Glires	ANCESTRAL SPECIES	17	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Cricetidae	ANCESTRAL SPECIES	5	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804.y.b #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Chinese hamster chok1gshd	MODERN SPECIES	188	Bpifb2 (ENSCGRG00001009296) #7	Bpifb6 (ENSCGRG00001023599) #8	Bpifb3 (ENSCGRG00001020775) #9	Bpifb4 (ENSCGRG00001014345) #10	Bpifa6 (ENSCGRG00001023934) #11	Bpifa2 (ENSCGRG00001020519) #12	Bpifa3 (ENSCGRG00001017514) #13	Bpifa1 (ENSCGRG00001014265) #14	Bpifa5 (ENSCGRG00001018207) #15	Bpifb1 (ENSCGRG00001022649) #16	Bpifb5 (ENSCGRG00001022241) #17	ENSCGRG00001021876 #18	ENSCGRG00001018519 #19	Cdk5rap1 (ENSCGRG00001020687) #20	Snta1 (ENSCGRG00001016422) #21	Cbfa2t2 (ENSCGRG00001014529) #22	1700003F12Rik (ENSCGRG00001012971) #23	Actl10 (ENSCGRG00001006945) #24	Necab3 (ENSCGRG00001013760) #25	E2f1 (ENSCGRG00001001729) #26	Pxmp4 (ENSCGRG00001010342) #27	Zfp341 (ENSCGRG00001014101) #28	Chmp4b (ENSCGRG00001000652) #29	Raly (ENSCGRG00001014652) #30	ENSCGRG00001001614 #31	ENSCGRG00001004778 #32	a (ENSCGRG00001021768) #33	ENSCGRG00001012673 #34	Itch (ENSCGRG00001020207) #35	Dynlrb1 (ENSCGRG00001013277) #36	Map1lc3a (ENSCGRG00001005970) #37
Golden Hamster	MODERN SPECIES	791									Bpifa3 (ENSMAUG00000013387) #13	Bpifa1 (ENSMAUG00000014646) #14	Bpifa5 (ENSMAUG00000012713) #15	Bpifb1 (ENSMAUG00000011247) #16	Bpifb5 (ENSMAUG00000008139) #17	Cdk5rap1 (ENSMAUG00000000980) #20	Snta1 (ENSMAUG00000013984) #21	Cbfa2t2 (ENSMAUG00000001412) #22	1700003F12Rik (ENSMAUG00000022072) #23	Necab3 (ENSMAUG00000015672) #25	E2f1 (ENSMAUG00000000913) #26	Pxmp4 (ENSMAUG00000015504) #27	Zfp341 (ENSMAUG00000011481) #28	Chmp4b (ENSMAUG00000020158) #29	Raly (ENSMAUG00000005739) #30	ENSMAUG00000009771 #31	a (ENSMAUG00000021663) #33	ENSMAUG00000006591 #34	Itch (ENSMAUG00000001009) #35	Dynlrb1 (ENSMAUG00000019405) #36	Pigu (ENSMAUG00000012275)	Trp53inp2 (ENSMAUG00000004915)	ENSMAUG00000020422
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Prairie vole	MODERN SPECIES	357	Tmem74b (ENSMOCG00000012931)	Rad21l (ENSMOCG00000001417)	Snph (ENSMOCG00000019255)	Sdcbp2 (ENSMOCG00000018189)	Fkbp1a (ENSMOCG00000015631)	Nsfl1c (ENSMOCG00000002492)	Bpifa6 (ENSMOCG00000013390) #11	Bpifa2 (ENSMOCG00000020017) #12	Bpifa3 (ENSMOCG00000007021) #13	Bpifa1 (ENSMOCG00000022067) #14	Bpifa5 (ENSMOCG00000015053) #15	Bpifb1 (ENSMOCG00000011657) #16	Bpifb5 (ENSMOCG00000002643) #17	Cdk5rap1 (ENSMOCG00000002846) #20	Snta1 (ENSMOCG00000005630) #21	Cbfa2t2 (ENSMOCG00000015541) #22	1700003F12Rik (ENSMOCG00000019597) #23	Necab3 (ENSMOCG00000000497) #25	E2f1 (ENSMOCG00000012464) #26	Pxmp4 (ENSMOCG00000003745) #27	Zfp341 (ENSMOCG00000004075) #28	Chmp4b (ENSMOCG00000022208) #29	ENSMOCG00000017228	Raly (ENSMOCG00000009450) #30	Eif2s2 (ENSMOCG00000012809) #31	a (ENSMOCG00000006735) #33	ENSMOCG00000021599 #34	Itch (ENSMOCG00000015148) #35	Dynlrb1 (ENSMOCG00000001553) #36	Map1lc3a (ENSMOCG00000022232) #37	Pigu (ENSMOCG00000012991)
Northern American deer mouse	MODERN SPECIES	17	Bpifb3 (ENSPEMG00000016514) #9	Bpifb4 (ENSPEMG00000008153) #10	Bpifa6 (ENSPEMG00000016037) #11	Bpifa2 (ENSPEMG00000015949) #12	ENSPEMG00000027075	ENSPEMG00000028840	Bpifa3 (ENSPEMG00000008523) #13	Bpifa1 (ENSPEMG00000014511) #14	Bpifa5 (ENSPEMG00000011773) #15	Bpifb1 (ENSPEMG00000018971) #16	Bpifb5 (ENSPEMG00000007792) #17	ENSPEMG00000011960 #18	Cdk5rap1 (ENSPEMG00000017045) #20	Snta1 (ENSPEMG00000003510) #21	ENSPEMG00000030394	Cbfa2t2 (ENSPEMG00000023470) #22	Necab3 (ENSPEMG00000011260) #25	1700003F12Rik (ENSPEMG00000031171) #23	Actl10 (ENSPEMG00000026578) #24	E2f1 (ENSPEMG00000018049) #26	Pxmp4 (ENSPEMG00000023523) #27	Zfp341 (ENSPEMG00000022506) #28	Chmp4b (ENSPEMG00000021658) #29	Raly (ENSPEMG00000021466) #30	Eif2s2 (ENSPEMG00000023172) #31	a (ENSPEMG00000023599) #33	ENSPEMG00000024071 #34	Itch (ENSPEMG00000021623) #35	Dynlrb1 (ENSPEMG00000001641) #36	Map1lc3a (ENSPEMG00000001010) #37	Pigu (ENSPEMG00000001185)
Murinae	ANCESTRAL SPECIES	1	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT00940000171996	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Mus	ANCESTRAL SPECIES	1	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37
Mouse	MODERN SPECIES	11	Bpifb2 (ENSMUSG00000027481) #7	Bpifb6 (ENSMUSG00000068009) #8	Bpifb3 (ENSMUSG00000068008) #9	Bpifb4 (ENSMUSG00000074665) #10	Bpifa6 (ENSMUSG00000078998) #11	Bpifa2 (ENSMUSG00000042459) #12	Bpifa3 (ENSMUSG00000027482) #13	Bpifa1 (ENSMUSG00000027483) #14	Bpifa5 (ENSMUSG00000027484) #15	Bpifb1 (ENSMUSG00000027485) #16	Bpifb5 (ENSMUSG00000038572) #17	Bpifb9a (ENSMUSG00000067998) #18	Bpifb9b (ENSMUSG00000067996) #18	Cdk5rap1 (ENSMUSG00000027487) #20	Snta1 (ENSMUSG00000027488) #21	Cbfa2t2 (ENSMUSG00000038533) #22	Necab3 (ENSMUSG00000027489) #25	1700003F12Rik (ENSMUSG00000038523) #23	Actl10 (ENSMUSG00000078129) #24	E2f1 (ENSMUSG00000027490) #26	Pxmp4 (ENSMUSG00000000876) #27	Zfp341 (ENSMUSG00000059842) #28	Chmp4b (ENSMUSG00000038467) #29	Raly (ENSMUSG00000027593) #30	a (ENSMUSG00000027596) #33	Eif2s2 (ENSMUSG00000074656) #31	Ahcy (ENSMUSG00000027597) #34	Itch (ENSMUSG00000027598) #35	Dynlrb1 (ENSMUSG00000047459) #36	Map1lc3a (ENSMUSG00000027602) #37	Pigu (ENSMUSG00000038383)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01010000222653 #11	ENSGT01100000263546.d.b.a.b #12	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a.c #14	ENSGT01100000263546.d.b.a.a.a.a.d #15	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00860000136314	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37
Steppe mouse	MODERN SPECIES	27													Cdk5rap1 (ENSMSIG00000001010) #20	Snta1 (ENSMSIG00000001125) #21	ENSMSIG00000001135	Cbfa2t2 (ENSMSIG00000001148) #22	Necab3 (ENSMSIG00000001205) #25	1700003F12Rik (ENSMSIG00000001368) #23	Actl10 (ENSMSIG00000001387) #24	E2f1 (ENSMSIG00000001395) #26	Pxmp4 (ENSMSIG00000001438) #27	ENSMSIG00000001473	Zfp341 (ENSMSIG00000001480) #28	Chmp4b (ENSMSIG00000001595) #29	ENSMSIG00000001612	Raly (ENSMSIG00000001654) #30	Eif2s2 (ENSMSIG00000001803) #31	a (ENSMSIG00000001870) #33	ENSMSIG00000001894 #34	Itch (ENSMSIG00000001955) #35	Dynlrb1 (ENSMSIG00000002016) #36
spretus	MODERN SPECIES	11	Bpifb2 (MGP_SPRETEiJ_G0025416) #7	Bpifb6 (MGP_SPRETEiJ_G0025417) #8	Bpifb3 (MGP_SPRETEiJ_G0025418) #9	MGP_SPRETEiJ_G0025419 #10	Bpifa6 (MGP_SPRETEiJ_G0025420) #11	Bpifa2 (MGP_SPRETEiJ_G0025421) #12	Bpifa3 (MGP_SPRETEiJ_G0025422) #13	Bpifa1 (MGP_SPRETEiJ_G0025423) #14	Bpifa5 (MGP_SPRETEiJ_G0025424) #15	Bpifb1 (MGP_SPRETEiJ_G0025425) #16	Bpifb5 (MGP_SPRETEiJ_G0025426) #17	MGP_SPRETEiJ_G0025427 #18	MGP_SPRETEiJ_G0025428 #18	Cdk5rap1 (MGP_SPRETEiJ_G0025429) #20	Snta1 (MGP_SPRETEiJ_G0025430) #21	Cbfa2t2 (MGP_SPRETEiJ_G0025431) #22	Necab3 (MGP_SPRETEiJ_G0025432) #25	1700003F12Rik (MGP_SPRETEiJ_G0025433) #23	Actl10 (MGP_SPRETEiJ_G0025434) #24	E2f1 (MGP_SPRETEiJ_G0025435) #26	Pxmp4 (MGP_SPRETEiJ_G0025436) #27	MGP_SPRETEiJ_G0025437	MGP_SPRETEiJ_G0025438	Chmp4b (MGP_SPRETEiJ_G0025439) #29	MGP_SPRETEiJ_G0025440	Raly (MGP_SPRETEiJ_G0025441) #30	a (MGP_SPRETEiJ_G0025442) #33	Eif2s2 (MGP_SPRETEiJ_G0025443) #31	MGP_SPRETEiJ_G0025444 #34	Itch (MGP_SPRETEiJ_G0025445) #35	Dynlrb1 (MGP_SPRETEiJ_G0025446) #36
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0024493	Sun5 (MGP_CAROLIEiJ_G0024494)	Bpifb2 (MGP_CAROLIEiJ_G0024495) #7	MGP_CAROLIEiJ_G0024496 #8	Bpifb3 (MGP_CAROLIEiJ_G0024497) #9	MGP_CAROLIEiJ_G0024498 #10	Bpifa6 (MGP_CAROLIEiJ_G0024499) #11	Bpifa2 (MGP_CAROLIEiJ_G0024500) #12	Bpifa3 (MGP_CAROLIEiJ_G0024501) #13	Bpifa1 (MGP_CAROLIEiJ_G0024502) #14	Bpifa5 (MGP_CAROLIEiJ_G0024503) #15	Bpifb1 (MGP_CAROLIEiJ_G0024504) #16	Bpifb5 (MGP_CAROLIEiJ_G0024505) #17	MGP_CAROLIEiJ_G0024507 #20	Snta1 (MGP_CAROLIEiJ_G0024508) #21	Cbfa2t2 (MGP_CAROLIEiJ_G0024509) #22	Necab3 (MGP_CAROLIEiJ_G0024510) #25	1700003F12Rik (MGP_CAROLIEiJ_G0024511) #23	Actl10 (MGP_CAROLIEiJ_G0024512) #24	E2f1 (MGP_CAROLIEiJ_G0024513) #26	Pxmp4 (MGP_CAROLIEiJ_G0024514) #27	MGP_CAROLIEiJ_G0024515	Zfp341 (MGP_CAROLIEiJ_G0024516) #28	Chmp4b (MGP_CAROLIEiJ_G0024517) #29	MGP_CAROLIEiJ_G0024518	Raly (MGP_CAROLIEiJ_G0024519) #30	a (MGP_CAROLIEiJ_G0024520) #33	Eif2s2 (MGP_CAROLIEiJ_G0024521) #31	MGP_CAROLIEiJ_G0024522 #34	Itch (MGP_CAROLIEiJ_G0024523) #35	Dynlrb1 (MGP_CAROLIEiJ_G0024524) #36
Shrew mouse	MODERN SPECIES	16	Sun5 (MGP_PahariEiJ_G0025937)	Bpifb2 (MGP_PahariEiJ_G0025938) #7	Bpifb6 (MGP_PahariEiJ_G0025939) #8	Bpifb3 (MGP_PahariEiJ_G0025940) #9	MGP_PahariEiJ_G0025941 #10	Bpifa6 (MGP_PahariEiJ_G0025942) #11	MGP_PahariEiJ_G0025943 #12	MGP_PahariEiJ_G0025944	Bpifa3 (MGP_PahariEiJ_G0025945) #13	Bpifa1 (MGP_PahariEiJ_G0025946) #14	Bpifa5 (MGP_PahariEiJ_G0025947) #15	Bpifb1 (MGP_PahariEiJ_G0025948) #16	Bpifb5 (MGP_PahariEiJ_G0025949) #17	Cdk5rap1 (MGP_PahariEiJ_G0025951) #20	Snta1 (MGP_PahariEiJ_G0025952) #21	Cbfa2t2 (MGP_PahariEiJ_G0025953) #22	Necab3 (MGP_PahariEiJ_G0025954) #25	1700003F12Rik (MGP_PahariEiJ_G0025955) #23	Actl10 (MGP_PahariEiJ_G0025956) #24	E2f1 (MGP_PahariEiJ_G0025957) #26	Pxmp4 (MGP_PahariEiJ_G0025958) #27	MGP_PahariEiJ_G0025959	Zfp341 (MGP_PahariEiJ_G0025960) #28	Chmp4b (MGP_PahariEiJ_G0025961) #29	MGP_PahariEiJ_G0025962	Raly (MGP_PahariEiJ_G0025963) #30	a (MGP_PahariEiJ_G0025964) #33	Eif2s2 (MGP_PahariEiJ_G0025965) #31	MGP_PahariEiJ_G0025966	MGP_PahariEiJ_G0025967 #34	Itch (MGP_PahariEiJ_G0025968) #35
Rat	MODERN SPECIES	13	Sun5 (ENSRNOG00000027221)	Bpifb2 (ENSRNOG00000012197) #7	Bpifb6 (ENSRNOG00000013371) #8	Bpifb3 (ENSRNOG00000034174) #10	Bpifa6 (ENSRNOG00000043258) #11	Bpifa2 (ENSRNOG00000013540) #12	Bpifa2f (ENSRNOG00000036870)	Bpifa3 (ENSRNOG00000013778) #13	Bpifa1 (ENSRNOG00000013859) #14	Bpifa5 (ENSRNOG00000013908) #15	Bpifb1 (ENSRNOG00000015468) #16	Bpifb5 (ENSRNOG00000025238) #17	LOC690507 (ENSRNOG00000015637) #18	ENSRNOG00000064935 #20	Snta1 (ENSRNOG00000016062) #21	Cbfa2t2 (ENSRNOG00000016352) #22	Sms-ps2 (ENSRNOG00000031275)	AABR07054362.1 (ENSRNOG00000050899)	E2f1 (ENSRNOG00000016708) #26	RGD1561517 (ENSRNOG00000016583) #23	Actl10 (ENSRNOG00000036864) #24	Pxmp4 (ENSRNOG00000016975) #27	Zfp341 (ENSRNOG00000017086) #28	ENSRNOG00000063087	AABR07054368.1 (ENSRNOG00000029996)	Chmp4b (ENSRNOG00000046585) #29	LOC690597 (ENSRNOG00000055182)	Raly (ENSRNOG00000017405) #30	Eif2s2 (ENSRNOG00000017447) #31	Asip (ENSRNOG00000017701) #33	Ahcy (ENSRNOG00000017777) #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	1717																Cbfa2t2 (ENSNGAG00000006999) #22	Necab3 (ENSNGAG00000016266) #25	E2f1 (ENSNGAG00000012431) #26	Pxmp4 (ENSNGAG00000005193) #27	Zfp341 (ENSNGAG00000009722) #28	Chmp4b (ENSNGAG00000011108) #29	Raly (ENSNGAG00000001263) #30	Eif2s2 (ENSNGAG00000004708) #31
Lesser Egyptian jerboa	MODERN SPECIES	149	ENSJJAG00000021569	ENSJJAG00000000449	Commd7 (ENSJJAG00000010654)	ENSJJAG00000000621	Mapre1 (ENSJJAG00000018249)	Sun5 (ENSJJAG00000021388)	Bpifb2 (ENSJJAG00000017859) #7	ENSJJAG00000019744 #8	Bpifb4 (ENSJJAG00000019678) #10	Bpifa3 (ENSJJAG00000012935) #13	ENSJJAG00000022519 #14	Bpifb1 (ENSJJAG00000023259) #16	Bpifb5 (ENSJJAG00000016027) #17	ENSJJAG00000016210 #18	Snta1 (ENSJJAG00000020267) #21	Cbfa2t2 (ENSJJAG00000012293) #22	Necab3 (ENSJJAG00000020960) #25	1700003F12Rik (ENSJJAG00000010475) #23	E2f1 (ENSJJAG00000022378) #26	Pxmp4 (ENSJJAG00000016829) #27	Zfp341 (ENSJJAG00000020905) #28	Chmp4b (ENSJJAG00000013547) #29	Raly (ENSJJAG00000008473) #30	Eif2s2 (ENSJJAG00000014081) #31	ENSJJAG00000001144	a (ENSJJAG00000018926) #33	ENSJJAG00000022935 #34	Itch (ENSJJAG00000000211) #35	ENSJJAG00000005483 #36	Map1lc3a (ENSJJAG00000010977) #37	Pigu (ENSJJAG00000021314)
Kangaroo rat	MODERN SPECIES	332	ENSDORG00000028887	Nol4l (ENSDORG00000027893)	Commd7 (ENSDORG00000002116)	ENSDORG00000012834	Mapre1 (ENSDORG00000023413)	Bpifb2 (ENSDORG00000004323) #7	Bpifb6 (ENSDORG00000004324) #8	Bpifb3 (ENSDORG00000029748) #9	Bpifb4 (ENSDORG00000001190) #10	Bpifa3 (ENSDORG00000002275) #13	ENSDORG00000002276 #14	Bpifb1 (ENSDORG00000002282) #16	Bpifb5 (ENSDORG00000028380) #17	Cdk5rap1 (ENSDORG00000004622) #20	Snta1 (ENSDORG00000029237) #21	Cbfa2t2 (ENSDORG00000001656) #22	Necab3 (ENSDORG00000013792) #25	E2f1 (ENSDORG00000013793) #26	Pxmp4 (ENSDORG00000030129) #27	Zfp341 (ENSDORG00000000005) #28	Chmp4b (ENSDORG00000011539) #29	Raly (ENSDORG00000013400) #30	Eif2s2 (ENSDORG00000001920) #31	a (ENSDORG00000013768) #33	ENSDORG00000012590 #34	Itch (ENSDORG00000027257) #35	Dynlrb1 (ENSDORG00000028607) #36	ENSDORG00000029351	Pigu (ENSDORG00000001715)	Trp53inp2 (ENSDORG00000026160)	ENSDORG00000016245
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Guinea pig	MODERN SPECIES	45											ENSCPOG00000013128 #13	BPIFA1 (ENSCPOG00000014220) #14	BPIFB1 (ENSCPOG00000005568) #16	CDK5RAP1 (ENSCPOG00000006663) #20	SNTA1 (ENSCPOG00000005179) #21	CBFA2T2 (ENSCPOG00000001721) #22	NECAB3 (ENSCPOG00000020859) #25	ENSCPOG00000022109 #24	E2F1 (ENSCPOG00000001800) #26	PXMP4 (ENSCPOG00000024804) #27	ZNF341 (ENSCPOG00000003820) #28	CHMP4B (ENSCPOG00000035794) #29	RALY (ENSCPOG00000000309) #30	EIF2S2 (ENSCPOG00000040226) #31	ASIP (ENSCPOG00000005139) #33	AHCY (ENSCPOG00000014740) #34	ITCH (ENSCPOG00000013787) #35	DYNLRB1 (ENSCPOG00000013798) #36	PIGU (ENSCPOG00000013806)	MAP1LC3A (ENSCPOG00000030093) #37	TP53INP2 (ENSCPOG00000030059)
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00520000055578.a.a.c	ENSGT00940000157729	ENSGT00390000012419	ENSGT00940000156928	ENSGT00490000043329.a.a.a.i.a	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Long-tailed chinchilla	MODERN SPECIES	129	ASXL1 (ENSCLAG00000017264)	NOL4L (ENSCLAG00000017265)	COMMD7 (ENSCLAG00000017227)	DNMT3B (ENSCLAG00000017043)	ENSCLAG00000017109	SUN5 (ENSCLAG00000017254)	BPIFB2 (ENSCLAG00000017195) #7	BPIFB6 (ENSCLAG00000016956) #8	BPIFB3 (ENSCLAG00000016914) #9	BPIFB4 (ENSCLAG00000016722) #10	BPIFA3 (ENSCLAG00000016843) #13	BPIFA1 (ENSCLAG00000017206) #14	BPIFB1 (ENSCLAG00000016830) #16	CDK5RAP1 (ENSCLAG00000015460) #20	SNTA1 (ENSCLAG00000015283) #21	CBFA2T2 (ENSCLAG00000017277) #22	ENSCLAG00000017072 #23	ACTL10 (ENSCLAG00000018112) #24	NECAB3 (ENSCLAG00000017054) #25	E2F1 (ENSCLAG00000017077) #26	PXMP4 (ENSCLAG00000017245) #27	ZNF341 (ENSCLAG00000016902) #28	CHMP4B (ENSCLAG00000017205) #29	RALY (ENSCLAG00000016899) #30	ENSCLAG00000017263 #31	ASIP (ENSCLAG00000017188) #33	AHCY (ENSCLAG00000017278) #34	ITCH (ENSCLAG00000016997) #35	DYNLRB1 (ENSCLAG00000016878) #36	MAP1LC3A (ENSCLAG00000016760) #37	PIGU (ENSCLAG00000016489)
Degu	MODERN SPECIES	78	ENSODEG00000012036	SUN5 (ENSODEG00000012284)	BPIFB2 (ENSODEG00000012498) #7	BPIFB6 (ENSODEG00000011706) #8	BPIFB3 (ENSODEG00000012502) #9	BPIFB4 (ENSODEG00000013037) #10	ENSODEG00000012670	ENSODEG00000012886	ENSODEG00000013174	BPIFA3 (ENSODEG00000011797) #13	BPIFA1 (ENSODEG00000011803) #14	BPIFB1 (ENSODEG00000012392) #16	CDK5RAP1 (ENSODEG00000013190) #20	SNTA1 (ENSODEG00000012817) #21	ENSODEG00000019960	CBFA2T2 (ENSODEG00000012562) #22	ENSODEG00000013862	NECAB3 (ENSODEG00000012739) #25	ENSODEG00000013210 #23	E2F1 (ENSODEG00000012327) #26	PXMP4 (ENSODEG00000015173) #27	ZNF341 (ENSODEG00000013884) #28	ENSODEG00000012366 #29	ENSODEG00000012831 #30	ENSODEG00000012151 #31	ENSODEG00000012943	ENSODEG00000015189	ENSODEG00000020169	ASIP (ENSODEG00000013289) #33	AHCY (ENSODEG00000013391) #34	ENSODEG00000013834
Naked mole-rat female	MODERN SPECIES	6											ENSHGLG00000039669 #18	CDK5RAP1 (ENSHGLG00000005146) #20	SNTA1 (ENSHGLG00000006583) #21	ENSHGLG00000018147	ENSHGLG00000047164	CBFA2T2 (ENSHGLG00000018266) #22	ENSHGLG00000009659 #25	E2F1 (ENSHGLG00000009301) #26	ENSHGLG00000041428	PXMP4 (ENSHGLG00000016991) #27	ZNF341 (ENSHGLG00000013786) #28	ENSHGLG00000041357 #29	ENSHGLG00000032344	ENSHGLG00000042490	RALY (ENSHGLG00000017779) #30	ENSHGLG00000031940 #33	AHCY (ENSHGLG00000009751) #34	ITCH (ENSHGLG00000005001) #35	ENSHGLG00000010397 #36	MAP1LC3A (ENSHGLG00000009257) #37	ENSHGLG00000008565
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000156928	ENSGT00490000043329.a.a.a.l	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000156928	ENSGT00490000043329.a.a.a.l	ENSGT00940000163617	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00940000158853 #37	ENSGT00390000014941
Marmotini_b	ANCESTRAL SPECIES	29											ENSGT01100000263546.d.b.b #16	ENSGT01100000263546.e.a.a.a.a #17	ENSGT00940000164301 #18	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00390000013020 #23	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000154663 #29	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A.o.b #36	ENSGT00940000158853 #37	ENSGT00390000014941
Arctic ground squirrel	MODERN SPECIES	24											ENSUPAG00010005007 #16	ENSUPAG00010004998 #17	ENSUPAG00010004995 #18	CDK5RAP1 (ENSUPAG00010004922) #20	SNTA1 (ENSUPAG00010004904) #21	CBFA2T2 (ENSUPAG00010004884) #22	C20orf144 (ENSUPAG00010004879) #23	ACTL10 (ENSUPAG00010004872) #24	NECAB3 (ENSUPAG00010004839) #25	E2F1 (ENSUPAG00010004824) #26	PXMP4 (ENSUPAG00010004822) #27	ZNF341 (ENSUPAG00010004795) #28	CHMP4B (ENSUPAG00010004793) #29	RALY (ENSUPAG00010004731) #30	EIF2S2 (ENSUPAG00010004723) #31	ASIP (ENSUPAG00010004712) #33	AHCY (ENSUPAG00010004706) #34	ITCH (ENSUPAG00010004671) #35	DYNLRB1 (ENSUPAG00010004657) #36	MAP1LC3A (ENSUPAG00010004647) #37	PIGU (ENSUPAG00010004614)
Squirrel	MODERN SPECIES	161														CDK5RAP1 (ENSSTOG00000005492) #20	SNTA1 (ENSSTOG00000020522) #21	CBFA2T2 (ENSSTOG00000003478) #22	ACTL10 (ENSSTOG00000000902) #24	NECAB3 (ENSSTOG00000028643) #25	E2F1 (ENSSTOG00000002735) #26	PXMP4 (ENSSTOG00000002748) #27	ZNF341 (ENSSTOG00000002753) #28	CHMP4B (ENSSTOG00000005242) #29	RALY (ENSSTOG00000008810) #30	EIF2S2 (ENSSTOG00000008821) #31	ASIP (ENSSTOG00000003501) #33	AHCY (ENSSTOG00000003013) #34	ITCH (ENSSTOG00000014804) #35	ENSSTOG00000014820 #36	MAP1LC3A (ENSSTOG00000006158) #37	PIGU (ENSSTOG00000014830)	TP53INP2 (ENSSTOG00000014835)
Alpin marmot	MODERN SPECIES		ENSMMMG00000023683	EFCAB8 (ENSMMMG00000023682)	SUN5 (ENSMMMG00000023678)	BPIFB2 (ENSMMMG00000023676) #7	BPIFB6 (ENSMMMG00000023672) #8	BPIFB3 (ENSMMMG00000023666) #9	BPIFB4 (ENSMMMG00000023664) #10	ENSMMMG00000023662	ENSMMMG00000023661	BPIFA3 (ENSMMMG00000023655) #13	BPIFA1 (ENSMMMG00000023653) #14	BPIFB1 (ENSMMMG00000023647) #16	ENSMMMG00000023646 #17	CDK5RAP1 (ENSMMMG00000023644) #20	SNTA1 (ENSMMMG00000023469) #21	CBFA2T2 (ENSMMMG00000023462) #22	ACTL10 (ENSMMMG00000023461) #24	NECAB3 (ENSMMMG00000023457) #25	E2F1 (ENSMMMG00000023454) #26	PXMP4 (ENSMMMG00000023451) #27	ZNF341 (ENSMMMG00000023444) #28	CHMP4B (ENSMMMG00000023441) #29	RALY (ENSMMMG00000023423) #30	EIF2S2 (ENSMMMG00000023422) #31	ASIP (ENSMMMG00000023418) #33	AHCY (ENSMMMG00000023416) #34	ENSMMMG00000023413	ITCH (ENSMMMG00000023404) #35	DYNLRB1 (ENSMMMG00000023395) #36	PIGU (ENSMMMG00000023384)	NCOA6 (ENSMMMG00000023374)
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	11	STOML1 (ENSSVLG00005015186)	PML (ENSSVLG00005015325)	ISLR2 (ENSSVLG00005015492)	ISLR (ENSSVLG00005015502)	STRA6 (ENSSVLG00005015566)	CCDC33 (ENSSVLG00005016264)	CYP11A1 (ENSSVLG00005016426)	SEMA7A (ENSSVLG00005016591)	UBL7 (ENSSVLG00005016929)	ARID3B (ENSSVLG00005016981)	ENSSVLG00005017093	CLK3 (ENSSVLG00005017141)	ENSSVLG00005017169	EXOC1 (ENSSVLG00005017188)	CYP1A1 (ENSSVLG00005017319)	ENSSVLG00005017497 #22	CYP1A2 (ENSSVLG00005017562)	CSK (ENSSVLG00005017636)	CPLX3 (ENSSVLG00005018221)	ULK3 (ENSSVLG00005018262)	SCAMP2 (ENSSVLG00005018318)	MPI (ENSSVLG00005018379)	FAM219B (ENSSVLG00005018600)	ENSSVLG00005018668	RPP25 (ENSSVLG00005018756)	SCAMP5 (ENSSVLG00005018788)	PPCDC (ENSSVLG00005018891)	C15orf39 (ENSSVLG00005019039)	ENSSVLG00005019078	COMMD4 (ENSSVLG00005019452)	NEIL1 (ENSSVLG00005019603)
Eurasian red squirrel	MODERN SPECIES	11	COMMD7 (ENSSVLG00005002025)	ENSSVLG00005002127	ENSSVLG00005002322	ENSSVLG00005002338	SUN5 (ENSSVLG00005002374)	BPIFB2 (ENSSVLG00005002451) #7	BPIFB6 (ENSSVLG00005002490) #8	BPIFB3 (ENSSVLG00005002532) #9	BPIFB4 (ENSSVLG00005002569) #10	BPIFA3 (ENSSVLG00005002605) #13	BPIFA1 (ENSSVLG00005002640) #14	BPIFB1 (ENSSVLG00005002680) #16	ENSSVLG00005002725	CDK5RAP1 (ENSSVLG00005002783) #20	SNTA1 (ENSSVLG00005002824) #21	CBFA2T2 (ENSSVLG00005002847) #22	ENSSVLG00005002886	NECAB3 (ENSSVLG00005002907) #25	ENSSVLG00005002949 #23	ACTL10 (ENSSVLG00005002962) #24	E2F1 (ENSSVLG00005002971) #26	PXMP4 (ENSSVLG00005002986) #27	ZNF341 (ENSSVLG00005003010) #28	ENSSVLG00005003036	CHMP4B (ENSSVLG00005003046) #29	ENSSVLG00005003066 #30	EIF2S2 (ENSSVLG00005003099) #31	ENSSVLG00005003129	ENSSVLG00005003145	ENSSVLG00005003157	ASIP (ENSSVLG00005003171) #33
Lagomorpha	ANCESTRAL SPECIES	33	ENSGT00940000156928	ENSGT00490000043329.a.a.a	ENSGT00930000151259	ENSGT00940000155225	ENSGT01100000263546.e.a.a.b #7	ENSGT01100000263546.e.b #8	ENSGT01100000263546.e.a.b #9	ENSGT01100000263546.e.a.a.a.b #10	ENSGT00510000049750	ENSGT01100000263546.d.b.a.a.a.b #13	ENSGT01100000263546.d.b.a.a.a.a #14	ENSGT01100000263546.d.b.b #16	ENSGT00940000167211	ENSGT00940000160361 #20	ENSGT00950000182863.A.a.b #21	ENSGT00950000183176.a #22	ENSGT00940000162922 #24	ENSGT00950000183131.a #25	ENSGT00390000013020 #23	ENSGT00940000159472 #26	ENSGT00390000001562 #27	ENSGT00390000000546 #28	ENSGT00940000157601 #30	ENSGT00390000001804 #31	ENSGT00940000154258.a #33	ENSGT00950000182981.a #34	ENSGT00940000157014 #35	ENSGT00390000011067.A #36	ENSGT00390000014941	ENSGT00730000111114	ENSGT00940000156917
Rabbit	MODERN SPECIES	15	ASXL1 (ENSOCUG00000035849)	NOL4L (ENSOCUG00000010835)	ENSOCUG00000014339	DNMT3B (ENSOCUG00000017835)	MAPRE1 (ENSOCUG00000024265)	ENSOCUG00000035490	SUN5 (ENSOCUG00000022223)	BPIFB2 (ENSOCUG00000027554) #7	BPIFB6 (ENSOCUG00000006815) #8	BPIFB3 (ENSOCUG00000014883) #9	ENSOCUG00000015717 #13	BPIFA1 (ENSOCUG00000007538) #14	ENSOCUG00000017051 #16	CDK5RAP1 (ENSOCUG00000017069) #20	SNTA1 (ENSOCUG00000011916) #21	CBFA2T2 (ENSOCUG00000000849) #22	ENSOCUG00000000854 #24	NECAB3 (ENSOCUG00000000850) #25	PXMP4 (ENSOCUG00000005415) #27	ZNF341 (ENSOCUG00000024028) #28	RALY (ENSOCUG00000000477) #30	EIF2S2 (ENSOCUG00000000481) #31	ENSOCUG00000038624	asip (ENSOCUG00000011138) #33	ENSOCUG00000036618	ENSOCUG00000008592 #34	ITCH (ENSOCUG00000015354) #35	ENSOCUG00000021027 #36	PIGU (ENSOCUG00000009627)	ENSOCUG00000009634	NCOA6 (ENSOCUG00000009637)
Pika	MODERN SPECIES	4188																CBFA2T2 (ENSOPRG00000001392) #22	NECAB3 (ENSOPRG00000001421) #25	ENSOPRG00000001443 #23	E2F1 (ENSOPRG00000001479) #26	PXMP4 (ENSOPRG00000001496) #27