Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000166505	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00900000143541	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975	ENSGT00940000161405	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000162644	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000007965
Sciuridae	ANCESTRAL SPECIES	26	ENSGT00940000157185	ENSGT00940000166505	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00900000143541	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000162644	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000007965
Marmotini	ANCESTRAL SPECIES	25	ENSGT01030000235172	ENSGT01100000265011	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00900000143541	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000162644	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000018085.a.b.b #37
Marmotini_b	ANCESTRAL SPECIES	46	ENSGT00390000004493	ENSGT00940000157185	ENSGT01100000265011	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000162644	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000018085.a.b.b #37
Squirrel	MODERN SPECIES	358														IGSF10 (ENSSTOG00000022500) #20	P2RY12 (ENSSTOG00000010530) #21	P2RY13 (ENSSTOG00000000740) #22	GPR87 (ENSSTOG00000007095) #23	P2RY14 (ENSSTOG00000000738) #24	GPR171 (ENSSTOG00000022505) #25	MED12L (ENSSTOG00000000730) #26	ENSSTOG00000007643 #27	CLRN1 (ENSSTOG00000007278) #28	SIAH2 (ENSSTOG00000025639) #29	ERICH6 (ENSSTOG00000003398) #30	SELENOT (ENSSTOG00000032679) #31	EIF2A (ENSSTOG00000003374) #32	TSC22D2 (ENSSTOG00000023372) #33	ENSSTOG00000033117 #34	PFN2 (ENSSTOG00000010909) #35	RNF13 (ENSSTOG00000010899) #36	ENSSTOG00000006993 #37
Arctic ground squirrel	MODERN SPECIES	378										MBNL1 (ENSUPAG00010013030)	SUCNR1 (ENSUPAG00010013024)	AADAC (ENSUPAG00010012909)	ENSUPAG00010012902	IGSF10 (ENSUPAG00010012888) #20	P2RY12 (ENSUPAG00010012883) #21	P2RY13 (ENSUPAG00010012881) #22	GPR87 (ENSUPAG00010012878) #23	P2RY14 (ENSUPAG00010012870) #24	GPR171 (ENSUPAG00010012865) #25	MED12L (ENSUPAG00010012669) #26	CLRN1 (ENSUPAG00010012648) #28	MINDY4B (ENSUPAG00010012633)	SIAH2 (ENSUPAG00010012632) #29	ENSUPAG00010012602 #30	SELENOT (ENSUPAG00010012596) #31	EIF2A (ENSUPAG00010012583) #32	SERP1 (ENSUPAG00010012577)	TSC22D2 (ENSUPAG00010012552) #33
Alpin marmot	MODERN SPECIES	19	ENSMMMG00000015745	ENSMMMG00000015738	MME (ENSMMMG00000015658)	GPR149 (ENSMMMG00000015632)	ENSMMMG00000015607	ARHGEF26 (ENSMMMG00000015536)	RAP2B (ENSMMMG00000015534)	P2RY1 (ENSMMMG00000015529)	ENSMMMG00000015517	MBNL1 (ENSMMMG00000015300)	SUCNR1 (ENSMMMG00000015288)	AADAC (ENSMMMG00000015181)	ENSMMMG00000015169	IGSF10 (ENSMMMG00000015152) #20	P2RY12 (ENSMMMG00000015147) #21	P2RY13 (ENSMMMG00000015142) #22	GPR87 (ENSMMMG00000015136) #23	P2RY14 (ENSMMMG00000015131) #24	GPR171 (ENSMMMG00000015128) #25	MED12L (ENSMMMG00000014947) #26	CLRN1 (ENSMMMG00000014937) #28	MINDY4B (ENSMMMG00000014922)	SIAH2 (ENSMMMG00000014915) #29	ERICH6 (ENSMMMG00000014903) #30	ENSMMMG00000014894 #31	EIF2A (ENSMMMG00000014880) #32	TSC22D2 (ENSMMMG00000014861) #33	PFN2 (ENSMMMG00000014847) #35	ENSMMMG00000014788 #36	ENSMMMG00000014779 #37	ANKUB1 (ENSMMMG00000014769)
Eurasian red squirrel	MODERN SPECIES	1	STRIT1 (ENSSVLG00005006829)	MME (ENSSVLG00005006865)	ENSSVLG00005006949	GPR149 (ENSSVLG00005006960)	DHX36 (ENSSVLG00005007041)	ARHGEF26 (ENSSVLG00005007133)	RAP2B (ENSSVLG00005007246)	P2RY1 (ENSSVLG00005007265)	ENSSVLG00005007281	MBNL1 (ENSSVLG00005007413)	SUCNR1 (ENSSVLG00005007593)	AADAC (ENSSVLG00005007632)	IGSF10 (ENSSVLG00005007686) #20	MED12L (ENSSVLG00005007792) #26	P2RY12 (ENSSVLG00005007889) #21	P2RY13 (ENSSVLG00005007907) #22	GPR87 (ENSSVLG00005007934) #23	P2RY14 (ENSSVLG00005007959) #24	GPR171 (ENSSVLG00005007976) #25	CLRN1 (ENSSVLG00005007985) #28	MINDY4B (ENSSVLG00005008022)	SIAH2 (ENSSVLG00005008095) #29	ERICH6 (ENSSVLG00005008123) #30	SELENOT (ENSSVLG00005008206) #31	EIF2A (ENSSVLG00005008324) #32	ENSSVLG00005008632	TSC22D2 (ENSSVLG00005008658) #33	PFN2 (ENSSVLG00005008708) #35	RNF13 (ENSSVLG00005008776) #36	ANKUB1 (ENSSVLG00005008841)	COMMD2 (ENSSVLG00005008925)
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000157185	ENSGT00940000166505	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975.u.a	ENSGT00940000161405	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000162644	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000007965
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000157185	ENSGT00940000166505	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975.u.a	ENSGT00940000161405	ENSGT00940000163586	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000007965	ENSGT00390000008489.f
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT00390000004493	ENSGT00940000157185	ENSGT00940000166505	ENSGT00940000156745	ENSGT00390000003715	ENSGT00940000156903	ENSGT01030000234571.a.a	ENSGT00940000160283	ENSGT01030000234621.B	ENSGT00950000182897.B.a.a	ENSGT01030000234621.A	ENSGT00940000155975.u.a	ENSGT00940000161405	ENSGT00940000158290 #20	ENSGT01060000248592.E #21	ENSGT01060000248592.B #22	ENSGT01060000248592.D #23	ENSGT01060000248592.C #24	ENSGT01060000248589.B #25	ENSGT00440000037505.a #26	ENSGT00850000132319.a.a.a #28	ENSGT00940000159812 #29	ENSGT00940000153655.A.b #30	ENSGT00390000011725.d #31	ENSGT00730000111053 #32	ENSGT00940000161729	ENSGT00940000160465 #33	ENSGT00940000153664.B #35	ENSGT00940000154942.h #36	ENSGT00390000007965	ENSGT00390000008489.f
Long-tailed chinchilla	MODERN SPECIES	155	PLCH1 (ENSCLAG00000002471)	ENSCLAG00000002045	MME (ENSCLAG00000001839)	GPR149 (ENSCLAG00000004034)	DHX36 (ENSCLAG00000003610)	ARHGEF26 (ENSCLAG00000003300)	RAP2B (ENSCLAG00000003050)	P2RY1 (ENSCLAG00000003012)	MBNL1 (ENSCLAG00000002450)	SUCNR1 (ENSCLAG00000002102)	ENSCLAG00000002033	ENSCLAG00000001891	AADACL2 (ENSCLAG00000001836)	IGSF10 (ENSCLAG00000001781) #20	P2RY12 (ENSCLAG00000002335) #21	P2RY13 (ENSCLAG00000002316) #22	GPR87 (ENSCLAG00000002176) #23	P2RY14 (ENSCLAG00000002035) #24	GPR171 (ENSCLAG00000002023) #25	MED12L (ENSCLAG00000005486) #26	CLRN1 (ENSCLAG00000003644) #28	ENSCLAG00000017545	SIAH2 (ENSCLAG00000002950) #29	ERICH6 (ENSCLAG00000002764) #30	SELENOT (ENSCLAG00000003019) #31	EIF2A (ENSCLAG00000002863) #32	SERP1 (ENSCLAG00000002795)	ENSCLAG00000002754 #33	PFN2 (ENSCLAG00000002686) #35	ENSCLAG00000002482 #36	ANKUB1 (ENSCLAG00000010267)
Degu	MODERN SPECIES	227						ENSODEG00000002995	ENSODEG00000002939	RAP2B (ENSODEG00000019039)	P2RY1 (ENSODEG00000019005)	MBNL1 (ENSODEG00000002786)	ENSODEG00000018810	SUCNR1 (ENSODEG00000002439)	ENSODEG00000001690	AADACL2 (ENSODEG00000001577)	IGSF10 (ENSODEG00000001525) #20	P2RY13 (ENSODEG00000001428) #22	GPR87 (ENSODEG00000001418) #23	ENSODEG00000018659	P2RY14 (ENSODEG00000018702) #24	GPR171 (ENSODEG00000018740) #25	ENSODEG00000001250 #26	ENSODEG00000018681	CLRN1 (ENSODEG00000001218) #28	SIAH2 (ENSODEG00000002127) #29	ENSODEG00000001987 #32	SERP1 (ENSODEG00000001959)	ENSODEG00000018744	ENSODEG00000001871 #33	ENSODEG00000018799	PFN2 (ENSODEG00000001851) #35	RNF13 (ENSODEG00000001130) #36
Guinea pig	MODERN SPECIES	8	MME (ENSCPOG00000007994)	ENSCPOG00000022096	GPR149 (ENSCPOG00000009609)	DHX36 (ENSCPOG00000007716)	ARHGEF26 (ENSCPOG00000007710)	RAP2B (ENSCPOG00000012843)	P2RY1 (ENSCPOG00000015545)	MBNL1 (ENSCPOG00000040271)	SUCNR1 (ENSCPOG00000036828)	AADAC (ENSCPOG00000004154)	AADACL2 (ENSCPOG00000030571)	ENSCPOG00000014355	IGSF10 (ENSCPOG00000009249) #20	ENSCPOG00000009209 #26	ENSCPOG00000031325 #21	P2RY13 (ENSCPOG00000031248) #22	GPR87 (ENSCPOG00000009238) #23	P2RY14 (ENSCPOG00000009235) #24	GPR171 (ENSCPOG00000032865) #25	ENSCPOG00000030351 #26	CLRN1 (ENSCPOG00000001775) #28	SIAH2 (ENSCPOG00000038065) #29	ERICH6 (ENSCPOG00000001509) #30	ENSCPOG00000002576 #31	EIF2A (ENSCPOG00000006568) #32	SERP1 (ENSCPOG00000031272)	TSC22D2 (ENSCPOG00000001481) #33	PFN2 (ENSCPOG00000034416) #35	RNF13 (ENSCPOG00000000517) #36	ENSCPOG00000024921	COMMD2 (ENSCPOG00000031805)
Naked mole-rat female	MODERN SPECIES	27	MBNL1 (ENSHGLG00000012911)	ENSHGLG00000032291	ENSHGLG00000045627	SUCNR1 (ENSHGLG00000012430)	ENSHGLG00000012324	ENSHGLG00000012179	ENSHGLG00000012034	ENSHGLG00000043091	ENSHGLG00000011602	ENSHGLG00000035957	ENSHGLG00000011179	ENSHGLG00000017207	IGSF10 (ENSHGLG00000017197) #20	ENSHGLG00000016620 #26	P2RY12 (ENSHGLG00000039240) #21	P2RY13 (ENSHGLG00000040759) #22	GPR87 (ENSHGLG00000044717) #23	P2RY14 (ENSHGLG00000035292) #24	GPR171 (ENSHGLG00000037015) #25	CLRN1 (ENSHGLG00000017192) #28	ENSHGLG00000044941	ENSHGLG00000018006	ENSHGLG00000017383	ENSHGLG00000019459 #29	ENSHGLG00000040334	ENSHGLG00000019100 #30	EIF2A (ENSHGLG00000019241) #32	SERP1 (ENSHGLG00000043704)	TSC22D2 (ENSHGLG00000017467) #33	ENSHGLG00000037730	PFN2 (ENSHGLG00000017453) #35