Murinae	ANCESTRAL SPECIES	3	ENSGT00940000163858 #7	ENSGT01030000234598.b.a.b.k.b #8	ENSGT00940000154174 #9	ENSGT00940000154981 #10	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #23	ENSGT00390000017288 #24	ENSGT00390000003919 #25	ENSGT00520000058823 #26	ENSGT00940000162506 #27	ENSGT00950000183200.A.a.a #28	ENSGT00940000160158 #29	ENSGT00390000012084 #30	ENSGT00940000162152 #31	ENSGT01030000234592.B #32	ENSGT00950000183168.A #33	ENSGT00940000159074 #34	ENSGT00530000063695.a #35	ENSGT00940000153669.a #36	ENSGT00950000183201.a #37
Mus	ANCESTRAL SPECIES	4	ENSGT00940000163858 #7	ENSGT01030000234598.b.a.b.k.b #8	ENSGT00940000154174 #9	ENSGT00940000154981 #10	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #23	ENSGT00390000017288 #24	ENSGT00390000003919 #25	ENSGT00520000058823 #26	ENSGT00940000162506 #27	ENSGT00950000183200.A.a.a #28	ENSGT00940000160158 #29	ENSGT00390000012084 #30	ENSGT00940000162152 #31	ENSGT01030000234592.B #32	ENSGT00950000183168.A #33	ENSGT00940000159074 #34	ENSGT00530000063695.a #35	ENSGT00940000153669.a #36	ENSGT00950000183201.a #37
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000163858 #7	ENSGT01030000234598.b.a.b.k.b #8	ENSGT00940000154174 #9	ENSGT00940000154981 #10	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #23	ENSGT00390000017288 #24	ENSGT00390000003919 #25	ENSGT00520000058823 #26	ENSGT00940000162506 #27	ENSGT00950000183200.A.a.a #28	ENSGT00940000160158 #29	ENSGT00390000012084 #30	ENSGT00940000162152 #31	ENSGT01030000234592.B #32	ENSGT00950000183168.A #33	ENSGT00940000159074 #34	ENSGT00530000063695.a #35	ENSGT00940000153669.a #36	ENSGT00950000183201.a #37
Ryukyu mouse	MODERN SPECIES	18	Ubtfl1 (MGP_CAROLIEiJ_G0031805) #7	Naalad2 (MGP_CAROLIEiJ_G0031804) #8	Chordc1 (MGP_CAROLIEiJ_G0031803) #9	Fat3 (MGP_CAROLIEiJ_G0031802) #10	Mtnr1b (MGP_CAROLIEiJ_G0031801) #11	Slc36a4 (MGP_CAROLIEiJ_G0031800) #12	Deup1 (MGP_CAROLIEiJ_G0031799) #13	Smco4 (MGP_CAROLIEiJ_G0031798) #14	Cep295 (MGP_CAROLIEiJ_G0031797) #15	Taf1d (MGP_CAROLIEiJ_G0031796) #16	4931406C07Rik (MGP_CAROLIEiJ_G0031795) #17	Med17 (MGP_CAROLIEiJ_G0031794) #18	Vstm5 (MGP_CAROLIEiJ_G0031793) #19	Hephl1 (MGP_CAROLIEiJ_G0031792) #20	Panx1 (MGP_CAROLIEiJ_G0031791) #21	Izumo1r (MGP_CAROLIEiJ_G0031790) #22	Gpr83 (MGP_CAROLIEiJ_G0031789) #23	Mre11a (MGP_CAROLIEiJ_G0031788) #24	Ankrd49 (MGP_CAROLIEiJ_G0031787) #25	1700012B09Rik (MGP_CAROLIEiJ_G0031786) #26	Fut4 (MGP_CAROLIEiJ_G0031785) #27	Piwil4 (MGP_CAROLIEiJ_G0031784) #28	Amotl1 (MGP_CAROLIEiJ_G0031783) #29	Cwc15 (MGP_CAROLIEiJ_G0031782) #30	Kdm4d (MGP_CAROLIEiJ_G0031781) #31	Endod1 (MGP_CAROLIEiJ_G0031780) #32	Sesn3 (MGP_CAROLIEiJ_G0031779) #33	Fam76b (MGP_CAROLIEiJ_G0031778) #34	Cep57 (MGP_CAROLIEiJ_G0031777) #35	Mtmr2 (MGP_CAROLIEiJ_G0031776) #36	Maml2 (MGP_CAROLIEiJ_G0031775) #37
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000163858 #7	ENSGT01030000234598.b.a.b.k.b #8	ENSGT00940000154174 #9	ENSGT00940000154981 #10	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #23	ENSGT00390000017288 #24	ENSGT00390000003919 #25	ENSGT00520000058823 #26	ENSGT00940000162506 #27	ENSGT00950000183200.A.a.a #28	ENSGT00940000160158 #29	ENSGT00390000012084 #30	ENSGT00940000162152 #31	ENSGT01030000234592.B #32	ENSGT00950000183168.A #33	ENSGT00940000159074 #34	ENSGT00530000063695.a #35	ENSGT00940000153669.a #36	ENSGT00950000183201.a #37
Mouse	MODERN SPECIES	18	Ubtfl1 (ENSMUSG00000074502) #7	Naalad2 (ENSMUSG00000043943) #8	Chordc1 (ENSMUSG00000001774) #9	Fat3 (ENSMUSG00000074505) #10	Mtnr1b (ENSMUSG00000050901) #11	Slc36a4 (ENSMUSG00000043885) #12	Deup1 (ENSMUSG00000039977) #13	Smco4 (ENSMUSG00000058173) #14	Cep295 (ENSMUSG00000046111) #15	Taf1d (ENSMUSG00000031939) #16	4931406C07Rik (ENSMUSG00000031938) #17	Med17 (ENSMUSG00000031935) #18	Vstm5 (ENSMUSG00000031937) #19	Hephl1 (ENSMUSG00000031936) #20	Panx1 (ENSMUSG00000031934) #21	Izumo1r (ENSMUSG00000031933) #22	Gpr83 (ENSMUSG00000031932) #23	Mre11a (ENSMUSG00000031928) #24	Ankrd49 (ENSMUSG00000031931) #25	1700012B09Rik (ENSMUSG00000031927) #26	Fut4 (ENSMUSG00000049307) #27	Piwil4 (ENSMUSG00000036912) #28	Amotl1 (ENSMUSG00000013076) #29	Cwc15 (ENSMUSG00000004096) #30	Kdm4d (ENSMUSG00000053914) #31	Endod1 (ENSMUSG00000037419) #32	Sesn3 (ENSMUSG00000032009) #33	Fam76b (ENSMUSG00000037808) #34	Cep57 (ENSMUSG00000031922) #35	Mtmr2 (ENSMUSG00000031918) #36	Gm17571 (ENSMUSG00000090592)
Mus_C	ANCESTRAL SPECIES	8	ENSGT01030000234598.b.a.b.k.b #8	ENSGT00940000154174 #9	ENSGT00940000153052.c.b.b.b.d.a.a	ENSGT00940000154981 #10	ENSGT00940000162341 #11	ENSGT00940000160117 #12	ENSGT00940000153190.B.a #13	ENSGT00390000015987 #14	ENSGT00940000153123.A.e #15	ENSGT00390000009061 #16	ENSGT00390000017214 #17	ENSGT00390000011810 #18	ENSGT01100000263551.b.a.b #19	ENSGT00940000157994 #20	ENSGT00940000153972.A #21	ENSGT00950000183144.A.j #22	ENSGT00940000154336.d #23	ENSGT00390000017288 #24	ENSGT00390000003919 #25	ENSGT00520000058823 #26	ENSGT00940000162506 #27	ENSGT00950000183200.A.a.a #28	ENSGT00940000160158 #29	ENSGT00390000012084 #30	ENSGT00940000162152 #31	ENSGT01030000234592.B #32	ENSGT00950000183168.A #33	ENSGT00940000159074 #34	ENSGT00530000063695.a #35	ENSGT00940000153669.a #36	ENSGT00950000183201.a #37
spretus	MODERN SPECIES	18	Ubtfl1 (MGP_SPRETEiJ_G0032925) #7	Naalad2 (MGP_SPRETEiJ_G0032924) #8	Chordc1 (MGP_SPRETEiJ_G0032923) #9	MGP_SPRETEiJ_G0032922	Fat3 (MGP_SPRETEiJ_G0032921) #10	MGP_SPRETEiJ_G0032920 #11	Slc36a4 (MGP_SPRETEiJ_G0032919) #12	Deup1 (MGP_SPRETEiJ_G0032918) #13	Smco4 (MGP_SPRETEiJ_G0032917) #14	Cep295 (MGP_SPRETEiJ_G0032916) #15	4931406C07Rik (MGP_SPRETEiJ_G0032915) #17	Med17 (MGP_SPRETEiJ_G0032914) #18	Vstm5 (MGP_SPRETEiJ_G0032913) #19	Hephl1 (MGP_SPRETEiJ_G0032912) #20	Panx1 (MGP_SPRETEiJ_G0032911) #21	Izumo1r (MGP_SPRETEiJ_G0032910) #22	MGP_SPRETEiJ_G0032909 #23	Mre11a (MGP_SPRETEiJ_G0032908) #24	Ankrd49 (MGP_SPRETEiJ_G0032907) #25	1700012B09Rik (MGP_SPRETEiJ_G0032906) #26	Fut4 (MGP_SPRETEiJ_G0032905) #27	Piwil4 (MGP_SPRETEiJ_G0032904) #28	Amotl1 (MGP_SPRETEiJ_G0032903) #29	Cwc15 (MGP_SPRETEiJ_G0032902) #30	Kdm4d (MGP_SPRETEiJ_G0032901) #31	Endod1 (MGP_SPRETEiJ_G0032900) #32	Sesn3 (MGP_SPRETEiJ_G0032899) #33	Fam76b (MGP_SPRETEiJ_G0032898) #34	Cep57 (MGP_SPRETEiJ_G0032897) #35	Mtmr2 (MGP_SPRETEiJ_G0032896) #36	Maml2 (MGP_SPRETEiJ_G0032895) #37
Steppe mouse	MODERN SPECIES	3318	ENSMSIG00000015167	ENSMSIG00000015180	ENSMSIG00000015183	Fat3 (ENSMSIG00000015207) #10	Mtnr1b (ENSMSIG00000015621) #11	Slc36a4 (ENSMSIG00000015623) #12	Deup1 (ENSMSIG00000015751) #13	ENSMSIG00000015880 #14	Cep295 (ENSMSIG00000015917) #15	Taf1d (ENSMSIG00000016165) #16	4931406C07Rik (ENSMSIG00000016204) #17	Med17 (ENSMSIG00000016253) #18	Vstm5 (ENSMSIG00000016281) #19	Hephl1 (ENSMSIG00000016306) #20	Panx1 (ENSMSIG00000016343) #21	Izumo1r (ENSMSIG00000016359) #22	Gpr83 (ENSMSIG00000016567) #23	ENSMSIG00000016588	Mre11a (ENSMSIG00000016606) #24	Ankrd49 (ENSMSIG00000016701) #25	1700012B09Rik (ENSMSIG00000016716) #26	Fut4 (ENSMSIG00000016738) #27	Piwil4 (ENSMSIG00000016745) #28	Amotl1 (ENSMSIG00000016862) #29	Cwc15 (ENSMSIG00000017024) #30	ENSMSIG00000017048 #31	Sesn3 (ENSMSIG00000017068) #33
Shrew mouse	MODERN SPECIES	1	Ubtfl1 (MGP_PahariEiJ_G0014681) #7	MGP_PahariEiJ_G0014680	Chordc1 (MGP_PahariEiJ_G0014679) #9	Fat3 (MGP_PahariEiJ_G0014678) #10	Mtnr1b (MGP_PahariEiJ_G0014677) #11	Slc36a4 (MGP_PahariEiJ_G0014676) #12	Deup1 (MGP_PahariEiJ_G0014675) #13	Smco4 (MGP_PahariEiJ_G0014674) #14	Cep295 (MGP_PahariEiJ_G0014673) #15	MGP_PahariEiJ_G0014672 #16	4931406C07Rik (MGP_PahariEiJ_G0014671) #17	Med17 (MGP_PahariEiJ_G0014670) #18	Vstm5 (MGP_PahariEiJ_G0014669) #19	MGP_PahariEiJ_G0014668 #20	Panx1 (MGP_PahariEiJ_G0014667) #21	Izumo1r (MGP_PahariEiJ_G0014666) #22	Gpr83 (MGP_PahariEiJ_G0014665) #23	Mre11a (MGP_PahariEiJ_G0014664) #24	Ankrd49 (MGP_PahariEiJ_G0014663) #25	1700012B09Rik (MGP_PahariEiJ_G0014662) #26	Fut4 (MGP_PahariEiJ_G0014661) #27	Piwil4 (MGP_PahariEiJ_G0014660) #28	Amotl1 (MGP_PahariEiJ_G0014659) #29	Cwc15 (MGP_PahariEiJ_G0014658) #30	Kdm4d (MGP_PahariEiJ_G0014657) #31	Endod1 (MGP_PahariEiJ_G0014656) #32	Sesn3 (MGP_PahariEiJ_G0014655) #33	Fam76b (MGP_PahariEiJ_G0014654) #34	Cep57 (MGP_PahariEiJ_G0014653) #35	Mtmr2 (MGP_PahariEiJ_G0014652) #36	Maml2 (MGP_PahariEiJ_G0014651) #37
Rat	MODERN SPECIES	18	Nek2l1 (ENSRNOG00000012119)	LOC689840 (ENSRNOG00000031522)	Fat3 (ENSRNOG00000011585) #10	Mtnr1b (ENSRNOG00000008972) #11	Slc36a4 (ENSRNOG00000011455) #12	Deup1 (ENSRNOG00000061247) #13	Smco4 (ENSRNOG00000011162) #14	Cep295 (ENSRNOG00000010999) #15	Taf1d (ENSRNOG00000010921) #16	C8h11orf54 (ENSRNOG00000010887) #17	Med17 (ENSRNOG00000010496) #18	Vstm5 (ENSRNOG00000010480) #19	ENSRNOG00000062992	Hephl1 (ENSRNOG00000056092) #20	Panx1 (ENSRNOG00000010060) #21	Izumo1r (ENSRNOG00000019894) #22	Gpr83 (ENSRNOG00000030318) #23	Mre11 (ENSRNOG00000009506) #24	Ankrd49 (ENSRNOG00000009233) #25	C8h11orf97 (ENSRNOG00000009203) #26	Fut4 (ENSRNOG00000009157) #27	Piwil4 (ENSRNOG00000009043) #28	Amotl1 (ENSRNOG00000008990) #29	Cwc15 (ENSRNOG00000008490) #30	LOC108348070 (ENSRNOG00000045905) #31	Endod1 (ENSRNOG00000024757) #32	Sesn3 (ENSRNOG00000008173) #33	Fam76b (ENSRNOG00000024863) #34	Cep57 (ENSRNOG00000006792) #35	Mtmr2 (ENSRNOG00000005923) #36	Maml2 (ENSRNOG00000005879) #37