiJ_G0033545)	Reps2 (MGP_CAROLIEiJ_G0033546)	Rbbp7 (MGP_CAROLIEiJ_G0033547)	Txlng (MGP_CAROLIEiJ_G0033548)
Shrew mouse	MODERN SPECIES	23	Sat1 (MGP_PahariEiJ_G0032057)	Prdx4 (MGP_PahariEiJ_G0032058)	Ptchd1 (MGP_PahariEiJ_G0032059)	MGP_PahariEiJ_G0032060	Phex (MGP_PahariEiJ_G0032061)	Sms (MGP_PahariEiJ_G0032062)	Mbtps2 (MGP_PahariEiJ_G0032063)	Yy2 (MGP_PahariEiJ_G0032064)	Smpx (MGP_PahariEiJ_G0032065)	Klhl34 (MGP_PahariEiJ_G0032066)	Cnksr2 (MGP_PahariEiJ_G0032067)	MGP_PahariEiJ_G0032068	Rps6ka3 (MGP_PahariEiJ_G0032069)	MGP_PahariEiJ_G0032070	Map7d2 (MGP_PahariEiJ_G0032071) ##21	Bclaf3 (MGP_PahariEiJ_G0032072) ##22	Sh3kbp1 (MGP_PahariEiJ_G0032073)	Map3k15 (MGP_PahariEiJ_G0032074)	Pdha1 (MGP_PahariEiJ_G0032075)	Adgrg2 (MGP_PahariEiJ_G0032076)	Phka2 (MGP_PahariEiJ_G0032077)	Ppef1 (MGP_PahariEiJ_G0032078)	Rs1 (MGP_PahariEiJ_G0032079)	Cdkl5 (MGP_PahariEiJ_G0032080)	Gja6 (MGP_PahariEiJ_G0032081)	MGP_PahariEiJ_G0032082	Rai2 (MGP_PahariEiJ_G0032083)	Nhs (MGP_PahariEiJ_G0032084)	Reps2 (MGP_PahariEiJ_G0032085)	Rbbp7 (MGP_PahariEiJ_G0032086)	Txlng (MGP_PahariEiJ_G0032087)
Rat	MODERN SPECIES	46	Ptchd1 (ENSRNOG00000069252)	ENSRNOG00000064829	LOC100361934 (ENSRNOG00000034182)	ENSRNOG00000067646	Phex (ENSRNOG00000023440)	Sms (ENSRNOG00000007688)	Yy2 (ENSRNOG00000007644)	ENSRNOG00000068938	Smpx (ENSRNOG00000007495)	Klhl34 (ENSRNOG00000024479)	Cnksr2 (ENSRNOG00000007014)	ENSRNOG00000062879	Rps6ka3 (ENSRNOG00000006632)	Eif1ax (ENSRNOG00000005736)	Map7d2 (ENSRNOG00000005176) ##21	Bclaf3 (ENSRNOG00000005135) ##22	Sh3kbp1 (ENSRNOG00000004322)	ENSRNOG00000066262	Map3k15 (ENSRNOG00000025290)	Pdha1 (ENSRNOG00000025383)	Lamtor1 (ENSRNOG00000004319)	ENSRNOG00000069571	Rps27a-ps5 (ENSRNOG00000032132)	Adgrg2 (ENSRNOG00000032472)	AABR07037995.1 (ENSRNOG00000003949)	Ppef1 (ENSRNOG00000027331)	ENSRNOG00000065877	Rs1 (ENSRNOG00000030434)	Gja6 (ENSRNOG00000069341)	Cdkl5 (ENSRNOG00000003742)	Scml2 (ENSRNOG00000003726)
Upper Galilee mountains blind mole rat	MODERN SPECIES	931												Cnksr2 (ENSNGAG00000009070)	Rps6ka3 (ENSNGAG00000019940)	Eif1ax (ENSNGAG00000018551)	Map7d2 (ENSNGAG00000016712) ##21	Bclaf3 (ENSNGAG00000015524) ##22	Sh3kbp1 (ENSNGAG00000021155)	Map3k15 (ENSNGAG00000018804)	Pdha1 (ENSNGAG00000015013)	Adgrg2 (ENSNGAG00000011202)	ENSNGAG00000017231	Ppef1 (ENSNGAG00000014571)	Rs1 (ENSNGAG00000010391)	Cdkl5 (ENSNGAG00000010787)
Kangaroo rat	MODERN SPECIES	413	Sat1 (ENSDORG00000028241)	ENSDORG00000002910	Prdx4 (ENSDORG00000002908)	Ptchd1 (ENSDORG00000004212)	Phex (ENSDORG00000010976)	ENSDORG00000025753	ENSDORG00000016069	Yy2 (ENSDORG00000011068)	Mbtps2 (ENSDORG00000011065)	Smpx (ENSDORG00000003075)	Cnksr2 (ENSDORG00000010230)	ENSDORG00000029700	Rps6ka3 (ENSDORG00000011802)	ENSDORG00000011536	Map7d2 (ENSDORG00000007990) ##21	Bclaf3 (ENSDORG00000007988) ##22	Sh3kbp1 (ENSDORG00000005919)	Map3k15 (ENSDORG00000011849)	Pdha1 (ENSDORG00000011848)	Adgrg2 (ENSDORG00000003270)	ENSDORG00000026958	ENSDORG00000011776
Lagomorpha	ANCESTRAL SPECIES	49	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Rabbit	MODERN SPECIES	1401	PRDX4 (ENSOCUG00000004786)	ENSOCUG00000037984	ENSOCUG00000022336	ENSOCUG00000032925	PTCHD1 (ENSOCUG00000014375)	ENSOCUG00000004437	PHEX (ENSOCUG00000006020)	SMS (ENSOCUG00000006016)	MBTPS2 (ENSOCUG00000016386)	SMPX (ENSOCUG00000001849)	KLHL34 (ENSOCUG00000014678)	CNKSR2 (ENSOCUG00000014660)	ENSOCUG00000027568	RPS6KA3 (ENSOCUG00000025948)	MAP7D2 (ENSOCUG00000016736) ##21	BCLAF3 (ENSOCUG00000015294) ##22	SH3KBP1 (ENSOCUG00000006268)	MAP3K15 (ENSOCUG00000014758)	PDHA1 (ENSOCUG00000014748)	ADGRG2 (ENSOCUG00000007324)	PPEF1 (ENSOCUG00000010801)	PHKA2 (ENSOCUG00000013782)	RS1 (ENSOCUG00000010796)	CDKL5 (ENSOCUG00000010775)	SCML2 (ENSOCUG00000007351)	ENSOCUG00000013622	RAI2 (ENSOCUG00000026517)	ENSOCUG00000021853	ENSOCUG00000028121	NHS (ENSOCUG00000013436)	ENSOCUG00000031876
Tree shrew	MODERN SPECIES	3935													RPS6KA3 (ENSTBEG00000017583)	EIF1AX (ENSTBEG00000017492)	MAP7D2 (ENSTBEG00000017363) ##21	BCLAF3 (ENSTBEG00000016865) ##22
Primates	ANCESTRAL SPECIES	19	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Haplorrhini	ANCESTRAL SPECIES	18	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080	ENSGT00940000154748.C
Simiiformes	ANCESTRAL SPECIES	9	ENSGT00510000048637	ENSGT00530000063666.b.h	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Catarrhini	ANCESTRAL SPECIES	12	ENSGT00510000048637	ENSGT00530000063666.b.h.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00530000063666.b.h.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Hominidae	ANCESTRAL SPECIES	8	ENSGT00530000063666.b.h.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT00940000157313	ENSGT00870000136506.pb	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00530000063666.b.h.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT00940000157313	ENSGT00870000136506.pb	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Gorilla	MODERN SPECIES	523	ACOT9 (ENSGGOG00000015401)	PRDX4 (ENSGGOG00000026790)	PTCHD1 (ENSGGOG00000044059)	ENSGGOG00000036181	ENSGGOG00000026912	CBLL2 (ENSGGOG00000034821)	ENSGGOG00000003961	ENSGGOG00000003123	MBTPS2 (ENSGGOG00000012064)	SMPX (ENSGGOG00000004353)	KLHL34 (ENSGGOG00000002780)	CNKSR2 (ENSGGOG00000013768)	RPS6KA3 (ENSGGOG00000008837)	ENSGGOG00000012186	MAP7D2 (ENSGGOG00000007760) ##21	BCLAF3 (ENSGGOG00000009453) ##22	SH3KBP1 (ENSGGOG00000008333)	MAP3K15 (ENSGGOG00000008317)	ENSGGOG00000013574	ENSGGOG00000040627	ADGRG2 (ENSGGOG00000003424)	PHKA2 (ENSGGOG00000003407)	PPEF1 (ENSGGOG00000003393)	RS1 (ENSGGOG00000023949)	CDKL5 (ENSGGOG00000010796)	SCML2 (ENSGGOG00000015959)	BEND2 (ENSGGOG00000003458)	SCML1 (ENSGGOG00000003874)	NHS (ENSGGOG00000000704)	ENSGGOG00000022186	REPS2 (ENSGGOG00000016013)
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT00940000157313	ENSGT00870000136506.pb	ENSGT00940000167584	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080
Human	MODERN SPECIES	1827	ACOT9 (ENSG00000123130)	PRDX4 (ENSG00000123131)	PTCHD1 (ENSG00000165186)	DDX53 (ENSG00000184735)	CBLL2 (ENSG00000175809)	PHEX (ENSG00000102174)	SMS (ENSG00000102172)	YY2 (ENSG00000230797)	MBTPS2 (ENSG00000012174)	SMPX (ENSG00000091482)	KLHL34 (ENSG00000185915)	CNKSR2 (ENSG00000149970)	RPS6KA3 (ENSG00000177189)	EIF1AX (ENSG00000173674)	MAP7D2 (ENSG00000184368) ##21	BCLAF3 (ENSG00000173681) ##22	SH3KBP1 (ENSG00000147010)	MAP3K15 (ENSG00000180815)	PDHA1 (ENSG00000131828)	ADGRG2 (ENSG00000173698)	PHKA2 (ENSG00000044446)	PPEF1 (ENSG00000086717)	RS1 (ENSG00000102104)	CDKL5 (ENSG00000008086)	SCML2 (ENSG00000102098)	BEND2 (ENSG00000177324)	RAI2 (ENSG00000131831)	SCML1 (ENSG00000047634)	NHS (ENSG00000188158)	REPS2 (ENSG00000169891)	RBBP7 (ENSG00000102054)
Pan	ANCESTRAL SPECIES	6	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT00940000166413	ENSGT00940000157313	ENSGT00870000136506.pb	ENSGT00940000167584	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000154152.d.a.b
Chimpanzee	MODERN SPECIES	972	ACOT9 (ENSPTRG00000021740)	PRDX4 (ENSPTRG00000049325)	PTCHD1 (ENSPTRG00000021738)	DDX53 (ENSPTRG00000028313)	ENSPTRG00000047608	CBLL2 (ENSPTRG00000028314)	PHEX (ENSPTRG00000021737)	ENSPTRG00000044028	MBTPS2 (ENSPTRG00000021735)	SMPX (ENSPTRG00000047975)	KLHL34 (ENSPTRG00000021733)	CNKSR2 (ENSPTRG00000021731)	RPS6KA3 (ENSPTRG00000052293)	ENSPTRG00000021728	MAP7D2 (ENSPTRG00000021727) ##21	BCLAF3 (ENSPTRG00000021725) ##22	SH3KBP1 (ENSPTRG00000048773)	MAP3K15 (ENSPTRG00000022605)	PDHA1 (ENSPTRG00000021717)	ADGRG2 (ENSPTRG00000021716)	PHKA2 (ENSPTRG00000021715)	ENSPTRG00000046843	PPEF1 (ENSPTRG00000021714)	RS1 (ENSPTRG00000021713)	CDKL5 (ENSPTRG00000021711)	SCML2 (ENSPTRG00000021710)	BEND2 (ENSPTRG00000021708)	SCML1 (ENSPTRG00000021706)	NHS (ENSPTRG00000021705)	ENSPTRG00000047191	ENSPTRG00000052150
Bonobo	MODERN SPECIES	369	PRDX4 (ENSPPAG00000038998)	PTCHD1 (ENSPPAG00000013963)	DDX53 (ENSPPAG00000006869)	ENSPPAG00000031560	CBLL2 (ENSPPAG00000006152)	PHEX (ENSPPAG00000012368)	ENSPPAG00000035805	YY2 (ENSPPAG00000033052)	MBTPS2 (ENSPPAG00000033207)	SMPX (ENSPPAG00000030194)	KLHL34 (ENSPPAG00000025617)	CNKSR2 (ENSPPAG00000037182)	RPS6KA3 (ENSPPAG00000029748)	EIF1AX (ENSPPAG00000033962)	MAP7D2 (ENSPPAG00000040804) ##21	BCLAF3 (ENSPPAG00000040123) ##22	SH3KBP1 (ENSPPAG00000037769)	MAP3K15 (ENSPPAG00000039708)	PDHA1 (ENSPPAG00000032993)	ADGRG2 (ENSPPAG00000044060)	PHKA2 (ENSPPAG00000036527)	ENSPPAG00000027509	PPEF1 (ENSPPAG00000027881)	RS1 (ENSPPAG00000040996)	CDKL5 (ENSPPAG00000027668)	SCML2 (ENSPPAG00000039952)	BEND2 (ENSPPAG00000032642)	SCML1 (ENSPPAG00000031177)	NHS (ENSPPAG00000031794)	ENSPPAG00000004504	ENSPPAG00000031475
Orangutan	MODERN SPECIES	242	ACOT9 (ENSPPYG00000020189)	ENSPPYG00000020188	PTCHD1 (ENSPPYG00000020187)	DDX53 (ENSPPYG00000020185)	ENSPPYG00000036724	CBLL2 (ENSPPYG00000020184)	PHEX (ENSPPYG00000020183)	SMS (ENSPPYG00000020182)	MBTPS2 (ENSPPYG00000020181)	SMPX (ENSPPYG00000020180)	KLHL34 (ENSPPYG00000020179)	CNKSR2 (ENSPPYG00000020178)	RPS6KA3 (ENSPPYG00000020177)	EIF1AX (ENSPPYG00000038921)	MAP7D2 (ENSPPYG00000020175) ##21	BCLAF3 (ENSPPYG00000020174) ##22	SH3KBP1 (ENSPPYG00000020173)	MAP3K15 (ENSPPYG00000020172)	PDHA1 (ENSPPYG00000020171)	ADGRG2 (ENSPPYG00000020170)	PHKA2 (ENSPPYG00000020169)	ENSPPYG00000038507	PPEF1 (ENSPPYG00000020168)	RS1 (ENSPPYG00000020167)	CDKL5 (ENSPPYG00000020166)	SCML2 (ENSPPYG00000020165)	BEND2 (ENSPPYG00000020164)	RAI2 (ENSPPYG00000020163)	SCML1 (ENSPPYG00000020162)	NHS (ENSPPYG00000020161)	ENSPPYG00000020160
Gibbon	MODERN SPECIES	449	SAT1 (ENSNLEG00000010015)	ACOT9 (ENSNLEG00000010007)	PRDX4 (ENSNLEG00000029389)	PTCHD1 (ENSNLEG00000010004)	ENSNLEG00000027485	ENSNLEG00000018743	PHEX (ENSNLEG00000009980)	SMS (ENSNLEG00000009955)	MBTPS2 (ENSNLEG00000009943)	SMPX (ENSNLEG00000009938)	CNKSR2 (ENSNLEG00000009933)	RPS6KA3 (ENSNLEG00000009925)	ENSNLEG00000009913	MAP7D2 (ENSNLEG00000009884) ##21	ENSNLEG00000009882	BCLAF3 (ENSNLEG00000009878) ##22	SH3KBP1 (ENSNLEG00000009860)	MAP3K15 (ENSNLEG00000009849)	PDHA1 (ENSNLEG00000009805)	ADGRG2 (ENSNLEG00000009745)	PHKA2 (ENSNLEG00000009732)	ENSNLEG00000029919	PPEF1 (ENSNLEG00000009696)	RS1 (ENSNLEG00000009691)	CDKL5 (ENSNLEG00000009674)	ENSNLEG00000027405	SCML2 (ENSNLEG00000009648)	BEND2 (ENSNLEG00000009644)	SCML1 (ENSNLEG00000009621)	NHS (ENSNLEG00000009610)	ENSNLEG00000029607
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00530000063666.b.h.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00530000063666.b.h.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000154185.l.a.a.b
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00530000063666.b.h.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562.e.b	ENSGT00940000159562.e.a	ENSGT00530000063174.a.i.e	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a
Macaca	ANCESTRAL SPECIES	29	ENSGT00530000063666.b.h.b	ENSGT00940000154326.a.a.h.e.a	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562.e.b	ENSGT00530000063174.a.i.e	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.b.a
Macaca_a	ANCESTRAL SPECIES	11	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000164709.a.b.b.a.b.b.b.a.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562.e.b	ENSGT00530000063174.a.i.e	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.b.b.a.a.b.a.a.a.b.b.a.a.b.b.a.a.b.a.b.b.a
Crab-eating macaque	MODERN SPECIES	175	DDX53 (ENSMFAG00000063689)	ENSMFAG00000055175	CBLL2 (ENSMFAG00000061234)	ENSMFAG00000064976	ENSMFAG00000057337	PHEX (ENSMFAG00000045722)	SMS (ENSMFAG00000039117)	MBTPS2 (ENSMFAG00000042182)	SMPX (ENSMFAG00000040826)	CNKSR2 (ENSMFAG00000037951)	ENSMFAG00000052941	ENSMFAG00000061291	RPS6KA3 (ENSMFAG00000045085)	ENSMFAG00000060557	MAP7D2 (ENSMFAG00000055804) ##21	BCLAF3 (ENSMFAG00000003230) ##22	ENSMFAG00000021756	SH3KBP1 (ENSMFAG00000002962)	ENSMFAG00000000869	ENSMFAG00000058383	PDHA1 (ENSMFAG00000043170)	ADGRG2 (ENSMFAG00000001073)	PHKA2 (ENSMFAG00000044106)	ENSMFAG00000034482	PPEF1 (ENSMFAG00000032152)	RS1 (ENSMFAG00000003687)	CDKL5 (ENSMFAG00000030921)	SCML2 (ENSMFAG00000042495)	BEND2 (ENSMFAG00000036840)	ENSMFAG00000065282	RAI2 (ENSMFAG00000001310)
Rhesus	MODERN SPECIES	327	PRDX4 (ENSMMUG00000021366)	PTCHD1 (ENSMMUG00000001088)	DDX53 (ENSMMUG00000022142)	CBLL2 (ENSMMUG00000003250)	PHEX (ENSMMUG00000023589)	SMS (ENSMMUG00000020392)	ENSMMUG00000051932	YY2 (ENSMMUG00000022467)	SMPX (ENSMMUG00000057558)	KLHL34 (ENSMMUG00000007501)	CNKSR2 (ENSMMUG00000007500)	ENSMMUG00000063057	RPS6KA3 (ENSMMUG00000002134)	EIF1AX (ENSMMUG00000051148)	MAP7D2 (ENSMMUG00000000192) ##21	BCLAF3 (ENSMMUG00000004745) ##22	ENSMMUG00000010727	SH3KBP1 (ENSMMUG00000004744)	MAP3K15 (ENSMMUG00000061236)	PDHA1 (ENSMMUG00000017336)	ADGRG2 (ENSMMUG00000020515)	PHKA2 (ENSMMUG00000020513)	PPEF1 (ENSMMUG00000005066)	RS1 (ENSMMUG00000005065)	CDKL5 (ENSMMUG00000005063)	SCML2 (ENSMMUG00000005084)	BEND2 (ENSMMUG00000019969)	RAI2 (ENSMMUG00000001433)	SCML1 (ENSMMUG00000012899)	ENSMMUG00000060776	NHS (ENSMMUG00000012894)
Pig-tailed macaque	MODERN SPECIES	549	ENSMNEG00000042646	SAT1 (ENSMNEG00000028507)	ACOT9 (ENSMNEG00000034251)	PRDX4 (ENSMNEG00000030258)	PTCHD1 (ENSMNEG00000031256)	PHEX (ENSMNEG00000030561)	SMS (ENSMNEG00000030826)	ENSMNEG00000036966	MBTPS2 (ENSMNEG00000018031)	SMPX (ENSMNEG00000044214)	KLHL34 (ENSMNEG00000004752)	CNKSR2 (ENSMNEG00000033243)	RPS6KA3 (ENSMNEG00000013736)	EIF1AX (ENSMNEG00000035197)	MAP7D2 (ENSMNEG00000042827) ##21	BCLAF3 (ENSMNEG00000044107) ##22	ENSMNEG00000039258	SH3KBP1 (ENSMNEG00000037170)	MAP3K15 (ENSMNEG00000029196)	ENSMNEG00000043035	ADGRG2 (ENSMNEG00000043949)	PHKA2 (ENSMNEG00000039386)	ENSMNEG00000028824	PPEF1 (ENSMNEG00000034590)	RS1 (ENSMNEG00000043209)	CDKL5 (ENSMNEG00000004730)	SCML2 (ENSMNEG00000011431)	BEND2 (ENSMNEG00000036925)	SCML1 (ENSMNEG00000032587)	NHS (ENSMNEG00000032198)	ENSMNEG00000022446
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000167221	ENSGT01050000244986.b.b.d.a.b	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562.f	ENSGT00530000063174.a.i.e	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154152.d.a.b
Olive baboon	MODERN SPECIES	792	ENSPANG00000037872	CBLL2 (ENSPANG00000046007)	ENSPANG00000037098	PHEX (ENSPANG00000010105)	SMS (ENSPANG00000003155)	MBTPS2 (ENSPANG00000024280)	ENSPANG00000050152	SMPX (ENSPANG00000005741)	KLHL34 (ENSPANG00000012353)	CNKSR2 (ENSPANG00000011941)	ENSPANG00000029508	ENSPANG00000006351	RPS6KA3 (ENSPANG00000016330)	EIF1AX (ENSPANG00000030224)	MAP7D2 (ENSPANG00000019661) ##21	BCLAF3 (ENSPANG00000004509) ##22	SH3KBP1 (ENSPANG00000006736)	MAP3K15 (ENSPANG00000007384)	ENSPANG00000035301	ADGRG2 (ENSPANG00000004239)	PHKA2 (ENSPANG00000016122)	ENSPANG00000029606	PPEF1 (ENSPANG00000010228)	ENSPANG00000035243	CDKL5 (ENSPANG00000004460)	ENSPANG00000041187	SCML2 (ENSPANG00000018991)	RAI2 (ENSPANG00000015463)	SCML1 (ENSPANG00000010972)	NHS (ENSPANG00000007897)	ENSPANG00000047189
Cercopithecinae_d	ANCESTRAL SPECIES	51	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b.a	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506.ob.b	ENSGT00510000048066	ENSGT00940000153558.b.i.b.a.a.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562.f	ENSGT00530000063174.a.i.e	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000167769	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154152.d.a.b	ENSGT00940000154748.C.cb
Sooty mangabey	MODERN SPECIES	448	ACOT9 (ENSCATG00000031637)	PRDX4 (ENSCATG00000040922)	PTCHD1 (ENSCATG00000018108)	CBLL2 (ENSCATG00000014814)	PHEX (ENSCATG00000031574)	SMS (ENSCATG00000032661)	MBTPS2 (ENSCATG00000031542)	ENSCATG00000037334	SMPX (ENSCATG00000043293)	KLHL34 (ENSCATG00000014878)	CNKSR2 (ENSCATG00000035326)	ENSCATG00000035316	RPS6KA3 (ENSCATG00000036143)	EIF1AX (ENSCATG00000033237)	MAP7D2 (ENSCATG00000042697) ##21	BCLAF3 (ENSCATG00000039065) ##22	SH3KBP1 (ENSCATG00000034119)	MAP3K15 (ENSCATG00000024304)	PDHA1 (ENSCATG00000044567)	ADGRG2 (ENSCATG00000035439)	PHKA2 (ENSCATG00000044694)	ENSCATG00000037972	PPEF1 (ENSCATG00000043035)	RS1 (ENSCATG00000029796)	CDKL5 (ENSCATG00000041616)	SCML2 (ENSCATG00000038994)	BEND2 (ENSCATG00000036336)	SCML1 (ENSCATG00000006222)	NHS (ENSCATG00000033217)	REPS2 (ENSCATG00000041359)	ENSCATG00000037187
Drill	MODERN SPECIES	1190													RPS6KA3 (ENSMLEG00000034063)	EIF1AX (ENSMLEG00000031392)	MAP7D2 (ENSMLEG00000018058) ##21	BCLAF3 (ENSMLEG00000016996) ##22	SH3KBP1 (ENSMLEG00000038375)	MAP3K15 (ENSMLEG00000028673)	ENSMLEG00000033588	ADGRG2 (ENSMLEG00000030833)	PHKA2 (ENSMLEG00000029623)	ENSMLEG00000025963	PPEF1 (ENSMLEG00000035187)	RS1 (ENSMLEG00000024203)	CDKL5 (ENSMLEG00000038004)	SCML2 (ENSMLEG00000007077)
Vervet Monkey	MODERN SPECIES	203	SAT1 (ENSCSAG00000014398)	ACOT9 (ENSCSAG00000014405)	PRDX4 (ENSCSAG00000014411)	PTCHD1 (ENSCSAG00000014414)	DDX53 (ENSCSAG00000019540)	ENSCSAG00000019539	PHEX (ENSCSAG00000014426)	SMS (ENSCSAG00000014438)	MBTPS2 (ENSCSAG00000014446)	SMPX (ENSCSAG00000014455)	KLHL34 (ENSCSAG00000019538)	CNKSR2 (ENSCSAG00000014511)	RPS6KA3 (ENSCSAG00000014553)	EIF1AX (ENSCSAG00000014562)	MAP7D2 (ENSCSAG00000014575) ##21	BCLAF3 (ENSCSAG00000014582) ##22	SH3KBP1 (ENSCSAG00000014593)	MAP3K15 (ENSCSAG00000014608)	ADGRG2 (ENSCSAG00000014621)	PHKA2 (ENSCSAG00000014634)	PPEF1 (ENSCSAG00000014696)	RS1 (ENSCSAG00000014719)	CDKL5 (ENSCSAG00000014729)	SCML2 (ENSCSAG00000014738)	BEND2 (ENSCSAG00000014759)	RAI2 (ENSCSAG00000019537)	SCML1 (ENSCSAG00000014776)	NHS (ENSCSAG00000014780)	ENSCSAG00000019536	REPS2 (ENSCSAG00000014791)	RBBP7 (ENSCSAG00000014796)
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	500													ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b.c ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00910000148115	ENSGT00940000156341	ENSGT00950000183118.A.c.a
Golden snub-nosed monkey	MODERN SPECIES	2712																BCLAF3 (ENSRROG00000036962) ##22	SH3KBP1 (ENSRROG00000034116)	ENSRROG00000038162	MAP3K15 (ENSRROG00000040875)	PDHA1 (ENSRROG00000021554)	ADGRG2 (ENSRROG00000031914)
Black snub-nosed monkey	MODERN SPECIES	771													ENSRBIG00000031131	EIF1AX (ENSRBIG00000028406)	MAP7D2 (ENSRBIG00000043557) ##21	ENSRBIG00000017496 ##22
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00950000183163.b.d ##22
Black snub-nosed monkey	MODERN SPECIES	858																ENSRBIG00000037769 ##22
Platyrrhini	ANCESTRAL SPECIES	28	ENSGT00530000063666.b.h.d	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00390000003791.g.b	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.g	ENSGT00940000159562	ENSGT00530000063174.a.i.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154152.d.a.b.b	ENSGT00940000154748.C
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	814	PHEX (ENSANAG00000021236)	ENSANAG00000030126	ENSANAG00000032026	SMS (ENSANAG00000031156)	MBTPS2 (ENSANAG00000022738)	ENSANAG00000034743	SMPX (ENSANAG00000035900)	KLHL34 (ENSANAG00000020210)	CNKSR2 (ENSANAG00000030385)	ENSANAG00000019923	ENSANAG00000000067	RPS6KA3 (ENSANAG00000026591)	ENSANAG00000025820	ENSANAG00000030856	MAP7D2 (ENSANAG00000037417) ##21	ENSANAG00000026646 ##22	ENSANAG00000034832	ENSANAG00000030233	MAP3K15 (ENSANAG00000034023)	PDHA1 (ENSANAG00000030855)	ADGRG2 (ENSANAG00000034597)	PHKA2 (ENSANAG00000038435)	PPEF1 (ENSANAG00000023404)	RS1 (ENSANAG00000029033)	CDKL5 (ENSANAG00000034696)	SCML2 (ENSANAG00000020966)	ENSANAG00000037962	ENSANAG00000019386	SCML1 (ENSANAG00000021893)	NHS (ENSANAG00000033727)	REPS2 (ENSANAG00000031037)
Mas night monkey	MODERN SPECIES	1117	RTCA (ENSANAG00000025446)	VPREB1 (ENSANAG00000030624)	TOP3B (ENSANAG00000032388)	PPM1F (ENSANAG00000017831)	MAPK1 (ENSANAG00000025298)	YPEL1 (ENSANAG00000023399)	PPIL2 (ENSANAG00000035072)	SDF2L1 (ENSANAG00000023348)	CCDC116 (ENSANAG00000023107)	YDJC (ENSANAG00000028985)	ENSANAG00000028569	ENSANAG00000029109	HIC2 (ENSANAG00000027852)	ENSANAG00000022376	SERPIND1 (ENSANAG00000028231)	ENSANAG00000029066 ##22	PI4KA (ENSANAG00000026291)	SNAP29 (ENSANAG00000036017)	ENSANAG00000030224	CRKL (ENSANAG00000026760)	LZTR1 (ENSANAG00000033300)	THAP7 (ENSANAG00000022442)	P2RX6 (ENSANAG00000028388)	SLC7A4 (ENSANAG00000032636)	ENSANAG00000026867
Cebidae	ANCESTRAL SPECIES	18	ENSGT00530000063666.b.h.d.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00390000003791.g.b	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.g	ENSGT00940000159562	ENSGT00530000063174.a.i.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154152.d.a.b.b	ENSGT00940000154748.C
Cebidae_a	ANCESTRAL SPECIES	36	ENSGT00510000048637	ENSGT00530000063666.b.h.d.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00390000003791.g.b	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886.g	ENSGT00940000159562	ENSGT00530000063174.a.i.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164688	ENSGT00940000154174.s.a.b	ENSGT00940000164589	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154152.d.a.b.b
Capuchin	MODERN SPECIES	128				ENSCCAG00000024171	PHEX (ENSCCAG00000021705)	SMS (ENSCCAG00000038102)	MBTPS2 (ENSCCAG00000030619)	ENSCCAG00000034966	SMPX (ENSCCAG00000028916)	ENSCCAG00000031773	CNKSR2 (ENSCCAG00000029076)	ENSCCAG00000026463	RPS6KA3 (ENSCCAG00000036661)	EIF1AX (ENSCCAG00000020517)	MAP7D2 (ENSCCAG00000034873) ##21	BCLAF3 (ENSCCAG00000021782) ##22	ENSCCAG00000024335	MAP3K15 (ENSCCAG00000019733)	ENSCCAG00000020724	ENSCCAG00000025967	ENSCCAG00000033194	ADGRG2 (ENSCCAG00000021576)	PHKA2 (ENSCCAG00000037761)	PPEF1 (ENSCCAG00000018308)	RS1 (ENSCCAG00000037547)	CDKL5 (ENSCCAG00000028839)	SCML2 (ENSCCAG00000029741)	BEND2 (ENSCCAG00000028740)	ENSCCAG00000021224	SCML1 (ENSCCAG00000003357)	NHS (ENSCCAG00000015439)
Bolivian squirrel monkey	MODERN SPECIES	51	PRDX4 (ENSSBOG00000026851)	PTCHD1 (ENSSBOG00000022861)	ENSSBOG00000017959	ENSSBOG00000022205	PHEX (ENSSBOG00000035899)	ENSSBOG00000000154	SMS (ENSSBOG00000024222)	MBTPS2 (ENSSBOG00000029363)	SMPX (ENSSBOG00000033495)	CNKSR2 (ENSSBOG00000029741)	ENSSBOG00000018382	RPS6KA3 (ENSSBOG00000034830)	ENSSBOG00000029635	ENSSBOG00000031558	MAP7D2 (ENSSBOG00000029797) ##21	BCLAF3 (ENSSBOG00000031024) ##22	ENSSBOG00000036210	ENSSBOG00000026951	MAP3K15 (ENSSBOG00000023444)	PDHA1 (ENSSBOG00000021023)	ADGRG2 (ENSSBOG00000036029)	PHKA2 (ENSSBOG00000028848)	PPEF1 (ENSSBOG00000025564)	RS1 (ENSSBOG00000022074)	CDKL5 (ENSSBOG00000034927)	SCML2 (ENSSBOG00000023475)	BEND2 (ENSSBOG00000034571)	ENSSBOG00000032775	SCML1 (ENSSBOG00000025279)	NHS (ENSSBOG00000032082)	REPS2 (ENSSBOG00000018047)
Marmoset	MODERN SPECIES	78	ENSCJAG00000060367	ENSCJAG00000073282	ENSCJAG00000072524	PHEX (ENSCJAG00000005121)	SMS (ENSCJAG00000033933)	MBTPS2 (ENSCJAG00000046733)	SMPX (ENSCJAG00000005203)	KLHL34 (ENSCJAG00000041270)	CNKSR2 (ENSCJAG00000005220)	ENSCJAG00000073658	ENSCJAG00000005365	RPS6KA3 (ENSCJAG00000005239)	MAP7D2 (ENSCJAG00000005383) ##21	ENSCJAG00000079762	ENSCJAG00000022320	BCLAF3 (ENSCJAG00000045691) ##22	ENSCJAG00000005459	ENSCJAG00000005496	ENSCJAG00000073410	ENSCJAG00000072791	ADGRG2 (ENSCJAG00000005571)	ENSCJAG00000082522	PHKA2 (ENSCJAG00000005668)	PPEF1 (ENSCJAG00000005798)	RS1 (ENSCJAG00000005829)	CDKL5 (ENSCJAG00000005834)	SCML2 (ENSCJAG00000005875)	RAI2 (ENSCJAG00000003685)	ENSCJAG00000023313	ENSCJAG00000082727	ENSCJAG00000078610
Tarsier	MODERN SPECIES	5349													RPS6KA3 (ENSTSYG00000012466)	EIF1AX (ENSTSYG00000012460)	MAP7D2 (ENSTSYG00000012457) ##21	BCLAF3 (ENSTSYG00000004803) ##22
Strepsirrhini	ANCESTRAL SPECIES	23	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Lemuriformes	ANCESTRAL SPECIES	48	ENSGT00510000048637	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
Lemuriformes_a	ANCESTRAL SPECIES	204													ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT01090000260070.A	ENSGT00940000153528.a.b.a.b	ENSGT00940000159407
Greater bamboo lemur	MODERN SPECIES	897												RPS6KA3 (ENSPSMG00000012048)	ENSPSMG00000012611	ENSPSMG00000012718	MAP7D2 (ENSPSMG00000012793) ##21	BCLAF3 (ENSPSMG00000012870) ##22
Coquerels sifaka	MODERN SPECIES	505														ENSPCOG00000020014	MAP7D2 (ENSPCOG00000012090) ##21	BCLAF3 (ENSPCOG00000028321) ##22	SH3KBP1 (ENSPCOG00000019893)	MAP3K15 (ENSPCOG00000005414)	ENSPCOG00000020305	ADGRG2 (ENSPCOG00000022020)	PHKA2 (ENSPCOG00000021054)	PPEF1 (ENSPCOG00000013904)	RS1 (ENSPCOG00000018582)	CDKL5 (ENSPCOG00000022705)	ENSPCOG00000024633	ENSPCOG00000006194
Mouse lemur	MODERN SPECIES	169	ACOT9 (ENSMICG00000003532)	PRDX4 (ENSMICG00000031550)	PTCHD1 (ENSMICG00000000824)	PHEX (ENSMICG00000000193)	ENSMICG00000000192	ENSMICG00000037442	ENSMICG00000030382	MBTPS2 (ENSMICG00000008917)	ENSMICG00000044479	SMPX (ENSMICG00000008915)	KLHL34 (ENSMICG00000028251)	CNKSR2 (ENSMICG00000002912)	RPS6KA3 (ENSMICG00000004112)	EIF1AX (ENSMICG00000004110)	MAP7D2 (ENSMICG00000004105) ##21	BCLAF3 (ENSMICG00000004101) ##22	SH3KBP1 (ENSMICG00000004092)	MAP3K15 (ENSMICG00000004080)	PDHA1 (ENSMICG00000004067)	ADGRG2 (ENSMICG00000004232)	PHKA2 (ENSMICG00000004212)	PPEF1 (ENSMICG00000004203)	RS1 (ENSMICG00000004198)	CDKL5 (ENSMICG00000004179)	SCML2 (ENSMICG00000027531)	ENSMICG00000027086	NHS (ENSMICG00000036975)	REPS2 (ENSMICG00000003790)	RBBP7 (ENSMICG00000000440)	TXLNG (ENSMICG00000000438)	SYAP1 (ENSMICG00000000435)
Bushbaby	MODERN SPECIES	166	ENSOGAG00000026297	ENSOGAG00000034242	PTCHD1 (ENSOGAG00000016650)	ENSOGAG00000026282	PHEX (ENSOGAG00000010894)	ENSOGAG00000010892	MBTPS2 (ENSOGAG00000011151)	SMPX (ENSOGAG00000015469)	KLHL34 (ENSOGAG00000027270)	CNKSR2 (ENSOGAG00000015464)	ENSOGAG00000032783	RPS6KA3 (ENSOGAG00000008184)	ENSOGAG00000008182	ENSOGAG00000033040	MAP7D2 (ENSOGAG00000008176) ##21	BCLAF3 (ENSOGAG00000008168) ##22	SH3KBP1 (ENSOGAG00000002469)	MAP3K15 (ENSOGAG00000002467)	PDHA1 (ENSOGAG00000002466)	ADGRG2 (ENSOGAG00000011733)	PHKA2 (ENSOGAG00000002436)	PPEF1 (ENSOGAG00000002431)	RS1 (ENSOGAG00000002430)	CDKL5 (ENSOGAG00000002429)	ENSOGAG00000031862	SCML2 (ENSOGAG00000012455)	ENSOGAG00000012713	RAI2 (ENSOGAG00000017095)	ENSOGAG00000017092	NHS (ENSOGAG00000017089)	ENSOGAG00000000865
Laurasiatheria	ANCESTRAL SPECIES	16	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Laurasiatheria_a	ANCESTRAL SPECIES	10	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Artiodactyla	ANCESTRAL SPECIES	9	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080	ENSGT00940000154748.C
Suina	ANCESTRAL SPECIES	41	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Chacoan peccary	MODERN SPECIES	109													RPS6KA3 (ENSCWAG00000003548)	EIF1AX (ENSCWAG00000003625)	MAP7D2 (ENSCWAG00000003689) ##21	BCLAF3 (ENSCWAG00000003903) ##22	SH3KBP1 (ENSCWAG00000004005)	MAP3K15 (ENSCWAG00000004160)	PDHA1 (ENSCWAG00000004308)	ENSCWAG00000004397	ADGRG2 (ENSCWAG00000004734)	PHKA2 (ENSCWAG00000011981)	PPEF1 (ENSCWAG00000012062)	RS1 (ENSCWAG00000012171)	CDKL5 (ENSCWAG00000012250)	SCML2 (ENSCWAG00000012506)	RAI2 (ENSCWAG00000012729)	NHS (ENSCWAG00000012785)	REPS2 (ENSCWAG00000013113)	RBBP7 (ENSCWAG00000013432)	TXLNG (ENSCWAG00000013662)
Pig	MODERN SPECIES	300	ACOT9 (ENSSSCG00000012172)	PRDX4 (ENSSSCG00000012171)	ENSSSCG00000045320	PTCHD1 (ENSSSCG00000032433)	ENSSSCG00000012169	PHEX (ENSSSCG00000012167)	SMS (ENSSSCG00000012166)	ENSSSCG00000012165	SMPX (ENSSSCG00000032720)	KLHL34 (ENSSSCG00000033979)	CNKSR2 (ENSSSCG00000012164)	ENSSSCG00000060065	RPS6KA3 (ENSSSCG00000012163)	EIF1AX (ENSSSCG00000032223)	MAP7D2 (ENSSSCG00000012161) ##21	BCLAF3 (ENSSSCG00000023334) ##22	SH3KBP1 (ENSSSCG00000012160)	MAP3K15 (ENSSSCG00000020735)	PDHA1 (ENSSSCG00000023643)	ENSSSCG00000040104	ADGRG2 (ENSSSCG00000029756)	PHKA2 (ENSSSCG00000012157)	PPEF1 (ENSSSCG00000030274)	RS1 (ENSSSCG00000026932)	CDKL5 (ENSSSCG00000012156)	SCML2 (ENSSSCG00000012155)	ENSSSCG00000041054	ENSSSCG00000050671	ENSSSCG00000060254	RAI2 (ENSSSCG00000012153)	ENSSSCG00000012152
Artiodactyla_a	ANCESTRAL SPECIES	9	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080	ENSGT00940000154748.C
Artiodactyla_b	ANCESTRAL SPECIES	24	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080	ENSGT00940000154748.C
Cetacea	ANCESTRAL SPECIES	21	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330.r	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT01010000222890.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670
Odontoceti	ANCESTRAL SPECIES	22	ENSGT00390000005330.r	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164207	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00390000009113.a.a.k.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT01010000222890.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670
Odontoceti_a	ANCESTRAL SPECIES	20	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000164207	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00390000009113.a.a.k.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT01010000222890.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407.m	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670
Dolphin	MODERN SPECIES	930													RPS6KA3 (ENSTTRG00000002015)	EIF1AX (ENSTTRG00000002012)	MAP7D2 (ENSTTRG00000002011) ##21	BCLAF3 (ENSTTRG00000002010) ##22	SH3KBP1 (ENSTTRG00000002009)
Odontoceti_b	ANCESTRAL SPECIES	22	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000159407.n	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000164207	ENSGT00940000157313	ENSGT00940000172088	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00390000009113.a.a.k.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT01010000222890.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407.m	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670
Monodontidae	ANCESTRAL SPECIES	30	ENSGT00940000157080	ENSGT00940000159951.e.b.b.b	ENSGT00940000159407.n	ENSGT00390000008610.a.b.a.a.a	ENSGT00940000164207	ENSGT00940000157313	ENSGT00940000172088	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00390000009724.l.y.b	ENSGT00390000009113.a.a.k.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00390000002034.j	ENSGT01010000222890.b	ENSGT00940000160729.b	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00950000183087.A.a.a.a.b.b.a.a.a.a.b.b	ENSGT00940000159407.m	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00940000154164.d
Narwhal	MODERN SPECIES	309	ENSMMNG00015013158	ENSMMNG00015013143	PHEX (ENSMMNG00015013104)	ENSMMNG00015013065	ENSMMNG00015013042	MBTPS2 (ENSMMNG00015013011)	ENSMMNG00015012997	SMPX (ENSMMNG00015012992)	KLHL34 (ENSMMNG00015012985)	CNKSR2 (ENSMMNG00015012238)	ENSMMNG00015011934	ENSMMNG00015011921	RPS6KA3 (ENSMMNG00015011742)	ENSMMNG00015011692	MAP7D2 (ENSMMNG00015011661) ##21	BCLAF3 (ENSMMNG00015011642) ##22	ENSMMNG00015011630	ENSMMNG00015011610	ENSMMNG00015011595	ENSMMNG00015011582	SH3KBP1 (ENSMMNG00015011427)	PDHA1 (ENSMMNG00015011306)	ADGRG2 (ENSMMNG00015011189)	PHKA2 (ENSMMNG00015011017)	PPEF1 (ENSMMNG00015010972)	RS1 (ENSMMNG00015010947)	CDKL5 (ENSMMNG00015010933)	ENSMMNG00015010922	ENSMMNG00015010891	ENSMMNG00015010874	ENSMMNG00015010865
Beluga whale	MODERN SPECIES	41	ENSDLEG00000003616	ENSDLEG00000003610	ENSDLEG00000003601	ENSDLEG00000003596	PHEX (ENSDLEG00000003589)	SMS (ENSDLEG00000021074)	MBTPS2 (ENSDLEG00000021061)	ENSDLEG00000021055	SMPX (ENSDLEG00000021052)	CNKSR2 (ENSDLEG00000021034)	ENSDLEG00000021028	ENSDLEG00000021027	RPS6KA3 (ENSDLEG00000021020)	EIF1AX (ENSDLEG00000021017)	MAP7D2 (ENSDLEG00000020985) ##21	BCLAF3 (ENSDLEG00000020974) ##22	ENSDLEG00000020972	ENSDLEG00000020970	ENSDLEG00000020966	SH3KBP1 (ENSDLEG00000020919)	MAP3K15 (ENSDLEG00000020876)	PDHA1 (ENSDLEG00000020859)	ADGRG2 (ENSDLEG00000020709)	PHKA2 (ENSDLEG00000020633)	PPEF1 (ENSDLEG00000020612)	RS1 (ENSDLEG00000020598)	CDKL5 (ENSDLEG00000020591)	ENSDLEG00000020586	ENSDLEG00000020579	ENSDLEG00000020574	ENSDLEG00000020569
Vaquita	MODERN SPECIES	34	ENSPSNG00000022455	ENSPSNG00000022447	ENSPSNG00000022444	PHEX (ENSPSNG00000022431)	ENSPSNG00000022423	ENSPSNG00000022411	ENSPSNG00000022401	SMPX (ENSPSNG00000022398)	KLHL34 (ENSPSNG00000022394)	CNKSR2 (ENSPSNG00000022151)	ENSPSNG00000021866	ENSPSNG00000021849	RPS6KA3 (ENSPSNG00000021768)	EIF1AX (ENSPSNG00000021671)	MAP7D2 (ENSPSNG00000021591) ##21	BCLAF3 (ENSPSNG00000021539) ##22	ENSPSNG00000021512	SH3KBP1 (ENSPSNG00000021240)	PDHA1 (ENSPSNG00000020773)	ADGRG2 (ENSPSNG00000020539)	PHKA2 (ENSPSNG00000020358)	PPEF1 (ENSPSNG00000020159)	RS1 (ENSPSNG00000020065)	ENSPSNG00000020052	CDKL5 (ENSPSNG00000020000)	ENSPSNG00000019959	ENSPSNG00000019901	RAI2 (ENSPSNG00000019870)	ENSPSNG00000019850	NHS (ENSPSNG00000019626)	ENSPSNG00000019571
Sperm whale	MODERN SPECIES	13	PTCHD1 (ENSPCTG00005015207)	ENSPCTG00005015143	ENSPCTG00005014773	ENSPCTG00005014734	PHEX (ENSPCTG00005014479)	SMS (ENSPCTG00005014394)	ENSPCTG00005014208	SMPX (ENSPCTG00005014144)	KLHL34 (ENSPCTG00005014125)	CNKSR2 (ENSPCTG00005013662)	ENSPCTG00005013591	ENSPCTG00005013565	RPS6KA3 (ENSPCTG00005013127)	EIF1AX (ENSPCTG00005012927)	MAP7D2 (ENSPCTG00005012303) ##21	BCLAF3 (ENSPCTG00005012120) ##22	SH3KBP1 (ENSPCTG00005011856)	PDHA1 (ENSPCTG00005011695)	ADGRG2 (ENSPCTG00005006920)	PHKA2 (ENSPCTG00005006139)	PPEF1 (ENSPCTG00005005905)	RS1 (ENSPCTG00005005843)	CDKL5 (ENSPCTG00005005814)	ENSPCTG00005005791	SCML2 (ENSPCTG00005005727)	ENSPCTG00005005614	ENSPCTG00005005600	SCML1 (ENSPCTG00005005559)	NHS (ENSPCTG00005005450)	ENSPCTG00005005421	REPS2 (ENSPCTG00005005319)
Blue whale	MODERN SPECIES	40	ENSBMSG00010021259	ENSBMSG00010021247	ENSBMSG00010021244	PHEX (ENSBMSG00010021225)	ENSBMSG00010021206	ENSBMSG00010021193	SMPX (ENSBMSG00010021188)	KLHL34 (ENSBMSG00010021180)	CNKSR2 (ENSBMSG00010015971)	ENSBMSG00010015623	ENSBMSG00010015603	ENSBMSG00010015592	RPS6KA3 (ENSBMSG00010015348)	ENSBMSG00010015217	MAP7D2 (ENSBMSG00010015124) ##21	BCLAF3 (ENSBMSG00010015038) ##22	ENSBMSG00010014991	SH3KBP1 (ENSBMSG00010014785)	MAP3K15 (ENSBMSG00010014594)	PDHA1 (ENSBMSG00010014498)	ENSBMSG00010014456	ADGRG2 (ENSBMSG00010014260)	PHKA2 (ENSBMSG00010014126)	PPEF1 (ENSBMSG00010014080)	RS1 (ENSBMSG00010014012)	ENSBMSG00010013995	ENSBMSG00010013988	CDKL5 (ENSBMSG00010013954)	ENSBMSG00010013905	ENSBMSG00010013867	ENSBMSG00010013823
Pecora	ANCESTRAL SPECIES	34	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Yarkand deer	MODERN SPECIES	1323	DDX53 (ENSCHYG00000022828)	ENSCHYG00000022855	PHEX (ENSCHYG00000022869)	SMS (ENSCHYG00000022994)	ENSCHYG00000023111	MBTPS2 (ENSCHYG00000023135)	SMPX (ENSCHYG00000023180)	KLHL34 (ENSCHYG00000023198)	CNKSR2 (ENSCHYG00000023268)	ENSCHYG00000023829	ENSCHYG00000023852	RPS6KA3 (ENSCHYG00000023911)	EIF1AX (ENSCHYG00000024205)	ENSCHYG00000024281	MAP7D2 (ENSCHYG00000024324) ##21	BCLAF3 (ENSCHYG00000024575) ##22	SH3KBP1 (ENSCHYG00000024812)	MAP3K15 (ENSCHYG00000025350)	ENSCHYG00000025460	ENSCHYG00000025479	ADGRG2 (ENSCHYG00000025589)	PHKA2 (ENSCHYG00000014501)	ENSCHYG00000015895	ENSCHYG00000015917	PPEF1 (ENSCHYG00000016044)	RS1 (ENSCHYG00000016355)	CDKL5 (ENSCHYG00000016442)	SCML2 (ENSCHYG00000016775)	ENSCHYG00000017066	SYAP1 (ENSCHYG00000017346)	REPS2 (ENSCHYG00000017518)
Percora_a	ANCESTRAL SPECIES	22	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Siberian musk deer	MODERN SPECIES	39						SMS (ENSMMSG00000006339)	ENSMMSG00000006372	SMPX (ENSMMSG00000006404)	KLHL34 (ENSMMSG00000006431)	CNKSR2 (ENSMMSG00000006728)	ENSMMSG00000013799	ENSMMSG00000013809	RPS6KA3 (ENSMMSG00000013842)	ENSMMSG00000013961	MAP7D2 (ENSMMSG00000014040) ##21	BCLAF3 (ENSMMSG00000014667) ##22	SH3KBP1 (ENSMMSG00000014761)	ENSMMSG00000014880	ENSMMSG00000014890	MAP3K15 (ENSMMSG00000014913)	ENSMMSG00000015007	ENSMMSG00000015019	PDHA1 (ENSMMSG00000015042)	ENSMMSG00000015071	ADGRG2 (ENSMMSG00000015124)	PHKA2 (ENSMMSG00000015473)	PPEF1 (ENSMMSG00000015507)	RS1 (ENSMMSG00000015564)	CDKL5 (ENSMMSG00000015599)	SCML2 (ENSMMSG00000015652)	ENSMMSG00000015735
Bovidae	ANCESTRAL SPECIES	23	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Bovinae	ANCESTRAL SPECIES	32	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00950000185346	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000167584	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a.d.a.b	ENSGT00940000160347.a.c	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080
Bos	ANCESTRAL SPECIES	32	ENSGT00940000164183	ENSGT00950000185346	ENSGT00940000154451.l.b.b.a.a.b	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000167584	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00390000009113.a.a.l	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a.d.a.b	ENSGT00940000160347.a.c	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00900000141068.e.a.e.a.a
Bos_a	ANCESTRAL SPECIES	63	ENSGT00940000157080	ENSGT00940000164183	ENSGT00950000185346	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000167584	ENSGT00940000154451.l.b.b.a.a.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00390000009113.a.a.l	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a.d.a.b
Wild yak	MODERN SPECIES	932	ENSBMUG00000018827	ENSBMUG00000018805	ENSBMUG00000018792	PHEX (ENSBMUG00000018766)	SMS (ENSBMUG00000018739)	ENSBMUG00000018702	SMPX (ENSBMUG00000018671)	CNKSR2 (ENSBMUG00000017867)	ENSBMUG00000017291	ENSBMUG00000017283	ENSBMUG00000017276	ENSBMUG00000017267	RPS6KA3 (ENSBMUG00000017229)	EIF1AX (ENSBMUG00000017161)	MAP7D2 (ENSBMUG00000017083) ##21	BCLAF3 (ENSBMUG00000016986) ##22	SH3KBP1 (ENSBMUG00000016923)	MAP3K15 (ENSBMUG00000016858)	PDHA1 (ENSBMUG00000016808)
Domestic yak	MODERN SPECIES	69	PHEX (ENSBGRG00000008681)	ENSBGRG00000008903	ENSBGRG00000008920	SMS (ENSBGRG00000008940)	ENSBGRG00000009009	MBTPS2 (ENSBGRG00000009064)	ENSBGRG00000009234	SMPX (ENSBGRG00000009309)	KLHL34 (ENSBGRG00000009352)	CNKSR2 (ENSBGRG00000009403)	ENSBGRG00000009908	ENSBGRG00000009948	RPS6KA3 (ENSBGRG00000010065)	ENSBGRG00000010670	MAP7D2 (ENSBGRG00000011015) ##21	BCLAF3 (ENSBGRG00000011387) ##22	SH3KBP1 (ENSBGRG00000011750)	ENSBGRG00000012957	ENSBGRG00000013897	PDHA1 (ENSBGRG00000014128)	ENSBGRG00000014583	ENSBGRG00000014610	ENSBGRG00000014636
Bos_b	ANCESTRAL SPECIES	39	ENSGT00940000157080	ENSGT00940000164183	ENSGT00950000185346	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000167584	ENSGT00940000154451.l.b.b.a.a.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00390000009113.a.a.l	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000160347.a.d.a.b	ENSGT00940000160347.a.d.a.a.a	ENSGT00940000160347.a.c	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a
Cow	MODERN SPECIES	177	PTCHD1 (ENSBTAG00000020987)	ENSBTAG00000046635	ENSBTAG00000049480	PHEX (ENSBTAG00000000419)	ENSBTAG00000052700	SMS (ENSBTAG00000018382)	MBTPS2 (ENSBTAG00000008183)	SMPX (ENSBTAG00000015204)	CNKSR2 (ENSBTAG00000044202)	ENSBTAG00000013625	ENSBTAG00000050929	ENSBTAG00000047699	RPS6KA3 (ENSBTAG00000017639)	EIF1AX (ENSBTAG00000017633)	MAP7D2 (ENSBTAG00000017628) ##21	BCLAF3 (ENSBTAG00000021962) ##22	SH3KBP1 (ENSBTAG00000003727)	MAP3K15 (ENSBTAG00000019855)	PDHA1 (ENSBTAG00000019852)	ENSBTAG00000051616	ENSBTAG00000037550	MGC134232 (ENSBTAG00000038660)	ADGRG2 (ENSBTAG00000000576)	PHKA2 (ENSBTAG00000015355)	PPEF1 (ENSBTAG00000009545)	RS1 (ENSBTAG00000031145)	CDKL5 (ENSBTAG00000007428)	SCML2 (ENSBTAG00000009420)	RAI2 (ENSBTAG00000039049)	SCML1 (ENSBTAG00000017649)	NHS (ENSBTAG00000039195)
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005024079	ENSBIXG00005024121	PHEX (ENSBIXG00005024241)	SMS (ENSBIXG00005024286)	ENSBIXG00005024303	MBTPS2 (ENSBIXG00005024353)	SMPX (ENSBIXG00005024419)	CNKSR2 (ENSBIXG00005024732)	ENSBIXG00005024836	ENSBIXG00005024880	ENSBIXG00005024903	ENSBIXG00005024937	RPS6KA3 (ENSBIXG00005025516)	EIF1AX (ENSBIXG00005025615)	MAP7D2 (ENSBIXG00005025740) ##21	BCLAF3 (ENSBIXG00005025827) ##22	ENSBIXG00005025849	SH3KBP1 (ENSBIXG00005026195)	MAP3K15 (ENSBIXG00005004522)	ENSBIXG00005026498	ENSBIXG00005005571	ENSBIXG00005026535	ENSBIXG00005026541	ADGRG2 (ENSBIXG00005026817)	PHKA2 (ENSBIXG00005027106)	PPEF1 (ENSBIXG00005004677)	RS1 (ENSBIXG00005005321)	CDKL5 (ENSBIXG00005005323)	SCML2 (ENSBIXG00005005620)	RAI2 (ENSBIXG00005027505)	ENSBIXG00005027526
Caprinae	ANCESTRAL SPECIES	46	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000156832.p.b	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i.u.b	ENSGT00940000160347.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a.r	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Goat	MODERN SPECIES	29	PRDX4 (ENSCHIG00000022629)	PTCHD1 (ENSCHIG00000005349)	ENSCHIG00000020582	PHEX (ENSCHIG00000007176)	SMS (ENSCHIG00000007086)	MBTPS2 (ENSCHIG00000023780)	SMPX (ENSCHIG00000017409)	ENSCHIG00000007896	KLHL34 (ENSCHIG00000019743)	CNKSR2 (ENSCHIG00000017548)	ENSCHIG00000012004	ENSCHIG00000019442	RPS6KA3 (ENSCHIG00000022418)	ENSCHIG00000021471	MAP7D2 (ENSCHIG00000007458) ##21	BCLAF3 (ENSCHIG00000025713) ##22	ENSCHIG00000002946	TLR8 (ENSCHIG00000016625)	TLR7 (ENSCHIG00000021012)	PRPS2 (ENSCHIG00000006680)	ENSCHIG00000019669	ENSCHIG00000016862	ADGRG2 (ENSCHIG00000012482)	ENSCHIG00000012595	PPEF1 (ENSCHIG00000017281)	RS1 (ENSCHIG00000022783)	CDKL5 (ENSCHIG00000010574)	ENSCHIG00000023671	ENSCHIG00000014610	ENSCHIG00000019919	ENSCHIG00000008394
Camelidae	ANCESTRAL SPECIES	59	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00510000047522	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164589	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080
Arabian camel	MODERN SPECIES	204	ACOT9 (ENSCDRG00005021651)	PRDX4 (ENSCDRG00005021642)	ENSCDRG00005021636	PTCHD1 (ENSCDRG00005021635)	ENSCDRG00005021631	PHEX (ENSCDRG00005021620)	SMS (ENSCDRG00005021617)	MBTPS2 (ENSCDRG00005021615)	ENSCDRG00005021614	SMPX (ENSCDRG00005021613)	KLHL34 (ENSCDRG00005021612)	CNKSR2 (ENSCDRG00005021599)	RPS6KA3 (ENSCDRG00005021577)	EIF1AX (ENSCDRG00005021559)	MAP7D2 (ENSCDRG00005021545) ##21	BCLAF3 (ENSCDRG00005021538) ##22	SH3KBP1 (ENSCDRG00005021507)	PDHA1 (ENSCDRG00005021482)	ADGRG2 (ENSCDRG00005016282)	PHKA2 (ENSCDRG00005015770)	PPEF1 (ENSCDRG00005015683)	RS1 (ENSCDRG00005015612)	ENSCDRG00005015576	CDKL5 (ENSCDRG00005015479)	SCML2 (ENSCDRG00005015356)	RAI2 (ENSCDRG00005015229)	SCML1 (ENSCDRG00005015136)	NHS (ENSCDRG00005014939)	REPS2 (ENSCDRG00005014399)	RBBP7 (ENSCDRG00005014158)	ENSCDRG00005014067
Alpaca	MODERN SPECIES	5443																BCLAF3 (ENSVPAG00000007783) ##22
Laurasiatheria_b	ANCESTRAL SPECIES	10	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00540000073670	ENSGT00940000158080
Carnivora	ANCESTRAL SPECIES	11	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT01000000221142	ENSGT00540000073670
Caniformia	ANCESTRAL SPECIES	26	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.s	ENSGT00940000167584.b	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT01000000221142	ENSGT00540000073670
Caniformia_b	ANCESTRAL SPECIES	24	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.s	ENSGT00940000167584.b	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Ursidae	ANCESTRAL SPECIES	28	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.s	ENSGT00940000167584.b	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181.f	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Ursus	ANCESTRAL SPECIES	47	ENSGT00940000156003	ENSGT00550000074844	ENSGT01070000253775.a.d.a.a.a.b	ENSGT00510000047522	ENSGT00950000186265	ENSGT01070000253775.a.d.a.a.a.a.k	ENSGT00940000157313	ENSGT00870000136506.s	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181.f	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463	ENSGT00390000007662
American black bear	DUPLICATION
American black bear	MODERN SPECIES	5360														MAP7D2 (ENSUAMG00000021446) ##21	ENSUAMG00000021445 ##22	ENSUAMG00000021444 ##22
American black bear	MODERN SPECIES	5360															MAP7D2 (ENSUAMG00000021446) ##21	ENSUAMG00000021445 ##22	ENSUAMG00000021444 ##22
Polar bear	MODERN SPECIES	199	PRDX4 (ENSUMAG00000011507)	ENSUMAG00000011461	PTCHD1 (ENSUMAG00000011456)	ENSUMAG00000011448	ENSUMAG00000011422	ENSUMAG00000011412	PHEX (ENSUMAG00000011248)	SMS (ENSUMAG00000011225)	ENSUMAG00000011222	MBTPS2 (ENSUMAG00000011194)	SMPX (ENSUMAG00000011168)	CNKSR2 (ENSUMAG00000010845)	RPS6KA3 (ENSUMAG00000010772)	ENSUMAG00000010717	MAP7D2 (ENSUMAG00000010703) ##21	BCLAF3 (ENSUMAG00000010697) ##22	SH3KBP1 (ENSUMAG00000010682)	MAP3K15 (ENSUMAG00000010492)	PDHA1 (ENSUMAG00000010424)	ADGRG2 (ENSUMAG00000010103)	PHKA2 (ENSUMAG00000009067)	PPEF1 (ENSUMAG00000008931)	RS1 (ENSUMAG00000008917)	CDKL5 (ENSUMAG00000008854)	SCML2 (ENSUMAG00000008801)	ENSUMAG00000008787	NHS (ENSUMAG00000008784)	REPS2 (ENSUMAG00000008763)	RBBP7 (ENSUMAG00000008756)	TXLNG (ENSUMAG00000008747)	SYAP1 (ENSUMAG00000008735)
Giant Panda	MODERN SPECIES	2288	ACOT9 (ENSAMEG00000012778)	PRDX4 (ENSAMEG00000012797)	ENSAMEG00000026223	PTCHD1 (ENSAMEG00000014696)	ENSAMEG00000019953	ENSAMEG00000011652	PHEX (ENSAMEG00000016398)	SMS (ENSAMEG00000016423)	ENSAMEG00000016444	SMPX (ENSAMEG00000016467)	KLHL34 (ENSAMEG00000016476)	CNKSR2 (ENSAMEG00000016482)	RPS6KA3 (ENSAMEG00000016514)	ENSAMEG00000028944	MAP7D2 (ENSAMEG00000016615) ##21	BCLAF3 (ENSAMEG00000016629) ##22	SH3KBP1 (ENSAMEG00000016636)	MAP3K15 (ENSAMEG00000016682)	PDHA1 (ENSAMEG00000016730)	ADGRG2 (ENSAMEG00000016754)	PHKA2 (ENSAMEG00000016774)	PPEF1 (ENSAMEG00000016806)	RS1 (ENSAMEG00000016826)	CDKL5 (ENSAMEG00000016835)	SCML2 (ENSAMEG00000016850)	ENSAMEG00000029358	RAI2 (ENSAMEG00000018565)	ENSAMEG00000002958	NHS (ENSAMEG00000010138)	REPS2 (ENSAMEG00000010165)	RBBP7 (ENSAMEG00000010201)
Mustelinae	ANCESTRAL SPECIES	56	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00950000185291	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.s	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
American mink	MODERN SPECIES	42															ENSNVIG00000001808 ##21	BCLAF3 (ENSNVIG00000001781) ##22	SH3KBP1 (ENSNVIG00000001649)	MAP3K15 (ENSNVIG00000001576)	ENSNVIG00000001566	ENSNVIG00000001555	ADGRG2 (ENSNVIG00000000398)	PHKA2 (ENSNVIG00000000195)	PPEF1 (ENSNVIG00000000126)	RS1 (ENSNVIG00000000088)	ENSNVIG00000020953	CDKL5 (ENSNVIG00000020913)	SCML2 (ENSNVIG00000020875)	ENSNVIG00000020854	ENSNVIG00000020836	ENSNVIG00000020825	NHS (ENSNVIG00000020801)
Ferret	MODERN SPECIES	229												ENSMPUG00000003816	RPS6KA3 (ENSMPUG00000003384)	EIF1AX (ENSMPUG00000003337)	MAP7D2 (ENSMPUG00000003325) ##21	BCLAF3 (ENSMPUG00000003312) ##22	SH3KBP1 (ENSMPUG00000003301)	ENSMPUG00000003295	ENSMPUG00000003281	PDHA1 (ENSMPUG00000003269)	ADGRG2 (ENSMPUG00000003173)	PHKA2 (ENSMPUG00000002957)	PPEF1 (ENSMPUG00000002945)	RS1 (ENSMPUG00000002912)	CDKL5 (ENSMPUG00000002901)	ENSMPUG00000002898	ENSMPUG00000002872	SCML2 (ENSMPUG00000002862)	ENSMPUG00000002856	RAI2 (ENSMPUG00000019017)	ENSMPUG00000002840
Canidae	ANCESTRAL SPECIES	26	ENSGT00530000063666.b.z	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT01090000260070.A	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT01000000221142
Canis_lupus	ANCESTRAL SPECIES	26	ENSGT00530000063666.b.y.a.b.a	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506.r.b	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT01090000260070.A	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT01000000221142
Dog	MODERN SPECIES	144	APOO (ENSCAFG00845030303)	SAT1 (ENSCAFG00845030292)	ACOT9 (ENSCAFG00845030245)	PRDX4 (ENSCAFG00845030129)	PTCHD1 (ENSCAFG00845030096)	ENSCAFG00845030087	PHEX (ENSCAFG00845029993)	ENSCAFG00845029922	MBTPS2 (ENSCAFG00845029854)	SMPX (ENSCAFG00845029832)	KLHL34 (ENSCAFG00845029813)	CNKSR2 (ENSCAFG00845029599)	RPS6KA3 (ENSCAFG00845029219)	EIF1AX (ENSCAFG00845029014)	MAP7D2 (ENSCAFG00845028966) ##21	BCLAF3 (ENSCAFG00845028801) ##22	SH3KBP1 (ENSCAFG00845028384)	MAP3K15 (ENSCAFG00845028166)	PDHA1 (ENSCAFG00845028035)	ENSCAFG00845028004	ADGRG2 (ENSCAFG00845027443)	PHKA2 (ENSCAFG00845026195)	PPEF1 (ENSCAFG00845025770)	RS1 (ENSCAFG00845025646)	ENSCAFG00845025606	CDKL5 (ENSCAFG00845025238)	ENSCAFG00845025153	SCML2 (ENSCAFG00845024846)	ENSCAFG00845024469	RAI2 (ENSCAFG00845030999)	SCML1 (ENSCAFG00845030994)
Dingo	MODERN SPECIES	217	SAT1 (ENSCAFG00020005373)	ACOT9 (ENSCAFG00020005354)	PRDX4 (ENSCAFG00020005348)	PTCHD1 (ENSCAFG00020005326)	ENSCAFG00020005312	ENSCAFG00020005279	PHEX (ENSCAFG00020005217)	ENSCAFG00020005174	MBTPS2 (ENSCAFG00020005119)	SMPX (ENSCAFG00020005104)	CNKSR2 (ENSCAFG00020004670)	ENSCAFG00020004620	RPS6KA3 (ENSCAFG00020004599)	EIF1AX (ENSCAFG00020004588)	MAP7D2 (ENSCAFG00020004579) ##21	ENSCAFG00020004575 ##22	SH3KBP1 (ENSCAFG00020004559)	MAP3K15 (ENSCAFG00020004533)	PDHA1 (ENSCAFG00020004526)	ADGRG2 (ENSCAFG00020004286)	PHKA2 (ENSCAFG00020004228)	PPEF1 (ENSCAFG00020004211)	RS1 (ENSCAFG00020004187)	ENSCAFG00020004181	CDKL5 (ENSCAFG00020004060)	SCML2 (ENSCAFG00020004011)	RAI2 (ENSCAFG00020004001)	NHS (ENSCAFG00020003950)	ENSCAFG00020003937	ENSCAFG00020003924	REPS2 (ENSCAFG00020003791)
Red fox	MODERN SPECIES	24	ACOT9 (ENSVVUG00000012758)	PRDX4 (ENSVVUG00000012770)	PTCHD1 (ENSVVUG00000012785)	ENSVVUG00000012789	PHEX (ENSVVUG00000012831)	ENSVVUG00000012939	MBTPS2 (ENSVVUG00000012954)	SMPX (ENSVVUG00000012956)	ENSVVUG00000012959	CNKSR2 (ENSVVUG00000012970)	ENSVVUG00000012984	ENSVVUG00000012987	RPS6KA3 (ENSVVUG00000013013)	EIF1AX (ENSVVUG00000013024)	MAP7D2 (ENSVVUG00000013035) ##21	BCLAF3 (ENSVVUG00000013082) ##22	SH3KBP1 (ENSVVUG00000013144)	ENSVVUG00000013205	ENSVVUG00000013215	MAP3K15 (ENSVVUG00000013244)	PDHA1 (ENSVVUG00000013392)	ADGRG2 (ENSVVUG00000013420)	PPEF1 (ENSVVUG00000014157)	ENSVVUG00000014199	CDKL5 (ENSVVUG00000014210)	ENSVVUG00000014243	ENSVVUG00000014245	SCML2 (ENSVVUG00000014250)	ENSVVUG00000014260	ENSVVUG00000014283	RAI2 (ENSVVUG00000014289)
Felidae	ANCESTRAL SPECIES	12	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000153680.a	ENSGT00390000018687	ENSGT00990000213085	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT01030000235848	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT01000000221142	ENSGT00540000073670	ENSGT00940000158080
Panthera	ANCESTRAL SPECIES	41												ENSGT01030000235848	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT01090000260070.A	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT01000000221142	ENSGT00540000073670	ENSGT00510000046986.v.b.b.b
Tiger	MODERN SPECIES	323												ENSPTIG00000015099	RPS6KA3 (ENSPTIG00000013422)	ENSPTIG00000012582	MAP7D2 (ENSPTIG00000009089) ##21	BCLAF3 (ENSPTIG00000006480) ##22	MAP3K15 (ENSPTIG00000021189)	PDHA1 (ENSPTIG00000019524)	ADGRG2 (ENSPTIG00000007761)	PHKA2 (ENSPTIG00000004654)	PPEF1 (ENSPTIG00000020149)	RS1 (ENSPTIG00000019847)	CDKL5 (ENSPTIG00000018564)	ENSPTIG00000017604
Panthera_a	ANCESTRAL SPECIES	40													ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000158222.ib.b	ENSGT00390000009320.cb	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00950000182963.b.a	ENSGT01000000221142	ENSGT00540000073670
lion	MODERN SPECIES	88	ENSPLOG00000021686	ENSPLOG00000021673	BCOR (ENSPLOG00000021643)	MID1IP1 (ENSPLOG00000021611)	TSPAN7 (ENSPLOG00000021583)	OTC (ENSPLOG00000021548)	ENSPLOG00000021386	SYTL5 (ENSPLOG00000021282)	ENSPLOG00000021262	ENSPLOG00000021250	DYNLT3 (ENSPLOG00000021233)	CYBB (ENSPLOG00000021184)	RPS6KA3 (ENSPLOG00000021031)	EIF1AX (ENSPLOG00000020933)	MAP7D2 (ENSPLOG00000020581) ##21	BCLAF3 (ENSPLOG00000020503) ##22	SH3KBP1 (ENSPLOG00000020327)	MAP3K15 (ENSPLOG00000020043)	PDHA1 (ENSPLOG00000019955)	ENSPLOG00000019908	ENSPLOG00000019887	ADGRG2 (ENSPLOG00000017564)	PHKA2 (ENSPLOG00000016957)	PPEF1 (ENSPLOG00000016638)	RS1 (ENSPLOG00000016497)	ENSPLOG00000016465	CDKL5 (ENSPLOG00000016436)	SCML2 (ENSPLOG00000016350)	RAI2 (ENSPLOG00000016300)	NHS (ENSPLOG00000016019)	ENSPLOG00000015961
leopard	MODERN SPECIES	139												ENSPPRG00000008049	RPS6KA3 (ENSPPRG00000008105)	ENSPPRG00000008180	MAP7D2 (ENSPPRG00000008395) ##21	BCLAF3 (ENSPPRG00000008464) ##22	SH3KBP1 (ENSPPRG00000008569)	MAP3K15 (ENSPPRG00000008639)	PDHA1 (ENSPPRG00000008782)	ENSPPRG00000008810	ADGRG2 (ENSPPRG00000010256)	PHKA2 (ENSPPRG00000010549)	PPEF1 (ENSPPRG00000010688)	RS1 (ENSPPRG00000010703)	CDKL5 (ENSPPRG00000010754)	ENSPPRG00000010762	ENSPPRG00000010766
Cat	MODERN SPECIES	252	ENSFCAG00000034636	PTCHD1 (ENSFCAG00000031503)	ENSFCAG00000049112	ENSFCAG00000038497	ENSFCAG00000051651	PHEX (ENSFCAG00000023221)	SMS (ENSFCAG00000002434)	MBTPS2 (ENSFCAG00000029861)	SMPX (ENSFCAG00000037718)	CNKSR2 (ENSFCAG00000026807)	ENSFCAG00000049761	ENSFCAG00000053775	RPS6KA3 (ENSFCAG00000010795)	EIF1AX (ENSFCAG00000035249)	MAP7D2 (ENSFCAG00000010791) ##21	BCLAF3 (ENSFCAG00000003909) ##22	SH3KBP1 (ENSFCAG00000003908)	MAP3K15 (ENSFCAG00000012906)	PDHA1 (ENSFCAG00000012903)	ENSFCAG00000006395	ADGRG2 (ENSFCAG00000018328)	PHKA2 (ENSFCAG00000001529)	PPEF1 (ENSFCAG00000001528)	RS1 (ENSFCAG00000037717)	ENSFCAG00000026145	CDKL5 (ENSFCAG00000001075)	SCML2 (ENSFCAG00000006438)	ENSFCAG00000053338	ENSFCAG00000047052	ENSFCAG00000043428	NHS (ENSFCAG00000000186)
Laurasiatheria_c	ANCESTRAL SPECIES	10	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Chiroptera	ANCESTRAL SPECIES	25	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C	ENSGT00940000155463
Megabat	MODERN SPECIES	8011																BCLAF3 (ENSPVAG00000003683) ##22
Microchiroptera	ANCESTRAL SPECIES	25	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00540000073670	ENSGT00940000154748.C
Microbat	MODERN SPECIES	986													RPS6KA3 (ENSMLUG00000012980)	ENSMLUG00000012977	MAP7D2 (ENSMLUG00000012967) ##21	BCLAF3 (ENSMLUG00000012956) ##22	SH3KBP1 (ENSMLUG00000012949)	ENSMLUG00000025007	MAP3K15 (ENSMLUG00000012936)	PDHA1 (ENSMLUG00000012932)	ENSMLUG00000011884	ENSMLUG00000030082	ADGRG2 (ENSMLUG00000005218)	SCARB1 (ENSMLUG00000002680)	PHKA2 (ENSMLUG00000015264)	PPEF1 (ENSMLUG00000005487)	RS1 (ENSMLUG00000006836)	CDKL5 (ENSMLUG00000006808)	SCML2 (ENSMLUG00000015450)	RAI2 (ENSMLUG00000015416)	ENSMLUG00000029397
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010003295	ENSRFEG00010003306	ENSRFEG00010007348	ENSRFEG00010007428	PHEX (ENSRFEG00010007442)	ENSRFEG00010007656	MBTPS2 (ENSRFEG00010007702)	ENSRFEG00010007751	SMPX (ENSRFEG00010007815)	KLHL34 (ENSRFEG00010007846)	CNKSR2 (ENSRFEG00010007889)	ENSRFEG00010008206	RPS6KA3 (ENSRFEG00010008249)	EIF1AX (ENSRFEG00010008355)	MAP7D2 (ENSRFEG00010008522) ##21	BCLAF3 (ENSRFEG00010008652) ##22	SH3KBP1 (ENSRFEG00010008770)	MAP3K15 (ENSRFEG00010009034)	PDHA1 (ENSRFEG00010009265)	ADGRG2 (ENSRFEG00010009414)	PHKA2 (ENSRFEG00010009773)	PPEF1 (ENSRFEG00010009902)	RS1 (ENSRFEG00010010035)	CDKL5 (ENSRFEG00010010106)	SCML2 (ENSRFEG00010010166)	ENSRFEG00010010207	RAI2 (ENSRFEG00010010245)	ENSRFEG00010010269	NHS (ENSRFEG00010010332)	ENSRFEG00010010721	REPS2 (ENSRFEG00010010751)
Equus	ANCESTRAL SPECIES	48	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00940000167584.b	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT01090000261388	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080
Donkey	MODERN SPECIES	36	SAT1 (ENSEASG00005026493)	ACOT9 (ENSEASG00005004784)	PRDX4 (ENSEASG00005004804)	PTCHD1 (ENSEASG00005032723)	ENSEASG00005034757	ENSEASG00005037356	PHEX (ENSEASG00005023744)	SMS (ENSEASG00005020046)	ENSEASG00005020041	SMPX (ENSEASG00005007668)	KLHL34 (ENSEASG00005037044)	CNKSR2 (ENSEASG00005007178)	RPS6KA3 (ENSEASG00005014705)	EIF1AX (ENSEASG00005009834)	MAP7D2 (ENSEASG00005014697) ##21	ENSEASG00005014696 ##22	ENSEASG00005034136	ENSEASG00005035168	SH3KBP1 (ENSEASG00005014314)	MAP3K15 (ENSEASG00005014304)	PDHA1 (ENSEASG00005014303)	ADGRG2 (ENSEASG00005014281)	ENSEASG00005025600	PPEF1 (ENSEASG00005022499)	RS1 (ENSEASG00005022504)	CDKL5 (ENSEASG00005022515)	SCML2 (ENSEASG00005022494)	ENSEASG00005027646	ENSEASG00005000808	ENSEASG00005000797	ENSEASG00005032700
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183163.b ##22
Hedgehog	MODERN SPECIES	6885																BCLAF3 (ENSEEUG00000012513) ##22
Common shrew	MODERN SPECIES	5368																ENSSARG00000013789 ##22
Atlantogenata	ANCESTRAL SPECIES	50	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Xenarthra	ANCESTRAL SPECIES	165							ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407
Sloth	MODERN SPECIES	6118																BCLAF3 (ENSCHOG00000010999) ##22
Armadillo	MODERN SPECIES	729	ZNF383 (ENSDNOG00000044355)	ZNF875 (ENSDNOG00000033077)	ENSDNOG00000040925	ENSDNOG00000032914	ENSDNOG00000041572	PHEX (ENSDNOG00000002993)	SMS (ENSDNOG00000006712)	MBTPS2 (ENSDNOG00000033022)	SMPX (ENSDNOG00000016757)	KLHL34 (ENSDNOG00000033922)	CNKSR2 (ENSDNOG00000000614)	ENSDNOG00000031647	RPS6KA3 (ENSDNOG00000003310)	EIF1AX (ENSDNOG00000045675)	MAP7D2 (ENSDNOG00000017855) ##21	BCLAF3 (ENSDNOG00000045492) ##22	SH3KBP1 (ENSDNOG00000016477)	MAP3K15 (ENSDNOG00000007828)	PDHA1 (ENSDNOG00000008462)	ADGRG2 (ENSDNOG00000012455)	PHKA2 (ENSDNOG00000012404)	PPEF1 (ENSDNOG00000031966)	RS1 (ENSDNOG00000002498)	ENSDNOG00000041458	CDKL5 (ENSDNOG00000002494)	SCML2 (ENSDNOG00000002390)
Afrotheria	ANCESTRAL SPECIES	66	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Afrotheria_a	ANCESTRAL SPECIES	64	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000164183	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a.i	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000161181	ENSGT00940000157355	ENSGT00940000159407	ENSGT00940000163807	ENSGT00940000154164.d	ENSGT00940000164165	ENSGT00950000182963.b.a	ENSGT00940000158080	ENSGT00940000154748.C
Elephant	MODERN SPECIES	369	SAT1 (ENSLAFG00000003153)	ACOT9 (ENSLAFG00000003152)	PRDX4 (ENSLAFG00000002686)	PTCHD1 (ENSLAFG00000022742)	ENSLAFG00000011531	ENSLAFG00000010569	PHEX (ENSLAFG00000010566)	SMS (ENSLAFG00000003543)	MBTPS2 (ENSLAFG00000017242)	SMPX (ENSLAFG00000001873)	KLHL34 (ENSLAFG00000007404)	CNKSR2 (ENSLAFG00000007401)	RPS6KA3 (ENSLAFG00000007020)	EIF1AX (ENSLAFG00000007016)	MAP7D2 (ENSLAFG00000023306) ##21	BCLAF3 (ENSLAFG00000008518) ##22	SH3KBP1 (ENSLAFG00000009756)	MAP3K15 (ENSLAFG00000009429)	PDHA1 (ENSLAFG00000009426)	ENSLAFG00000026076	ADGRG2 (ENSLAFG00000009428)	PHKA2 (ENSLAFG00000009425)	ENSLAFG00000009424	RS1 (ENSLAFG00000009423)	CDKL5 (ENSLAFG00000009417)	ENSLAFG00000027704	ENSLAFG00000011808	ENSLAFG00000011802	RAI2 (ENSLAFG00000014793)	ENSLAFG00000017074	NHS (ENSLAFG00000017062)
Hyrax	MODERN SPECIES	5682													RPS6KA3 (ENSPCAG00000009212)	EIF1AX (ENSPCAG00000009150)	MAP7D2 (ENSPCAG00000009074) ##21	BCLAF3 (ENSPCAG00000009021) ##22
Tenrec	MODERN SPECIES	6705																ENSETEG00000003699 ##22
Platypus	MODERN SPECIES	6	KLHL15 (ENSOANG00000009137)	ENSOANG00000028526	APOO (ENSOANG00000014705)	SAT1 (ENSOANG00000011507)	ACOT9 (ENSOANG00000012276)	ENSOANG00000012275	PTCHD1 (ENSOANG00000010652)	PHEX (ENSOANG00000010653)	SMS (ENSOANG00000010654)	MBTPS2 (ENSOANG00000044594)	SMPX (ENSOANG00000038957)	CNKSR2 (ENSOANG00000010656)	RPS6KA3 (ENSOANG00000010658)	EIF1AX (ENSOANG00000048193)	MAP7D2 (ENSOANG00000004016) ##21	BCLAF3 (ENSOANG00000004022) ##22	SH3KBP1 (ENSOANG00000039084)	MAP3K15 (ENSOANG00000004027)	ENSOANG00000004029	ADGRG2 (ENSOANG00000004030)	PHKA2 (ENSOANG00000004031)	ENSOANG00000038719	PPEF1 (ENSOANG00000004036)	RS1 (ENSOANG00000005828)	CDKL5 (ENSOANG00000004037)	ARSD (ENSOANG00000004038)	ENSOANG00000004040	ENSOANG00000004042	ARSF (ENSOANG00000004043)	ENSOANG00000004044	PRKX (ENSOANG00000004046)
Anura	ANCESTRAL SPECIES	187							ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a	ENSGT00940000156341	ENSGT00950000183118.A.c.a	ENSGT00940000159830	ENSGT00940000157355.g
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000000402	ENSLLEG00000000415	PHEX (ENSLLEG00000000437)	SMS (ENSLLEG00000000492)	ENSLLEG00000000511	SMPX (ENSLLEG00000000522)	KLHL34 (ENSLLEG00000000544)	CNKSR2 (ENSLLEG00000000621)	ENSLLEG00000000962	RPS6KA3 (ENSLLEG00000001162)	ENSLLEG00000002775	ENSLLEG00000002780	ENSLLEG00000002796	MAP7D2 (ENSLLEG00000002847) ##21	ENSLLEG00000002949	BCLAF3 (ENSLLEG00000002957) ##22	ENSLLEG00000002975	SH3KBP1 (ENSLLEG00000002987)	ENSLLEG00000003017	MAP3K15 (ENSLLEG00000003042)	ENSLLEG00000003143	ENSLLEG00000003249	ADGRG2 (ENSLLEG00000003267)	ENSLLEG00000003325	PHKA2 (ENSLLEG00000003359)	ENSLLEG00000003593	PPEF1 (ENSLLEG00000003604)	ENSLLEG00000003634	ENSLLEG00000003641	ENSLLEG00000003654	CDKL5 (ENSLLEG00000003678)
Frog	MODERN SPECIES	2	phka1p1 (ENSXETG00000006756)	ENSXETG00000044429	ppef1 (ENSXETG00000006754)	ptchd1 (ENSXETG00000037296)	phex (ENSXETG00000038825)	sms (ENSXETG00000003857)	mbtps2 (ENSXETG00000025771)	smpx (ENSXETG00000032462)	klhl34 (ENSXETG00000003854)	ENSXETG00000043747	cnksr2 (ENSXETG00000010286)	rps6ka3 (ENSXETG00000010285)	ENSXETG00000039947	eif1ax (ENSXETG00000034472)	map7d2 (ENSXETG00000006203) ##21	bclaf3 (ENSXETG00000031425) ##22	ENSXETG00000048959	sh3kbp1 (ENSXETG00000006205)	map3k15 (ENSXETG00000006210)	atg16l2 (ENSXETG00000006212)	klhl15 (ENSXETG00000034785)	cxorf58 (ENSXETG00000025336)	apoo (ENSXETG00000006218)	sat1 (ENSXETG00000006219)	arsd (ENSXETG00000006221)	acot9 (ENSXETG00000006223)	adamts3 (ENSXETG00000006225)	zfx (ENSXETG00000007785)	gdpd1 (ENSXETG00000007786)	mpo (ENSXETG00000007787)	tspoap1 (ENSXETG00000034008)
Coelacanth	MODERN SPECIES	697													EIF1AX (ENSLACG00000015565)	MAP7D2 (ENSLACG00000015065) ##21	b4galt4 (ENSLACG00000014768)	BCLAF3 (ENSLACG00000014449) ##22	SH3KBP1 (ENSLACG00000012761)	ENSLACG00000012638	MAP3K15 (ENSLACG00000011038)	pdha1b (ENSLACG00000010769)	ADGRG2 (ENSLACG00000007443)	GRPR (ENSLACG00000001274)
Actinopterygii	ANCESTRAL SPECIES	26	ENSGT00530000063666.b	ENSGT00950000183121.b.b.b.b	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00940000157080	ENSGT00940000157313	ENSGT00870000136506	ENSGT00510000048066	ENSGT00390000017542	ENSGT00940000162424	ENSGT00940000156709	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000155886	ENSGT00940000159562	ENSGT00530000063174.a
Neopterygii	ANCESTRAL SPECIES	459												ENSGT01030000235848	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b ##21	ENSGT00950000183163.b ##22
Osteoglossocephalai	ANCESTRAL SPECIES	99	ENSGT01050000244950.a.a.a	ENSGT00440000034309	ENSGT01050000244868	ENSGT00940000164731	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00530000063174.a.k
Clupeocephala	ANCESTRAL SPECIES	207	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00390000014424	ENSGT00940000155647.bb	ENSGT00950000182962.a.a.c	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l	ENSGT00940000159370	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b
Otomorpha	ANCESTRAL SPECIES	107	ENSGT00940000156558.a.b	ENSGT00940000165845.c.b	ENSGT00940000154826	ENSGT00940000155717	ENSGT00940000164731.k	ENSGT00940000167353	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l	ENSGT00940000159370.c	ENSGT00940000159370.d	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00950000182941.b.b.b.a ##21	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b	ENSGT01030000234590.B.a.a.e.a	ENSGT00940000153916.A.a	ENSGT00940000165992.a.b	ENSGT00940000153783.b.a.a.b	ENSGT00940000156309.B.g	ENSGT01040000240503.B	ENSGT00940000166995	ENSGT00390000004049
Otophysi	ANCESTRAL SPECIES	47	ENSGT00940000154473.b.a.a	ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k	ENSGT00940000159370.d	ENSGT00390000008256.rd.a	ENSGT00980000201894	ENSGT00390000008256.sd	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000007133	ENSGT00390000004601	ENSGT00940000160633.a.a	ENSGT00550000074891	ENSGT00940000156040.e	ENSGT01030000234646.B.a.b	ENSGT00940000163831.e	ENSGT00940000153716.A.k	ENSGT00730000111111
Characiphysae	ANCESTRAL SPECIES	17	ENSGT00940000154004.a.e.b	ENSGT00940000159294	ENSGT00940000157658	ENSGT00390000014100.k.a	ENSGT00940000153141.B.b	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k	ENSGT00940000159370.d	ENSGT00390000008256.rd.b	ENSGT00980000201894	ENSGT00390000008256.sd	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00390000017765.b	ENSGT00940000159385.a.a	ENSGT00940000154936	ENSGT00940000176911	ENSGT00940000154103.a
Channel catfish	MODERN SPECIES	15	sgk3 (ENSIPUG00000014487)	mybl1 (ENSIPUG00000014428)	rrs1 (ENSIPUG00000014412)	ENSIPUG00000014385	trim55 (ENSIPUG00000014351)	DNAJC5B (ENSIPUG00000014336)	pde7a (ENSIPUG00000014264)	mtfr1 (ENSIPUG00000014219)	armc1 (ENSIPUG00000014207)	bhlhe22 (ENSIPUG00000014202)	YTHDF1 (ENSIPUG00000014157)	pdha1b (ENSIPUG00000014101)	RPS6KA3 (ENSIPUG00000013955)	ENSIPUG00000013916	map7d2 (ENSIPUG00000013874) ##21	ENSIPUG00000013837 ##22	ENSIPUG00000013799	zgc:112408 (ENSIPUG00000013770)	Chodl (ENSIPUG00000013733)	c23h11orf65 (ENSIPUG00000013713)	si:rp71-1f1.4 (ENSIPUG00000013702)	apoob (ENSIPUG00000013681)	CNTNAP2 (ENSIPUG00000013587)	ENSIPUG00000013570	ENSIPUG00000013559	sec61g (ENSIPUG00000013553)	tpk1 (ENSIPUG00000013460)	panx1 (ENSIPUG00000013433)	CNTNAP2 (ENSIPUG00000013361)	ENSIPUG00000013337	hephl1a (ENSIPUG00000013290)
Characiphysae_b	ANCESTRAL SPECIES	52						ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k	ENSGT00940000159370.d	ENSGT00390000008256.rd.b	ENSGT00980000201894	ENSGT00390000008256.sd	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00390000017765.b	ENSGT00940000159385.a.a	ENSGT00940000154936	ENSGT00970000197361	ENSGT00940000154103.a
Electric eel	MODERN SPECIES	78	MCMDC2 (ENSEEEG00000009906)	sgk3 (ENSEEEG00000009946)	MYBL1 (ENSEEEG00000010531)	crhb (ENSEEEG00000010533)	trim55b (ENSEEEG00000010535)	DNAJC5B (ENSEEEG00000010541)	pde7a (ENSEEEG00000010552)	mtfr1 (ENSEEEG00000010649)	armc1 (ENSEEEG00000010651)	bhlhe22 (ENSEEEG00000010653)	ythdf3 (ENSEEEG00000010656)	rps6ka3b (ENSEEEG00000010781)	ENSEEEG00000013655	eif1axb (ENSEEEG00000013657)	ENSEEEG00000013658 ##21	zgc:112982 (ENSEEEG00000013662) ##22	ENSEEEG00000013663	zgc:112408 (ENSEEEG00000013673)	ENSEEEG00000013694	chodl (ENSEEEG00000013695)	ENSEEEG00000013696	apoob (ENSEEEG00000013698)	sat1b (ENSEEEG00000013700)	acot9.2 (ENSEEEG00000013706)	tagln3b (ENSEEEG00000013779)	ENSEEEG00000013780	c1qtnf9 (ENSEEEG00000013782)	ENSEEEG00000013786	ENSEEEG00000013787	ENSEEEG00000013836	flt1 (ENSEEEG00000013838)
Characoidei	ANCESTRAL SPECIES	14	ENSGT00940000157709.i	ENSGT00390000005213	ENSGT00940000154473.b.a.a	ENSGT00940000154004.a.e.b	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k	ENSGT00940000159370.d	ENSGT00980000201894	ENSGT00390000008256.sd	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000012054.a	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00390000017765.b	ENSGT00940000159385.a.a	ENSGT00940000154936	ENSGT00970000197361	ENSGT00940000154103.a
Red-bellied piranha	MODERN SPECIES	8	rrs1 (ENSPNAG00000021707)	ENSPNAG00000021695	trim55b (ENSPNAG00000021676)	DNAJC5B (ENSPNAG00000021634)	pde7a (ENSPNAG00000021598)	mtfr1 (ENSPNAG00000021553)	armc1 (ENSPNAG00000021521)	bhlhe22 (ENSPNAG00000006245)	ythdf3 (ENSPNAG00000021457)	pdha1b (ENSPNAG00000021432)	rps6ka3b (ENSPNAG00000021313)	ENSPNAG00000021247	eif1axb (ENSPNAG00000021235)	ENSPNAG00000021193 ##21	ENSPNAG00000021173	zgc:112982 (ENSPNAG00000021161) ##22	ENSPNAG00000021132	zgc:112408 (ENSPNAG00000021112)	ENSPNAG00000021084	lyz (ENSPNAG00000021068)	chodl (ENSPNAG00000021045)	ENSPNAG00000020982	apoob (ENSPNAG00000020954)	ATP8A2 (ENSPNAG00000020918)	SHISA2 (ENSPNAG00000020748)	spice1 (ENSPNAG00000020737)	ENSPNAG00000020724	boc (ENSPNAG00000020699)	USF3 (ENSPNAG00000020682)	naa50 (ENSPNAG00000020665)	ATP6V1A (ENSPNAG00000020631)
Mexicana tetra	MODERN SPECIES	18	ENSAMXG00000032945	trim55b (ENSAMXG00000013789)	DNAJC5B (ENSAMXG00000037384)	pde7a (ENSAMXG00000034112)	ENSAMXG00000029419	mtfr1 (ENSAMXG00000032269)	armc1 (ENSAMXG00000041843)	bhlhe22 (ENSAMXG00000026338)	ythdf3 (ENSAMXG00000030366)	pdha1b (ENSAMXG00000013896)	ENSAMXG00000030935	rps6ka3b (ENSAMXG00000013900)	ENSAMXG00000040423	eif1axb (ENSAMXG00000032495)	ENSAMXG00000013940 ##21	ENSAMXG00000013954 ##22	ENSAMXG00000013967	zgc:112408 (ENSAMXG00000013983)	ENSAMXG00000039498	ENSAMXG00000042503	lyz (ENSAMXG00000014017)	chodl (ENSAMXG00000014033)	ENSAMXG00000014069	si:rp71-1f1.4 (ENSAMXG00000032627)	apoob (ENSAMXG00000014089)	sat1b (ENSAMXG00000029966)	acot9.2 (ENSAMXG00000014122)	ENSAMXG00000035523	ENSAMXG00000034366	tagln3b (ENSAMXG00000030363)	TAGLN3 (ENSAMXG00000014160)
Cyprinoidei	ANCESTRAL SPECIES	20		ENSGT00940000154004.a.e.b	ENSGT00940000154473.a	ENSGT00940000159294	ENSGT00940000157658	ENSGT00950000183215.c.a.b	ENSGT00390000014100.k.b	ENSGT00940000162962	ENSGT00940000158777	ENSGT00530000063174.a.k	ENSGT00940000159370.d	ENSGT00390000008256.sd.a.b	ENSGT00980000201894	ENSGT00390000008256.sd.a.a	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000153832	ENSGT00940000157145	ENSGT00940000159227	ENSGT00390000001844.a.a	ENSGT00940000166463	ENSGT00390000007133	ENSGT00390000004601	ENSGT00940000160633.a.a	ENSGT00550000074891	ENSGT00390000005213	ENSGT00940000157709.i	ENSGT00940000153776.a.a	ENSGT01090000260080.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	45	ENSGT00940000163831.e.a	ENSGT01030000234646.B.a.b.c.a	ENSGT00940000156040.e.d	ENSGT00940000154004.a.e.b.e	ENSGT00940000154473.a.a.b	ENSGT00940000159294.c	ENSGT00940000157658.ib	ENSGT00950000183215.c.a.b.eb	ENSGT00390000014100.k.b.d	ENSGT00940000162962.a	ENSGT00940000158777.q	ENSGT00530000063174.a.k.b	ENSGT00940000159370.d.c	ENSGT00390000008256.sd.a.b	ENSGT00950000182941.b.b.b.b.a.a ##21	ENSGT00950000183163.b.i ##22	ENSGT00940000166938.a	ENSGT01030000234614.B.a.b.c	ENSGT00940000153832	ENSGT00390000001844.a.a.c	ENSGT00390000007133.a	ENSGT00390000004601.a	ENSGT00940000160633.a.a.a	ENSGT00550000074891.c	ENSGT00390000005213.b	ENSGT00940000157709.i.a.b	ENSGT00940000153776.a.a.h	ENSGT01090000260080.b.b.g	ENSGT00940000162447.e.b	ENSGT00940000158260.i	ENSGT00550000074850.x.a
Goldfish	MODERN SPECIES	43	slc51a (ENSCARG00000052714)	PDK3 (ENSCARG00000052772)	pcyt1ba (ENSCARG00000052996)	crhb (ENSCARG00000053003)	trim55b (ENSCARG00000053013)	DNAJC5B (ENSCARG00000053031)	pde7a (ENSCARG00000053100)	mtfr1 (ENSCARG00000054597)	armc1 (ENSCARG00000054617)	bhlhe22 (ENSCARG00000054642)	ythdf3 (ENSCARG00000054666)	pdha1b (ENSCARG00000054700)	rps6ka3b (ENSCARG00000055266)	eif1axb (ENSCARG00000056665)	ENSCARG00000056780 ##21	zgc:112982 (ENSCARG00000056812) ##22	ENSCARG00000056865	zgc:112408 (ENSCARG00000056892)	ENSCARG00000056923	chodl (ENSCARG00000056978)	ENSCARG00000056992	ENSCARG00000056994	ndufb4 (ENSCARG00000057018)	hgd (ENSCARG00000057042)	arxa (ENSCARG00000058049)	MYBL1 (ENSCARG00000018182)	sgk3 (ENSCARG00000018309)	MCMDC2 (ENSCARG00000019649)	TCF24 (ENSCARG00000019718)	ppp1r42 (ENSCARG00000019722)	cops5 (ENSCARG00000019738)
Cyprininae_a	ANCESTRAL SPECIES	71	ENSGT00940000163831.e.a	ENSGT01030000234646.B.a.b.c.a	ENSGT00940000156040.e.d	ENSGT00940000154004.a.e.b.e	ENSGT00940000154473.a.a.b	ENSGT00940000159294.c	ENSGT00940000157658.ib	ENSGT00950000183215.c.a.b.eb	ENSGT00390000014100.k.b.d	ENSGT00940000162962.a	ENSGT00940000158777.q	ENSGT00530000063174.a.k.b	ENSGT00940000159370.d.c	ENSGT00390000008256.sd.a.a	ENSGT00950000182941.b.b.b.b.a.a ##21	ENSGT00950000183163.b.i ##22	ENSGT00940000166938.a	ENSGT01030000234614.B.a.b.c	ENSGT00940000153832	ENSGT00390000001844.a.a.c	ENSGT00940000166463	ENSGT00390000007133.a	ENSGT00390000004601.a	ENSGT00940000160633.a.a.a	ENSGT00550000074891.c	ENSGT00390000005213.b	ENSGT00940000157709.i.a.b	ENSGT00940000153776.a.a.h	ENSGT01090000260080.b.b.g	ENSGT00940000162447.e.b	ENSGT00940000158260.i
Common carp reference	MODERN SPECIES	14	mtmr6 (ENSCCRG00000048847)	nup58 (ENSCCRG00000056775)	slc51a (ENSCCRG00000034761)	ENSCCRG00000060877	trim55b (ENSCCRG00000038445)	crhb (ENSCCRG00000066422)	DNAJC5B (ENSCCRG00000016411)	pde7a (ENSCCRG00000056545)	mtfr1 (ENSCCRG00000075207)	armc1 (ENSCCRG00000066459)	ythdf3 (ENSCCRG00000061877)	pdha1b (ENSCCRG00000061388)	rps6ka3b (ENSCCRG00000021404)	eif1axb (ENSCCRG00000008453)	MAP7D2 (ENSCCRG00000073438) ##21	zgc:112982 (ENSCCRG00000008429) ##22	ENSCCRG00000008420	zgc:112408 (ENSCCRG00000059313)	ENSCCRG00000062456	chodl (ENSCCRG00000048479)	ndufb4 (ENSCCRG00000081842)	hgd (ENSCCRG00000048424)	arxa (ENSCCRG00000014710)	pola1 (ENSCCRG00000025848)	MYBL1 (ENSCCRG00000048895)	sgk3 (ENSCCRG00000048901)	MCMDC2 (ENSCCRG00000014581)	TCF24 (ENSCCRG00000014586)	ppp1r42 (ENSCCRG00000014587)	pign (ENSCCRG00000014674)	cops5 (ENSCCRG00000014593)
Golden-line barbel	MODERN SPECIES	125	nup58 (ENSSGRG00000034792)	zdhhc20b (ENSSGRG00000034392)	ENSSGRG00000034153	pcyt1ba (ENSSGRG00000034150)	crhb (ENSSGRG00000034149)	trim55b (ENSSGRG00000034147)	pde7a (ENSSGRG00000033676)	mtfr1 (ENSSGRG00000033664)	armc1 (ENSSGRG00000033663)	bhlhe22 (ENSSGRG00000033661)	ythdf3 (ENSSGRG00000033651)	pdha1b (ENSSGRG00000033648)	rps6ka3b (ENSSGRG00000031400)	ENSSGRG00000031338	ENSSGRG00000031336 ##21	zgc:112982 (ENSSGRG00000031335) ##22	ENSSGRG00000031334	ENSSGRG00000031333	zgc:112408 (ENSSGRG00000031332)	lyz (ENSSGRG00000031330)	chodl (ENSSGRG00000031329)	ENSSGRG00000031327	ndufb4 (ENSSGRG00000031326)	hgd (ENSSGRG00000030715)	arxa (ENSSGRG00000030696)	pola1 (ENSSGRG00000029920)	rrs1 (ENSSGRG00000029903)	MYBL1 (ENSSGRG00000029902)	sgk3 (ENSSGRG00000028200)	MCMDC2 (ENSSGRG00000028170)	TCF24 (ENSSGRG00000028167)
Cyprininae	ANCESTRAL SPECIES	237	ENSGT00940000154473.a.a.a	ENSGT00940000159294.d	ENSGT00940000157658.hb	ENSGT00950000183215.c.a.b.db	ENSGT00390000014100.k.b.c	ENSGT00940000162962.b	ENSGT00940000158777.r	ENSGT00530000063174.a.k.a.a	ENSGT00940000159370.d.d	ENSGT00940000166443.d.b	ENSGT01020000230438.A.l	ENSGT00390000010337.A.g	ENSGT00950000182952.E.c	ENSGT00950000182904.a.a.b.a.a	ENSGT00390000008256.sd.b	ENSGT00950000183163.b.j ##22	ENSGT00940000166938.b	ENSGT01030000234614.B.a.b.d	ENSGT00940000159227	ENSGT00390000001844.a.a.d	ENSGT00940000166463	ENSGT00390000007133.b	ENSGT00390000004601.b	ENSGT00940000160633.a.a.b	ENSGT00550000074891.d	ENSGT00390000005213.a	ENSGT00940000157709.i.a.a	ENSGT00940000153776.a.a.g	ENSGT01090000260080.b.b.h	ENSGT00940000162447.e.a	ENSGT00940000158260.j
Goldfish	MODERN SPECIES	16	slc51a (ENSCARG00000068542)	ENSCARG00000068446	pcyt1ba (ENSCARG00000068411)	ENSCARG00000068406	crh (ENSCARG00000068404)	trim55b (ENSCARG00000068385)	DNAJC5B (ENSCARG00000068378)	pde7a (ENSCARG00000068164)	mtfr1 (ENSCARG00000068129)	armc1 (ENSCARG00000068118)	bhlhe22 (ENSCARG00000068109)	ythdf3 (ENSCARG00000068091)	rps6ka3b (ENSCARG00000062445)	ENSCARG00000062079	EIF1AX (ENSCARG00000061993)	zgc:112982 (ENSCARG00000061954) ##22	ENSCARG00000061818	zgc:112408 (ENSCARG00000061795)	lyz (ENSCARG00000061774)	chodl (ENSCARG00000061747)	ENSCARG00000061744	ndufb4 (ENSCARG00000061733)	hgd (ENSCARG00000061220)	arxa (ENSCARG00000061085)	ENSCARG00000061065	pola1 (ENSCARG00000058152)	rrs1 (ENSCARG00000057845)	MYBL1 (ENSCARG00000057724)	sgk3 (ENSCARG00000055740)	ENSCARG00000055639	TCF24 (ENSCARG00000055630)
Cyprininae_a	ANCESTRAL SPECIES	236	ENSGT00940000156040.e.c	ENSGT00940000154473.a.b	ENSGT00940000154004.a.e.b.f	ENSGT00940000154473.a.a.a	ENSGT00940000159294.d	ENSGT00940000157658.hb	ENSGT00950000183215.c.a.b.db	ENSGT00390000014100.k.b.c	ENSGT00940000162962.b	ENSGT00940000158777.r	ENSGT00530000063174.a.k.a.a	ENSGT00940000159370.d.d	ENSGT00940000166443.d.b	ENSGT00390000008256.rd.a	ENSGT00950000182941.b.b.b.b.b ##21	ENSGT00950000183163.b.j ##22	ENSGT00940000166938.b	ENSGT01030000234614.B.a.b.d	ENSGT00940000159227	ENSGT00390000001844.a.a.d	ENSGT00390000007133.b	ENSGT00390000004601.b	ENSGT00940000160633.a.a.b	ENSGT00550000074891.d	ENSGT00390000005213.a	ENSGT00940000157709.i.a.a	ENSGT00940000153776.a.a.g	ENSGT01090000260080.b.b.h	ENSGT00940000162447.e.a	ENSGT00940000158260.j	ENSGT00550000074850.x.b
Common carp reference	MODERN SPECIES	40	slc51a (ENSCCRG00000007658)	ENSCCRG00000034781	pcyt1ba (ENSCCRG00000000847)	trim55b (ENSCCRG00000052794)	crhb (ENSCCRG00000069183)	pde7a (ENSCCRG00000000324)	DNAJC5B (ENSCCRG00000063831)	mtfr1 (ENSCCRG00000038778)	armc1 (ENSCCRG00000070825)	bhlhe22 (ENSCCRG00000013499)	ythdf3 (ENSCCRG00000008411)	rps6ka3b (ENSCCRG00000008497)	ENSCCRG00000021339	EIF1AX (ENSCCRG00000021327)	MAP7D2 (ENSCCRG00000074939) ##21	zgc:112982 (ENSCCRG00000021324) ##22	ENSCCRG00000021256	zgc:112408 (ENSCCRG00000056445)	chodl (ENSCCRG00000061131)	ENSCCRG00000009158	ndufb4 (ENSCCRG00000062732)	hgd (ENSCCRG00000006738)	arxa (ENSCCRG00000064455)	pola1 (ENSCCRG00000048686)	rrs1 (ENSCCRG00000048892)	MYBL1 (ENSCCRG00000053303)	MYBL1 (ENSCCRG00000061325)	sgk3 (ENSCCRG00000014570)	MCMDC2 (ENSCCRG00000041365)	TCF24 (ENSCCRG00000041375)	ppp1r42 (ENSCCRG00000041379)
Golden-line barbel	MODERN SPECIES	84	ENSSGRG00000053069	pcyt1ba (ENSSGRG00000053061)	crhb (ENSSGRG00000053058)	trim55b (ENSSGRG00000053057)	DNAJC5B (ENSSGRG00000053056)	pde7a (ENSSGRG00000053044)	mtfr1 (ENSSGRG00000053043)	armc1 (ENSSGRG00000053042)	bhlhe22 (ENSSGRG00000053041)	ythdf3 (ENSSGRG00000053039)	pdha1b (ENSSGRG00000053038)	rps6ka3b (ENSSGRG00000052513)	ENSSGRG00000052497	eif1axb (ENSSGRG00000052419)	ENSSGRG00000052417 ##21	zgc:112982 (ENSSGRG00000052415) ##22	ENSSGRG00000052414	zgc:112408 (ENSSGRG00000052413)	lyz (ENSSGRG00000052409)	chodl (ENSSGRG00000052405)	ENSSGRG00000052403	hgd (ENSSGRG00000052378)	arxa (ENSSGRG00000052377)	pola1 (ENSSGRG00000052342)	rrs1 (ENSSGRG00000052338)	ENSSGRG00000052337	sgk3 (ENSSGRG00000051656)	MCMDC2 (ENSSGRG00000051649)	ppp1r42 (ENSSGRG00000051647)	ENSSGRG00000051645	ENSSGRG00000051644
Zebrafish	MODERN SPECIES	16	PDK3 (ENSDARG00000014527)	pcyt1ba (ENSDARG00000058162)	crhb (ENSDARG00000027657)	trim55b (ENSDARG00000058158)	DNAJC5B (ENSDARG00000058147)	pde7a (ENSDARG00000045305)	mtfr1 (ENSDARG00000045304)	armc1 (ENSDARG00000013861)	bhlhe22 (ENSDARG00000058039)	ythdf3 (ENSDARG00000057939)	pdha1b (ENSDARG00000010555)	rps6ka3b (ENSDARG00000057927)	ENSDARG00000087483	eif1axb (ENSDARG00000057912)	MAP7D2 (ENSDARG00000045316) ##21	zgc:112982 (ENSDARG00000001829) ##22	ENSDARG00000005332	zgc:112408 (ENSDARG00000016207)	ENSDARG00000062519	lyz (ENSDARG00000057789)	chodl (ENSDARG00000034528)	ENSDARG00000090346	ndufb4 (ENSDARG00000019332)	hgd (ENSDARG00000058005)	arxa (ENSDARG00000058011)	pola1 (ENSDARG00000045308)	rrs1 (ENSDARG00000003941)	MYBL1 (ENSDARG00000030999)	sgk3 (ENSDARG00000062460)	TCF24 (ENSDARG00000086944)	ppp1r42 (ENSDARG00000057632)
Clupeiformes	ANCESTRAL SPECIES	143	ENSGT01010000225766	ENSGT00940000165845.c.b	ENSGT00940000154826	ENSGT00940000155717	ENSGT01050000244868.f	ENSGT00940000164731.k	ENSGT01090000261942	ENSGT00530000063666.b.db	ENSGT00950000183121.b.b.b.b.x.b	ENSGT00950000183121.b.b.b.b.x.a	ENSGT00940000153430.a.a	ENSGT00530000063174.a.l	ENSGT00940000159370.d.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00950000182941.b.b.b.a ##21	ENSGT00940000177567	ENSGT00410000026585	ENSGT00390000010017	ENSGT00730000110966.a.b.b	ENSGT00930000151482	ENSGT00940000169096	ENSGT00550000074980
Denticle herring	MODERN SPECIES	11	camk2n2 (ENSDCDG00000026634)	KLHL24 (ENSDCDG00000026635)	SH3KBP1 (ENSDCDG00000026636)	MAP3K15 (ENSDCDG00000026641)	ccl20b (ENSDCDG00000026716)	tfr1b (ENSDCDG00000026723)	ENSDCDG00000026728	ENSDCDG00000026741	ENSDCDG00000026746	ENSDCDG00000026747	ENSDCDG00000026752	ENSDCDG00000000165	ENSDCDG00000000258	eif1axb (ENSDCDG00000000345)	ENSDCDG00000000360 ##21	ENSDCDG00000000385 ##22	ENSDCDG00000000416	zgc:112408 (ENSDCDG00000000429)	ENSDCDG00000000433	ENSDCDG00000000436	chodl (ENSDCDG00000000440)	ENSDCDG00000000455	ndufb4 (ENSDCDG00000000462)	hgd (ENSDCDG00000000540)	arxa (ENSDCDG00000000805)	pola1 (ENSDCDG00000000866)	pcyt1ba (ENSDCDG00000001309)	PDK3 (ENSDCDG00000001320)	ENSDCDG00000001348	ENSDCDG00000001376	ENSDCDG00000001379
Euteleosteomorpha	ANCESTRAL SPECIES	135	ENSGT00390000011600	ENSGT00510000046981.b.a.d	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000155920	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f	ENSGT00390000003738.b.d.a	ENSGT00940000154509	ENSGT00940000155893.a	ENSGT00890000139496.b
Acanthomorphata	ANCESTRAL SPECIES	144	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00950000185751	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01070000255370	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT00390000016814.a	ENSGT01070000253816.b.c
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT00990000210015	ENSGT00390000016814.a	ENSGT01070000253816.b.c
Percomorphaceae	ANCESTRAL SPECIES	67	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT00940000175682	ENSGT00990000210015	ENSGT00390000016814.a
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00940000163015	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT01020000230622	ENSGT00940000162944	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Pomacentridae	ANCESTRAL SPECIES	80	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.k	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794
Pomacentridae_A	ANCESTRAL SPECIES	114	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.l	ENSGT00390000005330.k	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.k.a.a	ENSGT01050000244843.c.a.a.a.a.a
Amphiprion	ANCESTRAL SPECIES	145	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000167146	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330.k	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794
Clown anemonefish	MODERN SPECIES	171																ENSAOCG00000015540 ##22	ENSAOCG00000015620	zgc:112408 (ENSAOCG00000015633)	si:ch73-264p11.1 (ENSAOCG00000001084)	ENSAOCG00000015695
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000004194	TNIK (ENSAPEG00000004265)	PLD1 (ENSAPEG00000004358)	ENSAPEG00000004692	ENSAPEG00000004761	ENSAPEG00000004810	eif2s3 (ENSAPEG00000004840)	klhl15 (ENSAPEG00000004899)	apoob (ENSAPEG00000004940)	sat1b (ENSAPEG00000004956)	ercc4 (ENSAPEG00000004992)	acot9.2 (ENSAPEG00000005026)	pdha1b (ENSAPEG00000005170)	rps6ka3b (ENSAPEG00000005334)	eif1axb (ENSAPEG00000005361)	ENSAPEG00000005388 ##22	ENSAPEG00000005437	zgc:112408 (ENSAPEG00000005537)	ENSAPEG00000005552	cip2a (ENSAPEG00000005607)	chrnd (ENSAPEG00000005864)	ENSAPEG00000005905	ENSAPEG00000005941	ENSAPEG00000005948	ENSAPEG00000005972	ENSAPEG00000006017	mbtps2 (ENSAPEG00000006028)	phex (ENSAPEG00000006079)	PTCHD1 (ENSAPEG00000006188)	DPP6 (ENSAPEG00000006264)	ggh (ENSAPEG00000006409)
Spiny chromis	MODERN SPECIES	2239														eif1axb (ENSAPOG00000005336)	MAP7D2 (ENSAPOG00000005295) ##21	ENSAPOG00000005256 ##22	ENSAPOG00000005230
Bicolor damselfish	MODERN SPECIES	379	ENSSPAG00000016936	TNIK (ENSSPAG00000016970)	PLD1 (ENSSPAG00000017147)	ENSSPAG00000017182	ENSSPAG00000017210	ENSSPAG00000017232	ENSSPAG00000017266	eif2s3 (ENSSPAG00000017292)	klhl15 (ENSSPAG00000017346)	apoob (ENSSPAG00000017433)	sat1b (ENSSPAG00000017441)	acot9.2 (ENSSPAG00000017464)	pdha1b (ENSSPAG00000017523)	rps6ka3b (ENSSPAG00000017578)	eif1axb (ENSSPAG00000017728)	ENSSPAG00000017763 ##22	ENSSPAG00000017805	zgc:112408 (ENSSPAG00000017869)	ENSSPAG00000017877	cip2a (ENSSPAG00000017905)	chrnd (ENSSPAG00000018044)	ENSSPAG00000018072	ENSSPAG00000018087	ENSSPAG00000018108	ENSSPAG00000018148	ENSSPAG00000018155	ENSSPAG00000018163	ENSSPAG00000018180	ENSSPAG00000018191	ENSSPAG00000018217	ENSSPAG00000018243
Cichlidae	ANCESTRAL SPECIES	79	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000163670.b.a.m
Pseudocrenilabrinae	ANCESTRAL SPECIES	52		ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	67	ENSGT00940000161266	ENSGT00730000111293.d	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Haplochromini	ANCESTRAL SPECIES	77	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Haplochromini_A	ANCESTRAL SPECIES	81	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000155015.g.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
P. nyererei	MODERN SPECIES	655				ENSPNYG00000001223	ENSPNYG00000001175	ENSPNYG00000001135	eif2s3 (ENSPNYG00000001094)	klhl15 (ENSPNYG00000001030)	apoob (ENSPNYG00000000880)	sat1b (ENSPNYG00000000840)	acot9.2 (ENSPNYG00000000825)	ENSPNYG00000024273	rps6ka3b (ENSPNYG00000024272)	ENSPNYG00000024271	eif1axb (ENSPNYG00000024270)	zgc:112982 (ENSPNYG00000024269) ##22	ENSPNYG00000024268	ENSPNYG00000024267	ENSPNYG00000024266	chrnd (ENSPNYG00000024265)	ENSPNYG00000024264
Haplochromini_B	ANCESTRAL SPECIES	90	ENSGT01050000244843.c.a.a.a.a.a	ENSGT00940000155015.g.a	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293.c	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT01070000253760.b.a.a.a.a.b.b.k.b.a.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.n.a.b.b.a	ENSGT00950000183169.A.b.e.a.a.a.b.b	ENSGT01030000234576.D.a.b.a.b.a.a.a.a.a.e.b.b.b.a
Eastern happy	MODERN SPECIES	21	ENSACLG00000014706	ENSACLG00000014729	ENSACLG00000014780	ENSACLG00000014787	ENSACLG00000014820	eif2s3 (ENSACLG00000014869)	klhl15 (ENSACLG00000014951)	apoob (ENSACLG00000015002)	sat1b (ENSACLG00000015045)	acot9.2 (ENSACLG00000015069)	pdha1b (ENSACLG00000015121)	rps6ka3b (ENSACLG00000015200)	ENSACLG00000015383	eif1axb (ENSACLG00000015402)	rps6ka3b (ENSACLG00000015458)	ENSACLG00000015521 ##22	ENSACLG00000015542	si:ch73-264p11.1 (ENSACLG00000015564)	cip2a (ENSACLG00000015575)	chrnd (ENSACLG00000015676)	ENSACLG00000015735	ENSACLG00000015763	ENSACLG00000015781	ENSACLG00000015798	ENSACLG00000015810	ENSACLG00000015816	ENSACLG00000015843	ENSACLG00000015865	ENSACLG00000015905	ENSACLG00000015932	ENSACLG00000015950
Zebra mbuna	MODERN SPECIES	1112	ENSMZEG00005020748	ENSMZEG00005020745	ENSMZEG00005020736	ENSMZEG00005020731	ENSMZEG00005020725	eif2s3 (ENSMZEG00005020717)	klhl15 (ENSMZEG00005020694)	apoob (ENSMZEG00005020685)	sat1b (ENSMZEG00005020683)	acot9.2 (ENSMZEG00005020672)	pdha1b (ENSMZEG00005020652)	rps6ka3b (ENSMZEG00005020643)	ENSMZEG00005020627	eif1axb (ENSMZEG00005020621)	MAP7D2 (ENSMZEG00005020617) ##21	ENSMZEG00005020613 ##22	ENSMZEG00005020610	si:ch73-264p11.1 (ENSMZEG00005020606)	cip2a (ENSMZEG00005020597)	chrnd (ENSMZEG00005020586)	ENSMZEG00005020578	ENSMZEG00005020574	ENSMZEG00005020571	ENSMZEG00005020568	ENSMZEG00005020562	ENSMZEG00005020561	ENSMZEG00005020556	ENSMZEG00005020553	ENSMZEG00005020549	ENSMZEG00005020547	ENSMZEG00005020544
Nile tilapia	MODERN SPECIES	21	ENSONIG00000042484	ENSONIG00000031655	ENSONIG00000008255	ENSONIG00000008253	ENSONIG00000008245	ENSONIG00000008244	eif2s3 (ENSONIG00000008238)	klhl15 (ENSONIG00000008235)	apoob (ENSONIG00000008234)	sat1b (ENSONIG00000008231)	acot9.2 (ENSONIG00000008224)	pdha1b (ENSONIG00000008220)	rps6ka3b (ENSONIG00000008212)	ENSONIG00000008211	eif1axb (ENSONIG00000008209)	ENSONIG00000039125 ##22	ENSONIG00000008205	ENSONIG00000035557	zgc:112408 (ENSONIG00000008203)	ENSONIG00000041543	ENSONIG00000041226	cip2a (ENSONIG00000008200)	chrnd (ENSONIG00000008195)	ENSONIG00000008274	ENSONIG00000031140	ENSONIG00000042402	ENSONIG00000028402	ENSONIG00000028812	ENSONIG00000028578	ENSONIG00000031285	ENSONIG00000029073
Midas cichlid	MODERN SPECIES	243	ENSACIG00000009868	ENSACIG00000009862	ENSACIG00000009810	ENSACIG00000009682	ENSACIG00000009663	ENSACIG00000009634	eif2s3 (ENSACIG00000009600)	klhl15 (ENSACIG00000009569)	apoob (ENSACIG00000009540)	sat1b (ENSACIG00000009518)	acot9.2 (ENSACIG00000009312)	pdha1b (ENSACIG00000009242)	rps6ka3b (ENSACIG00000009187)	ENSACIG00000009172	eif1axa (ENSACIG00000009147)	zgc:112982 (ENSACIG00000009107) ##22	ENSACIG00000009042	zgc:112408 (ENSACIG00000008945)	si:ch73-264p11.1 (ENSACIG00000008933)	cip2a (ENSACIG00000008726)	ENSACIG00000008703	ENSACIG00000008692	ENSACIG00000008679
Atherinomorphae	ANCESTRAL SPECIES	132															ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22
Cyprinodontiformes	ANCESTRAL SPECIES	36							ENSGT01030000234893.b	ENSGT00940000163670.b.a.q.a.a	ENSGT00940000159794	ENSGT00940000153251.a	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT01030000234614.B.a.b	ENSGT00940000166938	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00940000159116	ENSGT00550000074801	ENSGT00730000111293	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f	ENSGT00940000163015	ENSGT00390000003738.b.d.a
Aplocheiloidei	ANCESTRAL SPECIES	232											ENSGT00940000159794	ENSGT00940000153251.a	ENSGT00940000156202.b	ENSGT00940000166938	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330
Mangrove rivulus	MODERN SPECIES	638												chrnd (ENSKMAG00000011682)	cip2a (ENSKMAG00000011721)	si:ch73-264p11.1 (ENSKMAG00000011823)	ENSKMAG00000011831	ENSKMAG00000011858 ##22	eif1axa (ENSKMAG00000011900)	rps6ka3b (ENSKMAG00000011964)
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015023363	rpl22l1 (ENSNFUG00015023357)	ENSNFUG00015023353	ENSNFUG00015023094	PLD1 (ENSNFUG00015022401)	ENSNFUG00015022386	ENSNFUG00015022383	ENSNFUG00015022379	EIF2S3 (ENSNFUG00015022366)	KLHL15 (ENSNFUG00015022361)	APOO (ENSNFUG00015022353)	SATL1 (ENSNFUG00015022339)	ENSNFUG00015022335	ENSNFUG00015022327	ENSNFUG00015022320 ##21	ENSNFUG00015022301 ##22	ACOT9 (ENSNFUG00015022286)	pdha1b (ENSNFUG00015022255)	EIF1AXB (ENSNFUG00015022210)	rps6ka3b (ENSNFUG00015021708)	ENSNFUG00015021682	ENSNFUG00015021671	ENSNFUG00015021667	ENSNFUG00015021665	ENSNFUG00015020152	vipr2 (ENSNFUG00015020031)	ENSNFUG00015020026	ENSNFUG00015020021	Nfu_g_1_011390 (ENSNFUG00015020016)	MSL2 (ENSNFUG00015020008)	ENSNFUG00015020003
Cyprinodontoidei	ANCESTRAL SPECIES	48							ENSGT01030000234893.b.a.a	ENSGT00940000163670.b.a.q.a.a	ENSGT00940000159794	ENSGT00940000153251.a	ENSGT00940000171984	ENSGT00940000156202.b	ENSGT01030000234614.B.a.b	ENSGT00940000166938	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00940000159116	ENSGT00550000074801	ENSGT00730000111293	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f	ENSGT00940000163015	ENSGT00390000003738.b.d.a
Poeciliinae	ANCESTRAL SPECIES	33	ENSGT01100000263541.a.b.l.a.d	ENSGT01100000263483.A.g.a.d	ENSGT00730000111912.A.a	ENSGT01030000234893.b.b	ENSGT00940000158239.a.b	ENSGT01050000244843.c.a.a.a.b.b.a.a.b.a	ENSGT00940000154641.C.b.h.g.a	ENSGT00940000159794	ENSGT00940000155244.c.c.b.b	ENSGT00940000155244.c.c.b.a	ENSGT00940000153251.a	ENSGT00940000171984.f	ENSGT00940000156202.b	ENSGT01030000234614.B.a.b	ENSGT00940000166938	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00940000159116	ENSGT00550000074801	ENSGT00730000111293	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f	ENSGT00940000163015	ENSGT00390000003738.b.d.a
Poecilia	ANCESTRAL SPECIES	70					ENSGT01050000244843.c.a.a.a.b.b.a.a.b.a	ENSGT00940000154641.C.b.h.g.a	ENSGT01030000234893.b.b	ENSGT00940000158239.a.b	ENSGT00940000159794	ENSGT00940000155244.c.c.b.b	ENSGT00940000155244.c.c.b.a	ENSGT00940000153251.a	ENSGT00940000171984.f	ENSGT01030000234614.B.a.b	ENSGT00940000166938	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00940000159116	ENSGT00550000074801	ENSGT00730000111293	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000155015.g.a	ENSGT00940000163015	ENSGT00390000003738.b.d.a	ENSGT00940000154509
NAME_6	ANCESTRAL SPECIES	372									ENSGT00940000159794	ENSGT00940000155244.c.c.b.a.d	ENSGT00940000153251.a	ENSGT00940000171984.f	ENSGT01030000234614.B.a.b	ENSGT00940000166938	ENSGT00940000158416.q.b.g	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f
Amazon molly	MODERN SPECIES	864							ENSPFOG00000003282	chrnd (ENSPFOG00000003279)	ENSPFOG00000003264	cip2a (ENSPFOG00000002995)	ENSPFOG00000002952	ENSPFOG00000002914	ENSPFOG00000002598	ENSPFOG00000002524	GPRC6A (ENSPFOG00000002376)	ENSPFOG00000002366 ##22	eif1axb (ENSPFOG00000002363)	rps6ka3b (ENSPFOG00000001620)	ENSPFOG00000021696
Sailfin molly	MODERN SPECIES	2175															GPRC6A (ENSPLAG00000011736)	ENSPLAG00000011747 ##22	eif1axb (ENSPLAG00000011773)	rps6ka3b (ENSPLAG00000011877)
Guppy	MODERN SPECIES	451		ENSPREG00000011684	ENSPREG00000011671	ENSPREG00000011658	FZD7 (ENSPREG00000011636)	ENSPREG00000011625	ENSPREG00000011607	ENSPREG00000011594	ENSPREG00000011584	chrnd (ENSPREG00000011542)	ENSPREG00000011514	cip2a (ENSPREG00000011485)	ENSPREG00000011470	ENSPREG00000011459	ENSPREG00000011428	ENSPREG00000011406 ##22	eif1axa (ENSPREG00000011381)	rps6ka3b (ENSPREG00000011354)	ENSPREG00000011343	pdha1b (ENSPREG00000011312)	acot9.2 (ENSPREG00000011268)	sat1b (ENSPREG00000011242)	apoob (ENSPREG00000011228)	klhl15 (ENSPREG00000011196)	eif2s3 (ENSPREG00000011148)	ENSPREG00000011127	ENSPREG00000011102	ENSPREG00000011082	ENSPREG00000011035	ENSPREG00000010976	ENSPREG00000010957
Platyfish	MODERN SPECIES	13	FZD7 (ENSXMAG00000019962)	ENSXMAG00000024798	chrnd (ENSXMAG00000025846)	cip2a (ENSXMAG00000022526)	ENSXMAG00000026005	ENSXMAG00000026733	ENSXMAG00000025195	ENSXMAG00000022125	ENSXMAG00000025603	chrnd (ENSXMAG00000022574)	ENSXMAG00000026348	cip2a (ENSXMAG00000022014)	si:ch73-264p11.1 (ENSXMAG00000010256)	ENSXMAG00000010252	ENSXMAG00000010235	ENSXMAG00000010229 ##22	eif1axb (ENSXMAG00000021594)	rps6ka3b (ENSXMAG00000023369)	ENSXMAG00000023950	ENSXMAG00000023723	ENSXMAG00000022340	ENSXMAG00000024066	pdha1b (ENSXMAG00000011748)	acot9.2 (ENSXMAG00000011796)	sat1b (ENSXMAG00000011825)	apoob (ENSXMAG00000011828)	klhl15 (ENSXMAG00000023286)	eif2s3 (ENSXMAG00000011878)	ENSXMAG00000011895	ENSXMAG00000025874	ENSXMAG00000027353
NAME_4	ANCESTRAL SPECIES	181															ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00390000008256	ENSGT00940000159370.f	ENSGT00530000063174.a.k	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b.w	ENSGT00530000063666.b.eb	ENSGT00940000159116	ENSGT00550000074801.d	ENSGT00730000111293	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000155015.g.a	ENSGT00950000183196.B.f	ENSGT00390000003738.b.d.a	ENSGT00940000154509
Sheepshead minnow	MODERN SPECIES	153															ENSCVAG00000016468 ##21	ENSCVAG00000016438 ##22	eif1axa (ENSCVAG00000016422)	rps6ka3b (ENSCVAG00000016379)	pdha1b (ENSCVAG00000016266)	acot9.2 (ENSCVAG00000016180)	sat1b (ENSCVAG00000016096)	apoob (ENSCVAG00000016067)	klhl15 (ENSCVAG00000016060)	eif2s3 (ENSCVAG00000016029)	ENSCVAG00000015983	ENSCVAG00000015934	ENSCVAG00000015869	PLD1 (ENSCVAG00000015855)	TNIK (ENSCVAG00000015809)	ENSCVAG00000015500	rpl22l1 (ENSCVAG00000015479)
Mummichog	MODERN SPECIES	424																ENSFHEG00000006117 ##22	eif1axb (ENSFHEG00000006145)	ENSFHEG00000006180	rps6ka3b (ENSFHEG00000006236)	pdha1b (ENSFHEG00000006301)	acot9.2 (ENSFHEG00000006439)	sat1b (ENSFHEG00000006333)	apoob (ENSFHEG00000006467)	klhl15 (ENSFHEG00000006527)	eif2s3 (ENSFHEG00000006575)	ENSFHEG00000000176	ENSFHEG00000006585	ENSFHEG00000006624	PLD1 (ENSFHEG00000006649)	TNIK (ENSFHEG00000006806)	ENSFHEG00000006842
Oryzias	ANCESTRAL SPECIES	18	ENSGT00950000183196.B.f	ENSGT00390000003738.b.d.a	ENSGT00940000154509	ENSGT00940000155893.a	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a	ENSGT00940000177048	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000153251.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00400000022103.a	ENSGT00940000156576.i	ENSGT00950000183163.b ##22	ENSGT00940000156304.d	ENSGT00940000154992.a.b.c.a	ENSGT00950000183269	ENSGT00940000166938	ENSGT00940000159947	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000157533	ENSGT01050000244939.a.a.a.d	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00940000156770	ENSGT00940000169201
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00950000183196.B.f	ENSGT00390000003738.b.d.a	ENSGT00940000154509	ENSGT00940000155893.a	ENSGT00890000139496.b	ENSGT00940000162952.d.b.a	ENSGT00940000177048	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000153251.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00400000022103.a	ENSGT00940000156576.i	ENSGT00950000183163.b ##22	ENSGT00940000156304.d	ENSGT00940000159947	ENSGT00940000157008	ENSGT00390000009127	ENSGT00940000157533	ENSGT01050000244939.a.a.a.d	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00940000156770	ENSGT00940000169201	ENSGT00390000006452.a	ENSGT00940000159115	ENSGT00390000018596.A.b
Indian medaka	MODERN SPECIES	791											ENSOMEG00000005902	ENSOMEG00000005940	ENSOMEG00000005962	ssr1 (ENSOMEG00000005985)	ENSOMEG00000006011	ENSOMEG00000006057 ##22	ENSOMEG00000000142	ENSOMEG00000006191	ENSOMEG00000006197
Javanese ricefish	MODERN SPECIES	12	cldn11b (ENSOJAG00000015394)	ENSOJAG00000015373	ENSOJAG00000015366	cul1a (ENSOJAG00000015314)	ezh2 (ENSOJAG00000015177)	cip2a (ENSOJAG00000015085)	ENSOJAG00000015062	ENSOJAG00000015050	ENSOJAG00000015040	ENSOJAG00000014942	ENSOJAG00000014886	ENSOJAG00000014853	ENSOJAG00000014849	ssr1 (ENSOJAG00000014786)	ENSOJAG00000014778	ENSOJAG00000014756 ##22	ASPH (ENSOJAG00000014513)	ENSOJAG00000014488	scn5lab (ENSOJAG00000013849)	ENSOJAG00000013811	ENSOJAG00000013791	ENSOJAG00000013783	ENSOJAG00000013771	ENSOJAG00000013612	CLVS1 (ENSOJAG00000013594)	riok3 (ENSOJAG00000012982)	RREB1 (ENSOJAG00000012855)	ENSOJAG00000012791	nrn1b (ENSOJAG00000012778)	fars2 (ENSOJAG00000012689)	LYRM4 (ENSOJAG00000012675)
Oryzias_a	ANCESTRAL SPECIES	82	ENSGT00950000183196.B.f	ENSGT00390000003738.b.d.a	ENSGT00940000154509	ENSGT00940000155893.a	ENSGT00890000139496.b	ENSGT00940000154964.z	ENSGT00940000177048	ENSGT00940000154774	ENSGT00940000155013	ENSGT00940000153251.a	ENSGT00940000156390	ENSGT00940000154533.a.a.b	ENSGT00940000154775.c.b	ENSGT00400000022103.a	ENSGT00940000156576.i	ENSGT00950000183163.b ##22	ENSGT00940000156304.d	ENSGT00940000154992.a.b.c.a	ENSGT00940000166938
Chinese medaka	MODERN SPECIES	112	ENSOSIG00000008914	ENSOSIG00000003455	ENSOSIG00000000501	ENSOSIG00000000478	rpl22l1 (ENSOSIG00000000459)	ENSOSIG00000000454	ENSOSIG00000000452	ENSOSIG00000000446	cul1a (ENSOSIG00000000441)	ezh2 (ENSOSIG00000000170)	cip2a (ENSOSIG00000000080)	ENSOSIG00000000067	ENSOSIG00000000056	ENSOSIG00000022457	ssr1 (ENSOSIG00000022453)	ENSOSIG00000022450 ##22	ENSOSIG00000022421	ENSOSIG00000022419
Japanese Medaka HdrR	MODERN SPECIES	12	TNIK (ENSORLG00000002885)	ENSORLG00000027121	rpl22l1 (ENSORLG00000002916)	ENSORLG00000002934	cldn11b (ENSORLG00000002943)	ENSORLG00000002951	ENSORLG00000024126	cul1a (ENSORLG00000003000)	ezh2 (ENSORLG00000003066)	cip2a (ENSORLG00000003114)	ENSORLG00000022207	ENSORLG00000003147	ENSORLG00000025916	ssr1 (ENSORLG00000003179)	ENSORLG00000024486	ENSORLG00000003192 ##22	ENSORLG00000003235	ENSORLG00000003273	ENSORLG00000022475	ENSORLG00000029673	LYRM4 (ENSORLG00000025221)	fars2 (ENSORLG00000003287)	nrn1b (ENSORLG00000025427)	ENSORLG00000024431	RREB1 (ENSORLG00000003316)	rmc1 (ENSORLG00000003346)	riok3 (ENSORLG00000003395)	CLVS1 (ENSORLG00000030096)	cyb5a (ENSORLG00000003443)	ENSORLG00000003449	dipk1c (ENSORLG00000023344)
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT01030000235646	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Carangaria	ANCESTRAL SPECIES	21	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT01030000235646	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00730000111293	ENSGT00940000156456	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01030000235460	ENSGT00940000179170	ENSGT00940000178471
Turbot	MODERN SPECIES	13	ENSSMAG00000008228	rpl22l1 (ENSSMAG00000008211)	ENSSMAG00000031145	TNIK (ENSSMAG00000008153)	PLD1 (ENSSMAG00000010266)	ENSSMAG00000010241	ENSSMAG00000010225	EIF2S3 (ENSSMAG00000010192)	KLHL15 (ENSSMAG00000010151)	apoob (ENSSMAG00000030113)	SAT1 (ENSSMAG00000010106)	acot9.2 (ENSSMAG00000010044)	ENSSMAG00000009979	ENSSMAG00000009879	eif1axb (ENSSMAG00000009834)	ENSSMAG00000009714 ##22	ENSSMAG00000009669	ENSSMAG00000009652	cip2a (ENSSMAG00000009573)	ENSSMAG00000009528	ENSSMAG00000012161	ENSSMAG00000012144	ENSSMAG00000029677	ENSSMAG00000012113	ENSSMAG00000027407	ENSSMAG00000011952	ENSSMAG00000011883	ENSSMAG00000011846	ENSSMAG00000028898	msl2b (ENSSMAG00000026064)	ENSSMAG00000011782
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT01030000235646	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00970000198434	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b
Barramundi perch	MODERN SPECIES	84	TNIK (ENSLCAG00010025747)	PLD1 (ENSLCAG00010026279)	ENSLCAG00010026523	ENSLCAG00010026524	ENSLCAG00010026527	ENSLCAG00010026530	eif2s3 (ENSLCAG00010026535)	klhl15 (ENSLCAG00010026543)	apoob (ENSLCAG00010026548)	sat1b (ENSLCAG00010026550)	acot9.2 (ENSLCAG00010026553)	pdha1b (ENSLCAG00010026561)	rps6ka3b (ENSLCAG00010026763)	eif1axb (ENSLCAG00010026993)	ENSLCAG00010026996	ENSLCAG00010026998 ##22	ENSLCAG00010027003	zgc:112408 (ENSLCAG00010027005)	ENSLCAG00010027007	cip2a (ENSLCAG00010027009)	chrnd (ENSLCAG00010027017)	ENSLCAG00010027028	ENSLCAG00010027032	ENSLCAG00010027034	ENSLCAG00010027035	ENSLCAG00010027036	ENSLCAG00010027037	ENSLCAG00010027039	ENSLCAG00010027044	ENSLCAG00010027046	ENSLCAG00010027050
Seriola	ANCESTRAL SPECIES	93	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a
Yellowtail amberjack	MODERN SPECIES	3269	ENSSLDG00000009425	TNIK (ENSSLDG00000009349)	PLD1 (ENSSLDG00000009257)	ENSSLDG00000009061	ENSSLDG00000009013	ENSSLDG00000008919	ENSSLDG00000008895	eif2s3 (ENSSLDG00000008861)	klhl15 (ENSSLDG00000008828)	apoob (ENSSLDG00000008807)	sat1b (ENSSLDG00000008762)	acot9.2 (ENSSLDG00000008700)	pdha1b (ENSSLDG00000008595)	rps6ka3b (ENSSLDG00000008512)	eif1axb (ENSSLDG00000008477)	ENSSLDG00000008459 ##22	ENSSLDG00000008434	ENSSLDG00000008415	cip2a (ENSSLDG00000008285)	ENSSLDG00000008244	ENSSLDG00000008239	ENSSLDG00000008228	ENSSLDG00000008212	ENSSLDG00000008099	ENSSLDG00000008058	ENSSLDG00000008008	ENSSLDG00000007984	ssr1 (ENSSLDG00000007929)	ENSSLDG00000007849	ENSSLDG00000007818	ENSSLDG00000007772
Greater amberjack	MODERN SPECIES	232	rpl22l1 (ENSSDUG00000003315)	ENSSDUG00000003339	TNIK (ENSSDUG00000003392)	PLD1 (ENSSDUG00000003806)	ENSSDUG00000003923	ENSSDUG00000003976	ENSSDUG00000003953	eif2s3 (ENSSDUG00000003993)	klhl15 (ENSSDUG00000004040)	apoob (ENSSDUG00000004092)	sat1b (ENSSDUG00000004109)	acot9.2 (ENSSDUG00000004138)	pdha1b (ENSSDUG00000004167)	rps6ka3b (ENSSDUG00000004281)	eif1axb (ENSSDUG00000004342)	ENSSDUG00000004371 ##22	ENSSDUG00000004408	si:ch73-264p11.1 (ENSSDUG00000004463)	cip2a (ENSSDUG00000004494)	ENSSDUG00000004514	ENSSDUG00000004529	ENSSDUG00000004545	ENSSDUG00000004552	ENSSDUG00000004565
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT01030000235646	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000162944	ENSGT00940000163670.b.a	ENSGT00940000163670.a	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01030000234839	ENSGT00940000179170	ENSGT00390000016814.a
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT01030000235646	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00940000162944	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01030000234839	ENSGT00940000179170	ENSGT00390000016814.a	ENSGT01070000253816.b.c
Climbing perch	MODERN SPECIES	11	ENSATEG00000021651	TNIK (ENSATEG00000021510)	PLD1 (ENSATEG00000021446)	ENSATEG00000029348	ENSATEG00000021401	ENSATEG00000021387	EIF2S3 (ENSATEG00000021353)	KLHL15 (ENSATEG00000021306)	apoob (ENSATEG00000021274)	SAT1 (ENSATEG00000027737)	acot9.2 (ENSATEG00000021219)	pdha1b (ENSATEG00000021171)	rps6ka3b (ENSATEG00000021130)	ENSATEG00000021109	ENSATEG00000029236	ENSATEG00000021059 ##22	ENSATEG00000021034	si:ch73-264p11.1 (ENSATEG00000027625)	cip2a (ENSATEG00000021007)	ENSATEG00000020988	ENSATEG00000020914	ENSATEG00000025347	ENSATEG00000020895	ENSATEG00000020949	ENSATEG00000020928	ENSATEG00000020859	ENSATEG00000020838	ENSATEG00000020809	ENSATEG00000020790	ENSATEG00000020694	ENSATEG00000020666
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000022874	TNIK (ENSBSLG00000022922)	PLD1 (ENSBSLG00000023303)	ENSBSLG00000023424	ENSBSLG00000023425	ENSBSLG00000023430	ENSBSLG00000023432	eif2s3 (ENSBSLG00000023435)	klhl15 (ENSBSLG00000023568)	apoob (ENSBSLG00000023588)	sat1b (ENSBSLG00000023650)	acot9.2 (ENSBSLG00000023878)	pdha1b (ENSBSLG00000023974)	rps6ka3b (ENSBSLG00000024096)	eif1axa (ENSBSLG00000000507)	ENSBSLG00000000545 ##22	si:ch73-264p11.1 (ENSBSLG00000000573)	cip2a (ENSBSLG00000000647)	chrnd (ENSBSLG00000000807)	ENSBSLG00000000902	ENSBSLG00000000905	ENSBSLG00000001196	ENSBSLG00000001229	ENSBSLG00000001273	ENSBSLG00000001327	vipr2 (ENSBSLG00000002174)	ENSBSLG00000002300	ENSBSLG00000002402	ENSBSLG00000002425	msl2b (ENSBSLG00000002440)	tnfsf10 (ENSBSLG00000002455)
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01020000230622	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	943																ENSLBEG00000013509 ##22	ENSLBEG00000013571	ENSLBEG00000013651	cip2a (ENSLBEG00000013684)	chrnd (ENSLBEG00000013766)	ENSLBEG00000013833
Ballan wrasse	MODERN SPECIES	2042																ENSLBEG00000017147 ##22
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT01030000234893	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839
Perciformes	ANCESTRAL SPECIES	21	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i
Perciformes_a	ANCESTRAL SPECIES	36	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00940000167146	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00390000006738.b
Pike perch	MODERN SPECIES	66	ENSSLUG00000025150	TNIK (ENSSLUG00000025231)	PLD1 (ENSSLUG00000025491)	ENSSLUG00000025496	ENSSLUG00000025500	ENSSLUG00000025504	ENSSLUG00000025512	eif2s3 (ENSSLUG00000025517)	klhl15 (ENSSLUG00000025521)	apoob (ENSSLUG00000025526)	SAT1 (ENSSLUG00000025529)	acot9.2 (ENSSLUG00000025539)	pdha1b (ENSSLUG00000025557)	rps6ka3b (ENSSLUG00000025805)	eif1axb (ENSSLUG00000025957)	ENSSLUG00000025958 ##22	ENSSLUG00000025962	si:ch73-264p11.1 (ENSSLUG00000025964)	cip2a (ENSSLUG00000025966)	chrnd (ENSSLUG00000025974)	ENSSLUG00000025980	ENSSLUG00000025982	ENSSLUG00000025984	ENSSLUG00000025988	ENSSLUG00000025992	ENSSLUG00000025993	ENSSLUG00000025994	ENSSLUG00000001456	ENSSLUG00000001943	ENSSLUG00000002735	ENSSLUG00000002741
Channel bull blenny	MODERN SPECIES	58							ENSCGOG00000009081	ENSCGOG00000009072	sat1b (ENSCGOG00000009063)	acot9.2 (ENSCGOG00000008848)	ENSCGOG00000008722	rps6ka3b (ENSCGOG00000007214)	eif1axb (ENSCGOG00000006934)	ENSCGOG00000006932	ENSCGOG00000006918	ENSCGOG00000006889 ##22	ENSCGOG00000006881	ENSCGOG00000006880	cip2a (ENSCGOG00000006875)
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT01000000215671	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839	ENSGT00390000016814.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT01030000234614.B.a.b	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a	ENSGT00990000204208	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01100000263894	ENSGT01030000234839	ENSGT00390000016814.a	ENSGT01070000253816.b.c
European seabass	MODERN SPECIES	27	ENSDLAG00005011026	TNIK (ENSDLAG00005010108)	PLD1 (ENSDLAG00005007504)	ENSDLAG00005030583	ENSDLAG00005007369	ENSDLAG00005028096	EIF2S3 (ENSDLAG00005007326)	KLHL15 (ENSDLAG00005007280)	SAT1 (ENSDLAG00005032687)	apoob (ENSDLAG00005034422)	ENSDLAG00005006633	pdha1b (ENSDLAG00005005291)	rps6ka3b (ENSDLAG00005002745)	EIF1AX (ENSDLAG00005002070)	MAP7D2 (ENSDLAG00005033599) ##21	ENSDLAG00005018441 ##22	ENSDLAG00005002036	ENSDLAG00005002029	ENSDLAG00005002032	ENSDLAG00005029940	ENSDLAG00005001957	ENSDLAG00005001891	ENSDLAG00005031056	ENSDLAG00005003733	ENSDLAG00005003517	ENSDLAG00005021572	ENSDLAG00005003728	ENSDLAG00005033455	ENSDLAG00005017499	ENSDLAG00005013829	ENSDLAG00005034864
Large yellow croaker	MODERN SPECIES	494	riok3 (ENSLCRG00005008668)	rmc1 (ENSLCRG00005010094)	ENSLCRG00005011930	ENSLCRG00005011942	ENSLCRG00005011950	ENSLCRG00005011957	eif2s3 (ENSLCRG00005011960)	klhl15 (ENSLCRG00005011997)	apoob (ENSLCRG00005011999)	sat1b (ENSLCRG00005012000)	acot9.2 (ENSLCRG00005012001)	pdha1b (ENSLCRG00005012031)	rps6ka3b (ENSLCRG00005012483)	eif1axb (ENSLCRG00005014231)	ENSLCRG00005014232	ENSLCRG00005014233 ##22	ENSLCRG00005014234	zgc:112408 (ENSLCRG00005014238)	si:ch73-264p11.1 (ENSLCRG00005014239)	cip2a (ENSLCRG00005014244)	chrnd (ENSLCRG00005014431)	ENSLCRG00005015138	ENSLCRG00005015140	ENSLCRG00005015144	ENSLCRG00005015145	ENSLCRG00005015146	ENSLCRG00005015284	vipr2 (ENSLCRG00005022390)	ENSLCRG00005022393	EPC1 (ENSLCRG00005022402)	ENSLCRG00005022479
Gilthead seabream	MODERN SPECIES	10	rpl22l1 (ENSSAUG00010019828)	ENSSAUG00010019827	ENSSAUG00010019826	ENSSAUG00010019824	ENSSAUG00010019822	eif2s3 (ENSSAUG00010019821)	klhl15 (ENSSAUG00010019818)	apoob (ENSSAUG00010019817)	SAT1 (ENSSAUG00010019816)	acot9.2 (ENSSAUG00010019801)	pdha1b (ENSSAUG00010018922)	rps6ka3b (ENSSAUG00010018399)	eif1axa (ENSSAUG00010018382)	ENSSAUG00010018376 ##21	ENSSAUG00010018347	ENSSAUG00010018338 ##22	ENSSAUG00010018333	ENSSAUG00010018332	zgc:112408 (ENSSAUG00010018326)	ENSSAUG00010018320	ENSSAUG00010018319	cip2a (ENSSAUG00010018314)	ENSSAUG00010018308	ENSSAUG00010018304	ENSSAUG00010018302	chrnd (ENSSAUG00010017696)	ENSSAUG00010017692	ENSSAUG00010017691	ENSSAUG00010017689	ENSSAUG00010017688	ENSSAUG00010017687
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00940000155893.a	ENSGT00940000154509	ENSGT00390000003738.b.d.a	ENSGT00950000183196.B.f	ENSGT00940000155015.g.a	ENSGT00940000172693	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.f	ENSGT00390000008256	ENSGT00950000183163.b ##22	ENSGT00940000171984	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000159906.f	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01030000234839	ENSGT00940000178471	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i	ENSGT00390000006738.b	ENSGT00940000166207	ENSGT00530000064112.b.a.a	ENSGT00390000001455
Fugu	MODERN SPECIES	1	ENSTRUG00000002825	rpl22l1 (ENSTRUG00000003154)	ENSTRUG00000028500	TNIK (ENSTRUG00000003746)	PLD1 (ENSTRUG00000005513)	ENSTRUG00000024494	ENSTRUG00000006284	eif2s3 (ENSTRUG00000002867)	klhl15 (ENSTRUG00000003735)	apoob (ENSTRUG00000020497)	sat1 (ENSTRUG00000004500)	acot9.2 (ENSTRUG00000025401)	pdha1b (ENSTRUG00000004842)	rps6ka3b (ENSTRUG00000005953)	eif1axb (ENSTRUG00000007017)	zgc:112982 (ENSTRUG00000030957) ##22	ENSTRUG00000021004	cip2a (ENSTRUG00000007460)	chrnd (ENSTRUG00000007767)	ENSTRUG00000026541	ENSTRUG00000026253	ENSTRUG00000029428	ENSTRUG00000030554	ENSTRUG00000021344	ENSTRUG00000029422	ENSTRUG00000031426	ENSTRUG00000022953	ENSTRUG00000025737	ENSTRUG00000017676	ENSTRUG00000017694	vipr2 (ENSTRUG00000017701)
Pinecone sodierfish	MODERN SPECIES	12	rpl22l1 (ENSMMDG00005021313)	ENSMMDG00005021310	ENSMMDG00005021256	ENSMMDG00005020772	ENSMMDG00005020737	ENSMMDG00005020734	ENSMMDG00005020729	eif2s3 (ENSMMDG00005020684)	klhl15 (ENSMMDG00005020671)	apoob (ENSMMDG00005020668)	sat1b (ENSMMDG00005020664)	acot9.2 (ENSMMDG00005020007)	pdha1b (ENSMMDG00005019137)	rps6ka3b (ENSMMDG00005014542)	eif1axb (ENSMMDG00005014437)	zgc:112982 (ENSMMDG00005014429) ##22	ENSMMDG00005014380	zgc:112408 (ENSMMDG00005014371)	ENSMMDG00005014364	cip2a (ENSMMDG00005014067)	chrnd (ENSMMDG00005014054)	ENSMMDG00005014050	ENSMMDG00005014048	ENSMMDG00005014046	ENSMMDG00005014043	ENSMMDG00005014031	vipr2 (ENSMMDG00005013952)	ENSMMDG00005013947	ENSMMDG00005013926	ENSMMDG00005013925	ENSMMDG00005013921
Protacanthopterygii	ANCESTRAL SPECIES	70	ENSGT00940000161266	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801	ENSGT00940000159116	ENSGT00530000063666.b.eb	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00530000063174.a.k	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b	ENSGT01030000235646	ENSGT00940000159370.e.a	ENSGT00390000008256.wd	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b ##22	ENSGT00940000166938	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb	ENSGT00940000163670.a	ENSGT00940000159906.f	ENSGT00940000157755.r	ENSGT00950000182997.b	ENSGT00940000158089.b	ENSGT01090000260281	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a	ENSGT01070000253816.b.c	ENSGT00940000156699.i
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1010													ENSGT00530000063174.a.k.c.a.a	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b.b	ENSGT00950000183163.b.m ##22	ENSGT00940000166938.c	ENSGT00940000155920.k.a
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00940000159828.b.a	ENSGT00500000045505.b.h	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b.b	ENSGT01030000235646.a	ENSGT00390000008256.wd.a.a	ENSGT00950000183163.b.m ##22	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000161266.b	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b.b	ENSGT00530000063174.a.k.c.a.a	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b.m ##22	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.g.a	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b
River trout	MODERN SPECIES	11	otos (ENSSTUG00000016077)	ENSSTUG00000016084	ENSSTUG00000016103	ENSSTUG00000016112	ENSSTUG00000016124	ENSSTUG00000016133	ENSSTUG00000026294	eif2s3 (ENSSTUG00000026335)	klhl15 (ENSSTUG00000026390)	apoob (ENSSTUG00000026467)	sat1b (ENSSTUG00000026547)	ACOT9 (ENSSTUG00000026585)	pdha1b (ENSSTUG00000026879)	RPS6KA3 (ENSSTUG00000026945)	EIF1AX (ENSSTUG00000027208)	ENSSTUG00000027276 ##22	ENSSTUG00000027322	ENSSTUG00000027390	chrnd (ENSSTUG00000027414)	ENSSTUG00000028359	ENSSTUG00000028368	ENSSTUG00000028392	vipr2 (ENSSTUG00000028447)	ENSSTUG00000028456	ENSSTUG00000028471	msl2b (ENSSTUG00000028480)	tnfsf10 (ENSSTUG00000028520)	nceh1b.1 (ENSSTUG00000028533)	PLD1 (ENSSTUG00000028837)	TNIK (ENSSTUG00000034281)	ENSSTUG00000043419
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000080284	ENSSSAG00000080282	ENSSSAG00000080279	if2g (ENSSSAG00000080260)	ENSSSAG00000084918	KLHL15 (ENSSSAG00000080245)	ENSSSAG00000080233	SAT1 (ENSSSAG00000080231)	ACOT9 (ENSSSAG00000078036)	ENSSSAG00000076899	RPS6KA3 (ENSSSAG00000078964)	ENSSSAG00000098060	EIF1AX (ENSSSAG00000078822)	ENSSSAG00000082016	MAP7D2 (ENSSSAG00000118996) ##21	ENSSSAG00000078800 ##22	ENSSSAG00000078773	ENSSSAG00000109282	ENSSSAG00000078490	ENSSSAG00000082411	ENSSSAG00000078463	ENSSSAG00000107371	ENSSSAG00000108490	ENSSSAG00000077589	ENSSSAG00000077515	ENSSSAG00000077511	ENSSSAG00000111879	msl2 (ENSSSAG00000077499)	ENSSSAG00000077493	if3ei (ENSSSAG00000077463)	ENSSSAG00000077451
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d	ENSGT00940000159370.e.b	ENSGT00390000008256.wd.a.a	ENSGT00950000183163.b.m ##22	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b
Rainbow trout	MODERN SPECIES	2	otos (ENSOMYG00000064635)	ENSOMYG00000040343	ENSOMYG00000040369	ENSOMYG00000040380	ENSOMYG00000040401	ENSOMYG00000040430	KLHL15 (ENSOMYG00000040457)	apoob (ENSOMYG00000040468)	SAT1 (ENSOMYG00000040494)	ACOT9 (ENSOMYG00000040549)	ENSOMYG00000040609	RPS6KA3 (ENSOMYG00000069271)	ENSOMYG00000064201	ENSOMYG00000003253	ENSOMYG00000065908	ENSOMYG00000003440 ##22	ENSOMYG00000003551	ENSOMYG00000065848	ENSOMYG00000003625	ENSOMYG00000003147	ENSOMYG00000003772	ENSOMYG00000003822	ENSOMYG00000064129	ENSOMYG00000003921	ENSOMYG00000053682	ENSOMYG00000004003	ENSOMYG00000004019	msl2b (ENSOMYG00000004048)	tnfsf10 (ENSOMYG00000004080)	nceh1b.1 (ENSOMYG00000004118)	PLD1 (ENSOMYG00000054769)
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00390000000076.z.a	ENSGT00390000011600.g	ENSGT00990000210368	ENSGT00940000175687.b	ENSGT00940000162716	ENSGT00940000156456	ENSGT00730000111293	ENSGT00550000074801.f	ENSGT00940000159116.d	ENSGT00530000063666.b.eb.d	ENSGT00950000183121.b.b.b.b.w.f	ENSGT00390000005330.h	ENSGT00530000063174.a.k.d	ENSGT00940000159370.e.b	ENSGT00390000008256.vd.b.b	ENSGT00950000183163.b.m ##22	ENSGT00940000166938.c	ENSGT00940000155920.k.a	ENSGT00940000159794	ENSGT00940000163670.b.a.gb.b.b	ENSGT00940000159906.f.h	ENSGT00940000157755.r.f	ENSGT00950000182997.b.l.a	ENSGT00940000158089.b.e	ENSGT01090000260281.a	ENSGT00990000206793.a.b.b	ENSGT00390000016814.a.c	ENSGT01070000253816.b.c.a	ENSGT00940000156699.i	ENSGT00940000155015.g.a	ENSGT00950000183196.B.e.e.b
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	7	GABRR3 (ENSOTSG00005019078)	ENSOTSG00005019079	ENSOTSG00005019130	vipr2 (ENSOTSG00005024886)	ENSOTSG00005024887	ENSOTSG00005024888	msl2b (ENSOTSG00005024890)	tnfsf10 (ENSOTSG00005024891)	NCEH1 (ENSOTSG00005024892)	ENSOTSG00005024902	ENSOTSG00005033707	ENSOTSG00005036354	rpl22l1 (ENSOTSG00005036355)	cldn11b (ENSOTSG00005036356)	ENSOTSG00005036371	ENSOTSG00005036372 ##22	ENSOTSG00005036373	ENSOTSG00005036374	chrnd (ENSOTSG00005036375)	ENSOTSG00005036376	ENSOTSG00005036377	ENSOTSG00005036378	ENSOTSG00005036398	vipr2 (ENSOTSG00005038407)	ENSOTSG00005038410	ENSOTSG00005038412	msl2b (ENSOTSG00005038413)	NCEH1 (ENSOTSG00005038416)	ENSOTSG00005038435	ENSOTSG00005043256	ENSOTSG00005043620
Chinook salmon	MODERN SPECIES	7	adipoqa (ENSOTSG00005016197)	and1 (ENSOTSG00005016217)	cops9 (ENSOTSG00005016218)	otos (ENSOTSG00005016219)	ENSOTSG00005016220	ENSOTSG00005016222	ENSOTSG00005016225	eif2s3 (ENSOTSG00005016226)	klhl15 (ENSOTSG00005016232)	apoob (ENSOTSG00005016238)	sat1b (ENSOTSG00005016249)	ACOT9 (ENSOTSG00005016271)	pdha1b (ENSOTSG00005016793)	RPS6KA3 (ENSOTSG00005019066)	ENSOTSG00005019067	ENSOTSG00005019068 ##22	ENSOTSG00005019072	ENSOTSG00005019074	chrnd (ENSOTSG00005019075)	ENSOTSG00005019077	GABRR3 (ENSOTSG00005019078)	ENSOTSG00005019079	ENSOTSG00005019130	vipr2 (ENSOTSG00005024886)	ENSOTSG00005024887	ENSOTSG00005024888	msl2b (ENSOTSG00005024890)	tnfsf10 (ENSOTSG00005024891)	NCEH1 (ENSOTSG00005024892)	ENSOTSG00005024902	ENSOTSG00005033707
Coho salmon	MODERN SPECIES	9	and1 (ENSOKIG00005014746)	cops9 (ENSOKIG00005014741)	otos (ENSOKIG00005014736)	ENSOKIG00005014713	ENSOKIG00005014705	ENSOKIG00005050559	ENSOKIG00005050554	eif2s3 (ENSOKIG00005050547)	klhl15 (ENSOKIG00005050539)	apoob (ENSOKIG00005050531)	SAT1 (ENSOKIG00005050527)	ACOT9 (ENSOKIG00005050519)	pdha1b (ENSOKIG00005050506)	ENSOKIG00005050483	ENSOKIG00005050464	ENSOKIG00005050459 ##22	ENSOKIG00005050376	ENSOKIG00005050350	chrnd (ENSOKIG00005050327)	ENSOKIG00005050316	ENSOKIG00005050314	ENSOKIG00005050304	ENSOKIG00005050289	ENSOKIG00005050148	ENSOKIG00005050062	ENSOKIG00005050060	ENSOKIG00005050058	msl2b (ENSOKIG00005050054)	tnfsf10 (ENSOKIG00005050045)	nceh1b.1 (ENSOKIG00005050043)	ENSOKIG00005049489
Salmoninae	ANCESTRAL SPECIES	563										ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b.n ##22	ENSGT00940000166938.d	ENSGT00940000155920.k.b	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT01070000255370	ENSGT00940000163670.b.a.gb.a	ENSGT00940000163670.a	ENSGT00940000159906.f.g.a	ENSGT00940000157755.r.e	ENSGT00950000182997.b.l.b.b.b
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000175687.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.a	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b	ENSGT00950000182941.b.b.b.b ##21	ENSGT00950000183163.b.n ##22	ENSGT00940000166938.d	ENSGT00940000155920.k.b	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT01090000260281.b.a	ENSGT00990000206793.a.b.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a	ENSGT00390000003738.b.d.a.d	ENSGT00940000154509.ad.a	ENSGT00940000155893.a	ENSGT00940000162952.d.b.a.a	ENSGT00940000177048	ENSGT00970000193381.a.a.c.b.a.a.b.a.a.a
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00390000000076.z.b	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b	ENSGT00390000008256.vd.b.b	ENSGT01030000235646.a	ENSGT00950000183163.b.n ##22	ENSGT00940000166938.d	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT00950000182997.b.l.b.b.a	ENSGT00940000158089.b.f	ENSGT01090000260281.b.b.b	ENSGT00990000206793.a.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a	ENSGT00390000003738.b.d.a.d	ENSGT00940000154509.ad.a	ENSGT00940000155893.a	ENSGT00940000162952.d.b.a.a	ENSGT00940000177048
Rainbow trout	MODERN SPECIES	6	apodb (ENSOMYG00000010815)	ENSOMYG00000059936	ENSOMYG00000070606	ENSOMYG00000010797	ENSOMYG00000070468	ENSOMYG00000010773	KLHL15 (ENSOMYG00000010735)	ENSOMYG00000067769	APOO (ENSOMYG00000010708)	ACOT9 (ENSOMYG00000010388)	sat1 (ENSOMYG00000010129)	ENSOMYG00000009989	ENSOMYG00000077429	RPS6KA3 (ENSOMYG00000048494)	ENSOMYG00000009940	ENSOMYG00000009891 ##22	ENSOMYG00000009814	ENSOMYG00000061987	ENSOMYG00000009741	ENSOMYG00000059277	ENSOMYG00000009689	ENSOMYG00000075911	ENSOMYG00000009544	ENSOMYG00000063126	ENSOMYG00000003890	ENSOMYG00000061118	ENSOMYG00000009518	ENSOMYG00000054757	CK-2.1 (ENSOMYG00000037143)	ENSOMYG00000009458	ENSOMYG00000009446
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000160853.f	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT00390000000076.z.b	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT00390000005330.g	ENSGT00530000063174.a.k.c.b	ENSGT00940000159370.e.a	ENSGT00390000008256.wd.a.b	ENSGT00950000183163.b.n ##22	ENSGT00940000166938.d	ENSGT00940000153251.a	ENSGT00940000163670.b.a.hb	ENSGT00990000204208	ENSGT00940000157755.r.e	ENSGT00950000182997.b.l.b.b.a	ENSGT00940000158089.b.f	ENSGT01090000260281.b.b.b	ENSGT00990000206793.a.a	ENSGT00390000016814.a.d	ENSGT01070000253816.b.c.b	ENSGT00950000183196.B.e.e.a	ENSGT00390000003738.b.d.a.d	ENSGT00940000154509.ad.a	ENSGT00940000155893.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	328															ENSOTSG00005018177	ENSOTSG00005018181 ##22	ENSOTSG00005018182	ENSOTSG00005018185	ENSOTSG00005018186	ENSOTSG00005018187	ENSOTSG00005018188	rpl22l1 (ENSOTSG00005018189)	ENSOTSG00005018190	ENSOTSG00005018385	ENSOTSG00005026898	msl2b (ENSOTSG00005026900)	ENSOTSG00005026902	ENSOTSG00005026903	vipr2 (ENSOTSG00005026930)	ENSOTSG00005026960	ENSOTSG00005028170
Chinook salmon	MODERN SPECIES	328												ENSOTSG00005028191	ENSOTSG00005028188	ENSOTSG00005028185	ENSOTSG00005028183	ENSOTSG00005028180 ##22	ENSOTSG00005028178	ENSOTSG00005028177	chrnd (ENSOTSG00005028176)	ENSOTSG00005028174	ENSOTSG00005028173	ENSOTSG00005028170	ENSOTSG00005026960	vipr2 (ENSOTSG00005026930)	ENSOTSG00005026903	ENSOTSG00005026902	msl2b (ENSOTSG00005026900)	ENSOTSG00005026898	ENSOTSG00005018385	ENSOTSG00005018190	rpl22l1 (ENSOTSG00005018189)
Coho salmon	MODERN SPECIES	2	ENSOKIG00005010287	and1 (ENSOKIG00005010301)	cops9 (ENSOKIG00005010335)	apodb (ENSOKIG00005002065)	ENSOKIG00005002079	ENSOKIG00005002103	ENSOKIG00005002244	ENSOKIG00005002630	KLHL15 (ENSOKIG00005002642)	apoob (ENSOKIG00005002661)	SAT1 (ENSOKIG00005002682)	ACOT9 (ENSOKIG00005002720)	pdha1b (ENSOKIG00005002760)	ENSOKIG00005002940	ENSOKIG00005003103	ENSOKIG00005003130 ##22	ENSOKIG00005003148	cip2a (ENSOKIG00005003212)	ENSOKIG00005003381	ENSOKIG00005003405	ENSOKIG00005003437	ENSOKIG00005003441	ENSOKIG00005003454	ENSOKIG00005003522	ENSOKIG00005003688	ENSOKIG00005003705	ENSOKIG00005003708	ENSOKIG00005003710	MSL2 (ENSOKIG00005003718)	ENSOKIG00005003729	ENSOKIG00005003757
Salmo	ANCESTRAL SPECIES	34	ENSGT01100000263502.A.a.a.b.a.a	ENSGT00500000045505.b.g	ENSGT01090000260281.b.b.a	ENSGT00980000198875.g.a	ENSGT00390000011600.h	ENSGT00510000046981.b.a.d	ENSGT00940000175687.a	ENSGT00940000161266.a.b	ENSGT00550000074801.e	ENSGT00940000159116.c	ENSGT00530000063666.b.eb.c	ENSGT00950000183121.b.b.b.b.w.e.a	ENSGT00390000005330.g	ENSGT00950000183121.b.b.b.b.w.e.b	ENSGT01030000235646.a	ENSGT00950000183163.b.n ##22	ENSGT00940000166938.d	ENSGT00940000155920.k.b	ENSGT00940000153251.a	ENSGT01070000255370	ENSGT00940000163670.b.a.gb.a	ENSGT00940000163670.a
River trout	MODERN SPECIES	36	ENSSTUG00000039758	and1 (ENSSTUG00000039750)	ENSSTUG00000039742	ENSSTUG00000039734	otos (ENSSTUG00000039728)	apodb (ENSSTUG00000039682)	ENSSTUG00000039661	eif2s3 (ENSSTUG00000039599)	klhl15 (ENSSTUG00000039571)	apoob (ENSSTUG00000039550)	sat1b (ENSSTUG00000039524)	ACOT9 (ENSSTUG00000039413)	sat1b (ENSSTUG00000039386)	ENSSTUG00000039381	ENSSTUG00000039377	ENSSTUG00000039362 ##22	ENSSTUG00000039338	ENSSTUG00000039329	cip2a (ENSSTUG00000039291)	ENSSTUG00000039273	ENSSTUG00000039241	ENSSTUG00000039205	ENSSTUG00000039160	ENSSTUG00000038312	ENSSTUG00000038269	ENSSTUG00000038258	ENSSTUG00000038238	msl2b (ENSSTUG00000038202)	ENSSTUG00000038195	tnika (ENSSTUG00000030578)	ENSSTUG00000030438
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000080287	ENSSSAG00000077916	ENSSSAG00000106166	ENSSSAG00000077932	KLHL15 (ENSSSAG00000077983)	ENSSSAG00000099404	apoob (ENSSSAG00000097184)	ENSSSAG00000112612	SAT1 (ENSSSAG00000078009)	ACOT9 (ENSSSAG00000109432)	sat1b (ENSSSAG00000111429)	pdha1b (ENSSSAG00000080177)	RPS6KA3 (ENSSSAG00000077150)	ENSSSAG00000076877	ENSSSAG00000099356 ##21	ENSSSAG00000078061 ##22	ENSSSAG00000088995	ENSSSAG00000078074	ENSSSAG00000078092	kiaa1524 (ENSSSAG00000078099)	ENSSSAG00000078120	ENSSSAG00000121263	ENSSSAG00000116217	ENSSSAG00000118236	ENSSSAG00000078131	ENSSSAG00000062619	ENSSSAG00000078145	ENSSSAG00000078151	ENSSSAG00000078146	ENSSSAG00000102915	ENSSSAG00000105492
Huchen	MODERN SPECIES	1322											ENSHHUG00000006571	pdha1b (ENSHHUG00000006779)	ENSHHUG00000006827	ENSHHUG00000007832	ENSHHUG00000007936	ENSHHUG00000007942 ##22	ENSHHUG00000007965	cip2a (ENSHHUG00000008008)	ENSHHUG00000008025	pawr (ENSHHUG00000008029)	ENSHHUG00000008038
Northern pike	MODERN SPECIES	20	and1 (ENSELUG00000013102)	cops9 (ENSELUG00000013075)	otos (ENSELUG00000013059)	apodb (ENSELUG00000013046)	ENSELUG00000033979	ENSELUG00000012949	ENSELUG00000012983	eif2s3 (ENSELUG00000012926)	klhl15 (ENSELUG00000012872)	apoob (ENSELUG00000012820)	sat1b (ENSELUG00000012698)	acot9.2 (ENSELUG00000012671)	pdha1b (ENSELUG00000012632)	RPS6KA3 (ENSELUG00000012539)	EIF1AX (ENSELUG00000012432)	ENSELUG00000012313 ##22	ENSELUG00000012285	si:ch73-264p11.1 (ENSELUG00000026366)	cip2a (ENSELUG00000012252)	chrnd (ENSELUG00000012182)	ENSELUG00000034588	ENSELUG00000028231	ENSELUG00000012065	GABRR3 (ENSELUG00000012038)	ENSELUG00000028463	ENSELUG00000011899	vipr2 (ENSELUG00000011832)	ENSELUG00000011815	ENSELUG00000011799	msl2b (ENSELUG00000011787)	tnfsf10 (ENSELUG00000011752)
Osteoglossiformes	ANCESTRAL SPECIES	67	ENSGT00940000165845.c.a	ENSGT00390000011053	ENSGT00640000091497.a	ENSGT01050000244950.a.a.a	ENSGT00440000034309	ENSGT00940000164731.f	ENSGT00550000074801	ENSGT00940000159116	ENSGT00950000183121.b.b.b.b.w	ENSGT00390000005330	ENSGT00940000153430.a.a	ENSGT00530000063174.a.k	ENSGT00940000159370.b	ENSGT00390000008256	ENSGT00950000182941.b.b.b.a ##21	ENSGT00950000183163.b ##22	ENSGT00940000156709.a	ENSGT00940000162424	ENSGT00390000017542	ENSGT00510000048066	ENSGT00870000136506	ENSGT00940000157313	ENSGT00940000157080	ENSGT01030000234935	ENSGT00940000164851.a.g	ENSGT00940000159906	ENSGT00940000163670.a.f	ENSGT00940000156202.b	ENSGT00940000162182.c	ENSGT00940000156371.e.a	ENSGT00530000063529.A
Asian bonytongue	MODERN SPECIES	16	mix23 (ENSSFOG00015016820)	ENSSFOG00015016835	KPNA1 (ENSSFOG00015016843)	c8g (ENSSFOG00015016877)	ENSSFOG00015028584	eif2s3 (ENSSFOG00015016920)	klhl15 (ENSSFOG00015027608)	sat1b (ENSSFOG00015016956)	acot9.2 (ENSSFOG00015016982)	prdx4 (ENSSFOG00015017085)	pdha1b (ENSSFOG00015017120)	rps6ka3b (ENSSFOG00015017183)	ENSSFOG00015030262	ENSSFOG00015031597 ##21	ENSSFOG00015017260	ENSSFOG00015017263 ##22	CNKSR2 (ENSSFOG00015017278)	KLHL34 (ENSSFOG00015029024)	smpx (ENSSFOG00015017313)	mbtps2 (ENSSFOG00015017325)	sms (ENSSFOG00015017358)	phex (ENSSFOG00015017417)	PTCHD1 (ENSSFOG00015029116)	ENSSFOG00015017466	ENSSFOG00015012239	ENSSFOG00015017528	si:ch73-264p11.1 (ENSSFOG00015030690)	PLCXD2 (ENSSFOG00015017572)	PHLDB2 (ENSSFOG00015030639)	ENSSFOG00015017585	amer2 (ENSSFOG00015026576)
P. kingsleyae	MODERN SPECIES	412											acot9.2 (ENSPKIG00000011966)	prdx4 (ENSPKIG00000012090)	pdha1b (ENSPKIG00000012119)	rps6ka3b (ENSPKIG00000012175)	eif1axa (ENSPKIG00000012288)	ENSPKIG00000012358 ##22	CNKSR2 (ENSPKIG00000012427)	KLHL34 (ENSPKIG00000012518)	smpx (ENSPKIG00000012545)	mbtps2 (ENSPKIG00000012564)	sms (ENSPKIG00000012603)	phex (ENSPKIG00000012686)	USF3 (ENSPKIG00000012814)	naa50 (ENSPKIG00000012869)	ATP6V1A (ENSPKIG00000012921)	GRAMD1C (ENSPKIG00000012972)	zdhhc23b (ENSPKIG00000013009)	ccdc191 (ENSPKIG00000013036)	qtrt2 (ENSPKIG00000013085)	drd3 (ENSPKIG00000013157)	boc (ENSPKIG00000013202)
Reedfish	MODERN SPECIES	12	ENSECRG00000005985	apooa (ENSECRG00000005991)	sat1a.2 (ENSECRG00000005999)	acot9.2 (ENSECRG00000006020)	prdx4 (ENSECRG00000006048)	ENSECRG00000006057	phex (ENSECRG00000006068)	sms (ENSECRG00000006084)	mbtps2 (ENSECRG00000006093)	smpx (ENSECRG00000006111)	KLHL34 (ENSECRG00000006129)	CNKSR2 (ENSECRG00000006154)	rps6ka3a (ENSECRG00000006272)	eif1axa (ENSECRG00000006607)	MAP7D2 (ENSECRG00000006666) ##21	BCLAF3 (ENSECRG00000006913) ##22	SH3KBP1 (ENSECRG00000006955)	ENSECRG00000007088	MAP3K15 (ENSECRG00000007105)	pdha1b (ENSECRG00000007129)	ADGRG2 (ENSECRG00000007164)	gabrr3a (ENSECRG00000007203)	ENSECRG00000007247	CIP2A (ENSECRG00000007313)	ENSECRG00000007340	PLCXD2 (ENSECRG00000007358)	ENSECRG00000007373	PHLDB2 (ENSECRG00000007400)	tagln3b (ENSECRG00000007431)	ENSECRG00000007451	TAGLN3 (ENSECRG00000007472)
Cyclostomata	ANCESTRAL SPECIES	853																ENSGT00950000183163 #22	ENSGT00940000155886
Lamprey	MODERN SPECIES	1087																ENSPMAG00000009307 #22	ENSPMAG00000009306
Hagfish	MODERN SPECIES	46								ENSEBUG00000006077	ENSEBUG00000001652 #21	sft2d1 (ENSEBUG00000013631)	ENSEBUG00000016478	ENSEBUG00000004313	ENSEBUG00000001289	ENSEBUG00000010171	PTCHD1 (ENSEBUG00000003708)	ENSEBUG00000011917 #22	ENSEBUG00000013887	SLC35F1 (ENSEBUG00000006214)	ENSEBUG00000000380	ENSEBUG00000004319