Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000153769.F #21
Gnathostomata	ANCESTRAL SPECIES	224							ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Euteleostomi	ANCESTRAL SPECIES	72	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Actinopterygii	ANCESTRAL SPECIES	88	ENSGT00940000154655.a	ENSGT01030000235077	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000155682
Neopterygii	DUPLICATION
Neopterygii	ANCESTRAL SPECIES	23	ENSGT00960000187692 #7	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a #9	ENSGT00950000183108.a #10	ENSGT00940000155112.B #11	ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.m #21	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33
Osteoglossocephalai	ANCESTRAL SPECIES	44	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.m #21	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a #33	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000155682.h	ENSGT01030000235116
Clupeocephala	ANCESTRAL SPECIES	24	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k #33	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000155682.h	ENSGT01030000235116
Otomorpha	ANCESTRAL SPECIES	161	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000166273	ENSGT00940000165573	ENSGT00940000158454
Clupeiformes	ANCESTRAL SPECIES	83	ENSGT00390000004428.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d #9	ENSGT00530000063085.A.a	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619
Atlantic herring	MODERN SPECIES		ENSCHAG00000000077	zgc:112148 (ENSCHAG00000000080)	TMEM65 (ENSCHAG00000000084)	MTSS1 (ENSCHAG00000000088) #9	ENSCHAG00000000093	scgn (ENSCHAG00000000098) #10	CARMIL1 (ENSCHAG00000000278) #11	ENSCHAG00000002964 #12	TNFRSF11B (ENSCHAG00000002978) #13	ENSCHAG00000002997 #14	CCN3 (ENSCHAG00000003088) #16	enpp2 (ENSCHAG00000003581) ##17	taf2 (ENSCHAG00000005735) #18	dscc1 (ENSCHAG00000008126) #19	deptor (ENSCHAG00000008201) #20	COL14A1 (ENSCHAG00000008314) #22	mrpl13 (ENSCHAG00000009796) #23	MTBP (ENSCHAG00000009815) #24	sntb1 (ENSCHAG00000009846) #25	has2 (ENSCHAG00000009866) #26	ANKIB1 (ENSCHAG00000009889)	ENSCHAG00000009934	ENSCHAG00000009942	HEY1 (ENSCHAG00000009967)	stmn2a (ENSCHAG00000009976)	upp1 (ENSCHAG00000009987)	ENSCHAG00000010007	rbm12bb (ENSCHAG00000010037)	ENSCHAG00000010045	SETD2 (ENSCHAG00000010089)	ENSCHAG00000011666
Denticle herring	MODERN SPECIES	17	MTSS1 (ENSDCDG00000013394) #9	ENSDCDG00000013364	scgn (ENSDCDG00000013341) #10	CARMIL1 (ENSDCDG00000005468) #11	ENSDCDG00000029054 #12	TNFRSF11B (ENSDCDG00000029049) #13	si:ch211-93i7.4 (ENSDCDG00000029046) #14	mal2 (ENSDCDG00000029044) #15	ENSDCDG00000029039	ENSDCDG00000029038	CCN3 (ENSDCDG00000029036) #16	enpp2 (ENSDCDG00000026782) ##17	taf2 (ENSDCDG00000025419) #18	dscc1 (ENSDCDG00000025364) #19	deptor (ENSDCDG00000025350) #20	COL14A1 (ENSDCDG00000021256) #22	mrpl13 (ENSDCDG00000021151) #23	MTBP (ENSDCDG00000021125) #24	sntb1 (ENSDCDG00000021117) #25	has2 (ENSDCDG00000021114) #26	ANKIB1 (ENSDCDG00000021109)	ENSDCDG00000021104	ENSDCDG00000021103	upp1 (ENSDCDG00000021101)	ENSDCDG00000021099	ENSDCDG00000021097	ENSDCDG00000021092	SETD2 (ENSDCDG00000021073)	ENSDCDG00000021066	NBEAL2 (ENSDCDG00000016724)	ccdc12 (ENSDCDG00000016663)
Otophysi	ANCESTRAL SPECIES	1	ENSGT01050000244814.b.b	ENSGT00940000159441.k	ENSGT00940000177093	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166273	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000159441.k	ENSGT01100000263479.H.d	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000164374.A.c.a.b	ENSGT00940000164374.A.c.a.a.a	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423.k	ENSGT00940000157619.a.a	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619
Channel catfish	MODERN SPECIES		VISI (ENSIPUG00000008303)	ENSIPUG00000008325	fdps (ENSIPUG00000008338)	ENSIPUG00000008355	NF7B (ENSIPUG00000008380)	ENSIPUG00000008434	ash1l (ENSIPUG00000008470)	dap3 (ENSIPUG00000008508)	GBA (ENSIPUG00000008582)	Rnf115 (ENSIPUG00000008615)	polr3c (ENSIPUG00000008657)	ITGA10 (ENSIPUG00000008701)	crabp2a (ENSIPUG00000008754)	dscc1 (ENSIPUG00000008773) #19	deptor (ENSIPUG00000008868) #20	col14a1 (ENSIPUG00000008935) #22	mrpl13 (ENSIPUG00000009071) #23	mtbp (ENSIPUG00000009168) #24	sntb1 (ENSIPUG00000009370) #25	has2 (ENSIPUG00000009384) #26	ankib1 (ENSIPUG00000009420)	fabp4b (ENSIPUG00000009571)	stmn2a (ENSIPUG00000009580)	mrps2 (ENSIPUG00000009591)	upp1 (ENSIPUG00000009618)	upp1 (ENSIPUG00000009716)	c1h8orf88 (ENSIPUG00000001158)	RBM12B (ENSIPUG00000001167)	ENSIPUG00000001176	ENSIPUG00000001189	ENSIPUG00000001215
Characiphysae_b	ANCESTRAL SPECIES	15	ENSGT00940000159441.k	ENSGT01100000263479.H.d	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000164374.A.c.a.b	ENSGT00940000164374.A.c.a.a.a	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423.k	ENSGT00940000157619.a.a	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157068.d	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000166273	ENSGT00940000165573	ENSGT00940000158454
Electric eel	MODERN SPECIES	33	fdps (ENSEEEG00000012857)	ENSEEEG00000012866	ENSEEEG00000012867	trim109 (ENSEEEG00000012868)	ENSEEEG00000012871	ENSEEEG00000012876	dap3 (ENSEEEG00000012878)	GBA1 (ENSEEEG00000012886)	rnf115a (ENSEEEG00000012963)	polr3c (ENSEEEG00000012964)	ITGA10 (ENSEEEG00000012968)	ENSEEEG00000012970	crabp2a (ENSEEEG00000012971)	dscc1 (ENSEEEG00000012974) #19	deptor (ENSEEEG00000012975) #20	COL14A1 (ENSEEEG00000012983) #22	mrpl13 (ENSEEEG00000012987) #23	MTBP (ENSEEEG00000012992) #24	sntb1 (ENSEEEG00000012999) #25	has2 (ENSEEEG00000013001) #26	ANKIB1 (ENSEEEG00000013010)	fabp4b (ENSEEEG00000013042)	HEY1 (ENSEEEG00000013222)	stmn2a (ENSEEEG00000013238)	upp1 (ENSEEEG00000013284)	ENSEEEG00000013286	rbm12bb (ENSEEEG00000013287)	SETD2 (ENSEEEG00000013290)	ENSEEEG00000013294	NBEAL2 (ENSEEEG00000013301)	ccdc12 (ENSEEEG00000013389)
Characoidei	ANCESTRAL SPECIES																	ENSGT00940000153769.F.n #22
Red-bellied piranha	MODERN SPECIES	1141																COL14A1 (ENSPNAG00000005146) #22
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT00610000087473	ENSGT00390000008061.j.b	ENSGT00900000141074	ENSGT00940000164374.A.c.a.b	ENSGT00900000141033.b.b.o	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166273	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619	ENSGT00940000154022.a.b	ENSGT00940000177026
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	7	ENSGT01050000244814.b.b.b	ENSGT00940000159441.k.f	ENSGT00940000177093	ENSGT00390000008061.j.b.c.b.a.a	ENSGT00900000141074.t	ENSGT00900000141033.b.b.o.a	ENSGT00940000156698.d.a	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c.a	ENSGT00390000002799.h	ENSGT00940000158423.i	ENSGT00940000157619.a.a.c	ENSGT00390000017400.a #19	ENSGT00520000055667.e #20	ENSGT00940000153769.F.n.a #22	ENSGT00390000001515.i #23	ENSGT00390000003305.d #24	ENSGT00950000182863.A.b.a #25	ENSGT00390000010337.B.a.b.u #26	ENSGT00940000157621.i	ENSGT00940000164547.b.b.d	ENSGT01030000234597.a.b.b.e.b.t.a.b	ENSGT00940000157781.f
Goldfish	MODERN SPECIES	35	grwd1 (ENSCARG00000044638)	cdc42ep5 (ENSCARG00000044634)	atg12 (ENSCARG00000044611)	ENSCARG00000044604	rcvrn2 (ENSCARG00000044591)	ENSCARG00000044587	fdps (ENSCARG00000044457)	ENSCARG00000044422	ENSCARG00000044398	rnf115a (ENSCARG00000044326)	polr3c (ENSCARG00000044180)	ITGA10 (ENSCARG00000043627)	crabp2a (ENSCARG00000043578)	dscc1 (ENSCARG00000043452) #19	deptor (ENSCARG00000043410) #20	COL14A1 (ENSCARG00000039769) #22	mrpl13 (ENSCARG00000039538) #23	sntb1 (ENSCARG00000039520) #25	has2 (ENSCARG00000039506) #26	ANKIB1 (ENSCARG00000039423)	ENSCARG00000039390	stmn2a (ENSCARG00000039377)	upp1 (ENSCARG00000039324)	rnf144b (ENSCARG00000039292)	ENSCARG00000039278	ccdc127a (ENSCARG00000039248)	mrpl32 (ENSCARG00000039215)	psma2a (ENSCARG00000038490)	ATAD2 (ENSCARG00000037549) #33	ZHX1 (ENSCARG00000037438) #32	washc5 (ENSCARG00000037124)
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00390000016654.u	ENSGT01050000244814.b.b.b	ENSGT00940000159441.k.f	ENSGT00940000177093	ENSGT00390000008061.j.b.c.b.a.a	ENSGT00900000141074.t	ENSGT00900000141033.b.b.o.a	ENSGT00940000156698.d.a	ENSGT00390000015248	ENSGT00940000157203.c.a	ENSGT00390000002799.h	ENSGT00940000158423.i	ENSGT00940000157619.a.a.c	ENSGT00390000017400.a #19	ENSGT00520000055667.e #20	ENSGT00940000153769.F.n.a #22	ENSGT00390000001515.i #23	ENSGT00390000003305.d #24	ENSGT00950000182863.A.b.a #25	ENSGT00390000010337.B.a.b.u #26	ENSGT00940000157621.i	ENSGT00940000164547.b.b.d	ENSGT01030000234597.a.b.b.e.b.t.a.b	ENSGT00940000157781.f	ENSGT01030000235080.b	ENSGT00940000158322.i.l	ENSGT00940000166273.c	ENSGT00940000165573.a	ENSGT00940000158454.m	ENSGT00390000011619.b	ENSGT00940000154022.a.b.g
Common carp reference	MODERN SPECIES	2	rcvrn2 (ENSCCRG00000074965)	ENSCCRG00000001159	fdps (ENSCCRG00000001135)	ENSCCRG00000001086	trim109 (ENSCCRG00000081792)	ENSCCRG00000043356	dap3 (ENSCCRG00000043398)	rnf115a (ENSCCRG00000076214)	polr3c (ENSCCRG00000043910)	ENSCCRG00000074510	ITGA10 (ENSCCRG00000029377)	crabp2a (ENSCCRG00000000451)	dscc1 (ENSCCRG00000012960) #19	deptor (ENSCCRG00000012964) #20	ENSCCRG00000079224	COL14A1 (ENSCCRG00000065350) #22	mrpl13 (ENSCCRG00000076250) #23	MTBP (ENSCCRG00000005425) #24	sntb1 (ENSCCRG00000005461) #25	has2 (ENSCCRG00000076666) #26	ENSCCRG00000052191	ENSCCRG00000071321	stmn2a (ENSCCRG00000054714)	upp1 (ENSCCRG00000052183)	rbm12bb (ENSCCRG00000075700)	ENSCCRG00000068120	ENSCCRG00000071968	ENSCCRG00000052173	ccdc12 (ENSCCRG00000075774)	ENSCCRG00000051664	ENSCCRG00000063505
Golden-line barbel	MODERN SPECIES	35														dscc1 (ENSSGRG00000005381) #19	deptor (ENSSGRG00000005389) #20	COL14A1 (ENSSGRG00000005398) #22	mrpl13 (ENSSGRG00000005406) #23	MTBP (ENSSGRG00000005408) #24	sntb1 (ENSSGRG00000005419) #25	has2 (ENSSGRG00000005422) #26	ANKIB1 (ENSSGRG00000005431)	ENSSGRG00000006291	stmn2a (ENSSGRG00000006293)	upp1 (ENSSGRG00000006295)	ENSSGRG00000006311	rbm12bb (ENSSGRG00000006315)	ENSSGRG00000006337	ENSSGRG00000006692	ENSSGRG00000006695	NBEAL2 (ENSSGRG00000006705)	ccdc12 (ENSSGRG00000006707)
Cyprininae	ANCESTRAL SPECIES	106									ENSGT00940000157203.c.b	ENSGT00390000002799.g	ENSGT00940000158423.j	ENSGT00940000157619.a.a.d	ENSGT01030000234784	ENSGT00390000017400.b #19	ENSGT00520000055667.f #20	ENSGT00940000153769.F.n.b #22	ENSGT00390000001515.j.a #23	ENSGT00390000003305.c #24	ENSGT00950000182863.A.b.b #25	ENSGT00390000010337.B.a.b.v #26	ENSGT00940000157621.j	ENSGT00940000164547.b.b.c	ENSGT01030000234597.a.b.b.e.b.t.a.a	ENSGT00940000157781.e	ENSGT01030000235080.a	ENSGT00940000158322.i.k	ENSGT00940000166273.d	ENSGT00940000165573.b	ENSGT00940000158454.n	ENSGT00390000011619	ENSGT00940000154022.a.b.h
Cyprininae_a	ANCESTRAL SPECIES	6	ENSGT00940000159441.k.e	ENSGT00610000087473	ENSGT00390000008061.j.b.c.b.a.b.a	ENSGT00900000141074.s	ENSGT00900000141033.b.b.o.b	ENSGT00940000164374.A.c.a.b.a	ENSGT00940000156698.d.b	ENSGT00390000009464	ENSGT00940000157203.c.b	ENSGT00390000002799.g	ENSGT00940000158423.j	ENSGT00940000157619.a.a.d	ENSGT01030000234784	ENSGT00390000017400.b #19	ENSGT00520000055667.f #20	ENSGT00940000153769.F.n.b #22	ENSGT00390000001515.j.a #23	ENSGT00390000003305.c #24	ENSGT00950000182863.A.b.b #25	ENSGT00390000010337.B.a.b.v #26	ENSGT00940000157621.j	ENSGT00940000164547.b.b.c	ENSGT01030000234597.a.b.b.e.b.t.a.a	ENSGT00940000157781.e	ENSGT01030000235080.a	ENSGT00940000158322.i.k	ENSGT00940000166273.d	ENSGT00940000165573.b	ENSGT00940000158454.n	ENSGT00390000011619.a	ENSGT00940000154022.a.b.h
Common carp reference	MODERN SPECIES	47	ENSCCRG00000058707	rcvrn2 (ENSCCRG00000001178)	ENSCCRG00000061967	ENSCCRG00000001176	fdps (ENSCCRG00000001171)	ENSCCRG00000001167	trim109 (ENSCCRG00000061675)	ENSCCRG00000070677	ENSCCRG00000043850	rnf115a (ENSCCRG00000043890)	polr3c (ENSCCRG00000001195)	ITGA10 (ENSCCRG00000004992)	crabp2a (ENSCCRG00000001260)	dscc1 (ENSCCRG00000001270) #19	deptor (ENSCCRG00000075215) #20	COL14A1 (ENSCCRG00000001581) #22	mrpl13 (ENSCCRG00000042788) #23	MTBP (ENSCCRG00000033144) #24	sntb1 (ENSCCRG00000033150) #25	has2 (ENSCCRG00000017616) #26	ENSCCRG00000043829	ENSCCRG00000069741	stmn2a (ENSCCRG00000043852)	upp1 (ENSCCRG00000043865)	ENSCCRG00000054598	rbm12bb (ENSCCRG00000052180)	ENSCCRG00000052156	ENSCCRG00000052154	ENSCCRG00000052140	ccdc12 (ENSCCRG00000027684)	ENSCCRG00000027678
Golden-line barbel	MODERN SPECIES	221				fdps (ENSSGRG00000014062)	ENSSGRG00000014086	trim109 (ENSSGRG00000014088)	ENSSGRG00000014090	GBA1 (ENSSGRG00000014092)	rnf115a (ENSSGRG00000014126)	polr3c (ENSSGRG00000014139)	ITGA10 (ENSSGRG00000014164)	crabp2a (ENSSGRG00000014269)	ENSSGRG00000014275	dscc1 (ENSSGRG00000014277) #19	deptor (ENSSGRG00000014315) #20	COL14A1 (ENSSGRG00000014336) #22	mrpl13 (ENSSGRG00000014782) #23	MTBP (ENSSGRG00000014788) #24	sntb1 (ENSSGRG00000014791) #25	has2 (ENSSGRG00000014798) #26	ANKIB1 (ENSSGRG00000014802)	ENSSGRG00000014854	stmn2a (ENSSGRG00000014855)	upp1 (ENSSGRG00000014858)	ENSSGRG00000014863	rbm12bb (ENSSGRG00000014864)	SETD2 (ENSSGRG00000014868)	ENSSGRG00000014928	NBEAL2 (ENSSGRG00000014935)	ccdc12 (ENSSGRG00000014999)	ENSSGRG00000015002
Goldfish	MODERN SPECIES	7	ENSCARG00000047769	rcvrn2 (ENSCARG00000047755)	ENSCARG00000047743	fdps (ENSCARG00000047647)	ENSCARG00000047607	trim109 (ENSCARG00000047547)	ENSCARG00000047529	dap3 (ENSCARG00000045394)	GBA1 (ENSCARG00000047165)	rnf115a (ENSCARG00000045237)	polr3c (ENSCARG00000044682)	ITGA10 (ENSCARG00000044418)	crabp2a (ENSCARG00000044368)	dscc1 (ENSCARG00000044273) #19	deptor (ENSCARG00000044259) #20	COL14A1 (ENSCARG00000042027) #22	mrpl13 (ENSCARG00000041851) #23	MTBP (ENSCARG00000041712) #24	sntb1 (ENSCARG00000041658) #25	has2 (ENSCARG00000041625) #26	ANKIB1 (ENSCARG00000041469)	ENSCARG00000041405	stmn2a (ENSCARG00000041360)	upp1 (ENSCARG00000041311)	ENSCARG00000041287	rbm12bb (ENSCARG00000041277)	ENSCARG00000041122	ENSCARG00000041078	NBEAL2 (ENSCARG00000033080)	ccdc12 (ENSCARG00000032589)	ENSCARG00000032569
Zebrafish	MODERN SPECIES	7	ENSDARG00000094385	ENSDARG00000095688	fdps (ENSDARG00000040890)	ENSDARG00000078125	trim109 (ENSDARG00000062429)	ENSDARG00000090817	dap3 (ENSDARG00000078500)	GBA1 (ENSDARG00000076058)	rnf115a (ENSDARG00000062450)	polr3c (ENSDARG00000057562)	ITGA10 (ENSDARG00000002507)	crabp2a (ENSDARG00000073978)	ENSDARG00000094303	dscc1 (ENSDARG00000019907) #19	deptor (ENSDARG00000040930) #20	COL14A1 (ENSDARG00000005762) #22	mrpl13 (ENSDARG00000056903) #23	MTBP (ENSDARG00000090447) #24	sntb1 (ENSDARG00000041729) #25	has2 (ENSDARG00000036987) #26	UBE2O (ENSDARG00000100674)	ANKIB1 (ENSDARG00000076829)	fabp4b (ENSDARG00000002311)	stmn2a (ENSDARG00000033234)	upp1 (ENSDARG00000040869)	gra (ENSDARG00000078754)	rbm12bb (ENSDARG00000079717)	ENSDARG00000062244	ENSDARG00000057143	NBEAL2 (ENSDARG00000098641)	ccdc12 (ENSDARG00000023003)
Euteleosteomorpha	ANCESTRAL SPECIES	77	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k #33	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000155682.h	ENSGT01030000235116
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k #33	ENSGT00550000074870.z	ENSGT00390000014996	ENSGT00940000155682.h	ENSGT01030000235116
Salmoninae	ANCESTRAL SPECIES	2	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.b #20	ENSGT00520000055667.g.a #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k #33	ENSGT00550000074870.z	ENSGT00550000074870.y.a	ENSGT00390000014996	ENSGT00940000155682.h
Huchen	MODERN SPECIES	1811															ENSHHUG00000012703	COL14A1 (ENSHHUG00000012716) #22
Salmoninae_a	ANCESTRAL SPECIES	53	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.b #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k #33	ENSGT00550000074870.y.a	ENSGT00390000014996	ENSGT00940000155682.h	ENSGT00910000144277.f.a.b.a
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	52	ENSGT01090000260907	ENSGT01030000238736	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a.a.b #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374.b #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.b #20	ENSGT00940000153769.F.n.d #22	ENSGT00940000153769.F.n.c #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b.f #25	ENSGT01060000250439
River trout	MODERN SPECIES	158					ENSSTUG00000028015 #12	TNFRSF11B (ENSSTUG00000027996) #13	si:ch211-93i7.4 (ENSSTUG00000027979) #14	mal2 (ENSSTUG00000027966) #15	ENSSTUG00000027962	CCN3 (ENSSTUG00000027956) #16	enpp2 (ENSSTUG00000027432) ##17	taf2 (ENSSTUG00000026111) #18	dscc1 (ENSSTUG00000026004) #19	deptor (ENSSTUG00000025942) #20	ENSSTUG00000025936	COL14A1 (ENSSTUG00000020764) #22	mrpl13 (ENSSTUG00000020565) #23	MTBP (ENSSTUG00000020408) #24
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000105113	ENSSSAG00000099112	ENSSSAG00000121994 #9	segn (ENSSSAG00000036507) #10	ENSSSAG00000090807 #11	ENSSSAG00000092401 #12	ENSSSAG00000037747	TNFRSF11B (ENSSSAG00000105508) #13	si:ch211-93i7.4 (ENSSSAG00000108018) #14	CCN3 (ENSSSAG00000038088) #16	ENSSSAG00000036921 ##17	taf2 (ENSSSAG00000118190) #18	dscc1 (ENSSSAG00000104335) #19	deptor (ENSSSAG00000088901) #20	ENSSSAG00000117573	COL14A1 (ENSSSAG00000120448) #22	mrpl13 (ENSSSAG00000002931) #23	MTBP (ENSSSAG00000087925) #24	ENSSSAG00000109630	sntb1 (ENSSSAG00000106832) #25	has2 (ENSSSAG00000105909) #26	ENSSSAG00000093494	ZHX2 (ENSSSAG00000098909) #27	DERL1 (ENSSSAG00000010032) #28	TBC1D31 (ENSSSAG00000085063) #29	FAM83A (ENSSSAG00000100054) #30	C8orf76 (ENSSSAG00000106618) #31	ZHX1 (ENSSSAG00000060147) #32	ATAD2 (ENSSSAG00000003726) #33	ENSSSAG00000109085	mrpl32 (ENSSSAG00000112733)
Salmo	ANCESTRAL SPECIES	52	ENSGT00390000017802.d	ENSGT01090000260907	ENSGT01030000238736	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a.a.b #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374.b #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.b #20	ENSGT00940000153769.F.n.d #22	ENSGT00940000153769.F.n.c #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b.f #25	ENSGT01060000250439
River trout	MODERN SPECIES	631	MTSS1 (ENSSTUG00000039708) #9	ENSSTUG00000039914	scgn (ENSSTUG00000039917) #10	CARMIL1 (ENSSTUG00000040055) #11	ENSSTUG00000042583	ENSSTUG00000042603 #12	TNFRSF11B (ENSSTUG00000029050) #13	si:ch211-93i7.4 (ENSSTUG00000029063) #14	mal2 (ENSSTUG00000029083) #15	CCN3 (ENSSTUG00000029093) #16	enpp2 (ENSSTUG00000029111) ##17	ENSSTUG00000029671	taf2 (ENSSTUG00000029718) #18	dscc1 (ENSSTUG00000031290) #19	deptor (ENSSTUG00000031306) #20	COL14A1 (ENSSTUG00000031534) #22	mrpl13 (ENSSTUG00000032799) #23	zgc:194202 (ENSSTUG00000032842)
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000120938	ENSSSAG00000104318	ENSSSAG00000118072 #9	ENSSSAG00000113655	ENSSSAG00000116949 #10	ENSSSAG00000093282 #11	ENSSSAG00000059768	ENSSSAG00000099084 #12	TNFRSF11B (ENSSSAG00000046727) #13	si:ch211-93i7.4 (ENSSSAG00000011938) #14	CCN3 (ENSSSAG00000119232) #16	ENSSSAG00000095772 ##17	taf2 (ENSSSAG00000087825) #18	dscc1 (ENSSSAG00000088925) #19	deptor (ENSSSAG00000094475) #20	COL14A1 (ENSSSAG00000108222) #22	ENSSSAG00000095408	mrpl13 (ENSSSAG00000102301) #23	MTBP (ENSSSAG00000105331) #24	sntb1 (ENSSSAG00000118778) #25	has2 (ENSSSAG00000092898) #26	ENSSSAG00000046775	TBC1D31 (ENSSSAG00000108038) #29	DERL1 (ENSSSAG00000057804) #28	FAM83A (ENSSSAG00000094716) #30	C8orf76 (ENSSSAG00000092557) #31	ZHX1 (ENSSSAG00000089277) #32	ATAD2 (ENSSSAG00000059621) #33	ENSSSAG00000015902	mrpl32 (ENSSSAG00000109063)	ENSSSAG00000098505
Oncorhynchus	ANCESTRAL SPECIES	50	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.c.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a.a #11	ENSGT00940000155112.B.a.b #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.a #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k.g.a #33	ENSGT00550000074870.z	ENSGT00550000074694.a.k.h #33	ENSGT00550000074870.y.a	ENSGT00390000014996
Oncorhynchus_a	ANCESTRAL SPECIES	101					ENSGT00940000155112.B.a.b #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.B ##17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.g.b #20	ENSGT00520000055667.g.a #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305.a #24	ENSGT00950000182863.A.b #25	ENSGT01060000250439.b	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a.k.g.a #33	ENSGT00550000074870.z	ENSGT00550000074694.a.k.h #33	ENSGT00550000074870.y.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	31	MTSS1 (ENSOKIG00005050000) #9	ENSOKIG00005049980	TMEM65 (ENSOKIG00005049979)	ENSOKIG00005049975	CARMIL1 (ENSOKIG00005049853) #11	ENSOKIG00005049827 #12	TNFRSF11B (ENSOKIG00005049821) #13	si:ch211-93i7.4 (ENSOKIG00005049819) #14	mal2 (ENSOKIG00005049817) #15	CCN3 (ENSOKIG00005049815) #16	enpp2 (ENSOKIG00005049347) ##17	ENSOKIG00005049235	taf2 (ENSOKIG00005048929) #18	dscc1 (ENSOKIG00005048820) #19	deptor (ENSOKIG00005048769) #20	COL14A1 (ENSOKIG00005048051) #22	mrpl13 (ENSOKIG00005047934) #23	MTBP (ENSOKIG00005047920) #24	sntb1 (ENSOKIG00005047905) #25	ENSOKIG00005047896	ENSOKIG00005047893	has2 (ENSOKIG00005047886) #26	ENSOKIG00005047881	derl1 (ENSOKIG00005047873) #28	TBC1D31 (ENSOKIG00005047778) #29	ENSOKIG00005047750 #30	C8orf76 (ENSOKIG00005047743) #31	ZHX1 (ENSOKIG00005047731) #32	ATAD2 (ENSOKIG00005047340) #33	ENSOKIG00005047231	mrpl32 (ENSOKIG00005047214)
Coho salmon	MODERN SPECIES	382														ENSOKIG00005023851	ENSOKIG00005023842	ENSOKIG00005023788 #22
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000062944 #11	ENSOMYG00000058184	ENSOMYG00000072640	ENSOMYG00000069508	ENSOMYG00000048320 #12	TNFRSF11B (ENSOMYG00000053518) #13	ENSOMYG00000068866	ENSOMYG00000051749	si:ch211-93i7.4 (ENSOMYG00000028979) #14	mal2 (ENSOMYG00000076128) #15	CCN3 (ENSOMYG00000076466) #16	enpp2 (ENSOMYG00000024404) ##17	taf2 (ENSOMYG00000067404) #18	dscc1 (ENSOMYG00000025144) #19	deptor (ENSOMYG00000025343) #20	COL14A1 (ENSOMYG00000057449) #22	ENSOMYG00000050512	mrpl13 (ENSOMYG00000027326) #23	MTBP (ENSOMYG00000027394) #24	ENSOMYG00000061955	sntb1 (ENSOMYG00000056544) #25	has2 (ENSOMYG00000062680) #26	ENSOMYG00000071156	TBC1D31 (ENSOMYG00000026143) #29	DERL1 (ENSOMYG00000057377) #28	ENSOMYG00000071197 #30	C8orf76 (ENSOMYG00000000470) #31	ZHX1 (ENSOMYG00000000465) #32	ATAD2 (ENSOMYG00000073351) #33	ENSOMYG00000025729	mrpl32 (ENSOMYG00000026319)
Northern pike	MODERN SPECIES	15	LPCAT1 (ENSELUG00000002646)	ENSELUG00000024565	CARMIL1 (ENSELUG00000024518) #11	ENSELUG00000024407 #12	ENSELUG00000030865 #12	si:ch211-93i7.4 (ENSELUG00000024237) #14	mal2 (ENSELUG00000024226) #15	TNFRSF11B (ENSELUG00000024329) #13	CCN3 (ENSELUG00000024180) #16	enpp2 (ENSELUG00000023691) ##17	taf2 (ENSELUG00000023605) #18	dscc1 (ENSELUG00000023509) #19	deptor (ENSELUG00000023449) #20	ENSELUG00000034146	ENSELUG00000028160	COL14A1 (ENSELUG00000023377) #22	mrpl13 (ENSELUG00000023304) #23	MTBP (ENSELUG00000023257) #24	sntb1 (ENSELUG00000023160) #25	has2 (ENSELUG00000023115) #26	derl1 (ENSELUG00000023097) #28	TBC1D31 (ENSELUG00000023075) #29	FAM83A (ENSELUG00000023006) #30	zgc:101716 (ENSELUG00000022978) #31	ZHX1 (ENSELUG00000028591) #32	ATAD2 (ENSELUG00000022957) #33	ENSELUG00000022852	mrpl32 (ENSELUG00000031845)	ENSELUG00000021999	sdha (ENSELUG00000021942)	ccdc127a (ENSELUG00000021920)
Acanthomorphata	ANCESTRAL SPECIES	107	ENSGT00390000008818	ENSGT00390000012014.A	ENSGT00390000014996	ENSGT00550000074870	ENSGT00550000074694.a.k #33	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00390000011435 #31	ENSGT00940000160768 #30	ENSGT00940000153859.b #29	ENSGT00530000063156.b #28	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00390000010337.B.a.b #26	ENSGT00950000182863.A.b #25	ENSGT00390000003305 #24	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000159963 #16	ENSGT00950000183108.a.c #10
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000004191.e	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00940000163454.a.b	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000159963 #16
Fugu	MODERN SPECIES	19	nr0b2a (ENSTRUG00000013270)	KDF1 (ENSTRUG00000013266)	ENSTRUG00000013261	tmem222a (ENSTRUG00000013224)	wdtc1 (ENSTRUG00000013148)	CEP85 (ENSTRUG00000013057)	ENSTRUG00000012968	ENSTRUG00000012819	CLEC3B (ENSTRUG00000012771)	cdcp1a (ENSTRUG00000012734)	dnali1 (ENSTRUG00000012726)	TMEM158 (ENSTRUG00000023519)	lars2 (ENSTRUG00000012513)	LIMD1 (ENSTRUG00000025656)	deptor (ENSTRUG00000012469) #20	COL14A1 (ENSTRUG00000012345) #22	ENSTRUG00000020053	ENSTRUG00000030825	ENSTRUG00000012025	ENSTRUG00000011927	MRS2 (ENSTRUG00000011868)	ENSTRUG00000028405	ENSTRUG00000032169	ENSTRUG00000011167	ndrg1b (ENSTRUG00000010966)	PTP4A3 (ENSTRUG00000010904)	ENSTRUG00000010724	ENSTRUG00000010534 #24	sntb1 (ENSTRUG00000010268) #25	CCN3 (ENSTRUG00000010104) #16	scgn (ENSTRUG00000009987) #10
Tetraodon	MODERN SPECIES	23	gpatch3 (ENSTNIG00000009657)	ENSTNIG00000009656	nr0b2a (ENSTNIG00000009655)	KDF1 (ENSTNIG00000009654)	tpbgl (ENSTNIG00000009653)	tmem222a (ENSTNIG00000009652)	wdtc1 (ENSTNIG00000009651)	ENSTNIG00000001431	CEP85 (ENSTNIG00000009650)	ENSTNIG00000009649	CLEC3B (ENSTNIG00000009648)	cdcp1a (ENSTNIG00000001625)	lars2 (ENSTNIG00000009647)	LIMD1 (ENSTNIG00000009646)	deptor (ENSTNIG00000009645) #20	COL14A1 (ENSTNIG00000009644) #22	mrpl13 (ENSTNIG00000009643) #23	dscc1 (ENSTNIG00000009642) #19	ENSTNIG00000009641	CPQ (ENSTNIG00000009640)	ENSTNIG00000009639	MRS2 (ENSTNIG00000009638)	CLPTM1L (ENSTNIG00000009637)	ENSTNIG00000009636	ndrg1b (ENSTNIG00000009635)	ENSTNIG00000009634	ENSTNIG00000009633	ENSTNIG00000009632 #24	sntb1 (ENSTNIG00000009631) #25	CCN3 (ENSTNIG00000009630) #16	scgn (ENSTNIG00000009629) #10
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Ballan wrasse	MODERN SPECIES	320																COL14A1 (ENSLBEG00000006199) #22	mrpl13 (ENSLBEG00000006340) #23	dscc1 (ENSLBEG00000006380) #19	deptor (ENSLBEG00000006472) #20	LIMD1 (ENSLBEG00000006501)	lars2 (ENSLBEG00000006552)	cdcp1a (ENSLBEG00000006669)	CLEC3B (ENSLBEG00000006726)	ENSLBEG00000006748	ENSLBEG00000006805	CEP85 (ENSLBEG00000006860)	wdtc1 (ENSLBEG00000006897)	tmem222a (ENSLBEG00000006974)	tpbgl (ENSLBEG00000007001)	ENSLBEG00000007012	nr0b2a (ENSLBEG00000007031)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
European seabass	MODERN SPECIES	6	ENSDLAG00005018442	nr0b2a (ENSDLAG00005018436)	tpbgl (ENSDLAG00005018444)	tmem222a (ENSDLAG00005032304)	wdtc1 (ENSDLAG00005004338)	ENSDLAG00005004594	ENSDLAG00005004677	ENSDLAG00005034322	cdcp1a (ENSDLAG00005004860)	TMEM158 (ENSDLAG00005004876)	lars2 (ENSDLAG00005004900)	LIMD1 (ENSDLAG00005005511)	deptor (ENSDLAG00005005578) #20	ENSDLAG00005002727	ENSDLAG00005015521	ENSDLAG00005005702 #22	mrpl13 (ENSDLAG00005008859) #23	ENSDLAG00005008929 #19	ENSDLAG00005008944	ENSDLAG00005033849	ENSDLAG00005008960	ENSDLAG00005008837	ENSDLAG00005009003	ENSDLAG00005029429	ENSDLAG00005009094	ENSDLAG00005010051	ENSDLAG00005010647	ENSDLAG00005027731	ENSDLAG00005010669	ENSDLAG00005031405 #25	ENSDLAG00005010770 #24
Large yellow croaker	MODERN SPECIES	484	gpatch3 (ENSLCRG00005017294)	nr0b2a (ENSLCRG00005017297)	ENSLCRG00005002912	tpbgl (ENSLCRG00005002945)	tmem222a (ENSLCRG00005002967)	CEP85 (ENSLCRG00005003005)	wdtc1 (ENSLCRG00005003097)	ENSLCRG00005003205	ENSLCRG00005003235	CLEC3B (ENSLCRG00005003283)	cdcp1a (ENSLCRG00005003299)	TMEM158 (ENSLCRG00005003309)	lars2 (ENSLCRG00005003551)	LIMD1 (ENSLCRG00005006444)	deptor (ENSLCRG00005006448) #20	COL14A1 (ENSLCRG00005006535) #22	mrpl13 (ENSLCRG00005006813) #23	dscc1 (ENSLCRG00005006815) #19	CPQ (ENSLCRG00005006832)	ENSLCRG00005006902	MRS2 (ENSLCRG00005006915)	CLPTM1L (ENSLCRG00005006921)	ENSLCRG00005006925	ENSLCRG00005007690	ENSLCRG00005016333	ENSLCRG00005016375	ENSLCRG00005016397 #24	sntb1 (ENSLCRG00005016459) #25	ENSLCRG00005016465	CCN3 (ENSLCRG00005016470) #16	scgn (ENSLCRG00005016481) #10
Gilthead seabream	MODERN SPECIES	8	nr0b2a (ENSSAUG00010014444)	KDF1 (ENSSAUG00010014441)	tpbgl (ENSSAUG00010014440)	tmem222a (ENSSAUG00010014436)	wdtc1 (ENSSAUG00010014359)	CEP85 (ENSSAUG00010014340)	ENSSAUG00010014337	ENSSAUG00010014333	CLEC3B (ENSSAUG00010014331)	cdcp1a (ENSSAUG00010014327)	TMEM158 (ENSSAUG00010014322)	lars2 (ENSSAUG00010013465)	LIMD1 (ENSSAUG00010013425)	ENSSAUG00010013421	deptor (ENSSAUG00010013418) #20	COL14A1 (ENSSAUG00010012438) #22	mrpl13 (ENSSAUG00010012398) #23	dscc1 (ENSSAUG00010012389) #19	ENSSAUG00010012385	CPQ (ENSSAUG00010012241)	ENSSAUG00010012233	ENSSAUG00010012230	MRS2 (ENSSAUG00010012223)	CLPTM1L (ENSSAUG00010012217)	ENSSAUG00010012215	ENSSAUG00010003078	ENSSAUG00010001903	PTP4A3 (ENSSAUG00010001830)	ENSSAUG00010001800	ENSSAUG00010001757 #24	sntb1 (ENSSAUG00010001733) #25
Perciformes	ANCESTRAL SPECIES	3	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Lumpfish	MODERN SPECIES	7	gpatch3 (ENSCLMG00005009750)	nr0b2a (ENSCLMG00005009749)	ENSCLMG00005009748	tpbgl (ENSCLMG00005009747)	tmem222a (ENSCLMG00005009686)	wdtc1 (ENSCLMG00005009534)	CEP85 (ENSCLMG00005009527)	ENSCLMG00005009524	FEZ2 (ENSCLMG00005009521)	CLEC3B (ENSCLMG00005009520)	cdcp1a (ENSCLMG00005009519)	TMEM158 (ENSCLMG00005009517)	lars2 (ENSCLMG00005008393)	LIMD1 (ENSCLMG00005008373)	deptor (ENSCLMG00005008372) #20	COL14A1 (ENSCLMG00005008363) #22	mrpl13 (ENSCLMG00005008358) #23	dscc1 (ENSCLMG00005008357) #19	CPQ (ENSCLMG00005007559)	ENSCLMG00005007546	MRS2 (ENSCLMG00005007298)	scgn (ENSCLMG00005007294) #10	CCN3 (ENSCLMG00005007266) #16	ENSCLMG00005007260	sntb1 (ENSCLMG00005007258) #25	ENSCLMG00005007036 #24	ENSCLMG00005006966	ENSCLMG00005006960	ENSCLMG00005006698	ENSCLMG00005006340	ENSCLMG00005006328
Stickleback	MODERN SPECIES	19	nr0b2a (ENSGACG00000007198)	ENSGACG00000007195	ENSGACG00000007194	tpbgl (ENSGACG00000007188)	tmem222a (ENSGACG00000007178)	wdtc1 (ENSGACG00000007170)	CEP85 (ENSGACG00000007163)	ENSGACG00000007151	ENSGACG00000007141	CLEC3B (ENSGACG00000007136)	cdcp1a (ENSGACG00000007130)	lars2 (ENSGACG00000007099)	LIMD1 (ENSGACG00000007087)	deptor (ENSGACG00000007081) #20	ENSGACG00000007079	COL14A1 (ENSGACG00000007065) #22	mrpl13 (ENSGACG00000007061) #23	dscc1 (ENSGACG00000007056) #19	CPQ (ENSGACG00000007051)	ENSGACG00000007045	ENSGACG00000007040	ENSGACG00000007038	ENSGACG00000007035	ENSGACG00000007020	ENSGACG00000007004	ENSGACG00000006984	PTP4A3 (ENSGACG00000006970)	ENSGACG00000006955	ENSGACG00000006944 #24	sntb1 (ENSGACG00000006912) #25	CCN3 (ENSGACG00000006901) #16
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16	ENSGT00950000183108.a.c.f #10
Channel bull blenny	MODERN SPECIES	7	ARID1A (ENSCGOG00000008977)	gpn2 (ENSCGOG00000009026)	gpatch3 (ENSCGOG00000009043)	nr0b2a (ENSCGOG00000009050)	ENSCGOG00000009056	tpbgl (ENSCGOG00000009060)	tmem222a (ENSCGOG00000009078)	wdtc1 (ENSCGOG00000009093)	CEP85 (ENSCGOG00000009466)	ENSCGOG00000009483	FEZ2 (ENSCGOG00000009488)	CLEC3B (ENSCGOG00000009511)	lars2 (ENSCGOG00000009538)	LIMD1 (ENSCGOG00000010070)	deptor (ENSCGOG00000010119) #20	COL14A1 (ENSCGOG00000010147) #22	mrpl13 (ENSCGOG00000011451) #23	dscc1 (ENSCGOG00000011475) #19	CPQ (ENSCGOG00000011503)	ENSCGOG00000011638	MRS2 (ENSCGOG00000011642)	CLPTM1L (ENSCGOG00000011685)	ENSCGOG00000011777	ndrg1b (ENSCGOG00000014867)	PTP4A3 (ENSCGOG00000015000)	ENSCGOG00000015016	ENSCGOG00000015033 #24	sntb1 (ENSCGOG00000015039) #25	ENSCGOG00000015065	CCN3 (ENSCGOG00000015068) #16	scgn (ENSCGOG00000015157) #10
Pike perch	MODERN SPECIES	15	gpatch3 (ENSSLUG00000009185)	nr0b2a (ENSSLUG00000009161)	KDF1 (ENSSLUG00000009138)	tpbgl (ENSSLUG00000009132)	tmem222a (ENSSLUG00000009128)	wdtc1 (ENSSLUG00000009092)	ENSSLUG00000009063	ENSSLUG00000009051	ENSSLUG00000009046	FEZ2 (ENSSLUG00000009039)	CLEC3B (ENSSLUG00000009032)	TMEM158 (ENSSLUG00000009029)	lars2 (ENSSLUG00000006077)	LIMD1 (ENSSLUG00000005930)	deptor (ENSSLUG00000005894) #20	COL14A1 (ENSSLUG00000005831) #22	mrpl13 (ENSSLUG00000005825) #23	dscc1 (ENSSLUG00000005806) #19	CPQ (ENSSLUG00000005294)	ENSSLUG00000005217	MRS2 (ENSSLUG00000005198)	CLPTM1L (ENSSLUG00000005157)	ENSSLUG00000007804	ENSSLUG00000007405	PTP4A3 (ENSSLUG00000007370)	ZFAT (ENSSLUG00000007280)	ENSSLUG00000007216 #24	sntb1 (ENSSLUG00000007205) #25	ENSSLUG00000007203	ENSSLUG00000007196	CCN3 (ENSSLUG00000007191) #16
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Carangaria	ANCESTRAL SPECIES	1	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Turbot	MODERN SPECIES		ENSSMAG00000002067	nr0b2a (ENSSMAG00000002080)	ENSSMAG00000033964	tpbgl (ENSSMAG00000002097)	tmem222a (ENSSMAG00000002110)	wdtc1 (ENSSMAG00000002132)	ENSSMAG00000002177	ENSSMAG00000002239	ENSSMAG00000002284	CLEC3B (ENSSMAG00000002297)	cdcp1a (ENSSMAG00000002303)	TMEM158 (ENSSMAG00000026497)	lars2 (ENSSMAG00000002353)	LIMD1 (ENSSMAG00000002424)	deptor (ENSSMAG00000002445) #20	ENSSMAG00000002502 #22	mrpl13 (ENSSMAG00000002558) #23	ENSSMAG00000002581 #19	ENSSMAG00000002602	ENSSMAG00000002622	ENSSMAG00000002628	ENSSMAG00000035925	ENSSMAG00000002646	ENSSMAG00000002665	ENSSMAG00000002721	ENSSMAG00000003027	ENSSMAG00000003059	ENSSMAG00000003093	ENSSMAG00000003140 #24	ENSSMAG00000003162 #25	ENSSMAG00000003199
Tongue sole	MODERN SPECIES	4	gpatch3 (ENSCSEG00000005277)	nr0b2a (ENSCSEG00000005273)	ENSCSEG00000005272	tpbgl (ENSCSEG00000005271)	tmem222a (ENSCSEG00000005261)	wdtc1 (ENSCSEG00000005252)	CEP85 (ENSCSEG00000005242)	ENSCSEG00000005234	ENSCSEG00000005225	CLEC3B (ENSCSEG00000005231)	cdcp1a (ENSCSEG00000005216)	TMEM158 (ENSCSEG00000005214)	lars2 (ENSCSEG00000005202)	LIMD1 (ENSCSEG00000005191)	deptor (ENSCSEG00000005169) #20	COL14A1 (ENSCSEG00000005157) #22	ENSCSEG00000005153	sntb1 (ENSCSEG00000005142) #25	ENSCSEG00000005134 #24	ENSCSEG00000005115	ENSCSEG00000005099	ndrg1b (ENSCSEG00000005092)	ENSCSEG00000005078	ENSCSEG00000005074	CLPTM1L (ENSCSEG00000005062)	MRS2 (ENSCSEG00000005059)	ENSCSEG00000005055	CPQ (ENSCSEG00000005044)	dscc1 (ENSCSEG00000005030) #19	mrpl13 (ENSCSEG00000005024) #23	FHOD3 (ENSCSEG00000005007)
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Seriola	ANCESTRAL SPECIES	16	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Greater amberjack	MODERN SPECIES	75	gpatch3 (ENSSDUG00000017071)	nr0b2a (ENSSDUG00000017067)	ENSSDUG00000017048	tpbgl (ENSSDUG00000017042)	tmem222a (ENSSDUG00000017035)	wdtc1 (ENSSDUG00000016981)	CEP85 (ENSSDUG00000016947)	ENSSDUG00000016879	ENSSDUG00000016827	CLEC3B (ENSSDUG00000016813)	cdcp1a (ENSSDUG00000016773)	TMEM158 (ENSSDUG00000016762)	lars2 (ENSSDUG00000016697)	LIMD1 (ENSSDUG00000016680)	deptor (ENSSDUG00000016646) #20	COL14A1 (ENSSDUG00000016525) #22	mrpl13 (ENSSDUG00000016507) #23	dscc1 (ENSSDUG00000016477) #19	CPQ (ENSSDUG00000016423)	ENSSDUG00000016394	MRS2 (ENSSDUG00000016372)	CLPTM1L (ENSSDUG00000016354)	ENSSDUG00000016341	ENSSDUG00000016275	ndrg1b (ENSSDUG00000015947)	PTP4A3 (ENSSDUG00000015910)	ENSSDUG00000015868	ENSSDUG00000015832 #24	sntb1 (ENSSDUG00000015780) #25	ENSSDUG00000015769	CCN3 (ENSSDUG00000015746) #16
Yellowtail amberjack	MODERN SPECIES	2813																COL14A1 (ENSSLDG00000022438) #22	mrpl13 (ENSSLDG00000022405) #23	dscc1 (ENSSLDG00000022374) #19	CPQ (ENSSLDG00000022351)	ENSSLDG00000022328	MRS2 (ENSSLDG00000022317)	ENSSLDG00000022292	ENSSLDG00000022284	ENSSLDG00000022243	ndrg1b (ENSSLDG00000022225)	PTP4A3 (ENSSLDG00000022207)	ENSSLDG00000022185	ENSSLDG00000022154 #24	sntb1 (ENSSLDG00000022129) #25	ENSSLDG00000022116	CCN3 (ENSSLDG00000022098) #16
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010005924	tpbgl (ENSLCAG00010005921)	tmem222a (ENSLCAG00010005916)	wdtc1 (ENSLCAG00010005904)	CEP85 (ENSLCAG00010005896)	ENSLCAG00010005892	ENSLCAG00010005885	CLEC3B (ENSLCAG00010005878)	ENSLCAG00010005874	cdcp1a (ENSLCAG00010005869)	TMEM158 (ENSLCAG00010005866)	lars2 (ENSLCAG00010005379)	ENSLCAG00010005250	ENSLCAG00010005246	deptor (ENSLCAG00010005241) #20	COL14A1 (ENSLCAG00010004721) #22	mrpl13 (ENSLCAG00010004616) #23	dscc1 (ENSLCAG00010004610) #19	CPQ (ENSLCAG00010004593)	ENSLCAG00010004590	ENSLCAG00010004584	MRS2 (ENSLCAG00010004575)	CLPTM1L (ENSLCAG00010004569)	ENSLCAG00010004567	ENSLCAG00010003085	ENSLCAG00010002773	PTP4A3 (ENSLCAG00010002761)	ZFAT (ENSLCAG00010002738)	ENSLCAG00010002726 #24	sntb1 (ENSLCAG00010002724) #25	ENSLCAG00010002721
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Climbing perch	MODERN SPECIES	7	ENSATEG00000023759	nr0b2a (ENSATEG00000023764)	ENSATEG00000023767	tpbgl (ENSATEG00000023772)	tmem222a (ENSATEG00000023778)	wdtc1 (ENSATEG00000023785)	ENSATEG00000023798	ENSATEG00000023805	ENSATEG00000023812	CLEC3B (ENSATEG00000028357)	cdcp1a (ENSATEG00000023823)	TMEM158 (ENSATEG00000023829)	lars2 (ENSATEG00000023835)	ENSATEG00000030019	deptor (ENSATEG00000023870) #20	ENSATEG00000023876 #22	mrpl13 (ENSATEG00000028244) #23	ENSATEG00000023887 #19	ENSATEG00000023892	ENSATEG00000028035	ENSATEG00000023896	ENSATEG00000023901	ENSATEG00000023908	ENSATEG00000023925	ENSATEG00000023959	ENSATEG00000023965	ENSATEG00000023974	ENSATEG00000023980 #24	ENSATEG00000023994 #25	ENSATEG00000024001	ENSATEG00000024003 #16
Siamese fighting fish	MODERN SPECIES	7	gpatch3 (ENSBSLG00000022200)	nr0b2a (ENSBSLG00000022207)	KDF1 (ENSBSLG00000022210)	tpbgl (ENSBSLG00000022211)	tmem222a (ENSBSLG00000022218)	wdtc1 (ENSBSLG00000022227)	CEP85 (ENSBSLG00000022341)	ENSBSLG00000022408	ENSBSLG00000022435	CLEC3B (ENSBSLG00000022556)	ENSBSLG00000022563	cdcp1a (ENSBSLG00000022565)	lars2 (ENSBSLG00000022914)	LIMD1 (ENSBSLG00000023356)	deptor (ENSBSLG00000023466) #20	COL14A1 (ENSBSLG00000023534) #22	mrpl13 (ENSBSLG00000023852) #23	dscc1 (ENSBSLG00000023885) #19	CPQ (ENSBSLG00000023912)	ENSBSLG00000023957	MRS2 (ENSBSLG00000023966)	ENSBSLG00000023993	ENSBSLG00000024186	ndrg1b (ENSBSLG00000025549)	PTP4A3 (ENSBSLG00000025965)	ENSBSLG00000026018	ENSBSLG00000026082 #24	sntb1 (ENSBSLG00000014136) #25	ENSBSLG00000014147	CCN3 (ENSBSLG00000014184) #16	scgn (ENSBSLG00000014553) #10
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000023975	nr0b2a (ENSMAMG00000023976)	ENSMAMG00000023977	tpbgl (ENSMAMG00000023978)	tmem222a (ENSMAMG00000024611)	wdtc1 (ENSMAMG00000023980)	ENSMAMG00000023981	ENSMAMG00000023982	ENSMAMG00000023983	CLEC3B (ENSMAMG00000023985)	cdcp1a (ENSMAMG00000023984)	TMEM158 (ENSMAMG00000023986)	lars2 (ENSMAMG00000023987)	LIMD1 (ENSMAMG00000023988)	deptor (ENSMAMG00000023989) #20	ENSMAMG00000023990 #22	mrpl13 (ENSMAMG00000023991) #23	ENSMAMG00000023992 #19	ENSMAMG00000023994	ENSMAMG00000023995	ENSMAMG00000023996	ENSMAMG00000023997	ENSMAMG00000023998	ENSMAMG00000023999	ENSMAMG00000025894	ENSMAMG00000024001	ENSMAMG00000024002 #24	ENSMAMG00000024003 #25	ENSMAMG00000026078	ENSMAMG00000024005 #16	ENSMAMG00000024006 #10
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Aplocheiloidei	ANCESTRAL SPECIES	26																ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Mangrove rivulus	MODERN SPECIES	14																COL14A1 (ENSKMAG00000018028) #22	mrpl13 (ENSKMAG00000018091) #23	dscc1 (ENSKMAG00000018118) #19	CPQ (ENSKMAG00000018148)	ENSKMAG00000018172	MRS2 (ENSKMAG00000018186)	ENSKMAG00000018211	ENSKMAG00000018242	ENSKMAG00000018338	ndrg1b (ENSKMAG00000018710)	PTP4A3 (ENSKMAG00000018768)	ENSKMAG00000018808	sntb1 (ENSKMAG00000018846) #25	ENSKMAG00000018873	CCN3 (ENSKMAG00000018904) #16	scgn (ENSKMAG00000019038) #10
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015007959	TMEM65 (ENSNFUG00015007962)	MTSS1 (ENSNFUG00015008065) #9	ENSNFUG00015008760	Nfu_g_1_001734 (ENSNFUG00015006035) #15	si:ch211-93i7.4 (ENSNFUG00015006040) #14	TNFRSF11B (ENSNFUG00015006046) #13	ENSNFUG00015006051 #12	CARMIL1 (ENSNFUG00015006211) #11	scgn (ENSNFUG00015007466) #10	CCN3 (ENSNFUG00015007497) #16	ENSNFUG00015007502	SNTB1 (ENSNFUG00015007506) #25	ENSNFUG00015007519 #24	lyrm1 (ENSNFUG00015007553)	ENSNFUG00015007609 #22	MRPL13 (ENSNFUG00015008204) #23	dscc1 (ENSNFUG00015008217) #19	ENSNFUG00015008253	tmem222a (ENSNFUG00015008257)	tpbgl (ENSNFUG00015008265)	ENSNFUG00015008268	nr0b2a (ENSNFUG00015008271)	gpatch3 (ENSNFUG00015008274)	GPN2 (ENSNFUG00015008281)	ARID1A (ENSNFUG00015008314)	pigv (ENSNFUG00015008531)	zdhhc18a (ENSNFUG00015008535)	FAM46BA (ENSNFUG00015008545)	ENSNFUG00015008549	ENSNFUG00015008555
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b.a	ENSGT01040000240400.c.b.a.a.a.b.b
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667.j #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b.a	ENSGT01040000240400.c.b.a.a.a.b.b
Poecilia	ANCESTRAL SPECIES		ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667.j #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b.a	ENSGT01040000240400.c.b.a.a.a.b.b
NAME_6	ANCESTRAL SPECIES	197											ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667.j #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b.a	ENSGT01040000240400.c.b.a.a.a.b.b
Amazon molly	MODERN SPECIES	523										ENSPFOG00000011877	TMEM158 (ENSPFOG00000022083)	lars2 (ENSPFOG00000011593)	LIMD1 (ENSPFOG00000011498)	deptor (ENSPFOG00000011332) #20	deptor (ENSPFOG00000011294) #20	COL14A1 (ENSPFOG00000010698) #22	mrpl13 (ENSPFOG00000010630) #23	dscc1 (ENSPFOG00000010560) #19	CPQ (ENSPFOG00000010434)	ENSPFOG00000021703	ENSPFOG00000010425	MRS2 (ENSPFOG00000010268)	ENSPFOG00000010111	ENSPFOG00000010095	ENSPFOG00000010090	ndrg1b (ENSPFOG00000010083)	ENSPFOG00000010038	ENSPFOG00000009919	ENSPFOG00000009740 #24	sntb1 (ENSPFOG00000009607) #25	ENSPFOG00000024134
Sailfin molly	MODERN SPECIES	1169														ENSPLAG00000011660	deptor (ENSPLAG00000011668) #20	COL14A1 (ENSPLAG00000011907) #22
Guppy	MODERN SPECIES	446	gpatch3 (ENSPREG00000008873)	nr0b2a (ENSPREG00000008891)	ENSPREG00000008900	tpbgl (ENSPREG00000008925)	tmem222a (ENSPREG00000008949)	wdtc1 (ENSPREG00000008983)	CEP85 (ENSPREG00000009036)	ENSPREG00000009137	ENSPREG00000009238	CLEC3B (ENSPREG00000009257)	ENSPREG00000009288	TMEM158 (ENSPREG00000009299)	lars2 (ENSPREG00000009319)	LIMD1 (ENSPREG00000009359)	deptor (ENSPREG00000009382) #20	COL14A1 (ENSPREG00000009434) #22	mrpl13 (ENSPREG00000009510) #23	dscc1 (ENSPREG00000009531) #19	CPQ (ENSPREG00000009554)	ENSPREG00000009583	MRS2 (ENSPREG00000009590)	ENSPREG00000009608	ENSPREG00000009684	ENSPREG00000009701	ndrg1b (ENSPREG00000009752)	ENSPREG00000009772	ZFAT (ENSPREG00000009790)	ENSPREG00000009877 #24	sntb1 (ENSPREG00000009976) #25	ENSPREG00000009995	CCN3 (ENSPREG00000010039) #16
Platyfish	MODERN SPECIES	17	gpn2 (ENSXMAG00000010742)	gpatch3 (ENSXMAG00000010749)	nr0b2a (ENSXMAG00000010556)	ENSXMAG00000023100	tpbgl (ENSXMAG00000019082)	tmem222a (ENSXMAG00000028549)	wdtc1 (ENSXMAG00000010763)	CEP85 (ENSXMAG00000010776)	ENSXMAG00000023555	ENSXMAG00000010800	CLEC3B (ENSXMAG00000010802)	TMEM158 (ENSXMAG00000022005)	lars2 (ENSXMAG00000010803)	LIMD1 (ENSXMAG00000010818)	deptor (ENSXMAG00000010825) #20	COL14A1 (ENSXMAG00000010834) #22	mrpl13 (ENSXMAG00000010846) #23	dscc1 (ENSXMAG00000010847) #19	CPQ (ENSXMAG00000010857)	ENSXMAG00000022167	MRS2 (ENSXMAG00000010869)	ENSXMAG00000030035	ENSXMAG00000010909	ENSXMAG00000010911	ndrg1b (ENSXMAG00000010969)	ENSXMAG00000018281	ENSXMAG00000010993	ENSXMAG00000010999 #24	sntb1 (ENSXMAG00000011008) #25	ENSXMAG00000022539	ENSXMAG00000025094
NAME_4	ANCESTRAL SPECIES	86	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Mummichog	MODERN SPECIES	468										ENSFHEG00000001792	TMEM158 (ENSFHEG00000001795)	lars2 (ENSFHEG00000001812)	LIMD1 (ENSFHEG00000001824)	deptor (ENSFHEG00000001836) #20	ENSFHEG00000001839	COL14A1 (ENSFHEG00000001891) #22	mrpl13 (ENSFHEG00000001907) #23	dscc1 (ENSFHEG00000001923) #19	CPQ (ENSFHEG00000001941)	ENSFHEG00000001945
Sheepshead minnow	MODERN SPECIES	333	gpn2 (ENSCVAG00000020134)	gpatch3 (ENSCVAG00000000827)	nr0b2a (ENSCVAG00000020110)	KDF1 (ENSCVAG00000020102)	tpbgl (ENSCVAG00000020093)	tmem222a (ENSCVAG00000020041)	wdtc1 (ENSCVAG00000020036)	CEP85 (ENSCVAG00000019986)	ENSCVAG00000019975	ENSCVAG00000019948	CLEC3B (ENSCVAG00000019917)	TMEM158 (ENSCVAG00000019910)	lars2 (ENSCVAG00000019899)	LIMD1 (ENSCVAG00000019769)	deptor (ENSCVAG00000019760) #20	COL14A1 (ENSCVAG00000019722) #22	mrpl13 (ENSCVAG00000019608) #23	dscc1 (ENSCVAG00000019580) #19	CPQ (ENSCVAG00000019539)	ENSCVAG00000019505	MRS2 (ENSCVAG00000019496)	ENSCVAG00000019489	ENSCVAG00000019448	ENSCVAG00000019438	ndrg1b (ENSCVAG00000019353)	PTP4A3 (ENSCVAG00000019341)	ENSCVAG00000019277	ENSCVAG00000019256 #24	sntb1 (ENSCVAG00000019231) #25
Oryzias	ANCESTRAL SPECIES	2	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019.l	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000159963 #16	ENSGT00950000183108.a.c.f #10	ENSGT00940000155112.B.a #11
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019.l	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000159963 #16	ENSGT00950000183108.a.c.f #10	ENSGT00940000155112.B.a #11
Indian medaka	MODERN SPECIES	5	gpatch3 (ENSOMEG00000010991)	nr0b2a (ENSOMEG00000011004)	ENSOMEG00000011011	tpbgl (ENSOMEG00000011052)	tmem222a (ENSOMEG00000011094)	wdtc1 (ENSOMEG00000011235)	ENSOMEG00000011310	CEP85 (ENSOMEG00000011339)	ENSOMEG00000011378	ENSOMEG00000011391	CLEC3B (ENSOMEG00000011407)	TMEM158 (ENSOMEG00000011417)	lars2 (ENSOMEG00000011491)	LIMD1 (ENSOMEG00000011521)	deptor (ENSOMEG00000011556) #20	COL14A1 (ENSOMEG00000011696) #22	mrpl13 (ENSOMEG00000011732) #23	dscc1 (ENSOMEG00000011757) #19	ENSOMEG00000011783	ENSOMEG00000011802	MRS2 (ENSOMEG00000011853)	ENSOMEG00000011904	ENSOMEG00000012259	ndrg1b (ENSOMEG00000012420)	ENSOMEG00000012484	ENSOMEG00000012557	ENSOMEG00000012611 #24	sntb1 (ENSOMEG00000012675) #25	CCN3 (ENSOMEG00000012898) #16	scgn (ENSOMEG00000013000) #10	CARMIL1 (ENSOMEG00000013048) #11
Javanese ricefish	MODERN SPECIES	7	gpn2 (ENSOJAG00000018270)	gpatch3 (ENSOJAG00000018279)	nr0b2a (ENSOJAG00000018286)	ENSOJAG00000018298	tpbgl (ENSOJAG00000018305)	tmem222a (ENSOJAG00000018312)	wdtc1 (ENSOJAG00000018357)	CEP85 (ENSOJAG00000018845)	ENSOJAG00000018856	ENSOJAG00000018868	CLEC3B (ENSOJAG00000018912)	TMEM158 (ENSOJAG00000018976)	lars2 (ENSOJAG00000019013)	LIMD1 (ENSOJAG00000007396)	deptor (ENSOJAG00000007415) #20	COL14A1 (ENSOJAG00000007654) #22	mrpl13 (ENSOJAG00000009285) #23	dscc1 (ENSOJAG00000009392) #19	CPQ (ENSOJAG00000009529)	ENSOJAG00000009966	MRS2 (ENSOJAG00000009982)	ENSOJAG00000010177	ENSOJAG00000010756	ndrg1b (ENSOJAG00000015527)	ENSOJAG00000015809	ENSOJAG00000015824	ENSOJAG00000015971 #24	sntb1 (ENSOJAG00000015985) #25	CCN3 (ENSOJAG00000016093) #16	scgn (ENSOJAG00000016099) #10	CARMIL1 (ENSOJAG00000016246) #11
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019.l	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000159963 #16	ENSGT00950000183108.a.c.f #10	ENSGT00940000155112.B.a #11
Chinese medaka	MODERN SPECIES	205														deptor (ENSOSIG00000022887) #20	ENSOSIG00000022884	COL14A1 (ENSOSIG00000022839) #22	mrpl13 (ENSOSIG00000022757) #23	dscc1 (ENSOSIG00000022753) #19	CPQ (ENSOSIG00000022731)	ENSOSIG00000022720	MRS2 (ENSOSIG00000022719)	CLPTM1L (ENSOSIG00000022706)	ENSOSIG00000022432	ndrg1b (ENSOSIG00000022331)	ENSOSIG00000022306	ENSOSIG00000022299	ENSOSIG00000022296 #24	ENSOSIG00000022290	sntb1 (ENSOSIG00000022289) #25	CARMIL1 (ENSOSIG00000022255) #11
Japanese Medaka HdrR	MODERN SPECIES	7	gpn2 (ENSORLG00000004425)	gpatch3 (ENSORLG00000004435)	ENSORLG00000025251	nr0b2a (ENSORLG00000004442)	tpbgl (ENSORLG00000004455)	tmem222a (ENSORLG00000004480)	wdtc1 (ENSORLG00000004505)	CEP85 (ENSORLG00000004532)	ENSORLG00000004544	CLEC3B (ENSORLG00000028179)	TMEM158 (ENSORLG00000004555)	ENSORLG00000023875	lars2 (ENSORLG00000004574)	LIMD1 (ENSORLG00000004582)	deptor (ENSORLG00000004604) #20	ENSORLG00000004631 #22	mrpl13 (ENSORLG00000004647) #23	dscc1 (ENSORLG00000004660) #19	CPQ (ENSORLG00000004684)	ENSORLG00000024891	MRS2 (ENSORLG00000004699)	CLPTM1L (ENSORLG00000004721)	ENSORLG00000004751	ENSORLG00000004785	ENSORLG00000004793	ENSORLG00000004805	ENSORLG00000004821 #24	sntb1 (ENSORLG00000022473) #25	ENSORLG00000025100	ENSORLG00000025758	CCN3 (ENSORLG00000029702) #16
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b.c	ENSGT00390000010209.c.b.d	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Nile tilapia	MODERN SPECIES	2	ENSONIG00000006773	tpbgl (ENSONIG00000006775)	tmem222a (ENSONIG00000006776)	wdtc1 (ENSONIG00000006780)	CEP85 (ENSONIG00000006789)	ENSONIG00000006793	ENSONIG00000006796	CLEC3B (ENSONIG00000028365)	cdcp1a (ENSONIG00000006800)	ENSONIG00000042157	ENSONIG00000030470	TMEM158 (ENSONIG00000041619)	lars2 (ENSONIG00000006802)	LIMD1 (ENSONIG00000035860)	deptor (ENSONIG00000006812) #20	COL14A1 (ENSONIG00000006815) #22	mrpl13 (ENSONIG00000037652) #23	dscc1 (ENSONIG00000006827) #19	CPQ (ENSONIG00000006829)	ENSONIG00000032537	MRS2 (ENSONIG00000006832)	ENSONIG00000006834	ENSONIG00000039329	ENSONIG00000006838	ndrg1b (ENSONIG00000006850)	PTP4A3 (ENSONIG00000006856)	ENSONIG00000007011	ENSONIG00000007013 #24	sntb1 (ENSONIG00000007016) #25	ENSONIG00000007019	CCN3 (ENSONIG00000007020) #16
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b.c	ENSGT00390000010209.c.b.d	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b.c	ENSGT00390000010209.c.b.d	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Burton s mouthbrooder	MODERN SPECIES	446											TMEM158 (ENSHBUG00000014093)	lars2 (ENSHBUG00000014070)	LIMD1 (ENSHBUG00000013922)	deptor (ENSHBUG00000013888) #20	ENSHBUG00000013873	COL14A1 (ENSHBUG00000013799) #22	mrpl13 (ENSHBUG00000012259) #23	dscc1 (ENSHBUG00000012228) #19	CPQ (ENSHBUG00000012198)	ENSHBUG00000012167	MRS2 (ENSHBUG00000012163)	ENSHBUG00000012151	ENSHBUG00000012140	ENSHBUG00000012132	ndrg1b (ENSHBUG00000012032)	PTP4A3 (ENSHBUG00000011967)	ENSHBUG00000011937	ENSHBUG00000011919 #24	sntb1 (ENSHBUG00000011900) #25	ENSHBUG00000011853	CCN3 (ENSHBUG00000011844) #16
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b.c	ENSGT00390000010209.c.b.d	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Haplochromini_B	ANCESTRAL SPECIES	50	ENSGT00390000016565.g.c	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b.c	ENSGT00390000010209.c.b.d.a	ENSGT00390000010209.c.b.d.b	ENSGT00390000009719	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000009988	ENSGT00530000063461.A.a	ENSGT00690000103986	ENSGT00940000155113.a.b	ENSGT00950000182872.f.a.b.o	ENSGT00940000159581.b.a	ENSGT00940000156658	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT01040000240400.c.b.a.a.a.b	ENSGT00940000159963 #16
Eastern happy	MODERN SPECIES	2	nr0b2a (ENSACLG00000012820)	ENSACLG00000012826	tpbgl (ENSACLG00000012831)	tmem222a (ENSACLG00000012836)	wdtc1 (ENSACLG00000012911)	CEP85 (ENSACLG00000012930)	ENSACLG00000012962	ENSACLG00000012980	CLEC3B (ENSACLG00000013006)	cdcp1a (ENSACLG00000013008)	ENSACLG00000013023	TMEM158 (ENSACLG00000013026)	lars2 (ENSACLG00000013037)	LIMD1 (ENSACLG00000013073)	deptor (ENSACLG00000013080) #20	COL14A1 (ENSACLG00000013132) #22	mrpl13 (ENSACLG00000013200) #23	dscc1 (ENSACLG00000013216) #19	CPQ (ENSACLG00000013235)	ENSACLG00000013261	MRS2 (ENSACLG00000013272)	ENSACLG00000013288	ENSACLG00000013307	ENSACLG00000013321	ENSACLG00000013325	ndrg1b (ENSACLG00000013370)	PTP4A3 (ENSACLG00000013391)	ENSACLG00000013397	ENSACLG00000013413 #24	sntb1 (ENSACLG00000013426) #25	ENSACLG00000013437
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005025475	znf1035 (ENSMZEG00005025476)	ENSMZEG00005025477	prss1 (ENSMZEG00005025478)	ENSMZEG00005025479	zgc:66448 (ENSMZEG00005025481)	ENSMZEG00005025483	ENSMZEG00005025484	ENSMZEG00005025486	ENSMZEG00005025487	si:ch211-79k12.2 (ENSMZEG00005025490)	ENSMZEG00005025488	ENSMZEG00005025491	ENSMZEG00005025493	ptprub (ENSMZEG00005025494)	COL14A1 (ENSMZEG00005025495) #22	ENSMZEG00005025497	ENSMZEG00005025498	mrpl13 (ENSMZEG00005025500) #23	dscc1 (ENSMZEG00005025503) #19	CPQ (ENSMZEG00005025505)	ENSMZEG00005025508	MRS2 (ENSMZEG00005025510)	ENSMZEG00005025513	ENSMZEG00005025515	ENSMZEG00005025538	ENSMZEG00005025519	ndrg1b (ENSMZEG00005025541)	PTP4A3 (ENSMZEG00005025545)	ENSMZEG00005025547	ENSMZEG00005025550 #24
P. nyererei	MODERN SPECIES	439	gpn2 (ENSPNYG00000005186)	gpatch3 (ENSPNYG00000005172)	nr0b2a (ENSPNYG00000005164)	tpbgl (ENSPNYG00000005135)	tmem222a (ENSPNYG00000005103)	wdtc1 (ENSPNYG00000005049)	CEP85 (ENSPNYG00000005034)	ENSPNYG00000005002	ENSPNYG00000004967	CLEC3B (ENSPNYG00000004958)	cdcp1a (ENSPNYG00000004940)	TMEM158 (ENSPNYG00000004927)	lars2 (ENSPNYG00000004846)	LIMD1 (ENSPNYG00000004825)	deptor (ENSPNYG00000004816) #20	COL14A1 (ENSPNYG00000004711) #22	mrpl13 (ENSPNYG00000004669) #23	dscc1 (ENSPNYG00000004640) #19	CPQ (ENSPNYG00000004611)	ENSPNYG00000004600	MRS2 (ENSPNYG00000004586)	ENSPNYG00000004453	ENSPNYG00000004426	ENSPNYG00000004359	ENSPNYG00000004202	ndrg1b (ENSPNYG00000003846)	PTP4A3 (ENSPNYG00000003759)	ENSPNYG00000003441	ENSPNYG00000003339 #24	sntb1 (ENSPNYG00000003327) #25	ENSPNYG00000003314
Lyretail cichlid	MODERN SPECIES	331	gpn2 (ENSNBRG00000000384)	gpatch3 (ENSNBRG00000000365)	nr0b2a (ENSNBRG00000022432)	ENSNBRG00000022395	tpbgl (ENSNBRG00000022364)	tmem222a (ENSNBRG00000022351)	wdtc1 (ENSNBRG00000022328)	CEP85 (ENSNBRG00000022276)	ENSNBRG00000022249	ENSNBRG00000022232	cdcp1a (ENSNBRG00000022216)	TMEM158 (ENSNBRG00000022207)	lars2 (ENSNBRG00000022165)	LIMD1 (ENSNBRG00000022129)	deptor (ENSNBRG00000022094) #20	COL14A1 (ENSNBRG00000022015) #22	mrpl13 (ENSNBRG00000021965) #23	dscc1 (ENSNBRG00000021943) #19	CPQ (ENSNBRG00000021915)	ENSNBRG00000021901	MRS2 (ENSNBRG00000021882)	ENSNBRG00000021124	ENSNBRG00000020979	ENSNBRG00000020964	ENSNBRG00000020942	ndrg1b (ENSNBRG00000020757)	PTP4A3 (ENSNBRG00000020695)	ENSNBRG00000020616	ENSNBRG00000020565 #24	sntb1 (ENSNBRG00000020529) #25	ENSNBRG00000020519
Midas cichlid	MODERN SPECIES	1213	gpn2 (ENSACIG00000010469)	nr0b2a (ENSACIG00000010554)	ENSACIG00000010575	tpbgl (ENSACIG00000010582)	tmem222a (ENSACIG00000010606)	wdtc1 (ENSACIG00000010658)	CEP85 (ENSACIG00000010703)	ENSACIG00000010779	ENSACIG00000010812	CLEC3B (ENSACIG00000010837)	cdcp1a (ENSACIG00000010859)	TMEM158 (ENSACIG00000010880)	lars2 (ENSACIG00000010901)	LIMD1 (ENSACIG00000010949)	deptor (ENSACIG00000011002) #20	COL14A1 (ENSACIG00000011027) #22	mrpl13 (ENSACIG00000011101) #23	dscc1 (ENSACIG00000011121) #19	CPQ (ENSACIG00000011136)	ENSACIG00000011156	MRS2 (ENSACIG00000011167)	ENSACIG00000011184	ENSACIG00000011214	ENSACIG00000011223	ndrg1b (ENSACIG00000011308)	PTP4A3 (ENSACIG00000011864)	ZFAT (ENSACIG00000011878)	ENSACIG00000012032 #24	sntb1 (ENSACIG00000012120) #25	ENSACIG00000012146	CCN3 (ENSACIG00000012172) #16
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00940000178119	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT00940000157046.C	ENSGT00550000075103	ENSGT00940000163876	ENSGT00950000183116.b.a.b.b	ENSGT00940000157045.a	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909	ENSGT00510000048725	ENSGT00940000160525
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT00940000157046.C	ENSGT00550000075103	ENSGT00940000163876	ENSGT00950000183116.b.a.b.b	ENSGT00940000157045.a	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909	ENSGT00510000048725	ENSGT00940000160525
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b	ENSGT00390000017627.a.a.b	ENSGT00950000183186.B.b.c	ENSGT00390000010209.c.b	ENSGT00390000015114	ENSGT00940000159019	ENSGT00520000055667 #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000017400 #19	ENSGT00390000018110	ENSGT00940000157222.b	ENSGT00390000003209	ENSGT01100000263520.a.a.b.a.b	ENSGT00550000075103	ENSGT00940000163876	ENSGT00940000157045.a	ENSGT00950000183116.b.a.b.b	ENSGT00940000174712	ENSGT01080000257333.E	ENSGT01030000234909	ENSGT00510000048725	ENSGT00940000160525
Clown anemonefish	MODERN SPECIES	606																COL14A1 (ENSAOCG00000018333) #22	paqr7b (ENSAOCG00000018342)	ENSAOCG00000018369	SERINC2 (ENSAOCG00000018403)	HIVEP3 (ENSAOCG00000018454)	ENSAOCG00000018468	ENSAOCG00000018487	phactr4b (ENSAOCG00000001332)	rcc1 (ENSAOCG00000018616)	oprd1b (ENSAOCG00000018631)	tcea3 (ENSAOCG00000018665)	tent5ba (ENSAOCG00000018686)	zdhhc18a (ENSAOCG00000018745)
Orange clownfish	MODERN SPECIES	21	gpn2 (ENSAPEG00000018912)	gpatch3 (ENSAPEG00000018926)	nr0b2a (ENSAPEG00000018934)	KDF1 (ENSAPEG00000018942)	tpbgl (ENSAPEG00000018953)	tmem222a (ENSAPEG00000018960)	wdtc1 (ENSAPEG00000019007)	CEP85 (ENSAPEG00000019107)	ENSAPEG00000019122	FEZ2 (ENSAPEG00000019155)	CLEC3B (ENSAPEG00000019207)	cdcp1a (ENSAPEG00000019254)	lars2 (ENSAPEG00000019312)	LIMD1 (ENSAPEG00000019388)	deptor (ENSAPEG00000019438) #20	COL14A1 (ENSAPEG00000019501) #22	mrpl13 (ENSAPEG00000019583) #23	dscc1 (ENSAPEG00000019612) #19	CPQ (ENSAPEG00000019655)	ENSAPEG00000019705	rpp25l (ENSAPEG00000019714)	tmem116 (ENSAPEG00000019727)	ENSAPEG00000019755	mrps12 (ENSAPEG00000019785)	zgc:153896 (ENSAPEG00000019798)	ENSAPEG00000019835	ENSAPEG00000019932	ENSAPEG00000019997	ENSAPEG00000020009	ENSAPEG00000020029	ENSAPEG00000020050
Spiny chromis	MODERN SPECIES	185												cdcp1a (ENSAPOG00000004677)	lars2 (ENSAPOG00000004760)	LIMD1 (ENSAPOG00000004799)	deptor (ENSAPOG00000004815) #20	COL14A1 (ENSAPOG00000004866) #22	mrpl13 (ENSAPOG00000004881) #23	dscc1 (ENSAPOG00000004927) #19	CPQ (ENSAPOG00000004950)	ENSAPOG00000004960	tmem116 (ENSAPOG00000004988)	ENSAPOG00000004997	ENSAPOG00000005016	ENSAPOG00000005023	mrps12 (ENSAPOG00000005047)	zgc:153896 (ENSAPOG00000005062)	ENSAPOG00000005092	RPL35 (ENSAPOG00000005108)	ENSAPOG00000005188	ENSAPOG00000005210	ENSAPOG00000005221
Bicolor damselfish	MODERN SPECIES	1018												lars2 (ENSSPAG00000022504)	ENSSPAG00000022518	ENSSPAG00000022528	deptor (ENSSPAG00000022529) #20	COL14A1 (ENSSPAG00000022531) #22
Tiger tail seahorse	MODERN SPECIES	208	ENSHCOG00000011612	ENSHCOG00000011623	ndrg1b (ENSHCOG00000011633)	ENSHCOG00000011686	ENSHCOG00000011697	CLPTM1L (ENSHCOG00000000747)	ENSHCOG00000011769	MRS2 (ENSHCOG00000011796)	ENSHCOG00000011808	ENSHCOG00000011825	CLEC3B (ENSHCOG00000011832)	cdcp1a (ENSHCOG00000011848)	lars2 (ENSHCOG00000011897)	LIMD1 (ENSHCOG00000011905)	deptor (ENSHCOG00000011939) #20	COL14A1 (ENSHCOG00000012016) #22	mrpl13 (ENSHCOG00000012037) #23	dscc1 (ENSHCOG00000012057) #19	CPQ (ENSHCOG00000012071)	ENSHCOG00000012084	ANKRD28 (ENSHCOG00000012141)	hdac9b (ENSHCOG00000012189)	twist1b (ENSHCOG00000012208)	macc1 (ENSHCOG00000012219)	sp8b (ENSHCOG00000012237)	DNAH11 (ENSHCOG00000012354)	ENSHCOG00000012394	ENSHCOG00000012412	slc6a19b (ENSHCOG00000012438)	ENSHCOG00000012447	ENSHCOG00000012463
Pinecone sodierfish	MODERN SPECIES	7	ARID1A (ENSMMDG00005014527)	gpn2 (ENSMMDG00005014502)	nr0b2a (ENSMMDG00005014497)	tpbgl (ENSMMDG00005014485)	tmem222a (ENSMMDG00005014430)	wdtc1 (ENSMMDG00005014107)	CEP85 (ENSMMDG00005014101)	ENSMMDG00005014099	ENSMMDG00005014097	ENSMMDG00005014095	CLEC3B (ENSMMDG00005014092)	cdcp1a (ENSMMDG00005014089)	lars2 (ENSMMDG00005010819)	LIMD1 (ENSMMDG00005010776)	deptor (ENSMMDG00005010773) #20	ENSMMDG00005010769 #22	ENSMMDG00005010764 #21	mrpl13 (ENSMMDG00005010739) #23	dscc1 (ENSMMDG00005010728) #19	CPQ (ENSMMDG00005010507)	ENSMMDG00005010496	MRS2 (ENSMMDG00005010421)	ENSMMDG00005010419	ENSMMDG00005010416	ttk (ENSMMDG00005010396)	bckdhb (ENSMMDG00005009944)	TENT5A (ENSMMDG00005009936)	IBTK (ENSMMDG00005009868)	tpbgb (ENSMMDG00005009852)	ube3d (ENSMMDG00005009851)	DOP1A (ENSMMDG00005008569)
Cod	MODERN SPECIES	2	ENSGMOG00000009582	mrpl32 (ENSGMOG00000030428)	ENSGMOG00000009564	ATAD2 (ENSGMOG00000009521) #33	ENSGMOG00000030641	ZHX1 (ENSGMOG00000033176) #32	C8orf76 (ENSGMOG00000009500) #31	FAM83A (ENSGMOG00000029860) #30	DERL1 (ENSGMOG00000009468) #28	TBC1D31 (ENSGMOG00000009479) #29	has2 (ENSGMOG00000002384) #26	SNTB1 (ENSGMOG00000003152) #25	MTBP (ENSGMOG00000012284) #24	deptor (ENSGMOG00000013707) #20	ENSGMOG00000035080	ENSGMOG00000009772 #22	mrpl13 (ENSGMOG00000004838) #23	ENSGMOG00000004821 #19	ENSGMOG00000007569 ##17	ENSGMOG00000007551 #18	ENSGMOG00000007490 #16	ENSGMOG00000030062	ENSGMOG00000005887	ENSGMOG00000002926	ENSGMOG00000023237	ENSGMOG00000031859	ENSGMOG00000031939	ENSGMOG00000037163	mios (ENSGMOG00000006523)	ENSGMOG00000006579	septin7b (ENSGMOG00000006606)
Osteoglossiformes	ANCESTRAL SPECIES	20			ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.a #9	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.b.a #12	ENSGT00940000155167.b.b.c #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A.n #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.c #20	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a #33	ENSGT00550000074870	ENSGT00390000014996	ENSGT00390000008818	ENSGT00390000012014.A	ENSGT00940000158819.a	ENSGT00390000011759
Asian bonytongue	MODERN SPECIES	9	mboat1 (ENSSFOG00015025225)	TMEM65 (ENSSFOG00015033091)	ndufb9 (ENSSFOG00015027706) #8	MTSS1 (ENSSFOG00015004132) #9	scgn (ENSSFOG00015004218) #10	CARMIL1 (ENSSFOG00015004303) #11	ENSSFOG00015004556 #12	TNFRSF11B (ENSSFOG00015004616) #13	si:ch211-93i7.4 (ENSSFOG00015004621) #14	mal2 (ENSSFOG00015004637) #15	CCN3 (ENSSFOG00015004662) #16	ENPP2 (ENSSFOG00015004691) #17	taf2 (ENSSFOG00015004791) #18	dscc1 (ENSSFOG00015004911) #19	deptor (ENSSFOG00015004956) #20	COL14A1 (ENSSFOG00015005012) #22	mrpl13 (ENSSFOG00015005149) #23	MTBP (ENSSFOG00015005181) #24	sntb1 (ENSSFOG00015005250) #25	has2 (ENSSFOG00015005287) #26	ENSSFOG00015005317	TBC1D31 (ENSSFOG00015005517) #29	FAM83A (ENSSFOG00015031348) #30	zgc:101716 (ENSSFOG00015024822) #31	ZHX1 (ENSSFOG00015005559) #32	ATAD2 (ENSSFOG00015005584) #33	PSMA2 (ENSSFOG00015005685)	mrpl32 (ENSSFOG00015005707)	ccdc127a (ENSSFOG00015005719)	ENSSFOG00015026959	rnf144b (ENSSFOG00015005734)
P. kingsleyae	MODERN SPECIES	1	ndufb9 (ENSPKIG00000019952) #8	MTSS1 (ENSPKIG00000019920) #9	scgn (ENSPKIG00000019887) #10	CARMIL1 (ENSPKIG00000019813) #11	ENSPKIG00000019782	ENSPKIG00000019750	ENSPKIG00000019723 #12	si:ch211-93i7.4 (ENSPKIG00000019699) #14	mal2 (ENSPKIG00000019681) #15	ENSPKIG00000019637 #13	CCN3 (ENSPKIG00000019464) #16	ENPP2 (ENSPKIG00000019314) #17	taf2 (ENSPKIG00000019134) #18	dscc1 (ENSPKIG00000019054) #19	deptor (ENSPKIG00000019001) #20	COL14A1 (ENSPKIG00000018918) #22	mrpl13 (ENSPKIG00000018874) #23	MTBP (ENSPKIG00000018833) #24	sntb1 (ENSPKIG00000018798) #25	has2 (ENSPKIG00000018776) #26	ENSPKIG00000018765	zhx2a (ENSPKIG00000018756) #27	TBC1D31 (ENSPKIG00000018687) #29	FAM83A (ENSPKIG00000018626) #30	zgc:101716 (ENSPKIG00000018559) #31	ZHX1 (ENSPKIG00000018530) #32	ENSPKIG00000018507	ENSPKIG00000018483	CCR8 (ENSPKIG00000018468)	ENSPKIG00000018447	PSMA2 (ENSPKIG00000018431)
Neopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156272	ENSGT00960000187692 #7	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a #9	ENSGT00950000183108.a #10	ENSGT00940000155112.B #11	ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.m #21	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33
Spotted gar	MODERN SPECIES	649	tatdn1 (ENSLOCG00000009012)	ndufb9 (ENSLOCG00000009028) #8	MTSS1 (ENSLOCG00000009035) #9	scgn (ENSLOCG00000009052) #10	CARMIL1 (ENSLOCG00000009062) #11	ENSLOCG00000009079 #12	TNFRSF11B (ENSLOCG00000009086) #13	si:ch211-93i7.4 (ENSLOCG00000009099) #14	mal2 (ENSLOCG00000009108) #15	CCN3 (ENSLOCG00000009114) #16	ENSLOCG00000009125	ENPP2 (ENSLOCG00000009138) #17	taf2 (ENSLOCG00000009156) #18	dscc1 (ENSLOCG00000009176) #19	deptor (ENSLOCG00000009183) #20	COL14A1 (ENSLOCG00000009194) #21	mrpl13 (ENSLOCG00000009210) #23	MTBP (ENSLOCG00000009214) #24	sntb1 (ENSLOCG00000009223) #25	has2 (ENSLOCG00000009236) #26	zhx2a (ENSLOCG00000018339) #27	derl1 (ENSLOCG00000009243) #28	TBC1D31 (ENSLOCG00000009250) #29	FAM83A (ENSLOCG00000009259) #30	zgc:101716 (ENSLOCG00000009268) #31	ZHX1 (ENSLOCG00000009278) #32	ENSLOCG00000009291	psma2b (ENSLOCG00000009306)	ENSLOCG00000009318	ENSLOCG00000009326	ENSLOCG00000009333
Osteoglossocephalai	ANCESTRAL SPECIES	44	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183108.a.c #10	ENSGT00940000155112.B.a #11	ENSGT00940000155167.b.a.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F.m #21	ENSGT00940000153769.F.n #22	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b.c #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a.b #32	ENSGT00550000074694.a #33	ENSGT00550000074870	ENSGT00390000014996	ENSGT00940000155682.h
Clupeocephala	ANCESTRAL SPECIES	374						ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27
Otomorpha	ANCESTRAL SPECIES	430						ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27
Clupeiformes	ANCESTRAL SPECIES	15	ENSGT00560000077232.A.b	ENSGT00940000156904.a.a	ENSGT00940000164565	ENSGT00940000160991.a	ENSGT00390000009448	ENSGT00940000159200	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00940000155187.B	ENSGT00390000008818	ENSGT00910000144277	ENSGT00940000159208.A	ENSGT00940000159762	ENSGT00940000160668	ENSGT00940000153385.b.a.b.fd.a	ENSGT00940000158729	ENSGT00940000163648.b	ENSGT00390000008551	ENSGT00390000011115	ENSGT00940000164552	ENSGT00530000063426.b.a	ENSGT00940000154798.b
Denticle herring	DUPLICATION
Denticle herring	MODERN SPECIES	111	psmb13a (ENSDCDG00000011409)	psmb12 (ENSDCDG00000011455)	tap2a (ENSDCDG00000011492)	hnrnpr (ENSDCDG00000006167)	dnajc8 (ENSDCDG00000007630)	tmem65 (ENSDCDG00000007639)	rnf139 (ENSDCDG00000007641)	tatdn1 (ENSDCDG00000007650)	ndufb9 (ENSDCDG00000007660) #8	MTSS1 (ENSDCDG00000007678) #9	SCGN (ENSDCDG00000007750) #10	ENSDCDG00000008091 #11	ENSDCDG00000013383 #12	ENSDCDG00000013470	ENPP2 (ENSDCDG00000014497) #17	COL14A1 (ENSDCDG00000019653) #21	ENSDCDG00000021880 #27	oxr1b (ENSDCDG00000021947)	ccdc127b (ENSDCDG00000026003)	sdha (ENSDCDG00000026009)	ENSDCDG00000026015	ENSDCDG00000026017	ENSDCDG00000026019	ENSDCDG00000026022	ENSDCDG00000026023	ints3 (ENSDCDG00000026029)	npr1a (ENSDCDG00000026088)	mylipa (ENSDCDG00000028204)	dtnbp1b (ENSDCDG00000028206)	jarid2b (ENSDCDG00000028217)
Denticle herring	MODERN SPECIES	12	psmb12 (ENSDCDG00000014568)	psmb9a (ENSDCDG00000014553)	tap2a (ENSDCDG00000014473)	hnrnpr (ENSDCDG00000014347)	dnajc8 (ENSDCDG00000013810)	tmem65 (ENSDCDG00000013806)	rnf139 (ENSDCDG00000013804)	tatdn1 (ENSDCDG00000013258)	ndufb9 (ENSDCDG00000013244) #8	MTSS1 (ENSDCDG00000013094) #9	SCGN (ENSDCDG00000013013) #10	ENSDCDG00000006936 #11	ENSDCDG00000005732 #12	ENSDCDG00000031735	ENPP2 (ENSDCDG00000029486) #17	ENSDCDG00000029411 #21	pard6gb (ENSDCDG00000029408)	bloc1s4 (ENSDCDG00000029407)	nutf2l (ENSDCDG00000029405)	adnp2b (ENSDCDG00000029404)	ENSDCDG00000029402	ENSDCDG00000029401	neu1 (ENSDCDG00000029399)	fuca1.2 (ENSDCDG00000029397)	zbtb8b (ENSDCDG00000029396)	heyl (ENSDCDG00000029395)	ENSDCDG00000029394	zgc:91944 (ENSDCDG00000029390)	ENSDCDG00000029388	ENSDCDG00000029383	tmem54b (ENSDCDG00000029370)
Atlantic herring	MODERN SPECIES	10	psmb9a (ENSCHAG00000024300)	psmb8a (ENSCHAG00000024290)	tap2a (ENSCHAG00000024184)	hnrnpr (ENSCHAG00000024130)	dnajc8 (ENSCHAG00000023776)	tmem65 (ENSCHAG00000023740)	rnf139 (ENSCHAG00000023733)	tatdn1 (ENSCHAG00000023668)	ndufb9 (ENSCHAG00000023662) #8	MTSS1 (ENSCHAG00000023510) #9	SCGN (ENSCHAG00000023494) #10	ENSCHAG00000022303 #11	ENSCHAG00000022230 #12	ENSCHAG00000020642	ENPP2 (ENSCHAG00000016944) #17	COL14A1 (ENSCHAG00000015921) #21	ZHX2 (ENSCHAG00000015899) #27	oxr1b (ENSCHAG00000014759)	ccdc127b (ENSCHAG00000014709)	ccdc127b (ENSCHAG00000014681)	ENSCHAG00000014639	ccdc127b (ENSCHAG00000014626)	sdha (ENSCHAG00000013358)	rxrba (ENSCHAG00000012452)	ENSCHAG00000012417	col11a2 (ENSCHAG00000011880)	hsd17b8 (ENSCHAG00000011805)	brd2a (ENSCHAG00000011771)	ago4 (ENSCHAG00000005849)	ENSCHAG00000005657	c19h1orf109 (ENSCHAG00000005642)
Otophysi	ANCESTRAL SPECIES	297						ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.d.d	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b
Cyprinoidei	ANCESTRAL SPECIES	252																ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.d.d	ENSGT00940000157432.A
Cyprininae	ANCESTRAL SPECIES	821																ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d.a #27	ENSGT00940000155778.A #17	ENSGT00940000156034.b	ENSGT00940000155167.b.a.b.h.b #12	ENSGT00940000156272	ENSGT00940000158932.i	ENSGT00390000017802.c.c
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	457									ENSGT00980000199494	ENSGT01090000260070.C.b	ENSGT00940000154450.tc	ENSGT00940000156338.b	ENSGT00390000014274	ENSGT00940000157751.q.b	ENSGT00950000182893.a.a.a.b.d.b #27	ENSGT00940000153769.F.m.c #21	ENSGT00950000182893.a.a.a.b.d.a #27	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.d.d.a.b	ENSGT00940000155778.A #17	ENSGT00940000156034.b	ENSGT00940000155167.b.a.b.h.b #12	ENSGT00940000156272	ENSGT00940000158932.i	ENSGT00390000017802.c.c
Common carp reference	MODERN SPECIES	31											gja9b (ENSCCRG00000075684)	srsf10b (ENSCCRG00000056509)	slc9a1b (ENSCCRG00000034926)	ENSCCRG00000067313	ENSCCRG00000074174	ENSCCRG00000057177 #21	ENSCCRG00000069481	ENSCCRG00000072658 #27	dnajc8 (ENSCCRG00000015892)	hnrnpr (ENSCCRG00000015930)	atp5if1a (ENSCCRG00000074826)	ENSCCRG00000015798	ENSCCRG00000069466	ENSCCRG00000023891 #17	ENSCCRG00000031775	ENSCCRG00000065053 #12	tatdn1 (ENSCCRG00000059323)	rnf139 (ENSCCRG00000067911)	tmem65 (ENSCCRG00000075047)	ENSCCRG00000070019	scn1bb (ENSCCRG00000081651)
Golden-line barbel	MODERN SPECIES	1566															KDM1B (ENSSGRG00000016603)	ENSSGRG00000016639 #21	ZHX2 (ENSSGRG00000016654) #27	ENSSGRG00000016657	hnrnpr (ENSSGRG00000016687)	atp5if1a (ENSSGRG00000017086)	ADGRB1 (ENSSGRG00000017088)
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000153769.F.m.d #21
Common carp reference	MODERN SPECIES	12												ENSCCRG00000079994	ENSCCRG00000064375	ENSCCRG00000070304	ENSCCRG00000078776	ENSCCRG00000028585 #21	ENSCCRG00000063161	ENSCCRG00000026876 #27	dnajc8 (ENSCCRG00000073643)	hnrnpr (ENSCCRG00000066734)	atp5if1a (ENSCCRG00000058593)	ENSCCRG00000075751	ENSCCRG00000042486	ENSCCRG00000059813	ENSCCRG00000078293	ENSCCRG00000067700	ENSCCRG00000009253	ENSCCRG00000044613	ENSCCRG00000062939	ENSCCRG00000063932 #17	ENSCCRG00000065967
Zebrafish	MODERN SPECIES	10																ENSDARG00000076623 #21	ENSDARG00000101559 ##27	dnajc8 (ENSDARG00000059373)	hnrnpr (ENSDARG00000014569)	atp5if1a (ENSDARG00000067975)	ADGRB1 (ENSDARG00000078529)	ENSDARG00000098377 #12	ENSDARG00000103887 #11	tatdn1 (ENSDARG00000036924)	rnf139 (ENSDARG00000036929)	tmem65 (ENSDARG00000076393)	ENSDARG00000020176	scn1bb (ENSDARG00000105003)	SYNGAP1 (ENSDARG00000063713)	lingo4a (ENSDARG00000094908)	ctss1 (ENSDARG00000036940)
Characiphysae	ANCESTRAL SPECIES	91	ENSGT00940000155027.c.a	ENSGT00390000014889.a.e	ENSGT00550000074618.a.a.lb.a	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT01100000263549.k.i.a.b.b	ENSGT00940000153770.c.a	ENSGT01100000263549.k.i.b.b	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.d.d	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b
Channel catfish	MODERN SPECIES	5	tmem65 (ENSIPUG00000007264)	ENSIPUG00000007279	rnf139 (ENSIPUG00000007294)	tatdn1 (ENSIPUG00000007324)	ndufb9 (ENSIPUG00000007362) #8	MTSS1 (ENSIPUG00000007403) #9	SCGN (ENSIPUG00000007511) #10	ENSIPUG00000007534 #11	proza (ENSIPUG00000007612)	ENSIPUG00000007644 #12	ENSIPUG00000007670	ENSIPUG00000007681	ENSIPUG00000007694	ENSIPUG00000007748	ENPP2 (ENSIPUG00000007773) #17	COL14A1 (ENSIPUG00000007874) #21	ENSIPUG00000007950 #27	ENSIPUG00000007961	ENSIPUG00000007969	ENSIPUG00000007973	ENSIPUG00000007985	ENSIPUG00000008003	ENSIPUG00000008016	ENSIPUG00000008019	ENSIPUG00000008029	ENSIPUG00000008052	ENSIPUG00000008063	ENSIPUG00000008078	ENSIPUG00000008101	ENSIPUG00000008113	ENSIPUG00000008120
Characiphysae_b	ANCESTRAL SPECIES	92	ENSGT00390000014889.a.e	ENSGT00550000074618.a.a.lb.a	ENSGT00940000154996.a.a.b	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT01100000263549.k.i.a.b.b	ENSGT00940000153770.c.a	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.d.d	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b
Electric eel	DUPLICATION
Electric eel	MODERN SPECIES	160	entpd2a.1 (ENSEEEG00000020135)	grin1b (ENSEEEG00000020142)	ENSEEEG00000020194	ENSEEEG00000020202	ENSEEEG00000020317	trpm2 (ENSEEEG00000020460)	MAP3K13 (ENSEEEG00000020470)	PFKL (ENSEEEG00000020490)	TMEM169 (ENSEEEG00000020790)	xrcc5 (ENSEEEG00000020811)	MARCHF4 (ENSEEEG00000020907)	SMARCAL1 (ENSEEEG00000020918)	nme9 (ENSEEEG00000021056)	dap1b (ENSEEEG00000021057)	hnmt (ENSEEEG00000021060)	ENSEEEG00000021061 #21	ENSEEEG00000021062
Electric eel	MODERN SPECIES	456															ENSEEEG00000012480	ENSEEEG00000012476 #21	ENSEEEG00000012474 #27	dnajc8 (ENSEEEG00000012426)	hnrnpr (ENSEEEG00000012128)	atp5if1a (ENSEEEG00000012092)	ADGRB1 (ENSEEEG00000012088)	ENSEEEG00000012086	ENSEEEG00000012084	ENSEEEG00000011869
Characoidei	ANCESTRAL SPECIES	119	ENSGT00550000074618.a.a.lb.a	ENSGT00940000154996.a.a.b	ENSGT00390000018560.a.a.a.a.b	ENSGT00940000158438.m	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00940000155167.b.a.b #12	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000162635.pb	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157621	ENSGT00940000164547.b.b	ENSGT00940000157781	ENSGT01030000235080	ENSGT00940000158322.i	ENSGT00940000166800	ENSGT00940000160086	ENSGT00940000166273	ENSGT00940000165573	ENSGT00940000158454	ENSGT00390000011619
Red-bellied piranha	MODERN SPECIES	188														ENSPNAG00000022628 #12	ENSPNAG00000003724	COL14A1 (ENSPNAG00000022703) #21	ENSPNAG00000022714 #27	ENSPNAG00000022724	ENSPNAG00000003733	ENSPNAG00000022739	ENSPNAG00000022750	ENSPNAG00000005585	dnajc8 (ENSPNAG00000022812)	hnrnpr (ENSPNAG00000022865)	atp5if1a (ENSPNAG00000022875)	ADGRB1 (ENSPNAG00000022990)	ENSPNAG00000023010	ENSPNAG00000023141	DPY19L4 (ENSPNAG00000023169)	ENSPNAG00000023185	KDM1B (ENSPNAG00000023207)
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	23	SYNGAP1 (ENSAMXG00000020546)	tmem65 (ENSAMXG00000020536)	rnf139 (ENSAMXG00000020533)	tatdn1 (ENSAMXG00000020526)	ndufb9 (ENSAMXG00000043509) #8	MTSS1 (ENSAMXG00000020509) #9	ENSAMXG00000034195 #9	ENSAMXG00000020465 #12	SCGN (ENSAMXG00000039597) #10	ENSAMXG00000020474 #11	ENSAMXG00000042311	ENSAMXG00000041009	ENSAMXG00000043671	ENSAMXG00000017732	ENPP2 (ENSAMXG00000031220) #17	COL14A1 (ENSAMXG00000012535) #21	ZHX2 (ENSAMXG00000032888) #27	DPY19L4 (ENSAMXG00000005510)	SLC4A7 (ENSAMXG00000005426)	ENSAMXG00000035763	ENSAMXG00000040545	ENSAMXG00000037183	ENSAMXG00000029508	ENSAMXG00000042022	ADGRB1 (ENSAMXG00000020775)	hnrnpr (ENSAMXG00000020800)	dnajc8 (ENSAMXG00000029561)	ENSAMXG00000044077	ENSAMXG00000041961	KDM1B (ENSAMXG00000019002)	CFAP69 (ENSAMXG00000018988)
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000030155	DNAH11 (ENSAMXG00000035408)	ENSAMXG00000037929	ENSAMXG00000020011	ENSAMXG00000020021	ENSAMXG00000040485	ENSAMXG00000033099	ENSAMXG00000020045	ENSAMXG00000029162	ENSAMXG00000034431	macc1 (ENSAMXG00000020076)	ENSAMXG00000039477	ENSAMXG00000024993	hdac9b (ENSAMXG00000034007)	cxcr3.1 (ENSAMXG00000018422)	COL14A1 (ENSAMXG00000018454) #21	mrpl13 (ENSAMXG00000041931) #23	MTBP (ENSAMXG00000018512) #24	sntb1 (ENSAMXG00000031564) #25	ENSAMXG00000018554	has2 (ENSAMXG00000018572) #26	ENSAMXG00000016487	fabp4b (ENSAMXG00000030137)	stmn2a (ENSAMXG00000033761)	upp1 (ENSAMXG00000043246)	ENSAMXG00000038383	rbm12bb (ENSAMXG00000041973)	ENSAMXG00000016455	ENSAMXG00000041676	ENSAMXG00000033602	ENSAMXG00000031944
Euteleosteomorpha	ANCESTRAL SPECIES	72					ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00960000187692 #7	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT00940000177196	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00980000199469	ENSGT00940000165771	ENSGT01100000263514.B	ENSGT00940000161047	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234974
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000167560	ENSGT00940000154412.B.a.a	ENSGT00390000003488.b.a.a	ENSGT00940000158641.a.a	ENSGT00940000163467.a.a.b	ENSGT00390000017802.c	ENSGT00940000158932	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000165771	ENSGT00940000161047	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234974	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	93	ENSGT01030000234974.c	ENSGT00390000008815.o	ENSGT00390000012691.i.b	ENSGT00940000161022.m	ENSGT00940000160076.h	ENSGT00940000159208.A.c	ENSGT00940000159762.nb.b.a	ENSGT00390000017802.c.f	ENSGT00940000158932.f	ENSGT00970000195702	ENSGT00950000183156.a.b.b.b.b.a.c.b.g #9	ENSGT00950000183108.a.d.k #10	ENSGT00940000155112.B.b.j #11	ENSGT00940000155167.b.a.b.v #12	ENSGT00940000155778.A.w #17	ENSGT00940000153769.F.m.i #21	ENSGT00950000182893.a.a.a.b.d.d #27	ENSGT00950000182893.a.a.a.a.a.b #32	ENSGT00550000074694.a.l.b #33	ENSGT01100000263489.a.a.b.a.a.a.a	ENSGT01100000263531.A.tb.a.a	ENSGT00940000165771	ENSGT01100000263514.B.ab	ENSGT00940000161047.e	ENSGT00940000155565.b.d	ENSGT00940000155188.A.g.a	ENSGT00940000160798.b	ENSGT01030000234974.d	ENSGT00390000008815.p	ENSGT00390000012691.i.a	ENSGT00940000161022.n
Salmoninae_a	ANCESTRAL SPECIES	48	ENSGT00940000160112.f.b.a	ENSGT00390000009895.f	ENSGT00940000167560.b.b	ENSGT00940000154412.B.a.a.b	ENSGT00390000003488.b.a.a.a	ENSGT00940000158641.a.a.d	ENSGT00940000163467.a.a.b.a	ENSGT00390000017802.c.f	ENSGT00940000158932.f	ENSGT00390000005809.x.a.a #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.g #9	ENSGT00950000183108.a.d.k #10	ENSGT00940000155112.B.b.j #11	ENSGT00940000155167.b.a.b.v #12	ENSGT00940000155778.A.w #17	ENSGT00940000153769.F.m.i #21	ENSGT00950000182893.a.a.a.b.d.d #27	ENSGT00950000182893.a.a.a.a.a.b #32	ENSGT00550000074694.a.l.b #33	ENSGT01100000263489.a.a.b.a.a.a.a	ENSGT01100000263531.A.tb.a.a	ENSGT01100000263531.A.tb.a.b	ENSGT00980000199469.d	ENSGT00940000165771	ENSGT01100000263514.B.ab	ENSGT00940000161047.e	ENSGT00940000155565.b.d	ENSGT00940000155188.A.g.a	ENSGT00940000160798.b	ENSGT01030000234974.d	ENSGT00390000008815.p
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000160112.f.b.a	ENSGT00390000009895.f	ENSGT00940000167560.b.b	ENSGT00940000154412.B.a.a.b	ENSGT00390000003488.b.a.a.a	ENSGT00940000158641.a.a.d	ENSGT00940000163467.a.a.b.a	ENSGT00390000017802.c.f	ENSGT00940000158932.f	ENSGT00970000195702	ENSGT00950000183156.a.b.b.b.b.a.c.b.g #9	ENSGT00950000183108.a.d.k #10	ENSGT00940000155112.B.b.j #11	ENSGT00940000155167.b.a.b.v #12	ENSGT00940000155778.A.w #17	ENSGT00940000153769.F.m.i #21	ENSGT00950000182893.a.a.a.b.d.d #27	ENSGT00950000182893.a.a.a.a.a.b #32	ENSGT00550000074694.a.l.b #33	ENSGT01100000263489.a.a.b.a.a.a.a	ENSGT01100000263531.A.tb.a.a	ENSGT00940000177196	ENSGT01100000263531.A.tb.a.b	ENSGT00980000199469.d	ENSGT00940000165771	ENSGT01100000263514.B.ab	ENSGT00940000161047.e	ENSGT00940000155565.b.d	ENSGT00940000155188.A.g.a	ENSGT00940000160798.b	ENSGT01030000234974.d
Atlantic salmon	MODERN SPECIES	5	mllt11 (ENSSSAG00000092700)	gabpb2a (ENSSSAG00000039858)	ENSSSAG00000105109	tp8l2 (ENSSSAG00000068313)	ENSSSAG00000066038	ENSSSAG00000113765	tmem65 (ENSSSAG00000095691)	rnf139 (ENSSSAG00000065972)	ENSSSAG00000065966	ENSSSAG00000094138	ENSSSAG00000064050 #9	ENSSSAG00000097414 #10	ENSSSAG00000062505 #11	ENSSSAG00000062163 #12	ENSSSAG00000057121 #17	ENSSSAG00000054025 #21	ENSSSAG00000053958 #27	ENSSSAG00000049929 #32	ENSSSAG00000107672	ENSSSAG00000049801	ENSSSAG00000049737	ENSSSAG00000049725	ENSSSAG00000049592	ENSSSAG00000108615	ENSSSAG00000049490	ENSSSAG00000105235	ENSSSAG00000049471	ENSSSAG00000049458	ENSSSAG00000048981	ENSSSAG00000048938	ENSSSAG00000048880
River trout	MODERN SPECIES	29	mllt11 (ENSSTUG00000021869)	gabpb2a (ENSSTUG00000021888)	ENSSTUG00000021925	tnfaip8l2a (ENSSTUG00000021930)	sema6d (ENSSTUG00000021947)	ENSSTUG00000022134	ENSSTUG00000022138	tmem65 (ENSSTUG00000022145)	rnf139 (ENSSTUG00000022156)	ENSSTUG00000022177	MTSS1 (ENSSTUG00000022309) #9	SCGN (ENSSTUG00000022586) #10	CARMIL1 (ENSSTUG00000022698) #11	ENSSTUG00000024824 #12	ENPP2 (ENSSTUG00000024922) #17	COL14A1 (ENSSTUG00000028435) #21	ZHX2 (ENSSTUG00000031093) #27	ZHX1 (ENSSTUG00000031095) #32	ATAD2 (ENSSTUG00000031100) #33	ENSSTUG00000031442	ENSSTUG00000031457	ENSSTUG00000031487	ENSSTUG00000031631	selenoh (ENSSTUG00000031646)	psmb10 (ENSSTUG00000031673)	ENSSTUG00000031806	ENSSTUG00000031830	ENSSTUG00000031857	lgals17 (ENSSTUG00000031937)	ENSSTUG00000031954	rps18 (ENSSTUG00000032263)
Oncorhynchus	ANCESTRAL SPECIES	40	ENSGT00940000160112.f.b.a	ENSGT00390000009895.f	ENSGT00940000167560.b.b	ENSGT00940000154412.B.a.a.b	ENSGT00390000003488.b.a.a.a	ENSGT00940000158641.a.a.d	ENSGT00940000163467.a.a.b.a	ENSGT00390000017802.c.f	ENSGT00940000158932.f	ENSGT00390000005809.x.a.a #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.g #9	ENSGT00950000183108.a.d.k #10	ENSGT00940000155112.B.b.j #11	ENSGT00940000155167.b.a.b.v #12	ENSGT00940000155778.A.w #17	ENSGT00940000153769.F.m.i #21	ENSGT00950000182893.a.a.a.b.d.d #27	ENSGT00950000182893.a.a.a.a.a.b #32	ENSGT00550000074694.a.l.b #33	ENSGT01100000263489.a.a.b.a.a.a.a	ENSGT01100000263531.A.tb.a.a	ENSGT01100000263531.A.tb.a.b	ENSGT00980000199469.d	ENSGT00940000165771	ENSGT01100000263514.B.ab	ENSGT00940000161047.e	ENSGT00940000155565.b.d	ENSGT00940000155188.A.g.a	ENSGT00940000160798.b	ENSGT01030000234974.d	ENSGT00390000008815.p
Oncorhynchus_a	ANCESTRAL SPECIES	45	ENSGT00940000160112.f.b.a	ENSGT00390000009895.f	ENSGT00940000167560.b.b	ENSGT00940000154412.B.a.a.b	ENSGT00390000003488.b.a.a.a	ENSGT00940000158641.a.a.d	ENSGT00940000163467.a.a.b.a	ENSGT00390000017802.c.f	ENSGT00940000158932.f	ENSGT00390000005809.x.a.a #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.g #9	ENSGT00950000183108.a.d.k #10	ENSGT00940000155112.B.b.j #11	ENSGT00940000155167.b.a.b.v #12	ENSGT00940000155778.A.w #17	ENSGT00940000153769.F.m.i #21	ENSGT00950000182893.a.a.a.b.d.d #27	ENSGT00950000182893.a.a.a.a.a.b #32	ENSGT00550000074694.a.l.b #33	ENSGT01100000263489.a.a.b.a.a.a.a	ENSGT01100000263531.A.tb.a.a	ENSGT01100000263531.A.tb.a.b	ENSGT00980000199469.d	ENSGT00940000165771	ENSGT01100000263514.B.ab	ENSGT00940000161047.e	ENSGT00940000155565.b.d	ENSGT00940000155188.A.h	ENSGT00940000160798.b	ENSGT01030000234974.d	ENSGT00390000008815.p
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	24	cdc42se1 (ENSOTSG00005007333)	mllt11 (ENSOTSG00005007335)	gabpb2a (ENSOTSG00005007336)	ENSOTSG00005007337	tnfaip8l2a (ENSOTSG00005007338)	sema6d (ENSOTSG00005007343)	ENSOTSG00005007349	tmem65 (ENSOTSG00005007350)	rnf139 (ENSOTSG00005007351)	ndufb9 (ENSOTSG00005007352) #8	MTSS1 (ENSOTSG00005007363) #9	SCGN (ENSOTSG00005007369) #10	ENSOTSG00005007382 #11	ENSOTSG00005009889 #12	ENPP2 (ENSOTSG00005009895) #17	COL14A1 (ENSOTSG00005015872) #21	ZHX2 (ENSOTSG00005018919) #27	ZHX1 (ENSOTSG00005018921) #32	ATAD2 (ENSOTSG00005018957) #33	ENSOTSG00005021034	ENSOTSG00005021041	ENSOTSG00005021046	ENSOTSG00005021049	psmb10 (ENSOTSG00005021055)	ENSOTSG00005021133	ENSOTSG00005021135	ENSOTSG00005021139	lgals17 (ENSOTSG00005021142)	ENSOTSG00005021150	rps18 (ENSOTSG00005021721)	ENSOTSG00005021723
Chinook salmon	MODERN SPECIES	45				PPM1A (ENSOTSG00005033416)	SIX1 (ENSOTSG00005033415)	six4a (ENSOTSG00005033414)	ENSOTSG00005033413	tmem65 (ENSOTSG00005033412)	rnf139 (ENSOTSG00005033411)	ndufb9 (ENSOTSG00005033410) #8	MTSS1 (ENSOTSG00005033053) #9	SCGN (ENSOTSG00005033051) #10	ENSOTSG00005032777 #11	ENSOTSG00005032772 #12	ENPP2 (ENSOTSG00005025124) #17	COL14A1 (ENSOTSG00005022782) #21	ZHX2 (ENSOTSG00005022773) #27	ZHX1 (ENSOTSG00005045942) #32	ATAD2 (ENSOTSG00005045573) #33	ENSOTSG00005045572	ENSOTSG00005045570	ENSOTSG00005045567	ENSOTSG00005045565	ENSOTSG00005045564	psmb10 (ENSOTSG00005045561)	ENSOTSG00005045560	ENSOTSG00005045559	ENSOTSG00005045558	lgals17 (ENSOTSG00005045557)	ENSOTSG00005045556	rps18 (ENSOTSG00005045555)
Coho salmon	MODERN SPECIES	5	CDC42SE1 (ENSOKIG00005011699)	mllt11 (ENSOKIG00005011693)	gabpb2a (ENSOKIG00005011648)	ENSOKIG00005011641	tnfaip8l2a (ENSOKIG00005011616)	sema6d (ENSOKIG00005011434)	ENSOKIG00005011410	tmem65 (ENSOKIG00005011405)	rnf139 (ENSOKIG00005011395)	ENSOKIG00005011318	MTSS1 (ENSOKIG00005011225) #9	SCGN (ENSOKIG00005011084) #10	CARMIL1 (ENSOKIG00005009783) #11	ENSOKIG00005009722 #12	ENPP2 (ENSOKIG00005008895) #17	COL14A1 (ENSOKIG00005005535) #21	ZHX2 (ENSOKIG00005005371) #27	ZHX1 (ENSOKIG00005005366) #32	ATAD2 (ENSOKIG00005004525) #33	ENSOKIG00005004385	ENSOKIG00005004373	ENSOKIG00005004329	ENSOKIG00005004279	ENSOKIG00005004255	ENSOKIG00005004245	selenoh (ENSOKIG00005004237)	psmb10 (ENSOKIG00005024141)	ENSOKIG00005024100	ENSOKIG00005024076	ENSOKIG00005024019	lgals17 (ENSOKIG00005023966)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000018693	ENSOMYG00000018708	ENSOMYG00000054964	ENSOMYG00000018750	ENSOMYG00000068098	ENSOMYG00000057468	ENSOMYG00000065567	rnf139 (ENSOMYG00000018824)	NDUFB9 (ENSOMYG00000018835) #8	ENSOMYG00000018856 #9	ENSOMYG00000019506 #10	ENSOMYG00000019796 #11	ENSOMYG00000022019 #12	ENSOMYG00000022161 #17	ENSOMYG00000072488	ENSOMYG00000022504 #21	ENSOMYG00000022682 #27	ENSOMYG00000022688 #32	ENSOMYG00000022811 #33	ENSOMYG00000022969	ENSOMYG00000016094	ENSOMYG00000023134	ENSOMYG00000070779	ENSOMYG00000065472	ENSOMYG00000023140	ENSOMYG00000075092	ENSOMYG00000023159	ENSOMYG00000023189	ENSOMYG00000023218	ENSOMYG00000056776	ENSOMYG00000023292
Huchen	MODERN SPECIES	428													ENSHHUG00000010472	ENPP2 (ENSHHUG00000010493) #17	ENSHHUG00000010737 #20	COL14A1 (ENSHHUG00000010769) #21	ZHX2 (ENSHHUG00000011920) #27	ZHX1 (ENSHHUG00000011922) #32	ATAD2 (ENSHHUG00000011929) #33	ENSHHUG00000012002	ENSHHUG00000012006	ENSHHUG00000012023	ENSHHUG00000012029	selenoh (ENSHHUG00000012036)	psmb10 (ENSHHUG00000012059)	ENSHHUG00000012149	ENSHHUG00000012153	ENSHHUG00000012157	ENSHHUG00000012161	lgals17 (ENSHHUG00000012168)	rps18 (ENSHHUG00000012176)
Salmoninae	ANCESTRAL SPECIES	105	ENSGT00940000167560.b.a	ENSGT00940000154412.B.a.a.a	ENSGT00390000003488.b.a.a.b	ENSGT00940000158641.a.a.c	ENSGT00390000017802.c.e	ENSGT00940000158932.e	ENSGT00940000156272	ENSGT00390000005809 #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.h #9	ENSGT00950000183108.a.d.l #10	ENSGT00940000155112.B.b.i #11	ENSGT00940000155167.b.a.b.u #12	ENSGT00940000156034.b	ENSGT00940000155778.A.x #17	ENSGT00520000055667.h #20	ENSGT00940000153769.F.m.j #21	ENSGT00950000182893.a.a.a.b.d.c #27	ENSGT00950000182893.a.a.a.a.a.a #32	ENSGT00550000074694.a.l.a #33	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.d	ENSGT01100000263531.A.tb.b	ENSGT00980000199469.c.a.a	ENSGT01100000263514.B.`b	ENSGT00940000161047.f	ENSGT00940000155565.b.c
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00940000167560.b.a	ENSGT00940000154412.B.a.a.a	ENSGT00390000003488.b.a.a.b	ENSGT00940000158641.a.a.c	ENSGT00940000163467.a.a.b.b	ENSGT00390000017802.c.e	ENSGT00940000158932.e	ENSGT00940000156272	ENSGT00390000005809.x.a.b #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.h #9	ENSGT00950000183108.a.d.l #10	ENSGT00940000155112.B.b.i #11	ENSGT00940000155167.b.a.b.u #12	ENSGT00940000156034.b	ENSGT00940000155778.A.x #17	ENSGT00940000153769.F.m.j #21	ENSGT00950000182893.a.a.a.b.d.c #27	ENSGT00950000182893.a.a.a.a.a.a #32	ENSGT00550000074694.a.l.a #33	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.d.a	ENSGT01100000263531.A.tb.b	ENSGT00980000199469.c.a.a	ENSGT01100000263514.B.`b	ENSGT00940000161047.f	ENSGT00940000155565.b.c	ENSGT00940000180480.b	ENSGT00940000155188.A.g.b	ENSGT00940000160798.a	ENSGT01030000234974.c	ENSGT00390000008815.o	ENSGT00390000012691.i.b
Salmo	ANCESTRAL SPECIES	40	ENSGT00940000167560.b.a	ENSGT00940000154412.B.a.a.a	ENSGT00390000003488.b.a.a.b	ENSGT00940000158641.a.a.c	ENSGT00940000163467.a.a.b.b	ENSGT00390000017802.c.e	ENSGT00940000158932.e	ENSGT00940000156272	ENSGT00390000005809.x.a.b #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.h #9	ENSGT00950000183108.a.d.l #10	ENSGT00940000155112.B.b.i #11	ENSGT00940000155167.b.a.b.u #12	ENSGT00940000156034.b	ENSGT00940000155778.A.x #17	ENSGT00940000153769.F.m.j #21	ENSGT00950000182893.a.a.a.b.d.c #27	ENSGT00950000182893.a.a.a.a.a.a #32	ENSGT00550000074694.a.l.a #33	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.d.a	ENSGT01100000263531.A.tb.b.c.a	ENSGT00980000199469.c.a.a	ENSGT01100000263514.B.`b	ENSGT00940000161047.f	ENSGT00940000155565.b.c	ENSGT00940000180480.b	ENSGT00940000155188.A.g.b	ENSGT00940000160798.a	ENSGT01100000263531.A.tb.b.d	ENSGT01030000234974.c	ENSGT00390000008815.o
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000098176	ENSSSAG00000039746	ENSSSAG00000104551	tmem65 (ENSSSAG00000106284)	rnf139 (ENSSSAG00000039683)	tatdn1 (ENSSSAG00000038615)	ndufb9 (ENSSSAG00000038397) #8	MTSS1 (ENSSSAG00000019850) #9	ENSSSAG00000108641 #10	ENSSSAG00000009103 #11	ENSSSAG00000080399 #12	ENSSSAG00000079801	ENSSSAG00000115235	ENSSSAG00000079724 #17	ENSSSAG00000095165	ENSSSAG00000078980 #21	ENSSSAG00000087814	ENSSSAG00000078926 #27	ENSSSAG00000053956 #32	ENSSSAG00000078859 #33	ENSSSAG00000083542	ENSSSAG00000117066	ENSSSAG00000101238	ENSSSAG00000078819	CENPA (ENSSSAG00000078816)	ENSSSAG00000078793	ENSSSAG00000078781	ENSSSAG00000078775	ENSSSAG00000078766	ENSSSAG00000078746	ENSSSAG00000122113
River trout	MODERN SPECIES	27	tnfaip8l2a (ENSSTUG00000044574)	ENSSTUG00000044556	sema6d (ENSSTUG00000044501)	ENSSTUG00000044483	tmem65 (ENSSTUG00000044472)	rnf139 (ENSSTUG00000044467)	tatdn1 (ENSSTUG00000044387)	ndufb9 (ENSSTUG00000044373) #8	MTSS1 (ENSSTUG00000044146) #9	SCGN (ENSSTUG00000044125) #10	CARMIL1 (ENSSTUG00000042914) #11	ENSSTUG00000042776 #12	ENSSTUG00000042767	ENSSTUG00000041220	ENPP2 (ENSSTUG00000040284) #17	COL14A1 (ENSSTUG00000036579) #21	ZHX2 (ENSSTUG00000036466) #27	ZHX1 (ENSSTUG00000036464) #32	ATAD2 (ENSSTUG00000036114) #33	ENSSTUG00000036090	ENSSTUG00000036050	ENSSTUG00000036004	ENSSTUG00000035991	selenoh (ENSSTUG00000035981)	psmb10 (ENSSTUG00000035804)	ENSSTUG00000035754	ENSSTUG00000035743	ENSSTUG00000035732	ENSSTUG00000035624	ENSSTUG00000035610	lgals17 (ENSSTUG00000035581)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000167560.b.a	ENSGT00940000154412.B.a.a.a	ENSGT00390000003488.b.a.a.b	ENSGT00940000158641.a.a.c	ENSGT00940000163467.a.a.b.b	ENSGT00390000017802.c.e	ENSGT00940000158932.e	ENSGT00940000156272	ENSGT00390000005809.x.a.b #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.h #9	ENSGT00950000183108.a.d.l #10	ENSGT00940000155112.B.b.i #11	ENSGT00940000155167.b.a.b.u #12	ENSGT00940000156034.b	ENSGT00940000155778.A.x #17	ENSGT00940000153769.F.m.j #21	ENSGT00950000182893.a.a.a.b.d.c #27	ENSGT00950000182893.a.a.a.a.a.a #32	ENSGT00550000074694.a.l.a #33	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.d.a	ENSGT01100000263531.A.tb.b	ENSGT00980000199469.c.a.a	ENSGT01100000263514.B.`b	ENSGT00940000161047.f	ENSGT00940000155565.b.c	ENSGT00940000180480.a	ENSGT00940000155188.A.g.b	ENSGT00940000160798.a	ENSGT01030000234974.c	ENSGT00390000008815.o	ENSGT00390000012691.i.b
Rainbow trout	MODERN SPECIES	9	ENSOMYG00000064831	ENSOMYG00000027218	ENSOMYG00000048249	tmem65 (ENSOMYG00000027059)	rnf139 (ENSOMYG00000027051)	tatdn1 (ENSOMYG00000026649)	ENSOMYG00000026543 #8	MTSS1 (ENSOMYG00000026174) #9	ENSOMYG00000069027	ENSOMYG00000056632 #10	ENSOMYG00000021196 #11	ENSOMYG00000020675 #12	ENSOMYG00000019775	ENSOMYG00000064426	ENSOMYG00000019025 #17	ENSOMYG00000016450 #21	ENSOMYG00000016377 #27	ENSOMYG00000016374 #32	ENSOMYG00000016141 #33	ENSOMYG00000016131	ENSOMYG00000016122	ENSOMYG00000077100	ENSOMYG00000072116	ENSOMYG00000016109	ENSOMYG00000016039	ENSOMYG00000016010	ENSOMYG00000015999	ENSOMYG00000015921	ENSOMYG00000015832	ENSOMYG00000015865	ENSOMYG00000015753
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00390000009895.e	ENSGT00940000167560.b.a	ENSGT00940000154412.B.a.a.a	ENSGT00390000003488.b.a.a.b	ENSGT00940000158641.a.a.c	ENSGT00390000017802.c.e	ENSGT00940000158932.e	ENSGT00940000156272	ENSGT00390000005809.x.b #8	ENSGT00950000183156.a.b.b.b.b.a.c.b.h #9	ENSGT00950000183108.a.d.l #10	ENSGT00940000155112.B.b.i #11	ENSGT00940000155167.b.a.b.u #12	ENSGT00940000156034.b	ENSGT00940000155778.A.x #17	ENSGT00940000153769.F.m.j #21	ENSGT00950000182893.a.a.a.b.d.c #27	ENSGT00950000182893.a.a.a.a.a.a #32	ENSGT00550000074694.a.l.a #33	ENSGT01100000263533.b.b.b.a.b.b.b.b.b.b.d.a	ENSGT01100000263531.A.tb.b	ENSGT00980000199469.c.a.a	ENSGT01100000263514.B.`b	ENSGT00940000161047.f	ENSGT00940000155565.b.c	ENSGT00940000180480.a	ENSGT00940000155188.A.g.b	ENSGT00940000160798.a	ENSGT01030000234974.c	ENSGT00390000008815.o	ENSGT00390000012691.i.b
Chinook salmon	MODERN SPECIES	4	mllt11 (ENSOTSG00005027186)	gabpb2a (ENSOTSG00005027189)	ENSOTSG00005027193	tnfaip8l2a (ENSOTSG00005027195)	sema6d (ENSOTSG00005027199)	tmem65 (ENSOTSG00005027203)	rnf139 (ENSOTSG00005027204)	tatdn1 (ENSOTSG00005027212)	ndufb9 (ENSOTSG00005027686) #8	MTSS1 (ENSOTSG00005027687) #9	SCGN (ENSOTSG00005027753) #10	CARMIL1 (ENSOTSG00005027806) #11	ENSOTSG00005033039 #12	ENSOTSG00005033040	ENPP2 (ENSOTSG00005033098) #17	COL14A1 (ENSOTSG00005036347) #21	ZHX2 (ENSOTSG00005036351) #27	ZHX1 (ENSOTSG00005036352) #32	ATAD2 (ENSOTSG00005036353) #33	ENSOTSG00005036413	ENSOTSG00005036415	ENSOTSG00005036420	ENSOTSG00005036421	psmb10 (ENSOTSG00005036432)	ENSOTSG00005036437	ENSOTSG00005036439	ENSOTSG00005036440	lgals17 (ENSOTSG00005036443)	VPS52 (ENSOTSG00005036444)	rps18 (ENSOTSG00005036516)	RING1 (ENSOTSG00005036521)
Coho salmon	MODERN SPECIES	8	MLLT11 (ENSOKIG00005036185)	gabpb2a (ENSOKIG00005036192)	ENSOKIG00005036229	ENSOKIG00005036244	ENSOKIG00005036267	tmem65 (ENSOKIG00005036508)	ndufb9 (ENSOKIG00005036533) #8	rnf139 (ENSOKIG00005036560)	tatdn1 (ENSOKIG00005036611)	MTSS1 (ENSOKIG00005036916) #9	SCGN (ENSOKIG00005037281) #10	ENSOKIG00005037800 #11	ENSOKIG00005041741 #12	ENSOKIG00005041784	ENPP2 (ENSOKIG00005042065) #17	COL14A1 (ENSOKIG00005045513) #21	ENSOKIG00005045784 #27	ZHX1 (ENSOKIG00005045793) #32	ATAD2 (ENSOKIG00005045862) #33	ENSOKIG00005046622	ENSOKIG00005046640	PSMB10 (ENSOKIG00005046699)	ENSOKIG00005046730	ENSOKIG00005046743	ENSOKIG00005046747	ENSOKIG00005046755	ENSOKIG00005046802	VPS52 (ENSOKIG00005046823)	rps18 (ENSOKIG00005046892)	RING1 (ENSOKIG00005046917)	slc39a7 (ENSOKIG00005046931)
Huchen	MODERN SPECIES	1274												ENSHHUG00000038184 #12	ENSHHUG00000038192	ENPP2 (ENSHHUG00000038396) #17	ENSHHUG00000038481 #20	COL14A1 (ENSHHUG00000038483) #21	ZHX2 (ENSHHUG00000039163) #27	ZHX1 (ENSHHUG00000039169) #32	ATAD2 (ENSHHUG00000039171) #33	ENSHHUG00000039199	ENSHHUG00000039213	ENSHHUG00000040026	ENSHHUG00000040075	ENSHHUG00000040077	ENSHHUG00000040087	ENSHHUG00000040327
Northern pike	MODERN SPECIES	9	ENSELUG00000026380	ENSELUG00000017406	ENSELUG00000017420	ENSELUG00000000669	ENSELUG00000029998	tmem65 (ENSELUG00000017556)	rnf139 (ENSELUG00000017574)	tatdn1 (ENSELUG00000017606)	ndufb9 (ENSELUG00000000694) #8	MTSS1 (ENSELUG00000017698) #9	SCGN (ENSELUG00000017772) #10	ENSELUG00000017845 #11	ENSELUG00000017861 #12	ENSELUG00000017901	ENPP2 (ENSELUG00000018089) #17	COL14A1 (ENSELUG00000018261) #21	ZHX2 (ENSELUG00000018297) #27	ZHX1 (ENSELUG00000018305) #32	ATAD2 (ENSELUG00000018318) #33	ENSELUG00000032911	ENSELUG00000018403	ENSELUG00000001152	ENSELUG00000018492	ENSELUG00000018499	cenpa (ENSELUG00000034011)	psb7 (ENSELUG00000028849)	ENSELUG00000018643	ENSELUG00000018710	ENSELUG00000018783	ENSELUG00000018802	ENSELUG00000018818
Acanthomorphata	ANCESTRAL SPECIES	159						ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT00940000177196	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000165771	ENSGT01100000263514.B	ENSGT00940000161047	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178053	ENSGT00390000008815
Cod	MODERN SPECIES	14	ENSGMOG00000035540	ENSGMOG00000010754	ENSGMOG00000013730	ENSGMOG00000036428	ENSGMOG00000022731	ENSGMOG00000037053	ENSGMOG00000033292	ENSGMOG00000036733	ENSGMOG00000023214	ENSGMOG00000015578	ENSGMOG00000022952	ENSGMOG00000031984	ENSGMOG00000032089	ENSGMOG00000037145 #32	ENSGMOG00000024401	ENSGMOG00000031601 #21	ENSGMOG00000004068 #17	ENSGMOG00000001988	ENSGMOG00000001968 #12	ENSGMOG00000019464 #11	ENSGMOG00000019452 #10	ENSGMOG00000024718 #9	ENSGMOG00000035034	ENSGMOG00000024682	tatdn1 (ENSGMOG00000003653)	ENSGMOG00000003639 #8	ENSGMOG00000019735	ENSGMOG00000032090	ENSGMOG00000008533	ENSGMOG00000029122	ENSGMOG00000028739
Euacanthomorphacea	ANCESTRAL SPECIES	89						ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT01060000248670	ENSGT00940000176878	ENSGT00940000165771	ENSGT01100000263514.B	ENSGT00940000161047	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178053	ENSGT00390000008815
Pinecone sodierfish	DUPLICATION
Pinecone sodierfish	MODERN SPECIES	2	ENSMMDG00005003320	ENSMMDG00005003322	ENSMMDG00005003325	ndufb9 (ENSMMDG00005003326) #8	tatdn1 (ENSMMDG00005003355)	rnf139 (ENSMMDG00005004033)	tmem65 (ENSMMDG00005004046)	ENSMMDG00005004086 #9	ENSMMDG00005004263	ENSMMDG00005004496 #11	SCGN (ENSMMDG00005007541) #10	ENSMMDG00005007549 #12	ENSMMDG00005007565	ENPP2 (ENSMMDG00005007612) #17	ENSMMDG00005007936	COL14A1 (ENSMMDG00005007941) #21	ENSMMDG00005007949	ZHX2 (ENSMMDG00005007952) #27	ZHX1 (ENSMMDG00005007953) #32	ATAD2 (ENSMMDG00005007957) #33	mhc1zka (ENSMMDG00005007962)	ENSMMDG00005007966	ENSMMDG00005007968	selenoh (ENSMMDG00005007970)	psmb10 (ENSMMDG00005007974)	ENSMMDG00005007985	ENSMMDG00005008035	ENSMMDG00005008048	ENSMMDG00005008050	ENSMMDG00005008053	ENSMMDG00005008054
Pinecone sodierfish	MODERN SPECIES	7	gpn2 (ENSMMDG00005014502)	nr0b2a (ENSMMDG00005014497)	tpbgl (ENSMMDG00005014485)	tmem222a (ENSMMDG00005014430)	wdtc1 (ENSMMDG00005014107)	CEP85 (ENSMMDG00005014101)	ENSMMDG00005014099	ENSMMDG00005014097	ENSMMDG00005014095	CLEC3B (ENSMMDG00005014092)	cdcp1a (ENSMMDG00005014089)	lars2 (ENSMMDG00005010819)	LIMD1 (ENSMMDG00005010776)	deptor (ENSMMDG00005010773) #20	ENSMMDG00005010769 #22	ENSMMDG00005010764 #21	mrpl13 (ENSMMDG00005010739) #23	dscc1 (ENSMMDG00005010728) #19	CPQ (ENSMMDG00005010507)	ENSMMDG00005010496	MRS2 (ENSMMDG00005010421)	ENSMMDG00005010419	ENSMMDG00005010416	ttk (ENSMMDG00005010396)	bckdhb (ENSMMDG00005009944)	TENT5A (ENSMMDG00005009936)	IBTK (ENSMMDG00005009868)	tpbgb (ENSMMDG00005009852)	ube3d (ENSMMDG00005009851)	DOP1A (ENSMMDG00005008569)	ENSMMDG00005008552
Percomorphaceae	ANCESTRAL SPECIES	84						ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT01060000248670	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178053	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00940000158852.e.b
Tiger tail seahorse	MODERN SPECIES	159	ENSHCOG00000007219	ENSHCOG00000007235	ENSHCOG00000007246	ENSHCOG00000007254	ENSHCOG00000007266	ube2g2 (ENSHCOG00000007271)	sema6d (ENSHCOG00000008553)	ENSHCOG00000008665	rps18 (ENSHCOG00000008684)	VPS52 (ENSHCOG00000008734)	ENSHCOG00000008789 #11	ENSHCOG00000008815	ENSHCOG00000008831	ENPP2 (ENSHCOG00000008850) #17	ENSHCOG00000008880 ##21	ENSHCOG00000008923 #21	ENSHCOG00000008932 #27	ZHX1 (ENSHCOG00000008956) #32	mhc1zka (ENSHCOG00000008964)	cibar1 (ENSHCOG00000009020)	ENSHCOG00000009029	ENSHCOG00000009045	selenoh (ENSHCOG00000009065)	ENSHCOG00000009073	ints3 (ENSHCOG00000009084)	KHDRBS3 (ENSHCOG00000009110)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT01100000263549.j.b.h	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053	ENSGT01030000234828
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT01100000263549.j.b.h	ENSGT00940000153770.l.b.b.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT01030000234575.c.a.a.b	ENSGT00940000178336.d	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815
Anabantaria	ANCESTRAL SPECIES	30					ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Anabantoidei	ANCESTRAL SPECIES	39	ENSGT01080000257344.a.b.b.a.a.b.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.b.b.a.a.a.a	ENSGT01030000234589.g.a.h	ENSGT01080000257344.a.b.b.b.b.b.b.a.a	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771
Climbing perch	MODERN SPECIES	2	ENSATEG00000013557	ENSATEG00000029787	ENSATEG00000013547	ENSATEG00000027354	ENSATEG00000013654	ENSATEG00000013671 #8	tatdn1 (ENSATEG00000013700)	ENSATEG00000013738	tmem65 (ENSATEG00000013771)	ENSATEG00000013800 #9	ENSATEG00000013901 #10	ENSATEG00000014003 #11	ENSATEG00000014031 #12	ENSATEG00000014039	ENSATEG00000014068 #17	ENSATEG00000014155 #21	ENSATEG00000029515	ENSATEG00000014237	ENSATEG00000014268 #27	ENSATEG00000014278 #32	ENSATEG00000014302 #33	ENSATEG00000014777	ENSATEG00000025337	ENSATEG00000014596	ENSATEG00000015144	ENSATEG00000015152	ENSATEG00000025208	ENSATEG00000015183	ENSATEG00000015170	ENSATEG00000027668	ENSATEG00000015375
Siamese fighting fish	MODERN SPECIES	2	ENSBSLG00000004117	ENSBSLG00000004035	ENSBSLG00000004027	ENSBSLG00000003996	ndufb9 (ENSBSLG00000003978) #8	tatdn1 (ENSBSLG00000003861)	rnf139 (ENSBSLG00000003770)	tmem65 (ENSBSLG00000003751)	MTSS1 (ENSBSLG00000003677) #9	SCGN (ENSBSLG00000003054) #10	ENSBSLG00000003051 #12	ENSBSLG00000003032 #11	ENSBSLG00000003025 #12	ENSBSLG00000003022	ENPP2 (ENSBSLG00000002510) #17	ENSBSLG00000021929 #21	ENSBSLG00000021539 #27	ZHX1 (ENSBSLG00000021525) #32	mhc1zka (ENSBSLG00000021513)	ENSBSLG00000021510	ENSBSLG00000021500	ENSBSLG00000021489	ENSBSLG00000021461	gnb3b (ENSBSLG00000021452)	eno2 (ENSBSLG00000021161)	ENSBSLG00000020326	ENSBSLG00000020322	chd4a (ENSBSLG00000019870)	vamp1a (ENSBSLG00000019802)	IFFO1 (ENSBSLG00000019761)	ENSBSLG00000019590
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000027142	ENSMAMG00000019537	ENSMAMG00000025188	ENSMAMG00000019905	ENSMAMG00000019910 #8	tatdn1 (ENSMAMG00000019919)	ENSMAMG00000019937	tmem65 (ENSMAMG00000019946)	ENSMAMG00000019950 #9	ENSMAMG00000019974 #10	ENSMAMG00000019997 #11	ENSMAMG00000020044 #12	ENSMAMG00000020053	ENSMAMG00000024503	ENSMAMG00000020070 #17	ENSMAMG00000020118 #21	ENSMAMG00000025601	ENSMAMG00000025122	ENSMAMG00000020149 #27	ENSMAMG00000020153 #32	ENSMAMG00000020161 #33	ENSMAMG00000020199	ENSMAMG00000020178	ENSMAMG00000025460	ENSMAMG00000026975	ENSMAMG00000025430	ENSMAMG00000020965	ENSMAMG00000028624	ENSMAMG00000025045	ENSMAMG00000020980	ENSMAMG00000025941
Carangaria	ANCESTRAL SPECIES	14	ENSGT01030000234575.c.a.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Pleuronectoidei	ANCESTRAL SPECIES	49	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00390000013354.b.b	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00390000002368	ENSGT00940000158421	ENSGT00390000018422
Tongue sole	MODERN SPECIES	9	RING1 (ENSCSEG00000018216)	rps18 (ENSCSEG00000018231)	ENSCSEG00000018241	glmp (ENSCSEG00000018246)	cct3 (ENSCSEG00000018256)	pdia8 (ENSCSEG00000018270)	ints3 (ENSCSEG00000018322)	npr1a (ENSCSEG00000018368)	ENSCSEG00000018392	ENSCSEG00000018398	ENSCSEG00000018418	ENSCSEG00000018429	ENSCSEG00000018444 #12	ENSCSEG00000018458	ENPP2 (ENSCSEG00000018526) #17	ENSCSEG00000018734 #21	ENSCSEG00000018775	VPS52 (ENSCSEG00000018798)	jtb (ENSCSEG00000018809)	ENSCSEG00000018815	ENSCSEG00000018822	ENSCSEG00000018829	ENSCSEG00000018836	ENSCSEG00000018857	lrp12 (ENSCSEG00000018869)	ENSCSEG00000018894	ENSCSEG00000018907 #27	ZHX1 (ENSCSEG00000018911) #32	mhc1zka (ENSCSEG00000018937)	ENSCSEG00000019022	ENSCSEG00000019029
Turbot	MODERN SPECIES	14	ENSSMAG00000013418	ENSSMAG00000030919	ENSSMAG00000026297	ENSSMAG00000037364	ENSSMAG00000026389	ENSSMAG00000013432 #8	tatdn1 (ENSSMAG00000013461)	ENSSMAG00000013507	tmem65 (ENSSMAG00000013522)	ENSSMAG00000013529 #9	ENSSMAG00000013560 #10	ENSSMAG00000013601 #11	ENSSMAG00000013613 #12	ENSSMAG00000013625	ENSSMAG00000013835 #17	ENSSMAG00000013946 #21	ENSSMAG00000033745	ENSSMAG00000014021 #27	ENSSMAG00000024266 #32	ENSSMAG00000014043	ENSSMAG00000025486	ENSSMAG00000014097	ENSSMAG00000035833	ENSSMAG00000014379	ENSSMAG00000014421	ENSSMAG00000014448	ENSSMAG00000014473	ENSSMAG00000021782	ENSSMAG00000014516	ENSSMAG00000014552	ENSSMAG00000014573
Carangaria_A	ANCESTRAL SPECIES	36	ENSGT01030000234575.c.a.a.b	ENSGT01080000257344.a.b.b.b.b.b.b.a.b.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Barramundi perch	MODERN SPECIES	251	ENSLCAG00010024353	ENSLCAG00010024358	pomca (ENSLCAG00010024362)	ENSLCAG00010024370	ndufb9 (ENSLCAG00010024378) #8	tatdn1 (ENSLCAG00010024394)	rnf139 (ENSLCAG00010024418)	tmem65 (ENSLCAG00010024426)	MTSS1 (ENSLCAG00010024441) #9	ENSLCAG00010000147	SCGN (ENSLCAG00010000152) #10	CARMIL1 (ENSLCAG00010000458) #11	ENSLCAG00010000906 #12	ENSLCAG00010000956	ENPP2 (ENSLCAG00010001062) #17	COL14A1 (ENSLCAG00010001254) #21	ENSLCAG00010001489 #27	ZHX1 (ENSLCAG00010001490) #32
Seriola	ANCESTRAL SPECIES	68	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT01060000248670	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691
Greater amberjack	MODERN SPECIES	95	pomca (ENSSDUG00000014034)	ENSSDUG00000014010	ndufb9 (ENSSDUG00000013997) #8	tatdn1 (ENSSDUG00000013973)	rnf139 (ENSSDUG00000013943)	tmem65 (ENSSDUG00000013926)	MTSS1 (ENSSDUG00000013886) #9	ENSSDUG00000013876	SCGN (ENSSDUG00000013722) #10	ENSSDUG00000013593 #11	ENSSDUG00000013573 #12	ENSSDUG00000013142	ENPP2 (ENSSDUG00000012801) #17	ENSSDUG00000012752	ENSSDUG00000012741	COL14A1 (ENSSDUG00000012638) #21	ENSSDUG00000012617 #27	ZHX1 (ENSSDUG00000012602) #32	ENSSDUG00000012526 #33	mhc1zka (ENSSDUG00000012456)	ENSSDUG00000012436	ENSSDUG00000012434	ENSSDUG00000012423	ENSSDUG00000012399	ENSSDUG00000012389	ENSSDUG00000012335	ENSSDUG00000012319	ENSSDUG00000012305	VPS52 (ENSSDUG00000012229)	rps18 (ENSSDUG00000012209)	RING1 (ENSSDUG00000012185)
Yellowtail amberjack	MODERN SPECIES	3022	pomca (ENSSLDG00000019378)	ENSSLDG00000019391	ndufb9 (ENSSLDG00000019419) #8	tatdn1 (ENSSLDG00000019432)	rnf139 (ENSSLDG00000019456)	tmem65 (ENSSLDG00000019479)	MTSS1 (ENSSLDG00000019506) #9	ENSSLDG00000019565	ENSSLDG00000019572	CARMIL1 (ENSSLDG00000019588) #11	ENSSLDG00000019654 #12	ENSSLDG00000019665	ENSSLDG00000019675	ENSSLDG00000019702	ENPP2 (ENSSLDG00000019717) #17	COL14A1 (ENSSLDG00000019803) #21	ENSSLDG00000019888	ENSSLDG00000019899	ENSSLDG00000019913 #27	ENSSLDG00000019926	ENSSLDG00000019937	ENSSLDG00000019950	ZHX1 (ENSSLDG00000019958) #32	ENSSLDG00000019973 #33	ENSSLDG00000019996	ENSSLDG00000020004	ENSSLDG00000020017	ENSSLDG00000020042	ENSSLDG00000020052	ENSSLDG00000020071	ENSSLDG00000020124
Eupercaria	ANCESTRAL SPECIES	11	ENSGT01080000257344.a.b.b.b.b.b.b.a.a	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053	ENSGT01030000234828
Tetraodontidae	ANCESTRAL SPECIES																	ENSGT00940000153769.F.m #21
Tetraodon	MODERN SPECIES	26	ENSTNIG00000000850	ENSTNIG00000005938	ENSTNIG00000005937	ENSTNIG00000005935	SDC4 (ENSTNIG00000005934)	ENSTNIG00000005931	ENSTNIG00000005981	ENSTNIG00000005930	ENSTNIG00000005923	ENSTNIG00000004488	ENSTNIG00000005921	ENSTNIG00000005919	polr1h (ENSTNIG00000005917)	mgat1b (ENSTNIG00000000449)	vars2 (ENSTNIG00000005916)	ENSTNIG00000005915 #21	ENSTNIG00000005914	or91a1 (ENSTNIG00000001548)	USP48 (ENSTNIG00000005896)	ENSTNIG00000005895	sbf1 (ENSTNIG00000005889)	ENSTNIG00000005888	rcn3 (ENSTNIG00000005886)	rbbp5 (ENSTNIG00000005884)	hgh1 (ENSTNIG00000005883)	ENSTNIG00000005882	ENSTNIG00000001565	ENSTNIG00000005881	ENSTNIG00000005880	ENSTNIG00000005879	ENSTNIG00000003332
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000153770.l.b.a.a	ENSGT01030000234589.g.a.i.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053	ENSGT01030000234828
Ballan wrasse	MODERN SPECIES	333										ENSLBEG00000026109	SCGN (ENSLBEG00000026124) #10	ENSLBEG00000026159 #11	ENSLBEG00000026232 #12	ENSLBEG00000026248	ENPP2 (ENSLBEG00000026306) #17	COL14A1 (ENSLBEG00000026377) #21	ENSLBEG00000026421	ENSLBEG00000026438 #27	ZHX1 (ENSLBEG00000026447) #32	ENSLBEG00000026477 #33	ENSLBEG00000026543	ENSLBEG00000026572	ENSLBEG00000026579	ENSLBEG00000026591	ENSLBEG00000026617	ENSLBEG00000026629	ENSLBEG00000026642
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.h.a	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053	ENSGT01030000234828
Eupecaria_C	ANCESTRAL SPECIES	35	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	38	ENSGT00950000182805.a.a.b.a.c.b	ENSGT00390000013354.b.b	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.a	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691
European seabass	MODERN SPECIES	22	ENSDLAG00005031301	ENSDLAG00005027817	ENSDLAG00005027917	ENSDLAG00005019788	ENSDLAG00005022603	ENSDLAG00005029007	tatdn1 (ENSDLAG00005022618)	ENSDLAG00005022686	tmem65 (ENSDLAG00005030552)	ENSDLAG00005034324 #9	ENSDLAG00005022707 #10	ENSDLAG00005022745 #11	ENSDLAG00005023391 #12	ENSDLAG00005023407	ENSDLAG00005024033 #17	ENSDLAG00005024669 #21	ENSDLAG00005033870	ENSDLAG00005031690	ENSDLAG00005024949 #27	ENSDLAG00005024951	ENSDLAG00005024952 #32	ENSDLAG00005024963 #33	ENSDLAG00005032452	ENSDLAG00005019064	ENSDLAG00005029076	ENSDLAG00005027148	ENSDLAG00005016817	ENSDLAG00005003025	ENSDLAG00005015648	ENSDLAG00005025040	ENSDLAG00005025044
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005010978	pomca (ENSLCRG00005010975)	ENSLCRG00005010974	tatdn1 (ENSLCRG00005010955)	ndufb9 (ENSLCRG00005010954) #8	rnf139 (ENSLCRG00005010952)	tmem65 (ENSLCRG00005010949)	ENSLCRG00005010945 #9	ENSLCRG00005010942	ENSLCRG00005010944	SCGN (ENSLCRG00005010936) #10	ENSLCRG00005010091 #11	ENSLCRG00005010072 #12	ENSLCRG00005009376	ENPP2 (ENSLCRG00005006058) #17	COL14A1 (ENSLCRG00005004440) #21	ENSLCRG00005004391 #27	ZHX1 (ENSLCRG00005004389) #32	ENSLCRG00005003359 #33	ENSLCRG00005003331	ENSLCRG00005003329	mhc1zka (ENSLCRG00005003059)	ENSLCRG00005003054	ENSLCRG00005003052	ENSLCRG00005003049	ENSLCRG00005003038	ENSLCRG00005003034	ENSLCRG00005003032	VPS52 (ENSLCRG00005003024)	RING1 (ENSLCRG00005003019)	GRIK5 (ENSLCRG00005001385)
Gilthead seabream	MODERN SPECIES	17	tatdn1 (ENSSAUG00010000454)	rnf139 (ENSSAUG00010000424)	tmem65 (ENSSAUG00010000409)	MTSS1 (ENSSAUG00010000402) #9	ENSSAUG00010000396	ENSSAUG00010000390	ENSSAUG00010000385	ENSSAUG00010000380	SCGN (ENSSAUG00010000369) #10	ENSSAUG00010000240 #11	ENSSAUG00010000151	ENSSAUG00010011011 #12	ENSSAUG00010006023	ENPP2 (ENSSAUG00010001887) #17	ENSSAUG00010001578	COL14A1 (ENSSAUG00010001293) #21	ENSSAUG00010001267 #27	ZHX1 (ENSSAUG00010001262) #32	ENSSAUG00010001206	ENSSAUG00010001188	ENSSAUG00010001183	ENSSAUG00010001180	ENSSAUG00010001164	ENSSAUG00010001150	ENSSAUG00010001147	ENSSAUG00010001145	ENSSAUG00010001130	ENSSAUG00010001116	ENSSAUG00010001108	ENSSAUG00010001087	ENSSAUG00010001076
Perciformes	ANCESTRAL SPECIES	11	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.g	ENSGT01030000234589.g.a.i.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178829	ENSGT00940000178053	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Cottioidei	ANCESTRAL SPECIES	26	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.g	ENSGT01030000234589.g.a.i.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT01040000240796	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000165771	ENSGT00940000155188.A	ENSGT00940000155565.b	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00940000158852.e.b	ENSGT01100000263479.I.b	ENSGT00940000158641.a.a
Lumpfish	MODERN SPECIES	2	pomca (ENSCLMG00005003485)	ndufb9 (ENSCLMG00005003486) #8	tatdn1 (ENSCLMG00005003487)	rnf139 (ENSCLMG00005003601)	tmem65 (ENSCLMG00005003604)	ENSCLMG00005003607 #9	ENSCLMG00005003673	SCGN (ENSCLMG00005003677) #10	ENSCLMG00005003685 #11	ENSCLMG00005003739	ENSCLMG00005003740 #12	ENSCLMG00005003743	ENPP2 (ENSCLMG00005003759) #17	ENSCLMG00005003880	ENSCLMG00005003881	ENSCLMG00005003908 #21	ENSCLMG00005008269 #27	ZHX1 (ENSCLMG00005008271) #32	ENSCLMG00005008272 #33	mhc1zka (ENSCLMG00005008275)	ENSCLMG00005008284	ENSCLMG00005008288	ENSCLMG00005008328	VPS52 (ENSCLMG00005008332)	rps18 (ENSCLMG00005008608)	RING1 (ENSCLMG00005008611)	GRIK5 (ENSCLMG00005008613)	ENSCLMG00005008616	ENSCLMG00005008618	ENSCLMG00005008619	ENSCLMG00005008620
Stickleback	MODERN SPECIES	9	ENSGACG00000009530	ndufb9 (ENSGACG00000009532) #8	tatdn1 (ENSGACG00000009542)	rnf139 (ENSGACG00000009551)	tmem65 (ENSGACG00000009573)	ENSGACG00000009593 #9	ENSGACG00000009602	ENSGACG00000009606	SCGN (ENSGACG00000009609) #10	ENSGACG00000009643	ENSGACG00000009644 #11	ENSGACG00000009653	ENSGACG00000009659 #12	ENSGACG00000009662	ENPP2 (ENSGACG00000009688) #17	ENSGACG00000009702 #21	ENSGACG00000009725	ENSGACG00000009728	mhc1zka (ENSGACG00000009731)	ENSGACG00000009744	ENSGACG00000009746	ENSGACG00000009753	ENSGACG00000009760	ENSGACG00000009762	ENSGACG00000009763	ENSGACG00000009768	ENSGACG00000009770	VPS52 (ENSGACG00000009772)	rps18 (ENSGACG00000009814)	RING1 (ENSGACG00000009833)	GRIK5 (ENSGACG00000009862)
Perciformes_a	ANCESTRAL SPECIES	57				ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT00940000178053	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00940000158852.e.b
Channel bull blenny	MODERN SPECIES	2	rnf139 (ENSCGOG00000022026)	tmem65 (ENSCGOG00000022028)	MTSS1 (ENSCGOG00000022031) #9	SCGN (ENSCGOG00000022040) #10	ENSCGOG00000022045	ENSCGOG00000022047	ENSCGOG00000022048	ENSCGOG00000022050	SCGN (ENSCGOG00000022051) #10	ENSCGOG00000022052	SCGN (ENSCGOG00000022053) #10	ENSCGOG00000022074 #11	ENSCGOG00000022722 #12	ENSCGOG00000022723	ENPP2 (ENSCGOG00000022768) #17	COL14A1 (ENSCGOG00000023173) #21	ENSCGOG00000023242 #27	ZHX1 (ENSCGOG00000004070) #32	ENSCGOG00000004106 #33	mhc1zka (ENSCGOG00000004350)	ENSCGOG00000004418	ENSCGOG00000004421	ENSCGOG00000004424	ENSCGOG00000004430	ENSCGOG00000004436	ENSCGOG00000004515	ENSCGOG00000004518	VPS52 (ENSCGOG00000004553)	rps18 (ENSCGOG00000005081)	RING1 (ENSCGOG00000005085)	ENSCGOG00000005092
Pike perch	MODERN SPECIES	271																COL14A1 (ENSSLUG00000018494) #21	ENSSLUG00000018470 #27	ENSSLUG00000018466 #27
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT01030000234589.g.a.f	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.c.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815
Oryzias	ANCESTRAL SPECIES	24				ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000172892.a	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.y.a.a	ENSGT00940000177196.c	ENSGT01100000263531.A.y.a.b	ENSGT00940000177196.d	ENSGT01100000263531.A.y.b	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815
Oryzias_b	ANCESTRAL SPECIES	82		ENSGT01100000263476.B.b.b.a.b.b.b.b.b	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000172892.a	ENSGT00940000172892.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.z	ENSGT01100000263531.A.y.b.a.a	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Indian medaka	MODERN SPECIES	29	ENSOMEG00000013093	ENSOMEG00000013081	ENSOMEG00000013050	pomca (ENSOMEG00000013037)	ENSOMEG00000013011	ndufb9 (ENSOMEG00000012977) #8	tatdn1 (ENSOMEG00000012956)	rnf139 (ENSOMEG00000012924)	tmem65 (ENSOMEG00000012895)	MTSS1 (ENSOMEG00000012856) #9	SCGN (ENSOMEG00000012710) #10	ENSOMEG00000012672 #11	ENSOMEG00000012598 #12	ENSOMEG00000012534	ENPP2 (ENSOMEG00000012494) #17	COL14A1 (ENSOMEG00000012432) #21	ENSOMEG00000012375	ENSOMEG00000012346	ENSOMEG00000012312	ENSOMEG00000000312 #27	ZHX1 (ENSOMEG00000012265) #32	ENSOMEG00000012215 #33	ENSOMEG00000012165	ENSOMEG00000012131	ENSOMEG00000012095	ENSOMEG00000012053	ENSOMEG00000012041	ENSOMEG00000011999	ENSOMEG00000011906	ENSOMEG00000011846	ENSOMEG00000011823
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000006659	ENSOJAG00000006681	ENSOJAG00000006706	pomca (ENSOJAG00000006719)	ENSOJAG00000006730	ndufb9 (ENSOJAG00000006736) #8	rnf139 (ENSOJAG00000007077)	tmem65 (ENSOJAG00000007345)	MTSS1 (ENSOJAG00000007364) #9	SCGN (ENSOJAG00000007444) #10	CARMIL1 (ENSOJAG00000007588) #11	ENSOJAG00000009221	ENSOJAG00000009230 #12	ENSOJAG00000009354	ENPP2 (ENSOJAG00000010515) #17	COL14A1 (ENSOJAG00000011691) #21	ENSOJAG00000013254	ENSOJAG00000013265	ENSOJAG00000013274	ENSOJAG00000013302	ENSOJAG00000013336	ENSOJAG00000013348	ENSOJAG00000013362	ZHX2 (ENSOJAG00000013378) #27	ZHX1 (ENSOJAG00000013394) #32	ENSOJAG00000013418 #33	ENSOJAG00000013548	ENSOJAG00000013618	ENSOJAG00000013736	ENSOJAG00000013941	ENSOJAG00000013966
Oryzias_a	ANCESTRAL SPECIES	121				ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000027856	ENSORLG00000026932	ENSORLG00000030614	ENSORLG00000026284	ENSORLG00000000631	ndufb9 (ENSORLG00000000638) #8	tatdn1 (ENSORLG00000029003)	rnf139 (ENSORLG00000029345)	tmem65 (ENSORLG00000000647)	ENSORLG00000000662 #9	SCGN (ENSORLG00000023750) #10	ENSORLG00000000698 #11	opga (ENSORLG00000000705) #12	ENSORLG00000000744	ENSORLG00000000802 #17	COL14A1 (ENSORLG00000000896) #21	ENSORLG00000000968	ENSORLG00000026566	ENSORLG00000026029	ENSORLG00000024165	ENSORLG00000026188	ENSORLG00000001015	ENSORLG00000024417	ENSORLG00000026728	ENSORLG00000022006	ENSORLG00000030027	ENSORLG00000027279	ENSORLG00000024936	ENSORLG00000022930	ENSORLG00000024189	ENSORLG00000021904
Chinese medaka	MODERN SPECIES	172																COL14A1 (ENSOSIG00000000518) #21
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000153770.l.b.a.a	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.c.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691
Aplocheiloidei	ANCESTRAL SPECIES	9				ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A.z #17	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00940000158852.e.b
Mangrove rivulus	MODERN SPECIES	207	ENSKMAG00000008298	ndufb9 (ENSKMAG00000008275) #8	tatdn1 (ENSKMAG00000008222)	rnf139 (ENSKMAG00000008173)	tmem65 (ENSKMAG00000008147)	MTSS1 (ENSKMAG00000008089) #9	SCGN (ENSKMAG00000008057) #10	CARMIL1 (ENSKMAG00000008007) #11	ENSKMAG00000007963 #12	ENSKMAG00000007913 #12	ENSKMAG00000007820	ENSKMAG00000007627 #17	ENSKMAG00000007529	ENSKMAG00000007496	ENSKMAG00000007472	COL14A1 (ENSKMAG00000007357) #21	ENSKMAG00000007314 #27	ZHX1 (ENSKMAG00000007292) #32	ENSKMAG00000007241 #33	ENSKMAG00000007220	ENSKMAG00000007188	ENSKMAG00000007172	ENSKMAG00000007160	ENSKMAG00000007109	ENSKMAG00000007075	ENSKMAG00000006994
Turquoise killifish	MODERN SPECIES	1628	ENSNFUG00015020500	NDUFB9 (ENSNFUG00015020501) #8	tatdn1 (ENSNFUG00015020512)	RNF139 (ENSNFUG00015020833)	TMEM65 (ENSNFUG00015020837)	MTSS1 (ENSNFUG00015020861) #9	ENSNFUG00015020961	SCGN (ENSNFUG00015020962) #10	SCGN (ENSNFUG00015020965) #10	ENSNFUG00015020973 #11	ENSNFUG00015021025 #12	ENSNFUG00015021026 #12	ENSNFUG00015021081	ENSNFUG00015021846	ENPP2 (ENSNFUG00015021886) #17	COL14A1 (ENSNFUG00015022458) #21	ENSNFUG00015022588 #27	ENSNFUG00015022589	ZHX1 (ENSNFUG00015022591) #32	Nfu_g_1_010045 (ENSNFUG00015022604)	ENSNFUG00015014078	ENSNFUG00015014104	ENSNFUG00015014284	ENSNFUG00015014301	ENSNFUG00015014365	ENSNFUG00015014375	ENSNFUG00015014393	ATF6B (ENSNFUG00015014450)	BX572630.2 (ENSNFUG00015014597)	VPS52 (ENSNFUG00015014640)	rps18 (ENSNFUG00015015089)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT01080000257344.a.b.b.b.b.b.b.a.a.d	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b.p #12	ENSGT00940000155167.b.a.b.o #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00520000055667.i #20	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Platyfish	MODERN SPECIES	4	ndufb9 (ENSXMAG00000001240) #8	tatdn1 (ENSXMAG00000001248)	rnf139 (ENSXMAG00000001260)	tmem65 (ENSXMAG00000028955)	MTSS1 (ENSXMAG00000001289) #9	SCGN (ENSXMAG00000001316) #10	CARMIL1 (ENSXMAG00000001342) #11	ENSXMAG00000001405 #12	ENSXMAG00000022931 #12	ENSXMAG00000027067	ENSXMAG00000028282	ENPP2 (ENSXMAG00000001408) #17	ENSXMAG00000020941	ENSXMAG00000001491	ENSXMAG00000029287	COL14A1 (ENSXMAG00000001458) #21	ENSXMAG00000026781	ENSXMAG00000029908 #27	ZHX1 (ENSXMAG00000024212) #32	ENSXMAG00000001518 #33	ENSXMAG00000028100	ENSXMAG00000007599	ENSXMAG00000023139	ENSXMAG00000021850	ENSXMAG00000023160	ENSXMAG00000001541	ENSXMAG00000001543	ENSXMAG00000021621	ENSXMAG00000001548	ENSXMAG00000001560	VPS52 (ENSXMAG00000001565)
Poecilia	ANCESTRAL SPECIES	69	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b.p #12	ENSGT00940000155167.b.a.b.o #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00520000055667.i #20	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01060000248670	ENSGT00940000177196	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022
Guppy	MODERN SPECIES	441	ENSPREG00000021024	ENSPREG00000021078	ENSPREG00000021085	ENSPREG00000021101	pomca (ENSPREG00000021097)	ENSPREG00000021110	ndufb9 (ENSPREG00000021121) #8	tatdn1 (ENSPREG00000021141)	rnf139 (ENSPREG00000021181)	tmem65 (ENSPREG00000021200)	MTSS1 (ENSPREG00000021243) #9	SCGN (ENSPREG00000021353) #10	ENSPREG00000021380 #11	ENSPREG00000021481	ENPP2 (ENSPREG00000021543) #17	COL14A1 (ENSPREG00000021605) #21	ENSPREG00000021644	ENSPREG00000021652 #27	ZHX1 (ENSPREG00000021669) #32	ATAD2 (ENSPREG00000021688) #33	ENSPREG00000021708	ENSPREG00000021713	mhc1zea (ENSPREG00000021728)	ENSPREG00000021740	ENSPREG00000021745	ENSPREG00000021749	ENSPREG00000021758	ENSPREG00000021767	ENSPREG00000021782	ENSPREG00000021813	VPS52 (ENSPREG00000021834)
NAME_6	ANCESTRAL SPECIES	154	ENSGT00940000153770.l.b.a.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b.p #12	ENSGT00940000155167.b.a.b.o #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00520000055667.i #20	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.s.b	ENSGT00940000177196	ENSGT01100000263531.A.s.a	ENSGT01100000263531.A.t	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691
Amazon molly	MODERN SPECIES	485	ENSPFOG00000000747	pomca (ENSPFOG00000000757)	ENSPFOG00000000783	ndufb9 (ENSPFOG00000000844) #8	tatdn1 (ENSPFOG00000000928)	rnf139 (ENSPFOG00000001029)	tmem65 (ENSPFOG00000001120)	MTSS1 (ENSPFOG00000001250) #9	SCGN (ENSPFOG00000001412) #10	CARMIL1 (ENSPFOG00000001573) #11	ENSPFOG00000001835 #12	ENSPFOG00000001850 #12	ENSPFOG00000001997	ENPP2 (ENSPFOG00000002408) #17	ENSPFOG00000024352 #20	ENSPFOG00000002928 #21	ENSPFOG00000003757	ENSPFOG00000022790	ENSPFOG00000023898	ZHX2 (ENSPFOG00000003780) #27	ZHX1 (ENSPFOG00000003808) #32	ENSPFOG00000003921 #33	ENSPFOG00000004058	ENSPFOG00000004101 #33	ENSPFOG00000004282	ENSPFOG00000004327	ENSPFOG00000004380	ENSPFOG00000004409	ENSPFOG00000004851	ENSPFOG00000023829	ENSPFOG00000005015
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	402																ENSPLAG00000004255 #21	ENSPLAG00000004216 #27	ZHX1 (ENSPLAG00000004203) #32
Sailfin molly	MODERN SPECIES	1399												ENSPLAG00000010081 #12	ENSPLAG00000000223 #12	ENSPLAG00000009992	ENPP2 (ENSPLAG00000009788) #17	ENSPLAG00000009725 #21	cbr1 (ENSPLAG00000009692)	cbr1 (ENSPLAG00000009524)
NAME_4	ANCESTRAL SPECIES	220	ENSGT00940000153770.k.a	ENSGT00940000153094	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21
Mummichog	MODERN SPECIES	964																COL14A1 (ENSFHEG00000003644) #21
Sheepshead minnow	MODERN SPECIES	224	ENSCVAG00000002365	ENSCVAG00000002371	ndufb9 (ENSCVAG00000002379) #8	tatdn1 (ENSCVAG00000002395)	rnf139 (ENSCVAG00000002402)	tmem65 (ENSCVAG00000002408)	MTSS1 (ENSCVAG00000002469) #9	SCGN (ENSCVAG00000002483) #10	ENSCVAG00000002508 #11	ENSCVAG00000002512 #12	ENSCVAG00000002521 #12	ENSCVAG00000002535	ENSCVAG00000002542	ENPP2 (ENSCVAG00000002583) #17	ENSCVAG00000002592	COL14A1 (ENSCVAG00000002622) #21
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828	ENSGT00390000008815	ENSGT00390000012691	ENSGT00940000161022	ENSGT00940000158852.e.b
Cichlidae	ANCESTRAL SPECIES	7	ENSGT01000000214413.b.a.b.a.b	ENSGT01030000234575.c.a.a.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT01060000248670	ENSGT01100000263531.A.m.a.a	ENSGT00940000177196	ENSGT01100000263531.A.m.a.b	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT01030000234575.c.a.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT00940000177196	ENSGT01100000263531.A.m.a.b.a.a	ENSGT01060000248670	ENSGT01100000263531.A.m.a.a.c	ENSGT01100000263531.A.m.a.b.a.b	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT01030000234575.c.a.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT01030000234575.c.a.a.a.a.a.b.a.a.f	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT01060000248670	ENSGT01100000263531.A.m.a.b.a.b	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828
Haplochromini	ANCESTRAL SPECIES	5	ENSGT01030000234575.c.a.a.b	ENSGT01040000240400.c.a.b.a.b.a.a.b.a.b.b.k.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000172892	ENSGT01030000234575.c.a.a.a.a.a.b.a.a.f	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT01060000248670	ENSGT01100000263531.A.m.a.b.a.b.a	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000177573	ENSGT00940000155565.b	ENSGT00940000180480	ENSGT00940000155188.A	ENSGT00940000160798
Burton s mouthbrooder	MODERN SPECIES	697						pomca (ENSHBUG00000005565)	ENSHBUG00000005575	ndufb9 (ENSHBUG00000005589) #8	tmem65 (ENSHBUG00000005620)	ENSHBUG00000005657 #9	SCGN (ENSHBUG00000005681) #10	ENSHBUG00000005731 #11	ENSHBUG00000005744 #12	ENSHBUG00000005765	ENPP2 (ENSHBUG00000005834) #17	ENSHBUG00000005891 #21	ENSHBUG00000005906
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT01030000234575.c.a.a.b	ENSGT00940000176860.g.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT01030000234575.c.a.a.a.a.a.b.a.a.f	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT01100000263531.A.m.a.b.a.a.a	ENSGT01100000263531.A.m.a.b.a.b.a	ENSGT01060000248670.e.a.a	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828.d	ENSGT00390000008815
P. nyererei	MODERN SPECIES	634				pomca (ENSPNYG00000023716)	ENSPNYG00000023714	ndufb9 (ENSPNYG00000023713) #8	tatdn1 (ENSPNYG00000023712)	tmem65 (ENSPNYG00000023711)	MTSS1 (ENSPNYG00000023710) #9	SCGN (ENSPNYG00000023709) #10	ENSPNYG00000023708 #11	ENSPNYG00000023707 #12	ENSPNYG00000023705	ENPP2 (ENSPNYG00000023702) #17	ENSPNYG00000023700	ENSPNYG00000023699 #21
Haplochromini_B	ANCESTRAL SPECIES	75	ENSGT01030000234589.g.a.e.a.e.a.a.a.c.b	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.a.b.a.a.a.a.a.a.a.b.a.a.a	ENSGT01080000257344.a.b.b.b.b.b.a.a.a.a.b.a.a.b.a.b.b.a.a.b.b.b	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b #12	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT01030000235041.D	ENSGT01030000234575.c.a.a.a.a.a.b.a.a.f	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A.m.b	ENSGT01100000263531.A.m.a.b.a.a.a	ENSGT01100000263531.A.m.a.b.a.b.a	ENSGT01060000248670.e.a.a	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798	ENSGT01030000234828.d
Eastern happy	MODERN SPECIES	13	ENSACLG00000012955	ENSACLG00000012952	ENSACLG00000012944	pomca (ENSACLG00000012942)	ENSACLG00000012922	ndufb9 (ENSACLG00000012910) #8	tatdn1 (ENSACLG00000012879)	rnf139 (ENSACLG00000012835)	tmem65 (ENSACLG00000012814)	MTSS1 (ENSACLG00000012669) #9	SCGN (ENSACLG00000012647) #10	ENSACLG00000012592 #11	ENSACLG00000012568 #12	ENSACLG00000012456	ENPP2 (ENSACLG00000012318) #17	COL14A1 (ENSACLG00000012136) #21	ENSACLG00000012113	ENSACLG00000012103	ENSACLG00000011981	ENSACLG00000011942	ENSACLG00000011860	ENSACLG00000011734	ENSACLG00000011723 #27	ZHX1 (ENSACLG00000011563) #32	ENSACLG00000011528 #33	ENSACLG00000011515	ENSACLG00000011505	ENSACLG00000011500	ENSACLG00000011225	ENSACLG00000011220	ENSACLG00000011215
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005027084	ENSMZEG00005027083	pomca (ENSMZEG00005027076)	ENSMZEG00005027075	ndufb9 (ENSMZEG00005027074) #8	tatdn1 (ENSMZEG00005027072)	ENSMZEG00005027071	rnf139 (ENSMZEG00005027070)	tmem65 (ENSMZEG00005027069)	MTSS1 (ENSMZEG00005027068) #9	SCGN (ENSMZEG00005027067) #10	ENSMZEG00005027065 #11	ENSMZEG00005027063 #12	ENSMZEG00005027061	ENPP2 (ENSMZEG00005027057) #17	COL14A1 (ENSMZEG00005027050) #21	ENSMZEG00005027047	ENSMZEG00005027046 #27	ZHX1 (ENSMZEG00005027044) #32	ENSMZEG00005027041 #33	ENSMZEG00005027038	ENSMZEG00005027036	ENSMZEG00005027035	ENSMZEG00005027033	ENSMZEG00005027031	ENSMZEG00005026977	ENSMZEG00005026972	ENSMZEG00005026970	ENSMZEG00005026969	ENSMZEG00005026967	ENSMZEG00005026965
Lyretail cichlid	MODERN SPECIES	515						ENSNBRG00000000665	pomca (ENSNBRG00000000535)	ndufb9 (ENSNBRG00000000456) #8	tatdn1 (ENSNBRG00000000350)	rnf139 (ENSNBRG00000000281)	SCGN (ENSNBRG00000000265) #10	SCGN (ENSNBRG00000023341) #10	ENSNBRG00000023310 #12	ENSNBRG00000023296	ENPP2 (ENSNBRG00000023272) #17	ENSNBRG00000023255 #21
Nile tilapia	MODERN SPECIES	13	ENSONIG00000033168	ENSONIG00000032775	POMC (ENSONIG00000039325)	ENSONIG00000007236	ndufb9 (ENSONIG00000007229) #8	tatdn1 (ENSONIG00000007228)	rnf139 (ENSONIG00000007225)	tmem65 (ENSONIG00000033594)	MTSS1 (ENSONIG00000007217) #9	SCGN (ENSONIG00000007210) #10	ENSONIG00000007204 #11	ENSONIG00000007203 #12	ENSONIG00000007202	ENSONIG00000042700	ENPP2 (ENSONIG00000007198) #17	COL14A1 (ENSONIG00000007189) #21	ENSONIG00000028532	ENSONIG00000038283	ENSONIG00000036120	ENSONIG00000031788	ENSONIG00000028014	ENSONIG00000035659	ENSONIG00000038044	ENSONIG00000031871	ENSONIG00000032867	ENSONIG00000036719	ENSONIG00000042042	ENSONIG00000035007	ENSONIG00000030351	ENSONIG00000005063	ENSONIG00000005071
Midas cichlid	MODERN SPECIES	795												ENSACIG00000012010 #12	ENSACIG00000012031	ENSACIG00000012076	ENPP2 (ENSACIG00000012098) #17	COL14A1 (ENSACIG00000012236) #21	ENSACIG00000012330
Pomacentridae	ANCESTRAL SPECIES	134	ENSGT00940000153770.l.b.b	ENSGT01030000234589.g.a.e.b.e.b	ENSGT01100000263549.j.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000162635	ENSGT00940000156034.b	ENSGT00940000155778.A #17	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A	ENSGT00940000160798
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	972																ENSSPAG00000021776 #21	ENSSPAG00000021802	ENSSPAG00000021812 #27
Bicolor damselfish	MODERN SPECIES	788												ENSSPAG00000022640 #11	ENSSPAG00000022635	ENSSPAG00000022568	ENPP2 (ENSSPAG00000022548) #17	ENSSPAG00000022538 #21
Pomacentridae_A	ANCESTRAL SPECIES	130	ENSGT01100000263549.j.a.r	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000156034.b.f	ENSGT00940000162635	ENSGT00940000156034.b.e	ENSGT00940000155778.A #17	ENSGT00940000177497	ENSGT00940000153769.F.m #21	ENSGT00940000167252.c.b	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A
Spiny chromis	MODERN SPECIES	1513																ENSAPOG00000020193 #21	ENSAPOG00000020139	ENSAPOG00000020128 #27
Amphiprion	ANCESTRAL SPECIES	159	ENSGT01030000234589.g.a.e.b.e.b.a	ENSGT00390000016811.g.g.b	ENSGT00940000164041.b.b	ENSGT00390000005809 #8	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.c	ENSGT00950000183156.a.b.b.b.b.a.c.b #9	ENSGT00940000155112.B.b #11	ENSGT00940000156034.b.f	ENSGT00940000162635	ENSGT00940000156034.b.e	ENSGT00940000155778.A #17	ENSGT00940000154348.c.b.b.b	ENSGT00940000167252.c.b	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00550000074694.a.l #33	ENSGT01100000263531.A	ENSGT00940000176878	ENSGT00940000165771	ENSGT00940000155565.b	ENSGT00940000155188.A
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000010789	ENSAPEG00000010755	pomca (ENSAPEG00000010741)	ENSAPEG00000010721	ndufb9 (ENSAPEG00000010695) #8	tatdn1 (ENSAPEG00000010649)	rnf139 (ENSAPEG00000010585)	tmem65 (ENSAPEG00000010572)	MTSS1 (ENSAPEG00000010513) #9	ENSAPEG00000010384 #11	ENSAPEG00000010371	ENSAPEG00000010146	ENPP2 (ENSAPEG00000010026) #17	ENSAPEG00000010007	ENSAPEG00000009965	COL14A1 (ENSAPEG00000009812) #21	ZHX2 (ENSAPEG00000009793) #27	ZHX1 (ENSAPEG00000009778) #32	ENSAPEG00000009760 #33	mhc1zka (ENSAPEG00000009740)	ENSAPEG00000009728	ENSAPEG00000009716	ENSAPEG00000009644	ENSAPEG00000009610	ENSAPEG00000009600	GABBR1 (ENSAPEG00000009422)	SH3BP5L (ENSAPEG00000009386)	gtf2h4 (ENSAPEG00000009332)	arhgef1a (ENSAPEG00000009255)	ENSAPEG00000009210	txnipa (ENSAPEG00000009185)
Clown anemonefish	MODERN SPECIES	1276										ENSAOCG00000009277 #11	ENSAOCG00000009306	ENSAOCG00000009328	ENPP2 (ENSAOCG00000009410) #17	ENSAOCG00000009432	ENSAOCG00000009441	COL14A1 (ENSAOCG00000009568) #21	ZHX2 (ENSAOCG00000009595) #27	ZHX1 (ENSAOCG00000009609) #32
Osteoglossiformes	ANCESTRAL SPECIES	165	ENSGT00940000161470.a.a	ENSGT00940000155952	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00940000158932	ENSGT00940000156272	ENSGT00950000183156.a.b.b.b.b.a.b #9	ENSGT00950000183108.a.d #10	ENSGT00940000155112.B.b #11	ENSGT00940000155167.b.a.b.b #12	ENSGT00940000155167.b.b.d #13	ENSGT00940000156034.b	ENSGT00940000155778.A.m #17	ENSGT00520000055667.d #20	ENSGT00940000153769.F.m #21	ENSGT00950000182893.a.a.a.b.d #27	ENSGT00530000063156.b #28	ENSGT00950000182893.a.a.a.a.a #32	ENSGT00390000014398	ENSGT00910000144277
Asian bonytongue	MODERN SPECIES	15	lpcat1 (ENSSFOG00015001378)	nrsn1l (ENSSFOG00015029000)	sox4a (ENSSFOG00015025792)	e2f3 (ENSSFOG00015001281)	srfbp1 (ENSSFOG00015001274)	tmem65 (ENSSFOG00015030564)	rnf139 (ENSSFOG00015025836)	tatdn1 (ENSSFOG00015001193)	MTSS1 (ENSSFOG00015001122) #9	SCGN (ENSSFOG00015001097) #10	CARMIL1 (ENSSFOG00015001001) #11	ENSSFOG00015000990 #12	ENSSFOG00015000986 #13	ENSSFOG00015000567	ENPP2 (ENSSFOG00015000561) #17	COL14A1 (ENSSFOG00015000554) #21	ZHX2 (ENSSFOG00015024975) #27	derl1 (ENSSFOG00015000474) #28	ZHX1 (ENSSFOG00015018886) #32	wdyhv1 (ENSSFOG00015018923)	psma2b (ENSSFOG00015026284)	sdha (ENSSFOG00015018938)	pdia7 (ENSSFOG00015018989)	ENSSFOG00015019023	msto1 (ENSSFOG00015019076)	ssr2 (ENSSFOG00015019095)	ENSSFOG00015019119	tpm3 (ENSSFOG00015019143)	u2af2b (ENSSFOG00015019182)	cnot3b (ENSSFOG00015019203)	ENSSFOG00015032529
P. kingsleyae	MODERN SPECIES	104	sox4a (ENSPKIG00000024271)	ENSPKIG00000024276	e2f3 (ENSPKIG00000024283)	ENSPKIG00000024291	tmem65 (ENSPKIG00000024302)	rnf139 (ENSPKIG00000024320)	tatdn1 (ENSPKIG00000024331)	MTSS1 (ENSPKIG00000024344) #9	SCGN (ENSPKIG00000024357) #10	CARMIL1 (ENSPKIG00000024396) #11	ENSPKIG00000024447 #12	ENSPKIG00000024462 #13	ENSPKIG00000024511	ENPP2 (ENSPKIG00000024612) #17	deptor (ENSPKIG00000024652) #20	COL14A1 (ENSPKIG00000024680) #21	ZHX2 (ENSPKIG00000024705) #27	derl1 (ENSPKIG00000024714) #28	ZHX1 (ENSPKIG00000024726) #32	wdyhv1 (ENSPKIG00000024731)	psma2b (ENSPKIG00000024738)	sdha (ENSPKIG00000024753)	rnf144b (ENSPKIG00000025604)	ENSPKIG00000025596	oxr1b (ENSPKIG00000025595)	ZFPM2 (ENSPKIG00000025607)	lrp12 (ENSPKIG00000025594)	ENSPKIG00000000007	mc5ra (ENSPKIG00000000075)	rnmt (ENSPKIG00000000087)	fam210aa (ENSPKIG00000000112)
Reedfish	MODERN SPECIES	4	ENSECRG00000020752	ENSECRG00000020736	FSBP (ENSECRG00000020721)	RAD54B (ENSECRG00000020690)	gem (ENSECRG00000020673)	cdh17 (ENSECRG00000020580)	pdp1 (ENSECRG00000020531)	TMEM67 (ENSECRG00000020455)	ENSECRG00000020409	mrpl13 (ENSECRG00000020390) #23	ENSECRG00000020349 #24	ENSECRG00000020108	ENPP2 (ENSECRG00000019935) #17	taf2 (ENSECRG00000018498) #18	dscc1 (ENSECRG00000018326) #19	COL14A1 (ENSECRG00000018223) #21	ENSECRG00000018176	grhl2b (ENSECRG00000018079)	ncalda (ENSECRG00000018019)	ENSECRG00000017996	atp6v1c1b (ENSECRG00000017967)	ENSECRG00000017911	rnf19a (ENSECRG00000017857)	MBOAT1 (ENSECRG00000017722)	DPY19L4 (ENSECRG00000017558)	gbp (ENSECRG00000017526)	ENSECRG00000017486	ENSECRG00000017427	ENSECRG00000017399	ENSECRG00000017359	zgc:136493 (ENSECRG00000017292)
Sarcopterygii	ANCESTRAL SPECIES	96	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.a #12	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Amniota	ANCESTRAL SPECIES	3	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Sauria	ANCESTRAL SPECIES		ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Archosauria	ANCESTRAL SPECIES		ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Aves	ANCESTRAL SPECIES	9	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Neognathae	ANCESTRAL SPECIES		ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Passeriformes	ANCESTRAL SPECIES		ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a.c #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a.c #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a.c #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a.c #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Common canary	MODERN SPECIES		EIF3H (ENSSCAG00000006473)	UTP23 (ENSSCAG00000006504)	RAD21 (ENSSCAG00000006560)	SLC30A8 (ENSSCAG00000006593)	MED30 (ENSSCAG00000006754)	EXT1 (ENSSCAG00000006832)	SAMD12 (ENSSCAG00000006901)	TNFRSF11B (ENSSCAG00000006906) #13	COLEC10 (ENSSCAG00000006912) #14	MAL2 (ENSSCAG00000006916) #15	CCN3 (ENSSCAG00000006932) #16	ENPP2 (ENSSCAG00000006961) #17	TAF2 (ENSSCAG00000007001) #18	DSCC1 (ENSSCAG00000007024) #19	DEPTOR (ENSSCAG00000007032) #20	COL14A1 (ENSSCAG00000007044) #21	MRPL13 (ENSSCAG00000007067) #23	MTBP (ENSSCAG00000007075) #24	SNTB1 (ENSSCAG00000007099) #25	HAS2 (ENSSCAG00000007205) #26	ZHX2 (ENSSCAG00000007235) #27	DERL1 (ENSSCAG00000007247) #28	ENSSCAG00000007256	TBC1D31 (ENSSCAG00000007260) #29	FAM83A (ENSSCAG00000007263) #30	C8orf76 (ENSSCAG00000007265) #31	ZHX1 (ENSSCAG00000007271) #32	ENSSCAG00000007297 #33	NTAQ1 (ENSSCAG00000007331)	FBXO32 (ENSSCAG00000007348)	KLHL38 (ENSSCAG00000007412)
Zebra finch	MODERN SPECIES	12	UTP23 (ENSTGUG00000019640)	RAD21 (ENSTGUG00000012319)	SLC30A8 (ENSTGUG00000012324)	MED30 (ENSTGUG00000012326)	EXT1 (ENSTGUG00000012328)	SAMD12 (ENSTGUG00000020404)	ENSTGUG00000024839	TNFRSF11B (ENSTGUG00000012341) #13	COLEC10 (ENSTGUG00000019400) #14	MAL2 (ENSTGUG00000028155) #15	CCN3 (ENSTGUG00000012349) #16	ENPP2 (ENSTGUG00000012352) #17	TAF2 (ENSTGUG00000012376) #18	DSCC1 (ENSTGUG00000012379) #19	DEPTOR (ENSTGUG00000028876) #20	COL14A1 (ENSTGUG00000012390) #21	MRPL13 (ENSTGUG00000012400) #23	MTBP (ENSTGUG00000012401) #24	SNTB1 (ENSTGUG00000012405) #25	HAS2 (ENSTGUG00000012411) #26	ZHX2 (ENSTGUG00000012413) #27	DERL1 (ENSTGUG00000027312) #28	TBC1D31 (ENSTGUG00000012420) #29	FAM83A (ENSTGUG00000012428) #30	C8orf76 (ENSTGUG00000012429) #31	ZHX1 (ENSTGUG00000020208) #32	ENSTGUG00000012435 #33	NTAQ1 (ENSTGUG00000020251)	FBXO32 (ENSTGUG00000020587)	KLHL38 (ENSTGUG00000012445)	ANXA13 (ENSTGUG00000012446)
Medium ground finch	MODERN SPECIES	24	EIF3H (ENSGFOG00000013387)	UTP23 (ENSGFOG00000013389)	RAD21 (ENSGFOG00000013390)	SLC30A8 (ENSGFOG00000013393)	MED30 (ENSGFOG00000013421)	EXT1 (ENSGFOG00000013424)	SAMD12 (ENSGFOG00000013441)	TNFRSF11B (ENSGFOG00000006001) #13	COLEC10 (ENSGFOG00000006007) #14	MAL2 (ENSGFOG00000006011) #15	ENSGFOG00000006018 #16	ENPP2 (ENSGFOG00000006026) #17	TAF2 (ENSGFOG00000006063) #18	DSCC1 (ENSGFOG00000006083) #19	DEPTOR (ENSGFOG00000006099) #20	COL14A1 (ENSGFOG00000006186) #21	MRPL13 (ENSGFOG00000009023) #23	MTBP (ENSGFOG00000009030) #24	SNTB1 (ENSGFOG00000009047) #25	HAS2 (ENSGFOG00000009053) #26	ZHX2 (ENSGFOG00000009056) #27	DERL1 (ENSGFOG00000009060) #28	TBC1D31 (ENSGFOG00000009072) #29	FAM83A (ENSGFOG00000009097) #30	ENSGFOG00000009113 #31	ZHX1 (ENSGFOG00000009116) #32	ENSGFOG00000009118 #33	NTAQ1 (ENSGFOG00000009129)	FBXO32 (ENSGFOG00000009137)	KLHL38 (ENSGFOG00000009149)	ANXA13 (ENSGFOG00000009157)
Flycatcher	MODERN SPECIES	11	UTP23 (ENSFALG00000002299)	RAD21 (ENSFALG00000002300)	SLC30A8 (ENSFALG00000002307)	MED30 (ENSFALG00000002314)	EXT1 (ENSFALG00000002316)	SAMD12 (ENSFALG00000023400)	TNFRSF11B (ENSFALG00000023816) #13	COLEC10 (ENSFALG00000002321) #14	MAL2 (ENSFALG00000025444) #15	ENSFALG00000002328 #16	ENSFALG00000024646	ENPP2 (ENSFALG00000002338) #17	TAF2 (ENSFALG00000002356) #18	DSCC1 (ENSFALG00000002371) #19	DEPTOR (ENSFALG00000002385) #20	COL14A1 (ENSFALG00000002405) #21	MRPL13 (ENSFALG00000002422) #23	MTBP (ENSFALG00000002426) #24	SNTB1 (ENSFALG00000002431) #25	HAS2 (ENSFALG00000023275) #26	ZHX2 (ENSFALG00000014375) #27	DERL1 (ENSFALG00000002439) #28	TBC1D31 (ENSFALG00000002446) #29	FAM83A (ENSFALG00000026846) #30	C8orf76 (ENSFALG00000002452) #31	ZHX1 (ENSFALG00000014380) #32	ENSFALG00000002454 #33	NTAQ1 (ENSFALG00000002461)	FBXO32 (ENSFALG00000002463)	KLHL38 (ENSFALG00000002470)	ANXA13 (ENSFALG00000002480)
Great tit	MODERN SPECIES	11	EIF3H (ENSPMJG00000011103)	UTP23 (ENSPMJG00000011108)	RAD21 (ENSPMJG00000011110)	SLC30A8 (ENSPMJG00000011127)	MED30 (ENSPMJG00000011131)	EXT1 (ENSPMJG00000011143)	SAMD12 (ENSPMJG00000011242)	TNFRSF11B (ENSPMJG00000011245) #13	COLEC10 (ENSPMJG00000011246) #14	MAL2 (ENSPMJG00000011247) #15	CCN3 (ENSPMJG00000011248) #16	ENPP2 (ENSPMJG00000011250) #17	TAF2 (ENSPMJG00000011251) #18	DSCC1 (ENSPMJG00000011252) #19	DEPTOR (ENSPMJG00000011253) #20	COL14A1 (ENSPMJG00000011254) #21	MRPL13 (ENSPMJG00000011255) #23	MTBP (ENSPMJG00000011256) #24	SNTB1 (ENSPMJG00000011259) #25	HAS2 (ENSPMJG00000011263) #26	ZHX2 (ENSPMJG00000011266) #27	DERL1 (ENSPMJG00000011267) #28	TBC1D31 (ENSPMJG00000011268) #29	FAM83A (ENSPMJG00000011269) #30	C8orf76 (ENSPMJG00000011270) #31	ZHX1 (ENSPMJG00000011271) #32	ENSPMJG00000011272 #33	ENSPMJG00000011273	NTAQ1 (ENSPMJG00000011274)	FBXO32 (ENSPMJG00000011275)	KLHL38 (ENSPMJG00000011276)
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Kakapo	MODERN SPECIES		EIF3H (ENSSHBG00005017442)	UTP23 (ENSSHBG00005017441)	RAD21 (ENSSHBG00005017439)	SLC30A8 (ENSSHBG00005017438)	MED30 (ENSSHBG00005017437)	EXT1 (ENSSHBG00005017434)	SAMD12 (ENSSHBG00005017431)	TNFRSF11B (ENSSHBG00005017429) #13	COLEC10 (ENSSHBG00005017428) #14	MAL2 (ENSSHBG00005017426) #15	CCN3 (ENSSHBG00005017425) #16	ENPP2 (ENSSHBG00005017421) #17	TAF2 (ENSSHBG00005017401) #18	DSCC1 (ENSSHBG00005017393) #19	DEPTOR (ENSSHBG00005017391) #20	COL14A1 (ENSSHBG00005007883) #21	MRPL13 (ENSSHBG00005007181) #23	MTBP (ENSSHBG00005007149) #24	ENSSHBG00005007123	SNTB1 (ENSSHBG00005007105) #25	HAS2 (ENSSHBG00005007093) #26	ZHX2 (ENSSHBG00005007081) #27	DERL1 (ENSSHBG00005007049) #28	TBC1D31 (ENSSHBG00005006859) #29	FAM83A (ENSSHBG00005006756) #30	C8orf76 (ENSSHBG00005006740) #31	ZHX1 (ENSSHBG00005006727) #32	ATAD2 (ENSSHBG00005006654) #33	NTAQ1 (ENSSHBG00005006607)	FBXO32 (ENSSHBG00005006594)	KLHL38 (ENSSHBG00005006574)
Golden eagle	MODERN SPECIES	20	UTP23 (ENSACCG00020002438)	RAD21 (ENSACCG00020002426)	SLC30A8 (ENSACCG00020002375)	MED30 (ENSACCG00020002336)	EXT1 (ENSACCG00020002320)	SAMD12 (ENSACCG00020002288)	TNFRSF11B (ENSACCG00020002257) #13	COLEC10 (ENSACCG00020002237) #14	MAL2 (ENSACCG00020002229) #15	CCN3 (ENSACCG00020002208) #16	ENPP2 (ENSACCG00020002176) #17	TAF2 (ENSACCG00020002105) #18	DSCC1 (ENSACCG00020002068) #19	DEPTOR (ENSACCG00020002043) #20	ENSACCG00020002025	COL14A1 (ENSACCG00020001981) #21	MRPL13 (ENSACCG00020001937) #23	MTBP (ENSACCG00020001912) #24	SNTB1 (ENSACCG00020001889) #25	HAS2 (ENSACCG00020001877) #26	ZHX2 (ENSACCG00020001865) #27	DERL1 (ENSACCG00020001854) #28	TBC1D31 (ENSACCG00020001803) #29	FAM83A (ENSACCG00020001760) #30	C8orf76 (ENSACCG00020001744) #31	ZHX1 (ENSACCG00020001729) #32	ATAD2 (ENSACCG00020001708) #33	NTAQ1 (ENSACCG00020001696)	ENSACCG00020001690	FBXO32 (ENSACCG00020001680)	KLHL38 (ENSACCG00020001670)
Galloanserae	ANCESTRAL SPECIES		ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Anatidae	ANCESTRAL SPECIES	3	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Pink-footed goose	MODERN SPECIES	16	EIF3H (ENSABRG00000014153)	UTP23 (ENSABRG00000014148)	RAD21 (ENSABRG00000014139)	SLC30A8 (ENSABRG00000013730)	MED30 (ENSABRG00000013696)	EXT1 (ENSABRG00000013681)	SAMD12 (ENSABRG00000013658)	TNFRSF11B (ENSABRG00000013638) #13	COLEC10 (ENSABRG00000013622) #14	MAL2 (ENSABRG00000013618) #15	CCN3 (ENSABRG00000013614) #16	ENPP2 (ENSABRG00000013594) #17	TAF2 (ENSABRG00000012639) #18	DSCC1 (ENSABRG00000012562) #19	DEPTOR (ENSABRG00000012480) #20	COL14A1 (ENSABRG00000010379) #21	MRPL13 (ENSABRG00000010204) #23	MTBP (ENSABRG00000010183) #24	SNTB1 (ENSABRG00000010173) #25	HAS2 (ENSABRG00000010154) #26	ZHX2 (ENSABRG00000010138) #27	DERL1 (ENSABRG00000010125) #28	TBC1D31 (ENSABRG00000010073) #29	FAM83A (ENSABRG00000010062) #30	C8orf76 (ENSABRG00000010056) #31	ZHX1 (ENSABRG00000010052) #32	ATAD2 (ENSABRG00000009964) #33	NTAQ1 (ENSABRG00000009933)	FBXO32 (ENSABRG00000009922)	KLHL38 (ENSABRG00000009907)	ANXA13 (ENSABRG00000009827)
Duck	MODERN SPECIES	10	OSGIN2 (ENSAPLG00000006564)	ENSAPLG00000006772	RIPK2 (ENSAPLG00000006833)	SLC30A8 (ENSAPLG00000014913)	MED30 (ENSAPLG00000014888)	EXT1 (ENSAPLG00000009944)	SAMD12 (ENSAPLG00000009933)	TNFRSF11B (ENSAPLG00000009749) #13	COLEC10 (ENSAPLG00000019811) #14	MAL2 (ENSAPLG00000018801) #15	CCN3 (ENSAPLG00000006728) #16	ENPP2 (ENSAPLG00000006897) #17	TAF2 (ENSAPLG00000007663) #18	DSCC1 (ENSAPLG00000008065) #19	DEPTOR (ENSAPLG00000008162) #20	COL14A1 (ENSAPLG00000008273) #21	MRPL13 (ENSAPLG00000019065) #23	MTBP (ENSAPLG00000005442) #24	SNTB1 (ENSAPLG00000005833) #25	HAS2 (ENSAPLG00000006075) #26	DERL1 (ENSAPLG00000026389) #28	TBC1D31 (ENSAPLG00000010985) #29	FAM83A (ENSAPLG00000010979) #30	C8orf76 (ENSAPLG00000010962) #31	ZHX1 (ENSAPLG00000010954) #32	ATAD2 (ENSAPLG00000023462) #33	FBXO32 (ENSAPLG00000005288)	KLHL38 (ENSAPLG00000005471)	ANXA13 (ENSAPLG00000005494)	FAM91A1 (ENSAPLG00000005727)	FER1L6 (ENSAPLG00000006119)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Japanese quail	MODERN SPECIES	11	EIF3H (ENSCJPG00005005287)	UTP23 (ENSCJPG00005005296)	RAD21 (ENSCJPG00005005297)	SLC30A8 (ENSCJPG00005005326)	MED30 (ENSCJPG00005005330)	EXT1 (ENSCJPG00005005336)	SAMD12 (ENSCJPG00005005368)	TNFRSF11B (ENSCJPG00005005378) #13	COLEC10 (ENSCJPG00005005383) #14	MAL2 (ENSCJPG00005005387) #15	CCN3 (ENSCJPG00005005391) #16	ENPP2 (ENSCJPG00005005395) #17	TAF2 (ENSCJPG00005005440) #18	DSCC1 (ENSCJPG00005005449) #19	DEPTOR (ENSCJPG00005005492) #20	COL14A1 (ENSCJPG00005005501) #21	MRPL13 (ENSCJPG00005005563) #23	MTBP (ENSCJPG00005005568) #24	SNTB1 (ENSCJPG00005005608) #25	HAS2 (ENSCJPG00005005631) #26	ZHX2 (ENSCJPG00005005698) #27	DERL1 (ENSCJPG00005005699) #28	TBC1D31 (ENSCJPG00005005701) #29	FAM83A (ENSCJPG00005005727) #30	C8orf76 (ENSCJPG00005005730) #31	ZHX1 (ENSCJPG00005005732) #32	ENSCJPG00005005734	FBXO32 (ENSCJPG00005005736)	KLHL38 (ENSCJPG00005005737)	ANXA13 (ENSCJPG00005005856)	FAM91A1 (ENSCJPG00005005939)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Chicken	MODERN SPECIES	11	EIF3H (ENSGALG00010007984)	UTP23 (ENSGALG00010009025)	RAD21 (ENSGALG00010009038)	SLC30A8 (ENSGALG00010009052)	MED30 (ENSGALG00010009083)	EXT1 (ENSGALG00010009091)	SAMD12 (ENSGALG00010009163)	TNFRSF11B (ENSGALG00010009219) #13	COLEC10 (ENSGALG00010009263) #14	MAL2 (ENSGALG00010009273) #15	CCN3 (ENSGALG00010009284) #16	ENPP2 (ENSGALG00010009344) #17	TAF2 (ENSGALG00010009363) #18	DSCC1 (ENSGALG00010009368) #19	DEPTOR (ENSGALG00010009387) #20	COL14A1 (ENSGALG00010009416) #21	MRPL13 (ENSGALG00010009463) #23	MTBP (ENSGALG00010009479) #24	SNTB1 (ENSGALG00010009490) #25	HAS2 (ENSGALG00010009506) #26	ZHX2 (ENSGALG00010009601) #27	DERL1 (ENSGALG00010009612) #28	TBC1D31 (ENSGALG00010009634) #29	FAM83A (ENSGALG00010009655) #30	C8orf76 (ENSGALG00010009730) #31	ZHX1 (ENSGALG00010009721) #32	ATAD2 (ENSGALG00010008023) #33	WDYHV1 (ENSGALG00010008238)	FBXO32 (ENSGALG00010008245)	KLHL38 (ENSGALG00010008250)	ANXA13 (ENSGALG00010008286)
Turkey	MODERN SPECIES	22	UTP23 (ENSMGAG00000021793)	RAD21 (ENSMGAG00000012475)	ENSMGAG00000022496	SLC30A8 (ENSMGAG00000012488)	MED30 (ENSMGAG00000012493)	EXT1 (ENSMGAG00000012494)	SAMD12 (ENSMGAG00000012500)	TNFRSF11B (ENSMGAG00000012502) #13	COLEC10 (ENSMGAG00000012507) #14	MAL2 (ENSMGAG00000018976) #15	CCN3 (ENSMGAG00000012516) #16	ENPP2 (ENSMGAG00000012517) #17	TAF2 (ENSMGAG00000012541) #18	DSCC1 (ENSMGAG00000012551) #19	DEPTOR (ENSMGAG00000012556) #20	COL14A1 (ENSMGAG00000012567) #21	MRPL13 (ENSMGAG00000012570) #23	MTBP (ENSMGAG00000012572) #24	SNTB1 (ENSMGAG00000012578) #25	HAS2 (ENSMGAG00000012580) #26	ZHX2 (ENSMGAG00000015867) #27	DERL1 (ENSMGAG00000012586) #28	TBC1D31 (ENSMGAG00000012590) #29	FAM83A (ENSMGAG00000012606) #30	C8orf76 (ENSMGAG00000012607) #31	ZHX1 (ENSMGAG00000012584) #32	ATAD2 (ENSMGAG00000012599) #33	NTAQ1 (ENSMGAG00000012605)	FBXO32 (ENSMGAG00000012610)	KLHL38 (ENSMGAG00000012617)	ANXA13 (ENSMGAG00000012623)
African ostrich	MODERN SPECIES	201							ENSSCUG00000001721	TNFRSF11B (ENSSCUG00000001720) #13	COLEC10 (ENSSCUG00000001717) #14	MAL2 (ENSSCUG00000001715) #15	CCN3 (ENSSCUG00000001714) #16	ENPP2 (ENSSCUG00000001710) #17	TAF2 (ENSSCUG00000001697) #18	DSCC1 (ENSSCUG00000001681) #19	DEPTOR (ENSSCUG00000001672) #20	COL14A1 (ENSSCUG00000001660) #21	MRPL13 (ENSSCUG00000001654) #23	MTBP (ENSSCUG00000001649) #24	SNTB1 (ENSSCUG00000001644) #25	HAS2 (ENSSCUG00000001637) #26	ZHX2 (ENSSCUG00000001635) #27	DERL1 (ENSSCUG00000001633) #28	TBC1D31 (ENSSCUG00000001629) #29	FAM83A (ENSSCUG00000001626) #30	C8orf76 (ENSSCUG00000001624) #31	ZHX1 (ENSSCUG00000001622) #32	ATAD2 (ENSSCUG00000001619) #33	NTAQ1 (ENSSCUG00000001618)	FBXO32 (ENSSCUG00000001615)	KLHL38 (ENSSCUG00000001613)	ANXA13 (ENSSCUG00000001611)
Australian saltwater crocodile	MODERN SPECIES		EIF3H (ENSCPRG00005007395)	UTP23 (ENSCPRG00005007401)	RAD21 (ENSCPRG00005007439)	SLC30A8 (ENSCPRG00005007473)	MED30 (ENSCPRG00005007497)	EXT1 (ENSCPRG00005007604)	SAMD12 (ENSCPRG00005007632)	TNFRSF11B (ENSCPRG00005007645) #13	COLEC10 (ENSCPRG00005007648) #14	MAL2 (ENSCPRG00005007650) #15	CCN3 (ENSCPRG00005007670) #16	ENPP2 (ENSCPRG00005007674) #17	TAF2 (ENSCPRG00005007727) #18	DSCC1 (ENSCPRG00005007746) #19	DEPTOR (ENSCPRG00005007749) #20	COL14A1 (ENSCPRG00005007882) #21	MRPL13 (ENSCPRG00005008591) #23	MTBP (ENSCPRG00005008616) #24	SNTB1 (ENSCPRG00005008688) #25	HAS2 (ENSCPRG00005008703) #26	ZHX2 (ENSCPRG00005008723) #27	DERL1 (ENSCPRG00005008725) #28	TBC1D31 (ENSCPRG00005008728) #29	FAM83A (ENSCPRG00005008738) #30	C8orf76 (ENSCPRG00005008741) #31	ZHX1 (ENSCPRG00005008743) #32	ATAD2 (ENSCPRG00005008758) #33	NTAQ1 (ENSCPRG00005008775)	FBXO32 (ENSCPRG00005008832)	KLHL38 (ENSCPRG00005008841)	ANXA13 (ENSCPRG00005008888)
Cryptodira	ANCESTRAL SPECIES	22	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Testudinoidea	ANCESTRAL SPECIES	16	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Testudinidae	ANCESTRAL SPECIES	27	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515.w #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000153195.A.z.b	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Abingdon island giant tortoise	MODERN SPECIES	533							TNFRSF11B (ENSCABG00000004285) #13	COLEC10 (ENSCABG00000004287) #14	MAL2 (ENSCABG00000004289) #15	CCN3 (ENSCABG00000004292) #16	ENPP2 (ENSCABG00000004296) #17	ENSCABG00000004445	TAF2 (ENSCABG00000004448) #18	DSCC1 (ENSCABG00000004452) #19	DEPTOR (ENSCABG00000004458) #20	COL14A1 (ENSCABG00000004697) #21	ENSCABG00000004705 #23	MTBP (ENSCABG00000004707) #24	SNTB1 (ENSCABG00000004712) #25	ENSCABG00000004713	HAS2 (ENSCABG00000004715) #26
Goode s thornscrub tortoise	MODERN SPECIES	11	UTP23 (ENSGEVG00005012878)	RAD21 (ENSGEVG00005012905)	SLC30A8 (ENSGEVG00005013234)	MED30 (ENSGEVG00005014534)	ENSGEVG00005014559	SAMD12 (ENSGEVG00005014576)	TNFRSF11B (ENSGEVG00005014658) #13	COLEC10 (ENSGEVG00005014709) #14	MAL2 (ENSGEVG00005014766) #15	ENSGEVG00005014813 #16	ENSGEVG00005014858 #17	ENSGEVG00005014967 #17	TAF2 (ENSGEVG00005015050) #18	DSCC1 (ENSGEVG00005015100) #19	DEPTOR (ENSGEVG00005015134) #20	COL14A1 (ENSGEVG00005015258) #21	ENSGEVG00005015504 #23	MTBP (ENSGEVG00005015538) #24	SNTB1 (ENSGEVG00005015590) #25	ENSGEVG00005015684	HAS2 (ENSGEVG00005015714) #26	ZHX2 (ENSGEVG00005015762) #27	DERL1 (ENSGEVG00005015778) #28	TBC1D31 (ENSGEVG00005015798) #29	FAM83A (ENSGEVG00005015843) #30	C8orf76 (ENSGEVG00005015921) #31	ZHX1 (ENSGEVG00005015944) #32	ATAD2 (ENSGEVG00005015981) #33	NTAQ1 (ENSGEVG00005016028)	FBXO32 (ENSGEVG00005016057)	KLHL38 (ENSGEVG00005016080)
Emydidae	ANCESTRAL SPECIES	15	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
painted turtle	MODERN SPECIES	773	POGLUT2 (ENSCPBG00000015411)	BIVM (ENSCPBG00000015409)	ENSCPBG00000015404	SLC10A2 (ENSCPBG00000015396)	TNFRSF11B (ENSCPBG00000015390) #13	COLEC10 (ENSCPBG00000015387) #14	MAL2 (ENSCPBG00000015384) #15	ENSCPBG00000015382	CCN3 (ENSCPBG00000015378) #16	ENSCPBG00000015377	ENPP2 (ENSCPBG00000015362) #17	TAF2 (ENSCPBG00000015342) #18	DSCC1 (ENSCPBG00000015337) #19	ENSCPBG00000015335	DEPTOR (ENSCPBG00000015331) #20	COL14A1 (ENSCPBG00000015298) #21	MRPL13 (ENSCPBG00000015289) #23	MTBP (ENSCPBG00000015262) #24	SNTB1 (ENSCPBG00000015255) #25
Three-toed box turtle	MODERN SPECIES	24	UTP23 (ENSTMTG00000003549)	RAD21 (ENSTMTG00000003563)	SLC30A8 (ENSTMTG00000003718)	MED30 (ENSTMTG00000005191)	EXT1 (ENSTMTG00000005215)	ENSTMTG00000005266	SAMD12 (ENSTMTG00000005280)	TNFRSF11B (ENSTMTG00000005294) #13	COLEC10 (ENSTMTG00000005311) #14	MAL2 (ENSTMTG00000005322) #15	CCN3 (ENSTMTG00000011467) #16	ENPP2 (ENSTMTG00000011540) #17	TAF2 (ENSTMTG00000012591) #18	DSCC1 (ENSTMTG00000012646) #19	DEPTOR (ENSTMTG00000012669) #20	COL14A1 (ENSTMTG00000012701) #21	MRPL13 (ENSTMTG00000012804) #23	MTBP (ENSTMTG00000012851) #24	SNTB1 (ENSTMTG00000013194) #25	HAS2 (ENSTMTG00000013200) #26	ZHX2 (ENSTMTG00000013210) #27	DERL1 (ENSTMTG00000013223) #28	TBC1D31 (ENSTMTG00000013246) #29	FAM83A (ENSTMTG00000013382) #30	ZHX1 (ENSTMTG00000013390) #32	ATAD2 (ENSTMTG00000013494) #33	NTAQ1 (ENSTMTG00000014890)	FBXO32 (ENSTMTG00000014904)	KLHL38 (ENSTMTG00000014921)	ANXA13 (ENSTMTG00000014929)	FAM91A1 (ENSTMTG00000014954)
Chinese turtle	MODERN SPECIES	2212														DSCC1 (ENSPSIG00000008865) #19	DEPTOR (ENSPSIG00000008808) #20	COL14A1 (ENSPSIG00000008034) #21	MRPL13 (ENSPSIG00000008016) #23	MTBP (ENSPSIG00000007852) #24	SNTB1 (ENSPSIG00000007782) #25	HAS2 (ENSPSIG00000007729) #26	ENSPSIG00000001261	ZHX2 (ENSPSIG00000007720) #27	DERL1 (ENSPSIG00000007619) #28	TBC1D31 (ENSPSIG00000006871) #29	FAM83A (ENSPSIG00000006791) #30	C8orf76 (ENSPSIG00000006726) #31	ZHX1 (ENSPSIG00000006703) #32	ATAD2 (ENSPSIG00000006454) #33	NTAQ1 (ENSPSIG00000006436)	FBXO32 (ENSPSIG00000005814)	KLHL38 (ENSPSIG00000005796)
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Lizard	DUPLICATION
Lizard	MODERN SPECIES	883				EXT1 (ENSACAG00000008346)	ENSACAG00000045314	ENSACAG00000037085	SAMD12 (ENSACAG00000008442)	TNFRSF11B (ENSACAG00000008445) #13	COLEC10 (ENSACAG00000036693) #14	MAL2 (ENSACAG00000037275) #15	CCN3 (ENSACAG00000008505) #16	ENPP2 (ENSACAG00000008571) #17	TAF2 (ENSACAG00000008878) #18	DSCC1 (ENSACAG00000009002) #19	DEPTOR (ENSACAG00000009022) #20	ENSACAG00000009044 #21	MRPL13 (ENSACAG00000009255) #23	MTBP (ENSACAG00000009271) #24	SNTB1 (ENSACAG00000009289) #25	ENSACAG00000024213 #26
Lizard	MODERN SPECIES	1877																ENSACAG00000010530 #21
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00390000009543	ENSGT00940000159069
Elapidae_a	ANCESTRAL SPECIES	44	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A.c #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.a #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00390000009543	ENSGT00940000159069
Blue-lipped sea krait	MODERN SPECIES	860																COL14A1 (ENSLLTG00000002128) #21
Acanthophiinae	ANCESTRAL SPECIES	15	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A.c #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667.a #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00390000009543	ENSGT00940000159069
Eastern brown snake	MODERN SPECIES	22	UTP23 (ENSPTXG00000001644)	RAD21 (ENSPTXG00000001645)	ENSPTXG00000001647	MED30 (ENSPTXG00000001648)	EXT1 (ENSPTXG00000001649)	ENSPTXG00000001664	SAMD12 (ENSPTXG00000001665)	TNFRSF11B (ENSPTXG00000001666) #13	COLEC10 (ENSPTXG00000001668) #14	MAL2 (ENSPTXG00000001669) #15	CCN3 (ENSPTXG00000001670) #16	ENPP2 (ENSPTXG00000001674) #17	TAF2 (ENSPTXG00000001683) #18	DSCC1 (ENSPTXG00000001687) #19	DEPTOR (ENSPTXG00000001708) #20	COL14A1 (ENSPTXG00000000581) #21	MRPL13 (ENSPTXG00000004145) #23	MTBP (ENSPTXG00000004147) #24	SNTB1 (ENSPTXG00000004149) #25	HAS2 (ENSPTXG00000004150) #26	ZHX2 (ENSPTXG00000004151) #27	DERL1 (ENSPTXG00000004152) #28	TBC1D31 (ENSPTXG00000004153) #29	C8orf76 (ENSPTXG00000004163) #31	ZHX1 (ENSPTXG00000004164) #32	ATAD2 (ENSPTXG00000004165) #33	NTAQ1 (ENSPTXG00000004168)	FBXO32 (ENSPTXG00000004169)	KLHL38 (ENSPTXG00000004171)	FAM91A1 (ENSPTXG00000004172)	FER1L6 (ENSPTXG00000004720)
Mainland tiger snake	MODERN SPECIES	5	RAD21 (ENSNSUG00000012281)	ENSNSUG00000012280	MED30 (ENSNSUG00000012279)	EXT1 (ENSNSUG00000012277)	ENSNSUG00000012274	SAMD12 (ENSNSUG00000012273)	TNFRSF11B (ENSNSUG00000012271) #13	ENSNSUG00000012270	COLEC10 (ENSNSUG00000012269) #14	MAL2 (ENSNSUG00000012268) #15	CCN3 (ENSNSUG00000012267) #16	ENPP2 (ENSNSUG00000011236) #17	TAF2 (ENSNSUG00000011231) #18	DSCC1 (ENSNSUG00000011209) #19	ENSNSUG00000011206 #20	COL14A1 (ENSNSUG00000011195) #21	MRPL13 (ENSNSUG00000011194) #23	MTBP (ENSNSUG00000011193) #24	SNTB1 (ENSNSUG00000011190) #25	HAS2 (ENSNSUG00000011187) #26
Indian cobra	MODERN SPECIES	2	UTP23 (ENSNNAG00000016488)	RAD21 (ENSNNAG00000016498)	MED30 (ENSNNAG00000016515)	EXT1 (ENSNNAG00000016519)	ENSNNAG00000016534	SAMD12 (ENSNNAG00000016540)	TNFRSF11B (ENSNNAG00000016552) #13	ENSNNAG00000016565	COLEC10 (ENSNNAG00000016568) #14	MAL2 (ENSNNAG00000016575) #15	CCN3 (ENSNNAG00000016578) #16	ENPP2 (ENSNNAG00000016591) #17	TAF2 (ENSNNAG00000016720) #18	DSCC1 (ENSNNAG00000017285) #19	DEPTOR (ENSNNAG00000017296) #20	COL14A1 (ENSNNAG00000017354) #21	MRPL13 (ENSNNAG00000017721) #23	MTBP (ENSNNAG00000017726) #24	SNTB1 (ENSNNAG00000017733) #25	HAS2 (ENSNNAG00000017742) #26	ZHX2 (ENSNNAG00000017744) #27	DERL1 (ENSNNAG00000017747) #28	TBC1D31 (ENSNNAG00000017755) #29	C8orf76 (ENSNNAG00000017784) #31	ZHX1 (ENSNNAG00000017785) #32	ATAD2 (ENSNNAG00000017787) #33	NTAQ1 (ENSNNAG00000017796)	FBXO32 (ENSNNAG00000017804)	KLHL38 (ENSNNAG00000017824)	FAM91A1 (ENSNNAG00000017828)	ENSNNAG00000017834
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000154655.a	ENSGT01060000249299	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Common wall lizard	MODERN SPECIES	15	RAD21 (ENSPMRG00000019260)	ENSPMRG00000019256	SLC30A8 (ENSPMRG00000019199)	MED30 (ENSPMRG00000019184)	EXT1 (ENSPMRG00000019170)	SAMD12 (ENSPMRG00000019144)	TNFRSF11B (ENSPMRG00000019605) #13	COLEC10 (ENSPMRG00000019595) #14	MAL2 (ENSPMRG00000019583) #15	CCN3 (ENSPMRG00000019577) #16	ENPP2 (ENSPMRG00000019517) #17	TAF2 (ENSPMRG00000019449) #18	DSCC1 (ENSPMRG00000019424) #19	DEPTOR (ENSPMRG00000019395) #20	ENSPMRG00000019380	COL14A1 (ENSPMRG00000018442) #21	MRPL13 (ENSPMRG00000018208) #23	MTBP (ENSPMRG00000018177) #24	SNTB1 (ENSPMRG00000018165) #25	HAS2 (ENSPMRG00000018156) #26	ENSPMRG00000018148	ZHX2 (ENSPMRG00000018142) #27	DERL1 (ENSPMRG00000018137) #28	TBC1D31 (ENSPMRG00000018123) #29	FAM83A (ENSPMRG00000018110) #30	C8orf76 (ENSPMRG00000018097) #31	ZHX1 (ENSPMRG00000018094) #32	ATAD2 (ENSPMRG00000018082) #33	NTAQ1 (ENSPMRG00000018074)	FBXO32 (ENSPMRG00000018066)	KLHL38 (ENSPMRG00000018059)
Argentine black and white tegu	MODERN SPECIES	13	RAD21 (ENSSMRG00000021424)	ENSSMRG00000021425	SLC30A8 (ENSSMRG00000021426)	MED30 (ENSSMRG00000021444)	EXT1 (ENSSMRG00000021445)	ENSSMRG00000021448	SAMD12 (ENSSMRG00000021449)	TNFRSF11B (ENSSMRG00000021450) #13	COLEC10 (ENSSMRG00000021451) #14	MAL2 (ENSSMRG00000021452) #15	CCN3 (ENSSMRG00000021453) #16	ENPP2 (ENSSMRG00000021454) #17	TAF2 (ENSSMRG00000021455) #18	ENSSMRG00000021456 #19	DEPTOR (ENSSMRG00000021457) #20	COL14A1 (ENSSMRG00000021458) #21	MRPL13 (ENSSMRG00000021459) #23	MTBP (ENSSMRG00000021460) #24	SNTB1 (ENSSMRG00000021461) #25	HAS2 (ENSSMRG00000021463) #26	ZHX2 (ENSSMRG00000021465) #27	DERL1 (ENSSMRG00000021466) #28	TBC1D31 (ENSSMRG00000021467) #29	FAM83A (ENSSMRG00000021468) #30	C8orf76 (ENSSMRG00000021469) #31	ZHX1 (ENSSMRG00000021470) #32	ATAD2 (ENSSMRG00000021472) #33	NTAQ1 (ENSSMRG00000021473)	FBXO32 (ENSSMRG00000021474)	KLHL38 (ENSSMRG00000021475)	ANXA13 (ENSSMRG00000021476)
tuatara	MODERN SPECIES	667												ENPP2 (ENSSPUG00000008607) #17	TAF2 (ENSSPUG00000008556) #18	DSCC1 (ENSSPUG00000008525) #19	DEPTOR (ENSSPUG00000008498) #20	COL14A1 (ENSSPUG00000008459) #21	MRPL13 (ENSSPUG00000008445) #23	MTBP (ENSSPUG00000008344) #24	SNTB1 (ENSSPUG00000008308) #25
Mammalia	ANCESTRAL SPECIES	3	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Theria	ANCESTRAL SPECIES	7	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01030000235077	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000155238.b	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	TNFRSF11B (ENSMODG00000004064) #13	COLEC10 (ENSMODG00000049233) #14	ENSMODG00000004037	MAL2 (ENSMODG00000004011) #15	ENSMODG00000004003	CCN3 (ENSMODG00000003994) #16	ENPP2 (ENSMODG00000003977) #17	ENSMODG00000036390	ENSMODG00000044265 #17	TAF2 (ENSMODG00000003943) #18	ENSMODG00000045886	ENSMODG00000040574	DSCC1 (ENSMODG00000003856) #19	DEPTOR (ENSMODG00000025626) #20	ENSMODG00000003690 #21	ENSMODG00000048911 #21	MRPL13 (ENSMODG00000040540) #23	MTBP (ENSMODG00000002290) #24	SNTB1 (ENSMODG00000002274) #25	HAS2 (ENSMODG00000046665) #26	ENSMODG00000027410	ENSMODG00000024451	ZHX2 (ENSMODG00000002184) #27	DERL1 (ENSMODG00000002179) #28	TBC1D31 (ENSMODG00000002163) #29	FAM83A (ENSMODG00000002050) #30	C8orf76 (ENSMODG00000002040) #31	ZHX1 (ENSMODG00000002035) #32	ATAD2 (ENSMODG00000002027) #33	ENSMODG00000001981	FBXO32 (ENSMODG00000001972)
Opossum	MODERN SPECIES	2	ENSMODG00000024468	TNFRSF11B (ENSMODG00000004064) #13	COLEC10 (ENSMODG00000049233) #14	ENSMODG00000004037	MAL2 (ENSMODG00000004011) #15	ENSMODG00000004003	CCN3 (ENSMODG00000003994) #16	ENPP2 (ENSMODG00000003977) #17	ENSMODG00000036390	ENSMODG00000044265 #17	TAF2 (ENSMODG00000003943) #18	ENSMODG00000045886	ENSMODG00000040574	DSCC1 (ENSMODG00000003856) #19	DEPTOR (ENSMODG00000025626) #20	ENSMODG00000003690 #21	ENSMODG00000048911 #21	MRPL13 (ENSMODG00000040540) #23	MTBP (ENSMODG00000002290) #24	SNTB1 (ENSMODG00000002274) #25	HAS2 (ENSMODG00000046665) #26	ENSMODG00000027410	ENSMODG00000024451	ZHX2 (ENSMODG00000002184) #27	DERL1 (ENSMODG00000002179) #28	TBC1D31 (ENSMODG00000002163) #29	FAM83A (ENSMODG00000002050) #30	C8orf76 (ENSMODG00000002040) #31	ZHX1 (ENSMODG00000002035) #32	ATAD2 (ENSMODG00000002027) #33	ENSMODG00000001981
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT01030000235077	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000155238.b	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000007870.b.b	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Diprotodontia	ANCESTRAL SPECIES	36	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000155238.b	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000007870.b.b	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Diprotodontia_a	ANCESTRAL SPECIES	35	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000155238.b	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000007870.b.b	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
koala	MODERN SPECIES	156																COL14A1 (ENSPCIG00000019503) #21	MRPL13 (ENSPCIG00000019489) #23	MTBP (ENSPCIG00000019484) #24	SNTB1 (ENSPCIG00000015033) #25	ENSPCIG00000013546	ENSPCIG00000016492	HAS2 (ENSPCIG00000016493) #26	ZHX2 (ENSPCIG00000020296) #27	DERL1 (ENSPCIG00000020299) #28	ENSPCIG00000032976	TBC1D31 (ENSPCIG00000013915) #29	FAM83A (ENSPCIG00000013926) #30	C8orf76 (ENSPCIG00000013930) #31	ZHX1 (ENSPCIG00000013933) #32	ATAD2 (ENSPCIG00000013943) #33	NTAQ1 (ENSPCIG00000014010)
Common wonbat	MODERN SPECIES	651	EIF3H (ENSVURG00010017172)	UTP23 (ENSVURG00010017165)	RAD21 (ENSVURG00010017148)	MED30 (ENSVURG00010017131)	EXT1 (ENSVURG00010017119)	SAMD12 (ENSVURG00010017096)	TNFRSF11B (ENSVURG00010017074) #13	COLEC10 (ENSVURG00010017061) #14	ENSVURG00010017012	MAL2 (ENSVURG00010017007) #15	CCN3 (ENSVURG00010016997) #16	ENPP2 (ENSVURG00010016906) #17	TAF2 (ENSVURG00010016853) #18	DSCC1 (ENSVURG00010016837) #19	DEPTOR (ENSVURG00010016809) #20	COL14A1 (ENSVURG00010016740) #21	MRPL13 (ENSVURG00010016720) #23	MTBP (ENSVURG00010016679) #24	SNTB1 (ENSVURG00010016668) #25	ENSVURG00010016659	HAS2 (ENSVURG00010016650) #26	ZHX2 (ENSVURG00010016623) #27	DERL1 (ENSVURG00010016600) #28	TBC1D31 (ENSVURG00010016552) #29	FAM83A (ENSVURG00010016540) #30	C8orf76 (ENSVURG00010016532) #31	ZHX1 (ENSVURG00010016525) #32	ATAD2 (ENSVURG00010016513) #33	NTAQ1 (ENSVURG00010016499)	FBXO32 (ENSVURG00010016457)	KLHL38 (ENSVURG00010016442)
Wallaby	MODERN SPECIES	9416																COL14A1 (ENSMEUG00000001044) #21
Tasmanian devil	MODERN SPECIES		UTP23 (ENSSHAG00000024119)	RAD21 (ENSSHAG00000015624)	ENSSHAG00000028668	MED30 (ENSSHAG00000004816)	EXT1 (ENSSHAG00000010065)	SAMD12 (ENSSHAG00000012647)	TNFRSF11B (ENSSHAG00000015911) #13	COLEC10 (ENSSHAG00000022071) #14	MAL2 (ENSSHAG00000030082) #15	ENSSHAG00000016675	CCN3 (ENSSHAG00000017261) #16	ENSSHAG00000017449 #17	TAF2 (ENSSHAG00000017807) #18	DSCC1 (ENSSHAG00000017891) #19	DEPTOR (ENSSHAG00000017931) #20	COL14A1 (ENSSHAG00000018289) #21	MRPL13 (ENSSHAG00000021347) #23	MTBP (ENSSHAG00000018541) #24	SNTB1 (ENSSHAG00000021252) #25	ENSSHAG00000003459	HAS2 (ENSSHAG00000008736) #26	ZHX2 (ENSSHAG00000011260) #27	DERL1 (ENSSHAG00000024390) #28	TBC1D31 (ENSSHAG00000012277) #29	FAM83A (ENSSHAG00000012870) #30	ZHX1 (ENSSHAG00000022132) #32	C8orf76 (ENSSHAG00000013082) #31	ATAD2 (ENSSHAG00000013547) #33	NTAQ1 (ENSSHAG00000022443)	FBXO32 (ENSSHAG00000014341)	KLHL38 (ENSSHAG00000014912)
Eutheria	ANCESTRAL SPECIES	15	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Boreoeutheria	ANCESTRAL SPECIES	19	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912
Laurasiatheria	ANCESTRAL SPECIES	18	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912
Laurasiatheria_a	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912
Artiodactyla	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Suina	ANCESTRAL SPECIES	26	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Pig	MODERN SPECIES	12	RAD21 (ENSSSCG00000006014)	AARD (ENSSSCG00000006013)	SLC30A8 (ENSSSCG00000006011)	MED30 (ENSSSCG00000033577)	ENSSSCG00000006008	EXT1 (ENSSSCG00000006009)	SAMD12 (ENSSSCG00000036553)	TNFRSF11B (ENSSSCG00000027762) #13	COLEC10 (ENSSSCG00000029324) #14	MAL2 (ENSSSCG00000006003) #15	CCN3 (ENSSSCG00000006002) #16	ENPP2 (ENSSSCG00000006001) #17	TAF2 (ENSSSCG00000006000) #18	DSCC1 (ENSSSCG00000047247) #19	DEPTOR (ENSSSCG00000049630) #20	COL14A1 (ENSSSCG00000005997) #21	MRPL13 (ENSSSCG00000005996) #23	ENSSSCG00000051469	MTBP (ENSSSCG00000005995) #24	SNTB1 (ENSSSCG00000005994) #25	ENSSSCG00000049444	ENSSSCG00000013683	HAS2 (ENSSSCG00000005992) #26	SHAS2 (ENSSSCG00000057079) #26	ZHX2 (ENSSSCG00000021586) #27	DERL1 (ENSSSCG00000056684) #28	TBC1D31 (ENSSSCG00000005987) #29	FAM83A (ENSSSCG00000005986) #30	C8orf76 (ENSSSCG00000021744) #31	ZHX1 (ENSSSCG00000005984) #32	ATAD2 (ENSSSCG00000005983) #33
Chacoan peccary	MODERN SPECIES	114	UTP23 (ENSCWAG00000012797)	RAD21 (ENSCWAG00000012835)	AARD (ENSCWAG00000012938)	SLC30A8 (ENSCWAG00000012976)	MED30 (ENSCWAG00000013119)	EXT1 (ENSCWAG00000013172)	SAMD12 (ENSCWAG00000013276)	TNFRSF11B (ENSCWAG00000013355) #13	COLEC10 (ENSCWAG00000013419) #14	MAL2 (ENSCWAG00000013493) #15	CCN3 (ENSCWAG00000013537) #16	ENPP2 (ENSCWAG00000013660) #17	TAF2 (ENSCWAG00000014485) #18	DSCC1 (ENSCWAG00000014558) #19	DEPTOR (ENSCWAG00000014662) #20	COL14A1 (ENSCWAG00000014836) #21	MRPL13 (ENSCWAG00000015112) #23	MTBP (ENSCWAG00000015155) #24	SNTB1 (ENSCWAG00000015327) #25	HAS2 (ENSCWAG00000015390) #26	ENSCWAG00000015428 #26	ENSCWAG00000015461	ZHX2 (ENSCWAG00000015481) #27	DERL1 (ENSCWAG00000015504) #28	TBC1D31 (ENSCWAG00000015719) #29	C8orf76 (ENSCWAG00000016392) #31	FAM83A (ENSCWAG00000016430) #30	ATAD2 (ENSCWAG00000016495) #33	NTAQ1 (ENSCWAG00000016564)	FBXO32 (ENSCWAG00000016716)	KLHL38 (ENSCWAG00000016842)
Artiodactyla_a	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Artiodactyla_b	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Cetacea	ANCESTRAL SPECIES	17	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Odontoceti	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Odontoceti_a	ANCESTRAL SPECIES	17	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514.e #15	ENSGT00940000159514.f #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Dolphin	MODERN SPECIES	2473																COL14A1 (ENSTTRG00000005893) #21	MRPL13 (ENSTTRG00000005939) #23	MTBP (ENSTTRG00000005941) #24	SNTB1 (ENSTTRG00000005946) #25
Odontoceti_b	ANCESTRAL SPECIES	19	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514.e #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Monodontidae	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514.e #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Narwhal	MODERN SPECIES	300	AARD (ENSMMNG00015010400)	SLC30A8 (ENSMMNG00015010374)	MED30 (ENSMMNG00015010355)	ENSMMNG00015010341	EXT1 (ENSMMNG00015010321)	ENSMMNG00015010297	SAMD12 (ENSMMNG00015010283)	TNFRSF11B (ENSMMNG00015010272) #13	COLEC10 (ENSMMNG00015010262) #14	ENSMMNG00015010250 #15	CCN3 (ENSMMNG00015010239) #16	ENPP2 (ENSMMNG00015010161) #17	TAF2 (ENSMMNG00015010098) #18	DSCC1 (ENSMMNG00015010076) #19	DEPTOR (ENSMMNG00015010025) #20	COL14A1 (ENSMMNG00015009928) #21	MRPL13 (ENSMMNG00015009896) #23	MTBP (ENSMMNG00015009876) #24	SNTB1 (ENSMMNG00015009861) #25	ENSMMNG00015009845	ENSMMNG00015009829	ZHX2 (ENSMMNG00015009763) #27	DERL1 (ENSMMNG00015009742) #28	TBC1D31 (ENSMMNG00015009691) #29	FAM83A (ENSMMNG00015009671) #30	C8orf76 (ENSMMNG00015009653) #31	ZHX1 (ENSMMNG00015009643) #32	ATAD2 (ENSMMNG00015009608) #33	NTAQ1 (ENSMMNG00015009570)	FBXO32 (ENSMMNG00015009534)	KLHL38 (ENSMMNG00015009499)
Beluga whale	MODERN SPECIES	55	AARD (ENSDLEG00000009719)	SLC30A8 (ENSDLEG00000009731)	MED30 (ENSDLEG00000009745)	EXT1 (ENSDLEG00000009759)	ENSDLEG00000009819	SAMD12 (ENSDLEG00000009828)	ENSDLEG00000009857	COLEC10 (ENSDLEG00000009888) #14	TNFRSF11B (ENSDLEG00000009932) #13	MAL2 (ENSDLEG00000009959) #15	NOV (ENSDLEG00000009992) #16	ENPP2 (ENSDLEG00000010065) #17	TAF2 (ENSDLEG00000010419) #18	DSCC1 (ENSDLEG00000010516) #19	DEPTOR (ENSDLEG00000010538) #20	COL14A1 (ENSDLEG00000010612) #21	MRPL13 (ENSDLEG00000010887) #23	MTBP (ENSDLEG00000010940) #24	SNTB1 (ENSDLEG00000010982) #25
Vaquita	MODERN SPECIES	8	UTP23 (ENSPSNG00000007276)	RAD21 (ENSPSNG00000007330)	AARD (ENSPSNG00000007427)	SLC30A8 (ENSPSNG00000007461)	MED30 (ENSPSNG00000007574)	EXT1 (ENSPSNG00000007631)	SAMD12 (ENSPSNG00000007740)	TNFRSF11B (ENSPSNG00000007923) #13	COLEC10 (ENSPSNG00000007960) #14	MAL2 (ENSPSNG00000008002) #15	CCN3 (ENSPSNG00000008043) #16	ENPP2 (ENSPSNG00000008163) #17	TAF2 (ENSPSNG00000008838) #18	DSCC1 (ENSPSNG00000009026) #19	DEPTOR (ENSPSNG00000009096) #20	COL14A1 (ENSPSNG00000009521) #21	MRPL13 (ENSPSNG00000010859) #23	MTBP (ENSPSNG00000010924) #24	SNTB1 (ENSPSNG00000010977) #25	ENSPSNG00000011071 #26	ENSPSNG00000011144 #26	ZHX2 (ENSPSNG00000011267) #27	DERL1 (ENSPSNG00000011311) #28	TBC1D31 (ENSPSNG00000011483) #29	FAM83A (ENSPSNG00000011679) #30	C8orf76 (ENSPSNG00000011820) #31	ZHX1 (ENSPSNG00000011896) #32	ATAD2 (ENSPSNG00000011951) #33	ENSPSNG00000012049	FBXO32 (ENSPSNG00000012180)	KLHL38 (ENSPSNG00000012264)
Sperm whale	MODERN SPECIES	6	SLC30A8 (ENSPCTG00005013149)	MED30 (ENSPCTG00005013078)	ENSPCTG00005013026	ENSPCTG00005012974	EXT1 (ENSPCTG00005012850)	ENSPCTG00005012813	SAMD12 (ENSPCTG00005012788)	TNFRSF11B (ENSPCTG00005012744) #13	COLEC10 (ENSPCTG00005012679) #14	MAL2 (ENSPCTG00005012632) #15	CCN3 (ENSPCTG00005012587) #16	ENPP2 (ENSPCTG00005011693) #17	TAF2 (ENSPCTG00005011509) #18	DSCC1 (ENSPCTG00005011456) #19	DEPTOR (ENSPCTG00005011300) #20	COL14A1 (ENSPCTG00005011110) #21	MRPL13 (ENSPCTG00005011031) #23	MTBP (ENSPCTG00005010776) #24	SNTB1 (ENSPCTG00005010666) #25	HAS2 (ENSPCTG00005010593) #26	ZHX2 (ENSPCTG00005010562) #27	DERL1 (ENSPCTG00005010414) #28	TBC1D31 (ENSPCTG00005010115) #29	FAM83A (ENSPCTG00005010032) #30	C15H8orf76 (ENSPCTG00005009910) #31	ATAD2 (ENSPCTG00005009813) #33	FBXO32 (ENSPCTG00005009727)	ENSPCTG00005009674	FAM91A1 (ENSPCTG00005009498)	FER1L6 (ENSPCTG00005009103)	TMEM65 (ENSPCTG00005009003)
Blue whale	MODERN SPECIES	8	SLC30A8 (ENSBMSG00010012732)	MED30 (ENSBMSG00010012718)	ENSBMSG00010012705	EXT1 (ENSBMSG00010012696)	ENSBMSG00010012685	ENSBMSG00010012678	SAMD12 (ENSBMSG00010012660)	TNFRSF11B (ENSBMSG00010012652) #13	COLEC10 (ENSBMSG00010012637) #14	MAL2 (ENSBMSG00010012618) #15	CCN3 (ENSBMSG00010012598) #16	ENPP2 (ENSBMSG00010012456) #17	TAF2 (ENSBMSG00010012391) #18	DSCC1 (ENSBMSG00010012372) #19	DEPTOR (ENSBMSG00010012348) #20	COL14A1 (ENSBMSG00010012305) #21	MRPL13 (ENSBMSG00010012277) #23	MTBP (ENSBMSG00010012237) #24	SNTB1 (ENSBMSG00010012216) #25	HAS2 (ENSBMSG00010012186) #26	ENSBMSG00010012170 #26	ENSBMSG00010020076	ZHX2 (ENSBMSG00010020062) #27	DERL1 (ENSBMSG00010020005) #28	TBC1D31 (ENSBMSG00010019969) #29	FAM83A (ENSBMSG00010019928) #30	C8orf76 (ENSBMSG00010019914) #31	ZHX1 (ENSBMSG00010019903) #32	ATAD2 (ENSBMSG00010019878) #33	NTAQ1 (ENSBMSG00010019848)	FBXO32 (ENSBMSG00010019814)
Pecora	ANCESTRAL SPECIES	20	ENSGT00940000157353	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Percora_a	ANCESTRAL SPECIES	23	ENSGT00940000157353	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Bovidae	ANCESTRAL SPECIES	22	ENSGT00940000157353	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Caprinae	ANCESTRAL SPECIES	18	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000164239	ENSGT00940000165104	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515.l.b #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Goat	MODERN SPECIES	5	E2F5 (ENSCHIG00000012871)	LRRCC1 (ENSCHIG00000020060)	ENSCHIG00000013455	ENSCHIG00000017387	ENSCHIG00000011948	ENSCHIG00000022846	SNX16 (ENSCHIG00000017925)	CHMP4C (ENSCHIG00000006061)	ZFAND1 (ENSCHIG00000015733)	SLC10A5 (ENSCHIG00000005398)	IMPA1 (ENSCHIG00000016111)	ENPP2 (ENSCHIG00000018203) #17	TAF2 (ENSCHIG00000024002) #18	ENSCHIG00000014386 #19	DEPTOR (ENSCHIG00000023855) #20	COL14A1 (ENSCHIG00000022643) #21	ENSCHIG00000024054 #23	MTBP (ENSCHIG00000014274) #24	SNTB1 (ENSCHIG00000026552) #25
Rambouillet Sheep	MODERN SPECIES	25	ENSOARG00020008156	E2F5 (ENSOARG00020008214)	LRRCC1 (ENSOARG00020008373)	ENSOARG00020008506	ENSOARG00020008573	RALYL (ENSOARG00020008722)	ENSOARG00020008970	SNX16 (ENSOARG00020009008)	CHMP4C (ENSOARG00020009110)	ZFAND1 (ENSOARG00020009152)	IMPA1 (ENSOARG00020009260)	ENPP2 (ENSOARG00020009360) #17	TAF2 (ENSOARG00020010833) #18	DSCC1 (ENSOARG00020011737) #19	DEPTOR (ENSOARG00020011814) #20	COL14A1 (ENSOARG00020012061) #21	ENSOARG00020012751 #23	MTBP (ENSOARG00020012837) #24	SNTB1 (ENSOARG00020013089) #25
Bovinae	ANCESTRAL SPECIES	18	ENSGT00940000157353.pb	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
American bison	MODERN SPECIES	3150	ENSBBBG00000014664	LRRCC1 (ENSBBBG00000014695)	ENSBBBG00000014705	ENSBBBG00000014729	RALYL (ENSBBBG00000002824)	ENSBBBG00000003657	SNX16 (ENSBBBG00000014866)	CHMP4C (ENSBBBG00000014880)	ZFAND1 (ENSBBBG00000003681)	SLC10A5 (ENSBBBG00000001243)	ENSBBBG00000001221	ENPP2 (ENSBBBG00000001054) #17	TAF2 (ENSBBBG00000001006) #18	DSCC1 (ENSBBBG00000000990) #19	DEPTOR (ENSBBBG00000000969) #20	COL14A1 (ENSBBBG00000014949) #21	MRPL13 (ENSBBBG00000014966) #23	MTBP (ENSBBBG00000014987) #24	SNTB1 (ENSBBBG00000014993) #25
Bos	ANCESTRAL SPECIES	21	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00940000154598.ac.a	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.a.a.a.b	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Bos_b	ANCESTRAL SPECIES	25	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000165104	ENSGT00940000154598.ac.a	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.a.a.a.b	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Cow	MODERN SPECIES	5	ENSBTAG00000040461	ENSBTAG00000038798	RALYL (ENSBTAG00000017717)	ENSBTAG00000053138	ENSBTAG00000046821	SNX16 (ENSBTAG00000019639)	CHMP4C (ENSBTAG00000004792)	ZFAND1 (ENSBTAG00000003588)	SLC10A5 (ENSBTAG00000020523)	IMPA1 (ENSBTAG00000011709)	ENPP2 (ENSBTAG00000013165) #17	TAF2 (ENSBTAG00000015333) #18	ENSBTAG00000049935	DSCC1 (ENSBTAG00000015338) #19	DEPTOR (ENSBTAG00000015341) #20	COL14A1 (ENSBTAG00000013369) #21	MRPL13 (ENSBTAG00000006767) #23	MTBP (ENSBTAG00000006770) #24	SNTB1 (ENSBTAG00000044126) #25	SLC2A5 (ENSBTAG00000007302)
Hybrid Bos Indicus	MODERN SPECIES	5	ENSBIXG00005028340	RALYL (ENSBIXG00005028291)	ENSBIXG00005028045	ENSBIXG00005028034	ENSBIXG00005027960	ENSBIXG00005027949	SNX16 (ENSBIXG00005027908)	CHMP4C (ENSBIXG00005027823)	ENSBIXG00005027788	ENPP2 (ENSBIXG00005004755) #17	TAF2 (ENSBIXG00005027563) #18	ENSBIXG00005027472	DSCC1 (ENSBIXG00005027461) #19	DEPTOR (ENSBIXG00005027437) #20	ENSBIXG00005007587	COL14A1 (ENSBIXG00005027368) #21	MRPL13 (ENSBIXG00005027190) #23	MTBP (ENSBIXG00005027176) #24	SNTB1 (ENSBIXG00005004656) #25
Bos_a	ANCESTRAL SPECIES	60	ENSGT00940000157414	ENSGT00940000163578	ENSGT00940000167266	ENSGT00940000156907	ENSGT00940000154598.ac.a	ENSGT00390000005651	ENSGT00940000159257	ENSGT00730000111180	ENSGT00950000182808.b.a	ENSGT00940000154634.c	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT01100000263480.a.a.b.b.b.a.a.b.a.a.b.b.b.a.a.a.b	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2279					MAD2L1 (ENSBMUG00000026145)	ENSBMUG00000026147	SNX16 (ENSBMUG00000026154)	CHMP4C (ENSBMUG00000026158)	ZFAND1 (ENSBMUG00000026164)	ENSBMUG00000026167	ENPP2 (ENSBMUG00000026172) #17	TAF2 (ENSBMUG00000026176) #18	ENSBMUG00000026179 #19	DEPTOR (ENSBMUG00000026181) #20	ENSBMUG00000026185 #21	ENSBMUG00000026189 #21
Wild yak	MODERN SPECIES	2279						MAD2L1 (ENSBMUG00000026145)	ENSBMUG00000026147	SNX16 (ENSBMUG00000026154)	CHMP4C (ENSBMUG00000026158)	ZFAND1 (ENSBMUG00000026164)	ENSBMUG00000026167	ENPP2 (ENSBMUG00000026172) #17	TAF2 (ENSBMUG00000026176) #18	ENSBMUG00000026179 #19	DEPTOR (ENSBMUG00000026181) #20	ENSBMUG00000026185 #21	ENSBMUG00000026189 #21
Domestic yak	MODERN SPECIES	9	LRRCC1 (ENSBGRG00000011071)	ENSBGRG00000011350	RALYL (ENSBGRG00000011581)	ENSBGRG00000012297	ENSBGRG00000012321	SNX16 (ENSBGRG00000012372)	CHMP4C (ENSBGRG00000012513)	ZFAND1 (ENSBGRG00000012560)	SLC10A5 (ENSBGRG00000012892)	IMPA1 (ENSBGRG00000012914)	ENPP2 (ENSBGRG00000013089) #17	TAF2 (ENSBGRG00000015256) #18	ENSBGRG00000015750	DSCC1 (ENSBGRG00000015766) #19	DEPTOR (ENSBGRG00000015859) #20	COL14A1 (ENSBGRG00000016164) #21	MRPL13 (ENSBGRG00000016852) #23	MTBP (ENSBGRG00000017005) #24	SNTB1 (ENSBGRG00000017320) #25
Siberian musk deer	MODERN SPECIES	63							ENSMMSG00000000105	CHMP4C (ENSMMSG00000000144)	ZFAND1 (ENSMMSG00000000170)	ENSMMSG00000000202	ENSMMSG00000000232	ENPP2 (ENSMMSG00000000332) #17	TAF2 (ENSMMSG00000000641) #18	DSCC1 (ENSMMSG00000000823) #19	DEPTOR (ENSMMSG00000000892) #20	COL14A1 (ENSMMSG00000001043) #21	MRPL13 (ENSMMSG00000001385) #23	MTBP (ENSMMSG00000001415) #24	SNTB1 (ENSMMSG00000001464) #25
Yarkand deer	MODERN SPECIES	13	E2F5 (ENSCHYG00000012918)	LRRCC1 (ENSCHYG00000013031)	ENSCHYG00000013414	ENSCHYG00000013461	RALYL (ENSCHYG00000013513)	SNX16 (ENSCHYG00000013858)	CHMP4C (ENSCHYG00000014085)	ZFAND1 (ENSCHYG00000014134)	SLC10A5 (ENSCHYG00000014264)	ENSCHYG00000014296	ENPP2 (ENSCHYG00000014418) #17	TAF2 (ENSCHYG00000015780) #18	ENSCHYG00000016021	DSCC1 (ENSCHYG00000013586) #19	DEPTOR (ENSCHYG00000013669) #20	COL14A1 (ENSCHYG00000013958) #21	MRPL13 (ENSCHYG00000014510) #23	MTBP (ENSCHYG00000014626) #24	SNTB1 (ENSCHYG00000014898) #25
Camelidae	ANCESTRAL SPECIES	19	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Arabian camel	MODERN SPECIES	17	EIF3H (ENSCDRG00005021763)	ENSCDRG00005021769	UTP23 (ENSCDRG00005021773)	RAD21 (ENSCDRG00005021778)	SLC30A8 (ENSCDRG00005021786)	MED30 (ENSCDRG00005021791)	EXT1 (ENSCDRG00005021794)	SAMD12 (ENSCDRG00005021800)	TNFRSF11B (ENSCDRG00005021806) #13	COLEC10 (ENSCDRG00005021812) #14	MAL2 (ENSCDRG00005021822) #15	CCN3 (ENSCDRG00005021825) #16	TAF2 (ENSCDRG00005021835) #18	DSCC1 (ENSCDRG00005021845) #19	DEPTOR (ENSCDRG00005021847) #20	COL14A1 (ENSCDRG00005021849) #21	MRPL13 (ENSCDRG00005021852) #23	MTBP (ENSCDRG00005021854) #24	SNTB1 (ENSCDRG00005021855) #25	HAS2 (ENSCDRG00005021856) #26	ZHX2 (ENSCDRG00005021859) #27	DERL1 (ENSCDRG00005021860) #28	TBC1D31 (ENSCDRG00005021862) #29	FAM83A (ENSCDRG00005021868) #30	C8orf76 (ENSCDRG00005021869) #31	ZHX1 (ENSCDRG00005003624) #32	ATAD2 (ENSCDRG00005003654) #33	NTAQ1 (ENSCDRG00005003763)	FBXO32 (ENSCDRG00005003831)	KLHL38 (ENSCDRG00005003891)	ANXA13 (ENSCDRG00005003930)
Alpaca	MODERN SPECIES	1609					MED30 (ENSVPAG00000000757)	EXT1 (ENSVPAG00000000758)	SAMD12 (ENSVPAG00000000759)	TNFRSF11B (ENSVPAG00000000761) #13	COLEC10 (ENSVPAG00000000762) #14	MAL2 (ENSVPAG00000000763) #15	CCN3 (ENSVPAG00000000764) #16	ENPP2 (ENSVPAG00000000765) #17	TAF2 (ENSVPAG00000000766) #18	DSCC1 (ENSVPAG00000000770) #19	DEPTOR (ENSVPAG00000000772) #20	COL14A1 (ENSVPAG00000000773) #21	MRPL13 (ENSVPAG00000000774) #23	MTBP (ENSVPAG00000000775) #24	SNTB1 (ENSVPAG00000000777) #25
Laurasiatheria_b	ANCESTRAL SPECIES	20	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Carnivora	ANCESTRAL SPECIES	22	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Caniformia	ANCESTRAL SPECIES	23	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Caniformia_b	ANCESTRAL SPECIES	22	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Ursidae	ANCESTRAL SPECIES	26	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515.n #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Ursus	ANCESTRAL SPECIES	46	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515.n #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Polar bear	MODERN SPECIES	157	UTP23 (ENSUMAG00000020439)	RAD21 (ENSUMAG00000020442)	SLC30A8 (ENSUMAG00000020456)	MED30 (ENSUMAG00000020487)	EXT1 (ENSUMAG00000020518)	ENSUMAG00000020673	SAMD12 (ENSUMAG00000020677)	TNFRSF11B (ENSUMAG00000020695) #13	COLEC10 (ENSUMAG00000020700) #14	MAL2 (ENSUMAG00000020702) #15	CCN3 (ENSUMAG00000020705) #16	ENPP2 (ENSUMAG00000020711) #17	TAF2 (ENSUMAG00000020862) #18	DSCC1 (ENSUMAG00000021323) #19	DEPTOR (ENSUMAG00000021329) #20	COL14A1 (ENSUMAG00000021437) #21	MRPL13 (ENSUMAG00000021939) #23	MTBP (ENSUMAG00000021940) #24	SNTB1 (ENSUMAG00000021946) #25	HAS2 (ENSUMAG00000021951) #26	ENSUMAG00000021958	ZHX2 (ENSUMAG00000021964) #27	DERL1 (ENSUMAG00000021965) #28	TBC1D31 (ENSUMAG00000021969) #29	FAM83A (ENSUMAG00000021979) #30	ENSUMAG00000021984	C8orf76 (ENSUMAG00000021987) #31	ZHX1 (ENSUMAG00000021988) #32	ATAD2 (ENSUMAG00000022014) #33	NTAQ1 (ENSUMAG00000022240)	FBXO32 (ENSUMAG00000022246)
American black bear	MODERN SPECIES	5130																COL14A1 (ENSUAMG00000014895) #21
Giant Panda	MODERN SPECIES	19	EIF3H (ENSAMEG00000010322)	UTP23 (ENSAMEG00000010317)	RAD21 (ENSAMEG00000001648)	SLC30A8 (ENSAMEG00000001617)	MED30 (ENSAMEG00000011024)	EXT1 (ENSAMEG00000002597)	SAMD12 (ENSAMEG00000002609)	TNFRSF11B (ENSAMEG00000002611) #13	COLEC10 (ENSAMEG00000000398) #14	MAL2 (ENSAMEG00000028146) #15	CCN3 (ENSAMEG00000004343) #16	ENPP2 (ENSAMEG00000004213) #17	TAF2 (ENSAMEG00000004158) #18	DSCC1 (ENSAMEG00000002148) #19	DEPTOR (ENSAMEG00000002174) #20	COL14A1 (ENSAMEG00000002184) #21	MRPL13 (ENSAMEG00000002225) #23	MTBP (ENSAMEG00000002231) #24	SNTB1 (ENSAMEG00000027317) #25	ENSAMEG00000031306	HAS2 (ENSAMEG00000008288) #26	ZHX2 (ENSAMEG00000029062) #27	ENSAMEG00000029645 #27	DERL1 (ENSAMEG00000006519) #28	TBC1D31 (ENSAMEG00000011034) #29	FAM83A (ENSAMEG00000011084) #30	ENSAMEG00000025138	C8orf76 (ENSAMEG00000011095) #31	ZHX1 (ENSAMEG00000018759) #32	ATAD2 (ENSAMEG00000011109) #33	NTAQ1 (ENSAMEG00000011138)
Mustelinae	ANCESTRAL SPECIES	68	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a.a	ENSGT00940000157647	ENSGT00940000159797
Ferret	MODERN SPECIES	172	UTP23 (ENSMPUG00000000987)	RAD21 (ENSMPUG00000000988)	SLC30A8 (ENSMPUG00000000990)	MED30 (ENSMPUG00000000992)	ENSMPUG00000000993	EXT1 (ENSMPUG00000000994)	SAMD12 (ENSMPUG00000001022)	TNFRSF11B (ENSMPUG00000001026) #13	COLEC10 (ENSMPUG00000001028) #14	MAL2 (ENSMPUG00000001031) #15	CCN3 (ENSMPUG00000001033) #16	ENPP2 (ENSMPUG00000001034) #17	TAF2 (ENSMPUG00000001041) #18	DSCC1 (ENSMPUG00000001049) #19	DEPTOR (ENSMPUG00000001074) #20	COL14A1 (ENSMPUG00000001076) #21	MRPL13 (ENSMPUG00000001080) #23	MTBP (ENSMPUG00000001098) #24	SNTB1 (ENSMPUG00000001118) #25	ENSMPUG00000018552	HAS2 (ENSMPUG00000001124) #26	DERL1 (ENSMPUG00000001132) #28	TBC1D31 (ENSMPUG00000001135) #29	FAM83A (ENSMPUG00000001142) #30	ZHX1 (ENSMPUG00000018555) #32	ATAD2 (ENSMPUG00000001145) #33	NTAQ1 (ENSMPUG00000001150)	FBXO32 (ENSMPUG00000001173)	ENSMPUG00000018558	KLHL38 (ENSMPUG00000001179)	ANXA13 (ENSMPUG00000001184)
American mink	MODERN SPECIES	152	UTP23 (ENSNVIG00000006883)	RAD21 (ENSNVIG00000006840)	ENSNVIG00000006829	SLC30A8 (ENSNVIG00000006791)	MED30 (ENSNVIG00000006778)	EXT1 (ENSNVIG00000006760)	B8ZZB7 (ENSNVIG00000006729)	TR11B (ENSNVIG00000006701) #13	COLEC10 (ENSNVIG00000006685) #14	MAL2 (ENSNVIG00000006659) #15	CCN3 (ENSNVIG00000006649) #16	ENPP2 (ENSNVIG00000006454) #17	TAF2 (ENSNVIG00000006402) #18	DSCC1 (ENSNVIG00000006389) #19	DEPTOR (ENSNVIG00000006358) #20	COL14A1 (ENSNVIG00000005962) #21	MRPL13 (ENSNVIG00000005948) #23	MTBP (ENSNVIG00000005908) #24	SNTB1 (ENSNVIG00000005896) #25	HAS2 (ENSNVIG00000005875) #26	DERL1 (ENSNVIG00000005788) #28	ENSNVIG00000005760	TBC1D31 (ENSNVIG00000005647) #29	FAM83A (ENSNVIG00000005639) #30	C8orf76 (ENSNVIG00000005604) #31	ZHX1 (ENSNVIG00000005593) #32	ATAD2 (ENSNVIG00000005534) #33	NTAQ1 (ENSNVIG00000005443)	ENSNVIG00000005424
Canidae	ANCESTRAL SPECIES	33	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00970000197358	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Canis_lupus	ANCESTRAL SPECIES	19	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00910000148652	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00940000157482.d.f	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00970000197358	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Dingo	DUPLICATION
Dingo	MODERN SPECIES	88	EXT1 (ENSCAFG00020004235)	ENSCAFG00020004283	SAMD12 (ENSCAFG00020004321)	TNFRSF11B (ENSCAFG00020004337) #13	ENSCAFG00020004342	COLEC10 (ENSCAFG00020004344) #14	MAL2 (ENSCAFG00020004351) #15	ENSCAFG00020004355	CCN3 (ENSCAFG00020004358) #16	ENPP2 (ENSCAFG00020004366) #17	TAF2 (ENSCAFG00020004477) #18	ENSCAFG00020005402	DSCC1 (ENSCAFG00020005411) #19	ENSCAFG00020005452	DEPTOR (ENSCAFG00020005480) #20	ENSCAFG00020005489 #21	ENSCAFG00020005624 #21	MRPL13 (ENSCAFG00020005790) #23	MTBP (ENSCAFG00020005809) #24	SNTB1 (ENSCAFG00020005904) #25	ENSCAFG00020005908	HAS2 (ENSCAFG00020005923) #26	DERL1 (ENSCAFG00020005944) #28	ENSCAFG00020005948	TBC1D31 (ENSCAFG00020005964) #29	ENSCAFG00020006004	FAM83A (ENSCAFG00020006007) #30	C8orf76 (ENSCAFG00020006009) #31	ZHX1 (ENSCAFG00020006010) #32	ATAD2 (ENSCAFG00020006012) #33	NTAQ1 (ENSCAFG00020006326)
Dingo	MODERN SPECIES	88	ENSCAFG00020004283	SAMD12 (ENSCAFG00020004321)	TNFRSF11B (ENSCAFG00020004337) #13	ENSCAFG00020004342	COLEC10 (ENSCAFG00020004344) #14	MAL2 (ENSCAFG00020004351) #15	ENSCAFG00020004355	CCN3 (ENSCAFG00020004358) #16	ENPP2 (ENSCAFG00020004366) #17	TAF2 (ENSCAFG00020004477) #18	ENSCAFG00020005402	DSCC1 (ENSCAFG00020005411) #19	ENSCAFG00020005452	DEPTOR (ENSCAFG00020005480) #20	ENSCAFG00020005489 #21	ENSCAFG00020005624 #21	MRPL13 (ENSCAFG00020005790) #23	MTBP (ENSCAFG00020005809) #24	SNTB1 (ENSCAFG00020005904) #25	ENSCAFG00020005908	HAS2 (ENSCAFG00020005923) #26	DERL1 (ENSCAFG00020005944) #28	ENSCAFG00020005948	TBC1D31 (ENSCAFG00020005964) #29	ENSCAFG00020006004	FAM83A (ENSCAFG00020006007) #30	C8orf76 (ENSCAFG00020006009) #31	ZHX1 (ENSCAFG00020006010) #32	ATAD2 (ENSCAFG00020006012) #33	NTAQ1 (ENSCAFG00020006326)	FBXO32 (ENSCAFG00020006334)
Dog	MODERN SPECIES	4	SLC30A8 (ENSCAFG00845014466)	MED30 (ENSCAFG00845014503)	EXT1 (ENSCAFG00845014539)	SAMD12 (ENSCAFG00845014607)	TNFRSF11B (ENSCAFG00845005623) #13	ENSCAFG00845005645	COLEC10 (ENSCAFG00845005655) #14	MAL2 (ENSCAFG00845005680) #15	CCN3 (ENSCAFG00845005703) #16	ENPP2 (ENSCAFG00845005953) #17	TAF2 (ENSCAFG00845006764) #18	ENSCAFG00845006985	DSCC1 (ENSCAFG00845007041) #19	ENSCAFG00845007121	DEPTOR (ENSCAFG00845007215) #20	COL14A1 (ENSCAFG00845007662) #21	MRPL13 (ENSCAFG00845008306) #23	MTBP (ENSCAFG00845008381) #24	SNTB1 (ENSCAFG00845008497) #25	ENSCAFG00845008557	ENSCAFG00845008568	HAS2 (ENSCAFG00845008598) #26	ZHX2 (ENSCAFG00845008690) #27	ENSCAFG00845008768 #28	TBC1D31 (ENSCAFG00845008985) #29	ENSCAFG00845009379	FAM83A (ENSCAFG00845009399) #30	C13H8orf76 (ENSCAFG00845009441) #31	ZHX1 (ENSCAFG00845009521) #32	ATAD2 (ENSCAFG00845009576) #33	NTAQ1 (ENSCAFG00845009837)
Red fox	MODERN SPECIES	13	UTP23 (ENSVVUG00000015307)	RAD21 (ENSVVUG00000015308)	SLC30A8 (ENSVVUG00000015316)	MED30 (ENSVVUG00000015389)	EXT1 (ENSVVUG00000015398)	ENSVVUG00000015717	SAMD12 (ENSVVUG00000015742)	TNFRSF11B (ENSVVUG00000015804) #13	COLEC10 (ENSVVUG00000015807) #14	MAL2 (ENSVVUG00000015814) #15	NOV (ENSVVUG00000015831) #16	ENPP2 (ENSVVUG00000015843) #17	TAF2 (ENSVVUG00000015909) #18	DSCC1 (ENSVVUG00000015957) #19	DEPTOR (ENSVVUG00000015978) #20	COL14A1 (ENSVVUG00000015993) #21	MRPL13 (ENSVVUG00000016056) #23	MTBP (ENSVVUG00000016074) #24	SNTB1 (ENSVVUG00000016109) #25	ENSVVUG00000016111	ENSVVUG00000016117	HAS2 (ENSVVUG00000016131) #26	DERL1 (ENSVVUG00000016143) #28	TBC1D31 (ENSVVUG00000016153) #29	FAM83A (ENSVVUG00000016221) #30	CUNH8orf76 (ENSVVUG00000016224) #31	ATAD2 (ENSVVUG00000016233) #33	WDYHV1 (ENSVVUG00000016251)	FBXO32 (ENSVVUG00000016269)	KLHL38 (ENSVVUG00000016276)	ANXA13 (ENSVVUG00000016285)
Felidae	ANCESTRAL SPECIES	22	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Panthera	ANCESTRAL SPECIES	16	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Tiger	DUPLICATION
Tiger	MODERN SPECIES	59	ENSPTIG00000020266	RAD21 (ENSPTIG00000020923)	SLC30A8 (ENSPTIG00000006598)	MED30 (ENSPTIG00000008078)	EXT1 (ENSPTIG00000009060)	SAMD12 (ENSPTIG00000010558)	TNFRSF11B (ENSPTIG00000011541) #13	COLEC10 (ENSPTIG00000012236) #14	MAL2 (ENSPTIG00000012927) #15	CCN3 (ENSPTIG00000013703) #16	ENPP2 (ENSPTIG00000015615) #17	TAF2 (ENSPTIG00000009218) #18	DSCC1 (ENSPTIG00000011632) #19	DEPTOR (ENSPTIG00000012342) #20	ENSPTIG00000013675 #21	ENSPTIG00000017406 #21	MRPL13 (ENSPTIG00000021819) #23	MTBP (ENSPTIG00000021927) #24	SNTB1 (ENSPTIG00000000330) #25	HAS2 (ENSPTIG00000005214) #26
Tiger	MODERN SPECIES	59	UTP23 (ENSPTIG00000019925)	ENSPTIG00000020266	RAD21 (ENSPTIG00000020923)	SLC30A8 (ENSPTIG00000006598)	MED30 (ENSPTIG00000008078)	EXT1 (ENSPTIG00000009060)	SAMD12 (ENSPTIG00000010558)	TNFRSF11B (ENSPTIG00000011541) #13	COLEC10 (ENSPTIG00000012236) #14	MAL2 (ENSPTIG00000012927) #15	CCN3 (ENSPTIG00000013703) #16	ENPP2 (ENSPTIG00000015615) #17	TAF2 (ENSPTIG00000009218) #18	DSCC1 (ENSPTIG00000011632) #19	DEPTOR (ENSPTIG00000012342) #20	ENSPTIG00000013675 #21	ENSPTIG00000017406 #21	MRPL13 (ENSPTIG00000021819) #23	MTBP (ENSPTIG00000021927) #24	SNTB1 (ENSPTIG00000000330) #25	HAS2 (ENSPTIG00000005214) #26
Panthera_a	ANCESTRAL SPECIES	16	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
leopard	DUPLICATION
leopard	MODERN SPECIES	34	UTP23 (ENSPPRG00000024902)	ENSPPRG00000024901	RAD21 (ENSPPRG00000024897)	SLC30A8 (ENSPPRG00000024895)	MED30 (ENSPPRG00000024892)	EXT1 (ENSPPRG00000024885)	SAMD12 (ENSPPRG00000024883)	TNFRSF11B (ENSPPRG00000024881) #13	COLEC10 (ENSPPRG00000024879) #14	MAL2 (ENSPPRG00000024870) #15	CCN3 (ENSPPRG00000024868) #16	ENPP2 (ENSPPRG00000024856) #17	TAF2 (ENSPPRG00000024848) #18	DSCC1 (ENSPPRG00000024843) #19	DEPTOR (ENSPPRG00000024837) #20	ENSPPRG00000024829 #21	ENSPPRG00000024812 #21	MRPL13 (ENSPPRG00000024807) #23	MTBP (ENSPPRG00000024799) #24	SNTB1 (ENSPPRG00000024791) #25	HAS2 (ENSPPRG00000024783) #26	ZHX2 (ENSPPRG00000019439) #27	ENSPPRG00000024779	ENSPPRG00000019457	DERL1 (ENSPPRG00000024767) #28	TBC1D31 (ENSPPRG00000024718) #29	FAM83A (ENSPPRG00000024676) #30	C8orf76 (ENSPPRG00000024659) #31	ZHX1 (ENSPPRG00000019474) #32	ENSPPRG00000024654	ATAD2 (ENSPPRG00000024647) #33
leopard	MODERN SPECIES	34	ENSPPRG00000024901	RAD21 (ENSPPRG00000024897)	SLC30A8 (ENSPPRG00000024895)	MED30 (ENSPPRG00000024892)	EXT1 (ENSPPRG00000024885)	SAMD12 (ENSPPRG00000024883)	TNFRSF11B (ENSPPRG00000024881) #13	COLEC10 (ENSPPRG00000024879) #14	MAL2 (ENSPPRG00000024870) #15	CCN3 (ENSPPRG00000024868) #16	ENPP2 (ENSPPRG00000024856) #17	TAF2 (ENSPPRG00000024848) #18	DSCC1 (ENSPPRG00000024843) #19	DEPTOR (ENSPPRG00000024837) #20	ENSPPRG00000024829 #21	ENSPPRG00000024812 #21	MRPL13 (ENSPPRG00000024807) #23	MTBP (ENSPPRG00000024799) #24	SNTB1 (ENSPPRG00000024791) #25	HAS2 (ENSPPRG00000024783) #26	ZHX2 (ENSPPRG00000019439) #27	ENSPPRG00000024779	ENSPPRG00000019457	DERL1 (ENSPPRG00000024767) #28	TBC1D31 (ENSPPRG00000024718) #29	FAM83A (ENSPPRG00000024676) #30	C8orf76 (ENSPPRG00000024659) #31	ZHX1 (ENSPPRG00000019474) #32	ENSPPRG00000024654	ATAD2 (ENSPPRG00000024647) #33	NTAQ1 (ENSPPRG00000024575)
lion	MODERN SPECIES	509	UTP23 (ENSPLOG00000005780)	RAD21 (ENSPLOG00000005735)	SLC30A8 (ENSPLOG00000005688)	MED30 (ENSPLOG00000005660)	EXT1 (ENSPLOG00000005628)	SAMD12 (ENSPLOG00000005597)	TNFRSF11B (ENSPLOG00000005575) #13	COLEC10 (ENSPLOG00000005543) #14	MAL2 (ENSPLOG00000005517) #15	CCN3 (ENSPLOG00000005493) #16	ENSPLOG00000005473	ENPP2 (ENSPLOG00000005318) #17	TAF2 (ENSPLOG00000005247) #18	DSCC1 (ENSPLOG00000005232) #19	DEPTOR (ENSPLOG00000005212) #20	COL14A1 (ENSPLOG00000005151) #21	MRPL13 (ENSPLOG00000005086) #23	MTBP (ENSPLOG00000005046) #24	SNTB1 (ENSPLOG00000005013) #25	HAS2 (ENSPLOG00000004992) #26	ZHX2 (ENSPLOG00000004981) #27	ENSPLOG00000004974	DERL1 (ENSPLOG00000004945) #28	TBC1D31 (ENSPLOG00000004856) #29	FAM83A (ENSPLOG00000004807) #30	C8orf76 (ENSPLOG00000004797) #31	ZHX1 (ENSPLOG00000004784) #32	ATAD2 (ENSPLOG00000004768) #33	NTAQ1 (ENSPLOG00000004742)	FBXO32 (ENSPLOG00000004720)	KLHL38 (ENSPLOG00000004709)
Cat	MODERN SPECIES	249	EIF3H (ENSFCAG00000014831)	UTP23 (ENSFCAG00000036051)	RAD21 (ENSFCAG00000013473)	SLC30A8 (ENSFCAG00000007087)	MED30 (ENSFCAG00000025335)	EXT1 (ENSFCAG00000042984)	SAMD12 (ENSFCAG00000039716)	TNFRSF11B (ENSFCAG00000001880) #13	COLEC10 (ENSFCAG00000038585) #14	MAL2 (ENSFCAG00000014187) #15	CCN3 (ENSFCAG00000030696) #16	ENPP2 (ENSFCAG00000010937) #17	TAF2 (ENSFCAG00000030848) #18	DSCC1 (ENSFCAG00000010944) #19	DEPTOR (ENSFCAG00000010947) #20	COL14A1 (ENSFCAG00000001462) #21	MRPL13 (ENSFCAG00000001463) #23	MTBP (ENSFCAG00000024130) #24	SNTB1 (ENSFCAG00000046126) #25	HAS2 (ENSFCAG00000037155) #26	ZHX2 (ENSFCAG00000026338) #27	ENSFCAG00000047753	DERL1 (ENSFCAG00000030653) #28	TBC1D31 (ENSFCAG00000013739) #29	FAM83A (ENSFCAG00000032933) #30	C8orf76 (ENSFCAG00000013744) #31	ZHX1 (ENSFCAG00000013745) #32	ATAD2 (ENSFCAG00000029097) #33	NTAQ1 (ENSFCAG00000030125)	FBXO32 (ENSFCAG00000010467)	KLHL38 (ENSFCAG00000010469)
Laurasiatheria_c	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Chiroptera	ANCESTRAL SPECIES	27	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Microchiroptera	ANCESTRAL SPECIES	27	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Greater horseshoe bat	MODERN SPECIES	5	UTP23 (ENSRFEG00010009377)	RAD21 (ENSRFEG00010009395)	ENSRFEG00010009502	SLC30A8 (ENSRFEG00010009520)	MED30 (ENSRFEG00010009632)	EXT1 (ENSRFEG00010009689)	SAMD12 (ENSRFEG00010009797)	TNFRSF11B (ENSRFEG00010009857) #13	COLEC10 (ENSRFEG00010009890) #14	MAL2 (ENSRFEG00010009943) #15	CCN3 (ENSRFEG00010009972) #16	ENPP2 (ENSRFEG00010010040) #17	TAF2 (ENSRFEG00010010250) #18	DSCC1 (ENSRFEG00010010374) #19	DEPTOR (ENSRFEG00010010428) #20	COL14A1 (ENSRFEG00010010684) #21	MRPL13 (ENSRFEG00010012491) #23	MTBP (ENSRFEG00010012541) #24	SNTB1 (ENSRFEG00010012578) #25	HAS2 (ENSRFEG00010012610) #26	ZHX2 (ENSRFEG00010012663) #27	DERL1 (ENSRFEG00010012689) #28	TBC1D31 (ENSRFEG00010012805) #29	FAM83A (ENSRFEG00010012914) #30	C8orf76 (ENSRFEG00010013006) #31	ZHX1 (ENSRFEG00010013095) #32	ATAD2 (ENSRFEG00010013122) #33	NTAQ1 (ENSRFEG00010013190)	FBXO32 (ENSRFEG00010013335)	KLHL38 (ENSRFEG00010013487)	ANXA13 (ENSRFEG00010013564)
Microbat	MODERN SPECIES	954	RAD21 (ENSMLUG00000006449)	ENSMLUG00000030664	SLC30A8 (ENSMLUG00000002588)	MED30 (ENSMLUG00000002592)	EXT1 (ENSMLUG00000002596)	SAMD12 (ENSMLUG00000002603)	TNFRSF11B (ENSMLUG00000002940) #13	COLEC10 (ENSMLUG00000002946) #14	MAL2 (ENSMLUG00000006274) #15	ENSMLUG00000030522	CCN3 (ENSMLUG00000006279) #16	ENPP2 (ENSMLUG00000006285) #17	TAF2 (ENSMLUG00000009579) #18	DSCC1 (ENSMLUG00000009970) #19	DEPTOR (ENSMLUG00000009641) #20	COL14A1 (ENSMLUG00000009662) #21	ENSMLUG00000022827	MRPL13 (ENSMLUG00000009756) #23	MTBP (ENSMLUG00000009773) #24	SNTB1 (ENSMLUG00000009812) #25	HAS2 (ENSMLUG00000006858) #26	ENSMLUG00000024427	ENSMLUG00000000651	ZHX2 (ENSMLUG00000009074) #27	DERL1 (ENSMLUG00000009085) #28	TBC1D31 (ENSMLUG00000015809) #29	OPRK1 (ENSMLUG00000015401)	ENSMLUG00000023216	ATP6V1H (ENSMLUG00000000993)	ENSMLUG00000001001	TCEA1 (ENSMLUG00000001005)
Megabat	MODERN SPECIES	768											CCN3 (ENSPVAG00000003711) #16	ENPP2 (ENSPVAG00000003713) #17	TAF2 (ENSPVAG00000003714) #18	DSCC1 (ENSPVAG00000003715) #19	DEPTOR (ENSPVAG00000003716) #20	COL14A1 (ENSPVAG00000003717) #21	MRPL13 (ENSPVAG00000003719) #23	MTBP (ENSPVAG00000003720) #24	SNTB1 (ENSPVAG00000003721) #25
Equus	ANCESTRAL SPECIES	14	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515.o #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00970000197358	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Donkey	MODERN SPECIES	3	CTHRC1 (ENSEASG00005001285)	SLC25A32 (ENSEASG00005001280)	DCAF13 (ENSEASG00005001266)	RIMS2 (ENSEASG00005001223)	DCSTAMP (ENSEASG00005001208)	DPYS (ENSEASG00005001202)	ENSEASG00005001196	ENSEASG00005023128 #13	COLEC10 (ENSEASG00005026881) #14	MAL2 (ENSEASG00005023122) #15	CCN3 (ENSEASG00005023121) #16	ENPP2 (ENSEASG00005023034) #17	TAF2 (ENSEASG00005022933) #18	DSCC1 (ENSEASG00005022903) #19	DEPTOR (ENSEASG00005022899) #20	COL14A1 (ENSEASG00005022695) #21	MRPL13 (ENSEASG00005028414) #23	ENSEASG00005038685	MTBP (ENSEASG00005022606) #24	SNTB1 (ENSEASG00005022604) #25	ENSEASG00005034851	HAS2 (ENSEASG00005032828) #26	ZHX2 (ENSEASG00005022601) #27	DERL1 (ENSEASG00005036531) #28	TBC1D31 (ENSEASG00005022596) #29	FAM83A (ENSEASG00005022594) #30	C8orf76 (ENSEASG00005022592) #31	ZHX1 (ENSEASG00005022590) #32	ATAD2 (ENSEASG00005022524) #33	NTAQ1 (ENSEASG00005022476)	FBXO32 (ENSEASG00005022474)
Horse	MODERN SPECIES	30	RAD21 (ENSECAG00000016392)	SLC30A8 (ENSECAG00000017475)	MED30 (ENSECAG00000022303)	EXT1 (ENSECAG00000023112)	SAMD12 (ENSECAG00000012962)	ENSECAG00000056676	TNFRSF11B (ENSECAG00000014916) #13	COLEC10 (ENSECAG00000018266) #14	MAL2 (ENSECAG00000022537) #15	CCN3 (ENSECAG00000023039) #16	ENSECAG00000057655	ENPP2 (ENSECAG00000003776) #17	TAF2 (ENSECAG00000024333) #18	DSCC1 (ENSECAG00000015641) #19	DEPTOR (ENSECAG00000021363) #20	COL14A1 (ENSECAG00000009462) #21	MTBP (ENSECAG00000000235) #24	MRPL13 (ENSECAG00000021161) #23	SNTB1 (ENSECAG00000017294) #25	ENSECAG00000028121	ENSECAG00000057814	HAS2 (ENSECAG00000021206) #26	ZHX2 (ENSECAG00000023125) #27	DERL1 (ENSECAG00000023705) #28	TBC1D31 (ENSECAG00000009788) #29	FAM83A (ENSECAG00000018998) #30	C8orf76 (ENSECAG00000020843) #31	ZHX1 (ENSECAG00000023451) #32	ATAD2 (ENSECAG00000023808) #33	NTAQ1 (ENSECAG00000011250)	FBXO32 (ENSECAG00000016002)
Eulipotyphla	ANCESTRAL SPECIES	247																ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Hedgehog	MODERN SPECIES	7914																COL14A1 (ENSEEUG00000011930) #21
Common shrew	MODERN SPECIES	6211																COL14A1 (ENSSARG00000014213) #21	MRPL13 (ENSSARG00000014236) #23	MTBP (ENSSARG00000014242) #24
Euarchontoglires	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Primates	ANCESTRAL SPECIES	20	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Strepsirrhini	ANCESTRAL SPECIES	15	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Lemuriformes	ANCESTRAL SPECIES	36	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Mouse lemur	MODERN SPECIES	31	UTP23 (ENSMICG00000034720)	RAD21 (ENSMICG00000032869)	AARD (ENSMICG00000038083)	SLC30A8 (ENSMICG00000010560)	MED30 (ENSMICG00000010568)	EXT1 (ENSMICG00000010572)	SAMD12 (ENSMICG00000047826)	TNFRSF11B (ENSMICG00000015474) #13	COLEC10 (ENSMICG00000026547) #14	MAL2 (ENSMICG00000043274) #15	CCN3 (ENSMICG00000026675) #16	ENPP2 (ENSMICG00000017293) #17	TAF2 (ENSMICG00000017295) #18	DSCC1 (ENSMICG00000043533) #19	DEPTOR (ENSMICG00000017305) #20	COL14A1 (ENSMICG00000017307) #21	MRPL13 (ENSMICG00000014630) #23	MTBP (ENSMICG00000014639) #24	KCNV1 (ENSMICG00000044286)	ENSMICG00000045891	SYBU (ENSMICG00000013019)	EBAG9 (ENSMICG00000013014)	PKHD1L1 (ENSMICG00000012952)	ENY2 (ENSMICG00000012948)	NUDCD1 (ENSMICG00000012937)	TRHR (ENSMICG00000000934)	EMC2 (ENSMICG00000006145)	ENSMICG00000045979	ENSMICG00000030407	RSPO2 (ENSMICG00000010503)	ANGPT1 (ENSMICG00000010498)
Lemuriformes_a	ANCESTRAL SPECIES	179	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26
Greater bamboo lemur	MODERN SPECIES	591	UTP23 (ENSPSMG00000022433)	RAD21 (ENSPSMG00000022422)	AARD (ENSPSMG00000022402)	SLC30A8 (ENSPSMG00000022398)	MED30 (ENSPSMG00000022384)	EXT1 (ENSPSMG00000022372)	SAMD12 (ENSPSMG00000022364)	TNFRSF11B (ENSPSMG00000022348) #13	COLEC10 (ENSPSMG00000022326) #14	MAL2 (ENSPSMG00000022322) #15	CCN3 (ENSPSMG00000022315) #16	ENPP2 (ENSPSMG00000022281) #17	TAF2 (ENSPSMG00000022194) #18	DSCC1 (ENSPSMG00000022143) #19	DEPTOR (ENSPSMG00000022131) #20	COL14A1 (ENSPSMG00000022031) #21	MRPL13 (ENSPSMG00000021817) #23	MTBP (ENSPSMG00000021807) #24	SNTB1 (ENSPSMG00000021782) #25	ENSPSMG00000021769	HAS2 (ENSPSMG00000021763) #26	ENSPSMG00000021755	ENSPSMG00000021750	RAPGEF2 (ENSPSMG00000021648)	C4orf45 (ENSPSMG00000021458)	FNIP2 (ENSPSMG00000021450)	ENSPSMG00000021409	ETFDH (ENSPSMG00000021357)	C4orf46 (ENSPSMG00000021270)	RXFP1 (ENSPSMG00000021261)	TMEM144 (ENSPSMG00000021184)
Coquerels sifaka	MODERN SPECIES	355						EXT1 (ENSPCOG00000021578)	SAMD12 (ENSPCOG00000015860)	TNFRSF11B (ENSPCOG00000027808) #13	COLEC10 (ENSPCOG00000023253) #14	MAL2 (ENSPCOG00000021603) #15	CCN3 (ENSPCOG00000021959) #16	ENPP2 (ENSPCOG00000015061) #17	TAF2 (ENSPCOG00000017599) #18	DSCC1 (ENSPCOG00000015658) #19	DEPTOR (ENSPCOG00000020090) #20	COL14A1 (ENSPCOG00000021752) #21	MRPL13 (ENSPCOG00000016230) #23	MTBP (ENSPCOG00000021310) #24	SNTB1 (ENSPCOG00000022410) #25
Bushbaby	MODERN SPECIES	119	TRPS1 (ENSOGAG00000005076)	EIF3H (ENSOGAG00000008905)	UTP23 (ENSOGAG00000017024)	ENSOGAG00000017026	SLC30A8 (ENSOGAG00000005867)	MED30 (ENSOGAG00000025376)	EXT1 (ENSOGAG00000016548)	TNFRSF11B (ENSOGAG00000002033) #13	COLEC10 (ENSOGAG00000002035) #14	MAL2 (ENSOGAG00000007648) #15	CCN3 (ENSOGAG00000007651) #16	ENPP2 (ENSOGAG00000007652) #17	TAF2 (ENSOGAG00000031614) #18	DSCC1 (ENSOGAG00000014262) #19	DEPTOR (ENSOGAG00000014267) #20	COL14A1 (ENSOGAG00000014273) #21	MRPL13 (ENSOGAG00000014284) #23	MTBP (ENSOGAG00000014287) #24	SNTB1 (ENSOGAG00000034441) #25	ENSOGAG00000032433	HAS2 (ENSOGAG00000011778) #26	ZHX2 (ENSOGAG00000026824) #27	DERL1 (ENSOGAG00000006958) #28	TBC1D31 (ENSOGAG00000006962) #29	FAM83A (ENSOGAG00000006971) #30	C8orf76 (ENSOGAG00000006973) #31	ZHX1 (ENSOGAG00000027737) #32	ATAD2 (ENSOGAG00000006984) #33	NTAQ1 (ENSOGAG00000006997)	FBXO32 (ENSOGAG00000015395)	ENSOGAG00000028693
Haplorrhini	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912	ENSGT00940000157647
Simiiformes	ANCESTRAL SPECIES	20	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Catarrhini	ANCESTRAL SPECIES	15	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Cercopithecidae	ANCESTRAL SPECIES	14	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00940000154156.d.n.b.b.a.b	ENSGT00390000014398
Cercopithecinae	ANCESTRAL SPECIES	16	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00940000154156.d.n.b.b.a.b	ENSGT00390000014398	ENSGT00390000004915.a
Vervet Monkey	MODERN SPECIES	27	AARD (ENSCSAG00000010917)	SLC30A8 (ENSCSAG00000010907)	ENSCSAG00000010884	MED30 (ENSCSAG00000010875)	EXT1 (ENSCSAG00000010872)	SAMD12 (ENSCSAG00000010860)	ENSCSAG00000018611	TNFRSF11B (ENSCSAG00000010858) #13	COLEC10 (ENSCSAG00000010854) #14	MAL2 (ENSCSAG00000010849) #15	CCN3 (ENSCSAG00000010843) #16	ENPP2 (ENSCSAG00000010835) #17	TAF2 (ENSCSAG00000010814) #18	DSCC1 (ENSCSAG00000010795) #19	DEPTOR (ENSCSAG00000010756) #20	COL14A1 (ENSCSAG00000010745) #21	MRPL13 (ENSCSAG00000010722) #23	MTBP (ENSCSAG00000010710) #24	SNTB1 (ENSCSAG00000010695) #25	HAS2 (ENSCSAG00000010685) #26	ZHX2 (ENSCSAG00000018613) #27	DERL1 (ENSCSAG00000010675) #28	ENSCSAG00000010664	FAM83A (ENSCSAG00000010651) #30	C8orf76 (ENSCSAG00000010639) #31	ZHX1 (ENSCSAG00000010631) #32	ATAD2 (ENSCSAG00000010591) #33	NTAQ1 (ENSCSAG00000010530)	FBXO32 (ENSCSAG00000010523)	KLHL38 (ENSCSAG00000010511)	ANXA13 (ENSCSAG00000010507)
Cercopithecinae_a	ANCESTRAL SPECIES	15	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000002837.n	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00940000154156.d.n.b.b.a.b	ENSGT00390000014398	ENSGT00390000004915.a
Macaca	ANCESTRAL SPECIES	14	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000002837.n	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000160805.b	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Macaca_a	ANCESTRAL SPECIES	16	ENSGT00940000160706	ENSGT00390000002837.n	ENSGT00730000111097.f.a.b.a.b.b	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT01100000263539.b.a.a.a.b.b.b.a.b.a.a.a.a	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000167006	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Rhesus	MODERN SPECIES	18	ENSMMUG00000052668	MED30 (ENSMMUG00000002068)	EXT1 (ENSMMUG00000008635)	ENSMMUG00000014786	SAMD12 (ENSMMUG00000004846)	TNFRSF11B (ENSMMUG00000016485) #13	COLEC10 (ENSMMUG00000000266) #14	MAL2 (ENSMMUG00000004296) #15	ENSMMUG00000053962	CCN3 (ENSMMUG00000005631) #16	ENSMMUG00000050392	ENPP2 (ENSMMUG00000004903) #17	TAF2 (ENSMMUG00000014702) #18	DSCC1 (ENSMMUG00000002788) #19	DEPTOR (ENSMMUG00000002594) #20	COL14A1 (ENSMMUG00000002595) #21	MRPL13 (ENSMMUG00000002599) #23	MTBP (ENSMMUG00000002601) #24	SNTB1 (ENSMMUG00000002607) #25	ENSMMUG00000056085	HAS2 (ENSMMUG00000045043) #26	ENSMMUG00000052557	ZHX2 (ENSMMUG00000005363) #27	DERL1 (ENSMMUG00000013516) #28	TBC1D31 (ENSMMUG00000021157)	FAM83A (ENSMMUG00000006049) #30	C8H8orf76 (ENSMMUG00000037751) #31	ZHX1 (ENSMMUG00000006050) #32	ATAD2 (ENSMMUG00000020467) #33	NTAQ1 (ENSMMUG00000028923)	FBXO32 (ENSMMUG00000023778)
Crab-eating macaque	MODERN SPECIES	18	ENSMFAG00000033540	SAMD12 (ENSMFAG00000043380)	TNFRSF11B (ENSMFAG00000040874) #13	COLEC10 (ENSMFAG00000065700) #14	MAL2 (ENSMFAG00000059893) #15	ENSMFAG00000048574	CCN3 (ENSMFAG00000028128) #16	ENSMFAG00000059209	ENPP2 (ENSMFAG00000002827) #17	TAF2 (ENSMFAG00000003672) #18	ENSMFAG00000055201	DSCC1 (ENSMFAG00000003521) #19	DEPTOR (ENSMFAG00000040290) #20	ENSMFAG00000048778	ENSMFAG00000003874	COL14A1 (ENSMFAG00000043483) #21	ENSMFAG00000001138	MRPL13 (ENSMFAG00000009755) #23	MTBP (ENSMFAG00000030284) #24	SNTB1 (ENSMFAG00000031454) #25	HAS2 (ENSMFAG00000051883) #26	ENSMFAG00000049676	ZHX2 (ENSMFAG00000043785) #27	ENSMFAG00000065670	DERL1 (ENSMFAG00000044615) #28	ENSMFAG00000036868	ENSMFAG00000059132	ENSMFAG00000047851	ENSMFAG00000054778	C8orf76 (ENSMFAG00000003918) #31	ZHX1 (ENSMFAG00000023007) #32
Pig-tailed macaque	MODERN SPECIES	419				ENSMNEG00000024915	MED30 (ENSMNEG00000029811)	EXT1 (ENSMNEG00000044110)	SAMD12 (ENSMNEG00000033633)	TNFRSF11B (ENSMNEG00000039819) #13	COLEC10 (ENSMNEG00000036282) #14	MAL2 (ENSMNEG00000027535) #15	CCN3 (ENSMNEG00000027027) #16	ENPP2 (ENSMNEG00000031748) #17	TAF2 (ENSMNEG00000034231) #18	DEPTOR (ENSMNEG00000028415) #20	ENSMNEG00000036309	COL14A1 (ENSMNEG00000034221) #21	MRPL13 (ENSMNEG00000034159) #23	MTBP (ENSMNEG00000040905) #24	SNTB1 (ENSMNEG00000032225) #25	HAS2 (ENSMNEG00000035700) #26	ENSMNEG00000044687	ZHX2 (ENSMNEG00000023076) #27	DERL1 (ENSMNEG00000041012) #28	ENSMNEG00000031862	FAM83A (ENSMNEG00000027364) #30	C8orf76 (ENSMNEG00000030842) #31	ATAD2 (ENSMNEG00000041148) #33	NTAQ1 (ENSMNEG00000045030)	FBXO32 (ENSMNEG00000032524)	ENSMNEG00000044312	KLHL38 (ENSMNEG00000036823)
Cercopithecinae_b	ANCESTRAL SPECIES	9	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000002837.n	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00940000154156.d.n.b.b.a.b	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912
Olive baboon	MODERN SPECIES	18	MED30 (ENSPANG00000024750)	EXT1 (ENSPANG00000007690)	ENSPANG00000047325	SAMD12 (ENSPANG00000018159)	COLEC10 (ENSPANG00000011014) #14	TNFRSF11B (ENSPANG00000020682) #13	MAL2 (ENSPANG00000006869) #15	CCN3 (ENSPANG00000006166) #16	ENPP2 (ENSPANG00000016168) #17	TAF2 (ENSPANG00000026219) #18	DSCC1 (ENSPANG00000008385) #19	DEPTOR (ENSPANG00000014432) #20	ENSPANG00000040563	ENSPANG00000035077	ENSPANG00000040476	COL14A1 (ENSPANG00000011145) #21	MRPL13 (ENSPANG00000037222) #23	MTBP (ENSPANG00000001116) #24	SNTB1 (ENSPANG00000011900) #25	ENSPANG00000042928	ENSPANG00000020681 #26	ENSPANG00000050427	ENSPANG00000036787	ZHX2 (ENSPANG00000002729) #27	ENSPANG00000045897	DERL1 (ENSPANG00000030594) #28	TBC1D31 (ENSPANG00000007688) #29	ENSPANG00000036947	ENSPANG00000043100	FAM83A (ENSPANG00000015968) #30	C8orf76 (ENSPANG00000005866) #31
Cercopithecinae_d	ANCESTRAL SPECIES	78	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000002837.n	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00940000154156.d.n.b.b.a.b	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00910000146912
Sooty mangabey	MODERN SPECIES	633	AARD (ENSCATG00000044565)	SLC30A8 (ENSCATG00000036467)	ENSCATG00000020336	MED30 (ENSCATG00000038796)	EXT1 (ENSCATG00000044568)	SAMD12 (ENSCATG00000036880)	TNFRSF11B (ENSCATG00000043464) #13	COLEC10 (ENSCATG00000019671) #14	MAL2 (ENSCATG00000021493) #15	CCN3 (ENSCATG00000034379) #16	ENPP2 (ENSCATG00000041981) #17	TAF2 (ENSCATG00000036444) #18	DSCC1 (ENSCATG00000029460) #19	DEPTOR (ENSCATG00000044620) #20	ENSCATG00000029865	COL14A1 (ENSCATG00000017126) #21	MRPL13 (ENSCATG00000044803) #23	MTBP (ENSCATG00000040612) #24	SNTB1 (ENSCATG00000007777) #25	ENSCATG00000020385	HAS2 (ENSCATG00000033391) #26
Drill	MODERN SPECIES	364						ENSMLEG00000022517	SAMD12 (ENSMLEG00000035526)	TNFRSF11B (ENSMLEG00000037940) #13	COLEC10 (ENSMLEG00000036370) #14	MAL2 (ENSMLEG00000041488) #15	CCN3 (ENSMLEG00000031569) #16	ENPP2 (ENSMLEG00000034395) #17	TAF2 (ENSMLEG00000037737) #18	DSCC1 (ENSMLEG00000040990) #19	DEPTOR (ENSMLEG00000039489) #20	COL14A1 (ENSMLEG00000033957) #21	MRPL13 (ENSMLEG00000009613) #23	MTBP (ENSMLEG00000031711) #24	SNTB1 (ENSMLEG00000036288) #25	HAS2 (ENSMLEG00000020771) #26	ZHX2 (ENSMLEG00000025265) #27	DERL1 (ENSMLEG00000025656) #28	ENSMLEG00000042183	FAM83A (ENSMLEG00000043861) #30	C8orf76 (ENSMLEG00000003268) #31	ZHX1 (ENSMLEG00000019573) #32	ATAD2 (ENSMLEG00000040940) #33	ENSMLEG00000040954	NTAQ1 (ENSMLEG00000029918)	FBXO32 (ENSMLEG00000031804)	ENSMLEG00000005785
Rhinopithecus	ANCESTRAL SPECIES	652															ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26
Golden snub-nosed monkey	MODERN SPECIES	716																COL14A1 (ENSRROG00000028854) #21	MRPL13 (ENSRROG00000044613) #23	MTBP (ENSRROG00000033432) #24	SNTB1 (ENSRROG00000040862) #25	HAS2 (ENSRROG00000033682) #26
Black snub-nosed monkey	MODERN SPECIES	1332	CD22 (ENSRBIG00000022725)	MAG (ENSRBIG00000030642)	HAMP (ENSRBIG00000025955)	USF2 (ENSRBIG00000042506)	LSR (ENSRBIG00000029135)	FAM187B (ENSRBIG00000030393)	ENSRBIG00000031745	ENSRBIG00000034960	ENSRBIG00000034552	LGI4 (ENSRBIG00000044111)	FXYD3 (ENSRBIG00000006765)	HPN (ENSRBIG00000015559)	DSCC1 (ENSRBIG00000034294) #19	ENSRBIG00000030595	DEPTOR (ENSRBIG00000027804) #20	COL14A1 (ENSRBIG00000039734) #21	MRPL13 (ENSRBIG00000035341) #23	MTBP (ENSRBIG00000030968) #24	SNTB1 (ENSRBIG00000032687) #25
Hominoidea	ANCESTRAL SPECIES	14	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Hominidae	ANCESTRAL SPECIES	15	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	13	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Gorilla	MODERN SPECIES	21	UTP23 (ENSGGOG00000013203)	RAD21 (ENSGGOG00000011809)	AARD (ENSGGOG00000037421)	SLC30A8 (ENSGGOG00000016195)	MED30 (ENSGGOG00000009161)	ENSGGOG00000040327	SAMD12 (ENSGGOG00000001716)	ENSGGOG00000026046	COLEC10 (ENSGGOG00000007054) #14	ENSGGOG00000022309 #15	CCN3 (ENSGGOG00000002777) #16	ENPP2 (ENSGGOG00000002873) #17	TAF2 (ENSGGOG00000007483) #18	DSCC1 (ENSGGOG00000007503) #19	DEPTOR (ENSGGOG00000004394) #20	COL14A1 (ENSGGOG00000004015) #21	MRPL13 (ENSGGOG00000024629) #23	MTBP (ENSGGOG00000009870) #24	SNTB1 (ENSGGOG00000009980) #25	ENSGGOG00000041935	DERL1 (ENSGGOG00000008910) #28	ENSGGOG00000040542	TBC1D31 (ENSGGOG00000009218) #29	FAM83A (ENSGGOG00000008194) #30	ENSGGOG00000026607	C8orf76 (ENSGGOG00000006649) #31	ZHX1 (ENSGGOG00000028565) #32	ATAD2 (ENSGGOG00000009390) #33	NTAQ1 (ENSGGOG00000010298)	FBXO32 (ENSGGOG00000002976)	KLHL38 (ENSGGOG00000006261)
Homo/Pan group	ANCESTRAL SPECIES	12	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Pan	ANCESTRAL SPECIES	11	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Bonobo	MODERN SPECIES	21	UTP23 (ENSPPAG00000028660)	RAD21 (ENSPPAG00000005971)	ENSPPAG00000043380	SLC30A8 (ENSPPAG00000018621)	MED30 (ENSPPAG00000034317)	EXT1 (ENSPPAG00000020428)	ENSPPAG00000040498	TNFRSF11B (ENSPPAG00000030377) #13	COLEC10 (ENSPPAG00000043531) #14	MAL2 (ENSPPAG00000015789) #15	CCN3 (ENSPPAG00000029589) #16	ENPP2 (ENSPPAG00000031694) #17	TAF2 (ENSPPAG00000034878) #18	DSCC1 (ENSPPAG00000017880) #19	DEPTOR (ENSPPAG00000040120) #20	COL14A1 (ENSPPAG00000041439) #21	MRPL13 (ENSPPAG00000043579) #23	MTBP (ENSPPAG00000027580) #24	SNTB1 (ENSPPAG00000035389) #25	HAS2 (ENSPPAG00000030801) #26	ZHX2 (ENSPPAG00000025743) #27	DERL1 (ENSPPAG00000043318) #28	ENSPPAG00000043324	TBC1D31 (ENSPPAG00000028732) #29	FAM83A (ENSPPAG00000026838) #30	ENSPPAG00000019044	C8orf76 (ENSPPAG00000034973) #31	ATAD2 (ENSPPAG00000042913) #33	NTAQ1 (ENSPPAG00000042607)	FBXO32 (ENSPPAG00000011718)	ENSPPAG00000030536
Chimpanzee	MODERN SPECIES	21	RAD21 (ENSPTRG00000020522)	AARD (ENSPTRG00000030949)	SLC30A8 (ENSPTRG00000020523)	MED30 (ENSPTRG00000020525)	EXT1 (ENSPTRG00000020526)	SAMD12 (ENSPTRG00000043300)	ENSPTRG00000050850	TNFRSF11B (ENSPTRG00000020528) #13	COLEC10 (ENSPTRG00000020529) #14	MAL2 (ENSPTRG00000043985) #15	CCN3 (ENSPTRG00000020531) #16	ENPP2 (ENSPTRG00000020534) #17	TAF2 (ENSPTRG00000020535) #18	DSCC1 (ENSPTRG00000020536) #19	DEPTOR (ENSPTRG00000020537) #20	COL14A1 (ENSPTRG00000020539) #21	MRPL13 (ENSPTRG00000020541) #23	MTBP (ENSPTRG00000020542) #24	SNTB1 (ENSPTRG00000020543) #25	HAS2 (ENSPTRG00000020544) #26	ZHX2 (ENSPTRG00000020545) #27	DERL1 (ENSPTRG00000020546) #28	ENSPTRG00000049929	TBC1D31 (ENSPTRG00000020547) #29	FAM83A (ENSPTRG00000020548) #30	ENSPTRG00000042960	C8H8orf76 (ENSPTRG00000020549) #31	ZHX1 (ENSPTRG00000020550) #32	ATAD2 (ENSPTRG00000020551) #33	NTAQ1 (ENSPTRG00000020554)	FBXO32 (ENSPTRG00000020555)
Human	MODERN SPECIES	20	UTP23 (ENSG00000147679)	RAD21 (ENSG00000164754)	AARD (ENSG00000205002)	SLC30A8 (ENSG00000164756)	MED30 (ENSG00000164758)	EXT1 (ENSG00000182197)	SAMD12 (ENSG00000177570)	TNFRSF11B (ENSG00000164761) #13	COLEC10 (ENSG00000184374) #14	MAL2 (ENSG00000147676) #15	CCN3 (ENSG00000136999) #16	ENPP2 (ENSG00000136960) #17	TAF2 (ENSG00000064313) #18	DSCC1 (ENSG00000136982) #19	DEPTOR (ENSG00000155792) #20	COL14A1 (ENSG00000187955) #21	MRPL13 (ENSG00000172172) #23	MTBP (ENSG00000172167) #24	SNTB1 (ENSG00000172164) #25	HAS2 (ENSG00000170961) #26	ZHX2 (ENSG00000178764) #27	DERL1 (ENSG00000136986) #28	TBC1D31 (ENSG00000156787) #29	FAM83A (ENSG00000147689) #30	C8orf76 (ENSG00000189376) #31	ZHX1-C8orf76 (ENSG00000259305)	ZHX1 (ENSG00000165156) #32	ATAD2 (ENSG00000156802) #33	NTAQ1 (ENSG00000156795)	FBXO32 (ENSG00000156804)	KLHL38 (ENSG00000175946)
Orangutan	MODERN SPECIES	21	UTP23 (ENSPPYG00000018831)	RAD21 (ENSPPYG00000018832)	AARD (ENSPPYG00000018833)	SLC30A8 (ENSPPYG00000018834)	MED30 (ENSPPYG00000018835)	EXT1 (ENSPPYG00000018836)	SAMD12 (ENSPPYG00000018837)	TNFRSF11B (ENSPPYG00000018838) #13	COLEC10 (ENSPPYG00000018839) #14	MAL2 (ENSPPYG00000030093) #15	CCN3 (ENSPPYG00000018841) #16	ENPP2 (ENSPPYG00000018842) #17	TAF2 (ENSPPYG00000018843) #18	DSCC1 (ENSPPYG00000018844) #19	DEPTOR (ENSPPYG00000018845) #20	COL14A1 (ENSPPYG00000018846) #21	MRPL13 (ENSPPYG00000018847) #23	MTBP (ENSPPYG00000018848) #24	SNTB1 (ENSPPYG00000018849) #25	HAS2 (ENSPPYG00000018850) #26	ZHX2 (ENSPPYG00000018851) #27	DERL1 (ENSPPYG00000018852) #28	TBC1D31 (ENSPPYG00000019034) #29	FAM83A (ENSPPYG00000018853) #30	ENSPPYG00000018854	C8orf76 (ENSPPYG00000018855) #31	ZHX1 (ENSPPYG00000018856) #32	ATAD2 (ENSPPYG00000018857) #33	NTAQ1 (ENSPPYG00000019969)	FBXO32 (ENSPPYG00000018858)	KLHL38 (ENSPPYG00000019017)
Gibbon	MODERN SPECIES	6	RAD21 (ENSNLEG00000004817)	AARD (ENSNLEG00000031855)	SLC30A8 (ENSNLEG00000027604)	MED30 (ENSNLEG00000004863)	EXT1 (ENSNLEG00000004870)	SAMD12 (ENSNLEG00000004875)	TNFRSF11B (ENSNLEG00000004882) #13	COLEC10 (ENSNLEG00000004892) #14	ENSNLEG00000004905 #15	CCN3 (ENSNLEG00000004910) #16	ENSNLEG00000028485	ENPP2 (ENSNLEG00000004918) #17	TAF2 (ENSNLEG00000004934) #18	DSCC1 (ENSNLEG00000005005) #19	DEPTOR (ENSNLEG00000005015) #20	COL14A1 (ENSNLEG00000005031) #21	MRPL13 (ENSNLEG00000028268) #23	MTBP (ENSNLEG00000005134) #24	SNTB1 (ENSNLEG00000005173) #25	ENSNLEG00000027184	HAS2 (ENSNLEG00000005191) #26	ENSNLEG00000033365	DERL1 (ENSNLEG00000005208) #28	ENSNLEG00000035564	TBC1D31 (ENSNLEG00000005223) #29	FAM83A (ENSNLEG00000005289) #30	ENSNLEG00000027797	C8orf76 (ENSNLEG00000005296) #31	ATAD2 (ENSNLEG00000005310) #33	NTAQ1 (ENSNLEG00000005332)	FBXO32 (ENSNLEG00000005338)
Platyrrhini	ANCESTRAL SPECIES	17	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000153335.b	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398
Cebidae	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000153335.b	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398
Marmoset	MODERN SPECIES	7	EXT1 (ENSCJAG00000005815)	ENSCJAG00000071342	SAMD12 (ENSCJAG00000046228)	ENSCJAG00000069822	ENSCJAG00000058000	TNFRSF11B (ENSCJAG00000005804) #13	COLEC10 (ENSCJAG00000047934) #14	MAL2 (ENSCJAG00000043157) #15	CCN3 (ENSCJAG00000005759) #16	ENSCJAG00000073292	ENPP2 (ENSCJAG00000005628) #17	TAF2 (ENSCJAG00000005547) #18	ENSCJAG00000081412	DSCC1 (ENSCJAG00000005518) #19	DEPTOR (ENSCJAG00000005497) #20	COL14A1 (ENSCJAG00000005370) #21	ENSCJAG00000005359 #23	MTBP (ENSCJAG00000005324) #24	SNTB1 (ENSCJAG00000005315) #25	ENSCJAG00000070598	ENSCJAG00000081290	HAS2 (ENSCJAG00000055536) #26	ENSCJAG00000085475	ZHX2 (ENSCJAG00000022247) #27	DERL1 (ENSCJAG00000038870) #28	TBC1D31 (ENSCJAG00000000953) #29	FAM83A (ENSCJAG00000074548) #30	C8orf76 (ENSCJAG00000035957) #31	ENSCJAG00000082897	ATAD2 (ENSCJAG00000000868) #33	NTAQ1 (ENSCJAG00000000865)
Cebidae_a	ANCESTRAL SPECIES	71	ENSGT00940000153117.A	ENSGT00940000154655.a.d	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000154550.a.f.e	ENSGT00940000153335.b	ENSGT00950000182893.a.a.a.b #27	ENSGT00910000147627	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00410000028285	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33
Bolivian squirrel monkey	MODERN SPECIES	95	UTP23 (ENSSBOG00000018914)	ENSSBOG00000030682	AARD (ENSSBOG00000029030)	SLC30A8 (ENSSBOG00000000987)	MED30 (ENSSBOG00000032654)	EXT1 (ENSSBOG00000034662)	SAMD12 (ENSSBOG00000029345)	TNFRSF11B (ENSSBOG00000027754) #13	COLEC10 (ENSSBOG00000026902) #14	MAL2 (ENSSBOG00000033924) #15	CCN3 (ENSSBOG00000029191) #16	ENPP2 (ENSSBOG00000014187) #17	TAF2 (ENSSBOG00000019229) #18	DSCC1 (ENSSBOG00000035314) #19	DEPTOR (ENSSBOG00000031834) #20	COL14A1 (ENSSBOG00000035062) #21	ENSSBOG00000026318	MRPL13 (ENSSBOG00000003037) #23	MTBP (ENSSBOG00000030533) #24	SNTB1 (ENSSBOG00000027128) #25	HAS2 (ENSSBOG00000023136) #26	ENSSBOG00000007050	ENSSBOG00000028129	ZHX2 (ENSSBOG00000007078) #27	DERL1 (ENSSBOG00000029704) #28	TBC1D31 (ENSSBOG00000027850) #29	FAM83A (ENSSBOG00000022424) #30	C8orf76 (ENSSBOG00000033229) #31	ATAD2 (ENSSBOG00000018969) #33	NTAQ1 (ENSSBOG00000026204)	DPH1 (ENSSBOG00000022429)
Capuchin	MODERN SPECIES	68	UTP23 (ENSCCAG00000030228)	RAD21 (ENSCCAG00000035186)	AARD (ENSCCAG00000028143)	SLC30A8 (ENSCCAG00000025975)	MED30 (ENSCCAG00000033344)	EXT1 (ENSCCAG00000002703)	SAMD12 (ENSCCAG00000033351)	TNFRSF11B (ENSCCAG00000036831) #13	COLEC10 (ENSCCAG00000024940) #14	MAL2 (ENSCCAG00000029707) #15	CCN3 (ENSCCAG00000032102) #16	ENPP2 (ENSCCAG00000029009) #17	TAF2 (ENSCCAG00000023816) #18	DSCC1 (ENSCCAG00000021579) #19	DEPTOR (ENSCCAG00000021712) #20	COL14A1 (ENSCCAG00000008634) #21	MRPL13 (ENSCCAG00000034544) #23	MTBP (ENSCCAG00000023289) #24	SNTB1 (ENSCCAG00000000789) #25	ENSCCAG00000036663	HAS2 (ENSCCAG00000038044) #26	ENSCCAG00000017303	ENSCCAG00000020980	ZHX2 (ENSCCAG00000019284) #27	DERL1 (ENSCCAG00000015592) #28	ENSCCAG00000004838	TBC1D31 (ENSCCAG00000020573) #29	FAM83A (ENSCCAG00000023697) #30	ENSCCAG00000024924	C8orf76 (ENSCCAG00000022186) #31	ENSCCAG00000034457
Mas night monkey	MODERN SPECIES	532										ENSANAG00000024993	ENSANAG00000027841	ENPP2 (ENSANAG00000026872) #17	TAF2 (ENSANAG00000033487) #18	DSCC1 (ENSANAG00000035333) #19	DEPTOR (ENSANAG00000024938) #20	COL14A1 (ENSANAG00000037683) #21	MRPL13 (ENSANAG00000033601) #23	MTBP (ENSANAG00000036099) #24	SNTB1 (ENSANAG00000026115) #25	HAS2 (ENSANAG00000021667) #26
Tarsier	MODERN SPECIES	4288																COL14A1 (ENSTSYG00000004302) #21
Euarchontoglires_A	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Tree shrew	MODERN SPECIES	4755																COL14A1 (ENSTBEG00000002515) #21	MRPL13 (ENSTBEG00000004571) #23	MTBP (ENSTBEG00000005077) #24	SNTB1 (ENSTBEG00000006369) #25
Glires	ANCESTRAL SPECIES	20	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797
Lagomorpha	ANCESTRAL SPECIES	46	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797	ENSGT00390000009543
Rabbit	MODERN SPECIES	14	ENSOCUG00000032175	ENSOCUG00000038625	ENSOCUG00000033817	EXT1 (ENSOCUG00000015191)	SAMD12 (ENSOCUG00000009066)	TNFRSF11B (ENSOCUG00000011150) #13	COLEC10 (ENSOCUG00000024595) #14	ENSOCUG00000036160	MAL2 (ENSOCUG00000025743) #15	CCN3 (ENSOCUG00000010693) #16	ENPP2 (ENSOCUG00000013534) #17	ENSOCUG00000008938	TAF2 (ENSOCUG00000017950) #18	DSCC1 (ENSOCUG00000017952) #19	DEPTOR (ENSOCUG00000007642) #20	COL14A1 (ENSOCUG00000015234) #21	MRPL13 (ENSOCUG00000016189) #23	MTBP (ENSOCUG00000016195) #24	SNTB1 (ENSOCUG00000016211) #25	ENSOCUG00000032205	ENSOCUG00000038104	HAS2 (ENSOCUG00000027106) #26	ENSOCUG00000035556	ENSOCUG00000027218	ZHX2 (ENSOCUG00000008550) #27	DERL1 (ENSOCUG00000009112) #28	ENSOCUG00000034321	TBC1D31 (ENSOCUG00000009119) #29	FAM83A (ENSOCUG00000015368) #30	C8orf76 (ENSOCUG00000009772) #31	ZHX1 (ENSOCUG00000009776) #32
Pika	MODERN SPECIES	1453												ENPP2 (ENSOPRG00000015551) #17	TAF2 (ENSOPRG00000015577) #18	DSCC1 (ENSOPRG00000015617) #19	DEPTOR (ENSOPRG00000015641) #20	COL14A1 (ENSOPRG00000015659) #21	MRPL13 (ENSOPRG00000015721) #23	MTBP (ENSOPRG00000015736) #24	SNTB1 (ENSOPRG00000015764) #25
Rodentia	ANCESTRAL SPECIES	19	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Rodentia_B	ANCESTRAL SPECIES	17	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Myomorpha	ANCESTRAL SPECIES	18	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Muroidea	ANCESTRAL SPECIES	14	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00940000165417	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00900000143171	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00900000143171	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00900000143171	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Northern American deer mouse	MODERN SPECIES	12	Rad21 (ENSPEMG00000014193)	ENSPEMG00000028192	Aard (ENSPEMG00000025931)	Slc30a8 (ENSPEMG00000011367)	Med30 (ENSPEMG00000010576)	Ext1 (ENSPEMG00000028423)	Samd12 (ENSPEMG00000003107)	Tnfrsf11b (ENSPEMG00000000383) #13	Colec10 (ENSPEMG00000028624) #14	Mal2 (ENSPEMG00000025010) #15	Ccn3 (ENSPEMG00000015443) #16	Enpp2 (ENSPEMG00000009296) #17	Taf2 (ENSPEMG00000017317) #18	Dscc1 (ENSPEMG00000014446) #19	Deptor (ENSPEMG00000015628) #20	Col14a1 (ENSPEMG00000000175) #21	Mrpl13 (ENSPEMG00000016375) #23	Mtbp (ENSPEMG00000010652) #24	Sntb1 (ENSPEMG00000008443) #25	Has2 (ENSPEMG00000026199) #26	ENSPEMG00000021092	Slc22a22 (ENSPEMG00000004863)	Zhx2 (ENSPEMG00000023804) #27	Derl1 (ENSPEMG00000029966) #28	Tbc1d31 (ENSPEMG00000021590) #29	Fam83a (ENSPEMG00000022808) #30	9130401M01Rik (ENSPEMG00000014822) #31	ENSPEMG00000012138	Atad2 (ENSPEMG00000023628)	ENSPEMG00000021840	Fbxo32 (ENSPEMG00000028760)
Prairie vole	MODERN SPECIES	2																Col14a1 (ENSMOCG00000019350) #21	Mrpl13 (ENSMOCG00000018794) #23	Mtbp (ENSMOCG00000011027) #24	Sntb1 (ENSMOCG00000016155) #25	Has2 (ENSMOCG00000018097) #26	Slc22a22 (ENSMOCG00000017838)	Zhx2 (ENSMOCG00000009147) #27	Derl1 (ENSMOCG00000018027) #28	Tbc1d31 (ENSMOCG00000022337) #29	Fam83a (ENSMOCG00000017206) #30	9130401M01Rik (ENSMOCG00000018536) #31	Atad2 (ENSMOCG00000020981)	Wdyhv1 (ENSMOCG00000017917)	Fbxo32 (ENSMOCG00000020393)	Klhl38 (ENSMOCG00000003679)	Anxa13 (ENSMOCG00000022952)
Cricetinae	ANCESTRAL SPECIES	38	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00900000143171	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a
Chinese hamster chok1gshd	MODERN SPECIES	385																Col14a1 (ENSCGRG00001014303) #21	ENSCGRG00001013201	Mrpl13 (ENSCGRG00001015700) #23	Mtbp (ENSCGRG00001016522) #24	Sntb1 (ENSCGRG00001017335) #25
Golden Hamster	MODERN SPECIES	752											Ccn3 (ENSMAUG00000017500) #16	ENSMAUG00000014910 #17	ENSMAUG00000013051 #17	Taf2 (ENSMAUG00000014878) #18	Deptor (ENSMAUG00000018277) #20	Col14a1 (ENSMAUG00000003745) #21	ENSMAUG00000009122 #23	Mtbp (ENSMAUG00000001175) #24	Sntb1 (ENSMAUG00000018920) #25	Has2 (ENSMAUG00000011279) #26	ENSMAUG00000014742	Zhx2 (ENSMAUG00000003002) #27	Derl1 (ENSMAUG00000020099) #28	Tbc1d31 (ENSMAUG00000012391) #29	Fam83a (ENSMAUG00000020788) #30	9130401M01Rik (ENSMAUG00000021035) #31	Zhx1 (ENSMAUG00000021328) #32	ENSMAUG00000018830	Atad2 (ENSMAUG00000021506)	Wdyhv1 (ENSMAUG00000000453)	Fbxo32 (ENSMAUG00000007704)
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00900000143171	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a
Mus	ANCESTRAL SPECIES	11	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00860000135745	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00940000165945	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435.c #31	ENSGT00390000011435.d.a #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00940000165417	ENSGT00390000014398	ENSGT00390000004915.a
Mus_A	ANCESTRAL SPECIES	13	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00860000135745	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00940000165945	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435.c #31	ENSGT00900000143171	ENSGT00390000011435.d.a #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00940000165417	ENSGT00390000014398
Mus_B	ANCESTRAL SPECIES	12	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00860000135745	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00940000165945	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435.c #31	ENSGT00900000143171	ENSGT00390000011435.d.a #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00940000165417	ENSGT00390000014398
Mouse	MODERN SPECIES	6	Utp23 (ENSMUSG00000022313)	Rad21 (ENSMUSG00000022314)	Aard (ENSMUSG00000068522)	Slc30a8 (ENSMUSG00000022315)	Med30 (ENSMUSG00000038622)	Ext1 (ENSMUSG00000061731)	Samd12 (ENSMUSG00000058656)	Tnfrsf11b (ENSMUSG00000063727) #13	Colec10 (ENSMUSG00000038591) #14	Mal2 (ENSMUSG00000024479) #15	Ccn3 (ENSMUSG00000037362) #16	Enpp2 (ENSMUSG00000022425) #17	Taf2 (ENSMUSG00000037343) #18	Dscc1 (ENSMUSG00000022422) #19	Deptor (ENSMUSG00000022419) #20	Col14a1 (ENSMUSG00000022371) #21	Mrpl13 (ENSMUSG00000022370) #23	Mtbp (ENSMUSG00000022369) #24	Sntb1 (ENSMUSG00000060429) #25	Has2 (ENSMUSG00000022367) #26	Slc22a22 (ENSMUSG00000022366)	Zhx2 (ENSMUSG00000071757) #27	Derl1 (ENSMUSG00000022365) #28	Tbc1d31 (ENSMUSG00000022364) #29	Fam83a (ENSMUSG00000051225) #30	9130401M01Rik (ENSMUSG00000101892) #31	Gm29394 (ENSMUSG00000022362)	Zhx1 (ENSMUSG00000022361) #32	Atad2 (ENSMUSG00000022360)	Wdyhv1 (ENSMUSG00000022359)	Fbxo32 (ENSMUSG00000022358)
Mus_C	ANCESTRAL SPECIES	28	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00860000135745	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00940000165945	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435.c #31	ENSGT00900000143171	ENSGT00390000011435.d.a #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00940000165417	ENSGT00390000014398
spretus	MODERN SPECIES	6	Aard (MGP_SPRETEiJ_G0020680)	MGP_SPRETEiJ_G0020681	Med30 (MGP_SPRETEiJ_G0020682)	Ext1 (MGP_SPRETEiJ_G0020683)	Samd12 (MGP_SPRETEiJ_G0020684)	MGP_SPRETEiJ_G0020685	Tnfrsf11b (MGP_SPRETEiJ_G0020686) #13	Colec10 (MGP_SPRETEiJ_G0020687) #14	Mal2 (MGP_SPRETEiJ_G0020688) #15	Ccn3 (MGP_SPRETEiJ_G0020689) #16	Enpp2 (MGP_SPRETEiJ_G0020690) #17	Taf2 (MGP_SPRETEiJ_G0020691) #18	Dscc1 (MGP_SPRETEiJ_G0020692) #19	MGP_SPRETEiJ_G0020693	Deptor (MGP_SPRETEiJ_G0020694) #20	Col14a1 (MGP_SPRETEiJ_G0020695) #21	Mrpl13 (MGP_SPRETEiJ_G0020696) #23	Mtbp (MGP_SPRETEiJ_G0020697) #24	Sntb1 (MGP_SPRETEiJ_G0020698) #25	Has2 (MGP_SPRETEiJ_G0020699) #26	Slc22a22 (MGP_SPRETEiJ_G0020700)	Zhx2 (MGP_SPRETEiJ_G0020701) #27	Derl1 (MGP_SPRETEiJ_G0020702) #28	Tbc1d31 (MGP_SPRETEiJ_G0020703) #29	Fam83a (MGP_SPRETEiJ_G0020704) #30	9130401M01Rik (MGP_SPRETEiJ_G0020705) #31	MGP_SPRETEiJ_G0020706 #31	Zhx1 (MGP_SPRETEiJ_G0020707) #32	Atad2 (MGP_SPRETEiJ_G0020708)	Wdyhv1 (MGP_SPRETEiJ_G0020709)	Fbxo32 (MGP_SPRETEiJ_G0020710)
Steppe mouse	MODERN SPECIES	2873												Taf2 (ENSMSIG00000004981) #18	Dscc1 (ENSMSIG00000004939) #19	Deptor (ENSMSIG00000004814) #20	ENSMSIG00000004805	Col14a1 (ENSMSIG00000004540) #21	Mrpl13 (ENSMSIG00000004496) #23	Mtbp (ENSMSIG00000004288) #24	Sntb1 (ENSMSIG00000004220) #25
Ryukyu mouse	MODERN SPECIES	6	Aard (MGP_CAROLIEiJ_G0019783)	MGP_CAROLIEiJ_G0019784	Med30 (MGP_CAROLIEiJ_G0019785)	Ext1 (MGP_CAROLIEiJ_G0019786)	Samd12 (MGP_CAROLIEiJ_G0019787)	MGP_CAROLIEiJ_G0019788	Tnfrsf11b (MGP_CAROLIEiJ_G0019789) #13	Colec10 (MGP_CAROLIEiJ_G0019790) #14	Mal2 (MGP_CAROLIEiJ_G0019791) #15	Ccn3 (MGP_CAROLIEiJ_G0019792) #16	Enpp2 (MGP_CAROLIEiJ_G0019793) #17	Taf2 (MGP_CAROLIEiJ_G0019794) #18	Dscc1 (MGP_CAROLIEiJ_G0019795) #19	MGP_CAROLIEiJ_G0019796	Deptor (MGP_CAROLIEiJ_G0019797) #20	Col14a1 (MGP_CAROLIEiJ_G0019798) #21	Mrpl13 (MGP_CAROLIEiJ_G0019799) #23	Mtbp (MGP_CAROLIEiJ_G0019800) #24	MGP_CAROLIEiJ_G0019801 #25	Has2 (MGP_CAROLIEiJ_G0019802) #26	Slc22a22 (MGP_CAROLIEiJ_G0019803)	Zhx2 (MGP_CAROLIEiJ_G0019804) #27	Derl1 (MGP_CAROLIEiJ_G0019805) #28	Tbc1d31 (MGP_CAROLIEiJ_G0019806) #29	Fam83a (MGP_CAROLIEiJ_G0019807) #30	9130401M01Rik (MGP_CAROLIEiJ_G0019808) #31	MGP_CAROLIEiJ_G0019809 #31	Zhx1 (MGP_CAROLIEiJ_G0019810) #32	Atad2 (MGP_CAROLIEiJ_G0019811)	MGP_CAROLIEiJ_G0019812	Fbxo32 (MGP_CAROLIEiJ_G0019813)
Shrew mouse	MODERN SPECIES	8	Aard (MGP_PahariEiJ_G0019793)	Slc30a8 (MGP_PahariEiJ_G0019794)	Med30 (MGP_PahariEiJ_G0019795)	Ext1 (MGP_PahariEiJ_G0019796)	Samd12 (MGP_PahariEiJ_G0019797)	MGP_PahariEiJ_G0019798	Tnfrsf11b (MGP_PahariEiJ_G0019799) #13	Colec10 (MGP_PahariEiJ_G0019800) #14	Mal2 (MGP_PahariEiJ_G0019801) #15	Ccn3 (MGP_PahariEiJ_G0019802) #16	Enpp2 (MGP_PahariEiJ_G0019803) #17	Taf2 (MGP_PahariEiJ_G0019804) #18	Dscc1 (MGP_PahariEiJ_G0019805) #19	MGP_PahariEiJ_G0019806	Deptor (MGP_PahariEiJ_G0019807) #20	Col14a1 (MGP_PahariEiJ_G0019808) #21	Mrpl13 (MGP_PahariEiJ_G0019809) #23	Mtbp (MGP_PahariEiJ_G0019810) #24	Sntb1 (MGP_PahariEiJ_G0019811) #25	Has2 (MGP_PahariEiJ_G0019812) #26	Slc22a22 (MGP_PahariEiJ_G0019813)	Zhx2 (MGP_PahariEiJ_G0019814) #27	Derl1 (MGP_PahariEiJ_G0019815) #28	Tbc1d31 (MGP_PahariEiJ_G0019816) #29	Fam83a (MGP_PahariEiJ_G0019817) #30	MGP_PahariEiJ_G0019818 #31	MGP_PahariEiJ_G0019819 #31	Zhx1 (MGP_PahariEiJ_G0019820) #32	Atad2 (MGP_PahariEiJ_G0019821)	Wdyhv1 (MGP_PahariEiJ_G0019822)	Fbxo32 (MGP_PahariEiJ_G0019823)
Rat	MODERN SPECIES	17	Slc30a8 (ENSRNOG00000004747)	Med30 (ENSRNOG00000004844)	Ext1 (ENSRNOG00000024886)	Samd12 (ENSRNOG00000043390)	LOC120093654 (ENSRNOG00000013191)	Tnfrsf11b (ENSRNOG00000008336) #13	Colec10 (ENSRNOG00000008591) #14	Mal2 (ENSRNOG00000008615) #15	Ccn3 (ENSRNOG00000008697) #16	Enpp2 (ENSRNOG00000004089) #17	Taf2 (ENSRNOG00000034022) #18	Dscc1 (ENSRNOG00000026502) #19	LOC100359421 (ENSRNOG00000032401)	ENSRNOG00000069733	Deptor (ENSRNOG00000004328) #20	Col14a1 (ENSRNOG00000026415) #21	Mrpl13 (ENSRNOG00000004401) #23	Mtbp (ENSRNOG00000004412) #24	Sntb1 (ENSRNOG00000004821) #25	Has2 (ENSRNOG00000004854) #26	ENSRNOG00000069184	Slc22a22 (ENSRNOG00000004958)	ENSRNOG00000063076	Zhx2 (ENSRNOG00000005417) #27	Derl1 (ENSRNOG00000005551) #28	Tbc1d31 (ENSRNOG00000006103) #29	LOC690840 (ENSRNOG00000071113)	Fam83a (ENSRNOG00000006251) #30	RGD1310852 (ENSRNOG00000006370) #31	Zhx1 (ENSRNOG00000006412) #32	ENSRNOG00000065001
Upper Galilee mountains blind mole rat	MODERN SPECIES	1022	ENSNGAG00000004542	Rad21 (ENSNGAG00000018620)	Aard (ENSNGAG00000015627)	Slc30a8 (ENSNGAG00000012419)	Med30 (ENSNGAG00000023804)	Ext1 (ENSNGAG00000020736)	ENSNGAG00000000730	Tnfrsf11b (ENSNGAG00000023795) #13	Colec10 (ENSNGAG00000020596) #14	Mal2 (ENSNGAG00000024116) #15	Ccn3 (ENSNGAG00000012632) #16	Enpp2 (ENSNGAG00000021370) #17	Taf2 (ENSNGAG00000019427) #18	Dscc1 (ENSNGAG00000023678) #19	Deptor (ENSNGAG00000014951) #20	Col14a1 (ENSNGAG00000024211) #21	Mrpl13 (ENSNGAG00000024334) #23	Mtbp (ENSNGAG00000006793) #24	Sntb1 (ENSNGAG00000017326) #25	ENSNGAG00000022494	Has2 (ENSNGAG00000013602) #26	Slc22a22 (ENSNGAG00000009950)	Zhx2 (ENSNGAG00000012411) #27	Derl1 (ENSNGAG00000011283) #28	Tbc1d31 (ENSNGAG00000007780) #29	Fam83a (ENSNGAG00000015485) #30	9130401M01Rik (ENSNGAG00000021667) #31	Zhx1 (ENSNGAG00000023759) #32	ENSNGAG00000007721	ENSNGAG00000023313 #33	Wdyhv1 (ENSNGAG00000023071)
Lesser Egyptian jerboa	MODERN SPECIES	83	ENSJJAG00000004609	ENSJJAG00000001121	Slc30a8 (ENSJJAG00000022484)	Med30 (ENSJJAG00000022063)	ENSJJAG00000019753	ENSJJAG00000009708	Samd12 (ENSJJAG00000007485)	Tnfrsf11b (ENSJJAG00000019893) #13	Colec10 (ENSJJAG00000018490) #14	ENSJJAG00000017967 #15	Ccn3 (ENSJJAG00000020730) #16	Enpp2 (ENSJJAG00000001919) #17	Taf2 (ENSJJAG00000017199) #18	ENSJJAG00000011344 #19	Deptor (ENSJJAG00000007358) #20	Col14a1 (ENSJJAG00000000842) #21	Mrpl13 (ENSJJAG00000019308) #23	Mtbp (ENSJJAG00000011898) #24	Sntb1 (ENSJJAG00000005003) #25	ENSJJAG00000000441	ENSJJAG00000000344	Has2 (ENSJJAG00000000159) #26	Slc22a22 (ENSJJAG00000019774)	Zhx2 (ENSJJAG00000000990) #27	Derl1 (ENSJJAG00000009381) #28	Tbc1d31 (ENSJJAG00000024386) #29	Fam83a (ENSJJAG00000019316) #30	9130401M01Rik (ENSJJAG00000018277) #31	Zhx1 (ENSJJAG00000017221) #32	ENSJJAG00000019614 #33	ENSJJAG00000018072
Kangaroo rat	MODERN SPECIES	470		Eif3h (ENSDORG00000005949)	ENSDORG00000029316	ENSDORG00000005950	Rad21 (ENSDORG00000005253)	ENSDORG00000029035	Med30 (ENSDORG00000009874)	Tnfrsf11b (ENSDORG00000026840) #13	Colec10 (ENSDORG00000004545) #14	Mal2 (ENSDORG00000023499) #15	Ccn3 (ENSDORG00000008673) #16	Enpp2 (ENSDORG00000004750) #17	Taf2 (ENSDORG00000011788) #18	Dscc1 (ENSDORG00000011184) #19	Deptor (ENSDORG00000028412) #20	Col14a1 (ENSDORG00000016651) #21	Mrpl13 (ENSDORG00000016654) #23	ENSDORG00000023197	Mtbp (ENSDORG00000013351) #24	Sntb1 (ENSDORG00000029258) #25	Has2 (ENSDORG00000006059) #26	Zhx2 (ENSDORG00000014490) #27	Derl1 (ENSDORG00000016557) #28	Tbc1d31 (ENSDORG00000016559) #29	Fam83a (ENSDORG00000001227) #30	9130401M01Rik (ENSDORG00000026000) #31	Zhx1 (ENSDORG00000014737) #32	ENSDORG00000011850 #33	Wdyhv1 (ENSDORG00000002494)	Fbxo32 (ENSDORG00000002914)	Klhl38 (ENSDORG00000000023)
Rodentia_A	ANCESTRAL SPECIES	18	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Sciuridae	ANCESTRAL SPECIES	17	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Marmotini	ANCESTRAL SPECIES	10	ENSGT00940000154655.a	ENSGT01070000253911	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Marmotini_b	ANCESTRAL SPECIES	6	ENSGT00940000154655.a	ENSGT01070000253911	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.d	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Arctic ground squirrel	MODERN SPECIES	128	RAD21 (ENSUPAG00010018144)	ENSUPAG00010018138	AARD (ENSUPAG00010018136)	SLC30A8 (ENSUPAG00010018123)	MED30 (ENSUPAG00010018114)	EXT1 (ENSUPAG00010018101)	SAMD12 (ENSUPAG00010018097)	TNFRSF11B (ENSUPAG00010018091) #13	COLEC10 (ENSUPAG00010018089) #14	MAL2 (ENSUPAG00010018087) #15	CCN3 (ENSUPAG00010018080) #16	ENPP2 (ENSUPAG00010018003) #17	TAF2 (ENSUPAG00010017939) #18	DSCC1 (ENSUPAG00010017916) #19	DEPTOR (ENSUPAG00010017897) #20	COL14A1 (ENSUPAG00010017737) #21	MRPL13 (ENSUPAG00010017724) #23
Squirrel	MODERN SPECIES	70	UTP23 (ENSSTOG00000001411)	RAD21 (ENSSTOG00000014316)	AARD (ENSSTOG00000030141)	SLC30A8 (ENSSTOG00000010500)	MED30 (ENSSTOG00000000638)	EXT1 (ENSSTOG00000015593)	SAMD12 (ENSSTOG00000021964)	TNFRSF11B (ENSSTOG00000009482) #13	COLEC10 (ENSSTOG00000001872) #14	MAL2 (ENSSTOG00000010053) #15	CCN3 (ENSSTOG00000010067) #16	ENPP2 (ENSSTOG00000001935) #17	TAF2 (ENSSTOG00000013027) #18	DSCC1 (ENSSTOG00000013838) #19	DEPTOR (ENSSTOG00000013845) #20	COL14A1 (ENSSTOG00000025510) #21	MRPL13 (ENSSTOG00000014264) #23	MTBP (ENSSTOG00000008750) #24	SNTB1 (ENSSTOG00000008785) #25	HAS2 (ENSSTOG00000015152) #26	ENSSTOG00000021688	ZHX2 (ENSSTOG00000011248) #27	DERL1 (ENSSTOG00000028368) #28	TBC1D31 (ENSSTOG00000003103) #29	FAM83A (ENSSTOG00000003122) #30	C8orf76 (ENSSTOG00000003135) #31	ENSSTOG00000034583	ZHX1 (ENSSTOG00000016571) #32	ATAD2 (ENSSTOG00000014877) #33	NTAQ1 (ENSSTOG00000014890)	FBXO32 (ENSSTOG00000001801)
Alpin marmot	MODERN SPECIES	18	ENSMMMG00000000094	ENSMMMG00000000117	SLC30A8 (ENSMMMG00000000163)	MED30 (ENSMMMG00000000191)	EXT1 (ENSMMMG00000000213)	SAMD12 (ENSMMMG00000000256)	ENSMMMG00000000274	TNFRSF11B (ENSMMMG00000000286) #13	COLEC10 (ENSMMMG00000000318) #14	MAL2 (ENSMMMG00000000338) #15	CCN3 (ENSMMMG00000000353) #16	ENPP2 (ENSMMMG00000000388) #17	TAF2 (ENSMMMG00000000650) #18	DSCC1 (ENSMMMG00000000722) #19	DEPTOR (ENSMMMG00000000753) #20	COL14A1 (ENSMMMG00000000811) #21	ENSMMMG00000001068	ENSMMMG00000001078	MTBP (ENSMMMG00000001106) #24	SNTB1 (ENSMMMG00000001178) #25	HAS2 (ENSMMMG00000001210) #26	ENSMMMG00000001230	ZHX2 (ENSMMMG00000001255) #27	DERL1 (ENSMMMG00000001262) #28	TBC1D31 (ENSMMMG00000001287) #29	ENSMMMG00000001346	FAM83A (ENSMMMG00000001355) #30	C8orf76 (ENSMMMG00000001373) #31	ZHX1 (ENSMMMG00000001392) #32	ATAD2 (ENSMMMG00000001397) #33	NTAQ1 (ENSMMMG00000001457)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005002391	RAD21 (ENSSVLG00005002416)	AARD (ENSSVLG00005002450)	SLC30A8 (ENSSVLG00005002466)	MED30 (ENSSVLG00005002500)	EXT1 (ENSSVLG00005002516)	SAMD12 (ENSSVLG00005002548)	TNFRSF11B (ENSSVLG00005002562) #13	COLEC10 (ENSSVLG00005002580) #14	MAL2 (ENSSVLG00005002595) #15	CCN3 (ENSSVLG00005002612) #16	ENPP2 (ENSSVLG00005002697) #17	TAF2 (ENSSVLG00005002941) #18	DSCC1 (ENSSVLG00005002956) #19	DEPTOR (ENSSVLG00005002977) #20	COL14A1 (ENSSVLG00005003119) #21	ENSSVLG00005003470 #23	MTBP (ENSSVLG00005003515) #24	SNTB1 (ENSSVLG00005003561) #25	HAS2 (ENSSVLG00005003574) #26	ENSSVLG00005003592	ZHX2 (ENSSVLG00005003642) #27	DERL1 (ENSSVLG00005003662) #28	TBC1D31 (ENSSVLG00005003869) #29	FAM83A (ENSSVLG00005004247) #30	C8orf76 (ENSSVLG00005004291) #31	ZHX1 (ENSSVLG00005004318) #32	ATAD2 (ENSSVLG00005004339) #33	NTAQ1 (ENSSVLG00005004381)	FBXO32 (ENSSVLG00005004413)	KLHL38 (ENSSVLG00005004450)
Hystricomorpha	ANCESTRAL SPECIES	12	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000155788	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145
Hystricomorpha_a	ANCESTRAL SPECIES	9	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420.c.a #18	ENSGT00390000000420.d #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000155788	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00390000013853	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145
Guinea pig	MODERN SPECIES		ENSCPOG00000032701	TRPS1 (ENSCPOG00000008178)	EIF3H (ENSCPOG00000015366)	UTP23 (ENSCPOG00000034561)	RAD21 (ENSCPOG00000013244)	MED30 (ENSCPOG00000037565)	EXT1 (ENSCPOG00000013024)	SAMD12 (ENSCPOG00000002892)	TNFRSF11B (ENSCPOG00000011271) #13	COLEC10 (ENSCPOG00000038012) #14	MAL2 (ENSCPOG00000037155) #15	CCN3 (ENSCPOG00000040005) #16	ENPP2 (ENSCPOG00000015234) #17	TAF2 (ENSCPOG00000014135) #18	DEPTOR (ENSCPOG00000013492) #20	COL14A1 (ENSCPOG00000008500) #21	MRPL13 (ENSCPOG00000005791) #23	MTBP (ENSCPOG00000005797) #24	SNTB1 (ENSCPOG00000005807) #25	GRHL2 (ENSCPOG00000005630)	NCALD (ENSCPOG00000039689)	RRM2B (ENSCPOG00000011429)	UBR5 (ENSCPOG00000009637)	ODF1 (ENSCPOG00000012742)	KLF10 (ENSCPOG00000011105)	AZIN1 (ENSCPOG00000015536)	ATP6V1C1 (ENSCPOG00000009966)	BAALC (ENSCPOG00000039194)	FZD6 (ENSCPOG00000012281)	CTHRC1 (ENSCPOG00000012284)	SLC25A32 (ENSCPOG00000033503)
Hystricomorpha_b	ANCESTRAL SPECIES	25	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420.c.a #18	ENSGT00390000000420.d #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00940000155788	ENSGT00940000158862	ENSGT00390000013305.a.b	ENSGT00940000156357	ENSGT00440000038909	ENSGT00940000159405	ENSGT00950000182995.e.b	ENSGT00390000004263.a	ENSGT00940000158485	ENSGT00390000018094	ENSGT00920000149145	ENSGT00390000005711
Long-tailed chinchilla	MODERN SPECIES	124	EIF3H (ENSCLAG00000004299)	ENSCLAG00000005108	RAD21 (ENSCLAG00000005294)	SLC30A8 (ENSCLAG00000004261)	MED30 (ENSCLAG00000006087)	EXT1 (ENSCLAG00000007554)	SAMD12 (ENSCLAG00000008293)	TNFRSF11B (ENSCLAG00000009388) #13	COLEC10 (ENSCLAG00000010463) #14	MAL2 (ENSCLAG00000010667) #15	CCN3 (ENSCLAG00000010921) #16	ENPP2 (ENSCLAG00000006503) #17	ENSCLAG00000009350 #18	ENSCLAG00000005610 #19	DEPTOR (ENSCLAG00000006264) #20	COL14A1 (ENSCLAG00000012798) #21	MRPL13 (ENSCLAG00000005646) #23	MTBP (ENSCLAG00000005869) #24	SNTB1 (ENSCLAG00000007591) #25	GRHL2 (ENSCLAG00000004852)	NCALD (ENSCLAG00000005101)	RRM2B (ENSCLAG00000005652)	UBR5 (ENSCLAG00000005604)	ODF1 (ENSCLAG00000009658)	KLF10 (ENSCLAG00000006194)	Azin1 (ENSCLAG00000006685)	ATP6V1C1 (ENSCLAG00000007454)	FZD6 (ENSCLAG00000004386)	ENSCLAG00000004942	SLC25A32 (ENSCLAG00000005938)	DCAF13 (ENSCLAG00000006565)
Degu	MODERN SPECIES	189													TAF2 (ENSODEG00000001178) #18	ENSODEG00000001151 #19	DEPTOR (ENSODEG00000001135) #20	COL14A1 (ENSODEG00000000812) #21	ENSODEG00000001980	MRPL13 (ENSODEG00000001950) #23	MTBP (ENSODEG00000001856) #24	SNTB1 (ENSODEG00000001798) #25	GRHL2 (ENSODEG00000001720)	NCALD (ENSODEG00000001634)	ENSODEG00000001601	ENSODEG00000001583	UBR5 (ENSODEG00000001200)	ODF1 (ENSODEG00000001029)	KLF10 (ENSODEG00000001013)	Azin1 (ENSODEG00000000999)	ENSODEG00000000974	FZD6 (ENSODEG00000000950)	ENSODEG00000000941
Naked mole-rat female	MODERN SPECIES	13	EXT1 (ENSHGLG00000005861)	SAMD12 (ENSHGLG00000007620)	ENSHGLG00000007295	ENSHGLG00000033698	TNFRSF11B (ENSHGLG00000004624) #13	COLEC10 (ENSHGLG00000043649) #14	MAL2 (ENSHGLG00000043918) #15	ENSHGLG00000045443	CCN3 (ENSHGLG00000005949) #16	ENSHGLG00000007040	ENPP2 (ENSHGLG00000009011) #17	TAF2 (ENSHGLG00000008618) #18	ENSHGLG00000020151	DSCC1 (ENSHGLG00000011220) #19	DEPTOR (ENSHGLG00000004514) #20	COL14A1 (ENSHGLG00000006792) #21	ENSHGLG00000005913	MRPL13 (ENSHGLG00000036413) #23	MTBP (ENSHGLG00000008315) #24	ENSHGLG00000004847 #25	ENSHGLG00000005032	ENSHGLG00000006146	ENSHGLG00000007536	ENSHGLG00000007855	RRM2B (ENSHGLG00000008176)	ODF1 (ENSHGLG00000004499)	KLF10 (ENSHGLG00000004544)	Azin1 (ENSHGLG00000004640)	ATP6V1C1 (ENSHGLG00000004692)	ENSHGLG00000034928	ENSHGLG00000046383
Atlantogenata	ANCESTRAL SPECIES	20	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.c.a	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Xenarthra	ANCESTRAL SPECIES	350								ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25
Armadillo	MODERN SPECIES	4194			SAMD12 (ENSDNOG00000044433)	TNFRSF11B (ENSDNOG00000000935) #13	COLEC10 (ENSDNOG00000041711) #14	MAL2 (ENSDNOG00000043237) #15	ENSDNOG00000048916	CCN3 (ENSDNOG00000010419) #16	ENSDNOG00000049643	ENPP2 (ENSDNOG00000005336) #17	TAF2 (ENSDNOG00000012454) #18	ENSDNOG00000031944	ENSDNOG00000045965	DSCC1 (ENSDNOG00000015659) #19	DEPTOR (ENSDNOG00000015660) #20	COL14A1 (ENSDNOG00000008826) #21	MRPL13 (ENSDNOG00000046226) #23	MTBP (ENSDNOG00000008935) #24	SNTB1 (ENSDNOG00000010265) #25	ENSDNOG00000047372	ENSDNOG00000044845	HAS2 (ENSDNOG00000046819) #26
Sloth	MODERN SPECIES	7001																COL14A1 (ENSCHOG00000007820) #21
Afrotheria	ANCESTRAL SPECIES	10	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.c.a	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Afrotheria_a	ANCESTRAL SPECIES	10	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00390000007815	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00940000157004.a.a.c.a	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00390000011435 #31	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647
Elephant	MODERN SPECIES	567	ENSLAFG00000013103	UTP23 (ENSLAFG00000001282)	RAD21 (ENSLAFG00000002810)	AARD (ENSLAFG00000000793)	SLC30A8 (ENSLAFG00000006391)	MED30 (ENSLAFG00000002551)	EXT1 (ENSLAFG00000028847)	TNFRSF11B (ENSLAFG00000002069) #13	COLEC10 (ENSLAFG00000005130) #14	MAL2 (ENSLAFG00000005133) #15	CCN3 (ENSLAFG00000005136) #16	ENPP2 (ENSLAFG00000017681) #17	TAF2 (ENSLAFG00000013191) #18	DSCC1 (ENSLAFG00000013202) #19	DEPTOR (ENSLAFG00000012963) #20	COL14A1 (ENSLAFG00000012970) #21	MRPL13 (ENSLAFG00000012985) #23	MTBP (ENSLAFG00000012989) #24	ENSLAFG00000013001 #25	HAS2 (ENSLAFG00000001028) #26	ENSLAFG00000029374	ZHX2 (ENSLAFG00000009019) #27	DERL1 (ENSLAFG00000009020) #28	ENSLAFG00000028078	TBC1D31 (ENSLAFG00000009023) #29	C8orf76 (ENSLAFG00000005882) #31	ZHX1 (ENSLAFG00000005884) #32	ENSLAFG00000000938 #33	NTAQ1 (ENSLAFG00000011793)	FBXO32 (ENSLAFG00000003343)	KLHL38 (ENSLAFG00000003345)
Hyrax	MODERN SPECIES	6589																COL14A1 (ENSPCAG00000001357) #21	MRPL13 (ENSPCAG00000001541) #23	MTBP (ENSPCAG00000001579) #24	SNTB1 (ENSPCAG00000001678) #25
Tenrec	MODERN SPECIES	7827																COL14A1 (ENSETEG00000017666) #21	MRPL13 (ENSETEG00000017682) #23	MTBP (ENSETEG00000017685) #24	SNTB1 (ENSETEG00000017692) #25
Platypus	MODERN SPECIES	15	UTP23 (ENSOANG00000004878)	RAD21 (ENSOANG00000004879)	ENSOANG00000042824	MED30 (ENSOANG00000047620)	EXT1 (ENSOANG00000012897)	SAMD12 (ENSOANG00000004272)	TNFRSF11B (ENSOANG00000009644) #13	ENSOANG00000050659	COLEC10 (ENSOANG00000021094) #14	MAL2 (ENSOANG00000036238) #15	ENSOANG00000037076 #16	ENPP2 (ENSOANG00000020134) #17	TAF2 (ENSOANG00000007240) #18	DSCC1 (ENSOANG00000038552) #19	DEPTOR (ENSOANG00000020439) #20	COL14A1 (ENSOANG00000045971) #21	ENSOANG00000032965	ENSOANG00000040033	F13B (ENSOANG00000011183)	ASPM (ENSOANG00000011184)	ZBTB41 (ENSOANG00000008986)	CRB1 (ENSOANG00000012013)	DENND1B (ENSOANG00000002724)	LHX9 (ENSOANG00000002003)	NEK7 (ENSOANG00000006321)	ATP6V1G3 (ENSOANG00000000424)	PTPRC (ENSOANG00000014342)	NR5A2 (ENSOANG00000005642)	ZNF281 (ENSOANG00000004857)	KIF14 (ENSOANG00000001490)	DDX59 (ENSOANG00000007164)
Anura	ANCESTRAL SPECIES	10	ENSGT00730000111042	ENSGT00940000153117.A	ENSGT00940000154655.a	ENSGT00940000160706	ENSGT00390000010887.a	ENSGT00940000155321	ENSGT00390000008161.a.b	ENSGT00940000155167.b.b #13	ENSGT00940000159374 #14	ENSGT00940000159514 #15	ENSGT00940000159963 #16	ENSGT00940000155778.A #17	ENSGT00390000000420 #18	ENSGT00390000017400 #19	ENSGT00520000055667 #20	ENSGT00940000153769.F #21	ENSGT00390000001515 #23	ENSGT00390000003305 #24	ENSGT00950000182863.A.b #25	ENSGT00390000010337.B.a.b #26	ENSGT00950000182893.a.a.a.b #27	ENSGT00530000063156.b #28	ENSGT00940000153859.b #29	ENSGT00940000160768 #30	ENSGT00950000182893.a.a.a.a #32	ENSGT00550000074694.a #33	ENSGT00390000014398	ENSGT00390000004915.a	ENSGT00940000157647	ENSGT00940000159797	ENSGT00390000009543
Frog	MODERN SPECIES	6	slc30a8 (ENSXETG00000027945)	med30 (ENSXETG00000020788)	ext1 (ENSXETG00000019136)	samd12 (ENSXETG00000040913)	tnfrsf11b (ENSXETG00000003142) #13	colec10 (ENSXETG00000003141) #14	mal2 (ENSXETG00000047456) #15	trpv4l.1 (ENSXETG00000032501)	ENSXETG00000041369	ccn3 (ENSXETG00000003135) #16	enpp2 (ENSXETG00000003134) #17	taf2 (ENSXETG00000003130) #18	mtbp (ENSXETG00000003129) #24	dscc1 (ENSXETG00000003126) #19	deptor (ENSXETG00000005764) #20	alox15b (ENSXETG00000005761) #21	mrpl13 (ENSXETG00000025658) #23	sntb1 (ENSXETG00000005757) #25	ENSXETG00000048202	has2 (ENSXETG00000006863) #26	zhx2 (ENSXETG00000048272) #27	derl1 (ENSXETG00000023186) #28	tbc1d31 (ENSXETG00000023189) #29	fam83a (ENSXETG00000023191) #30	zhx1 (ENSXETG00000023192) #32	ENSXETG00000049483	atad2 (ENSXETG00000023215)	ntaq1 (ENSXETG00000041404)	fbxo32 (ENSXETG00000023228)	klhl38 (ENSXETG00000023230)	anxa13 (ENSXETG00000023236)
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000007929	EXT1 (ENSLLEG00000007984)	ENSLLEG00000008057	SAMD12 (ENSLLEG00000008106)	TNFRSF11B (ENSLLEG00000008335) #13	ENSLLEG00000008432	COLEC10 (ENSLLEG00000008460) #14	MAL2 (ENSLLEG00000008525) #15	CCN3 (ENSLLEG00000008662) #16	ENSLLEG00000008717	ENPP2 (ENSLLEG00000008761) #17	TAF2 (ENSLLEG00000009855) #18	DSCC1 (ENSLLEG00000010356) #19	DEPTOR (ENSLLEG00000010482) #20	ENSLLEG00000010649	COL14A1 (ENSLLEG00000010684) #21	ENSLLEG00000011061	MRPL13 (ENSLLEG00000011088) #23	MTBP (ENSLLEG00000011171) #24	SNTB1 (ENSLLEG00000011455) #25	HAS2 (ENSLLEG00000011532) #26	ENSLLEG00000011606	ENSLLEG00000011623	ENSLLEG00000011645	ZHX2 (ENSLLEG00000011684) #27	DERL1 (ENSLLEG00000011704) #28	TBC1D31 (ENSLLEG00000011855) #29	ENSLLEG00000012230	FAM83A (ENSLLEG00000012255) #30	ZHX1 (ENSLLEG00000012308) #32	ATAD2 (ENSLLEG00000012369) #33
Coelacanth	MODERN SPECIES	435							COLEC10 (ENSLACG00000022130) #14	MAL2 (ENSLACG00000022298) #15	CCN3 (ENSLACG00000006914) #16	ENPP2 (ENSLACG00000007935) #17	TAF2 (ENSLACG00000010255) #18	ENSLACG00000010912	DSCC1 (ENSLACG00000011064) #19	ENSLACG00000011729	DEPTOR (ENSLACG00000012127) #20	COL14A1 (ENSLACG00000014465) #21	MRPL13 (ENSLACG00000015467) #23	ENSLACG00000015701	MTBP (ENSLACG00000015717) #24	SNTB1 (ENSLACG00000016207) #25	ENSLACG00000017083
Elephant shark	MODERN SPECIES	1672					washc5 (ENSCMIG00000011281)	sqlea (ENSCMIG00000011211)	ENSCMIG00000011200 #12	ENSCMIG00000011193 #13	si:ch211-93i7.4 (ENSCMIG00000011189) #14	MAL2 (ENSCMIG00000011187) #15	CCN3 (ENSCMIG00000011184) #16	ENPP2 (ENSCMIG00000011162) #17	taf2 (ENSCMIG00000010987) #18	dscc1 (ENSCMIG00000010923) #19	deptor (ENSCMIG00000010920) #20	COL14A1 (ENSCMIG00000010673) #21	mrpl13 (ENSCMIG00000010580) #23	MTBP (ENSCMIG00000010576) #24	sntb1 (ENSCMIG00000010570) #25
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000153769.F #21
Lamprey	MODERN SPECIES	3603												paqr8 (ENSPMAG00000000223)	ENSPMAG00000000222	rnf146 (ENSPMAG00000000220)	ENSPMAG00000000218	ENSPMAG00000000216 #21