Tetrapoda	ANCESTRAL SPECIES	56	ENSGT00390000018330	ENSGT00940000160950	ENSGT00940000163461.b	ENSGT00940000160318	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT01040000241001	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT01070000255540	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Amniota	ANCESTRAL SPECIES	19		ENSGT00940000159233	ENSGT00390000018330	ENSGT00940000160950	ENSGT00390000013764	ENSGT00940000156358	ENSGT00950000182982.B	ENSGT00940000161648	ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT01040000241001	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Mammalia	ANCESTRAL SPECIES	77	ENSGT00950000186009	ENSGT00720000108866	ENSGT00940000154090.b	ENSGT00940000158405	ENSGT00940000156142	ENSGT00940000160486	ENSGT00940000155006	ENSGT00940000158901	ENSGT00950000182893.a.a.b	ENSGT00940000160046	ENSGT01030000234633.B.b	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Theria	ANCESTRAL SPECIES	19														ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Eutheria	ANCESTRAL SPECIES	11	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Boreoeutheria	ANCESTRAL SPECIES	17	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Laurasiatheria	ANCESTRAL SPECIES	17	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Laurasiatheria_a	ANCESTRAL SPECIES	18	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Laurasiatheria_b	ANCESTRAL SPECIES	19	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Carnivora	ANCESTRAL SPECIES	20	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Caniformia	ANCESTRAL SPECIES		ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Canidae	ANCESTRAL SPECIES	19	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.a ##19	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Canis_lupus	ANCESTRAL SPECIES	13	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.a ##19	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00940000154661.a.a #28	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000017515.o.a #35	ENSGT00940000157014 #36	ENSGT00390000011067.A.jb #37
Dingo	MODERN SPECIES	343	ENSCAFG00020004771 #7	EFCAB8 (ENSCAFG00020004774) #8	SUN5 (ENSCAFG00020004779) #9	BPIFB2 (ENSCAFG00020004786) #10	BPIFB6 (ENSCAFG00020004797) #11	BPIFB3 (ENSCAFG00020004800) #12	BPIFB4 (ENSCAFG00020004810) #13	ENSCAFG00020004841 #14	ENSCAFG00020004846 #15	BPIFA3 (ENSCAFG00020004853) #16	BPIFA1 (ENSCAFG00020004859) #17	BPIFB1 (ENSCAFG00020004882) #18	ENSCAFG00020004889 #19	CDK5RAP1 (ENSCAFG00020004901) #20	SNTA1 (ENSCAFG00020004908) #21	CBFA2T2 (ENSCAFG00020004923) #22	NECAB3 (ENSCAFG00020004926) #23	ENSCAFG00020004963 #24	ACTL10 (ENSCAFG00020004965) #25	E2F1 (ENSCAFG00020004968) #26	PXMP4 (ENSCAFG00020004976) #27	ENSCAFG00020004983 #28	ZNF341 (ENSCAFG00020004998) #29	CHMP4B (ENSCAFG00020005042) #30	ENSCAFG00020005046 #31	RALY (ENSCAFG00020005069) #32	EIF2S2 (ENSCAFG00020005078) #33	ASIP (ENSCAFG00020005092) #34	ENSCAFG00020005093 #35	ITCH (ENSCAFG00020005109) #36	ENSCAFG00020005131 #37
Dog	MODERN SPECIES	16	SUN5 (ENSCAFG00845022906) #9	BPIFB2 (ENSCAFG00845022982) #10	BPIFB6 (ENSCAFG00845023097) #11	BPIFB3 (ENSCAFG00845023196) #12	BPIFB4 (ENSCAFG00845023291) #13	ENSCAFG00845023399 ##19	BPIFA2 (ENSCAFG00845023488) #14	ENSCAFG00845023553 #15	BPIFA3 (ENSCAFG00845023594) #16	BPIFA1 (ENSCAFG00845023690) #17	BPIFB1 (ENSCAFG00845023875) #18	ENSCAFG00845024007 #19	ENSCAFG00845024074	CDK5RAP1 (ENSCAFG00845024161) #20	CDK5RAP1 (ENSCAFG00845024407) #21	CBFA2T2 (ENSCAFG00845024493) #22	NECAB3 (ENSCAFG00845024784) #23	ENSCAFG00845025080 #24	ENSCAFG00845025127 #25	E2F1 (ENSCAFG00845025182) #26	TIMM8A (ENSCAFG00845025368) #28	ZNF341 (ENSCAFG00845025407) #29	CHMP4B (ENSCAFG00845025558) #30	RALY (ENSCAFG00845025648) #32	EIF2S2 (ENSCAFG00845025914) #33	ASIP (ENSCAFG00845015715) #34	ENSCAFG00845015756	ENSCAFG00845015788 #35	ITCH (ENSCAFG00845015881) #36	DYNLRB1 (ENSCAFG00845016154) #37	PIGU (ENSCAFG00845016278)
Red fox	MODERN SPECIES	79	DNMT3B (ENSVVUG00000005117)	EFCAB8 (ENSVVUG00000005061) #8	SUN5 (ENSVVUG00000005048) #9	BPIFB2 (ENSVVUG00000005019) #10	BPIFB6 (ENSVVUG00000005002) #11	BPIFB3 (ENSVVUG00000004985) #12	BPIFB4 (ENSVVUG00000004980) #13	ENSVVUG00000004976 #14	ENSVVUG00000004973 #15	BPIFA3 (ENSVVUG00000004970) #16	BPIFA1 (ENSVVUG00000004968) #17	BPIFB1 (ENSVVUG00000004954) #18	ENSVVUG00000004922	CDK5RAP1 (ENSVVUG00000004885) #20	SNTA1 (ENSVVUG00000004863) #21	CBFA2T2 (ENSVVUG00000004825) #22	ACTL10 (ENSVVUG00000004819) #25	NECAB3 (ENSVVUG00000004770) #23	E2F1 (ENSVVUG00000004757) #26	PXMP4 (ENSVVUG00000004749) #27	ZNF341 (ENSVVUG00000004600) #29	CHMP4B (ENSVVUG00000004581) #30	ENSVVUG00000004559	RALY (ENSVVUG00000004546) #32	ENSVVUG00000004519 #33	ENSVVUG00000004504 #34	AHCY (ENSVVUG00000004477)	ENSVVUG00000004473 #35	ENSVVUG00000004434	ITCH (ENSVVUG00000004411) #36	MAP1LC3A (ENSVVUG00000004393)
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Ursidae	ANCESTRAL SPECIES	14	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000170884	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.j #30	ENSGT00940000157601 #32	ENSGT00390000001804.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Ursus	ANCESTRAL SPECIES	1	ENSGT00940000156928	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.j #30	ENSGT00940000157601 #32	ENSGT00390000001804.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Polar bear	MODERN SPECIES	253	ASXL1 (ENSUMAG00000024178)	NOL4L (ENSUMAG00000024177)	COMMD7 (ENSUMAG00000024175)	DNMT3B (ENSUMAG00000024174)	MAPRE1 (ENSUMAG00000024172) ##7	EFCAB8 (ENSUMAG00000024168) #8	BPIFB2 (ENSUMAG00000024164) #10	BPIFB6 (ENSUMAG00000024161) #11	BPIFB4 (ENSUMAG00000024159) #13	ENSUMAG00000024158 #14	ENSUMAG00000024157 #15	BPIFA3 (ENSUMAG00000024153) #16	BPIFA1 (ENSUMAG00000024148) #17	BPIFB1 (ENSUMAG00000024143) #18	CDK5RAP1 (ENSUMAG00000024117) #20	CBFA2T2 (ENSUMAG00000024115) #22	ACTL10 (ENSUMAG00000024114) #25	NECAB3 (ENSUMAG00000024113) #23	E2F1 (ENSUMAG00000024112) #26	PXMP4 (ENSUMAG00000024110) #27	ZNF341 (ENSUMAG00000024108) #29	CHMP4B (ENSUMAG00000024107) #30	RALY (ENSUMAG00000024106) #32	EIF2S2 (ENSUMAG00000024105) #33
American black bear	MODERN SPECIES	3196																CBFA2T2 (ENSUAMG00000026308) #22	ENSUAMG00000026312 #23	ENSUAMG00000026314 #24	ACTL10 (ENSUAMG00000026315) #25	E2F1 (ENSUAMG00000026316) #26
Giant Panda	MODERN SPECIES	4	MAPRE1 (ENSAMEG00000013238) ##7	ENSAMEG00000024835	SUN5 (ENSAMEG00000013221) #9	BPIFB2 (ENSAMEG00000013181) #10	BPIFB6 (ENSAMEG00000013170) #11	BPIFB3 (ENSAMEG00000013151) #12	BPIFB4 (ENSAMEG00000013134) #13	ENSAMEG00000013119 #14	ENSAMEG00000013108 #15	BPIFA3 (ENSAMEG00000013101) #16	BPIFA1 (ENSAMEG00000013090) #17	BPIFB1 (ENSAMEG00000013065) #18	ENSAMEG00000013060	CDK5RAP1 (ENSAMEG00000013021) #20	SNTA1 (ENSAMEG00000012992) #21	CBFA2T2 (ENSAMEG00000008925) #22	ENSAMEG00000019179 #24	ACTL10 (ENSAMEG00000008990) #25	ENSAMEG00000008958 #23	ENSAMEG00000009004 #27	ZNF341 (ENSAMEG00000009012) #29	CHMP4B (ENSAMEG00000009038) #30	RALY (ENSAMEG00000009050) #32	EIF2S2 (ENSAMEG00000009071) #33	ASIP (ENSAMEG00000009091) #34	AHCY (ENSAMEG00000009105)	ITCH (ENSAMEG00000009134) #36	ENSAMEG00000009179 #37	MAP1LC3A (ENSAMEG00000009183)	PIGU (ENSAMEG00000009187)	TP53INP2 (ENSAMEG00000009209)
Mustelinae	ANCESTRAL SPECIES	11	ENSGT00930000151259	ENSGT00390000007560.q.a.d	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
American mink	MODERN SPECIES	17	MAPRE1 (ENSNVIG00000018328) ##7	ENSNVIG00000018325	ENSNVIG00000018321	SUN5 (ENSNVIG00000018291) #9	BPIFB2 (ENSNVIG00000018261) #10	BPIFB6 (ENSNVIG00000018242) #11	BPIFB3 (ENSNVIG00000018227) #12	BPIFB4 (ENSNVIG00000018205) #13	ENSNVIG00000018194	BPIFA3 (ENSNVIG00000018144) #16	BPIFA1 (ENSNVIG00000018087) #17	BPIFB1 (ENSNVIG00000018051) #18	ENSNVIG00000018027 #19	CDK5RAP1 (ENSNVIG00000017990) #20	SNTA1 (ENSNVIG00000017966) #21	CBFA2T2 (ENSNVIG00000017905) #22	ENSNVIG00000017895 #24	ACTL10 (ENSNVIG00000017892) #25	NECAB3 (ENSNVIG00000017859) #23	E2F1 (ENSNVIG00000017832) #26	PXMP4 (ENSNVIG00000017800) #27	ZNF341 (ENSNVIG00000017752) #29	CHMP4B (ENSNVIG00000017728) #30	RALY (ENSNVIG00000017666) #32	EIF2S2 (ENSNVIG00000017647) #33	ASIP (ENSNVIG00000017624) #34	AHCY (ENSNVIG00000017607)	ITCH (ENSNVIG00000017551) #36	ENSNVIG00000017524 #37	MAP1LC3A (ENSNVIG00000017515)	PIGU (ENSNVIG00000017474)
Ferret	MODERN SPECIES	180	ENSMPUG00000017862	BPIFB3 (ENSMPUG00000017861) #12	ENSMPUG00000017860	BPIFB4 (ENSMPUG00000017858) #13	ENSMPUG00000017857	ENSMPUG00000017856 #14	BPIFA3 (ENSMPUG00000017855) #16	BPIFA1 (ENSMPUG00000017848) #17	BPIFB1 (ENSMPUG00000017841) #18	ENSMPUG00000017839	ENSMPUG00000017838	ENSMPUG00000017837 #20	ENSMPUG00000017836 #20	ENSMPUG00000017835 #20	SNTA1 (ENSMPUG00000017832) #21	CBFA2T2 (ENSMPUG00000017831) #22	ENSMPUG00000017829 #24	NECAB3 (ENSMPUG00000017825) #23	E2F1 (ENSMPUG00000017824) #26	PXMP4 (ENSMPUG00000017823) #27	ZNF341 (ENSMPUG00000017822) #29	CHMP4B (ENSMPUG00000017821) #30	RALY (ENSMPUG00000017820) #32	EIF2S2 (ENSMPUG00000017819) #33	ASIP (ENSMPUG00000017818) #34	AHCY (ENSMPUG00000017817)	ITCH (ENSMPUG00000017816) #36	DYNLRB1 (ENSMPUG00000017815) #37	MAP1LC3A (ENSMPUG00000017814)	PIGU (ENSMPUG00000017813)	TP53INP2 (ENSMPUG00000017812)
Felidae	ANCESTRAL SPECIES	3	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014.d #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Panthera	ANCESTRAL SPECIES	2	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014.d #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Panthera_a	ANCESTRAL SPECIES	1	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263545.a.b.d.a #15	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014.d #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
leopard	MODERN SPECIES	32	DNMT3B (ENSPPRG00000014375)	MAPRE1 (ENSPPRG00000019866) #7	EFCAB8 (ENSPPRG00000020444) #8	SUN5 (ENSPPRG00000000075) #9	BPIFB2 (ENSPPRG00000000479) #10	BPIFB6 (ENSPPRG00000000780) #11	BPIFB3 (ENSPPRG00000002108) #12	BPIFB4 (ENSPPRG00000003010) #13	ENSPPRG00000003204 #15	BPIFA3 (ENSPPRG00000003416) #16	BPIFA1 (ENSPPRG00000004405) #17	BPIFB1 (ENSPPRG00000005709) #18	ENSPPRG00000006537 #19	CDK5RAP1 (ENSPPRG00000007463) #20	SNTA1 (ENSPPRG00000007797) #21	CBFA2T2 (ENSPPRG00000009192) #22	ACTL10 (ENSPPRG00000015321) #25	NECAB3 (ENSPPRG00000011300) #23	E2F1 (ENSPPRG00000011405) #26	PXMP4 (ENSPPRG00000011904) #27	ZNF341 (ENSPPRG00000013033) #29	CHMP4B (ENSPPRG00000013846) #30	RALY (ENSPPRG00000014593) #32	EIF2S2 (ENSPPRG00000015102) #33	ASIP (ENSPPRG00000015476) #34	AHCY (ENSPPRG00000015988)	ITCH (ENSPPRG00000017149) #36	DYNLRB1 (ENSPPRG00000018205) #37	MAP1LC3A (ENSPPRG00000020454)	PIGU (ENSPPRG00000022523)	TP53INP2 (ENSPPRG00000024794)
lion	MODERN SPECIES	3	MAPRE1 (ENSPLOG00000014581) ##7	EFCAB8 (ENSPLOG00000014634) #8	SUN5 (ENSPLOG00000014700) #9	BPIFB2 (ENSPLOG00000014965) #10	BPIFB6 (ENSPLOG00000015103) #11	BPIFB3 (ENSPLOG00000015334) #12	BPIFB4 (ENSPLOG00000015542) #13	BPIFA2 (ENSPLOG00000015684) #14	ENSPLOG00000015750 #15	BPIFA3 (ENSPLOG00000015799) #16	BPIFA1 (ENSPLOG00000015860) #17	BPIFB1 (ENSPLOG00000016033) #18	ENSPLOG00000016115 #19	CDK5RAP1 (ENSPLOG00000016219) #20	SNTA1 (ENSPLOG00000016287) #21	CBFA2T2 (ENSPLOG00000016366) #22	NECAB3 (ENSPLOG00000016443) #23	ENSPLOG00000016536 #24	ACTL10 (ENSPLOG00000016575) #25	E2F1 (ENSPLOG00000016585) #26	PXMP4 (ENSPLOG00000016650) #27	ZNF341 (ENSPLOG00000016700) #29	CHMP4B (ENSPLOG00000016734) #30	RALY (ENSPLOG00000016811) #32	EIF2S2 (ENSPLOG00000016881) #33	ASIP (ENSPLOG00000016919) #34	ENSPLOG00000016963	ITCH (ENSPLOG00000017081) #36	DYNLRB1 (ENSPLOG00000017257) #37	MAP1LC3A (ENSPLOG00000017340)	PIGU (ENSPLOG00000017369)
Tiger	MODERN SPECIES	25	MAPRE1 (ENSPTIG00000009541) ##7	EFCAB8 (ENSPTIG00000010965) #8	SUN5 (ENSPTIG00000013586) #9	BPIFB2 (ENSPTIG00000017316) #10	BPIFB6 (ENSPTIG00000017591) #11	BPIFB3 (ENSPTIG00000019519) #12	BPIFB4 (ENSPTIG00000021563) #13	BPIFA2 (ENSPTIG00000002366) #14	ENSPTIG00000006019 #15	BPIFA3 (ENSPTIG00000006775) #16	BPIFA1 (ENSPTIG00000008137) #17	BPIFB1 (ENSPTIG00000012791) #18	ENSPTIG00000013877 #19	CDK5RAP1 (ENSPTIG00000016645) #20	SNTA1 (ENSPTIG00000018658) #21	CBFA2T2 (ENSPTIG00000020570) #22	NECAB3 (ENSPTIG00000009683) #23	ACTL10 (ENSPTIG00000001807) #25	E2F1 (ENSPTIG00000016955) #26	PXMP4 (ENSPTIG00000018768) #27	ZNF341 (ENSPTIG00000019844) #29	CHMP4B (ENSPTIG00000021794) #30	RALY (ENSPTIG00000021910) #32	EIF2S2 (ENSPTIG00000022041) #33	ASIP (ENSPTIG00000022078) #34	AHCY (ENSPTIG00000022112)	ITCH (ENSPTIG00000005169) #36	DYNLRB1 (ENSPTIG00000007501) #37	MAP1LC3A (ENSPTIG00000008448)	PIGU (ENSPTIG00000009571)	TP53INP2 (ENSPTIG00000011147)
Cat	MODERN SPECIES	2	MAPRE1 (ENSFCAG00000007783) ##7	EFCAB8 (ENSFCAG00000037633) #8	SUN5 (ENSFCAG00000025943) #9	BPIFB2 (ENSFCAG00000015179) #10	BPIFB6 (ENSFCAG00000015181) #11	BPIFB3 (ENSFCAG00000015183) #12	BPIFB4 (ENSFCAG00000015185) #13	BPIFA2 (ENSFCAG00000043660) #14	ENSFCAG00000015188 #15	BPIFA3 (ENSFCAG00000022440) #16	BPIFA1 (ENSFCAG00000015193) #17	ENSFCAG00000030030	ENSFCAG00000049613	CDK5RAP1 (ENSFCAG00000015197) #20	SNTA1 (ENSFCAG00000026500) #21	CBFA2T2 (ENSFCAG00000030382) #22	CA3H20orf144 (ENSFCAG00000021903) #24	ACTL10 (ENSFCAG00000005015) #25	NECAB3 (ENSFCAG00000005010) #23	E2F1 (ENSFCAG00000005016) #26	ZNF341 (ENSFCAG00000018478) #29	CHMP4B (ENSFCAG00000025893) #30	EIF2S2 (ENSFCAG00000026834) #33	RALY (ENSFCAG00000025252) #32	ASIP (ENSFCAG00000011037) #34	AHCY (ENSFCAG00000007301)	ITCH (ENSFCAG00000008780) #36	DYNLRB1 (ENSFCAG00000002304) #37	MAP1LC3A (ENSFCAG00000022040)	PIGU (ENSFCAG00000002305)	TP53INP2 (ENSFCAG00000045855)
Laurasiatheria_c	ANCESTRAL SPECIES	17	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Equus	ANCESTRAL SPECIES	8	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.a ##19	ENSGT01100000263546.d.b.a.a.a.a.b.a #17	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.a #17	ENSGT01100000263546.d.b.b.a #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT01050000245239.e.b	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Horse	MODERN SPECIES	14	LATH (ENSECAG00000033314) ##19	BPIFA2 (ENSECAG00000000297) #14	ENSECAG00000044582 ##19	ENSECAG00000041946 #17	ENSECAG00000022575 #17	ENSECAG00000037593 #17	ENSECAG00000053425	ENSECAG00000014407 #18	ENSECAG00000027711 #16	ENSECAG00000020661 #16	ENSECAG00000041183 #17	ENSECAG00000023336 #18	ENSECAG00000000778 #19	SNTA1 (ENSECAG00000020715) #20	SNTA1 (ENSECAG00000057698) #21	CBFA2T2 (ENSECAG00000025052) #22	NECAB3 (ENSECAG00000012086) #23	ENSECAG00000049637 #24	ACTL10 (ENSECAG00000001232) #25	PXMP4 (ENSECAG00000024954) #27	ZNF341 (ENSECAG00000000301) #29	CHMP4B (ENSECAG00000008311) #30	RALY (ENSECAG00000012357) #32	EIF2S2 (ENSECAG00000050295) #33	ENSECAG00000040547 #33	ASIP (ENSECAG00000004241) #34	ENSECAG00000055038	ENSECAG00000020551	ENSECAG00000060369	ITCH (ENSECAG00000016216) #36	PIGU (ENSECAG00000017510)
Donkey	MODERN SPECIES	6	SUN5 (ENSEASG00005004397) #9	BPIFB2 (ENSEASG00005004416) #10	BPIFB6 (ENSEASG00005004435) #11	BPIFB3 (ENSEASG00005004457) #12	BPIFB4 (ENSEASG00005004467) #13	ENSEASG00005037736	BPIFA2 (ENSEASG00005007789) #14	ENSEASG00005034954 ##19	ENSEASG00005004350 #17	ENSEASG00005028659	BPIFA3 (ENSEASG00005008570) #16	BPIFB1 (ENSEASG00005026747) #18	ENSEASG00005036966 #19	CDK5RAP1 (ENSEASG00005008558) #20	SNTA1 (ENSEASG00005008555) #21	CBFA2T2 (ENSEASG00005008552) #22	NECAB3 (ENSEASG00005008543) #23	ENSEASG00005008547 #24	ENSEASG00005032176 #25	E2F1 (ENSEASG00005008538) #26	PXMP4 (ENSEASG00005035010) #27	ZNF341 (ENSEASG00005008514) #29	ENSEASG00005034253 #30	RALY (ENSEASG00005008501) #32	EIF2S2 (ENSEASG00005008498) #33	ASIP (ENSEASG00005024850) #34	ENSEASG00005033842	ENSEASG00005028379	ENSEASG00005037670	ITCH (ENSEASG00005007446) #36	ENSEASG00005036210 #37
Chiroptera	ANCESTRAL SPECIES	7	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Microchiroptera	ANCESTRAL SPECIES	6	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Microbat	MODERN SPECIES	997	MAPRE1 (ENSMLUG00000016403) ##7	SUN5 (ENSMLUG00000016408) #9	BPIFB2 (ENSMLUG00000016415) #10	ENSMLUG00000016424 #11	BPIFB3 (ENSMLUG00000016437) #12	BPIFB4 (ENSMLUG00000016442) #13	ENSMLUG00000016865 #14	BPIFA3 (ENSMLUG00000000658) #16	BPIFA1 (ENSMLUG00000000670) #17	ENSMLUG00000003811	ENSMLUG00000029998 #19	ENSMLUG00000003825	CDK5RAP1 (ENSMLUG00000005632) #20	SNTA1 (ENSMLUG00000005643) #21	ENSMLUG00000023956	CBFA2T2 (ENSMLUG00000015344) #22	NECAB3 (ENSMLUG00000015354) #23	ACTL10 (ENSMLUG00000023024) #25	E2F1 (ENSMLUG00000015371) #26	PXMP4 (ENSMLUG00000015379) #27	ZNF341 (ENSMLUG00000015386) #29	ENSMLUG00000027593	CHMP4B (ENSMLUG00000015397) #30	ENSMLUG00000005330 #32	EIF2S2 (ENSMLUG00000005335) #33	ASIP (ENSMLUG00000001062) #34	AHCY (ENSMLUG00000001070)	ITCH (ENSMLUG00000004798) #36	DYNLRB1 (ENSMLUG00000004820) #37	MAP1LC3A (ENSMLUG00000006105)	PIGU (ENSMLUG00000004825)
Greater horseshoe bat	MODERN SPECIES	15	NOL4L (ENSRFEG00010011006)	COMMD7 (ENSRFEG00010010850)	DNMT3B (ENSRFEG00010010315)	MAPRE1 (ENSRFEG00010010133) ##7	SUN5 (ENSRFEG00010009894) #9	BPIFB2 (ENSRFEG00010009739) #10	BPIFB6 (ENSRFEG00010009586) #11	BPIFB3 (ENSRFEG00010009403) #12	BPIFB4 (ENSRFEG00010009259) #13	BPIFA2 (ENSRFEG00010009183) #14	BPIFA3 (ENSRFEG00010009054) #16	ENSRFEG00010008900 #17	BPIFB1 (ENSRFEG00010008738) #18	CDK5RAP1 (ENSRFEG00010008644) #20	SNTA1 (ENSRFEG00010008565) #21	CBFA2T2 (ENSRFEG00010008347) #22	C20orf144 (ENSRFEG00010008315) #24	ACTL10 (ENSRFEG00010008302) #25	NECAB3 (ENSRFEG00010008150) #23	E2F1 (ENSRFEG00010008064) #26	PXMP4 (ENSRFEG00010008002) #27	ZNF341 (ENSRFEG00010007927) #29	ENSRFEG00010007891	CHMP4B (ENSRFEG00010007840) #30	RALY (ENSRFEG00010007771) #32	EIF2S2 (ENSRFEG00010007720) #33	ASIP (ENSRFEG00010007692) #34	AHCY (ENSRFEG00010007632)	ITCH (ENSRFEG00010007315) #36	MAP1LC3A (ENSRFEG00010007180)	PIGU (ENSRFEG00010007108)
Megabat	MODERN SPECIES	372													ENSPVAG00000010282	CDK5RAP1 (ENSPVAG00000010283) #20	SNTA1 (ENSPVAG00000010285) #21	CBFA2T2 (ENSPVAG00000010286) #22	NECAB3 (ENSPVAG00000010287) #23	C20orf144 (ENSPVAG00000010288) #24	E2F1 (ENSPVAG00000010290) #26	PXMP4 (ENSPVAG00000010291) #27	ZNF341 (ENSPVAG00000010292) #29	CHMP4B (ENSPVAG00000010293) #30
Artiodactyla	ANCESTRAL SPECIES	18	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Suina	ANCESTRAL SPECIES	9	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C	ENSGT00730000111114
Pig	MODERN SPECIES	8	ENSSSCG00000059506	SUN5 (ENSSSCG00000007256) #9	BPIFB2 (ENSSSCG00000029714) #10	BPIFB6 (ENSSSCG00000025052) #11	BPIFB3 (ENSSSCG00000026137) #12	BPIFB4 (ENSSSCG00000029295) #13	BPIFA2 (ENSSSCG00000007259) #14	BPIFA3 (ENSSSCG00000024787) #16	BPIFA1 (ENSSSCG00000007260) #17	BPIFB1 (ENSSSCG00000007261) #18	ENSSSCG00000007262 #19	ENSSSCG00000007263	CDK5RAP1 (ENSSSCG00000007264) #20	SNTA1 (ENSSSCG00000063004) #21	ENSSSCG00000034263	CBFA2T2 (ENSSSCG00000027410) #22	NECAB3 (ENSSSCG00000029626) #23	ENSSSCG00000047940 #24	ACTL10 (ENSSSCG00000044750) #25	E2F1 (ENSSSCG00000007268) #26	ENSSSCG00000034625 #27	ZNF341 (ENSSSCG00000021769) #29	CHMP4B (ENSSSCG00000007272) #30	RALY (ENSSSCG00000007275) #32	EIF2S2 (ENSSSCG00000026617) #33	ASIP (ENSSSCG00000053652) #34	AHCY (ENSSSCG00000007278)	ITCH (ENSSSCG00000007280) #36	ENSSSCG00000043574	ENSSSCG00000037510 #37	PIGU (ENSSSCG00000007282)
Chacoan peccary	MODERN SPECIES	801	MAPRE1 (ENSCWAG00000007693) ##7	ENSCWAG00000007672	SUN5 (ENSCWAG00000007557) #9	BPIFB2 (ENSCWAG00000007471) #10	BPIFB6 (ENSCWAG00000007416) #11	BPIFB3 (ENSCWAG00000007348) #12	BPIFB4 (ENSCWAG00000007278) #13	BPIFA2 (ENSCWAG00000007236) #14	ENSCWAG00000007185 #16	BPIFA1 (ENSCWAG00000007132) #17	BPIFB1 (ENSCWAG00000007056) #18	ENSCWAG00000007007	ENSCWAG00000006962	CDK5RAP1 (ENSCWAG00000006898) #20	SNTA1 (ENSCWAG00000006848) #21	CBFA2T2 (ENSCWAG00000006761) #22	ENSCWAG00000006723 #24	ACTL10 (ENSCWAG00000006716) #25	NECAB3 (ENSCWAG00000006683) #23	E2F1 (ENSCWAG00000006652) #26	PXMP4 (ENSCWAG00000006623) #27	ZNF341 (ENSCWAG00000006507) #29	ENSCWAG00000006485 #30	RALY (ENSCWAG00000006424) #32	EIF2S2 (ENSCWAG00000006369) #33	ASIP (ENSCWAG00000006347) #34	AHCY (ENSCWAG00000006316)	ITCH (ENSCWAG00000006169) #36	DYNLRB1 (ENSCWAG00000006128) #37	MAP1LC3A (ENSCWAG00000006108)	PIGU (ENSCWAG00000006023)
Artiodactyla_a	ANCESTRAL SPECIES	16	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Camelidae	ANCESTRAL SPECIES	10	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000167211	ENSGT00940000167979	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601.h #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Arabian camel	MODERN SPECIES	10	DNMT3B (ENSCDRG00005017779)	MAPRE1 (ENSCDRG00005019775) #7	EFCAB8 (ENSCDRG00005019793) #8	SUN5 (ENSCDRG00005008823) #9	BPIFB2 (ENSCDRG00005009158) #10	BPIFB6 (ENSCDRG00005009313) #11	BPIFB3 (ENSCDRG00005009566) #12	BPIFB4 (ENSCDRG00005009777) #13	ENSCDRG00005009985 #14	BPIFA3 (ENSCDRG00005010065) #16	BPIFA1 (ENSCDRG00005010253) #17	ENSCDRG00005010439 #18	ENSCDRG00005010639 #19	CDK5RAP1 (ENSCDRG00005010755) #20	SNTA1 (ENSCDRG00005010910) #21	CBFA2T2 (ENSCDRG00005011021) #22	NECAB3 (ENSCDRG00005011220) #23	C20orf144 (ENSCDRG00005011343) #24	ACTL10 (ENSCDRG00005011389) #25	PXMP4 (ENSCDRG00005011563) #27	ZNF341 (ENSCDRG00005011605) #29	CHMP4B (ENSCDRG00005012040) #30	ENSCDRG00005012091	ENSCDRG00005012122 #32	EIF2S2 (ENSCDRG00005012288) #33	ASIP (ENSCDRG00005012368) #34	AHCY (ENSCDRG00005012422)	ITCH (ENSCDRG00005012516) #36	DYNLRB1 (ENSCDRG00005012749) #37	ENSCDRG00005012808	PIGU (ENSCDRG00005012895)
Alpaca	MODERN SPECIES	2721																CBFA2T2 (ENSVPAG00000000361) #22	ENSVPAG00000000363 #23	ACTL10 (ENSVPAG00000000364) #25	E2F1 (ENSVPAG00000000365) #26	ZNF341 (ENSVPAG00000000368) #29	CHMP4B (ENSVPAG00000000371) #30	RALY (ENSVPAG00000000373) #32	EIF2S2 (ENSVPAG00000000375) #33
Artiodactyla_b	ANCESTRAL SPECIES	17	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cetacea	ANCESTRAL SPECIES	3	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.b #12	ENSGT00490000043329.a.a.a.pb ##7	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	1205																ENSPCTG00005018220 #22	ENSPCTG00005018164 #24	NECAB3 (ENSPCTG00005017982) #23	E2F1 (ENSPCTG00005017904) #26	PXMP4 (ENSPCTG00005017869) #27
Sperm whale	MODERN SPECIES	5	HCK (ENSPCTG00005013922)	TM9SF4 (ENSPCTG00005013852)	KIF3B (ENSPCTG00005013787)	ASXL1 (ENSPCTG00005013333)	NOL4L (ENSPCTG00005013151)	COMMD7 (ENSPCTG00005012985)	DNMT3B (ENSPCTG00005011472)	MAPRE1 (ENSPCTG00005011307) ##7	ENSPCTG00005011260	SUN5 (ENSPCTG00005011002) #9	BPIFB3 (ENSPCTG00005010805) #12	BPIFA3 (ENSPCTG00005010684) #16	BPIFA1 (ENSPCTG00005010475) #17	CDK5RAP1 (ENSPCTG00005010350) #20	SNTA1 (ENSPCTG00005010299) #21	ENSPCTG00005010096 #22	ZNF341 (ENSPCTG00005010042) #29	CHMP4B (ENSPCTG00005009997) #30	RALY (ENSPCTG00005009899) #32	EIF2S2 (ENSPCTG00005009850) #33	ITCH (ENSPCTG00005009484) #36	ENSPCTG00005009432	ENSPCTG00005009300	MAP1LC3A (ENSPCTG00005009227)	ENSPCTG00005009176	PIGU (ENSPCTG00005008727)	TP53INP2 (ENSPCTG00005008663)	NCOA6 (ENSPCTG00005008566)	GGT7 (ENSPCTG00005008516)	ACSS2 (ENSPCTG00005008347)	GSS (ENSPCTG00005008290)
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT00490000043329.a.a.a.pb ##7	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000153739.a.a.j	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT00490000043329.a.a.a.pb ##7	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000153739.a.a.j	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.pb ##7	ENSGT00490000043329.a.a.a.ob.b ##7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361.a #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Narwhal	MODERN SPECIES	299	POFUT1 (ENSMMNG00015003526)	KIF3B (ENSMMNG00015003500)	ASXL1 (ENSMMNG00015003413)	NOL4L (ENSMMNG00015003321)	COMMD7 (ENSMMNG00015003283)	DNMT3B (ENSMMNG00015002780)	ENSMMNG00015002532 ##7	ENSMMNG00015002504	SUN5 (ENSMMNG00015002432) #9	BPIFB4 (ENSMMNG00015002370) #13	BPIFA3 (ENSMMNG00015002319) #16	BPIFA1 (ENSMMNG00015002245) #17	BPIFB1 (ENSMMNG00015002195) #18	CDK5RAP1 (ENSMMNG00015002156) #20	SNTA1 (ENSMMNG00015002113) #21	CBFA2T2 (ENSMMNG00015002029) #22	ENSMMNG00015001984 #24	NECAB3 (ENSMMNG00015001933) #23	E2F1 (ENSMMNG00015001904) #26	PXMP4 (ENSMMNG00015001891) #27	ZNF341 (ENSMMNG00015001854) #29	ENSMMNG00015001817 #30	RALY (ENSMMNG00015001794) #32	EIF2S2 (ENSMMNG00015001772) #33	ENSMMNG00015001751 #34	AHCY (ENSMMNG00015001713)	ITCH (ENSMMNG00015001660) #36	DYNLRB1 (ENSMMNG00015001633) #37	MAP1LC3A (ENSMMNG00015001604)	PIGU (ENSMMNG00015001564)	TP53INP2 (ENSMMNG00015001534)
Beluga whale	MODERN SPECIES	36	PLAGL2 (ENSDLEG00000018773)	POFUT1 (ENSDLEG00000018766)	KIF3B (ENSDLEG00000018749)	ASXL1 (ENSDLEG00000018668)	NOL4L (ENSDLEG00000018639)	COMMD7 (ENSDLEG00000018629)	DNMT3B (ENSDLEG00000018581)	ENSDLEG00000018557 ##7	BPIFB4 (ENSDLEG00000018531) #13	BPIFA3 (ENSDLEG00000018509) #16	BPIFA1 (ENSDLEG00000018496) #17	ENSDLEG00000018481 #18	ENSDLEG00000018464 #20	ENSDLEG00000018457 #20	SNTA1 (ENSDLEG00000018449) #21	CBFA2T2 (ENSDLEG00000018440) #22	ENSDLEG00000018425 #24	ACTL10 (ENSDLEG00000018420) #25	NECAB3 (ENSDLEG00000018392) #23	E2F1 (ENSDLEG00000018330) #26	PXMP4 (ENSDLEG00000018317) #27	ZNF341 (ENSDLEG00000018304) #29	CHMP4B (ENSDLEG00000018298) #30	RALY (ENSDLEG00000018282) #32	EIF2S2 (ENSDLEG00000018274) #33	ASIP (ENSDLEG00000018261) #34	AHCY (ENSDLEG00000018252)	ITCH (ENSDLEG00000018226) #36	DYNLRB1 (ENSDLEG00000018207) #37	MAP1LC3A (ENSDLEG00000018191)	PIGU (ENSDLEG00000018167)
Vaquita	MODERN SPECIES	6	PLAGL2 (ENSPSNG00000005936)	POFUT1 (ENSPSNG00000005902)	KIF3B (ENSPSNG00000005861)	ASXL1 (ENSPSNG00000005728)	NOL4L (ENSPSNG00000005632)	COMMD7 (ENSPSNG00000005578)	DNMT3B (ENSPSNG00000005285)	MAPRE1 (ENSPSNG00000005125) ##7	ENSPSNG00000005099	SUN5 (ENSPSNG00000005025) #9	BPIFA3 (ENSPSNG00000004966) #16	BPIFA1 (ENSPSNG00000004902) #17	BPIFB1 (ENSPSNG00000004841) #18	CDK5RAP1 (ENSPSNG00000004778) #20	SNTA1 (ENSPSNG00000015499) #21	CBFA2T2 (ENSPSNG00000015283) #22	ENSPSNG00000015208 #24	NECAB3 (ENSPSNG00000015043) #23	E2F1 (ENSPSNG00000014974) #26	PXMP4 (ENSPSNG00000014910) #27	ZNF341 (ENSPSNG00000014477) #29	CHMP4B (ENSPSNG00000014408) #30	RALY (ENSPSNG00000014290) #32	EIF2S2 (ENSPSNG00000014204) #33	ASIP (ENSPSNG00000014123) #34	ENSPSNG00000014022	ITCH (ENSPSNG00000013334) #36	MAP1LC3A (ENSPSNG00000013092)	PIGU (ENSPSNG00000012993)	TP53INP2 (ENSPSNG00000012935)	ENSPSNG00000012910
Dolphin	MODERN SPECIES	2446																CBFA2T2 (ENSTTRG00000010094) #22	NECAB3 (ENSTTRG00000010095) #23	C20orf144 (ENSTTRG00000010097) #24	ACTL10 (ENSTTRG00000010098) #25	E2F1 (ENSTTRG00000010099) #26	PXMP4 (ENSTTRG00000010100) #27	ZNF341 (ENSTTRG00000010128) #29	CHMP4B (ENSTTRG00000010145) #30
Blue whale	MODERN SPECIES	6	NOL4L (ENSBMSG00010016482)	ENSBMSG00010016439	COMMD7 (ENSBMSG00010016369)	DNMT3B (ENSBMSG00010015879)	MAPRE1 (ENSBMSG00010015710) ##7	ENSBMSG00010015685	BPIFB2 (ENSBMSG00010015628) #10	BPIFB6 (ENSBMSG00010015545) #11	BPIFB3 (ENSBMSG00010015474) #12	BPIFB4 (ENSBMSG00010015330) #13	BPIFA3 (ENSBMSG00010015251) #16	BPIFA1 (ENSBMSG00010015165) #17	BPIFB1 (ENSBMSG00010015057) #18	CDK5RAP1 (ENSBMSG00010015008) #20	SNTA1 (ENSBMSG00010014974) #21	CBFA2T2 (ENSBMSG00010014897) #22	ENSBMSG00010014841	ENSBMSG00010014818 #24	ACTL10 (ENSBMSG00010014804) #25	NECAB3 (ENSBMSG00010014701) #23	E2F1 (ENSBMSG00010014642) #26	PXMP4 (ENSBMSG00010014607) #27	ZNF341 (ENSBMSG00010014577) #29	ENSBMSG00010014552 #30	RALY (ENSBMSG00010014524) #32	EIF2S2 (ENSBMSG00010014478) #33	ENSBMSG00010014441 #34	AHCY (ENSBMSG00010014387)	ENSBMSG00010014355	ENSBMSG00010014323	ITCH (ENSBMSG00010014131) #36
Pecora	DUPLICATION
Pecora	DUPLICATION
Pecora	ANCESTRAL SPECIES	9	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.t #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C	ENSGT00730000111114
Percora_a	ANCESTRAL SPECIES	10	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.t #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C	ENSGT00730000111114
Bovidae	ANCESTRAL SPECIES	10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Caprinae	ANCESTRAL SPECIES	21	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT00950000183604.b.a	ENSGT00950000183604.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Rambouillet Sheep	MODERN SPECIES	4	BPIFB6 (ENSOARG00020009171) #11	BPIFB3 (ENSOARG00020009266) #12	BPIFB4 (ENSOARG00020009376) #13	ENSOARG00020009477 #14	ENSOARG00020009537 #14	ENSOARG00020009595	ENSOARG00020009657	ENSOARG00020009694	ENSOARG00020009734 #14	BPIFA3 (ENSOARG00020009757) #16	BPIFA1 (ENSOARG00020009831) #17	ENSOARG00020010310 #19	CDK5RAP1 (ENSOARG00020010445) #20	SNTA1 (ENSOARG00020010934) #21	ENSOARG00020011013	ENSOARG00020011066 #22	NECAB3 (ENSOARG00020011215) #23	ENSOARG00020011959 #24	E2F1 (ENSOARG00020011997) #26	PXMP4 (ENSOARG00020012090) #27	ZNF341 (ENSOARG00020012178) #29	CHMP4B (ENSOARG00020012426) #30	RALY (ENSOARG00020012493) #32	ENSOARG00020012697 #33	AHCY (ENSOARG00020012830)	ITCH (ENSOARG00020013255) #36	DYNLRB1 (ENSOARG00020013544) #37	MAP1LC3A (ENSOARG00020013584)	PIGU (ENSOARG00020013640)	TP53INP2 (ENSOARG00020013838)	NCOA6 (ENSOARG00020013923)
Goat	MODERN SPECIES	4	BPIFB6 (ENSCHIG00000019460) #11	BPIFB3 (ENSCHIG00000023551) #12	BPIFB4 (ENSCHIG00000015953) #13	ENSCHIG00000009057	ENSCHIG00000001593	ENSCHIG00000021281	ENSCHIG00000014390 #14	ENSCHIG00000023902	ENSCHIG00000021482 #14	BPIFA3 (ENSCHIG00000019106) #16	BPIFA1 (ENSCHIG00000024834) #17	BPIFB1 (ENSCHIG00000017212) #18	ENSCHIG00000006775 #19	CDK5RAP1 (ENSCHIG00000026048) #20	SNTA1 (ENSCHIG00000026424) #21	ENSCHIG00000017263 #22	NECAB3 (ENSCHIG00000024415) #23	ENSCHIG00000024263 #24	ACTL10 (ENSCHIG00000002177) #25	E2F1 (ENSCHIG00000015683) #26	PXMP4 (ENSCHIG00000019935) #27	ZNF341 (ENSCHIG00000018677) #29	CHMP4B (ENSCHIG00000015320) #30	RALY (ENSCHIG00000026609) #32	ENSCHIG00000026317 #33	ENSCHIG00000012008	ASIP (ENSCHIG00000014323) #34	AHCY (ENSCHIG00000026741)	ITCH (ENSCHIG00000013191) #36	DYNLRB1 (ENSCHIG00000017947) #37	MAP1LC3A (ENSCHIG00000022203)
Bovinae	ANCESTRAL SPECIES	23	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.t #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37
Bos	ANCESTRAL SPECIES	24	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.t #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37
Bos_b	ANCESTRAL SPECIES	26	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b.a.a.a #14	ENSGT01100000263546.d.b.a.b.a.a.b #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00950000183010.a.b.a.a.a.a.b	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562.a.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37
Hybrid Bos Indicus	MODERN SPECIES	4	BPIFB3 (ENSBIXG00005027593) #12	BPIFB4 (ENSBIXG00005027645) #13	ENSBIXG00005027671 #14	ENSBIXG00005027683 #14	ENSBIXG00005027704	ENSBIXG00005005327 #14	BPIFA3 (ENSBIXG00005027808) #16	BPIFA1 (ENSBIXG00005027857) #17	ENSBIXG00005027873	BPIFB1 (ENSBIXG00005027890) #18	ENSBIXG00005027937 #19	ENSBIXG00005027971	CDK5RAP1 (ENSBIXG00005028076) #20	SNTA1 (ENSBIXG00005028108) #21	ENSBIXG00005004838	ENSBIXG00005028172 #22	ENSBIXG00005004852	ENSBIXG00005028229 #24	ACTL10 (ENSBIXG00005028235) #25	NECAB3 (ENSBIXG00005028280) #23	E2F1 (ENSBIXG00005028294) #26	ENSBIXG00005028326 #27	ZNF341 (ENSBIXG00005028356) #29	ENSBIXG00005004879 #30	RALY (ENSBIXG00005028479) #32	EIF2S2 (ENSBIXG00005006636) #33	ASIP (ENSBIXG00005004914) #34	AHCY (ENSBIXG00005028542)	ENSBIXG00005028582	ENSBIXG00005028645 #36	DYNLRB1 (ENSBIXG00005028646) #37
Cow	MODERN SPECIES	4	BPIFB3 (ENSBTAG00000038687) #12	BPIFB4 (ENSBTAG00000038412) #13	BPIFA2A (ENSBTAG00000009144) #14	ENSBTAG00000031375 #14	BPIFA2C (ENSBTAG00000031376) #14	ENSBTAG00000011704	BPIFA2B (ENSBTAG00000019752) #14	ENSBTAG00000031373	BPIFA3 (ENSBTAG00000006802) #16	BPIFA1 (ENSBTAG00000017098) #17	BPIFB1 (ENSBTAG00000015724) #18	BPIFB5 (ENSBTAG00000031361) #19	CDK5RAP1 (ENSBTAG00000018535) #20	ENSBTAG00000031354	SNTA1 (ENSBTAG00000000512) #21	ENSBTAG00000010131 #22	ENSBTAG00000053051	ENSBTAG00000053797	NECAB3 (ENSBTAG00000003946) #23	C13H20orf144 (ENSBTAG00000003962) #24	E2F1 (ENSBTAG00000003971) #26	PXMP4 (ENSBTAG00000038738) #27	ZNF341 (ENSBTAG00000039313) #29	CHMP4B (ENSBTAG00000013387) #30	RALY (ENSBTAG00000016524) #32	EIF2S2 (ENSBTAG00000005969) #33	ASIP (ENSBTAG00000034077) #34	AHCY (ENSBTAG00000018101)	ENSBTAG00000046623	ITCH (ENSBTAG00000000308) #36	DYNLRB1 (ENSBTAG00000006134) #37
Bos_a	ANCESTRAL SPECIES	7	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000170884	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Domestic yak	MODERN SPECIES	3	BPIFB6 (ENSBGRG00000005172) #11	BPIFB3 (ENSBGRG00000005308) #12	BPIFB4 (ENSBGRG00000005415) #13	ENSBGRG00000005450	ENSBGRG00000005469 #14	ENSBGRG00000005491 #14	ENSBGRG00000005545	ENSBGRG00000005555 #14	BPIFA3 (ENSBGRG00000005582) #16	BPIFA1 (ENSBGRG00000005622) #17	BPIFB1 (ENSBGRG00000005686) #18	ENSBGRG00000005792	CDK5RAP1 (ENSBGRG00000005894) #20	ENSBGRG00000006020	SNTA1 (ENSBGRG00000006075) #21	CBFA2T2 (ENSBGRG00000006122) #22	ENSBGRG00000006162	ENSBGRG00000006170	ENSBGRG00000006176 #22	NECAB3 (ENSBGRG00000006194) #23	C20orf144 (ENSBGRG00000006314) #24	ACTL10 (ENSBGRG00000006349) #25	E2F1 (ENSBGRG00000006368) #26	ENSBGRG00000006426 #27	ZNF341 (ENSBGRG00000006484) #29	ENSBGRG00000006672 #30	RALY (ENSBGRG00000006728) #32	ENSBGRG00000006852 #33	ENSBGRG00000006899	ASIP (ENSBGRG00000006937) #34	AHCY (ENSBGRG00000006978)
Wild yak	MODERN SPECIES	860	ENSBMUG00000024143	UBE2QL1 (ENSBMUG00000024147)	NSUN2 (ENSBMUG00000024440)	SRD5A1 (ENSBMUG00000024628)	TENT4A (ENSBMUG00000024650)	ENSBMUG00000024661	ENSBMUG00000024667 #14	ENSBMUG00000024685	BPIFA3 (ENSBMUG00000024694) #16	BPIFA1 (ENSBMUG00000024703) #17	BPIFB1 (ENSBMUG00000024706) #18	ENSBMUG00000024715	ENSBMUG00000024718	CDK5RAP1 (ENSBMUG00000024744) #20	SNTA1 (ENSBMUG00000024747) #21	ENSBMUG00000024759 #22	NECAB3 (ENSBMUG00000024769) #23	ACTL10 (ENSBMUG00000024774) #25	E2F1 (ENSBMUG00000024777) #26	ENSBMUG00000024790 #27	ZNF341 (ENSBMUG00000024798) #29	ENSBMUG00000024806 #30
American bison	MODERN SPECIES	3266			ENSBBBG00000018505	ENSBBBG00000018502 #14	ENSBBBG00000018490 #14	ENSBBBG00000004542	ENSBBBG00000004535	ENSBBBG00000018462 #14	ENSBBBG00000018447	BPIFA3 (ENSBBBG00000004515) #16	BPIFA1 (ENSBBBG00000018424) #17	BPIFB1 (ENSBBBG00000018409) #18	ENSBBBG00000009135	CDK5RAP1 (ENSBBBG00000018377) #20	SNTA1 (ENSBBBG00000018296) #21	ENSBBBG00000018285 #22	ENSBBBG00000018224	NECAB3 (ENSBBBG00000018216) #23	ENSBBBG00000004464 #24	ACTL10 (ENSBBBG00000018177) #25	E2F1 (ENSBBBG00000008832) #26	ENSBBBG00000004455 #27	ZNF341 (ENSBBBG00000018116) #29	CHMP4B (ENSBBBG00000004443) #30	RALY (ENSBBBG00000004441) #32	EIF2S2 (ENSBBBG00000004436) #33	ASIP (ENSBBBG00000018031) #34	AHCY (ENSBBBG00000018017)	ENSBBBG00000007314	ENSBBBG00000008776 #36	DYNLRB1 (ENSBBBG00000017935) #37
Yarkand deer	MODERN SPECIES	15	BPIFB2 (ENSCHYG00000018354) #10	BPIFB6 (ENSCHYG00000018569) #11	BPIFB3 (ENSCHYG00000018802) #12	BPIFB4 (ENSCHYG00000018989) #13	ENSCHYG00000019160	ENSCHYG00000019207 #14	ENSCHYG00000019281 #14	ENSCHYG00000019367	BPIFA3 (ENSCHYG00000019399) #16	BPIFA1 (ENSCHYG00000019488) #17	BPIFB1 (ENSCHYG00000019627) #18	CDK5RAP1 (ENSCHYG00000019777) #20	ENSCHYG00000020289 #19	ENSCHYG00000020441	SNTA1 (ENSCHYG00000020536) #21	CBFA2T2 (ENSCHYG00000020600) #22	ENSCHYG00000020718	NECAB3 (ENSCHYG00000020779) #23	ENSCHYG00000021007 #24	ACTL10 (ENSCHYG00000021085) #25	E2F1 (ENSCHYG00000021119) #26	PXMP4 (ENSCHYG00000021195) #27	ZNF341 (ENSCHYG00000021267) #29	CHMP4B (ENSCHYG00000021413) #30	RALY (ENSCHYG00000021487) #32	EIF2S2 (ENSCHYG00000021669) #33	ASIP (ENSCHYG00000021759) #34	ENSCHYG00000021816	ITCH (ENSCHYG00000021902) #36	DYNLRB1 (ENSCHYG00000022408) #37	MAP1LC3A (ENSCHYG00000022485)
Pecora	ANCESTRAL SPECIES																	ENSGT00950000183176.a.s.b #22
Percora_a	ANCESTRAL SPECIES																	ENSGT00950000183176.a.s.b #22
Bovidae	ANCESTRAL SPECIES	7	ENSGT00940000160091	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163.b
Bovinae	ANCESTRAL SPECIES	11	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00940000153339.b.b	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163.b
Bos	ANCESTRAL SPECIES	13	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00940000153339.b.b	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000174775	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908
Bos_b	ANCESTRAL SPECIES	11	ENSGT00940000160091	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000174775	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908
Hybrid Bos Indicus	MODERN SPECIES	1	SIX4 (ENSBIXG00005009512)	MNAT1 (ENSBIXG00005005464)	TRMT5 (ENSBIXG00005000500)	SLC38A6 (ENSBIXG00005009423)	ENSBIXG00005009388	ENSBIXG00005009380	TMEM30B (ENSBIXG00005009377)	PRKCH (ENSBIXG00005009360)	HIF1A (ENSBIXG00005006498)	SNAPC1 (ENSBIXG00005009224)	SYT16 (ENSBIXG00005000411)	ENSBIXG00005009162	KCNH5 (ENSBIXG00005009119)	RHOJ (ENSBIXG00005009084)	GPHB5 (ENSBIXG00005009065)	ENSBIXG00005009045 #22	PPP2R5E (ENSBIXG00005009017)	ENSBIXG00005008996	WDR89 (ENSBIXG00005005685)	SGPP1 (ENSBIXG00005008960)	SYNE2 (ENSBIXG00005008874)	ESR2 (ENSBIXG00005008657)	ENSBIXG00005008612	MTHFD1 (ENSBIXG00005008575)	AKAP5 (ENSBIXG00005008554)	ZBTB25 (ENSBIXG00005008539)	ZBTB1 (ENSBIXG00005008501)	PLEKHG3 (ENSBIXG00005008432)	SPTB (ENSBIXG00005008345)	CHURC1 (ENSBIXG00005008309)	GPX2 (ENSBIXG00005008290)
Cow	MODERN SPECIES	1	SIX6 (ENSBTAG00000013035)	SIX1 (ENSBTAG00000012139)	SIX4 (ENSBTAG00000049091)	MNAT1 (ENSBTAG00000030801)	TRMT5 (ENSBTAG00000011796)	SLC38A6 (ENSBTAG00000007931)	TMEM30B (ENSBTAG00000016713)	PRKCH (ENSBTAG00000003276)	HIF1A (ENSBTAG00000020935)	SNAPC1 (ENSBTAG00000020937)	SYT16 (ENSBTAG00000018947)	ENSBTAG00000030792	KCNH5 (ENSBTAG00000011379)	RHOJ (ENSBTAG00000017200)	GPHB5 (ENSBTAG00000049079)	ENSBTAG00000055159 #22	PPP2R5E (ENSBTAG00000019784)	WDR89 (ENSBTAG00000008815)	SGPP1 (ENSBTAG00000004430)	ENSBTAG00000051757	SYNE2 (ENSBTAG00000025450)	ESR2 (ENSBTAG00000004498)	ENSBTAG00000013836	MTHFD1 (ENSBTAG00000009641)	ZBTB25 (ENSBTAG00000009643)	AKAP5 (ENSBTAG00000009642)	ZBTB1 (ENSBTAG00000040551)	HSPA2 (ENSBTAG00000007807)	PPP1R36 (ENSBTAG00000007809)	PLEKHG3 (ENSBTAG00000001551)	SPTB (ENSBTAG00000004732)
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00940000153339.b.b	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000174775	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908
Wild yak	MODERN SPECIES	980														RHOJ (ENSBMUG00000013993)	GPHB5 (ENSBMUG00000013974)	ENSBMUG00000013962 #22	PPP2R5E (ENSBMUG00000013936)	WDR89 (ENSBMUG00000013913)
American bison	MODERN SPECIES	3156													ENSBBBG00000021955	RHOJ (ENSBBBG00000021964)	GPHB5 (ENSBBBG00000021968)	ENSBBBG00000022035 #22	PPP2R5E (ENSBBBG00000022085)	WDR89 (ENSBBBG00000022094)	SGPP1 (ENSBBBG00000022099)	SYNE2 (ENSBBBG00000005964)	ESR2 (ENSBBBG00000022747)	ENSBBBG00000022788	MTHFD1 (ENSBBBG00000022812)	AKAP5 (ENSBBBG00000022818)	ZBTB25 (ENSBBBG00000022827)	ZBTB1 (ENSBBBG00000022836)	HSPA2 (ENSBBBG00000022900)	PPP1R36 (ENSBBBG00000022919)	ENSBBBG00000022933	SPTB (ENSBBBG00000006063)	CHURC1 (ENSBBBG00000023144)
Caprinae	ANCESTRAL SPECIES	11	ENSGT00940000160091	ENSGT00940000156487	ENSGT00940000160820	ENSGT00390000002319	ENSGT00940000153304.B	ENSGT00940000156982	ENSGT00390000004660.C.a.b	ENSGT00940000158220	ENSGT00940000156774	ENSGT00390000018691	ENSGT00940000159673	ENSGT00530000063876.b	ENSGT00940000156540	ENSGT00940000159098	ENSGT00730000111179.b	ENSGT00950000183176.a.s.b #22	ENSGT01030000234620.a.b.a	ENSGT00390000006996	ENSGT00940000158836	ENSGT00940000154656	ENSGT00940000156116.C	ENSGT00390000012924.b	ENSGT00940000154746	ENSGT00390000019941	ENSGT00940000159887	ENSGT00940000157501	ENSGT00940000154813	ENSGT00390000012412	ENSGT00940000156521.b	ENSGT00940000158908	ENSGT00390000011163.b
Rambouillet Sheep	MODERN SPECIES	23	ENSOARG00020010525	TRMT5 (ENSOARG00020010606)	SLC38A6 (ENSOARG00020010682)	TMEM30B (ENSOARG00020010869)	PRKCH (ENSOARG00020010910)	HIF1A (ENSOARG00020011056)	SNAPC1 (ENSOARG00020011607)	ENSOARG00020011650	SYT16 (ENSOARG00020011691)	ENSOARG00020011822	ENSOARG00020011846	KCNH5 (ENSOARG00020011903)	ENSOARG00020012354	RHOJ (ENSOARG00020012405)	GPHB5 (ENSOARG00020012444)	ENSOARG00020012477 #22	PPP2R5E (ENSOARG00020012571)	ENSOARG00020012701	WDR89 (ENSOARG00020012765)	SGPP1 (ENSOARG00020012809)	ENSOARG00020012856	SYNE2 (ENSOARG00020013014)	ESR2 (ENSOARG00020014342)	ENSOARG00020014541	ENSOARG00020014576	ENSOARG00020014600	MTHFD1 (ENSOARG00020014712)	ZBTB25 (ENSOARG00020015169)	AKAP5 (ENSOARG00020015250)	ZBTB1 (ENSOARG00020015274)	HSPA2 (ENSOARG00020015317)
Goat	MODERN SPECIES	1	SIX4 (ENSCHIG00000012309)	ENSCHIG00000022102	MNAT1 (ENSCHIG00000021930)	TRMT5 (ENSCHIG00000018801)	SLC38A6 (ENSCHIG00000020159)	TMEM30B (ENSCHIG00000009225)	PRKCH (ENSCHIG00000016844)	ENSCHIG00000018951	HIF1A (ENSCHIG00000015613)	SNAPC1 (ENSCHIG00000011278)	SYT16 (ENSCHIG00000021144)	ENSCHIG00000006728	KCNH5 (ENSCHIG00000000501)	RHOJ (ENSCHIG00000016760)	GPHB5 (ENSCHIG00000025724)	ENSCHIG00000024045 #22	PPP2R5E (ENSCHIG00000025432)	WDR89 (ENSCHIG00000013306)	SGPP1 (ENSCHIG00000020626)	ENSCHIG00000022808	SYNE2 (ENSCHIG00000017393)	ESR2 (ENSCHIG00000011683)	ENSCHIG00000026739	MTHFD1 (ENSCHIG00000001482)	AKAP5 (ENSCHIG00000011249)	ENSCHIG00000023459	ZBTB1 (ENSCHIG00000020242)	HSPA2 (ENSCHIG00000010529)	PPP1R36 (ENSCHIG00000013318)	PLEKHG3 (ENSCHIG00000018176)	SPTB (ENSCHIG00000011171)
Pecora	ANCESTRAL SPECIES	9	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.t #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b.a #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.t #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.s.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Bovidae	ANCESTRAL SPECIES																	ENSGT00950000183176.a.t #22
Bovinae	ANCESTRAL SPECIES	23	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.t #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00940000155114.wb.a
Bos	ANCESTRAL SPECIES	24	ENSGT01100000263546.d.b.a.b.a.a #14	ENSGT01100000263546.d.b.a.b.b #14	ENSGT00390000016972.a.b.a.b.b.b	ENSGT01100000263546.d.b.a.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a.s.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183176.a.t #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562.a #27	ENSGT00390000000546 #29	ENSGT00940000154663.r.a #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000014165.c.a.b.b.b	ENSGT00940000157014.a #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00940000155114.wb.a
Bos_a	ANCESTRAL SPECIES																	ENSGT00950000183176.a.t #22
Domestic yak	MODERN SPECIES	3	ENSBGRG00000005450	ENSBGRG00000005469 #14	ENSBGRG00000005491 #14	ENSBGRG00000005545	ENSBGRG00000005555 #14	BPIFA3 (ENSBGRG00000005582) #16	BPIFA1 (ENSBGRG00000005622) #17	BPIFB1 (ENSBGRG00000005686) #18	ENSBGRG00000005792	CDK5RAP1 (ENSBGRG00000005894) #20	ENSBGRG00000006020	SNTA1 (ENSBGRG00000006075) #21	CBFA2T2 (ENSBGRG00000006122) #22	ENSBGRG00000006162	ENSBGRG00000006170	ENSBGRG00000006176 #22	NECAB3 (ENSBGRG00000006194) #23	C20orf144 (ENSBGRG00000006314) #24	ACTL10 (ENSBGRG00000006349) #25	E2F1 (ENSBGRG00000006368) #26	ENSBGRG00000006426 #27	ZNF341 (ENSBGRG00000006484) #29	ENSBGRG00000006672 #30	RALY (ENSBGRG00000006728) #32	ENSBGRG00000006852 #33	ENSBGRG00000006899	ASIP (ENSBGRG00000006937) #34	AHCY (ENSBGRG00000006978)	ENSBGRG00000007087	ENSBGRG00000007118 #36	DYNLRB1 (ENSBGRG00000007315) #37
Siberian musk deer	MODERN SPECIES	1198							ENSMMSG00000012944	ENSMMSG00000012907 #14	BPIFA3 (ENSMMSG00000012875) #16	BPIFA1 (ENSMMSG00000012839) #17	BPIFB1 (ENSMMSG00000012771) #18	ENSMMSG00000012706 #19	ENSMMSG00000012657	CDK5RAP1 (ENSMMSG00000012553) #20	SNTA1 (ENSMMSG00000012500) #21	CBFA2T2 (ENSMMSG00000012397) #22	ENSMMSG00000012366	ENSMMSG00000012346 #24	ACTL10 (ENSMMSG00000012331) #25	NECAB3 (ENSMMSG00000012299) #23	E2F1 (ENSMMSG00000012256) #26	PXMP4 (ENSMMSG00000012229) #27	ZNF341 (ENSMMSG00000012195) #29	CHMP4B (ENSMMSG00000012164) #30	RALY (ENSMMSG00000012103) #32	EIF2S2 (ENSMMSG00000012063) #33	ASIP (ENSMMSG00000012026) #34	AHCY (ENSMMSG00000011983)	ITCH (ENSMMSG00000011807) #36	DYNLRB1 (ENSMMSG00000011749) #37	MAP1LC3A (ENSMMSG00000011725)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183176.a #22
Hedgehog	MODERN SPECIES	8655																CBFA2T2 (ENSEEUG00000007911) #22
Common shrew	MODERN SPECIES	6609																CBFA2T2 (ENSSARG00000001355) #22
Euarchontoglires	ANCESTRAL SPECIES	17	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Tree shrew	MODERN SPECIES	3726																ENSTBEG00000015938 #22	ENSTBEG00000016109 #24	E2F1 (ENSTBEG00000016287) #26	ZNF341 (ENSTBEG00000016904) #29	CHMP4B (ENSTBEG00000017021) #30
Glires	ANCESTRAL SPECIES	17	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Lagomorpha	ANCESTRAL SPECIES	33	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00930000151259	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000167211	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00390000014941	ENSGT00730000111114	ENSGT00940000156917
Rabbit	MODERN SPECIES	15	ASXL1 (ENSOCUG00000035849)	NOL4L (ENSOCUG00000010835)	ENSOCUG00000014339	DNMT3B (ENSOCUG00000017835)	MAPRE1 (ENSOCUG00000024265) #7	ENSOCUG00000035490	SUN5 (ENSOCUG00000022223) #9	BPIFB2 (ENSOCUG00000027554) #10	BPIFB6 (ENSOCUG00000006815) #11	BPIFB3 (ENSOCUG00000014883) #12	ENSOCUG00000015717 #16	BPIFA1 (ENSOCUG00000007538) #17	ENSOCUG00000017051 #18	CDK5RAP1 (ENSOCUG00000017069) #20	SNTA1 (ENSOCUG00000011916) #21	CBFA2T2 (ENSOCUG00000000849) #22	ENSOCUG00000000854 #25	NECAB3 (ENSOCUG00000000850) #23	PXMP4 (ENSOCUG00000005415) #27	ZNF341 (ENSOCUG00000024028) #29	RALY (ENSOCUG00000000477) #32	EIF2S2 (ENSOCUG00000000481) #33	ENSOCUG00000038624	asip (ENSOCUG00000011138) #34	ENSOCUG00000036618	ENSOCUG00000008592	ITCH (ENSOCUG00000015354) #36	ENSOCUG00000021027 #37	PIGU (ENSOCUG00000009627)	ENSOCUG00000009634	NCOA6 (ENSOCUG00000009637)
Pika	MODERN SPECIES	4188																CBFA2T2 (ENSOPRG00000001392) #22	NECAB3 (ENSOPRG00000001421) #23	ENSOPRG00000001443 #24	E2F1 (ENSOPRG00000001479) #26	PXMP4 (ENSOPRG00000001496) #27
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Kangaroo rat	MODERN SPECIES	332	ENSDORG00000028887	Nol4l (ENSDORG00000027893)	Commd7 (ENSDORG00000002116)	ENSDORG00000012834	Mapre1 (ENSDORG00000023413) #7	Bpifb2 (ENSDORG00000004323) #10	Bpifb6 (ENSDORG00000004324) #11	Bpifb3 (ENSDORG00000029748) #12	Bpifb4 (ENSDORG00000001190) #13	Bpifa3 (ENSDORG00000002275) #16	ENSDORG00000002276 #17	Bpifb1 (ENSDORG00000002282) #18	Bpifb5 (ENSDORG00000028380) #19	Cdk5rap1 (ENSDORG00000004622) #20	Snta1 (ENSDORG00000029237) #21	Cbfa2t2 (ENSDORG00000001656) #22	Necab3 (ENSDORG00000013792) #23	E2f1 (ENSDORG00000013793) #26	Pxmp4 (ENSDORG00000030129) #27	Zfp341 (ENSDORG00000000005) #29	Chmp4b (ENSDORG00000011539) #30	Raly (ENSDORG00000013400) #32	Eif2s2 (ENSDORG00000001920) #33	a (ENSDORG00000013768) #34	ENSDORG00000012590	Itch (ENSDORG00000027257) #36	Dynlrb1 (ENSDORG00000028607) #37	ENSDORG00000029351	Pigu (ENSDORG00000001715)	Trp53inp2 (ENSDORG00000026160)	ENSDORG00000016245
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cricetidae	ANCESTRAL SPECIES	5	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804.y.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Chinese hamster chok1gshd	MODERN SPECIES	188	Bpifb2 (ENSCGRG00001009296) #10	Bpifb6 (ENSCGRG00001023599) #11	Bpifb3 (ENSCGRG00001020775) #12	Bpifb4 (ENSCGRG00001014345) #13	Bpifa6 (ENSCGRG00001023934)	Bpifa2 (ENSCGRG00001020519) #14	Bpifa3 (ENSCGRG00001017514) #16	Bpifa1 (ENSCGRG00001014265) #17	Bpifa5 (ENSCGRG00001018207) #17	Bpifb1 (ENSCGRG00001022649) #18	Bpifb5 (ENSCGRG00001022241) #19	ENSCGRG00001021876	ENSCGRG00001018519	Cdk5rap1 (ENSCGRG00001020687) #20	Snta1 (ENSCGRG00001016422) #21	Cbfa2t2 (ENSCGRG00001014529) #22	1700003F12Rik (ENSCGRG00001012971) #24	Actl10 (ENSCGRG00001006945) #25	Necab3 (ENSCGRG00001013760) #23	E2f1 (ENSCGRG00001001729) #26	Pxmp4 (ENSCGRG00001010342) #27	Zfp341 (ENSCGRG00001014101) #29	Chmp4b (ENSCGRG00001000652) #30	Raly (ENSCGRG00001014652) #32	ENSCGRG00001001614 #33	ENSCGRG00001004778	a (ENSCGRG00001021768) #34	ENSCGRG00001012673	Itch (ENSCGRG00001020207) #36	Dynlrb1 (ENSCGRG00001013277) #37	Map1lc3a (ENSCGRG00001005970)
Golden Hamster	MODERN SPECIES	791									Bpifa3 (ENSMAUG00000013387) #16	Bpifa1 (ENSMAUG00000014646) #17	Bpifa5 (ENSMAUG00000012713) #17	Bpifb1 (ENSMAUG00000011247) #18	Bpifb5 (ENSMAUG00000008139) #19	Cdk5rap1 (ENSMAUG00000000980) #20	Snta1 (ENSMAUG00000013984) #21	Cbfa2t2 (ENSMAUG00000001412) #22	1700003F12Rik (ENSMAUG00000022072) #24	Necab3 (ENSMAUG00000015672) #23	E2f1 (ENSMAUG00000000913) #26	Pxmp4 (ENSMAUG00000015504) #27	Zfp341 (ENSMAUG00000011481) #29	Chmp4b (ENSMAUG00000020158) #30	Raly (ENSMAUG00000005739) #32	ENSMAUG00000009771 #33	a (ENSMAUG00000021663) #34	ENSMAUG00000006591	Itch (ENSMAUG00000001009) #36	Dynlrb1 (ENSMAUG00000019405) #37	Pigu (ENSMAUG00000012275)	Trp53inp2 (ENSMAUG00000004915)	ENSMAUG00000020422
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Prairie vole	MODERN SPECIES	357	Tmem74b (ENSMOCG00000012931)	Rad21l (ENSMOCG00000001417)	Snph (ENSMOCG00000019255)	Sdcbp2 (ENSMOCG00000018189)	Fkbp1a (ENSMOCG00000015631)	Nsfl1c (ENSMOCG00000002492)	Bpifa6 (ENSMOCG00000013390)	Bpifa2 (ENSMOCG00000020017) #14	Bpifa3 (ENSMOCG00000007021) #16	Bpifa1 (ENSMOCG00000022067) #17	Bpifa5 (ENSMOCG00000015053) #17	Bpifb1 (ENSMOCG00000011657) #18	Bpifb5 (ENSMOCG00000002643) #19	Cdk5rap1 (ENSMOCG00000002846) #20	Snta1 (ENSMOCG00000005630) #21	Cbfa2t2 (ENSMOCG00000015541) #22	1700003F12Rik (ENSMOCG00000019597) #24	Necab3 (ENSMOCG00000000497) #23	E2f1 (ENSMOCG00000012464) #26	Pxmp4 (ENSMOCG00000003745) #27	Zfp341 (ENSMOCG00000004075) #29	Chmp4b (ENSMOCG00000022208) #30	ENSMOCG00000017228	Raly (ENSMOCG00000009450) #32	Eif2s2 (ENSMOCG00000012809) #33	a (ENSMOCG00000006735) #34	ENSMOCG00000021599	Itch (ENSMOCG00000015148) #36	Dynlrb1 (ENSMOCG00000001553) #37	Map1lc3a (ENSMOCG00000022232)	Pigu (ENSMOCG00000012991)
Northern American deer mouse	MODERN SPECIES	17	Bpifb3 (ENSPEMG00000016514) #12	Bpifb4 (ENSPEMG00000008153) #13	Bpifa6 (ENSPEMG00000016037)	Bpifa2 (ENSPEMG00000015949) #14	ENSPEMG00000027075	ENSPEMG00000028840	Bpifa3 (ENSPEMG00000008523) #16	Bpifa1 (ENSPEMG00000014511) #17	Bpifa5 (ENSPEMG00000011773) #17	Bpifb1 (ENSPEMG00000018971) #18	Bpifb5 (ENSPEMG00000007792) #19	ENSPEMG00000011960	Cdk5rap1 (ENSPEMG00000017045) #20	Snta1 (ENSPEMG00000003510) #21	ENSPEMG00000030394	Cbfa2t2 (ENSPEMG00000023470) #22	Necab3 (ENSPEMG00000011260) #23	1700003F12Rik (ENSPEMG00000031171) #24	Actl10 (ENSPEMG00000026578) #25	E2f1 (ENSPEMG00000018049) #26	Pxmp4 (ENSPEMG00000023523) #27	Zfp341 (ENSPEMG00000022506) #29	Chmp4b (ENSPEMG00000021658) #30	Raly (ENSPEMG00000021466) #32	Eif2s2 (ENSPEMG00000023172) #33	a (ENSPEMG00000023599) #34	ENSPEMG00000024071	Itch (ENSPEMG00000021623) #36	Dynlrb1 (ENSPEMG00000001641) #37	Map1lc3a (ENSPEMG00000001010)	Pigu (ENSPEMG00000001185)
Murinae	ANCESTRAL SPECIES	1	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Mus	ANCESTRAL SPECIES	1	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Mus_A	ANCESTRAL SPECIES		ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Mouse	MODERN SPECIES	11	Bpifb2 (ENSMUSG00000027481) #10	Bpifb6 (ENSMUSG00000068009) #11	Bpifb3 (ENSMUSG00000068008) #12	Bpifb4 (ENSMUSG00000074665) #13	Bpifa6 (ENSMUSG00000078998)	Bpifa2 (ENSMUSG00000042459) #14	Bpifa3 (ENSMUSG00000027482) #16	Bpifa1 (ENSMUSG00000027483) #17	Bpifa5 (ENSMUSG00000027484) #17	Bpifb1 (ENSMUSG00000027485) #18	Bpifb5 (ENSMUSG00000038572) #19	Bpifb9a (ENSMUSG00000067998)	Bpifb9b (ENSMUSG00000067996)	Cdk5rap1 (ENSMUSG00000027487) #20	Snta1 (ENSMUSG00000027488) #21	Cbfa2t2 (ENSMUSG00000038533) #22	Necab3 (ENSMUSG00000027489) #23	1700003F12Rik (ENSMUSG00000038523) #24	Actl10 (ENSMUSG00000078129) #25	E2f1 (ENSMUSG00000027490) #26	Pxmp4 (ENSMUSG00000000876) #27	Zfp341 (ENSMUSG00000059842) #29	Chmp4b (ENSMUSG00000038467) #30	Raly (ENSMUSG00000027593) #32	a (ENSMUSG00000027596) #34	Eif2s2 (ENSMUSG00000074656) #33	Ahcy (ENSMUSG00000027597)	Itch (ENSMUSG00000027598) #36	Dynlrb1 (ENSMUSG00000047459) #37	Map1lc3a (ENSMUSG00000027602)	Pigu (ENSMUSG00000038383)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01010000222653	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a.c #17	ENSGT01100000263546.d.b.a.a.a.a.d #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Steppe mouse	MODERN SPECIES	27													Cdk5rap1 (ENSMSIG00000001010) #20	Snta1 (ENSMSIG00000001125) #21	ENSMSIG00000001135	Cbfa2t2 (ENSMSIG00000001148) #22	Necab3 (ENSMSIG00000001205) #23	1700003F12Rik (ENSMSIG00000001368) #24	Actl10 (ENSMSIG00000001387) #25	E2f1 (ENSMSIG00000001395) #26	Pxmp4 (ENSMSIG00000001438) #27	ENSMSIG00000001473	Zfp341 (ENSMSIG00000001480) #29	Chmp4b (ENSMSIG00000001595) #30	ENSMSIG00000001612	Raly (ENSMSIG00000001654) #32	Eif2s2 (ENSMSIG00000001803) #33	a (ENSMSIG00000001870) #34	ENSMSIG00000001894	Itch (ENSMSIG00000001955) #36	Dynlrb1 (ENSMSIG00000002016) #37
spretus	MODERN SPECIES	11	Bpifb2 (MGP_SPRETEiJ_G0025416) #10	Bpifb6 (MGP_SPRETEiJ_G0025417) #11	Bpifb3 (MGP_SPRETEiJ_G0025418) #12	MGP_SPRETEiJ_G0025419 #13	Bpifa6 (MGP_SPRETEiJ_G0025420)	Bpifa2 (MGP_SPRETEiJ_G0025421) #14	Bpifa3 (MGP_SPRETEiJ_G0025422) #16	Bpifa1 (MGP_SPRETEiJ_G0025423) #17	Bpifa5 (MGP_SPRETEiJ_G0025424) #17	Bpifb1 (MGP_SPRETEiJ_G0025425) #18	Bpifb5 (MGP_SPRETEiJ_G0025426) #19	MGP_SPRETEiJ_G0025427	MGP_SPRETEiJ_G0025428	Cdk5rap1 (MGP_SPRETEiJ_G0025429) #20	Snta1 (MGP_SPRETEiJ_G0025430) #21	Cbfa2t2 (MGP_SPRETEiJ_G0025431) #22	Necab3 (MGP_SPRETEiJ_G0025432) #23	1700003F12Rik (MGP_SPRETEiJ_G0025433) #24	Actl10 (MGP_SPRETEiJ_G0025434) #25	E2f1 (MGP_SPRETEiJ_G0025435) #26	Pxmp4 (MGP_SPRETEiJ_G0025436) #27	MGP_SPRETEiJ_G0025437	MGP_SPRETEiJ_G0025438	Chmp4b (MGP_SPRETEiJ_G0025439) #30	MGP_SPRETEiJ_G0025440	Raly (MGP_SPRETEiJ_G0025441) #32	a (MGP_SPRETEiJ_G0025442) #34	Eif2s2 (MGP_SPRETEiJ_G0025443) #33	MGP_SPRETEiJ_G0025444	Itch (MGP_SPRETEiJ_G0025445) #36	Dynlrb1 (MGP_SPRETEiJ_G0025446) #37
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024493 #8	Sun5 (MGP_CAROLIEiJ_G0024494) #9	Bpifb2 (MGP_CAROLIEiJ_G0024495) #10	MGP_CAROLIEiJ_G0024496 #11	Bpifb3 (MGP_CAROLIEiJ_G0024497) #12	MGP_CAROLIEiJ_G0024498 #13	Bpifa6 (MGP_CAROLIEiJ_G0024499)	Bpifa2 (MGP_CAROLIEiJ_G0024500) #14	Bpifa3 (MGP_CAROLIEiJ_G0024501) #16	Bpifa1 (MGP_CAROLIEiJ_G0024502) #17	Bpifa5 (MGP_CAROLIEiJ_G0024503) #17	Bpifb1 (MGP_CAROLIEiJ_G0024504) #18	Bpifb5 (MGP_CAROLIEiJ_G0024505) #19	MGP_CAROLIEiJ_G0024507 #20	Snta1 (MGP_CAROLIEiJ_G0024508) #21	Cbfa2t2 (MGP_CAROLIEiJ_G0024509) #22	Necab3 (MGP_CAROLIEiJ_G0024510) #23	1700003F12Rik (MGP_CAROLIEiJ_G0024511) #24	Actl10 (MGP_CAROLIEiJ_G0024512) #25	E2f1 (MGP_CAROLIEiJ_G0024513) #26	Pxmp4 (MGP_CAROLIEiJ_G0024514) #27	MGP_CAROLIEiJ_G0024515	Zfp341 (MGP_CAROLIEiJ_G0024516) #29	Chmp4b (MGP_CAROLIEiJ_G0024517) #30	MGP_CAROLIEiJ_G0024518	Raly (MGP_CAROLIEiJ_G0024519) #32	a (MGP_CAROLIEiJ_G0024520) #34	Eif2s2 (MGP_CAROLIEiJ_G0024521) #33	MGP_CAROLIEiJ_G0024522	Itch (MGP_CAROLIEiJ_G0024523) #36	Dynlrb1 (MGP_CAROLIEiJ_G0024524) #37
Shrew mouse	MODERN SPECIES	16	Sun5 (MGP_PahariEiJ_G0025937) #9	Bpifb2 (MGP_PahariEiJ_G0025938) #10	Bpifb6 (MGP_PahariEiJ_G0025939) #11	Bpifb3 (MGP_PahariEiJ_G0025940) #12	MGP_PahariEiJ_G0025941 #13	Bpifa6 (MGP_PahariEiJ_G0025942)	MGP_PahariEiJ_G0025943 #14	MGP_PahariEiJ_G0025944	Bpifa3 (MGP_PahariEiJ_G0025945) #16	Bpifa1 (MGP_PahariEiJ_G0025946) #17	Bpifa5 (MGP_PahariEiJ_G0025947) #17	Bpifb1 (MGP_PahariEiJ_G0025948) #18	Bpifb5 (MGP_PahariEiJ_G0025949) #19	Cdk5rap1 (MGP_PahariEiJ_G0025951) #20	Snta1 (MGP_PahariEiJ_G0025952) #21	Cbfa2t2 (MGP_PahariEiJ_G0025953) #22	Necab3 (MGP_PahariEiJ_G0025954) #23	1700003F12Rik (MGP_PahariEiJ_G0025955) #24	Actl10 (MGP_PahariEiJ_G0025956) #25	E2f1 (MGP_PahariEiJ_G0025957) #26	Pxmp4 (MGP_PahariEiJ_G0025958) #27	MGP_PahariEiJ_G0025959	Zfp341 (MGP_PahariEiJ_G0025960) #29	Chmp4b (MGP_PahariEiJ_G0025961) #30	MGP_PahariEiJ_G0025962	Raly (MGP_PahariEiJ_G0025963) #32	a (MGP_PahariEiJ_G0025964) #34	Eif2s2 (MGP_PahariEiJ_G0025965) #33	MGP_PahariEiJ_G0025966	MGP_PahariEiJ_G0025967	Itch (MGP_PahariEiJ_G0025968) #36
Rat	MODERN SPECIES	13	Sun5 (ENSRNOG00000027221) #9	Bpifb2 (ENSRNOG00000012197) #10	Bpifb6 (ENSRNOG00000013371) #11	Bpifb3 (ENSRNOG00000034174) #13	Bpifa6 (ENSRNOG00000043258)	Bpifa2 (ENSRNOG00000013540) #14	Bpifa2f (ENSRNOG00000036870)	Bpifa3 (ENSRNOG00000013778) #16	Bpifa1 (ENSRNOG00000013859) #17	Bpifa5 (ENSRNOG00000013908) #17	Bpifb1 (ENSRNOG00000015468) #18	Bpifb5 (ENSRNOG00000025238) #19	LOC690507 (ENSRNOG00000015637)	ENSRNOG00000064935 #20	Snta1 (ENSRNOG00000016062) #21	Cbfa2t2 (ENSRNOG00000016352) #22	Sms-ps2 (ENSRNOG00000031275)	AABR07054362.1 (ENSRNOG00000050899)	E2f1 (ENSRNOG00000016708) #26	RGD1561517 (ENSRNOG00000016583) #24	Actl10 (ENSRNOG00000036864) #25	Pxmp4 (ENSRNOG00000016975) #27	Zfp341 (ENSRNOG00000017086) #29	ENSRNOG00000063087	AABR07054368.1 (ENSRNOG00000029996)	Chmp4b (ENSRNOG00000046585) #30	LOC690597 (ENSRNOG00000055182)	Raly (ENSRNOG00000017405) #32	Eif2s2 (ENSRNOG00000017447) #33	Asip (ENSRNOG00000017701) #34	Ahcy (ENSRNOG00000017777)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1717																Cbfa2t2 (ENSNGAG00000006999) #22	Necab3 (ENSNGAG00000016266) #23	E2f1 (ENSNGAG00000012431) #26	Pxmp4 (ENSNGAG00000005193) #27	Zfp341 (ENSNGAG00000009722) #29	Chmp4b (ENSNGAG00000011108) #30	Raly (ENSNGAG00000001263) #32	Eif2s2 (ENSNGAG00000004708) #33
Lesser Egyptian jerboa	MODERN SPECIES	149	ENSJJAG00000021569	ENSJJAG00000000449	Commd7 (ENSJJAG00000010654)	ENSJJAG00000000621	Mapre1 (ENSJJAG00000018249) #7	Sun5 (ENSJJAG00000021388) #9	Bpifb2 (ENSJJAG00000017859) #10	ENSJJAG00000019744 #11	Bpifb4 (ENSJJAG00000019678) #13	Bpifa3 (ENSJJAG00000012935) #16	ENSJJAG00000022519 #17	Bpifb1 (ENSJJAG00000023259) #18	Bpifb5 (ENSJJAG00000016027) #19	ENSJJAG00000016210	Snta1 (ENSJJAG00000020267) #21	Cbfa2t2 (ENSJJAG00000012293) #22	Necab3 (ENSJJAG00000020960) #23	1700003F12Rik (ENSJJAG00000010475) #24	E2f1 (ENSJJAG00000022378) #26	Pxmp4 (ENSJJAG00000016829) #27	Zfp341 (ENSJJAG00000020905) #29	Chmp4b (ENSJJAG00000013547) #30	Raly (ENSJJAG00000008473) #32	Eif2s2 (ENSJJAG00000014081) #33	ENSJJAG00000001144	a (ENSJJAG00000018926) #34	ENSJJAG00000022935	Itch (ENSJJAG00000000211) #36	ENSJJAG00000005483 #37	Map1lc3a (ENSJJAG00000010977)	Pigu (ENSJJAG00000021314)
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Guinea pig	MODERN SPECIES	45											ENSCPOG00000013128 #16	BPIFA1 (ENSCPOG00000014220) #17	BPIFB1 (ENSCPOG00000005568) #18	CDK5RAP1 (ENSCPOG00000006663) #20	SNTA1 (ENSCPOG00000005179) #21	CBFA2T2 (ENSCPOG00000001721) #22	NECAB3 (ENSCPOG00000020859) #23	ENSCPOG00000022109 #25	E2F1 (ENSCPOG00000001800) #26	PXMP4 (ENSCPOG00000024804) #27	ZNF341 (ENSCPOG00000003820) #29	CHMP4B (ENSCPOG00000035794) #30	RALY (ENSCPOG00000000309) #32	EIF2S2 (ENSCPOG00000040226) #33	ASIP (ENSCPOG00000005139) #34	AHCY (ENSCPOG00000014740)	ITCH (ENSCPOG00000013787) #36	DYNLRB1 (ENSCPOG00000013798) #37	PIGU (ENSCPOG00000013806)	MAP1LC3A (ENSCPOG00000030093)	TP53INP2 (ENSCPOG00000030059)
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.i.a #7	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Long-tailed chinchilla	MODERN SPECIES	129	ASXL1 (ENSCLAG00000017264)	NOL4L (ENSCLAG00000017265)	COMMD7 (ENSCLAG00000017227)	DNMT3B (ENSCLAG00000017043)	ENSCLAG00000017109 #7	SUN5 (ENSCLAG00000017254) #9	BPIFB2 (ENSCLAG00000017195) #10	BPIFB6 (ENSCLAG00000016956) #11	BPIFB3 (ENSCLAG00000016914) #12	BPIFB4 (ENSCLAG00000016722) #13	BPIFA3 (ENSCLAG00000016843) #16	BPIFA1 (ENSCLAG00000017206) #17	BPIFB1 (ENSCLAG00000016830) #18	CDK5RAP1 (ENSCLAG00000015460) #20	SNTA1 (ENSCLAG00000015283) #21	CBFA2T2 (ENSCLAG00000017277) #22	ENSCLAG00000017072 #24	ACTL10 (ENSCLAG00000018112) #25	NECAB3 (ENSCLAG00000017054) #23	E2F1 (ENSCLAG00000017077) #26	PXMP4 (ENSCLAG00000017245) #27	ZNF341 (ENSCLAG00000016902) #29	CHMP4B (ENSCLAG00000017205) #30	RALY (ENSCLAG00000016899) #32	ENSCLAG00000017263 #33	ASIP (ENSCLAG00000017188) #34	AHCY (ENSCLAG00000017278)	ITCH (ENSCLAG00000016997) #36	DYNLRB1 (ENSCLAG00000016878) #37	MAP1LC3A (ENSCLAG00000016760)	PIGU (ENSCLAG00000016489)
Degu	MODERN SPECIES	78	ENSODEG00000012036 #7	SUN5 (ENSODEG00000012284) #9	BPIFB2 (ENSODEG00000012498) #10	BPIFB6 (ENSODEG00000011706) #11	BPIFB3 (ENSODEG00000012502) #12	BPIFB4 (ENSODEG00000013037) #13	ENSODEG00000012670 ##35	ENSODEG00000012886	ENSODEG00000013174	BPIFA3 (ENSODEG00000011797) #16	BPIFA1 (ENSODEG00000011803) #17	BPIFB1 (ENSODEG00000012392) #18	CDK5RAP1 (ENSODEG00000013190) #20	SNTA1 (ENSODEG00000012817) #21	ENSODEG00000019960	CBFA2T2 (ENSODEG00000012562) #22	ENSODEG00000013862	NECAB3 (ENSODEG00000012739) #23	ENSODEG00000013210 #24	E2F1 (ENSODEG00000012327) #26	PXMP4 (ENSODEG00000015173) #27	ZNF341 (ENSODEG00000013884) #29	ENSODEG00000012366 #30	ENSODEG00000012831 #32	ENSODEG00000012151 #33	ENSODEG00000012943	ENSODEG00000015189	ENSODEG00000020169	ASIP (ENSODEG00000013289) #34	AHCY (ENSODEG00000013391)	ENSODEG00000013834
Naked mole-rat female	MODERN SPECIES	6											ENSHGLG00000039669	CDK5RAP1 (ENSHGLG00000005146) #20	SNTA1 (ENSHGLG00000006583) #21	ENSHGLG00000018147	ENSHGLG00000047164	CBFA2T2 (ENSHGLG00000018266) #22	ENSHGLG00000009659 #23	E2F1 (ENSHGLG00000009301) #26	ENSHGLG00000041428	PXMP4 (ENSHGLG00000016991) #27	ZNF341 (ENSHGLG00000013786) #29	ENSHGLG00000041357 #30	ENSHGLG00000032344	ENSHGLG00000042490	RALY (ENSHGLG00000017779) #32	ENSHGLG00000031940 #34	AHCY (ENSHGLG00000009751)	ITCH (ENSHGLG00000005001) #36	ENSHGLG00000010397 #37	MAP1LC3A (ENSHGLG00000009257)	ENSHGLG00000008565
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000156928	ENSGT00490000043329.a.a.a.l #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000156928	ENSGT00490000043329.a.a.a.l #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Marmotini_b	ANCESTRAL SPECIES	29											ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A.o.b #37	ENSGT00940000158853	ENSGT00390000014941
Arctic ground squirrel	MODERN SPECIES	24											ENSUPAG00010005007 #18	ENSUPAG00010004998 #19	ENSUPAG00010004995	CDK5RAP1 (ENSUPAG00010004922) #20	SNTA1 (ENSUPAG00010004904) #21	CBFA2T2 (ENSUPAG00010004884) #22	C20orf144 (ENSUPAG00010004879) #24	ACTL10 (ENSUPAG00010004872) #25	NECAB3 (ENSUPAG00010004839) #23	E2F1 (ENSUPAG00010004824) #26	PXMP4 (ENSUPAG00010004822) #27	ZNF341 (ENSUPAG00010004795) #29	CHMP4B (ENSUPAG00010004793) #30	RALY (ENSUPAG00010004731) #32	EIF2S2 (ENSUPAG00010004723) #33	ASIP (ENSUPAG00010004712) #34	AHCY (ENSUPAG00010004706)	ITCH (ENSUPAG00010004671) #36	DYNLRB1 (ENSUPAG00010004657) #37	MAP1LC3A (ENSUPAG00010004647)	PIGU (ENSUPAG00010004614)
Squirrel	MODERN SPECIES	161														CDK5RAP1 (ENSSTOG00000005492) #20	SNTA1 (ENSSTOG00000020522) #21	CBFA2T2 (ENSSTOG00000003478) #22	ACTL10 (ENSSTOG00000000902) #25	NECAB3 (ENSSTOG00000028643) #23	E2F1 (ENSSTOG00000002735) #26	PXMP4 (ENSSTOG00000002748) #27	ZNF341 (ENSSTOG00000002753) #29	CHMP4B (ENSSTOG00000005242) #30	RALY (ENSSTOG00000008810) #32	EIF2S2 (ENSSTOG00000008821) #33	ASIP (ENSSTOG00000003501) #34	AHCY (ENSSTOG00000003013)	ITCH (ENSSTOG00000014804) #36	ENSSTOG00000014820 #37	MAP1LC3A (ENSSTOG00000006158)	PIGU (ENSSTOG00000014830)	TP53INP2 (ENSSTOG00000014835)
Alpin marmot	MODERN SPECIES		ENSMMMG00000023683 #7	EFCAB8 (ENSMMMG00000023682) #8	SUN5 (ENSMMMG00000023678) #9	BPIFB2 (ENSMMMG00000023676) #10	BPIFB6 (ENSMMMG00000023672) #11	BPIFB3 (ENSMMMG00000023666) #12	BPIFB4 (ENSMMMG00000023664) #13	ENSMMMG00000023662	ENSMMMG00000023661	BPIFA3 (ENSMMMG00000023655) #16	BPIFA1 (ENSMMMG00000023653) #17	BPIFB1 (ENSMMMG00000023647) #18	ENSMMMG00000023646 #19	CDK5RAP1 (ENSMMMG00000023644) #20	SNTA1 (ENSMMMG00000023469) #21	CBFA2T2 (ENSMMMG00000023462) #22	ACTL10 (ENSMMMG00000023461) #25	NECAB3 (ENSMMMG00000023457) #23	E2F1 (ENSMMMG00000023454) #26	PXMP4 (ENSMMMG00000023451) #27	ZNF341 (ENSMMMG00000023444) #29	CHMP4B (ENSMMMG00000023441) #30	RALY (ENSMMMG00000023423) #32	EIF2S2 (ENSMMMG00000023422) #33	ASIP (ENSMMMG00000023418) #34	AHCY (ENSMMMG00000023416)	ENSMMMG00000023413	ITCH (ENSMMMG00000023404) #36	DYNLRB1 (ENSMMMG00000023395) #37	PIGU (ENSMMMG00000023384)	NCOA6 (ENSMMMG00000023374)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	STOML1 (ENSSVLG00005015186)	PML (ENSSVLG00005015325)	ISLR2 (ENSSVLG00005015492)	ISLR (ENSSVLG00005015502)	STRA6 (ENSSVLG00005015566)	CCDC33 (ENSSVLG00005016264)	CYP11A1 (ENSSVLG00005016426)	SEMA7A (ENSSVLG00005016591)	UBL7 (ENSSVLG00005016929)	ARID3B (ENSSVLG00005016981)	ENSSVLG00005017093	CLK3 (ENSSVLG00005017141)	ENSSVLG00005017169	EXOC1 (ENSSVLG00005017188)	CYP1A1 (ENSSVLG00005017319)	ENSSVLG00005017497 #22	CYP1A2 (ENSSVLG00005017562)	CSK (ENSSVLG00005017636)	CPLX3 (ENSSVLG00005018221)	ULK3 (ENSSVLG00005018262)	SCAMP2 (ENSSVLG00005018318)	MPI (ENSSVLG00005018379)	FAM219B (ENSSVLG00005018600)	ENSSVLG00005018668	RPP25 (ENSSVLG00005018756)	SCAMP5 (ENSSVLG00005018788)	PPCDC (ENSSVLG00005018891)	C15orf39 (ENSSVLG00005019039)	ENSSVLG00005019078	COMMD4 (ENSSVLG00005019452)	NEIL1 (ENSSVLG00005019603)
Eurasian red squirrel	MODERN SPECIES	11	COMMD7 (ENSSVLG00005002025)	ENSSVLG00005002127	ENSSVLG00005002322 #7	ENSSVLG00005002338	SUN5 (ENSSVLG00005002374) #9	BPIFB2 (ENSSVLG00005002451) #10	BPIFB6 (ENSSVLG00005002490) #11	BPIFB3 (ENSSVLG00005002532) #12	BPIFB4 (ENSSVLG00005002569) #13	BPIFA3 (ENSSVLG00005002605) #16	BPIFA1 (ENSSVLG00005002640) #17	BPIFB1 (ENSSVLG00005002680) #18	ENSSVLG00005002725	CDK5RAP1 (ENSSVLG00005002783) #20	SNTA1 (ENSSVLG00005002824) #21	CBFA2T2 (ENSSVLG00005002847) #22	ENSSVLG00005002886	NECAB3 (ENSSVLG00005002907) #23	ENSSVLG00005002949 #24	ACTL10 (ENSSVLG00005002962) #25	E2F1 (ENSSVLG00005002971) #26	PXMP4 (ENSSVLG00005002986) #27	ZNF341 (ENSSVLG00005003010) #29	ENSSVLG00005003036	CHMP4B (ENSSVLG00005003046) #30	ENSSVLG00005003066 #32	EIF2S2 (ENSSVLG00005003099) #33	ENSSVLG00005003129	ENSSVLG00005003145	ENSSVLG00005003157	ASIP (ENSSVLG00005003171) #34
Primates	ANCESTRAL SPECIES	17	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.b ##19	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Strepsirrhini	ANCESTRAL SPECIES	12	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Lemuriformes	ANCESTRAL SPECIES	10	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	9	NOL4L (ENSMICG00000006651)	COMMD7 (ENSMICG00000006672)	DNMT3B (ENSMICG00000006679)	MAPRE1 (ENSMICG00000047719) #7	EFCAB8 (ENSMICG00000036641) #8	SUN5 (ENSMICG00000001971) #9	BPIFB2 (ENSMICG00000001979) #10	BPIFB6 (ENSMICG00000001984) #11	BPIFB3 (ENSMICG00000001990) #12	BPIFB4 (ENSMICG00000026403) #13	BPIFA2 (ENSMICG00000013403) #14	BPIFA1 (ENSMICG00000004348) #17	BPIFB1 (ENSMICG00000004357) #18	CDK5RAP1 (ENSMICG00000004382) #20	SNTA1 (ENSMICG00000004936) #21	ENSMICG00000006895 #22	NECAB3 (ENSMICG00000006906) #23	E2F1 (ENSMICG00000006921) #26	ENSMICG00000028174 #27	ZNF341 (ENSMICG00000047832) #29	ENSMICG00000042802 #30	RALY (ENSMICG00000039074) #32	ENSMICG00000006944 #33	ASIP (ENSMICG00000044506) #34	AHCY (ENSMICG00000003232)	ENSMICG00000032740	ENSMICG00000034345	ITCH (ENSMICG00000003238) #36	DYNLRB1 (ENSMICG00000003253) #37	MAP1LC3A (ENSMICG00000028466)	PIGU (ENSMICG00000003257)
Mouse lemur	MODERN SPECIES	4	OLFM4 (ENSMICG00000001798)	ENSMICG00000028372	PCDH17 (ENSMICG00000008032)	DIAPH3 (ENSMICG00000011388)	ENSMICG00000043260	TDRD3 (ENSMICG00000009982)	PCDH20 (ENSMICG00000032560)	ENSMICG00000038136	ENSMICG00000045460	PCDH9 (ENSMICG00000002338)	ENSMICG00000026328	KLHL1 (ENSMICG00000005245)	ENSMICG00000046198	DACH1 (ENSMICG00000031012)	ENSMICG00000037073	ENSMICG00000042445 #22	BORA (ENSMICG00000008756)	DIS3 (ENSMICG00000004703)	PIBF1 (ENSMICG00000011928)	KLF5 (ENSMICG00000014481)	KLF12 (ENSMICG00000005731)	TBC1D4 (ENSMICG00000006748)	COMMD6 (ENSMICG00000014323)	UCHL3 (ENSMICG00000014333)	LMO7 (ENSMICG00000014340)	KCTD12 (ENSMICG00000002666)	ACOD1 (ENSMICG00000027082)	CLN5 (ENSMICG00000036480)	FBXL3 (ENSMICG00000002671)	MYCBP2 (ENSMICG00000002673)	SCEL (ENSMICG00000002703)
Lemuriformes_a	ANCESTRAL SPECIES	26	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Coquerels sifaka	MODERN SPECIES	126	ENSPCOG00000021565	DNMT3B (ENSPCOG00000025216)	ENSPCOG00000011905	MAPRE1 (ENSPCOG00000011361) #7	EFCAB8 (ENSPCOG00000003137) #8	SUN5 (ENSPCOG00000021842) #9	BPIFB2 (ENSPCOG00000024187) #10	BPIFB6 (ENSPCOG00000019939) #11	BPIFB3 (ENSPCOG00000002263) #12	BPIFB4 (ENSPCOG00000014355) #13	BPIFA2 (ENSPCOG00000020981) #14	BPIFA1 (ENSPCOG00000015572) #17	BPIFB1 (ENSPCOG00000028115) #18	CDK5RAP1 (ENSPCOG00000024202) #20	SNTA1 (ENSPCOG00000027507) #21	CBFA2T2 (ENSPCOG00000018468) #22	ENSPCOG00000016999 #24	NECAB3 (ENSPCOG00000028089) #23	E2F1 (ENSPCOG00000020987) #26	PXMP4 (ENSPCOG00000024717) #27	ZNF341 (ENSPCOG00000023267) #29	CHMP4B (ENSPCOG00000019410) #30	RALY (ENSPCOG00000016363) #32	EIF2S2 (ENSPCOG00000023384) #33	ENSPCOG00000016432	ENSPCOG00000016748	ASIP (ENSPCOG00000010026) #34	AHCY (ENSPCOG00000028404)	ENSPCOG00000023647	ITCH (ENSPCOG00000009922) #36	ENSPCOG00000014374 #37
Greater bamboo lemur	MODERN SPECIES	98														ENSPSMG00000017928 #20	SNTA1 (ENSPSMG00000017942) #21	CBFA2T2 (ENSPSMG00000017990) #22	NECAB3 (ENSPSMG00000018052) #23	ENSPSMG00000018069 #24	ACTL10 (ENSPSMG00000018073) #25	E2F1 (ENSPSMG00000018083) #26	PXMP4 (ENSPSMG00000018104) #27	ZNF341 (ENSPSMG00000018155) #29	CHMP4B (ENSPSMG00000018182) #30	RALY (ENSPSMG00000018249) #32	EIF2S2 (ENSPSMG00000018322) #33	ASIP (ENSPSMG00000018334) #34	AHCY (ENSPSMG00000018371)	ITCH (ENSPSMG00000018448) #36	ENSPSMG00000018498 #37	MAP1LC3A (ENSPSMG00000018505)	PIGU (ENSPSMG00000018561)
Bushbaby	MODERN SPECIES	140	ENSOGAG00000026557 #7	SUN5 (ENSOGAG00000015660) #9	BPIFB2 (ENSOGAG00000015664) #10	BPIFB6 (ENSOGAG00000015669) #11	BPIFB3 (ENSOGAG00000015673) #12	BPIFB4 (ENSOGAG00000010737) #13	ENSOGAG00000027213	BPIFA2 (ENSOGAG00000010742) #14	BPIFA1 (ENSOGAG00000010750) #17	BPIFB1 (ENSOGAG00000010753) #18	ENSOGAG00000024646 #19	ENSOGAG00000010760	CDK5RAP1 (ENSOGAG00000010764) #20	SNTA1 (ENSOGAG00000027133) #21	ENSOGAG00000032821	CBFA2T2 (ENSOGAG00000015051) #22	NECAB3 (ENSOGAG00000028758) #23	ACTL10 (ENSOGAG00000010438) #25	E2F1 (ENSOGAG00000024304) #26	PXMP4 (ENSOGAG00000010440) #27	ZNF341 (ENSOGAG00000010441) #29	CHMP4B (ENSOGAG00000010444) #30	ENSOGAG00000013532	RALY (ENSOGAG00000032337) #32	ENSOGAG00000001417 #33	AHCY (ENSOGAG00000016787)	ITCH (ENSOGAG00000016792) #36	ENSOGAG00000016802 #37	MAP1LC3A (ENSOGAG00000027682)	PIGU (ENSOGAG00000003518)	TP53INP2 (ENSOGAG00000006332)
Haplorrhini	ANCESTRAL SPECIES	13	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Simiiformes	ANCESTRAL SPECIES	18	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Catarrhini	ANCESTRAL SPECIES	19	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00940000157014 #36
Hominoidea	ANCESTRAL SPECIES	17	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.c.a #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00940000157014 #36
Hominidae	ANCESTRAL SPECIES	18	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.c.a #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00940000157014 #36
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	16	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.c.a #33	ENSGT00940000154258.a #34	ENSGT00940000163568	ENSGT00940000157014 #36	ENSGT00390000011067.A #37
Homo/Pan group	ANCESTRAL SPECIES	17	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.c.a #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000163568	ENSGT00940000157014 #36	ENSGT00390000011067.A #37
Pan	ANCESTRAL SPECIES	15	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00950000183030.m.a.a.b.a.b.a.b	ENSGT00940000154663.u #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.d #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000163568	ENSGT00940000157014 #36	ENSGT00390000011067.A #37
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	787																ENSPTRG00000049130 #22	ENSPTRG00000048154 #23	ENSPTRG00000046446 #24	ENSPTRG00000044260 #25	ENSPTRG00000048160 #26	ENSPTRG00000049551 #27
Chimpanzee	MODERN SPECIES	11	DNMT3B (ENSPTRG00000013384)	MAPRE1 (ENSPTRG00000013385) #7	EFCAB8 (ENSPTRG00000034012) #8	SUN5 (ENSPTRG00000024395) #9	BPIFB2 (ENSPTRG00000013387) #10	BPIFB6 (ENSPTRG00000013388) #11	BPIFB3 (ENSPTRG00000022778) #12	BPIFB4 (ENSPTRG00000013390) #13	BPIFA2 (ENSPTRG00000013391) #14	ENSPTRG00000049909	BPIFA3 (ENSPTRG00000013393) #16	BPIFA1 (ENSPTRG00000013395) #17	BPIFB1 (ENSPTRG00000013396) #18	CDK5RAP1 (ENSPTRG00000013399) #20	SNTA1 (ENSPTRG00000013400) #21	CBFA2T2 (ENSPTRG00000013401) #22	NECAB3 (ENSPTRG00000013402) #23	C20H20orf144 (ENSPTRG00000013403) #24	ENSPTRG00000047541 #25	E2F1 (ENSPTRG00000013404) #26	PXMP4 (ENSPTRG00000013405) #27	ZNF341 (ENSPTRG00000013406) #29	ENSPTRG00000045113	CHMP4B (ENSPTRG00000013408) #30	RALY (ENSPTRG00000013410) #32	EIF2S2 (ENSPTRG00000013412) #33	ENSPTRG00000045368	ENSPTRG00000046065	ASIP (ENSPTRG00000013413) #34	AHCY (ENSPTRG00000013414)	ITCH (ENSPTRG00000013415) #36
Bonobo	MODERN SPECIES	11	DNMT3B (ENSPPAG00000034470)	MAPRE1 (ENSPPAG00000025593) #7	EFCAB8 (ENSPPAG00000043457) #8	SUN5 (ENSPPAG00000029851) #9	BPIFB2 (ENSPPAG00000041501) #10	BPIFB6 (ENSPPAG00000019659) #11	BPIFB3 (ENSPPAG00000036747) #12	BPIFB4 (ENSPPAG00000042697) #13	BPIFA2 (ENSPPAG00000038731) #14	ENSPPAG00000041776	BPIFA3 (ENSPPAG00000011914) #16	BPIFA1 (ENSPPAG00000034693) #17	BPIFB1 (ENSPPAG00000029535) #18	CDK5RAP1 (ENSPPAG00000008989) #20	SNTA1 (ENSPPAG00000029137) #21	CBFA2T2 (ENSPPAG00000042396) #22	NECAB3 (ENSPPAG00000039394) #23	C20orf144 (ENSPPAG00000042847) #24	ACTL10 (ENSPPAG00000026624) #25	E2F1 (ENSPPAG00000025868) #26	PXMP4 (ENSPPAG00000028570) #27	ZNF341 (ENSPPAG00000037384) #29	ENSPPAG00000037596	CHMP4B (ENSPPAG00000028496) #30	RALY (ENSPPAG00000034951) #32	ENSPPAG00000043449 #33	ENSPPAG00000041611	ENSPPAG00000041601	ENSPPAG00000043799	ASIP (ENSPPAG00000031015) #34	AHCY (ENSPPAG00000037325)
Human	MODERN SPECIES	12	COMMD7 (ENSG00000149600)	DNMT3B (ENSG00000088305)	MAPRE1 (ENSG00000101367) #7	EFCAB8 (ENSG00000215529) #8	SUN5 (ENSG00000167098) #9	BPIFB2 (ENSG00000078898) #10	BPIFB6 (ENSG00000167104) #11	BPIFB3 (ENSG00000186190) #12	BPIFB4 (ENSG00000186191) #13	BPIFA2 (ENSG00000131050) #14	BPIFA3 (ENSG00000131059) #16	BPIFA1 (ENSG00000198183) #17	BPIFB1 (ENSG00000125999) #18	CDK5RAP1 (ENSG00000101391) #20	SNTA1 (ENSG00000101400) #21	CBFA2T2 (ENSG00000078699) #22	NECAB3 (ENSG00000125967) #23	C20orf144 (ENSG00000149609) #24	ACTL10 (ENSG00000288649) #25	E2F1 (ENSG00000101412) #26	PXMP4 (ENSG00000101417) #27	ZNF341 (ENSG00000131061) #29	CHMP4B (ENSG00000101421) #30	RALY (ENSG00000125970) #32	EIF2S2 (ENSG00000125977) #33	ASIP (ENSG00000101440) #34	AHCY (ENSG00000101444)	ITCH (ENSG00000078747) #36	DYNLRB1 (ENSG00000125971) #37	MAP1LC3A (ENSG00000101460)	PIGU (ENSG00000101464)
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	22	SHOC1 (ENSGGOG00000000911)	ENSGGOG00000010664	DNAJC25 (ENSGGOG00000012395)	PTGR1 (ENSGGOG00000013334)	ZNF483 (ENSGGOG00000011455)	ECPAS (ENSGGOG00000012416)	OR2K2 (ENSGGOG00000005175)	LPAR1 (ENSGGOG00000001749)	MUSK (ENSGGOG00000015657)	SVEP1 (ENSGGOG00000004135)	ENSGGOG00000027079	TXN (ENSGGOG00000006925)	C9orf152 (ENSGGOG00000013066)	PALM2-AKAP2 (ENSGGOG00000010137)	ENSGGOG00000026428	ENSGGOG00000040506 #22	ENSGGOG00000040883	ENSGGOG00000023840	PTPN3 (ENSGGOG00000024081)	EPB41L4B (ENSGGOG00000004192)	FRRS1L (ENSGGOG00000009128)	TMEM245 (ENSGGOG00000001950)	CTNNAL1 (ENSGGOG00000004228)	ABITRAM (ENSGGOG00000004222)	ELP1 (ENSGGOG00000004204)	ACTL7A (ENSGGOG00000025495)	ACTL7B (ENSGGOG00000008278)	KLF4 (ENSGGOG00000000096)	RAD23B (ENSGGOG00000002511)	ENSGGOG00000042705	ZNF462 (ENSGGOG00000008882)
Gorilla	MODERN SPECIES	11	DNMT3B (ENSGGOG00000009533)	ENSGGOG00000022496 #7	EFCAB8 (ENSGGOG00000000152) #8	SUN5 (ENSGGOG00000008288) #9	BPIFB2 (ENSGGOG00000010625) #10	BPIFB6 (ENSGGOG00000010638) #11	BPIFB3 (ENSGGOG00000010657) #12	BPIFB4 (ENSGGOG00000011742) #13	BPIFA2 (ENSGGOG00000017162) #14	ENSGGOG00000017163	BPIFA3 (ENSGGOG00000023198) #16	BPIFA1 (ENSGGOG00000027809) #17	BPIFB1 (ENSGGOG00000003242) #18	ENSGGOG00000003253 #20	SNTA1 (ENSGGOG00000008508) #21	ENSGGOG00000003578 #22	ENSGGOG00000043692	NECAB3 (ENSGGOG00000003584) #23	C20orf144 (ENSGGOG00000038124) #24	ACTL10 (ENSGGOG00000042107) #25	E2F1 (ENSGGOG00000003588) #26	PXMP4 (ENSGGOG00000044115) #27	ZNF341 (ENSGGOG00000015775) #29	ENSGGOG00000025590	CHMP4B (ENSGGOG00000007775) #30	RALY (ENSGGOG00000022709) #32	ENSGGOG00000015546 #33	ENSGGOG00000027170	ASIP (ENSGGOG00000026572) #34	ENSGGOG00000040622	AHCY (ENSGGOG00000014694)
Orangutan	MODERN SPECIES	11	DNMT3B (ENSPPYG00000010911)	MAPRE1 (ENSPPYG00000032390) #7	ENSPPYG00000035142	EFCAB8 (ENSPPYG00000032398) #8	SUN5 (ENSPPYG00000010914) #9	BPIFB2 (ENSPPYG00000011278) #10	BPIFB6 (ENSPPYG00000011279) #11	BPIFB3 (ENSPPYG00000011280) #12	ENSPPYG00000011281 #13	BPIFA2 (ENSPPYG00000010915) #14	BPIFA3 (ENSPPYG00000010917) #16	BPIFA1 (ENSPPYG00000010918) #17	BPIFB1 (ENSPPYG00000010919) #18	CDK5RAP1 (ENSPPYG00000010923) #20	SNTA1 (ENSPPYG00000010924) #21	CBFA2T2 (ENSPPYG00000010925) #22	NECAB3 (ENSPPYG00000010926) #23	C20orf144 (ENSPPYG00000010927) #24	ACTL10 (ENSPPYG00000010928) #25	E2F1 (ENSPPYG00000010929) #26	PXMP4 (ENSPPYG00000041080) #27	ZNF341 (ENSPPYG00000010930) #29	CHMP4B (ENSPPYG00000010931) #30	ENSPPYG00000041388	ENSPPYG00000010932 #32	EIF2S2 (ENSPPYG00000010933) #33	ENSPPYG00000010934 #34	AHCY (ENSPPYG00000010935)	ITCH (ENSPPYG00000010936) #36	ENSPPYG00000010937 #37	ENSPPYG00000010938
Gibbon	MODERN SPECIES	3	ENSNLEG00000033204	DNMT3B (ENSNLEG00000009819)	MAPRE1 (ENSNLEG00000009828) #7	SUN5 (ENSNLEG00000009839) #9	BPIFB2 (ENSNLEG00000009854) #10	BPIFB6 (ENSNLEG00000009863) #11	BPIFB3 (ENSNLEG00000009874) #12	BPIFB4 (ENSNLEG00000009889) #13	BPIFA2 (ENSNLEG00000009895) #14	ENSNLEG00000032607	BPIFA3 (ENSNLEG00000009907) #16	ENSNLEG00000009915 #17	BPIFB1 (ENSNLEG00000009918) #18	CDK5RAP1 (ENSNLEG00000009942) #20	SNTA1 (ENSNLEG00000009970) #21	CBFA2T2 (ENSNLEG00000009976) #22	C20orf144 (ENSNLEG00000010006) #24	ENSNLEG00000009989 #23	E2F1 (ENSNLEG00000010009) #26	ENSNLEG00000029978 #27	ZNF341 (ENSNLEG00000010013) #29	CHMP4B (ENSNLEG00000010020) #30	ENSNLEG00000035552	ENSNLEG00000010031 #32	EIF2S2 (ENSNLEG00000010034) #33	ENSNLEG00000028939	ENSNLEG00000010041	ENSNLEG00000030506	ITCH (ENSNLEG00000010045) #36	ENSNLEG00000010082 #37	MAP1LC3A (ENSNLEG00000010086)
Cercopithecidae	ANCESTRAL SPECIES	16	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00940000157014 #36
Cercopithecinae	ANCESTRAL SPECIES	19	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000153675.a.a.b.e.a.g.b	ENSGT00940000157014 #36
Cercopithecinae_a	ANCESTRAL SPECIES	18	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.a #33	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a
Cercopithecinae_b	ANCESTRAL SPECIES	12	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #34
Cercopithecinae_d	ANCESTRAL SPECIES	2	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a	ENSGT00940000154258.a #34
Drill	MODERN SPECIES	1448														CDK5RAP1 (ENSMLEG00000029036) #20	SNTA1 (ENSMLEG00000040271) #21	CBFA2T2 (ENSMLEG00000042497) #22	ENSMLEG00000010723	NECAB3 (ENSMLEG00000041816) #23	C20orf144 (ENSMLEG00000044204) #24	ACTL10 (ENSMLEG00000008960) #25	E2F1 (ENSMLEG00000004422) #26	PXMP4 (ENSMLEG00000032170) #27	ZNF341 (ENSMLEG00000031946) #29	CHMP4B (ENSMLEG00000033156) #30	ENSMLEG00000000187	RALY (ENSMLEG00000028900) #32	ENSMLEG00000004937	EIF2S2 (ENSMLEG00000039854) #33	ENSMLEG00000033651
Sooty mangabey	MODERN SPECIES	602	MAPRE1 (ENSCATG00000041722) #7	EFCAB8 (ENSCATG00000043154) #8	ENSCATG00000038780	SUN5 (ENSCATG00000030423) #9	BPIFB2 (ENSCATG00000035818) #10	BPIFB6 (ENSCATG00000032216) #11	BPIFB3 (ENSCATG00000043728) #12	BPIFB4 (ENSCATG00000008536) #13	BPIFA2 (ENSCATG00000042233) #14	ENSCATG00000029740	BPIFA3 (ENSCATG00000041213) #16	BPIFA1 (ENSCATG00000042760) #17	BPIFB1 (ENSCATG00000026260) #18	CDK5RAP1 (ENSCATG00000039579) #20	SNTA1 (ENSCATG00000044322) #21	CBFA2T2 (ENSCATG00000006176) #22	ENSCATG00000022295	NECAB3 (ENSCATG00000034703) #23	C20orf144 (ENSCATG00000044672) #24	ACTL10 (ENSCATG00000022465) #25	E2F1 (ENSCATG00000039419) #26	PXMP4 (ENSCATG00000044653) #27	ZNF341 (ENSCATG00000011236) #29	CHMP4B (ENSCATG00000044221) #30	ENSCATG00000032333	RALY (ENSCATG00000031769) #32	ENSCATG00000022568	ENSCATG00000044082 #33	ENSCATG00000044570	ENSCATG00000039901	ASIP (ENSCATG00000031477) #34
Olive baboon	MODERN SPECIES	7	C20orf203 (ENSPANG00000050681)	COMMD7 (ENSPANG00000001132)	DNMT3B (ENSPANG00000013451)	MAPRE1 (ENSPANG00000016611) #7	EFCAB8 (ENSPANG00000023852) #8	ENSPANG00000024494 #9	BPIFB2 (ENSPANG00000019996) #10	BPIFB6 (ENSPANG00000009734) #11	BPIFB3 (ENSPANG00000020552) #12	BPIFB4 (ENSPANG00000022709) #13	BPIFA2 (ENSPANG00000024266) #14	BPIFA3 (ENSPANG00000021778) #16	BPIFA1 (ENSPANG00000024267) #17	BPIFB1 (ENSPANG00000017512) #18	CDK5RAP1 (ENSPANG00000025545) #20	CBFA2T2 (ENSPANG00000022710) #22	NECAB3 (ENSPANG00000025546) #23	C20orf144 (ENSPANG00000017513) #24	ACTL10 (ENSPANG00000004544) #25	E2F1 (ENSPANG00000006985) #26	PXMP4 (ENSPANG00000016747) #27	ZNF341 (ENSPANG00000018096) #29	CHMP4B (ENSPANG00000018095) #30	ENSPANG00000018093 #32	ENSPANG00000048492 #33	ASIP (ENSPANG00000022711) #34	AHCY (ENSPANG00000026274)	ITCH (ENSPANG00000009940) #36	DYNLRB1 (ENSPANG00000009941) #37	MAP1LC3A (ENSPANG00000014240)	NCOA6 (ENSPANG00000017422)
Macaca	ANCESTRAL SPECIES	16	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.b ##19	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.a #33	ENSGT00910000147823	ENSGT00390000001804.cb.b.a.b #33	ENSGT00940000153095.g.b.a.b.o	ENSGT00390000007890.c.a
Pig-tailed macaque	MODERN SPECIES	232	MAPRE1 (ENSMNEG00000039307) #7	EFCAB8 (ENSMNEG00000035540) #8	ENSMNEG00000036815	SUN5 (ENSMNEG00000033611) #9	BPIFB2 (ENSMNEG00000029774) #10	BPIFB6 (ENSMNEG00000035018) #11	BPIFB3 (ENSMNEG00000038601) #12	BPIFB4 (ENSMNEG00000043965) #13	BPIFA2 (ENSMNEG00000042823) #14	ENSMNEG00000028931 ##19	BPIFA3 (ENSMNEG00000005575) #16	BPIFA1 (ENSMNEG00000044088) #17	BPIFB1 (ENSMNEG00000043489) #18	CDK5RAP1 (ENSMNEG00000045565) #20	SNTA1 (ENSMNEG00000038405) #21	CBFA2T2 (ENSMNEG00000034428) #22	NECAB3 (ENSMNEG00000040091) #23	C20orf144 (ENSMNEG00000045111) #24	ACTL10 (ENSMNEG00000026090) #25	E2F1 (ENSMNEG00000027050) #26	PXMP4 (ENSMNEG00000010793) #27	ZNF341 (ENSMNEG00000034107) #29	CHMP4B (ENSMNEG00000032657) #30	ENSMNEG00000039504	RALY (ENSMNEG00000044988) #32	ENSMNEG00000018000	EIF2S2 (ENSMNEG00000029852) #33	ENSMNEG00000044539	ENSMNEG00000029730	ASIP (ENSMNEG00000040686) #34	ENSMNEG00000030944
Macaca_a	ANCESTRAL SPECIES	18	ENSGT00390000018318.u.b.a.a.n.b	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT01100000263546.d.b.a.a.b ##19	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00940000161627.a.a.a.a.b.a.a.a.a.b.b.b.b.b	ENSGT01100000263493.a.a.a.b.a.a.b.a.b.a.a.b.a.a.b.b.a.a.a.b.a.a.b.a	ENSGT00950000183176.a #22	ENSGT00910000147530	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000159472 #26	ENSGT01100000263539.b.b.b.a.a.a.b	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.a #33	ENSGT00940000153095.g.b.a.b.o	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37
Crab-eating macaque	MODERN SPECIES	1	EFCAB8 (ENSMFAG00000006242) #8	SUN5 (ENSMFAG00000035909) #9	BPIFB2 (ENSMFAG00000040564) #10	BPIFB6 (ENSMFAG00000036761) #11	BPIFB3 (ENSMFAG00000042929) #12	BPIFB4 (ENSMFAG00000030797) #13	BPIFA2 (ENSMFAG00000032051) #14	BPIFA3 (ENSMFAG00000002677) #16	BPIFA1 (ENSMFAG00000041209) #17	BPIFB1 (ENSMFAG00000036542) #18	CDK5RAP1 (ENSMFAG00000040526) #20	SNTA1 (ENSMFAG00000039231) #21	ENSMFAG00000053042	ENSMFAG00000047567	ENSMFAG00000051247	CBFA2T2 (ENSMFAG00000000820) #22	ENSMFAG00000050553	NECAB3 (ENSMFAG00000035873) #23	C20orf144 (ENSMFAG00000038184) #24	E2F1 (ENSMFAG00000042416) #26	ENSMFAG00000047376	ENSMFAG00000039376 #27	ENSMFAG00000045920 #29	CHMP4B (ENSMFAG00000040050) #30	ENSMFAG00000051093	ENSMFAG00000050321	RALY (ENSMFAG00000033131) #32	EIF2S2 (ENSMFAG00000037155) #33	AHCY (ENSMFAG00000031669)	ITCH (ENSMFAG00000041734) #36	ENSMFAG00000055213
Rhesus	MODERN SPECIES	1	EFCAB8 (ENSMMUG00000037750) #8	ENSMMUG00000046729	SUN5 (ENSMMUG00000009414) #9	BPIFB2 (ENSMMUG00000053133) #10	BPIFB6 (ENSMMUG00000020669) #11	BPIFB3 (ENSMMUG00000020671) #12	BPIFB4 (ENSMMUG00000020676) #13	BPIFA2 (ENSMMUG00000059440) #14	BPIFA4 (ENSMMUG00000042013) ##19	BPIFA3 (ENSMMUG00000008928) #16	BPIFA1 (ENSMMUG00000008925) #17	BPIFB1 (ENSMMUG00000062078) #18	CDK5RAP1 (ENSMMUG00000008470) #20	ENSMMUG00000050166	ENSMMUG00000055776	CBFA2T2 (ENSMMUG00000023541) #22	ENSMMUG00000063982	ENSMMUG00000052335	NECAB3 (ENSMMUG00000023543) #23	C10H20orf144 (ENSMMUG00000023548) #24	E2F1 (ENSMMUG00000023550) #26	ENSMMUG00000064963	PXMP4 (ENSMMUG00000023551) #27	ZNF341 (ENSMMUG00000021492) #29	CHMP4B (ENSMMUG00000008084) #30	RALY (ENSMMUG00000018093) #32	EIF2S2 (ENSMMUG00000018095) #33	ENSMMUG00000056046	ASIP (ENSMMUG00000061171) #34	AHCY (ENSMMUG00000016306)	ITCH (ENSMMUG00000012912) #36
Vervet Monkey	MODERN SPECIES	11	COMMD7 (ENSCSAG00000012589)	DNMT3B (ENSCSAG00000012573)	MAPRE1 (ENSCSAG00000012529) #7	ENSCSAG00000012522	SUN5 (ENSCSAG00000012504) #9	BPIFB2 (ENSCSAG00000012461) #10	BPIFB6 (ENSCSAG00000012441) #11	BPIFB3 (ENSCSAG00000012411) #12	BPIFB4 (ENSCSAG00000012383) #13	BPIFA2 (ENSCSAG00000012361) #14	BPIFA3 (ENSCSAG00000012337) #16	BPIFA1 (ENSCSAG00000012315) #17	BPIFB1 (ENSCSAG00000012293) #18	CDK5RAP1 (ENSCSAG00000012289) #20	SNTA1 (ENSCSAG00000012284) #21	CBFA2T2 (ENSCSAG00000012281) #22	NECAB3 (ENSCSAG00000012279) #23	C20orf144 (ENSCSAG00000012277) #24	ACTL10 (ENSCSAG00000018668) #25	E2F1 (ENSCSAG00000012265) #26	PXMP4 (ENSCSAG00000012247) #27	ZNF341 (ENSCSAG00000012235) #29	CHMP4B (ENSCSAG00000012213) #30	RALY (ENSCSAG00000012199) #32	EIF2S2 (ENSCSAG00000012138) #33	ASIP (ENSCSAG00000012125) #34	AHCY (ENSCSAG00000012115)	ITCH (ENSCSAG00000012102) #36	DYNLRB1 (ENSCSAG00000012088) #37	MAP1LC3A (ENSCSAG00000012080)	PIGU (ENSCSAG00000012058)
Rhinopithecus	ANCESTRAL SPECIES	28	ENSGT00940000156928.a	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.u #30	ENSGT00390000013771.v	ENSGT00940000157601 #32	ENSGT00390000001804.cb.b.a.b.d #33	ENSGT00390000001804.cb.b.b #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Black snub-nosed monkey	MODERN SPECIES	75	ENSRBIG00000027967	SLC23A2 (ENSRBIG00000027789)	RASSF2 (ENSRBIG00000013928)	PRND (ENSRBIG00000033646)	PRNP (ENSRBIG00000003130)	ENSRBIG00000027395	ADRA1D (ENSRBIG00000028900)	ENSRBIG00000032026	SMOX (ENSRBIG00000036982)	ENSRBIG00000033843	RNF24 (ENSRBIG00000021788)	PANK2 (ENSRBIG00000028866)	MAVS (ENSRBIG00000033881)	AP5S1 (ENSRBIG00000032481)	CDC25B (ENSRBIG00000034530)	CBFA2T2 (ENSRBIG00000043649) #22	NECAB3 (ENSRBIG00000026105) #23	C20orf144 (ENSRBIG00000034520) #24	ACTL10 (ENSRBIG00000030364) #25	E2F1 (ENSRBIG00000033055) #26	PXMP4 (ENSRBIG00000028626) #27	ZNF341 (ENSRBIG00000034139) #29	CHMP4B (ENSRBIG00000043046) #30	ENSRBIG00000033900	RALY (ENSRBIG00000030203) #32	ENSRBIG00000042624 #33	ASIP (ENSRBIG00000039743) #34	ENSRBIG00000032079	ENSRBIG00000034932	AHCY (ENSRBIG00000027979)	ITCH (ENSRBIG00000035908) #36
Golden snub-nosed monkey	MODERN SPECIES	896				SUN5 (ENSRROG00000043627) #9	BPIFB2 (ENSRROG00000041108) #10	BPIFB6 (ENSRROG00000030178) #11	BPIFB3 (ENSRROG00000040199) #12	BPIFB4 (ENSRROG00000043803) #13	BPIFA2 (ENSRROG00000038035) #14	ENSRROG00000045498	BPIFA3 (ENSRROG00000041448) #16	BPIFA1 (ENSRROG00000029579) #17	BPIFB1 (ENSRROG00000034793) #18	CDK5RAP1 (ENSRROG00000037532) #20	SNTA1 (ENSRROG00000042592) #21	CBFA2T2 (ENSRROG00000035361) #22	C20orf144 (ENSRROG00000044990) #24	ACTL10 (ENSRROG00000009546) #25	NECAB3 (ENSRROG00000010016) #23	E2F1 (ENSRROG00000039358) #26	PXMP4 (ENSRROG00000033853) #27	ZNF341 (ENSRROG00000032773) #29	CHMP4B (ENSRROG00000029883) #30	ENSRROG00000039774
Platyrrhini	ANCESTRAL SPECIES	11	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.a #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.dc.b	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cebidae	ANCESTRAL SPECIES	13	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.a.c #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.dc.b	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cebidae_a	ANCESTRAL SPECIES	2	ENSGT00940000156928	ENSGT00490000043329.a.a.a #7	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804.cb.a.c #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.dc.b	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00930000150941.x.a.b.a
Capuchin	MODERN SPECIES	18	EFCAB8 (ENSCCAG00000022910) #8	SUN5 (ENSCCAG00000034764) #9	BPIFB2 (ENSCCAG00000030652) #10	BPIFB6 (ENSCCAG00000030049) #11	BPIFB3 (ENSCCAG00000022192) #12	BPIFB4 (ENSCCAG00000027553) #13	BPIFA2 (ENSCCAG00000021755) #14	ENSCCAG00000034919 ##19	BPIFA3 (ENSCCAG00000022344) #16	BPIFA1 (ENSCCAG00000021907) #17	BPIFB1 (ENSCCAG00000015758) #18	CDK5RAP1 (ENSCCAG00000031228) #20	SNTA1 (ENSCCAG00000037245) #21	ENSCCAG00000023290	ENSCCAG00000020608	CBFA2T2 (ENSCCAG00000030202) #22	C20orf144 (ENSCCAG00000001393) #24	ACTL10 (ENSCCAG00000020021) #25	NECAB3 (ENSCCAG00000025337) #23	E2F1 (ENSCCAG00000031862) #26	PXMP4 (ENSCCAG00000023929) #27	ZNF341 (ENSCCAG00000022663) #29	CHMP4B (ENSCCAG00000035412) #30	RALY (ENSCCAG00000024548) #32	ENSCCAG00000035446 #33	ASIP (ENSCCAG00000034213) #34	ENSCCAG00000036415	ITCH (ENSCCAG00000036090) #36	ENSCCAG00000026601 #37	MAP1LC3A (ENSCCAG00000026883)	ENSCCAG00000018006
Bolivian squirrel monkey	MODERN SPECIES	89	DNMT3B (ENSSBOG00000030711)	MAPRE1 (ENSSBOG00000026959) #7	EFCAB8 (ENSSBOG00000035195) #8	SUN5 (ENSSBOG00000036230) #9	BPIFB2 (ENSSBOG00000023467) #10	BPIFB6 (ENSSBOG00000015194) #11	BPIFB3 (ENSSBOG00000035285) #12	BPIFB4 (ENSSBOG00000034867) #13	BPIFA2 (ENSSBOG00000031635) #14	ENSSBOG00000035555	BPIFA3 (ENSSBOG00000031059) #16	BPIFA1 (ENSSBOG00000033533) #17	BPIFB1 (ENSSBOG00000023508) #18	CDK5RAP1 (ENSSBOG00000034885) #20	SNTA1 (ENSSBOG00000020201) #21	CBFA2T2 (ENSSBOG00000029834) #22	C20orf144 (ENSSBOG00000026299) #24	ACTL10 (ENSSBOG00000004671) #25	NECAB3 (ENSSBOG00000036045) #23	E2F1 (ENSSBOG00000028962) #26	PXMP4 (ENSSBOG00000005223) #27	ZNF341 (ENSSBOG00000026329) #29	CHMP4B (ENSSBOG00000030524) #30	RALY (ENSSBOG00000001418) #32	ENSSBOG00000020845 #33	ENSSBOG00000035159	AHCY (ENSSBOG00000018930)	ITCH (ENSSBOG00000028570) #36	ENSSBOG00000034562	MAP1LC3A (ENSSBOG00000027529)	ENSSBOG00000036011
Marmoset	MODERN SPECIES	17	ENSCJAG00000015601 #7	EFCAB8 (ENSCJAG00000083357) #8	SUN5 (ENSCJAG00000018611) #9	BPIFB2 (ENSCJAG00000018598) #10	BPIFB6 (ENSCJAG00000018589) #11	BPIFB3 (ENSCJAG00000018580) #12	BPIFB4 (ENSCJAG00000034914) #13	BPIFA2 (ENSCJAG00000018544) #14	BPIFA3 (ENSCJAG00000018565) #16	BPIFA1 (ENSCJAG00000018547) #17	BPIFB1 (ENSCJAG00000018531) #18	ENSCJAG00000074490	CDK5RAP1 (ENSCJAG00000018500) #20	SNTA1 (ENSCJAG00000046751) #21	ENSCJAG00000071493	CBFA2T2 (ENSCJAG00000018475) #22	ACTL10 (ENSCJAG00000058257) #25	NECAB3 (ENSCJAG00000018455) #23	E2F1 (ENSCJAG00000018451) #26	PXMP4 (ENSCJAG00000080526) #27	ZNF341 (ENSCJAG00000018423) #29	CHMP4B (ENSCJAG00000018397) #30	ENSCJAG00000018361 #32	ENSCJAG00000018334 #33	ASIP (ENSCJAG00000018327) #34	AHCY (ENSCJAG00000018303)	ENSCJAG00000084324	ENSCJAG00000047561	ITCH (ENSCJAG00000018204) #36	ENSCJAG00000079373 #37	MAP1LC3A (ENSCJAG00000045544)
Mas night monkey	MODERN SPECIES	1017	MAPRE1 (ENSANAG00000035566) #7	EFCAB8 (ENSANAG00000029449) #8	SUN5 (ENSANAG00000026404) #9	BPIFB2 (ENSANAG00000023925) #10	BPIFB6 (ENSANAG00000034061) #11	BPIFB3 (ENSANAG00000005106) #12	BPIFB4 (ENSANAG00000021575) #13	BPIFA2 (ENSANAG00000020124) #14	ENSANAG00000026946	BPIFA3 (ENSANAG00000029660) #16	BPIFA1 (ENSANAG00000023955) #17	BPIFB1 (ENSANAG00000024111) #18	CDK5RAP1 (ENSANAG00000036607) #20	SNTA1 (ENSANAG00000021276) #21	ENSANAG00000022327	CBFA2T2 (ENSANAG00000029831) #22	NECAB3 (ENSANAG00000024109) #23	C20orf144 (ENSANAG00000028577) #24	E2F1 (ENSANAG00000029428) #26	PXMP4 (ENSANAG00000031512) #27	ZNF341 (ENSANAG00000023240) #29	CHMP4B (ENSANAG00000023014) #30	RALY (ENSANAG00000019376) #32	ENSANAG00000022839 #33	ASIP (ENSANAG00000030668) #34	ENSANAG00000033573	ENSANAG00000014301 #31	ITCH (ENSANAG00000027856) #36	ENSANAG00000023825 #37	MAP1LC3A (ENSANAG00000022249)	PIGU (ENSANAG00000035852)
Tarsier	MODERN SPECIES	5322															EPHB1 (ENSTSYG00000000897)	ENSTSYG00000031041 #22
Atlantogenata	ANCESTRAL SPECIES	6	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Xenarthra	ANCESTRAL SPECIES	316													ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33
Armadillo	MODERN SPECIES	1934												ENSDNOG00000039006	CDK5RAP1 (ENSDNOG00000015236) #20	ENSDNOG00000043650	SNTA1 (ENSDNOG00000040663) #21	CBFA2T2 (ENSDNOG00000007950) #22	NECAB3 (ENSDNOG00000039751) #23	ENSDNOG00000007969 #24	ACTL10 (ENSDNOG00000032070) #25	E2F1 (ENSDNOG00000046733) #26	PXMP4 (ENSDNOG00000007975) #27	ZNF341 (ENSDNOG00000034368) #29	CHMP4B (ENSDNOG00000032154) #30	ENSDNOG00000038139	ENSDNOG00000003227 #32	EIF2S2 (ENSDNOG00000047014) #33	ENSDNOG00000048473
Sloth	MODERN SPECIES	7934																CBFA2T2 (ENSCHOG00000006523) #22
Afrotheria	ANCESTRAL SPECIES	3	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Tenrec	MODERN SPECIES	8012																CBFA2T2 (ENSETEG00000018942) #22
Afrotheria_a	ANCESTRAL SPECIES	3	ENSGT00940000163617 #8	ENSGT00940000155225 #9	ENSGT01100000263546.e.a.a.b #10	ENSGT01100000263546.e.b #11	ENSGT01100000263546.e.a.b #12	ENSGT01100000263546.e.a.a.a.b #13	ENSGT01100000263546.d.b.a.b #14	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #16	ENSGT01100000263546.d.b.a.a.a.a #17	ENSGT01100000263546.d.b.b #18	ENSGT01100000263546.e.a.a.a.a #19	ENSGT00940000164301	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Hyrax	MODERN SPECIES	7471																CBFA2T2 (ENSPCAG00000015597) #22	NECAB3 (ENSPCAG00000015675) #23	ENSPCAG00000015768 #24	ACTL10 (ENSPCAG00000015815) #25	E2F1 (ENSPCAG00000015826) #26	PXMP4 (ENSPCAG00000015896) #27
Elephant	MODERN SPECIES	180	ENSLAFG00000020535	ENSLAFG00000032038 #8	SUN5 (ENSLAFG00000021496) #9	BPIFB2 (ENSLAFG00000008987) #10	BPIFB6 (ENSLAFG00000028326) #11	BPIFB3 (ENSLAFG00000018176) #12	BPIFB4 (ENSLAFG00000002061) #13	ENSLAFG00000000105 #14	ENSLAFG00000003615 #16	BPIFA1 (ENSLAFG00000010265) #17	BPIFB1 (ENSLAFG00000010267) #18	ENSLAFG00000028139 #19	ENSLAFG00000014548	CDK5RAP1 (ENSLAFG00000001172) #20	SNTA1 (ENSLAFG00000027816) #21	CBFA2T2 (ENSLAFG00000018088) #22	NECAB3 (ENSLAFG00000018096) #23	ENSLAFG00000018104 #24	ACTL10 (ENSLAFG00000018108) #25	E2F1 (ENSLAFG00000018114) #26	PXMP4 (ENSLAFG00000004616) #27	ZNF341 (ENSLAFG00000007128) #29	CHMP4B (ENSLAFG00000022958) #30	RALY (ENSLAFG00000000321) #32	EIF2S2 (ENSLAFG00000016639) #33	ASIP (ENSLAFG00000005229) #34	ENSLAFG00000028026	ITCH (ENSLAFG00000011603) #36	DYNLRB1 (ENSLAFG00000029820) #37	MAP1LC3A (ENSLAFG00000027645)	PIGU (ENSLAFG00000017870)
Marsupialia	ANCESTRAL SPECIES	9	ENSGT00940000158327	ENSGT00420000029848.A	ENSGT00940000159358	ENSGT00940000157465.a	ENSGT00940000158554	ENSGT00390000002781	ENSGT00940000156526.a	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000159708	ENSGT00940000155448	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #24	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000155266.x	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.g	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Opossum	MODERN SPECIES		ENSMODG00000003922	FLT4 (ENSMODG00000003918)	ENSMODG00000003904	TBC1D9B (ENSMODG00000003882)	SQSTM1 (ENSMODG00000003806)	MGAT4B (ENSMODG00000003778)	LTC4S (ENSMODG00000003733)	MAML1 (ENSMODG00000003725)	ENSMODG00000003708	ENSMODG00000003673	L3MBTL1 (ENSMODG00000003647)	SRSF6 (ENSMODG00000003107)	ENSMODG00000023076	TOX2 (ENSMODG00000003070)	SNTA1 (ENSMODG00000003050) #21	CBFA2T2 (ENSMODG00000003023) #22	NECAB3 (ENSMODG00000002977) #23	ENSMODG00000002993 #24	ENSMODG00000002988 #25	E2F1 (ENSMODG00000002875) #26	PXMP4 (ENSMODG00000002864) #27	ZNF341 (ENSMODG00000002856) #29	CHMP4B (ENSMODG00000002830) #30	ENSMODG00000002836	RALY (ENSMODG00000002819) #32	EIF2S2 (ENSMODG00000002805) #33	ENSMODG00000002765	ASIP (ENSMODG00000002762) #34	AHCY (ENSMODG00000002753)	ITCH (ENSMODG00000002732) #36	DYNLRB1 (ENSMODG00000002702) #37
Marsupialia_b	ANCESTRAL SPECIES	5	ENSGT00940000158327	ENSGT00420000029848.A	ENSGT00940000159358	ENSGT00940000157465.a	ENSGT00940000158554	ENSGT00390000002781	ENSGT00940000156526.a	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000159708	ENSGT00940000155448	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000155266.x	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.g	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Diprotodontia	ANCESTRAL SPECIES	4	ENSGT00940000158327	ENSGT00420000029848.A	ENSGT00940000159358	ENSGT00940000157465.a	ENSGT00940000158554	ENSGT00390000002781	ENSGT00940000156526.a	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000159708	ENSGT00940000155448	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000155266.x	ENSGT00940000157601.x.a #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.g	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Diprotodontia_a	ANCESTRAL SPECIES	5	ENSGT00940000158327	ENSGT00420000029848.A	ENSGT00940000159358	ENSGT00940000157465.a	ENSGT00940000158554	ENSGT00390000002781	ENSGT00940000156526.a	ENSGT00940000160738	ENSGT00950000183201.b.b.b.a	ENSGT00950000182915.a.a.a	ENSGT00940000153137.a.b.a	ENSGT00940000159708	ENSGT00940000155448	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000155266.x	ENSGT00940000154663 #30	ENSGT00940000157601.x.b #32	ENSGT00940000157601.x.a #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a.g	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853
Common wonbat	MODERN SPECIES	1023	RASGEF1C (ENSVURG00010019833)	CNOT6 (ENSVURG00010019814)	GFPT2 (ENSVURG00010019801)	MAPK9 (ENSVURG00010019784)	ENSVURG00010019769	FLT4 (ENSVURG00010019743)	RNF130 (ENSVURG00010019705)	TBC1D9B (ENSVURG00010019683)	SQSTM1 (ENSVURG00010019670)	MAML1 (ENSVURG00010019659)	CANX (ENSVURG00010019632)	L3MBTL1 (ENSVURG00010019617)	SRSF6 (ENSVURG00010019601)	TOX2 (ENSVURG00010019590)	SNTA1 (ENSVURG00010019377) #21	CBFA2T2 (ENSVURG00010019347) #22	ACTL10 (ENSVURG00010019341) #25	NECAB3 (ENSVURG00010019324) #23	E2F1 (ENSVURG00010019304) #26	PXMP4 (ENSVURG00010019297) #27	ZNF341 (ENSVURG00010019277) #29	ENSVURG00010019269	CHMP4B (ENSVURG00010019263) #30	ENSVURG00010019251 #32	EIF2S2 (ENSVURG00010019246) #33	ASIP (ENSVURG00010019239) #34	AHCY (ENSVURG00010019234)	ITCH (ENSVURG00010019217) #36	DYNLRB1 (ENSVURG00010019208) #37	MAP1LC3A (ENSVURG00010019204)	PIGU (ENSVURG00010019190)
koala	MODERN SPECIES	74	MAPK9 (ENSPCIG00000004062)	ENSPCIG00000004056	FLT4 (ENSPCIG00000004027)	ENSPCIG00000003992	TBC1D9B (ENSPCIG00000003952)	SQSTM1 (ENSPCIG00000003936)	MGAT4B (ENSPCIG00000003915)	ENSPCIG00000003908	MAML1 (ENSPCIG00000003902)	CANX (ENSPCIG00000003888)	ENSPCIG00000033556	L3MBTL1 (ENSPCIG00000003824)	SRSF6 (ENSPCIG00000003820)	TOX2 (ENSPCIG00000005825)	SNTA1 (ENSPCIG00000005829) #21	ENSPCIG00000005830 #22	ENSPCIG00000005833 #25	NECAB3 (ENSPCIG00000005831) #23	E2F1 (ENSPCIG00000005835) #26	PXMP4 (ENSPCIG00000005843) #27	ZNF341 (ENSPCIG00000005844) #29	ENSPCIG00000005849	CHMP4B (ENSPCIG00000005848) #30	ENSPCIG00000011153 #32	EIF2S2 (ENSPCIG00000011155) #33	ASIP (ENSPCIG00000028159) #34	ENSPCIG00000028158	ENSPCIG00000028157	ITCH (ENSPCIG00000028155) #36	DYNLRB1 (ENSPCIG00000028154) #37	ENSPCIG00000028153
Wallaby	MODERN SPECIES	306																CBFA2T2 (ENSMEUG00000010889) #22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000004019	MAPK9 (ENSSHAG00000005542)	ENSSHAG00000006299	ENSSHAG00000007344	ENSSHAG00000008447	ENSSHAG00000009809	SQSTM1 (ENSSHAG00000025384)	MGAT4B (ENSSHAG00000010968)	LTC4S (ENSSHAG00000025649)	MAML1 (ENSSHAG00000011151)	ENSSHAG00000011510	ENSSHAG00000028809	ENSSHAG00000012805	ENSSHAG00000013874	ENSSHAG00000015173 #21	ENSSHAG00000024966 #22	ENSSHAG00000023391 #23	E2F1 (ENSSHAG00000029215) #26	ENSSHAG00000023415 #24	PXMP4 (ENSSHAG00000029249) #27	ZNF341 (ENSSHAG00000022447) #29	ENSSHAG00000022664	ENSSHAG00000026098 #32	ENSSHAG00000022710 #32	EIF2S2 (ENSSHAG00000029026) #33	ENSSHAG00000031644	AHCY (ENSSHAG00000031421)	ITCH (ENSSHAG00000030062) #36	MAP1LC3A (ENSSHAG00000030605)	PIGU (ENSSHAG00000017606)	TP53INP2 (ENSSHAG00000017777)
Platypus	MODERN SPECIES	19	ENSOANG00000040104	ENSOANG00000036090	ENSOANG00000039787	ENSOANG00000009664	ENSOANG00000014372	ENSOANG00000041955	ENSOANG00000005431	ENSOANG00000015609	ENSOANG00000012145	ENSOANG00000048818	ENSOANG00000043837	ENSOANG00000040269	WDR72 (ENSOANG00000013014)	ONECUT1 (ENSOANG00000040861)	SNTA1 (ENSOANG00000002101) #21	CBFA2T2 (ENSOANG00000002585) #22	ENSOANG00000040856	TMOD3 (ENSOANG00000038195)	LEO1 (ENSOANG00000003376)	MAPK6 (ENSOANG00000004189)	ENSOANG00000041390	GNB5 (ENSOANG00000047160)	MYO5C (ENSOANG00000004161)	MYO5A (ENSOANG00000004162)	ARPP19 (ENSOANG00000040266)	ATOSA (ENSOANG00000002613)	SGK2 (ENSOANG00000039782)	IFT52 (ENSOANG00000014960)	MYBL2 (ENSOANG00000050677)	PTPRT (ENSOANG00000015082)	ENSOANG00000015088
Sauria	ANCESTRAL SPECIES	16	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160950	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Archelosauria	ANCESTRAL SPECIES		ENSGT00390000003446	ENSGT00940000156028	ENSGT01000000215044	ENSGT00940000153998.a	ENSGT00940000162847	ENSGT00960000189441	ENSGT00390000005575	ENSGT00390000004910	ENSGT00940000156202.b	ENSGT00940000153251.a	ENSGT00940000160950	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160950	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Testudinoidea	ANCESTRAL SPECIES	28	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160950	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Testudinidae	ANCESTRAL SPECIES	34	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Goode s thornscrub tortoise	MODERN SPECIES	5	SLA2 (ENSGEVG00005015961)	NDRG3 (ENSGEVG00005015883)	RALGAPB (ENSGEVG00005015620)	CHD6 (ENSGEVG00005015334)	RBL1 (ENSGEVG00005015196)	SAMHD1 (ENSGEVG00005015144)	ENSGEVG00005015088	SOGA1 (ENSGEVG00005014842)	ACSS2 (ENSGEVG00005014698)	GSS (ENSGEVG00005014633)	ENSGEVG00005013945	TRPC4AP (ENSGEVG00005013841)	EDEM2 (ENSGEVG00005013803)	TOX2 (ENSGEVG00005013756)	SNTA1 (ENSGEVG00005013723) #21	CBFA2T2 (ENSGEVG00005013689) #22	ENSGEVG00005013648	ACTL10 (ENSGEVG00005013631) #25	NECAB3 (ENSGEVG00005013465) #23	E2F1 (ENSGEVG00005013271) #26	PXMP4 (ENSGEVG00005013238) #27	ZNF341 (ENSGEVG00005013173) #29	CHMP4B (ENSGEVG00005013137) #30	RALY (ENSGEVG00005013016) #32	EIF2S2 (ENSGEVG00005012979) #33	ASIP (ENSGEVG00005012839) #34	AHCY (ENSGEVG00005012811)	ITCH (ENSGEVG00005012721) #36	DYNLRB1 (ENSGEVG00005012686) #37	MAP1LC3A (ENSGEVG00005012664)	PIGU (ENSGEVG00005012623)
Abingdon island giant tortoise	MODERN SPECIES	1738													EDEM2 (ENSCABG00000022391)	TOX2 (ENSCABG00000022388)	SNTA1 (ENSCABG00000022385) #21	CBFA2T2 (ENSCABG00000022375) #22	ACTL10 (ENSCABG00000022374) #25	NECAB3 (ENSCABG00000022373) #23	E2F1 (ENSCABG00000022372) #26	PXMP4 (ENSCABG00000022371) #27	ZNF341 (ENSCABG00000022370) #29	CHMP4B (ENSCABG00000022369) #30	ENSCABG00000022368	ENSCABG00000022367
Emydidae	ANCESTRAL SPECIES	50	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160950	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00960000191106	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
painted turtle	MODERN SPECIES	700	SLA2 (ENSCPBG00000019447)	NDRG3 (ENSCPBG00000019437)	RALGAPB (ENSCPBG00000019414)	CHD6 (ENSCPBG00000019382)	RBL1 (ENSCPBG00000019364)	SAMHD1 (ENSCPBG00000019358)	ENSCPBG00000019354	SOGA1 (ENSCPBG00000019350)	ACSS2 (ENSCPBG00000019337)	GSS (ENSCPBG00000019329)	ENSCPBG00000019257	TRPC4AP (ENSCPBG00000019208)	EDEM2 (ENSCPBG00000019199)	TOX2 (ENSCPBG00000019193)	SNTA1 (ENSCPBG00000019190) #21	CBFA2T2 (ENSCPBG00000019187) #22	ENSCPBG00000019184	ENSCPBG00000019182	NECAB3 (ENSCPBG00000019179) #23	E2F1 (ENSCPBG00000019177) #26	PXMP4 (ENSCPBG00000019176) #27	ZNF341 (ENSCPBG00000019174) #29	CHMP4B (ENSCPBG00000019173) #30	ENSCPBG00000019171	RALY (ENSCPBG00000019164) #32	EIF2S2 (ENSCPBG00000019159) #33	ASIP (ENSCPBG00000019156) #34	AHCY (ENSCPBG00000018709)	ITCH (ENSCPBG00000018232) #36	MAP1LC3A (ENSCPBG00000018213)	PIGU (ENSCPBG00000018212)
Three-toed box turtle	MODERN SPECIES	108	SLA2 (ENSTMTG00000018980)	NDRG3 (ENSTMTG00000018931)	RALGAPB (ENSTMTG00000018881)	CHD6 (ENSTMTG00000018734)	RBL1 (ENSTMTG00000018676)	SAMHD1 (ENSTMTG00000018637)	ENSTMTG00000018613	SOGA1 (ENSTMTG00000018547)	ACSS2 (ENSTMTG00000018480)	GSS (ENSTMTG00000018443)	MYH7B (ENSTMTG00000018334)	TRPC4AP (ENSTMTG00000018290)	EDEM2 (ENSTMTG00000018270)	TOX2 (ENSTMTG00000018257)	SNTA1 (ENSTMTG00000018232) #21	CBFA2T2 (ENSTMTG00000018209) #22	ENSTMTG00000018196	NECAB3 (ENSTMTG00000018162) #23	E2F1 (ENSTMTG00000018143) #26	PXMP4 (ENSTMTG00000018136) #27	ZNF341 (ENSTMTG00000018098) #29	CHMP4B (ENSTMTG00000018087) #30	ENSTMTG00000018045	RALY (ENSTMTG00000018027) #32	EIF2S2 (ENSTMTG00000018010) #33	ASIP (ENSTMTG00000017959) #34	AHCY (ENSTMTG00000017923)	ITCH (ENSTMTG00000017861) #36	DYNLRB1 (ENSTMTG00000017842) #37	MAP1LC3A (ENSTMTG00000017835)	PIGU (ENSTMTG00000017811)
Chinese turtle	MODERN SPECIES	1953															ENSPSIG00000008084 #21	CBFA2T2 (ENSPSIG00000006165) #22
Archosauria	ANCESTRAL SPECIES	13	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Australian saltwater crocodile	MODERN SPECIES	41	ENSCPRG00005012455	ARHGAP40 (ENSCPRG00005012456)	SGK2 (ENSCPRG00005012467)	IFT52 (ENSCPRG00005012475)	MYBL2 (ENSCPRG00005012490)	ENSCPRG00005012518	ENSCPRG00005012521	ENSCPRG00005012528	ENSCPRG00005012542	TRPC4AP (ENSCPRG00005012634)	EDEM2 (ENSCPRG00005012648)	ENSCPRG00005012655	ENSCPRG00005012691	TOX2 (ENSCPRG00005012700)	SNTA1 (ENSCPRG00005012705) #21	CBFA2T2 (ENSCPRG00005012718) #22	NECAB3 (ENSCPRG00005012733) #23	ENSCPRG00005012740	ACTL10 (ENSCPRG00005012747) #25	E2F1 (ENSCPRG00005012754) #26	PXMP4 (ENSCPRG00005012758) #27	ZNF341 (ENSCPRG00005012761) #29	CHMP4B (ENSCPRG00005012772) #30	ENSCPRG00005012778	RALY (ENSCPRG00005012788) #32	EIF2S2 (ENSCPRG00005012797) #33	ASIP (ENSCPRG00005012814) #34	AHCY (ENSCPRG00005012824)	ITCH (ENSCPRG00005012830) #36	DYNLRB1 (ENSCPRG00005012837) #37	MAP1LC3A (ENSCPRG00005012842)
Aves	ANCESTRAL SPECIES	16	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315
Neognathae	ANCESTRAL SPECIES	16	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315
Galloanserae	ANCESTRAL SPECIES	15	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.bb #30	ENSGT00940000154663.cb #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315
Anatidae	ANCESTRAL SPECIES	22	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.cb #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00390000005197.b	ENSGT00940000157086.b	ENSGT01020000230603	ENSGT00940000160096	ENSGT00940000159787
Pink-footed goose	MODERN SPECIES	10						PTPRT (ENSABRG00000017288)	SOGA1 (ENSABRG00000017382)	ACSS2 (ENSABRG00000017432)	GSS (ENSABRG00000017463)	ENSABRG00000017810	ENSABRG00000018576	TRPC4AP (ENSABRG00000018584)	EDEM2 (ENSABRG00000018594)	TOX2 (ENSABRG00000018605)	SNTA1 (ENSABRG00000018613) #21	CBFA2T2 (ENSABRG00000018621) #22	NECAB3 (ENSABRG00000018624) #23	E2F1 (ENSABRG00000018627) #26	PXMP4 (ENSABRG00000018629) #27	ZNF341 (ENSABRG00000018632) #29	ENSABRG00000018638 #30	ENSABRG00000018650	RALY (ENSABRG00000018676) #32	EIF2S2 (ENSABRG00000018685) #33	ASIP (ENSABRG00000018698) #34	AHCY (ENSABRG00000018714)	RBPJL (ENSABRG00000018726)	MATN4 (ENSABRG00000018746)	ENSABRG00000018749	KCNS1 (ENSABRG00000018756)	STK4 (ENSABRG00000018758)
Duck	MODERN SPECIES	12	ENSAPLG00000023291	ARHGAP40 (ENSAPLG00000007202)	SLC32A1 (ENSAPLG00000007083)	SGK2 (ENSAPLG00000006291)	IFT52 (ENSAPLG00000005680)	MYBL2 (ENSAPLG00000005213)	ENSAPLG00000002683	ENSAPLG00000023177	ACSS2 (ENSAPLG00000015932)	GSS (ENSAPLG00000015589)	ENSAPLG00000011220	TRPC4AP (ENSAPLG00000009980)	EDEM2 (ENSAPLG00000009712)	TOX2 (ENSAPLG00000009436)	SNTA1 (ENSAPLG00000030952) #21	CBFA2T2 (ENSAPLG00000011108) #22	NECAB3 (ENSAPLG00000011538) #23	PXMP4 (ENSAPLG00000012234) #27	ZNF341 (ENSAPLG00000012237) #29	CHMP4B (ENSAPLG00000012481) #30	ENSAPLG00000012568	RALY (ENSAPLG00000012983) #32	EIF2S2 (ENSAPLG00000013245) #33	ASIP (ENSAPLG00000007960) #34	AHCY (ENSAPLG00000007974)	RBPJL (ENSAPLG00000008031)	MATN4 (ENSAPLG00000008140)	ENSAPLG00000017021	KCNS1 (ENSAPLG00000027411)	STK4 (ENSAPLG00000008260)	ENSAPLG00000008374
Phasianidae	ANCESTRAL SPECIES	15	ENSGT01070000257249	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233.a.a	ENSGT00940000158764.b	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.bb #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315	ENSGT00390000015972
Phasianidae_b	ANCESTRAL SPECIES	15	ENSGT01070000257249	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233.a.a	ENSGT00940000158764.b	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663.bb #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315	ENSGT00390000015972
Chicken	MODERN SPECIES	12	ARHGAP40 (ENSGALG00010023712)	SLC32A1 (ENSGALG00010023684)	SGK2 (ENSGALG00010023673)	IFT52 (ENSGALG00010023627)	MYBL2 (ENSGALG00010023572)	ENSGALG00010025008	PTPRT (ENSGALG00010023545)	SOGA1 (ENSGALG00010023482)	ACSS2 (ENSGALG00010023439)	GSS (ENSGALG00010023412)	MYH7B (ENSGALG00010022684)	TRPC4AP (ENSGALG00010022664)	EDEM2 (ENSGALG00010024363)	TOX2 (ENSGALG00010022169)	SNTA1 (ENSGALG00010022144) #21	CBFA2T2 (ENSGALG00010022125) #22	NECAB3 (ENSGALG00010025413) #23	E2F1 (ENSGALG00010022055) #26	PXMP4 (ENSGALG00010022044) #27	ZNF341 (ENSGALG00010022030) #29	CHMP4B (ENSGALG00010024392) #30	ENSGALG00010024375	RALY (ENSGALG00010024769) #32	EIF2S2 (ENSGALG00010024754) #33	ASIP (ENSGALG00010024739) #34	AHCY (ENSGALG00010024732)	ITCH (ENSGALG00010024723) #36	ENSGALG00010024707	ENSGALG00010024685	DYNLRB1 (ENSGALG00010024672) #37	MAP1LC3A (ENSGALG00010024665)
Turkey	MODERN SPECIES	14	ENSMGAG00000015531	ADA (ENSMGAG00000003859)	ENSMGAG00000003949	ENSMGAG00000003874	ENSMGAG00000003970	R3HDML (ENSMGAG00000004016)	ENSMGAG00000004044	ENSMGAG00000004039	ENSMGAG00000017841	ENSMGAG00000002459	ENSMGAG00000002444 #30	ENSMGAG00000002423 #29	ENSMGAG00000002408 #27	ENSMGAG00000020478	E2F1 (ENSMGAG00000002385) #26	ENSMGAG00000002276 #22	ENSMGAG00000002364 #23	ENSMGAG00000020439 #21	ENSMGAG00000002485	ENSMGAG00000022366	ENSMGAG00000002533	ENSMGAG00000002490	ENSMGAG00000002621	ENSMGAG00000000789	ENSMGAG00000002583	ENSMGAG00000000775	RALY (ENSMGAG00000002214) #32	EIF2S2 (ENSMGAG00000002174) #33	ASIP (ENSMGAG00000002166) #34	AHCY (ENSMGAG00000002143)	ITCH (ENSMGAG00000002065) #36
Japanese quail	MODERN SPECIES	12	SLC32A1 (ENSCJPG00005020841)	SGK2 (ENSCJPG00005020840)	IFT52 (ENSCJPG00005020839)	MYBL2 (ENSCJPG00005020838)	PTPRT (ENSCJPG00005020739)	SOGA1 (ENSCJPG00005020720)	ACSS2 (ENSCJPG00005020717)	GSS (ENSCJPG00005020716)	ENSCJPG00005020708	TRPC4AP (ENSCJPG00005020696)	ENSCJPG00005020693	ENSCJPG00005020692	ENSCJPG00005020691	TOX2 (ENSCJPG00005020690)	SNTA1 (ENSCJPG00005020689) #21	CBFA2T2 (ENSCJPG00005020688) #22	NECAB3 (ENSCJPG00005020686) #23	E2F1 (ENSCJPG00005020685) #26	PXMP4 (ENSCJPG00005020684) #27	ZNF341 (ENSCJPG00005020682) #29	CHMP4B (ENSCJPG00005020680) #30	ENSCJPG00005020678	RALY (ENSCJPG00005020667) #32	EIF2S2 (ENSCJPG00005020665) #33	ASIP (ENSCJPG00005020663) #34	AHCY (ENSCJPG00005020661)	ITCH (ENSCJPG00005020530) #36	ENSCJPG00005020529	ENSCJPG00005020528 #37	MAP1LC3A (ENSCJPG00005020526)	MMP24 (ENSCJPG00005020525)
Neognathae_b	ANCESTRAL SPECIES	17	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315
Passeriformes	ANCESTRAL SPECIES	19	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000171155
Passeriformes_d	ANCESTRAL SPECIES	19	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601.fb #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000171155	ENSGT00940000161056.b
Flycatcher	MODERN SPECIES	12	ENSFALG00000005684	SGK2 (ENSFALG00000005698)	ENSFALG00000005735	MYBL2 (ENSFALG00000005745)	ENSFALG00000005753	ENSFALG00000005767	ENSFALG00000005787	GSS (ENSFALG00000022988)	ENSFALG00000005834	TRPC4AP (ENSFALG00000005846)	ENSFALG00000005853	ENSFALG00000023711	ENSFALG00000024458	ENSFALG00000005857	SNTA1 (ENSFALG00000005861) #21	CBFA2T2 (ENSFALG00000005880) #22	ENSFALG00000024659	ACTL10 (ENSFALG00000014485) #25	ENSFALG00000005907 #23	ENSFALG00000005914 #26	PXMP4 (ENSFALG00000005928) #27	ZNF341 (ENSFALG00000005944) #29	CHMP4B (ENSFALG00000005962) #30	ENSFALG00000026368 #32	EIF2S2 (ENSFALG00000010608) #33	ASIP (ENSFALG00000025930) #34	AHCY (ENSFALG00000010589)	ENSFALG00000027527	ENSFALG00000012779	ENSFALG00000025812	EPB41L1 (ENSFALG00000012755)
Passeriformes_g	ANCESTRAL SPECIES	19	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601.fb #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000171155.c	ENSGT00940000161056.b
Passeroidea	ANCESTRAL SPECIES	18	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601.fb #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000160455	ENSGT00940000171155.d.b
Zebra finch	MODERN SPECIES	13	ARHGAP40 (ENSTGUG00000004541)	SLC32A1 (ENSTGUG00000004537)	SGK2 (ENSTGUG00000004480)	IFT52 (ENSTGUG00000004454)	MYBL2 (ENSTGUG00000004426)	PTPRT (ENSTGUG00000004341)	SOGA1 (ENSTGUG00000004310)	ACSS2 (ENSTGUG00000004272)	GSS (ENSTGUG00000004252)	ENSTGUG00000003883	TRPC4AP (ENSTGUG00000003820)	EDEM2 (ENSTGUG00000003813)	TOX2 (ENSTGUG00000024441)	SNTA1 (ENSTGUG00000003805) #21	ENSTGUG00000025881	CBFA2T2 (ENSTGUG00000003776) #22	ENSTGUG00000020460 #25	NECAB3 (ENSTGUG00000003767) #23	E2F1 (ENSTGUG00000028557) #26	PXMP4 (ENSTGUG00000019081) #27	ZNF341 (ENSTGUG00000003745) #29	CHMP4B (ENSTGUG00000003739) #30	ENSTGUG00000003727	RALY (ENSTGUG00000003715) #32	EIF2S2 (ENSTGUG00000024815) #33	ASIP (ENSTGUG00000019882) #34	AHCY (ENSTGUG00000003666)	MMP24 (ENSTGUG00000003646)	EIF6 (ENSTGUG00000024120)	UQCC1 (ENSTGUG00000003601)	ENSTGUG00000022461
Common canary	MODERN SPECIES	21	ENSSCAG00000012195	ARHGAP40 (ENSSCAG00000012178)	SLC32A1 (ENSSCAG00000012166)	SGK2 (ENSSCAG00000012152)	IFT52 (ENSSCAG00000012142)	MYBL2 (ENSSCAG00000012134)	PTPRT (ENSSCAG00000009769)	SOGA1 (ENSSCAG00000009234)	ACSS2 (ENSSCAG00000008852)	GSS (ENSSCAG00000008801)	ENSSCAG00000008445	TRPC4AP (ENSSCAG00000008405)	EDEM2 (ENSSCAG00000008399)	TOX2 (ENSSCAG00000008392)	SNTA1 (ENSSCAG00000008383) #21	CBFA2T2 (ENSSCAG00000008377) #22	ACTL10 (ENSSCAG00000008374) #25	NECAB3 (ENSSCAG00000008372) #23	E2F1 (ENSSCAG00000008365) #26	PXMP4 (ENSSCAG00000008359) #27	ZNF341 (ENSSCAG00000008321) #29	CHMP4B (ENSSCAG00000008301) #30	RALY (ENSSCAG00000008287) #32	EIF2S2 (ENSSCAG00000008277) #33	ASIP (ENSSCAG00000008252) #34	AHCY (ENSSCAG00000008244)	ITCH (ENSSCAG00000008233) #36	DYNLRB1 (ENSSCAG00000008227) #37	MAP1LC3A (ENSSCAG00000008224)
Medium ground finch	MODERN SPECIES	261														TOX2 (ENSGFOG00000005826)	SNTA1 (ENSGFOG00000005847) #21	CBFA2T2 (ENSGFOG00000006230) #22	ENSGFOG00000006238 #25	ENSGFOG00000006244 #23	E2F1 (ENSGFOG00000006251) #26	PXMP4 (ENSGFOG00000006264) #27	ZNF341 (ENSGFOG00000006272) #29	CHMP4B (ENSGFOG00000002598) #30	ENSGFOG00000002622
Great tit	MODERN SPECIES	12	ARHGAP40 (ENSPMJG00000002928)	SLC32A1 (ENSPMJG00000002922)	SGK2 (ENSPMJG00000002883)	IFT52 (ENSPMJG00000002877)	MYBL2 (ENSPMJG00000002868)	PTPRT (ENSPMJG00000002773)	SOGA1 (ENSPMJG00000002632)	ACSS2 (ENSPMJG00000002589)	GSS (ENSPMJG00000002581)	ENSPMJG00000002555	TRPC4AP (ENSPMJG00000002524)	EDEM2 (ENSPMJG00000002496)	TOX2 (ENSPMJG00000002480)	SNTA1 (ENSPMJG00000002437) #21	ENSPMJG00000002424	CBFA2T2 (ENSPMJG00000002396) #22	ACTL10 (ENSPMJG00000002387) #25	NECAB3 (ENSPMJG00000002376) #23	E2F1 (ENSPMJG00000002326) #26	ZNF341 (ENSPMJG00000002302) #29	CHMP4B (ENSPMJG00000002283) #30	ENSPMJG00000002264	ENSPMJG00000002258	RALY (ENSPMJG00000002234) #32	EIF2S2 (ENSPMJG00000002209) #33	ASIP (ENSPMJG00000002109) #34	AHCY (ENSPMJG00000002096)	ENSPMJG00000002089	ENSPMJG00000002059	ENSPMJG00000002055	MMP24 (ENSPMJG00000002049)
Neognathae_c	ANCESTRAL SPECIES	20	ENSGT00950000186009	ENSGT00940000162174	ENSGT00490000043380	ENSGT00940000153776.a.b	ENSGT00390000011581	ENSGT00940000156091.b	ENSGT00940000155326	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00950000182920.b.a.a.c.a.a.a.d	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00940000158315
Kakapo	MODERN SPECIES	5	TOP1 (ENSSHBG00005006987)	PLCG1 (ENSSHBG00005007241)	ZHX3 (ENSSHBG00005008409)	LPIN3 (ENSSHBG00005008414)	EMILIN3 (ENSSHBG00005008424)	ENSSHBG00005008453	ENSSHBG00005008462	SOGA1 (ENSSHBG00005008471)	ACSS2 (ENSSHBG00005008484)	GSS (ENSSHBG00005008492)	ENSSHBG00005008524	TRPC4AP (ENSSHBG00005008644)	EDEM2 (ENSSHBG00005008654)	TOX2 (ENSSHBG00005008660)	SNTA1 (ENSSHBG00005008668) #21	CBFA2T2 (ENSSHBG00005008694) #22	NECAB3 (ENSSHBG00005008836) #23	ACTL10 (ENSSHBG00005008845) #25	E2F1 (ENSSHBG00005008851) #26	PXMP4 (ENSSHBG00005008859) #27	ZNF341 (ENSSHBG00005008883) #29	CHMP4B (ENSSHBG00005009015) #30	ENSSHBG00005009032	RALY (ENSSHBG00005009054) #32	EIF2S2 (ENSSHBG00005009063) #33	ASIP (ENSSHBG00005009077) #34	AHCY (ENSSHBG00005009088)	ITCH (ENSSHBG00005009097) #36	DYNLRB1 (ENSSHBG00005009106) #37	MMP24 (ENSSHBG00005009131)	EIF6 (ENSSHBG00005009143)
Golden eagle	MODERN SPECIES	19	ARHGAP40 (ENSACCG00020000449)	SLC32A1 (ENSACCG00020000471)	SGK2 (ENSACCG00020000501)	IFT52 (ENSACCG00020000543)	MYBL2 (ENSACCG00020000610)	ENSACCG00020000632	PTPRT (ENSACCG00020001463)	SOGA1 (ENSACCG00020002169)	ACSS2 (ENSACCG00020002220)	GSS (ENSACCG00020002255)	ENSACCG00020002312	TRPC4AP (ENSACCG00020002473)	EDEM2 (ENSACCG00020002573)	TOX2 (ENSACCG00020002591)	SNTA1 (ENSACCG00020002610) #21	CBFA2T2 (ENSACCG00020002633) #22	NECAB3 (ENSACCG00020002653) #23	ENSACCG00020002662	E2F1 (ENSACCG00020002681) #26	PXMP4 (ENSACCG00020002694) #27	ZNF341 (ENSACCG00020002715) #29	CHMP4B (ENSACCG00020002728) #30	ENSACCG00020002769	RALY (ENSACCG00020002798) #32	EIF2S2 (ENSACCG00020002819) #33	ASIP (ENSACCG00020002830) #34	AHCY (ENSACCG00020002842)	ITCH (ENSACCG00020002861) #36	DYNLRB1 (ENSACCG00020002883) #37	MAP1LC3A (ENSACCG00020002899)	MMP24 (ENSACCG00020002909)
African ostrich	MODERN SPECIES	818																CBFA2T2 (ENSSCUG00000010850) #22	NECAB3 (ENSSCUG00000010854) #23	ACTL10 (ENSSCUG00000010856) #25	ENSSCUG00000010858 #26	PXMP4 (ENSSCUG00000010860) #27	ZNF341 (ENSSCUG00000010869) #29	CHMP4B (ENSSCUG00000010874) #30	ENSSCUG00000010877	ENSSCUG00000010879	RALY (ENSSCUG00000010883) #32	EIF2S2 (ENSSCUG00000010885) #33	ASIP (ENSSCUG00000010886) #34	AHCY (ENSSCUG00000010887)	ITCH (ENSSCUG00000010891) #36	DYNLRB1 (ENSSCUG00000010899) #37	MAP1LC3A (ENSSCUG00000010903)
Lepidosauria	ANCESTRAL SPECIES	6	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT01040000241001	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
tuatara	MODERN SPECIES	1490														TOX2 (ENSSPUG00000012752)	SNTA1 (ENSSPUG00000012734) #21	CBFA2T2 (ENSSPUG00000012717) #22	ACTL10 (ENSSPUG00000012708) #25	NECAB3 (ENSSPUG00000012690) #23	E2F1 (ENSSPUG00000012675) #26	PXMP4 (ENSSPUG00000012666) #27	ZNF341 (ENSSPUG00000012648) #29	CHMP4B (ENSSPUG00000012632) #30	ENSSPUG00000012622
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Laterata	ANCESTRAL SPECIES	14											ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Common wall lizard	MODERN SPECIES	14	ENSPMRG00000017613	ENSPMRG00000017707	ENSPMRG00000018204	ENSPMRG00000018414	ENSPMRG00000018424	SOGA1 (ENSPMRG00000018470)	ACSS2 (ENSPMRG00000018560)	GSS (ENSPMRG00000018774)	ENSPMRG00000019018	TRPC4AP (ENSPMRG00000020462)	EDEM2 (ENSPMRG00000020578)	ENSPMRG00000020615	ENSPMRG00000020620	TOX2 (ENSPMRG00000020639)	SNTA1 (ENSPMRG00000020670) #21	CBFA2T2 (ENSPMRG00000020681) #22	ENSPMRG00000020695	NECAB3 (ENSPMRG00000020712) #23	ACTL10 (ENSPMRG00000020723) #25	ENSPMRG00000020727	ENSPMRG00000020730	E2F1 (ENSPMRG00000020737) #26	PXMP4 (ENSPMRG00000020743) #27	ZNF341 (ENSPMRG00000020759) #29	CHMP4B (ENSPMRG00000020773) #30	ENSPMRG00000020778	RALY (ENSPMRG00000020782) #32	EIF2S2 (ENSPMRG00000020795) #33	ASIP (ENSPMRG00000020805) #34	ENSPMRG00000020811	AHCY (ENSPMRG00000020815)
Argentine black and white tegu	MODERN SPECIES	28	NDRG3 (ENSSMRG00000002245)	RALGAPB (ENSSMRG00000002234)	CHD6 (ENSSMRG00000002188)	RBL1 (ENSSMRG00000002155)	SAMHD1 (ENSSMRG00000002105)	ENSSMRG00000002097	SOGA1 (ENSSMRG00000002082)	ACSS2 (ENSSMRG00000001992)	GSS (ENSSMRG00000001989)	ENSSMRG00000001837	ENSSMRG00000001637	TRPC4AP (ENSSMRG00000001628)	EDEM2 (ENSSMRG00000001620)	TOX2 (ENSSMRG00000001545)	SNTA1 (ENSSMRG00000001526) #21	CBFA2T2 (ENSSMRG00000001500) #22	ACTL10 (ENSSMRG00000001490) #25	NECAB3 (ENSSMRG00000001460) #23	E2F1 (ENSSMRG00000001456) #26	PXMP4 (ENSSMRG00000001453) #27	ZNF341 (ENSSMRG00000001447) #29	CHMP4B (ENSSMRG00000001390) #30	ENSSMRG00000001388	ENSSMRG00000001318	RALY (ENSSMRG00000001280) #32	EIF2S2 (ENSSMRG00000001247) #33	ENSSMRG00000001230	ASIP (ENSSMRG00000001224) #34	ENSSMRG00000001217	AHCY (ENSSMRG00000001207)	ITCH (ENSSMRG00000001158) #36
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00940000161648	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Lizard	MODERN SPECIES	3	RBL1 (ENSACAG00000006847)	SAMHD1 (ENSACAG00000007007)	TLDC2 (ENSACAG00000007093)	SOGA1 (ENSACAG00000007120)	ENSACAG00000007148	ENSACAG00000007388	ENSACAG00000007497	TRPC4AP (ENSACAG00000008237)	ENSACAG00000008338	ENSACAG00000010388	ENSACAG00000036722	ENSACAG00000042806	ENSACAG00000008446	ENSACAG00000043850	SNTA1 (ENSACAG00000008475) #21	CBFA2T2 (ENSACAG00000008567) #22	ENSACAG00000035390	NECAB3 (ENSACAG00000008697) #23	ENSACAG00000002219	ENSACAG00000008761 #26	ENSACAG00000037827 #26	ENSACAG00000042361	PXMP4 (ENSACAG00000008802) #27	ZNF341 (ENSACAG00000008818) #29	CHMP4B (ENSACAG00000008891) #30	ENSACAG00000038084	ENSACAG00000040646	ENSACAG00000037357	ENSACAG00000043994	RALY (ENSACAG00000008983) #32	ENSACAG00000037938
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b.a #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00980000199297
Indian cobra	MODERN SPECIES	2	CHD6 (ENSNNAG00000009784)	ENSNNAG00000009298	ENSNNAG00000009289	RBL1 (ENSNNAG00000007096)	SAMHD1 (ENSNNAG00000006949)	ENSNNAG00000006913	SOGA1 (ENSNNAG00000006897)	ACSS2 (ENSNNAG00000006792)	GSS (ENSNNAG00000006759)	ENSNNAG00000002064	TRPC4AP (ENSNNAG00000001268)	EDEM2 (ENSNNAG00000001243)	ENSNNAG00000001221	TOX2 (ENSNNAG00000001195)	SNTA1 (ENSNNAG00000001177) #21	CBFA2T2 (ENSNNAG00000001161) #22	ENSNNAG00000001144	NECAB3 (ENSNNAG00000001130) #23	E2F1 (ENSNNAG00000001105) #26	PXMP4 (ENSNNAG00000001074) #27	ZNF341 (ENSNNAG00000001049) #29	CHMP4B (ENSNNAG00000001020) #30	ENSNNAG00000001010 #32	ENSNNAG00000000994 #32	EIF2S2 (ENSNNAG00000000981) #33	ASIP (ENSNNAG00000000968) #34	AHCY (ENSNNAG00000000953)	ITCH (ENSNNAG00000000909) #36	DYNLRB1 (ENSNNAG00000000888) #37	MAP1LC3A (ENSNNAG00000000871)	PIGU (ENSNNAG00000000795)
Elapidae_a	ANCESTRAL SPECIES	3	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b.a #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Acanthophiinae	ANCESTRAL SPECIES	2	ENSGT00940000156477	ENSGT00940000160331	ENSGT00950000182872.f.a.a.b	ENSGT00700000104550.a	ENSGT00940000158986	ENSGT00950000183202.a.a	ENSGT00390000013867	ENSGT00950000182982.B	ENSGT00940000156358	ENSGT00390000013764	ENSGT00940000160318	ENSGT00390000018330	ENSGT00940000159233	ENSGT00940000158764	ENSGT00950000182863.A.a.b.a #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #25	ENSGT00950000183131.a #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000154258.a #34	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941	ENSGT00530000063829.C
Mainland tiger snake	MODERN SPECIES	159																CBFA2T2 (ENSNSUG00000006819) #22	ACTL10 (ENSNSUG00000006816) #25	NECAB3 (ENSNSUG00000006812) #23	E2F1 (ENSNSUG00000006810) #26	PXMP4 (ENSNSUG00000006808) #27	ZNF341 (ENSNSUG00000006805) #29	CHMP4B (ENSNSUG00000006802) #30	ENSNSUG00000006800 #32	ENSNSUG00000006799 #32	EIF2S2 (ENSNSUG00000006794) #33	ASIP (ENSNSUG00000006791) #34	AHCY (ENSNSUG00000006790)	ITCH (ENSNSUG00000004770) #36	DYNLRB1 (ENSNSUG00000004757) #37	MAP1LC3A (ENSNSUG00000004753)	PIGU (ENSNSUG00000004739)
Eastern brown snake	MODERN SPECIES	8	NDRG3 (ENSPTXG00000000472)	RALGAPB (ENSPTXG00000000412)	ENSPTXG00000000404	CHD6 (ENSPTXG00000000268)	SAMHD1 (ENSPTXG00000000069)	ENSPTXG00000000040	SOGA1 (ENSPTXG00000007847)	ACSS2 (ENSPTXG00000007845)	GSS (ENSPTXG00000007844)	ENSPTXG00000007842	TRPC4AP (ENSPTXG00000007841)	EDEM2 (ENSPTXG00000007840)	ENSPTXG00000007839	TOX2 (ENSPTXG00000007838)	SNTA1 (ENSPTXG00000007837) #21	CBFA2T2 (ENSPTXG00000007823) #22	ACTL10 (ENSPTXG00000007822) #25	NECAB3 (ENSPTXG00000007818) #23	E2F1 (ENSPTXG00000007817) #26	PXMP4 (ENSPTXG00000007816) #27	ZNF341 (ENSPTXG00000007815) #29	CHMP4B (ENSPTXG00000007814) #30	ENSPTXG00000007812 #32	ENSPTXG00000007811 #32	EIF2S2 (ENSPTXG00000007809) #33	ASIP (ENSPTXG00000007806) #34	AHCY (ENSPTXG00000007803)	ITCH (ENSPTXG00000007800) #36	DYNLRB1 (ENSPTXG00000007798) #37	MAP1LC3A (ENSPTXG00000007795)	PIGU (ENSPTXG00000007794)
Blue-lipped sea krait	MODERN SPECIES	4784																ENSLLTG00000015481 #22	ENSLLTG00000015479 ##22
Anura	ANCESTRAL SPECIES	50								ENSGT00390000013867	ENSGT00950000183202.a.a	ENSGT00940000158986	ENSGT00700000104550.a	ENSGT00940000158764	ENSGT00940000168101.a	ENSGT00950000182863.A.a.b #21	ENSGT00390000018558	ENSGT00950000183176.a #22	ENSGT01070000255540	ENSGT00950000183131.a.c #23	ENSGT00950000183131.a.d #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #29	ENSGT00940000154663 #30	ENSGT00940000157601 #32	ENSGT00390000001804 #33	ENSGT00940000176173	ENSGT00950000182981.a	ENSGT00940000157014 #36	ENSGT00390000011067.A #37	ENSGT00940000158853	ENSGT00390000014941
Leishan spiny toad	MODERN SPECIES	3	ENSLLEG00000026819	RAB22A (ENSLLEG00000027003)	ENSLLEG00000027127	VAPB (ENSLLEG00000027149)	APCDD1L (ENSLLEG00000027178)	STX16 (ENSLLEG00000027234)	NPEPL1 (ENSLLEG00000027415)	ENSLLEG00000027554	ENSLLEG00000027654	ENSLLEG00000027708	GNAS (ENSLLEG00000027778)	ENSLLEG00000028306	NELFCD (ENSLLEG00000028355)	CTSZ (ENSLLEG00000028583)	PIGT (ENSLLEG00000028639)	CBFA2T2 (ENSLLEG00000028694) #22	ENSLLEG00000028809	NECAB3 (ENSLLEG00000028857) #23	ENSLLEG00000028928	E2F1 (ENSLLEG00000028940) #26	PXMP4 (ENSLLEG00000028972) #27	ZNF341 (ENSLLEG00000028995) #29	CHMP4B (ENSLLEG00000029024) #30	RALY (ENSLLEG00000029052) #32	ENSLLEG00000029071	EIF2S2 (ENSLLEG00000029102) #33	DIDO1 (ENSLLEG00000029275)	ENSLLEG00000029306	TCFL5 (ENSLLEG00000029320)	ENSLLEG00000029342	ENSLLEG00000029403
Frog	MODERN SPECIES	1	ergic3 (ENSXETG00000007419)	ENSXETG00000040827	samhd1 (ENSXETG00000007416)	ENSXETG00000046162	ENSXETG00000038789	ENSXETG00000045039	rbl1 (ENSXETG00000007414)	chd6 (ENSXETG00000021445)	ENSXETG00000038070	ralgapb (ENSXETG00000021438)	tox2 (ENSXETG00000021435)	tigd3 (ENSXETG00000034340)	snta1 (ENSXETG00000021433) #21	ENSXETG00000034447	pigt (ENSXETG00000021432)	cbfa2t2 (ENSXETG00000021431) #22	ENSXETG00000031462 #23	ENSXETG00000037342 #23	e2f1 (ENSXETG00000046118) #26	pxmp4 (ENSXETG00000042606) #27	znf341 (ENSXETG00000021426) #29	chmp4b (ENSXETG00000043359) #30	ENSXETG00000045900	raly (ENSXETG00000019514) #32	asip (ENSXETG00000044164)	eif2s2 (ENSXETG00000019507) #33	dynlrb1 (ENSXETG00000019475) #36	ahcy (ENSXETG00000019486)	map1lc3a (ENSXETG00000019473)	pigu (ENSXETG00000019472)	tp53inp2 (ENSXETG00000046826)