Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b ##19	ENSGT01100000263546.e.b ##19	ENSGT01100000263546.e.a.b ##19	ENSGT01100000263546.e.a.a.a.b ##19	ENSGT01100000263546.d.b.a.a.a.b #17	ENSGT01100000263546.d.b.a.a.a.a #18	ENSGT01100000263546.d.b.b #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020	ENSGT00940000162922 #24	ENSGT00940000159472 #25	ENSGT00390000001562 #26	ENSGT00390000000546 #27	ENSGT00940000154663 #28	ENSGT00940000157601 #29	ENSGT00390000001804 #30	ENSGT00940000154258.a #31	ENSGT00950000182981.a #32	ENSGT00940000157014 #33	ENSGT00390000011067.A #34	ENSGT00940000158853 #36	ENSGT00390000014941 #35
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b ##19	ENSGT01100000263546.e.b ##19	ENSGT01100000263546.e.a.b ##19	ENSGT01100000263546.e.a.a.a.b ##19	ENSGT01100000263546.d.b.a.a.a.b #17	ENSGT01100000263546.d.b.a.a.a.a #18	ENSGT01100000263546.d.b.b #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #23	ENSGT00390000013020	ENSGT00940000162922 #24	ENSGT00940000159472 #25	ENSGT00390000001562 #26	ENSGT00390000000546 #27	ENSGT00940000154663 #28	ENSGT00940000157601 #29	ENSGT00390000001804 #30	ENSGT00940000154258.a #31	ENSGT00950000182981.a #32	ENSGT00940000157014 #33	ENSGT00390000011067.A #34	ENSGT00940000158853 #36	ENSGT00390000014941 #35
Guinea pig	MODERN SPECIES	45											ENSCPOG00000013128 #17	BPIFA1 (ENSCPOG00000014220) #18	BPIFB1 (ENSCPOG00000005568) #19	CDK5RAP1 (ENSCPOG00000006663) #20	SNTA1 (ENSCPOG00000005179) #21	CBFA2T2 (ENSCPOG00000001721) #22	NECAB3 (ENSCPOG00000020859) #23	ENSCPOG00000022109 #24	E2F1 (ENSCPOG00000001800) #25	PXMP4 (ENSCPOG00000024804) #26	ZNF341 (ENSCPOG00000003820) #27	CHMP4B (ENSCPOG00000035794) #28	RALY (ENSCPOG00000000309) #29	EIF2S2 (ENSCPOG00000040226) #30	ASIP (ENSCPOG00000005139) #31	AHCY (ENSCPOG00000014740) #32	ITCH (ENSCPOG00000013787) #33	DYNLRB1 (ENSCPOG00000013798) #34	PIGU (ENSCPOG00000013806) #35	MAP1LC3A (ENSCPOG00000030093) #36	TP53INP2 (ENSCPOG00000030059) #37
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.i.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b ##19	ENSGT01100000263546.e.b ##19	ENSGT01100000263546.e.a.b ##19	ENSGT01100000263546.e.a.a.a.b ##19	ENSGT01100000263546.d.b.a.a.a.b #17	ENSGT01100000263546.d.b.a.a.a.a #18	ENSGT01100000263546.d.b.b #19	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020	ENSGT00940000162922 #24	ENSGT00950000183131.a #23	ENSGT00940000159472 #25	ENSGT00390000001562 #26	ENSGT00390000000546 #27	ENSGT00940000154663 #28	ENSGT00940000157601 #29	ENSGT00390000001804 #30	ENSGT00940000154258.a #31	ENSGT00950000182981.a #32	ENSGT00940000157014 #33	ENSGT00390000011067.A #34	ENSGT00940000158853 #36	ENSGT00390000014941 #35
Long-tailed chinchilla	MODERN SPECIES	129	ASXL1 (ENSCLAG00000017264)	NOL4L (ENSCLAG00000017265)	COMMD7 (ENSCLAG00000017227)	DNMT3B (ENSCLAG00000017043)	ENSCLAG00000017109	SUN5 (ENSCLAG00000017254)	BPIFB2 (ENSCLAG00000017195) ##19	BPIFB6 (ENSCLAG00000016956) ##19	BPIFB3 (ENSCLAG00000016914) ##19	BPIFB4 (ENSCLAG00000016722) ##19	BPIFA3 (ENSCLAG00000016843) #17	BPIFA1 (ENSCLAG00000017206) #18	BPIFB1 (ENSCLAG00000016830) #19	CDK5RAP1 (ENSCLAG00000015460) #20	SNTA1 (ENSCLAG00000015283) #21	CBFA2T2 (ENSCLAG00000017277) #22	ENSCLAG00000017072	ACTL10 (ENSCLAG00000018112) #24	NECAB3 (ENSCLAG00000017054) #23	E2F1 (ENSCLAG00000017077) #25	PXMP4 (ENSCLAG00000017245) #26	ZNF341 (ENSCLAG00000016902) #27	CHMP4B (ENSCLAG00000017205) #28	RALY (ENSCLAG00000016899) #29	ENSCLAG00000017263 #30	ASIP (ENSCLAG00000017188) #31	AHCY (ENSCLAG00000017278) #32	ITCH (ENSCLAG00000016997) #33	DYNLRB1 (ENSCLAG00000016878) #34	MAP1LC3A (ENSCLAG00000016760) #36	PIGU (ENSCLAG00000016489) #35
Degu	MODERN SPECIES	78	ENSODEG00000012036	SUN5 (ENSODEG00000012284)	BPIFB2 (ENSODEG00000012498) ##19	BPIFB6 (ENSODEG00000011706) ##19	BPIFB3 (ENSODEG00000012502) ##19	BPIFB4 (ENSODEG00000013037) ##19	ENSODEG00000012670	ENSODEG00000012886	ENSODEG00000013174	BPIFA3 (ENSODEG00000011797) #17	BPIFA1 (ENSODEG00000011803) #18	BPIFB1 (ENSODEG00000012392) #19	CDK5RAP1 (ENSODEG00000013190) #20	SNTA1 (ENSODEG00000012817) #21	ENSODEG00000019960	CBFA2T2 (ENSODEG00000012562) #22	ENSODEG00000013862	NECAB3 (ENSODEG00000012739) #23	ENSODEG00000013210	E2F1 (ENSODEG00000012327) #25	PXMP4 (ENSODEG00000015173) #26	ZNF341 (ENSODEG00000013884) #27	ENSODEG00000012366 #28	ENSODEG00000012831 #29	ENSODEG00000012151 #30	ENSODEG00000012943	ENSODEG00000015189	ENSODEG00000020169	ASIP (ENSODEG00000013289) #31	AHCY (ENSODEG00000013391) #32	ENSODEG00000013834
Naked mole-rat female	MODERN SPECIES	6											ENSHGLG00000039669	CDK5RAP1 (ENSHGLG00000005146) #20	SNTA1 (ENSHGLG00000006583) #21	ENSHGLG00000018147	ENSHGLG00000047164	CBFA2T2 (ENSHGLG00000018266) #22	ENSHGLG00000009659 #23	E2F1 (ENSHGLG00000009301) #25	ENSHGLG00000041428	PXMP4 (ENSHGLG00000016991) #26	ZNF341 (ENSHGLG00000013786) #27	ENSHGLG00000041357 #28	ENSHGLG00000032344	ENSHGLG00000042490	RALY (ENSHGLG00000017779) #29	ENSHGLG00000031940 #31	AHCY (ENSHGLG00000009751) #32	ITCH (ENSHGLG00000005001) #33	ENSHGLG00000010397 #34	MAP1LC3A (ENSHGLG00000009257) #36	ENSHGLG00000008565 #35