Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT01030000234598.b.a.b.k.b #7	ENSGT00940000154174.f #8	ENSGT00940000154981 #9	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00940000169594	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #24	ENSGT00390000017288 #25	ENSGT00390000003919 #26	ENSGT00520000058823	ENSGT00940000162506	ENSGT00950000183200.A.a.a	ENSGT00940000160158	ENSGT00390000012084.u	ENSGT00940000162152	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000159074	ENSGT00530000063695.a	ENSGT00940000153669.a	ENSGT01010000223591
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT01030000234598.b.a.b.k.b #7	ENSGT00940000154174.f #8	ENSGT00940000154981 #9	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00940000169594	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #24	ENSGT00390000017288 #25	ENSGT00390000003919 #26	ENSGT00520000058823	ENSGT00940000162506	ENSGT00950000183200.A.a.a	ENSGT00940000160158	ENSGT00390000012084.u	ENSGT00940000162152	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000159074	ENSGT00530000063695.a	ENSGT00940000153669.a	ENSGT00950000183201.a
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT01030000234598.b.a.b.k.b #7	ENSGT00940000154174.f #8	ENSGT00940000154981 #9	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00940000169594	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #24	ENSGT00390000017288 #25	ENSGT00390000003919 #26
Long-tailed chinchilla	MODERN SPECIES	121	NAALAD2 (ENSCLAG00000012474) #7	ENSCLAG00000014963 #8	FAT3 (ENSCLAG00000013669) #9	ENSCLAG00000012677 #10	MTNR1B (ENSCLAG00000012055) #11	SLC36A4 (ENSCLAG00000015872) #12	DEUP1 (ENSCLAG00000013832) #13	SMCO4 (ENSCLAG00000011932) #14	CEP295 (ENSCLAG00000014683) #15	TAF1D (ENSCLAG00000014698) #16	C11orf54 (ENSCLAG00000017272) #17	MED17 (ENSCLAG00000017202) #18	VSTM5 (ENSCLAG00000016423) #19	HEPHL1 (ENSCLAG00000015721) #20	PANX1 (ENSCLAG00000014612) #21	IZUMO1R (ENSCLAG00000015110) #22	ENSCLAG00000013252 #23	GPR83 (ENSCLAG00000013629) #24	ENSCLAG00000013392 #25	ANKRD49 (ENSCLAG00000015054) #26
Degu	MODERN SPECIES	250	ENSODEG00000018835	ENSODEG00000002534	FAT3 (ENSODEG00000002606) #9	MTNR1B (ENSODEG00000002125) #11	SLC36A4 (ENSODEG00000002145) #12	DEUP1 (ENSODEG00000002198) #13	SMCO4 (ENSODEG00000018804) #14	TAF1D (ENSODEG00000002225) #16	C11orf54 (ENSODEG00000002265) #17	MED17 (ENSODEG00000002353) #18	VSTM5 (ENSODEG00000002406) #19	ENSODEG00000002422	HEPHL1 (ENSODEG00000002492) #20	ENSODEG00000000644 #21	ENSODEG00000000623	IZUMO1R (ENSODEG00000000695) #22	GPR83 (ENSODEG00000000724) #24	ENSODEG00000001221 #26	ENSODEG00000001233
Guinea pig	MODERN SPECIES	40	FOLH1 (ENSCPOG00000003797) ##7	NAALAD2 (ENSCPOG00000038440) #7	CHORDC1 (ENSCPOG00000022614) #8	ENSCPOG00000010626 #9	MTNR1B (ENSCPOG00000010637) #11	SLC36A4 (ENSCPOG00000036098) #12	DEUP1 (ENSCPOG00000011016) #13	SMCO4 (ENSCPOG00000032286) #14	CEP295 (ENSCPOG00000032006) #15	TAF1D (ENSCPOG00000002426) #16	C11orf54 (ENSCPOG00000014146) #17	MED17 (ENSCPOG00000014149) #18	VSTM5 (ENSCPOG00000024881) #19	HEPHL1 (ENSCPOG00000004098) #20	PANX1 (ENSCPOG00000039148) #21	IZUMO1R (ENSCPOG00000011657) #22	GPR83 (ENSCPOG00000039200) #24	MRE11 (ENSCPOG00000014563) #25	ANKRD49 (ENSCPOG00000030391) #26	C11orf97 (ENSCPOG00000031459)	FUT4 (ENSCPOG00000000069)	PIWIL4 (ENSCPOG00000000070)	AMOTL1 (ENSCPOG00000006241)	CWC15 (ENSCPOG00000006249)	KDM4D (ENSCPOG00000006256)
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000050821	FAT3 (ENSHGLG00000010388) #9	ENSHGLG00000044735 #11	SLC36A4 (ENSHGLG00000044885) #12	ENSHGLG00000020910	ENSHGLG00000014481 #15	C11orf54 (ENSHGLG00000012597) #17	TAF1D (ENSHGLG00000008795) #16	MED17 (ENSHGLG00000006191) #18	VSTM5 (ENSHGLG00000007424) #19	ENSHGLG00000048701	ENSHGLG00000049421	HEPHL1 (ENSHGLG00000005416) #20	PANX1 (ENSHGLG00000007682) #21	ENSHGLG00000050118	IZUMO1R (ENSHGLG00000008985) #22	ENSHGLG00000019637	GPR83 (ENSHGLG00000018711) #24	MRE11A (ENSHGLG00000015754) #25	ANKRD49 (ENSHGLG00000014039) #26	ENSHGLG00000014136	FUT4 (ENSHGLG00000005608)	ENSHGLG00000005671	PIWIL4 (ENSHGLG00000007416)	ENSHGLG00000008729	AMOTL1 (ENSHGLG00000010959)	ENSHGLG00000049265	ENSHGLG00000035638	ENSHGLG00000032452	ENSHGLG00000043269	ENSHGLG00000046281 #14