Euteleostomi	ANCESTRAL SPECIES		ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00940000177623	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Sarcopterygii	ANCESTRAL SPECIES	2	ENSGT00940000157221	ENSGT00390000000214.a.b	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Tetrapoda	ANCESTRAL SPECIES	3	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00940000177623	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Amniota	ANCESTRAL SPECIES	2	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00940000177623	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Mammalia	ANCESTRAL SPECIES	1	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Theria	ANCESTRAL SPECIES	6	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Eutheria	ANCESTRAL SPECIES	2	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Boreoeutheria	ANCESTRAL SPECIES	8	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Euarchontoglires	ANCESTRAL SPECIES	9	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Primates	ANCESTRAL SPECIES	10	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Haplorrhini	ANCESTRAL SPECIES	23	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Simiiformes	ANCESTRAL SPECIES	10	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Platyrrhini	ANCESTRAL SPECIES	5	ENSGT00390000008128.c.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430.c	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Cebidae	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.c	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Cebidae_a	ANCESTRAL SPECIES	34	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985.c	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.c	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Capuchin	MODERN SPECIES	422																PPARGC1A (ENSCCAG00000024681) #22	GBA3 (ENSCCAG00000033650) #23	ADGRA3 (ENSCCAG00000034466) #24
Bolivian squirrel monkey	MODERN SPECIES	65	TBC1D19 (ENSSBOG00000030316)	CCKAR (ENSSBOG00000028673)	RBPJ (ENSSBOG00000024531)	ENSSBOG00000022950	SEL1L3 (ENSSBOG00000031484)	SLC34A2 (ENSSBOG00000023680)	ANAPC4 (ENSSBOG00000025712)	ZCCHC4 (ENSSBOG00000020855)	PI4K2B (ENSSBOG00000030108)	SEPSECS (ENSSBOG00000023218)	LGI2 (ENSSBOG00000033943)	CCDC149 (ENSSBOG00000034478)	SOD3 (ENSSBOG00000003134)	ENSSBOG00000030054	DHX15 (ENSSBOG00000022126)	PPARGC1A (ENSSBOG00000006423) #22	GBA3 (ENSSBOG00000032739) #23	ADGRA3 (ENSSBOG00000006417) #24	ENSSBOG00000032262	ENSSBOG00000023241	KCNIP4 (ENSSBOG00000034826)	PACRGL (ENSSBOG00000024032)	SLIT2 (ENSSBOG00000017816)	ENSSBOG00000030307	LCORL (ENSSBOG00000026920)	NCAPG (ENSSBOG00000022967)	ENSSBOG00000009348	DCAF16 (ENSSBOG00000013262)	FAM184B (ENSSBOG00000030079)	MED28 (ENSSBOG00000023401)	ENSSBOG00000001223
Marmoset	MODERN SPECIES	15	CCKAR (ENSCJAG00000083281)	RBPJ (ENSCJAG00000021033)	ENSCJAG00000086596	ENSCJAG00000063163	SMIM20 (ENSCJAG00000081638)	SEL1L3 (ENSCJAG00000021061)	SLC34A2 (ENSCJAG00000013366)	ENSCJAG00000084062	ANAPC4 (ENSCJAG00000013271)	SEPSECS (ENSCJAG00000013178)	LGI2 (ENSCJAG00000042679)	CCDC149 (ENSCJAG00000013127)	SOD3 (ENSCJAG00000013121)	ENSCJAG00000087251	DHX15 (ENSCJAG00000013069)	PPARGC1A (ENSCJAG00000013024) #22	ENSCJAG00000083951	ENSCJAG00000075836	GBA3 (ENSCJAG00000013020) #23	ADGRA3 (ENSCJAG00000012977) #24	ENSCJAG00000075053	KCNIP4 (ENSCJAG00000012939)	ENSCJAG00000071426	ENSCJAG00000080968	PACRGL (ENSCJAG00000012915)	SLIT2 (ENSCJAG00000012812)	ENSCJAG00000079404	ENSCJAG00000054556	ENSCJAG00000071321	ENSCJAG00000079516	ENSCJAG00000086132
Mas night monkey	MODERN SPECIES	1274	ENSANAG00000021496	STIM2 (ENSANAG00000030101)	TBC1D19 (ENSANAG00000034488)	CCKAR (ENSANAG00000033444)	RBPJ (ENSANAG00000028890)	SMIM20 (ENSANAG00000027622)	SEL1L3 (ENSANAG00000035152)	SLC34A2 (ENSANAG00000020569)	ANAPC4 (ENSANAG00000028966)	ZCCHC4 (ENSANAG00000034646)	PI4K2B (ENSANAG00000030238)	SEPSECS (ENSANAG00000035197)	LGI2 (ENSANAG00000027724)	CCDC149 (ENSANAG00000029354)	DHX15 (ENSANAG00000020669)	PPARGC1A (ENSANAG00000035930) #22	GBA3 (ENSANAG00000033499) #23	ADGRA3 (ENSANAG00000029226) #24	KCNIP4 (ENSANAG00000020849)	PACRGL (ENSANAG00000026655)	SLIT2 (ENSANAG00000034275)	ENSANAG00000036506	LCORL (ENSANAG00000026998)	NCAPG (ENSANAG00000037426)	ENSANAG00000004148	DCAF16 (ENSANAG00000003812)	FAM184B (ENSANAG00000030525)	ENSANAG00000018015	LAP3 (ENSANAG00000026474)	CLRN2 (ENSANAG00000037120)	ENSANAG00000022597
Catarrhini	ANCESTRAL SPECIES	14	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Hominoidea	ANCESTRAL SPECIES	10	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Hominidae	ANCESTRAL SPECIES	12	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	11	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235 #24	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Homo/Pan group	ANCESTRAL SPECIES	10	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235 #24	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Pan	ANCESTRAL SPECIES	7	ENSGT00390000015965	ENSGT00940000174987	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00950000182891.a.a.b.a.b.a.s.c.a	ENSGT00940000157235 #24	ENSGT00940000158985.b	ENSGT00940000159756	ENSGT00940000158402	ENSGT01030000234946.d.a.b.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01100000263819	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Chimpanzee	MODERN SPECIES	17	STIM2 (ENSPTRG00000015971)	TBC1D19 (ENSPTRG00000015970)	CCKAR (ENSPTRG00000015969)	RBPJ (ENSPTRG00000015968)	ENSPTRG00000015967	SEL1L3 (ENSPTRG00000015966)	SLC34A2 (ENSPTRG00000015965)	ANAPC4 (ENSPTRG00000015963)	ZCCHC4 (ENSPTRG00000015962)	PI4K2B (ENSPTRG00000015960)	SEPSECS (ENSPTRG00000015959)	LGI2 (ENSPTRG00000045126)	CCDC149 (ENSPTRG00000015957)	SOD3 (ENSPTRG00000015956)	DHX15 (ENSPTRG00000015955)	PPARGC1A (ENSPTRG00000015954) #22	GBA3 (ENSPTRG00000043929) #23	ENSPTRG00000042867	ADGRA3 (ENSPTRG00000015949) #24	KCNIP4 (ENSPTRG00000015948)	PACRGL (ENSPTRG00000015945)	SLIT2 (ENSPTRG00000024331)	ENSPTRG00000050513	LCORL (ENSPTRG00000052306)	NCAPG (ENSPTRG00000015942)	ENSPTRG00000045108	DCAF16 (ENSPTRG00000051571)	FAM184B (ENSPTRG00000015940)	MED28 (ENSPTRG00000045116)	LAP3 (ENSPTRG00000015938)	CLRN2 (ENSPTRG00000050671)
Bonobo	MODERN SPECIES	17	TBC1D19 (ENSPPAG00000039764)	ENSPPAG00000027805	CCKAR (ENSPPAG00000027751)	RBPJ (ENSPPAG00000042016)	SMIM20 (ENSPPAG00000037198)	SEL1L3 (ENSPPAG00000026819)	SLC34A2 (ENSPPAG00000031554)	ANAPC4 (ENSPPAG00000040743)	ZCCHC4 (ENSPPAG00000031116)	PI4K2B (ENSPPAG00000040564)	SEPSECS (ENSPPAG00000037022)	LGI2 (ENSPPAG00000043039)	CCDC149 (ENSPPAG00000040269)	SOD3 (ENSPPAG00000022679)	DHX15 (ENSPPAG00000030385)	PPARGC1A (ENSPPAG00000034694) #22	GBA3 (ENSPPAG00000040905) #23	ENSPPAG00000011801	ADGRA3 (ENSPPAG00000035849) #24	KCNIP4 (ENSPPAG00000033844)	PACRGL (ENSPPAG00000027879)	SLIT2 (ENSPPAG00000043820)	LCORL (ENSPPAG00000039308)	NCAPG (ENSPPAG00000028077)	ENSPPAG00000023045	DCAF16 (ENSPPAG00000021334)	FAM184B (ENSPPAG00000038055)	MED28 (ENSPPAG00000034569)	LAP3 (ENSPPAG00000029619)	CLRN2 (ENSPPAG00000027659)	QDPR (ENSPPAG00000036323)
Human	MODERN SPECIES	16	STIM2 (ENSG00000109689)	TBC1D19 (ENSG00000109680)	CCKAR (ENSG00000163394)	RBPJ (ENSG00000168214)	SMIM20 (ENSG00000250317)	SEL1L3 (ENSG00000091490)	SLC34A2 (ENSG00000157765)	ANAPC4 (ENSG00000053900)	ZCCHC4 (ENSG00000168228)	PI4K2B (ENSG00000038210)	SEPSECS (ENSG00000109618)	LGI2 (ENSG00000153012)	CCDC149 (ENSG00000181982)	SOD3 (ENSG00000109610)	DHX15 (ENSG00000109606)	PPARGC1A (ENSG00000109819) #22	GBA3 (ENSG00000249948) #23	ADGRA3 (ENSG00000152990) #24	KCNIP4 (ENSG00000185774)	PACRGL (ENSG00000163138)	SLIT2 (ENSG00000145147)	LCORL (ENSG00000178177)	NCAPG (ENSG00000109805)	DCAF16 (ENSG00000163257)	FAM184B (ENSG00000047662)	MED28 (ENSG00000118579)	LAP3 (ENSG00000002549)	CLRN2 (ENSG00000249581)	QDPR (ENSG00000151552)	LDB2 (ENSG00000169744)	TAPT1 (ENSG00000169762)
Gorilla	MODERN SPECIES	17	ENSGGOG00000038446	STIM2 (ENSGGOG00000000474)	TBC1D19 (ENSGGOG00000025239)	CCKAR (ENSGGOG00000015177)	RBPJ (ENSGGOG00000004582)	ENSGGOG00000013757	SEL1L3 (ENSGGOG00000001417)	SLC34A2 (ENSGGOG00000016668)	ANAPC4 (ENSGGOG00000025631)	ZCCHC4 (ENSGGOG00000016476)	PI4K2B (ENSGGOG00000014057)	SEPSECS (ENSGGOG00000025528)	LGI2 (ENSGGOG00000023809)	CCDC149 (ENSGGOG00000010166)	DHX15 (ENSGGOG00000016819)	PPARGC1A (ENSGGOG00000009810) #22	GBA3 (ENSGGOG00000013597) #23	ENSGGOG00000026378	ADGRA3 (ENSGGOG00000026666) #24	ENSGGOG00000038375	PACRGL (ENSGGOG00000012603)	SLIT2 (ENSGGOG00000006151)	ENSGGOG00000037439	LCORL (ENSGGOG00000014894)	NCAPG (ENSGGOG00000015019)	ENSGGOG00000038365	FAM184B (ENSGGOG00000007263)	MED28 (ENSGGOG00000001114)	LAP3 (ENSGGOG00000001110)	CLRN2 (ENSGGOG00000004114)	QDPR (ENSGGOG00000004110)
Orangutan	MODERN SPECIES	17	CCKAR (ENSPPYG00000014653)	RBPJ (ENSPPYG00000014652)	SMIM20 (ENSPPYG00000014651)	SEL1L3 (ENSPPYG00000014650)	ENSPPYG00000031785	SLC34A2 (ENSPPYG00000014649)	ANAPC4 (ENSPPYG00000034769)	ZCCHC4 (ENSPPYG00000014647)	PI4K2B (ENSPPYG00000014646)	SEPSECS (ENSPPYG00000014645)	LGI2 (ENSPPYG00000039828)	CCDC149 (ENSPPYG00000014643)	SOD3 (ENSPPYG00000014642)	ENSPPYG00000036250	DHX15 (ENSPPYG00000014641)	PPARGC1A (ENSPPYG00000014640) #22	GBA3 (ENSPPYG00000014639) #23	ENSPPYG00000014638	ADGRA3 (ENSPPYG00000014637) #24	KCNIP4 (ENSPPYG00000030455)	PACRGL (ENSPPYG00000014634)	SLIT2 (ENSPPYG00000014633)	ENSPPYG00000036110	LCORL (ENSPPYG00000014631)	NCAPG (ENSPPYG00000014630)	FAM184B (ENSPPYG00000014628)	MED28 (ENSPPYG00000014627)	LAP3 (ENSPPYG00000014626)	CLRN2 (ENSPPYG00000014625)	QDPR (ENSPPYG00000014624)	LDB2 (ENSPPYG00000014623)
Gibbon	MODERN SPECIES	12	TBC1D19 (ENSNLEG00000016920)	CCKAR (ENSNLEG00000016913)	RBPJ (ENSNLEG00000016895)	ENSNLEG00000032692	ENSNLEG00000016894	SEL1L3 (ENSNLEG00000016867)	SLC34A2 (ENSNLEG00000016860)	ANAPC4 (ENSNLEG00000016831)	ZCCHC4 (ENSNLEG00000016824)	PI4K2B (ENSNLEG00000016814)	SEPSECS (ENSNLEG00000016800)	LGI2 (ENSNLEG00000016796)	CCDC149 (ENSNLEG00000016779)	SOD3 (ENSNLEG00000032570)	DHX15 (ENSNLEG00000016767)	PPARGC1A (ENSNLEG00000016760) #22	GBA3 (ENSNLEG00000016754) #23	ENSNLEG00000027847	ADGRA3 (ENSNLEG00000016741) #24	KCNIP4 (ENSNLEG00000016720)	PACRGL (ENSNLEG00000016706)	SLIT2 (ENSNLEG00000016689)	ENSNLEG00000031015	LCORL (ENSNLEG00000016684)	NCAPG (ENSNLEG00000016632)	ENSNLEG00000036017	FAM184B (ENSNLEG00000031656)	ENSNLEG00000016620	LAP3 (ENSNLEG00000016606)	CLRN2 (ENSNLEG00000016604)	QDPR (ENSNLEG00000016583)
Cercopithecidae	ANCESTRAL SPECIES	10	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Rhinopithecus	ANCESTRAL SPECIES	355							ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Golden snub-nosed monkey	MODERN SPECIES	1053							SLC34A2 (ENSRROG00000031171)	ANAPC4 (ENSRROG00000032130)	ZCCHC4 (ENSRROG00000002974)	PI4K2B (ENSRROG00000028941)	SEPSECS (ENSRROG00000022363)	LGI2 (ENSRROG00000043141)	CCDC149 (ENSRROG00000040964)	SOD3 (ENSRROG00000020067)	DHX15 (ENSRROG00000039130)	PPARGC1A (ENSRROG00000010419) #22	ENSRROG00000028618
Black snub-nosed monkey	MODERN SPECIES	194							SLC34A2 (ENSRBIG00000020575)	ANAPC4 (ENSRBIG00000043872)	ZCCHC4 (ENSRBIG00000034117)	ENSRBIG00000038457	PI4K2B (ENSRBIG00000033543)	SEPSECS (ENSRBIG00000030491)	LGI2 (ENSRBIG00000027385)	CCDC149 (ENSRBIG00000029170)	DHX15 (ENSRBIG00000037326)	PPARGC1A (ENSRBIG00000032333) #22	ENSRBIG00000026496	GBA3 (ENSRBIG00000036546) #23	ENSRBIG00000026616	ADGRA3 (ENSRBIG00000029625) #24	KCNIP4 (ENSRBIG00000028034)	PACRGL (ENSRBIG00000037932)	SLIT2 (ENSRBIG00000031606)	TRPV6 (ENSRBIG00000040293)	EPHB6 (ENSRBIG00000044488)	ENSRBIG00000026887	ENSRBIG00000042167	ENSRBIG00000026151	ENSRBIG00000008812	ENSRBIG00000013946	ENSRBIG00000019362
Cercopithecinae	ANCESTRAL SPECIES	14	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b
Vervet Monkey	MODERN SPECIES	19	ENSCSAG00000016720	TBC1D19 (ENSCSAG00000016710)	CCKAR (ENSCSAG00000016683)	RBPJ (ENSCSAG00000016678)	ENSCSAG00000016669	SEL1L3 (ENSCSAG00000016666)	SLC34A2 (ENSCSAG00000016651)	ANAPC4 (ENSCSAG00000016642)	ZCCHC4 (ENSCSAG00000016633)	PI4K2B (ENSCSAG00000016627)	SEPSECS (ENSCSAG00000016622)	LGI2 (ENSCSAG00000016614)	CCDC149 (ENSCSAG00000016607)	SOD3 (ENSCSAG00000019694)	DHX15 (ENSCSAG00000016601)	PPARGC1A (ENSCSAG00000016575) #22	GBA3 (ENSCSAG00000016567) #23	ADGRA3 (ENSCSAG00000016562) #24	KCNIP4 (ENSCSAG00000016556)	PACRGL (ENSCSAG00000016548)	SLIT2 (ENSCSAG00000016541)	ENSCSAG00000016527	ENSCSAG00000016522	LCORL (ENSCSAG00000016518)	NCAPG (ENSCSAG00000016516)	DCAF16 (ENSCSAG00000019695)	FAM184B (ENSCSAG00000016499)	MED28 (ENSCSAG00000016495)	LAP3 (ENSCSAG00000016492)	CLRN2 (ENSCSAG00000016486)	QDPR (ENSCSAG00000016485)
Cercopithecinae_a	ANCESTRAL SPECIES	13	ENSGT00390000005197.a	ENSGT00390000002398.j	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000002398.i.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b
Cercopithecinae_b	ANCESTRAL SPECIES	6	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000002398.j	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000003682.ib.a.b.f.b.a.b
Olive baboon	MODERN SPECIES	13	ENSPANG00000041131	SLC34A2 (ENSPANG00000043751)	ENSPANG00000046005	ENSPANG00000037863	ANAPC4 (ENSPANG00000019352)	ZCCHC4 (ENSPANG00000013373)	ENSPANG00000008337	PI4K2B (ENSPANG00000024999)	SEPSECS (ENSPANG00000021177)	ENSPANG00000050688	LGI2 (ENSPANG00000016910)	CCDC149 (ENSPANG00000020855)	SOD3 (ENSPANG00000044825)	ENSPANG00000042441	DHX15 (ENSPANG00000020685)	PPARGC1A (ENSPANG00000005420) #22	GBA3 (ENSPANG00000007746) #23	ADGRA3 (ENSPANG00000008144) #24	KCNIP4 (ENSPANG00000001124)	ENSPANG00000046365	PACRGL (ENSPANG00000001123)	SLIT2 (ENSPANG00000007747)	ENSPANG00000044021	LCORL (ENSPANG00000024022)	NCAPG (ENSPANG00000000938)	DCAF16 (ENSPANG00000004496)	FAM184B (ENSPANG00000011425)	MED28 (ENSPANG00000007793)	LAP3 (ENSPANG00000005671)	CLRN2 (ENSPANG00000018188)	QDPR (ENSPANG00000010254)
Cercopithecinae_d	ANCESTRAL SPECIES	91	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.j	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Sooty mangabey	MODERN SPECIES	551	TBC1D19 (ENSCATG00000009189)	CCKAR (ENSCATG00000038819)	RBPJ (ENSCATG00000044181)	ENSCATG00000032458	SEL1L3 (ENSCATG00000038183)	SLC34A2 (ENSCATG00000029842)	ANAPC4 (ENSCATG00000035985)	ZCCHC4 (ENSCATG00000028628)	PI4K2B (ENSCATG00000015768)	SEPSECS (ENSCATG00000041245)	LGI2 (ENSCATG00000043883)	CCDC149 (ENSCATG00000037847)	SOD3 (ENSCATG00000021168)	DHX15 (ENSCATG00000000715)	ENSCATG00000022340	PPARGC1A (ENSCATG00000032575) #22	GBA3 (ENSCATG00000042364) #23	ADGRA3 (ENSCATG00000042545) #24	KCNIP4 (ENSCATG00000031858)	PACRGL (ENSCATG00000043616)	SLIT2 (ENSCATG00000044093)	LCORL (ENSCATG00000032265)	NCAPG (ENSCATG00000032636)	DCAF16 (ENSCATG00000014975)	ENSCATG00000016096	FAM184B (ENSCATG00000040065)	MED28 (ENSCATG00000030546)	LAP3 (ENSCATG00000040965)	CLRN2 (ENSCATG00000032386)	QDPR (ENSCATG00000029669)	LDB2 (ENSCATG00000019886)
Drill	MODERN SPECIES	1063													CCDC149 (ENSMLEG00000031412)	DHX15 (ENSMLEG00000032462)	ENSMLEG00000027556	PPARGC1A (ENSMLEG00000034233) #22	GBA3 (ENSMLEG00000030270) #23	ENSMLEG00000037885	ADGRA3 (ENSMLEG00000041303) #24	ENSMLEG00000026837	ENSMLEG00000027467	ENSMLEG00000027749	ENSMLEG00000002968
Macaca	ANCESTRAL SPECIES	25	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000014814.a.b.a.b.b	ENSGT00390000002398.i.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT01100000263819	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Pig-tailed macaque	MODERN SPECIES	141	CCKAR (ENSMNEG00000038424)	RBPJ (ENSMNEG00000037915)	ENSMNEG00000027453	ENSMNEG00000045287	SEL1L3 (ENSMNEG00000044018)	SLC34A2 (ENSMNEG00000033278)	ANAPC4 (ENSMNEG00000044256)	ZCCHC4 (ENSMNEG00000027221)	PI4K2B (ENSMNEG00000010678)	SEPSECS (ENSMNEG00000041117)	LGI2 (ENSMNEG00000015411)	CCDC149 (ENSMNEG00000034296)	ENSMNEG00000005920	DHX15 (ENSMNEG00000035145)	ENSMNEG00000013564	PPARGC1A (ENSMNEG00000028682) #22	GBA3 (ENSMNEG00000038431) #23	ADGRA3 (ENSMNEG00000030797) #24	KCNIP4 (ENSMNEG00000031720)	PACRGL (ENSMNEG00000038893)	SLIT2 (ENSMNEG00000043095)	LCORL (ENSMNEG00000043804)	NCAPG (ENSMNEG00000039630)	DCAF16 (ENSMNEG00000024029)	ENSMNEG00000026854	FAM184B (ENSMNEG00000006055)	MED28 (ENSMNEG00000037815)	LAP3 (ENSMNEG00000044815)	CLRN2 (ENSMNEG00000045042)	QDPR (ENSMNEG00000033228)	LDB2 (ENSMNEG00000036183)
Macaca_a	ANCESTRAL SPECIES	12	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.i.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT01100000263493.a.b.a.a.b.a.a.b.b.b.a.b.a.a.a.a.a.b	ENSGT00940000161627.a.a.a.a.b.a.a.b.a.a.a.a.a.a.a.a.a.b.a.b.b.a	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B.k	ENSGT00940000163244.d.b.a.b.a.a.d.a	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Rhesus	MODERN SPECIES	15	RBPJ (ENSMMUG00000015828)	ENSMMUG00000006680	SEL1L3 (ENSMMUG00000020349)	SLC34A2 (ENSMMUG00000021135)	ENSMMUG00000049554	ENSMMUG00000053638	ANAPC4 (ENSMMUG00000004458)	PI4K2B (ENSMMUG00000003629)	SEPSECS (ENSMMUG00000019784)	LGI2 (ENSMMUG00000060440)	ENSMMUG00000052018	ENSMMUG00000062929	CCDC149 (ENSMMUG00000004785)	SOD3 (ENSMMUG00000002612)	DHX15 (ENSMMUG00000009637)	PPARGC1A (ENSMMUG00000001844) #22	GBA3 (ENSMMUG00000005569) #23	ADGRA3 (ENSMMUG00000019963) #24	ENSMMUG00000056216	ENSMMUG00000053542	ENSMMUG00000056032	KCNIP4 (ENSMMUG00000030380)	PACRGL (ENSMMUG00000017670)	SLIT2 (ENSMMUG00000002614)	LCORL (ENSMMUG00000018073)	NCAPG (ENSMMUG00000018070)	DCAF16 (ENSMMUG00000056606)	FAM184B (ENSMMUG00000018067)	MED28 (ENSMMUG00000053953)	LAP3 (ENSMMUG00000005732)	ENSMMUG00000064012
Crab-eating macaque	MODERN SPECIES	15	SMIM20 (ENSMFAG00000033269)	SEL1L3 (ENSMFAG00000002093)	SLC34A2 (ENSMFAG00000020407)	ENSMFAG00000049099	ENSMFAG00000065080	ANAPC4 (ENSMFAG00000037891)	ZCCHC4 (ENSMFAG00000033636)	ENSMFAG00000056821	PI4K2B (ENSMFAG00000033102)	SEPSECS (ENSMFAG00000003516)	LGI2 (ENSMFAG00000036970)	CCDC149 (ENSMFAG00000042580)	ENSMFAG00000055313	SOD3 (ENSMFAG00000020365)	DHX15 (ENSMFAG00000003532)	PPARGC1A (ENSMFAG00000000534) #22	GBA3 (ENSMFAG00000003358) #23	ADGRA3 (ENSMFAG00000030955) #24	ENSMFAG00000054483	ENSMFAG00000056830	ENSMFAG00000065325	ENSMFAG00000065584	ENSMFAG00000049773	ENSMFAG00000047189	KCNIP4 (ENSMFAG00000042661)	PACRGL (ENSMFAG00000029845)	SLIT2 (ENSMFAG00000000096)	ENSMFAG00000054658	LCORL (ENSMFAG00000043664)	NCAPG (ENSMFAG00000000798)	DCAF16 (ENSMFAG00000029339)
Tarsier	MODERN SPECIES	3414																PPARGC1A (ENSTSYG00000010439) #22
Strepsirrhini	ANCESTRAL SPECIES	46	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Lemuriformes	ANCESTRAL SPECIES	62	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062
Mouse lemur	MODERN SPECIES	26	TBC1D19 (ENSMICG00000015879)	CCKAR (ENSMICG00000016023)	RBPJ (ENSMICG00000016014)	SMIM20 (ENSMICG00000017222)	SEL1L3 (ENSMICG00000017216)	SLC34A2 (ENSMICG00000045359)	ENSMICG00000033125	ANAPC4 (ENSMICG00000017188)	ZCCHC4 (ENSMICG00000017179)	PI4K2B (ENSMICG00000017176)	SEPSECS (ENSMICG00000028863)	LGI2 (ENSMICG00000002206)	CCDC149 (ENSMICG00000017475)	DHX15 (ENSMICG00000015414)	ENSMICG00000045337	PPARGC1A (ENSMICG00000015390) #22	GBA3 (ENSMICG00000017466) #23	ADGRA3 (ENSMICG00000003022) #24	ENSMICG00000009425	KCNIP4 (ENSMICG00000035356)	PACRGL (ENSMICG00000005651)	SLIT2 (ENSMICG00000005622)	ENSMICG00000027479	LCORL (ENSMICG00000034656)	NCAPG (ENSMICG00000006804)	DCAF16 (ENSMICG00000042496)	FAM184B (ENSMICG00000006794)	MED28 (ENSMICG00000035340)	ENSMICG00000006788	CLRN2 (ENSMICG00000039157)	QDPR (ENSMICG00000000596)
Lemuriformes_a	ANCESTRAL SPECIES	192	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24
Greater bamboo lemur	MODERN SPECIES	685						SLC34A2 (ENSPSMG00000020812)	ANAPC4 (ENSPSMG00000020764)	ZCCHC4 (ENSPSMG00000020716)	PI4K2B (ENSPSMG00000020669)	ENSPSMG00000020644	SEPSECS (ENSPSMG00000020631)	LGI2 (ENSPSMG00000020605)	CCDC149 (ENSPSMG00000020571)	SOD3 (ENSPSMG00000020541)	DHX15 (ENSPSMG00000020496)	PPARGC1A (ENSPSMG00000020422) #22	GBA3 (ENSPSMG00000020313) #23	ADGRA3 (ENSPSMG00000020306) #24
Coquerels sifaka	MODERN SPECIES	979	ENSPCOG00000015580	TBC1D19 (ENSPCOG00000027578)	CCKAR (ENSPCOG00000022459)	RBPJ (ENSPCOG00000014943)	SMIM20 (ENSPCOG00000020751)	SEL1L3 (ENSPCOG00000008204)	SLC34A2 (ENSPCOG00000001661)	ANAPC4 (ENSPCOG00000019322)	ZCCHC4 (ENSPCOG00000019530)	PI4K2B (ENSPCOG00000025453)	SEPSECS (ENSPCOG00000027479)	LGI2 (ENSPCOG00000019962)	CCDC149 (ENSPCOG00000021677)	DHX15 (ENSPCOG00000016858)	ENSPCOG00000019130	PPARGC1A (ENSPCOG00000022858) #22	ENSPCOG00000013452 #23	ADGRA3 (ENSPCOG00000026249) #24
Bushbaby	MODERN SPECIES	184	TBC1D19 (ENSOGAG00000008054)	CCKAR (ENSOGAG00000028711)	RBPJ (ENSOGAG00000007913)	SEL1L3 (ENSOGAG00000006417)	SLC34A2 (ENSOGAG00000006413)	ANAPC4 (ENSOGAG00000002068)	ZCCHC4 (ENSOGAG00000002064)	PI4K2B (ENSOGAG00000029591)	ENSOGAG00000024400	ENSOGAG00000033259	SEPSECS (ENSOGAG00000008524)	LGI2 (ENSOGAG00000025923)	CCDC149 (ENSOGAG00000007602)	ENSOGAG00000029820	ENSOGAG00000007593	PPARGC1A (ENSOGAG00000014559) #22	GBA3 (ENSOGAG00000004907) #23	ENSOGAG00000034271	ADGRA3 (ENSOGAG00000012841) #24	KCNIP4 (ENSOGAG00000012838)	PACRGL (ENSOGAG00000012836)	SLIT2 (ENSOGAG00000012831)	ENSOGAG00000005593	ENSOGAG00000005585	FAM184B (ENSOGAG00000005580)	MED28 (ENSOGAG00000033835)	LAP3 (ENSOGAG00000005576)	CLRN2 (ENSOGAG00000029063)	QDPR (ENSOGAG00000013513)	ENSOGAG00000030115	LDB2 (ENSOGAG00000002455)
Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT01040000242873	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Glires	ANCESTRAL SPECIES	8	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Rodentia	ANCESTRAL SPECIES	13	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Muroidea	ANCESTRAL SPECIES	17	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062	ENSGT00390000010628
Chinese hamster chok1gshd	MODERN SPECIES	44	Cckar (ENSCGRG00001015331)	Rbpj (ENSCGRG00001016640)	ENSCGRG00001010832	Smim20 (ENSCGRG00001010352)	Sel1l3 (ENSCGRG00001023792)	Slc34a2 (ENSCGRG00001019379)	Anapc4 (ENSCGRG00001021562)	ENSCGRG00001016709	Zcchc4 (ENSCGRG00001014205)	Pi4k2b (ENSCGRG00001005696)	Sepsecs (ENSCGRG00001023389)	Lgi2 (ENSCGRG00001010617)	Ccdc149 (ENSCGRG00001001092)	Sod3 (ENSCGRG00001009531)	Dhx15 (ENSCGRG00001023527)	Ppargc1a (ENSCGRG00001015534) #22	ENSCGRG00001005713	ENSCGRG00001004741 #23	Adgra3 (ENSCGRG00001023189) #24	Kcnip4 (ENSCGRG00001018947)	5730480H06Rik (ENSCGRG00001006394)	Slit2 (ENSCGRG00001021922)	ENSCGRG00001020697	ENSCGRG00001020289	ENSCGRG00001011448	ENSCGRG00001007598	Ncapg (ENSCGRG00001013905)	Fam184b (ENSCGRG00001011119)	ENSCGRG00001021780	Lap3 (ENSCGRG00001017729)	Clrn2 (ENSCGRG00001000075)
Golden Hamster	MODERN SPECIES	632		Stim2 (ENSMAUG00000018372)	Tbc1d19 (ENSMAUG00000018698)	Cckar (ENSMAUG00000020673)	Rbpj (ENSMAUG00000020612)	Smim20 (ENSMAUG00000016115)	Sel1l3 (ENSMAUG00000009548)	Slc34a2 (ENSMAUG00000016072)	Anapc4 (ENSMAUG00000015911)	Zcchc4 (ENSMAUG00000017115)	Pi4k2b (ENSMAUG00000015492)	Sepsecs (ENSMAUG00000002352)	Lgi2 (ENSMAUG00000020219)	Ccdc149 (ENSMAUG00000001813)	Dhx15 (ENSMAUG00000011535)	Ppargc1a (ENSMAUG00000011811) #22	ENSMAUG00000006861 #23	ENSMAUG00000007935	Adgra3 (ENSMAUG00000012066) #24	ENSMAUG00000007284	Kcnip4 (ENSMAUG00000020538)	5730480H06Rik (ENSMAUG00000000592)	Slit2 (ENSMAUG00000011068)	ENSMAUG00000019848	Ncapg (ENSMAUG00000007532)	Fam184b (ENSMAUG00000021123)	ENSMAUG00000008581	Lap3 (ENSMAUG00000014239)	ENSMAUG00000013013	Ldb2 (ENSMAUG00000019898)	Tapt1 (ENSMAUG00000020047)
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Northern American deer mouse	MODERN SPECIES	1	Tbc1d19 (ENSPEMG00000010326)	Cckar (ENSPEMG00000025192)	Rbpj (ENSPEMG00000010386)	Smim20 (ENSPEMG00000030098)	Sel1l3 (ENSPEMG00000020373)	Slc34a2 (ENSPEMG00000007479)	Anapc4 (ENSPEMG00000014070)	ENSPEMG00000029080	Zcchc4 (ENSPEMG00000013522)	Pi4k2b (ENSPEMG00000007793)	Sepsecs (ENSPEMG00000006742)	Lgi2 (ENSPEMG00000011026)	Ccdc149 (ENSPEMG00000012229)	Sod3 (ENSPEMG00000028688)	Dhx15 (ENSPEMG00000012226)	Ppargc1a (ENSPEMG00000010892) #22	ENSPEMG00000009892 #23	Adgra3 (ENSPEMG00000017979) #24	ENSPEMG00000025724	Kcnip4 (ENSPEMG00000000713)	5730480H06Rik (ENSPEMG00000015581)	Slit2 (ENSPEMG00000001202)	ENSPEMG00000021270	Ncapg (ENSPEMG00000020612)	Fam184b (ENSPEMG00000021704)	ENSPEMG00000030352	Lap3 (ENSPEMG00000020769)	Clrn2 (ENSPEMG00000020731)	Qdpr (ENSPEMG00000020868)	Ldb2 (ENSPEMG00000020695)	ENSPEMG00000001976
Prairie vole	MODERN SPECIES	88												Lgi2 (ENSMOCG00000003214)	Ccdc149 (ENSMOCG00000022653)	Sod3 (ENSMOCG00000010088)	Dhx15 (ENSMOCG00000003474)	Ppargc1a (ENSMOCG00000008765) #22	ENSMOCG00000016793 #23	Adgra3 (ENSMOCG00000015234) #24	Kcnip4 (ENSMOCG00000010621)	5730480H06Rik (ENSMOCG00000020867)	Slit2 (ENSMOCG00000012614)	ENSMOCG00000020963	ENSMOCG00000004853	ENSMOCG00000006778	Ncapg (ENSMOCG00000016519)	Fam184b (ENSMOCG00000006017)	Med28 (ENSMOCG00000021857)	Lap3 (ENSMOCG00000018206)	Clrn2 (ENSMOCG00000000341)	Qdpr (ENSMOCG00000020517)	Ldb2 (ENSMOCG00000000590)
Murinae	ANCESTRAL SPECIES	12	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT01100000263511.b.a.b.a.a	ENSGT01100000263543.a	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Mus	ANCESTRAL SPECIES	14	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.b
Mus_A	ANCESTRAL SPECIES	6	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Mus_B	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Mouse	MODERN SPECIES	14	Stim2 (ENSMUSG00000039156)	Tbc1d19 (ENSMUSG00000039178)	Cckar (ENSMUSG00000029193)	Rbpj (ENSMUSG00000039191)	Smim20 (ENSMUSG00000061461)	Sel1l3 (ENSMUSG00000029189)	Slc34a2 (ENSMUSG00000029188)	Anapc4 (ENSMUSG00000029176)	Zcchc4 (ENSMUSG00000029179)	Pi4k2b (ENSMUSG00000029186)	Sepsecs (ENSMUSG00000029173)	Lgi2 (ENSMUSG00000039252)	Ccdc149 (ENSMUSG00000045790)	Sod3 (ENSMUSG00000072941)	Dhx15 (ENSMUSG00000029169)	Ppargc1a (ENSMUSG00000029167) #22	Adgra3 (ENSMUSG00000029090) #24	Kcnip4 (ENSMUSG00000029088)	5730480H06Rik (ENSMUSG00000029089)	Slit2 (ENSMUSG00000031558)	Lcorl (ENSMUSG00000015882)	Ncapg (ENSMUSG00000015880)	Fam184b (ENSMUSG00000015879)	Med28 (ENSMUSG00000015804)	Lap3 (ENSMUSG00000039682)	Clrn2 (ENSMUSG00000049530)	Qdpr (ENSMUSG00000015806)	Ldb2 (ENSMUSG00000039706)	Tapt1 (ENSMUSG00000046985)	Prom1 (ENSMUSG00000029086)	Fgfbp1 (ENSMUSG00000048373)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Steppe mouse	MODERN SPECIES	2887																Ppargc1a (ENSMSIG00000019989) #22	ENSMSIG00000019964
spretus	MODERN SPECIES	14	Stim2 (MGP_SPRETEiJ_G0028223)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Cckar (MGP_SPRETEiJ_G0028221)	MGP_SPRETEiJ_G0028220	Smim20 (MGP_SPRETEiJ_G0028219)	Sel1l3 (MGP_SPRETEiJ_G0028218)	Slc34a2 (MGP_SPRETEiJ_G0028217)	Anapc4 (MGP_SPRETEiJ_G0028216)	Zcchc4 (MGP_SPRETEiJ_G0028215)	Pi4k2b (MGP_SPRETEiJ_G0028214)	Sepsecs (MGP_SPRETEiJ_G0028213)	Lgi2 (MGP_SPRETEiJ_G0028212)	Ccdc149 (MGP_SPRETEiJ_G0028211)	Sod3 (MGP_SPRETEiJ_G0028210)	Dhx15 (MGP_SPRETEiJ_G0028209)	Ppargc1a (MGP_SPRETEiJ_G0028208) #22	Adgra3 (MGP_SPRETEiJ_G0028207) #24	Kcnip4 (MGP_SPRETEiJ_G0028206)	5730480H06Rik (MGP_SPRETEiJ_G0028205)	Slit2 (MGP_SPRETEiJ_G0028204)	MGP_SPRETEiJ_G0028203	Ncapg (MGP_SPRETEiJ_G0028202)	Fam184b (MGP_SPRETEiJ_G0028201)	Med28 (MGP_SPRETEiJ_G0028200)	Lap3 (MGP_SPRETEiJ_G0028199)	Clrn2 (MGP_SPRETEiJ_G0028198)	Qdpr (MGP_SPRETEiJ_G0028197)	Ldb2 (MGP_SPRETEiJ_G0028196)	Tapt1 (MGP_SPRETEiJ_G0028195)	Prom1 (MGP_SPRETEiJ_G0028194)	Fgfbp1 (MGP_SPRETEiJ_G0028193)
Ryukyu mouse	MODERN SPECIES	14	Stim2 (MGP_CAROLIEiJ_G0027228)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Cckar (MGP_CAROLIEiJ_G0027226)	MGP_CAROLIEiJ_G0027225	Smim20 (MGP_CAROLIEiJ_G0027224)	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Slc34a2 (MGP_CAROLIEiJ_G0027222)	Anapc4 (MGP_CAROLIEiJ_G0027221)	Zcchc4 (MGP_CAROLIEiJ_G0027220)	Pi4k2b (MGP_CAROLIEiJ_G0027219)	Sepsecs (MGP_CAROLIEiJ_G0027218)	Lgi2 (MGP_CAROLIEiJ_G0027217)	Ccdc149 (MGP_CAROLIEiJ_G0027216)	Sod3 (MGP_CAROLIEiJ_G0027215)	Dhx15 (MGP_CAROLIEiJ_G0027214)	Ppargc1a (MGP_CAROLIEiJ_G0027213) #22	Adgra3 (MGP_CAROLIEiJ_G0027212) #24	MGP_CAROLIEiJ_G0027211	Kcnip4 (MGP_CAROLIEiJ_G0027210)	5730480H06Rik (MGP_CAROLIEiJ_G0027209)	Slit2 (MGP_CAROLIEiJ_G0027208)	MGP_CAROLIEiJ_G0027207	Ncapg (MGP_CAROLIEiJ_G0027206)	Fam184b (MGP_CAROLIEiJ_G0027205)	Med28 (MGP_CAROLIEiJ_G0027204)	Lap3 (MGP_CAROLIEiJ_G0027203)	Clrn2 (MGP_CAROLIEiJ_G0027202)	Qdpr (MGP_CAROLIEiJ_G0027201)	Ldb2 (MGP_CAROLIEiJ_G0027200)	Tapt1 (MGP_CAROLIEiJ_G0027199)	Prom1 (MGP_CAROLIEiJ_G0027198)
Shrew mouse	MODERN SPECIES	4	Stim2 (MGP_PahariEiJ_G0017010)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Cckar (MGP_PahariEiJ_G0017008)	Rbpj (MGP_PahariEiJ_G0017007)	Smim20 (MGP_PahariEiJ_G0017006)	Sel1l3 (MGP_PahariEiJ_G0017005)	Slc34a2 (MGP_PahariEiJ_G0017004)	Anapc4 (MGP_PahariEiJ_G0017003)	Zcchc4 (MGP_PahariEiJ_G0017002)	Pi4k2b (MGP_PahariEiJ_G0017001)	Sepsecs (MGP_PahariEiJ_G0017000)	Lgi2 (MGP_PahariEiJ_G0016999)	Ccdc149 (MGP_PahariEiJ_G0016998)	Sod3 (MGP_PahariEiJ_G0016997)	Dhx15 (MGP_PahariEiJ_G0016996)	Ppargc1a (MGP_PahariEiJ_G0016995) #22	Adgra3 (MGP_PahariEiJ_G0016994) #24	MGP_PahariEiJ_G0016993	Kcnip4 (MGP_PahariEiJ_G0016992)	5730480H06Rik (MGP_PahariEiJ_G0016991)	Slit2 (MGP_PahariEiJ_G0016990)	MGP_PahariEiJ_G0016989	Ncapg (MGP_PahariEiJ_G0016988)	Fam184b (MGP_PahariEiJ_G0016987)	Med28 (MGP_PahariEiJ_G0016986)	Lap3 (MGP_PahariEiJ_G0016985)	Clrn2 (MGP_PahariEiJ_G0016984)	Qdpr (MGP_PahariEiJ_G0016983)	Ldb2 (MGP_PahariEiJ_G0016982)	Tapt1 (MGP_PahariEiJ_G0016981)	Prom1 (MGP_PahariEiJ_G0016980)
Rat	MODERN SPECIES	5	Cckar (ENSRNOG00000043124)	Rbpj (ENSRNOG00000046327)	LOC100361259 (ENSRNOG00000055911)	AABR07015507.1 (ENSRNOG00000051190)	Sel1l3 (ENSRNOG00000004932)	Slc34a2 (ENSRNOG00000004626)	Anapc4 (ENSRNOG00000004130)	Zcchc4 (ENSRNOG00000029064)	Pi4k2b (ENSRNOG00000003924)	Sepsecs (ENSRNOG00000049244)	Lgi2 (ENSRNOG00000066201)	Ccdc149 (ENSRNOG00000024454)	ENSRNOG00000064588	Sod3 (ENSRNOG00000003869)	Dhx15 (ENSRNOG00000003844)	Ppargc1a (ENSRNOG00000004473) #22	ENSRNOG00000067137	AABR07015559.1 (ENSRNOG00000055015)	Hmgn1-ps6 (ENSRNOG00000069654)	Gba3 (ENSRNOG00000024634) #23	Adgra3 (ENSRNOG00000004279) #24	Ifitm3-ps1 (ENSRNOG00000048944)	Kcnip4 (ENSRNOG00000032350)	Pacrgl (ENSRNOG00000004140)	Slit2 (ENSRNOG00000003840)	ENSRNOG00000068270	Lcorl (ENSRNOG00000003787)	Ncapg (ENSRNOG00000038572)	Fam184b (ENSRNOG00000003704)	Med28 (ENSRNOG00000003592)	Lap3 (ENSRNOG00000003289)
Upper Galilee mountains blind mole rat	MODERN SPECIES	986	Cckar (ENSNGAG00000021342)	ENSNGAG00000021067	Rbpj (ENSNGAG00000013338)	Smim20 (ENSNGAG00000009723)	Sel1l3 (ENSNGAG00000008965)	Slc34a2 (ENSNGAG00000000788)	ENSNGAG00000019141	ENSNGAG00000018886	Zcchc4 (ENSNGAG00000015745)	Pi4k2b (ENSNGAG00000001252)	Sepsecs (ENSNGAG00000000721)	Lgi2 (ENSNGAG00000018556)	Ccdc149 (ENSNGAG00000017784)	Sod3 (ENSNGAG00000017105)	Dhx15 (ENSNGAG00000016196)	Ppargc1a (ENSNGAG00000015090) #22	ENSNGAG00000014375 #23	Adgra3 (ENSNGAG00000012199) #24
Lesser Egyptian jerboa	MODERN SPECIES	58	Tbc1d19 (ENSJJAG00000015623)	Cckar (ENSJJAG00000009819)	Rbpj (ENSJJAG00000024408)	Smim20 (ENSJJAG00000020734)	Sel1l3 (ENSJJAG00000018980)	Slc34a2 (ENSJJAG00000023515)	ENSJJAG00000023054	Zcchc4 (ENSJJAG00000016627)	Pi4k2b (ENSJJAG00000021578)	Sepsecs (ENSJJAG00000001251)	Lgi2 (ENSJJAG00000021018)	Ccdc149 (ENSJJAG00000016740)	Sod3 (ENSJJAG00000019475)	ENSJJAG00000010774	Dhx15 (ENSJJAG00000010364)	ENSJJAG00000018377 #22	ENSJJAG00000023479 #23	Adgra3 (ENSJJAG00000000786) #24	Kcnip4 (ENSJJAG00000016294)	ENSJJAG00000008981	ENSJJAG00000020450	Slit2 (ENSJJAG00000018613)	ENSJJAG00000017549	ENSJJAG00000017097	ENSJJAG00000020247	Ncapg (ENSJJAG00000023233)	Fam184b (ENSJJAG00000014582)	ENSJJAG00000022052	Lap3 (ENSJJAG00000016507)	Clrn2 (ENSJJAG00000010634)	Qdpr (ENSJJAG00000019964)
Kangaroo rat	MODERN SPECIES	327	ENSDORG00000028755	Stim2 (ENSDORG00000016610)	Tbc1d19 (ENSDORG00000013790)	Cckar (ENSDORG00000006353)	Rbpj (ENSDORG00000006352)	Smim20 (ENSDORG00000028531)	Sel1l3 (ENSDORG00000011773)	Slc34a2 (ENSDORG00000016105)	ENSDORG00000025086	ENSDORG00000012901	Pi4k2b (ENSDORG00000000491)	Sepsecs (ENSDORG00000012655)	Lgi2 (ENSDORG00000005632)	Ccdc149 (ENSDORG00000005628)	Dhx15 (ENSDORG00000013848)	Ppargc1a (ENSDORG00000016276) #22	ENSDORG00000011391 #23	Adgra3 (ENSDORG00000007520) #24	ENSDORG00000024508	Kcnip4 (ENSDORG00000015626)	5730480H06Rik (ENSDORG00000015625)	Slit2 (ENSDORG00000000584)	ENSDORG00000025331	Ncapg (ENSDORG00000013096)	ENSDORG00000028180	ENSDORG00000029831	Lap3 (ENSDORG00000008040)	Clrn2 (ENSDORG00000008037)	Qdpr (ENSDORG00000008034)	Ldb2 (ENSDORG00000010160)	Tapt1 (ENSDORG00000010543)
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00940000157221	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Degu	MODERN SPECIES	47	ENSODEG00000008773	TBC1D19 (ENSODEG00000007019)	CCKAR (ENSODEG00000007359)	ENSODEG00000007277	ENSODEG00000007321	SEL1L3 (ENSODEG00000008196)	SLC34A2 (ENSODEG00000010839)	ENSODEG00000019525	ENSODEG00000006972	ENSODEG00000007449	PI4K2B (ENSODEG00000008999)	SEPSECS (ENSODEG00000010607)	LGI2 (ENSODEG00000009206)	ENSODEG00000008421	ENSODEG00000008891	ENSODEG00000008409 #22	GBA3 (ENSODEG00000007983) #23	ADGRA3 (ENSODEG00000008912) #24	KCNIP4 (ENSODEG00000009132)	ENSODEG00000009142	SLIT2 (ENSODEG00000011554)	ENSODEG00000007550	ENSODEG00000007625	NCAPG (ENSODEG00000007988)	FAM184B (ENSODEG00000008017)	MED28 (ENSODEG00000010235)	ENSODEG00000008724	CLRN2 (ENSODEG00000009531)	QDPR (ENSODEG00000009810)	LDB2 (ENSODEG00000010335)	TAPT1 (ENSODEG00000007601)
Long-tailed chinchilla	MODERN SPECIES	187												LGI2 (ENSCLAG00000001203)	CCDC149 (ENSCLAG00000000982)	ENSCLAG00000017465	DHX15 (ENSCLAG00000000508)	PPARGC1A (ENSCLAG00000002058) #22	GBA3 (ENSCLAG00000002378) #23	ADGRA3 (ENSCLAG00000001094) #24	KCNIP4 (ENSCLAG00000001455)	PACRGL (ENSCLAG00000001007)	SLIT2 (ENSCLAG00000001413)	ENSCLAG00000002042	LCORL (ENSCLAG00000002297)	NCAPG (ENSCLAG00000000689)	FAM184B (ENSCLAG00000000877)	MED28 (ENSCLAG00000000626)	LAP3 (ENSCLAG00000000942)	CLRN2 (ENSCLAG00000001024)	QDPR (ENSCLAG00000000873)	LDB2 (ENSCLAG00000001146)	TAPT1 (ENSCLAG00000000811)
Guinea pig	MODERN SPECIES	50	TBC1D19 (ENSCPOG00000003940)	CCKAR (ENSCPOG00000007046)	RBPJ (ENSCPOG00000007041)	ENSCPOG00000040682	SMIM20 (ENSCPOG00000007684)	SEL1L3 (ENSCPOG00000001037)	SLC34A2 (ENSCPOG00000024165)	ANAPC4 (ENSCPOG00000013122)	ZCCHC4 (ENSCPOG00000011477)	PI4K2B (ENSCPOG00000015398)	SEPSECS (ENSCPOG00000035974)	LGI2 (ENSCPOG00000024161)	CCDC149 (ENSCPOG00000008895)	SOD3 (ENSCPOG00000035072)	DHX15 (ENSCPOG00000006467)	PPARGC1A (ENSCPOG00000001518) #22	GBA3 (ENSCPOG00000024273) #23	ADGRA3 (ENSCPOG00000014179) #24	KCNIP4 (ENSCPOG00000038077)	ENSCPOG00000039330
Naked mole-rat female	MODERN SPECIES	1	RBPJ (ENSHGLG00000010901)	ENSHGLG00000048407	ENSHGLG00000042802	SEL1L3 (ENSHGLG00000011887)	SLC34A2 (ENSHGLG00000012163)	ANAPC4 (ENSHGLG00000004987)	ENSHGLG00000039602	ZCCHC4 (ENSHGLG00000005154)	PI4K2B (ENSHGLG00000005194)	SEPSECS (ENSHGLG00000005236)	ENSHGLG00000031983	LGI2 (ENSHGLG00000034196)	CCDC149 (ENSHGLG00000045906)	SOD3 (ENSHGLG00000047646)	DHX15 (ENSHGLG00000006630)	PPARGC1A (ENSHGLG00000007022) #22	ENSHGLG00000041210	ENSHGLG00000046378 #23	ENSHGLG00000008324	ADGRA3 (ENSHGLG00000008661) #24	KCNIP4 (ENSHGLG00000009003)	ENSHGLG00000009348	ENSHGLG00000042478	PACRGL (ENSHGLG00000049060)	SLIT2 (ENSHGLG00000010533)	ENSHGLG00000003986	LCORL (ENSHGLG00000004100)	NCAPG (ENSHGLG00000004282)	FAM184B (ENSHGLG00000004352)	ENSHGLG00000004397	MED28 (ENSHGLG00000042367)
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Marmotini	ANCESTRAL SPECIES	26	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.e	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Alpin marmot	MODERN SPECIES	9	ENSMMMG00000017503	STIM2 (ENSMMMG00000017470)	CCKAR (ENSMMMG00000017438)	RBPJ (ENSMMMG00000017407)	SMIM20 (ENSMMMG00000017386)	SEL1L3 (ENSMMMG00000017356)	SLC34A2 (ENSMMMG00000017344)	ANAPC4 (ENSMMMG00000017319)	ZCCHC4 (ENSMMMG00000017301)	PI4K2B (ENSMMMG00000017289)	SEPSECS (ENSMMMG00000017270)	LGI2 (ENSMMMG00000017262)	CCDC149 (ENSMMMG00000017248)	DHX15 (ENSMMMG00000017227)	ENSMMMG00000017220	PPARGC1A (ENSMMMG00000017190) #22	GBA3 (ENSMMMG00000017174) #23	ADGRA3 (ENSMMMG00000017146) #24	KCNIP4 (ENSMMMG00000017078)	PACRGL (ENSMMMG00000017055)	SLIT2 (ENSMMMG00000016769)	ENSMMMG00000016741	ENSMMMG00000016736	ENSMMMG00000016717	NCAPG (ENSMMMG00000016692)	ENSMMMG00000016689	DCAF16 (ENSMMMG00000016681)	FAM184B (ENSMMMG00000016657)	ENSMMMG00000016639	LAP3 (ENSMMMG00000016620)	CLRN2 (ENSMMMG00000016613)
Marmotini_b	ANCESTRAL SPECIES	33	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.b	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b.g	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.e	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155725	ENSGT00730000111419	ENSGT00940000162414	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192.t	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Arctic ground squirrel	MODERN SPECIES	9	TBC1D19 (ENSUPAG00010018475)	CCKAR (ENSUPAG00010018463)	RBPJ (ENSUPAG00010018415)	SMIM20 (ENSUPAG00010018408)	SEL1L3 (ENSUPAG00010018378)	ENSUPAG00010018366	ANAPC4 (ENSUPAG00010018324)	ZCCHC4 (ENSUPAG00010018312)	PI4K2B (ENSUPAG00010018304)	SEPSECS (ENSUPAG00010018289)	LGI2 (ENSUPAG00010018269)	CCDC149 (ENSUPAG00010018257)	SOD3 (ENSUPAG00010018252)	DHX15 (ENSUPAG00010018237)	ENSUPAG00010018232	PPARGC1A (ENSUPAG00010018212) #22	GBA3 (ENSUPAG00010018197) #23	ADGRA3 (ENSUPAG00010018174) #24	KCNIP4 (ENSUPAG00010017944)	PACRGL (ENSUPAG00010017902)	SLIT2 (ENSUPAG00010017541)	ENSUPAG00010017517	ENSUPAG00010017493	DCAF16 (ENSUPAG00010017485)	NCAPG (ENSUPAG00010017444)	FAM184B (ENSUPAG00010017393)	ENSUPAG00010017366	LAP3 (ENSUPAG00010017358)	CLRN2 (ENSUPAG00010017347)	QDPR (ENSUPAG00010017321)	LDB2 (ENSUPAG00010017297)
Squirrel	MODERN SPECIES	77		STIM2 (ENSSTOG00000014072)	TBC1D19 (ENSSTOG00000024301)	CCKAR (ENSSTOG00000028796)	RBPJ (ENSSTOG00000004547)	SMIM20 (ENSSTOG00000004810)	SEL1L3 (ENSSTOG00000010415)	SLC34A2 (ENSSTOG00000012971)	ANAPC4 (ENSSTOG00000016156)	ZCCHC4 (ENSSTOG00000023603)	PI4K2B (ENSSTOG00000016146)	SEPSECS (ENSSTOG00000013399)	LGI2 (ENSSTOG00000002210)	ENSSTOG00000025245	ENSSTOG00000015000	PPARGC1A (ENSSTOG00000012522) #22	GBA3 (ENSSTOG00000030967) #23	ADGRA3 (ENSSTOG00000008272) #24	KCNIP4 (ENSSTOG00000014315)	PACRGL (ENSSTOG00000014307)	SLIT2 (ENSSTOG00000009778)	ENSSTOG00000030554	LCORL (ENSSTOG00000000960)	NCAPG (ENSSTOG00000023744)	DCAF16 (ENSSTOG00000000944)	FAM184B (ENSSTOG00000000931)	ENSSTOG00000000930	LAP3 (ENSSTOG00000000922)	CLRN2 (ENSSTOG00000009920)	QDPR (ENSSTOG00000009916)	ENSSTOG00000034519
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005011823	TBC1D19 (ENSSVLG00005011905)	CCKAR (ENSSVLG00005012173)	RBPJ (ENSSVLG00005012303)	SMIM20 (ENSSVLG00005012667)	SEL1L3 (ENSSVLG00005012722)	SLC34A2 (ENSSVLG00005013163)	ANAPC4 (ENSSVLG00005013305)	ZCCHC4 (ENSSVLG00005013382)	ENSSVLG00005013482	SEPSECS (ENSSVLG00005013560)	LGI2 (ENSSVLG00005013643)	CCDC149 (ENSSVLG00005013936)	SOD3 (ENSSVLG00005014382)	ENSSVLG00005014421	PPARGC1A (ENSSVLG00005014549) #22	GBA3 (ENSSVLG00005014999) #23	ADGRA3 (ENSSVLG00005015123) #24	KCNIP4 (ENSSVLG00005015491)	PACRGL (ENSSVLG00005016040)	SLIT2 (ENSSVLG00005016302)	ENSSVLG00005017689	LCORL (ENSSVLG00005017781)	NCAPG (ENSSVLG00005018065)	DCAF16 (ENSSVLG00005018117)	ENSSVLG00005018135	FAM184B (ENSSVLG00005018162)	ENSSVLG00005018337	LAP3 (ENSSVLG00005018397)	CLRN2 (ENSSVLG00005018469)	QDPR (ENSSVLG00005018520)
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000010628
Rabbit	MODERN SPECIES	11	TBC1D19 (ENSOCUG00000013465)	CCKAR (ENSOCUG00000013457)	RBPJ (ENSOCUG00000013449)	SMIM20 (ENSOCUG00000034394)	SEL1L3 (ENSOCUG00000017195)	SLC34A2 (ENSOCUG00000002944)	ANAPC4 (ENSOCUG00000016004)	ZCCHC4 (ENSOCUG00000015990)	PI4K2B (ENSOCUG00000015972)	SEPSECS (ENSOCUG00000008262)	LGI2 (ENSOCUG00000004764)	CCDC149 (ENSOCUG00000007463)	ENSOCUG00000007460	ENSOCUG00000019163	DHX15 (ENSOCUG00000003026)	PPARGC1A (ENSOCUG00000014668) #22	GBA3 (ENSOCUG00000005568) #23	ENSOCUG00000000919 #24	ENSOCUG00000035389 #24	ENSOCUG00000038173	ENSOCUG00000010595	KCNIP4 (ENSOCUG00000002189)	ENSOCUG00000002186	SLIT2 (ENSOCUG00000009517)	LCORL (ENSOCUG00000006802)	NCAPG (ENSOCUG00000006792)	ENSOCUG00000033408	DCAF16 (ENSOCUG00000021289)	FAM184B (ENSOCUG00000001582)	ENSOCUG00000001576	LAP3 (ENSOCUG00000001571)
Pika	MODERN SPECIES	188																PPARGC1A (ENSOPRG00000012899) #22
Tree shrew	MODERN SPECIES	320																PPARGC1A (ENSTBEG00000005147) #22
Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Suina	ANCESTRAL SPECIES	33	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00940000155145.qb	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT01010000227024	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Chacoan peccary	MODERN SPECIES	960	CCKAR (ENSCWAG00000013281)	RBPJ (ENSCWAG00000012916)	SMIM20 (ENSCWAG00000012836)	SEL1L3 (ENSCWAG00000012543)	SLC34A2 (ENSCWAG00000012428)	ENSCWAG00000012413	ANAPC4 (ENSCWAG00000012255)	ZCCHC4 (ENSCWAG00000012130)	PI4K2B (ENSCWAG00000011991)	SEPSECS (ENSCWAG00000011958)	LGI2 (ENSCWAG00000011876)	CCDC149 (ENSCWAG00000021648)	SOD3 (ENSCWAG00000021634)	DHX15 (ENSCWAG00000021627)	ENSCWAG00000021624	PPARGC1A (ENSCWAG00000021590) #22	GBA3 (ENSCWAG00000021575) #23	ADGRA3 (ENSCWAG00000021565) #24	KCNIP4 (ENSCWAG00000021434)	PACRGL (ENSCWAG00000021407)	SLIT2 (ENSCWAG00000021168)	LCORL (ENSCWAG00000021051)	NCAPG (ENSCWAG00000021025)	ENSCWAG00000021017	DCAF16 (ENSCWAG00000021010)	FAM184B (ENSCWAG00000020994)	MED28 (ENSCWAG00000020976)	LAP3 (ENSCWAG00000020960)	CLRN2 (ENSCWAG00000020951)	QDPR (ENSCWAG00000020915)	LDB2 (ENSCWAG00000020873)
Pig	MODERN SPECIES	16	CCKAR (ENSSSCG00000061661)	RBPJ (ENSSSCG00000022155)	ENSSSCG00000040571	SEL1L3 (ENSSSCG00000022446)	SLC34A2 (ENSSSCG00000008758)	ENSSSCG00000028632	ANAPC4 (ENSSSCG00000025902)	ZCCHC4 (ENSSSCG00000028581)	PI4K2B (ENSSSCG00000027340)	SEPSECS (ENSSSCG00000025315)	LGI2 (ENSSSCG00000028927)	CCDC149 (ENSSSCG00000023001)	SOD3 (ENSSSCG00000028814)	DHX15 (ENSSSCG00000008756)	ENSSSCG00000048996	PPARGC1A (ENSSSCG00000029275) #22	GBA3 (ENSSSCG00000008754) #23	ADGRA3 (ENSSSCG00000008753) #24	KCNIP4 (ENSSSCG00000023934)	PACRGL (ENSSSCG00000008750)	SLIT2 (ENSSSCG00000008749)	ENSSSCG00000045672	LCORL (ENSSSCG00000008748)	NCAPG (ENSSSCG00000008747)	DCAF16 (ENSSSCG00000040393)	FAM184B (ENSSSCG00000026232)	MED28 (ENSSSCG00000029989)	LAP3 (ENSSSCG00000023604)	CLRN2 (ENSSSCG00000023941)	QDPR (ENSSSCG00000034811)	LDB2 (ENSSSCG00000029227)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Camelidae	ANCESTRAL SPECIES	22	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Arabian camel	MODERN SPECIES	11	STIM2 (ENSCDRG00005011898)	TBC1D19 (ENSCDRG00005012784)	CCKAR (ENSCDRG00005013202)	RBPJ (ENSCDRG00005013306)	SMIM20 (ENSCDRG00005014579)	SEL1L3 (ENSCDRG00005014618)	SLC34A2 (ENSCDRG00005014773)	ANAPC4 (ENSCDRG00005014928)	ZCCHC4 (ENSCDRG00005015096)	PI4K2B (ENSCDRG00005015238)	SEPSECS (ENSCDRG00005015323)	LGI2 (ENSCDRG00005015363)	CCDC149 (ENSCDRG00005015468)	DHX15 (ENSCDRG00005015802)	ENSCDRG00005015845	PPARGC1A (ENSCDRG00005015905) #22	GBA3 (ENSCDRG00005016157) #23	ADGRA3 (ENSCDRG00005016284) #24	KCNIP4 (ENSCDRG00005017078)	PACRGL (ENSCDRG00005017336)	SLIT2 (ENSCDRG00005017665)	LCORL (ENSCDRG00005019406)	NCAPG (ENSCDRG00005019491)	DCAF16 (ENSCDRG00005019512)	ENSCDRG00005019521	FAM184B (ENSCDRG00005019524)	MED28 (ENSCDRG00005019543)	LAP3 (ENSCDRG00005019557)	CLRN2 (ENSCDRG00005019615)	QDPR (ENSCDRG00005019647)	LDB2 (ENSCDRG00005019698)
Alpaca	MODERN SPECIES	2139																PPARGC1A (ENSVPAG00000003478) #22	GBA3 (ENSVPAG00000003477) #23
Artiodactyla_b	ANCESTRAL SPECIES	16	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Pecora	ANCESTRAL SPECIES	15	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Percora_a	ANCESTRAL SPECIES	18	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Caprinae	ANCESTRAL SPECIES	13	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.e.b	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702	ENSGT00390000002509
Goat	MODERN SPECIES	25	TBC1D19 (ENSCHIG00000015018)	CCKAR (ENSCHIG00000024465)	RBPJ (ENSCHIG00000022041)	ENSCHIG00000026046	ENSCHIG00000016018	SEL1L3 (ENSCHIG00000020813)	SLC34A2 (ENSCHIG00000015739)	ANAPC4 (ENSCHIG00000023609)	ZCCHC4 (ENSCHIG00000022645)	PI4K2B (ENSCHIG00000022484)	SEPSECS (ENSCHIG00000010810)	LGI2 (ENSCHIG00000022089)	CCDC149 (ENSCHIG00000015517)	SOD3 (ENSCHIG00000017899)	DHX15 (ENSCHIG00000026321)	PPARGC1A (ENSCHIG00000015991) #22	GBA3 (ENSCHIG00000011472) #23	ADGRA3 (ENSCHIG00000019880) #24	KCNIP4 (ENSCHIG00000026213)	PACRGL (ENSCHIG00000003767)	SLIT2 (ENSCHIG00000026290)	ENSCHIG00000025245	ENSCHIG00000014191	LCORL (ENSCHIG00000019851)	NCAPG (ENSCHIG00000012343)	ENSCHIG00000004370	DCAF16 (ENSCHIG00000018352)	FAM184B (ENSCHIG00000018090)	MED28 (ENSCHIG00000026033)	LAP3 (ENSCHIG00000007898)	ENSCHIG00000016386
Rambouillet Sheep	MODERN SPECIES	22	CCKAR (ENSOARG00020019878)	RBPJ (ENSOARG00020019203)	ENSOARG00020019119	ENSOARG00020019074	SEL1L3 (ENSOARG00020017417)	SLC34A2 (ENSOARG00020017154)	ENSOARG00020017059	ANAPC4 (ENSOARG00020016174)	ZCCHC4 (ENSOARG00020016087)	PI4K2B (ENSOARG00020015990)	SEPSECS (ENSOARG00020015918)	LGI2 (ENSOARG00020015826)	CCDC149 (ENSOARG00020015431)	SOD3 (ENSOARG00020015395)	DHX15 (ENSOARG00020015199)	PPARGC1A (ENSOARG00020014504) #22	GBA3 (ENSOARG00020014356) #23	ENSOARG00020014326	ADGRA3 (ENSOARG00020012646) #24	KCNIP4 (ENSOARG00020010623)	PACRGL (ENSOARG00020009882)	SLIT2 (ENSOARG00020024781)	LCORL (ENSOARG00020024486)	NCAPG (ENSOARG00020024287)	ENSOARG00020024265	DCAF16 (ENSOARG00020024261)	FAM184B (ENSOARG00020024233)	MED28 (ENSOARG00020024224)	LAP3 (ENSOARG00020024149)	IBSP (ENSOARG00020024136)	ENSOARG00020024122
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f.b.b	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192.mb	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Bos	ANCESTRAL SPECIES	15	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f.b.b	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00390000012430.a.a	ENSGT00530000063669.a	ENSGT00390000006192.mb	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Bos_a	ANCESTRAL SPECIES	33					ENSGT00390000002398.f.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192.mb	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702	ENSGT00390000002509
Domestic yak	MODERN SPECIES	25	TBC1D19 (ENSBGRG00000010907)	CCKAR (ENSBGRG00000011346)	ENSBGRG00000011453	ENSBGRG00000011943	SEL1L3 (ENSBGRG00000012074)	SLC34A2 (ENSBGRG00000012616)	ANAPC4 (ENSBGRG00000012791)	ZCCHC4 (ENSBGRG00000013290)	PI4K2B (ENSBGRG00000013424)	ENSBGRG00000013553	ENSBGRG00000013588	LGI2 (ENSBGRG00000013655)	CCDC149 (ENSBGRG00000013831)	SOD3 (ENSBGRG00000014092)	DHX15 (ENSBGRG00000014165)	PPARGC1A (ENSBGRG00000014262) #22	ENSBGRG00000014626	GBA3 (ENSBGRG00000014640) #23	ADGRA3 (ENSBGRG00000014715) #24	KCNIP4 (ENSBGRG00000015106)	ENSBGRG00000016237	PACRGL (ENSBGRG00000016270)	SLIT2 (ENSBGRG00000016692)	LCORL (ENSBGRG00000018966)	NCAPG (ENSBGRG00000019203)	DCAF16 (ENSBGRG00000019480)	ENSBGRG00000019505	FAM184B (ENSBGRG00000019554)	ENSBGRG00000020045	LAP3 (ENSBGRG00000020079)	IBSP (ENSBGRG00000020277)
Wild yak	MODERN SPECIES	883		CCKAR (ENSBMUG00000009499)	ENSBMUG00000009400	ENSBMUG00000009243	SEL1L3 (ENSBMUG00000009222)	SLC34A2 (ENSBMUG00000009192)	ANAPC4 (ENSBMUG00000009147)	ZCCHC4 (ENSBMUG00000009112)	PI4K2B (ENSBMUG00000009097)	ENSBMUG00000009090	ENSBMUG00000009078	LGI2 (ENSBMUG00000009065)	CCDC149 (ENSBMUG00000009015)	SOD3 (ENSBMUG00000008945)	DHX15 (ENSBMUG00000008926)	PPARGC1A (ENSBMUG00000008896) #22	GBA3 (ENSBMUG00000008806) #23	ADGRA3 (ENSBMUG00000008551) #24	KCNIP4 (ENSBMUG00000008314)	PACRGL (ENSBMUG00000008109)	SLIT2 (ENSBMUG00000007699)	ENSBMUG00000007576	LCORL (ENSBMUG00000007513)	DCAF16 (ENSBMUG00000007469)	NCAPG (ENSBMUG00000007457)
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.f.b.b	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.a	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192.mb	ENSGT00530000063255.B	ENSGT00390000002485	ENSGT00390000010702
Hybrid Bos Indicus	MODERN SPECIES	25	TBC1D19 (ENSBIXG00005014867)	CCKAR (ENSBIXG00005014904)	ENSBIXG00005014915	ENSBIXG00005015160	ENSBIXG00005015232	SEL1L3 (ENSBIXG00005015302)	SLC34A2 (ENSBIXG00005015405)	ANAPC4 (ENSBIXG00005015494)	ZCCHC4 (ENSBIXG00005015528)	PI4K2B (ENSBIXG00005007139)	SEPSECS (ENSBIXG00005015627)	LGI2 (ENSBIXG00005015662)	CCDC149 (ENSBIXG00005015720)	SOD3 (ENSBIXG00005015766)	DHX15 (ENSBIXG00005000158)	PPARGC1A (ENSBIXG00005002513) #22	GBA3 (ENSBIXG00005002538) #23	ADGRA3 (ENSBIXG00005016078) #24	KCNIP4 (ENSBIXG00005016282)	PACRGL (ENSBIXG00005016395)	SLIT2 (ENSBIXG00005016517)	LCORL (ENSBIXG00005016615)	NCAPG (ENSBIXG00005016643)	ENSBIXG00005016657	DCAF16 (ENSBIXG00005016667)	FAM184B (ENSBIXG00005016686)	MED28 (ENSBIXG00005016711)	LAP3 (ENSBIXG00005002708)	IBSP (ENSBIXG00005002715)	MEPE (ENSBIXG00005016833)	SPP1 (ENSBIXG00005002733)
Cow	MODERN SPECIES	25	TBC1D19 (ENSBTAG00000033214)	CCKAR (ENSBTAG00000004988)	RBPJ (ENSBTAG00000003602)	SMIM20 (ENSBTAG00000003897)	SEL1L3 (ENSBTAG00000002299)	SLC34A2 (ENSBTAG00000001545)	ANAPC4 (ENSBTAG00000000646)	ZCCHC4 (ENSBTAG00000007240)	PI4K2B (ENSBTAG00000006492)	SEPSECS (ENSBTAG00000014616)	LGI2 (ENSBTAG00000017390)	CCDC149 (ENSBTAG00000021940)	SOD3 (ENSBTAG00000013980)	DHX15 (ENSBTAG00000008896)	ENSBTAG00000050251	PPARGC1A (ENSBTAG00000017024) #22	ENSBTAG00000033327	ENSBTAG00000054175	GBA3 (ENSBTAG00000020363) #23	ADGRA3 (ENSBTAG00000004653) #24	KCNIP4 (ENSBTAG00000047743)	PACRGL (ENSBTAG00000033351)	SLIT2 (ENSBTAG00000005108)	LCORL (ENSBTAG00000046561)	DCAF16 (ENSBTAG00000011973)	NCAPG (ENSBTAG00000021582)	FAM184B (ENSBTAG00000005932)	MED28 (ENSBTAG00000019441)	LAP3 (ENSBTAG00000005989)	IBSP (ENSBTAG00000000470)	MEPE (ENSBTAG00000007568)
American bison	MODERN SPECIES	3060	STIM2 (ENSBBBG00000000908)	TBC1D19 (ENSBBBG00000000826)	CCKAR (ENSBBBG00000000817)	ENSBBBG00000014989	ENSBBBG00000015008	SEL1L3 (ENSBBBG00000015090)	SLC34A2 (ENSBBBG00000015150)	ANAPC4 (ENSBBBG00000003767)	ZCCHC4 (ENSBBBG00000003522)	PI4K2B (ENSBBBG00000015277)	SEPSECS (ENSBBBG00000015291)	LGI2 (ENSBBBG00000015299)	CCDC149 (ENSBBBG00000001370)	SOD3 (ENSBBBG00000001360)	DHX15 (ENSBBBG00000001321)	PPARGC1A (ENSBBBG00000003508) #22	GBA3 (ENSBBBG00000015331) #23	ADGRA3 (ENSBBBG00000015349) #24
Siberian musk deer	MODERN SPECIES	1269	CCKAR (ENSMMSG00000013523)	RBPJ (ENSMMSG00000013568)	ENSMMSG00000013732	ENSMMSG00000013746	SEL1L3 (ENSMMSG00000013767)	SLC34A2 (ENSMMSG00000013857)	ENSMMSG00000013917	ANAPC4 (ENSMMSG00000013938)	ENSMMSG00000013962	PI4K2B (ENSMMSG00000013983)	SEPSECS (ENSMMSG00000014034)	LGI2 (ENSMMSG00000014063)	CCDC149 (ENSMMSG00000014088)	SOD3 (ENSMMSG00000014159)	DHX15 (ENSMMSG00000014182)	PPARGC1A (ENSMMSG00000014222) #22	GBA3 (ENSMMSG00000014264) #23	ADGRA3 (ENSMMSG00000014314) #24	ENSMMSG00000014413	KCNIP4 (ENSMMSG00000014468)	PACRGL (ENSMMSG00000015388)	SLIT2 (ENSMMSG00000015533)
Yarkand deer	MODERN SPECIES	8	ENSCHYG00000009099	TBC1D19 (ENSCHYG00000008635)	CCKAR (ENSCHYG00000008569)	RBPJ (ENSCHYG00000008084)	ENSCHYG00000008030	ENSCHYG00000008010	SEL1L3 (ENSCHYG00000007618)	ANAPC4 (ENSCHYG00000007432)	ZCCHC4 (ENSCHYG00000007309)	PI4K2B (ENSCHYG00000007192)	SEPSECS (ENSCHYG00000007094)	LGI2 (ENSCHYG00000007044)	CCDC149 (ENSCHYG00000006926)	SOD3 (ENSCHYG00000006891)	DHX15 (ENSCHYG00000021793)	PPARGC1A (ENSCHYG00000021428) #22	GBA3 (ENSCHYG00000021332) #23	ADGRA3 (ENSCHYG00000021204) #24	KCNIP4 (ENSCHYG00000020826)	PACRGL (ENSCHYG00000020362)	SLIT2 (ENSCHYG00000017605)	LCORL (ENSCHYG00000017174)	NCAPG (ENSCHYG00000016981)	ENSCHYG00000016911	DCAF16 (ENSCHYG00000016863)	FAM184B (ENSCHYG00000016331)	MED28 (ENSCHYG00000016257)	LAP3 (ENSCHYG00000016057)	ENSCHYG00000015978	IBSP (ENSCHYG00000015873)	MEPE (ENSCHYG00000015726)
Cetacea	ANCESTRAL SPECIES	12	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.d	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT01030000234638.b.a.b.q.a
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a.z	ENSGT00390000002398.d	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.b	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT01030000234638.b.a.b.q.a
Odontoceti_a	ANCESTRAL SPECIES	22					ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Dolphin	MODERN SPECIES	4177																PPARGC1A (ENSTTRG00000005327) #22
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT01100000263563.c.b	ENSGT00390000005197.a.z	ENSGT00390000002398.d	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000005197.a.y.a	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Monodontidae	ANCESTRAL SPECIES	9	ENSGT01100000263563.c.b	ENSGT00390000005197.a.z	ENSGT00390000002398.d	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000005197.a.y.a	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000155046.ib	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430.a.b	ENSGT00990000204159	ENSGT00390000012430.b	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B
Narwhal	MODERN SPECIES	307	TBC1D19 (ENSMMNG00015008369)	CCKAR (ENSMMNG00015008421)	ENSMMNG00015008477	ENSMMNG00015008545	SEL1L3 (ENSMMNG00015008572)	SLC34A2 (ENSMMNG00015008603)	ENSMMNG00015008616	ANAPC4 (ENSMMNG00015008631)	ZCCHC4 (ENSMMNG00015008659)	PI4K2B (ENSMMNG00015008695)	SEPSECS (ENSMMNG00015008713)	LGI2 (ENSMMNG00015008731)	CCDC149 (ENSMMNG00015008754)	DHX15 (ENSMMNG00015008799)	ENSMMNG00015008809	PPARGC1A (ENSMMNG00015008833) #22	ENSMMNG00015008863 #23	ADGRA3 (ENSMMNG00015008884) #24	KCNIP4 (ENSMMNG00015008956)	PACRGL (ENSMMNG00015009050)	SLIT2 (ENSMMNG00015009152)	ENSMMNG00015009273	ENSMMNG00015009280	LCORL (ENSMMNG00015009296)	NCAPG (ENSMMNG00015007354)	DCAF16 (ENSMMNG00015007397)	FAM184B (ENSMMNG00015007424)	MED28 (ENSMMNG00015007473)	LAP3 (ENSMMNG00015007496)	CLRN2 (ENSMMNG00015007529)	QDPR (ENSMMNG00015007572)
Beluga whale	MODERN SPECIES	77	TBC1D19 (ENSDLEG00000013283)	CCKAR (ENSDLEG00000013378)	RBPJ (ENSDLEG00000013407)	SMIM20 (ENSDLEG00000013675)	SEL1L3 (ENSDLEG00000013692)	SLC34A2 (ENSDLEG00000013774)	ANAPC4 (ENSDLEG00000013885)	ZCCHC4 (ENSDLEG00000013994)	PI4K2B (ENSDLEG00000014029)	SEPSECS (ENSDLEG00000014056)	LGI2 (ENSDLEG00000014089)	CCDC149 (ENSDLEG00000014195)	SOD3 (ENSDLEG00000014224)	DHX15 (ENSDLEG00000014245)	ENSDLEG00000014273	PPARGC1A (ENSDLEG00000014290) #22	ADGRA3 (ENSDLEG00000014341) #24	KCNIP4 (ENSDLEG00000014391)	PACRGL (ENSDLEG00000014457)	SLIT2 (ENSDLEG00000014508)	ENSDLEG00000014713	ENSDLEG00000014730	PITPNA (ENSDLEG00000014743)	LCORL (ENSDLEG00000014752)	LCORL (ENSDLEG00000014767)	NCAPG (ENSDLEG00000014792)	ENSDLEG00000015016	ENSDLEG00000015021	FAM184B (ENSDLEG00000015028)	MED28 (ENSDLEG00000015066)	LAP3 (ENSDLEG00000015076)
Vaquita	MODERN SPECIES	16	ENSPSNG00000021513	SMIM20 (ENSPSNG00000021406)	SEL1L3 (ENSPSNG00000021270)	SLC34A2 (ENSPSNG00000021188)	ENSPSNG00000021159	ANAPC4 (ENSPSNG00000021117)	ZCCHC4 (ENSPSNG00000021077)	PI4K2B (ENSPSNG00000021008)	SEPSECS (ENSPSNG00000020956)	LGI2 (ENSPSNG00000020909)	CCDC149 (ENSPSNG00000020784)	SOD3 (ENSPSNG00000020739)	DHX15 (ENSPSNG00000020699)	ENSPSNG00000020677	ENSPSNG00000020646	PPARGC1A (ENSPSNG00000020569) #22	ADGRA3 (ENSPSNG00000020337) #24	KCNIP4 (ENSPSNG00000019756)	PACRGL (ENSPSNG00000019499)	SLIT2 (ENSPSNG00000017795)	ENSPSNG00000017595	LCORL (ENSPSNG00000017486)	NCAPG (ENSPSNG00000017383)	DCAF16 (ENSPSNG00000017358)	FAM184B (ENSPSNG00000017332)	MED28 (ENSPSNG00000017283)	ENSPSNG00000017095	CLRN2 (ENSPSNG00000017033)	QDPR (ENSPSNG00000016877)	LDB2 (ENSPSNG00000016774)	TAPT1 (ENSPSNG00000015826)
Sperm whale	MODERN SPECIES	18	ENSPCTG00005009237	TBC1D19 (ENSPCTG00005009308)	CCKAR (ENSPCTG00005009612)	ENSPCTG00005009702	ENSPCTG00005010143	SEL1L3 (ENSPCTG00005010228)	ENSPCTG00005010721	ANAPC4 (ENSPCTG00005010830)	ZCCHC4 (ENSPCTG00005010952)	PI4K2B (ENSPCTG00005011034)	SEPSECS (ENSPCTG00005011169)	LGI2 (ENSPCTG00005011194)	CCDC149 (ENSPCTG00005011289)	SOD3 (ENSPCTG00005011496)	DHX15 (ENSPCTG00005011521)	PPARGC1A (ENSPCTG00005011631) #22	ENSPCTG00005011760 #23	ADGRA3 (ENSPCTG00005011845) #24	KCNIP4 (ENSPCTG00005012048)	PACRGL (ENSPCTG00005012723)	SLIT2 (ENSPCTG00005013113)	ENSPCTG00005015108	LCORL (ENSPCTG00005015166)	NCAPG (ENSPCTG00005015312)	DCAF16 (ENSPCTG00005015428)	ENSPCTG00005015449	FAM184B (ENSPCTG00005015473)	MED28 (ENSPCTG00005015699)	LAP3 (ENSPCTG00005015721)	ENSPCTG00005015805	CLRN2 (ENSPCTG00005015878)
Blue whale	MODERN SPECIES	16	STIM2 (ENSBMSG00010000991)	ENSBMSG00010001022	TBC1D19 (ENSBMSG00010001070)	CCKAR (ENSBMSG00010001131)	ENSBMSG00010001239	SMIM20 (ENSBMSG00010001389)	SEL1L3 (ENSBMSG00010001472)	SLC34A2 (ENSBMSG00010001530)	ANAPC4 (ENSBMSG00010001569)	ZCCHC4 (ENSBMSG00010001603)	PI4K2B (ENSBMSG00010001625)	SEPSECS (ENSBMSG00010001650)	LGI2 (ENSBMSG00010001673)	CCDC149 (ENSBMSG00010001719)	DHX15 (ENSBMSG00010001763)	PPARGC1A (ENSBMSG00010001849) #22	ENSBMSG00010001976 #23	ADGRA3 (ENSBMSG00010002059) #24	KCNIP4 (ENSBMSG00010002394)	ENSBMSG00010002859	PACRGL (ENSBMSG00010002900)	SLIT2 (ENSBMSG00010003178)	ENSBMSG00010003522	LCORL (ENSBMSG00010003554)	NCAPG (ENSBMSG00010003593)	DCAF16 (ENSBMSG00010003609)	FAM184B (ENSBMSG00010003615)	ENSBMSG00010003627	LAP3 (ENSBMSG00010003642)	ENSBMSG00010003653	CLRN2 (ENSBMSG00010003668)
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Carnivora	ANCESTRAL SPECIES	5	ENSGT00970000193677	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Caniformia	ANCESTRAL SPECIES	7	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00970000193677	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Ursidae	ANCESTRAL SPECIES	29	ENSGT00390000015965	ENSGT00950000182895.a.a.a.a.a.a.b.a.a.c.b	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Ursus	ANCESTRAL SPECIES	180	ENSGT00970000193677	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Polar bear	MODERN SPECIES	128	TBC1D19 (ENSUMAG00000004209)	ENSUMAG00000004204	CCKAR (ENSUMAG00000004192)	RBPJ (ENSUMAG00000004171)	SMIM20 (ENSUMAG00000004164)	SEL1L3 (ENSUMAG00000003892)	SLC34A2 (ENSUMAG00000003792)	ANAPC4 (ENSUMAG00000003767)	ZCCHC4 (ENSUMAG00000003758)	PI4K2B (ENSUMAG00000003697)	SEPSECS (ENSUMAG00000003690)	LGI2 (ENSUMAG00000003678)	CCDC149 (ENSUMAG00000003673)	ENSUMAG00000003656	DHX15 (ENSUMAG00000003647)	PPARGC1A (ENSUMAG00000003557) #22	GBA3 (ENSUMAG00000003537) #23	ADGRA3 (ENSUMAG00000003527) #24	KCNIP4 (ENSUMAG00000003497)	PACRGL (ENSUMAG00000003485)	SLIT2 (ENSUMAG00000003439)
American black bear	MODERN SPECIES	2594																PPARGC1A (ENSUAMG00000020843) #22
Giant Panda	MODERN SPECIES	2	ENSAMEG00000023854	CAR1 (ENSAMEG00000031321)	CCKAR (ENSAMEG00000014732)	RBPJ (ENSAMEG00000018082)	SMIM20 (ENSAMEG00000018092)	SEL1L3 (ENSAMEG00000018094)	SLC34A2 (ENSAMEG00000018105)	ANAPC4 (ENSAMEG00000018114)	ZCCHC4 (ENSAMEG00000027841)	PI4K2B (ENSAMEG00000014735)	SEPSECS (ENSAMEG00000014700)	LGI2 (ENSAMEG00000008417)	CCDC149 (ENSAMEG00000008440)	SOD3 (ENSAMEG00000023550)	DHX15 (ENSAMEG00000010482)	PPARGC1A (ENSAMEG00000010421) #22	GBA3 (ENSAMEG00000006494) #23	ADGRA3 (ENSAMEG00000006461) #24	KCNIP4 (ENSAMEG00000006445)	PACRGL (ENSAMEG00000006436)	SLIT2 (ENSAMEG00000006196)	LCORL (ENSAMEG00000000192)	NCAPG (ENSAMEG00000000194)	DCAF16 (ENSAMEG00000019722)	ENSAMEG00000028828	FAM184B (ENSAMEG00000000208)	MED28 (ENSAMEG00000001760)	LAP3 (ENSAMEG00000001748)	CLRN2 (ENSAMEG00000001743)	QDPR (ENSAMEG00000001735)	LDB2 (ENSAMEG00000001733)
Mustelinae	ANCESTRAL SPECIES	112	ENSGT00970000193677	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00960000191062
Ferret	MODERN SPECIES	252	TBC1D19 (ENSMPUG00000016711)	CCKAR (ENSMPUG00000016713)	RBPJ (ENSMPUG00000016715)	ENSMPUG00000016716	ENSMPUG00000016717	SEL1L3 (ENSMPUG00000016719)	SLC34A2 (ENSMPUG00000016722)	ANAPC4 (ENSMPUG00000016724)	ZCCHC4 (ENSMPUG00000016727)	PI4K2B (ENSMPUG00000016729)	SEPSECS (ENSMPUG00000016732)	LGI2 (ENSMPUG00000016733)	CCDC149 (ENSMPUG00000016734)	SOD3 (ENSMPUG00000020131)	DHX15 (ENSMPUG00000016735)	PPARGC1A (ENSMPUG00000016736) #22	GBA3 (ENSMPUG00000016738) #23	ADGRA3 (ENSMPUG00000016741) #24	KCNIP4 (ENSMPUG00000016743)	PACRGL (ENSMPUG00000016745)	SLIT2 (ENSMPUG00000016755)
American mink	MODERN SPECIES	32	CCKAR (ENSNVIG00000013587)	ENSNVIG00000013579	RBPJ (ENSNVIG00000013517)	SMIM20 (ENSNVIG00000013500)	SEL1L3 (ENSNVIG00000013431)	SLC34A2 (ENSNVIG00000013390)	ANAPC4 (ENSNVIG00000013320)	ZCCHC4 (ENSNVIG00000013287)	PI4K2B (ENSNVIG00000013261)	ENSNVIG00000013245	SEPSECS (ENSNVIG00000013227)	LGI2 (ENSNVIG00000013203)	CCDC149 (ENSNVIG00000013098)	SOD3 (ENSNVIG00000013084)	DHX15 (ENSNVIG00000013069)	PPARGC1A (ENSNVIG00000012965) #22	ENSNVIG00000012944 #23	ADGRA3 (ENSNVIG00000012904) #24	KCNIP4 (ENSNVIG00000012734)	PACRL (ENSNVIG00000012630)	SLIT2 (ENSNVIG00000012226)	ENSNVIG00000012188	LCORL (ENSNVIG00000012088)	NCAPG (ENSNVIG00000012054)	ENSNVIG00000012047	DCA16 (ENSNVIG00000012046)	FAM184B (ENSNVIG00000012028)	MED28 (ENSNVIG00000011999)	LAP3 (ENSNVIG00000011980)	CLRN2 (ENSNVIG00000011967)	QDPR (ENSNVIG00000011920)
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00990000204159	ENSGT00390000012430	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000165250	ENSGT00940000156736
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556.i	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000163089.b.l.a.b	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00940000157061.a	ENSGT00940000159900	ENSGT00940000153137.a.a.f	ENSGT00940000160999	ENSGT00740000115581.f	ENSGT00940000165250
Dog	MODERN SPECIES	22	CAR1 (ENSCAFG00845005825)	CCKAR (ENSCAFG00845005880)	RBPJ (ENSCAFG00845005977)	ENSCAFG00845006105	SMIM20 (ENSCAFG00845006127)	SEL1L3 (ENSCAFG00845006276)	SLC34A2 (ENSCAFG00845006845)	ANAPC4 (ENSCAFG00845007014)	ZCCHC4 (ENSCAFG00845007308)	PI4K2B (ENSCAFG00845007474)	SEPSECS (ENSCAFG00845007550)	LGI2 (ENSCAFG00845007610)	CCDC149 (ENSCAFG00845007671)	SOD3 (ENSCAFG00845007800)	DHX15 (ENSCAFG00845007821)	PPARGC1A (ENSCAFG00845008311) #22	GBA3 (ENSCAFG00845008730) #23	ADGRA3 (ENSCAFG00845008840) #24	KCNIP4 (ENSCAFG00845009227)	PACRGL (ENSCAFG00845009809)	ENSCAFG00845010003	SLIT2 (ENSCAFG00845010097)	ENSCAFG00845000335	LCORL (ENSCAFG00845000382)	NCAPG (ENSCAFG00845000445)	ENSCAFG00845000722	ENSCAFG00845000771	ENSCAFG00845000883	ENSCAFG00845000897	TMED11 (ENSCAFG00845000919)	ENSCAFG00845000939
Dingo	MODERN SPECIES	138	CCKAR (ENSCAFG00020027326)	RBPJ (ENSCAFG00020027303)	ENSCAFG00020027299	SEL1L3 (ENSCAFG00020027291)	SLC34A2 (ENSCAFG00020027270)	ANAPC4 (ENSCAFG00020027256)	ENSCAFG00020027253	ENSCAFG00020027252	PI4K2B (ENSCAFG00020027250)	SEPSECS (ENSCAFG00020027249)	LGI2 (ENSCAFG00020027248)	CCDC149 (ENSCAFG00020027247)	SOD3 (ENSCAFG00020027246)	DHX15 (ENSCAFG00020027245)	ENSCAFG00020027244	PPARGC1A (ENSCAFG00020027242) #22	GBA3 (ENSCAFG00020027241) #23	ADGRA3 (ENSCAFG00020027238) #24	KCNIP4 (ENSCAFG00020027237)	PACRGL (ENSCAFG00020027236)	ENSCAFG00020027235	SLIT2 (ENSCAFG00020027191)	ENSCAFG00020027105	ENSCAFG00020027097	NCAPG (ENSCAFG00020027090)	ENSCAFG00020027087	DCAF16 (ENSCAFG00020027085)	CTBP1 (ENSCAFG00020027072)	SPON2 (ENSCAFG00020027066)	ENSCAFG00020027065	ENSCAFG00020027063
Red fox	MODERN SPECIES	1	ENSVVUG00000013949	TBC1D19 (ENSVVUG00000013875)	CCKAR (ENSVVUG00000013858)	RBPJ (ENSVVUG00000013837)	SMIM20 (ENSVVUG00000013812)	SEL1L3 (ENSVVUG00000013804)	SLC34A2 (ENSVVUG00000013552)	ANAPC4 (ENSVVUG00000013531)	ZCCHC4 (ENSVVUG00000013506)	PI4K2B (ENSVVUG00000013490)	SEPSECS (ENSVVUG00000013476)	LGI2 (ENSVVUG00000013458)	CCDC149 (ENSVVUG00000013407)	DHX15 (ENSVVUG00000013395)	ENSVVUG00000013388	PPARGC1A (ENSVVUG00000013365) #22	ENSVVUG00000013361	GBA3 (ENSVVUG00000013354) #23	ADGRA3 (ENSVVUG00000013329) #24	KCNIP4 (ENSVVUG00000013290)	PACRGL (ENSVVUG00000013266)	SLIT2 (ENSVVUG00000013236)	LCORL (ENSVVUG00000013122)	NCAPG (ENSVVUG00000013106)	ENSVVUG00000013105	DCAF16 (ENSVVUG00000013103)	CTBP1 (ENSVVUG00000013060)	SPON2 (ENSVVUG00000013053)	ENSVVUG00000013034	FGFRL1 (ENSVVUG00000013026)	IDUA (ENSVVUG00000013021)
Felidae	ANCESTRAL SPECIES	4	ENSGT00970000193677	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Panthera	ANCESTRAL SPECIES	5	ENSGT00970000193677	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00970000193677	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
lion	MODERN SPECIES	4	ENSPLOG00000013017	CCKAR (ENSPLOG00000013057)	RBPJ (ENSPLOG00000013224)	ENSPLOG00000013526	SEL1L3 (ENSPLOG00000013599)	SLC34A2 (ENSPLOG00000013975)	ANAPC4 (ENSPLOG00000014198)	ZCCHC4 (ENSPLOG00000014263)	PI4K2B (ENSPLOG00000014324)	SEPSECS (ENSPLOG00000014441)	LGI2 (ENSPLOG00000014551)	CCDC149 (ENSPLOG00000014724)	SOD3 (ENSPLOG00000015212)	DHX15 (ENSPLOG00000015238)	ENSPLOG00000015280	PPARGC1A (ENSPLOG00000015341) #22	GBA3 (ENSPLOG00000015752) #23	ADGRA3 (ENSPLOG00000015872) #24	KCNIP4 (ENSPLOG00000016314)	PACRGL (ENSPLOG00000016813)	SLIT2 (ENSPLOG00000017126)	LCORL (ENSPLOG00000018632)	NCAPG (ENSPLOG00000018793)	DCAF16 (ENSPLOG00000018834)	ENSPLOG00000018846	FAM184B (ENSPLOG00000018870)	MED28 (ENSPLOG00000019074)	LAP3 (ENSPLOG00000019113)	CLRN2 (ENSPLOG00000019148)	QDPR (ENSPLOG00000019184)	LDB2 (ENSPLOG00000019312)
leopard	MODERN SPECIES	25	CCKAR (ENSPPRG00000024018)	RBPJ (ENSPPRG00000024386)	SMIM20 (ENSPPRG00000018812)	SEL1L3 (ENSPPRG00000018369)	ENSPPRG00000009004	SLC34A2 (ENSPPRG00000008628)	ANAPC4 (ENSPPRG00000006664)	ZCCHC4 (ENSPPRG00000006329)	PI4K2B (ENSPPRG00000006151)	SEPSECS (ENSPPRG00000005618)	LGI2 (ENSPPRG00000005473)	CCDC149 (ENSPPRG00000005074)	SOD3 (ENSPPRG00000020880)	DHX15 (ENSPPRG00000002164)	ENSPPRG00000020851	PPARGC1A (ENSPPRG00000001711) #22	GBA3 (ENSPPRG00000000195) #23	ADGRA3 (ENSPPRG00000022711) #24	KCNIP4 (ENSPPRG00000023823)	PACRGL (ENSPPRG00000024486)	SLIT2 (ENSPPRG00000024875)	LCORL (ENSPPRG00000011434)	NCAPG (ENSPPRG00000009186)	DCAF16 (ENSPPRG00000019998)	ENSPPRG00000019983	FAM184B (ENSPPRG00000008574)	MED28 (ENSPPRG00000007960)	LAP3 (ENSPPRG00000007349)	CLRN2 (ENSPPRG00000006945)	QDPR (ENSPPRG00000006672)	LDB2 (ENSPPRG00000005287)
Tiger	MODERN SPECIES	439															ENSPTIG00000003842	PPARGC1A (ENSPTIG00000007378) #22	GBA3 (ENSPTIG00000009959) #23	ADGRA3 (ENSPTIG00000011265) #24	KCNIP4 (ENSPTIG00000012906)	PACRGL (ENSPTIG00000017096)	SLIT2 (ENSPTIG00000019043)	LCORL (ENSPTIG00000007463)	NCAPG (ENSPTIG00000010747)	DCAF16 (ENSPTIG00000005268)	ENSPTIG00000005270	FAM184B (ENSPTIG00000012636)	MED28 (ENSPTIG00000013729)	LAP3 (ENSPTIG00000013871)	CLRN2 (ENSPTIG00000015501)	QDPR (ENSPTIG00000015700)	LDB2 (ENSPTIG00000017280)
Cat	MODERN SPECIES	235	CAR1 (ENSFCAG00000049200)	CCKAR (ENSFCAG00000007718)	RBPJ (ENSFCAG00000030363)	SMIM20 (ENSFCAG00000046718)	SEL1L3 (ENSFCAG00000013720)	SLC34A2 (ENSFCAG00000029965)	ANAPC4 (ENSFCAG00000042946)	ZCCHC4 (ENSFCAG00000023396)	PI4K2B (ENSFCAG00000025109)	SEPSECS (ENSFCAG00000023094)	LGI2 (ENSFCAG00000032361)	CCDC149 (ENSFCAG00000015383)	SOD3 (ENSFCAG00000045310)	DHX15 (ENSFCAG00000009234)	ENSFCAG00000040987	PPARGC1A (ENSFCAG00000000043) #22	GBA3 (ENSFCAG00000031717) #23	ADGRA3 (ENSFCAG00000027302) #24	KCNIP4 (ENSFCAG00000014899)	PACRGL (ENSFCAG00000035192)	SLIT2 (ENSFCAG00000031735)	LCORL (ENSFCAG00000029474)	NCAPG (ENSFCAG00000030778)	DCAF16 (ENSFCAG00000002836)	ENSFCAG00000038117	FAM184B (ENSFCAG00000002835)	MED28 (ENSFCAG00000041406)	LAP3 (ENSFCAG00000026136)	CLRN2 (ENSFCAG00000002833)	QDPR (ENSFCAG00000002832)	LDB2 (ENSFCAG00000010092)
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Equus	ANCESTRAL SPECIES	12	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT01090000263426	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470
Donkey	MODERN SPECIES	22	STIM2 (ENSEASG00005008051)	TBC1D19 (ENSEASG00005008046)	CCKAR (ENSEASG00005038229)	RBPJ (ENSEASG00005008027)	SMIM20 (ENSEASG00005024155)	SEL1L3 (ENSEASG00005008020)	SLC34A2 (ENSEASG00005008016)	ANAPC4 (ENSEASG00005008014)	ZCCHC4 (ENSEASG00005008011)	PI4K2B (ENSEASG00005008006)	SEPSECS (ENSEASG00005008003)	LGI2 (ENSEASG00005008001)	CCDC149 (ENSEASG00005008000)	SOD3 (ENSEASG00005033891)	ENSEASG00005007991	ENSEASG00005007984 #22	ENSEASG00005009587	ZFAND5 (ENSEASG00005009586)	TMC1 (ENSEASG00005036859)	ALDH1A1 (ENSEASG00005009584)	ANXA1 (ENSEASG00005007925)	RORB (ENSEASG00005007922)	TRPM6 (ENSEASG00005007843)	ENSEASG00005007794	ENSEASG00005027501	ENSEASG00005005051	TLE4 (ENSEASG00005005032)	PSAT1 (ENSEASG00005005021)	CEP78 (ENSEASG00005005009)	ENSEASG00005005001	GNAQ (ENSEASG00005004998)
Horse	MODERN SPECIES	22	CCKAR (ENSECAG00000017266)	RBPJ (ENSECAG00000019257)	ENSECAG00000002201	SMIM20 (ENSECAG00000041550)	SEL1L3 (ENSECAG00000000638)	SLC34A2 (ENSECAG00000013315)	ANAPC4 (ENSECAG00000017692)	ZCCHC4 (ENSECAG00000007352)	PI4K2B (ENSECAG00000008251)	SEPSECS (ENSECAG00000009932)	LGI2 (ENSECAG00000016152)	CCDC149 (ENSECAG00000022451)	SOD3 (ENSECAG00000035543)	ENSECAG00000045825	DHX15 (ENSECAG00000023224)	PPARGC1A (ENSECAG00000009164) #22	GBA3 (ENSECAG00000014346) #23	ADGRA3 (ENSECAG00000014865) #24	KCNIP4 (ENSECAG00000018365)	PACRGL (ENSECAG00000021508)	SLIT2 (ENSECAG00000022407)	ENSECAG00000057886	ENSECAG00000003040	LCORL (ENSECAG00000000648)	NCAPG (ENSECAG00000007470)	DCAF16 (ENSECAG00000002410)	FAM184B (ENSECAG00000013661)	MED28 (ENSECAG00000017465)	LAP3 (ENSECAG00000018272)	CLRN2 (ENSECAG00000039666)	QDPR (ENSECAG00000005662)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00940000165139.b	ENSGT00940000162414.n	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00900000143693	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00940000165139.b	ENSGT00940000162414.n	ENSGT00390000001577	ENSGT00390000012430	ENSGT00990000204159	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Greater horseshoe bat	MODERN SPECIES	23	RBPJ (ENSRFEG00010000987)	ENSRFEG00010001068	ENSRFEG00010001077	SMIM20 (ENSRFEG00010001089)	SEL1L3 (ENSRFEG00010001115)	SLC34A2 (ENSRFEG00010001179)	ANAPC4 (ENSRFEG00010001248)	ZCCHC4 (ENSRFEG00010001312)	PI4K2B (ENSRFEG00010001371)	SEPSECS (ENSRFEG00010001416)	LGI2 (ENSRFEG00010001447)	CCDC149 (ENSRFEG00010001512)	SOD3 (ENSRFEG00010001657)	DHX15 (ENSRFEG00010001673)	ENSRFEG00010001699	PPARGC1A (ENSRFEG00010001741) #22	GBA3 (ENSRFEG00010001815) #23	ADGRA3 (ENSRFEG00010001866) #24	KCNIP4 (ENSRFEG00010001993)	ENSRFEG00010002058	PACRGL (ENSRFEG00010002088)	SLIT2 (ENSRFEG00010002355)	ENSRFEG00010002832	LCORL (ENSRFEG00010002869)	NCAPG (ENSRFEG00010002948)	DCAF16 (ENSRFEG00010002974)	ENSRFEG00010002981	FAM184B (ENSRFEG00010003021)	ENSRFEG00010003059	LAP3 (ENSRFEG00010003082)	CLRN2 (ENSRFEG00010003114)
Microbat	MODERN SPECIES	1049	TBC1D19 (ENSMLUG00000017193)	ENSMLUG00000023226	CCKAR (ENSMLUG00000017191)	RBPJ (ENSMLUG00000017187)	SMIM20 (ENSMLUG00000000713)	SEL1L3 (ENSMLUG00000000702)	ENSMLUG00000000694	ANAPC4 (ENSMLUG00000004233)	ZCCHC4 (ENSMLUG00000004225)	PI4K2B (ENSMLUG00000001044)	SEPSECS (ENSMLUG00000005883)	LGI2 (ENSMLUG00000005887)	CCDC149 (ENSMLUG00000014745)	SOD3 (ENSMLUG00000014742)	DHX15 (ENSMLUG00000001617)	PPARGC1A (ENSMLUG00000016307) #22	ENSMLUG00000027956	ENSMLUG00000027157	GBA3 (ENSMLUG00000009213) #23	ADGRA3 (ENSMLUG00000003454) #24	ENSMLUG00000023890
Megabat	MODERN SPECIES	4799																PPARGC1A (ENSPVAG00000004965) #22
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183137.b.a #22
Common shrew	MODERN SPECIES	784																PPARGC1A (ENSSARG00000000575) #22
Hedgehog	MODERN SPECIES	1245																PPARGC1A (ENSEEUG00000009219) #22
Atlantogenata	ANCESTRAL SPECIES	46	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139.b	ENSGT00940000162414	ENSGT00390000001577	ENSGT00390000012430	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Xenarthra	ANCESTRAL SPECIES	385					ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22
Armadillo	MODERN SPECIES	1850	RBPJ (ENSDNOG00000035383)	ENSDNOG00000043501	ENSDNOG00000043946	SEL1L3 (ENSDNOG00000004313)	ENSDNOG00000039515	SLC34A2 (ENSDNOG00000032564)	ENSDNOG00000032662	ANAPC4 (ENSDNOG00000032226)	ZCCHC4 (ENSDNOG00000004525)	PI4K2B (ENSDNOG00000044369)	SEPSECS (ENSDNOG00000049494)	LGI2 (ENSDNOG00000037791)	CCDC149 (ENSDNOG00000038755)	SOD3 (ENSDNOG00000024793)	DHX15 (ENSDNOG00000014438)	PPARGC1A (ENSDNOG00000041106) #22
Sloth	MODERN SPECIES	990																PPARGC1A (ENSCHOG00000000367) #22
Afrotheria	ANCESTRAL SPECIES	53	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Afrotheria_a	ANCESTRAL SPECIES	50	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Elephant	MODERN SPECIES	164	TBC1D19 (ENSLAFG00000009636)	CCKAR (ENSLAFG00000000294)	RBPJ (ENSLAFG00000000410)	ENSLAFG00000007091	SEL1L3 (ENSLAFG00000012362)	ENSLAFG00000013325	ENSLAFG00000026426	ANAPC4 (ENSLAFG00000012242)	ZCCHC4 (ENSLAFG00000012234)	PI4K2B (ENSLAFG00000012228)	SEPSECS (ENSLAFG00000010804)	LGI2 (ENSLAFG00000002475)	CCDC149 (ENSLAFG00000007108)	SOD3 (ENSLAFG00000022899)	DHX15 (ENSLAFG00000005466)	PPARGC1A (ENSLAFG00000012981) #22	ENSLAFG00000030988	GBA3 (ENSLAFG00000029577) #23	ADGRA3 (ENSLAFG00000003897) #24	KCNIP4 (ENSLAFG00000005792)	PACRGL (ENSLAFG00000005786)	SLIT2 (ENSLAFG00000017738)	ENSLAFG00000009691	NCAPG (ENSLAFG00000009686)	FAM184B (ENSLAFG00000015420)	MED28 (ENSLAFG00000016936)	LAP3 (ENSLAFG00000016929)	CLRN2 (ENSLAFG00000016844)	QDPR (ENSLAFG00000004518)	LDB2 (ENSLAFG00000000552)	ENSLAFG00000028231
Hyrax	MODERN SPECIES	9969																PPARGC1A (ENSPCAG00000016308) #22
Tenrec	MODERN SPECIES	1211																PPARGC1A (ENSETEG00000018091) #22
Marsupialia	ANCESTRAL SPECIES	7	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b.r	ENSGT00950000183177.a.a.b.q	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Marsupialia_b	ANCESTRAL SPECIES	8	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.a.a.b.r	ENSGT00950000183177.a.a.b.q	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Diprotodontia	ANCESTRAL SPECIES	10	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b.q	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Diprotodontia_a	ANCESTRAL SPECIES	12	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398.a	ENSGT00940000159983	ENSGT00950000183177.a.a.b.q	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
koala	MODERN SPECIES	2	STIM2 (ENSPCIG00000034168)	TBC1D19 (ENSPCIG00000031776)	CCKAR (ENSPCIG00000020497)	RBPJ (ENSPCIG00000020491)	ENSPCIG00000020488	SEL1L3 (ENSPCIG00000020485)	SLC34A2 (ENSPCIG00000010248)	ANAPC4 (ENSPCIG00000004096)	ZCCHC4 (ENSPCIG00000004082)	PI4K2B (ENSPCIG00000004075)	SEPSECS (ENSPCIG00000004071)	LGI2 (ENSPCIG00000004064)	CCDC149 (ENSPCIG00000004052)	SOD3 (ENSPCIG00000004032)	DHX15 (ENSPCIG00000004023)	PPARGC1A (ENSPCIG00000015835) #22	GBA3 (ENSPCIG00000031948) #23	ADGRA3 (ENSPCIG00000003169) #24	KCNIP4 (ENSPCIG00000032533)	PACRGL (ENSPCIG00000001570)	SLIT2 (ENSPCIG00000001602)	ENSPCIG00000033287	LCORL (ENSPCIG00000002185)	NCAPG (ENSPCIG00000002094)	FAM184B (ENSPCIG00000002043)	MED28 (ENSPCIG00000002020)	LAP3 (ENSPCIG00000001974)	ENSPCIG00000001957	CLRN2 (ENSPCIG00000034320)	QDPR (ENSPCIG00000036849)	LDB2 (ENSPCIG00000018570)
Common wonbat	MODERN SPECIES	1054	ENSVURG00010005042	SEL1L3 (ENSVURG00010005010)	ENSVURG00010005005	ENSVURG00010004876	ENSVURG00010004770	ENSVURG00010004760	ENSVURG00010004753	ANAPC4 (ENSVURG00010004724)	ZCCHC4 (ENSVURG00010004655)	PI4K2B (ENSVURG00010004516)	SEPSECS (ENSVURG00010004502)	LGI2 (ENSVURG00010004467)	CCDC149 (ENSVURG00010004454)	ENSVURG00010004425	DHX15 (ENSVURG00010004378)	PPARGC1A (ENSVURG00010004128) #22	GBA3 (ENSVURG00010003981) #23	ADGRA3 (ENSVURG00010003909) #24	KCNIP4 (ENSVURG00010003721)	PACRGL (ENSVURG00010003638)	SLIT2 (ENSVURG00010003053)	ENSVURG00010002861	LCORL (ENSVURG00010002792)	NCAPG (ENSVURG00010002704)	FAM184B (ENSVURG00010002687)	MED28 (ENSVURG00010002668)	LAP3 (ENSVURG00010002623)	CLRN2 (ENSVURG00010002616)	QDPR (ENSVURG00010002603)	LDB2 (ENSVURG00010002542)	TAPT1 (ENSVURG00010001958)
Wallaby	MODERN SPECIES	1882																PPARGC1A (ENSMEUG00000006008) #22
Tasmanian devil	MODERN SPECIES	5	SEL1L3 (ENSSHAG00000009419)	ENSSHAG00000023004	ENSSHAG00000028205	ENSSHAG00000031795	ENSSHAG00000010890	ENSSHAG00000004649	ENSSHAG00000010251	ANAPC4 (ENSSHAG00000003402)	ZCCHC4 (ENSSHAG00000004438)	PI4K2B (ENSSHAG00000031409)	SEPSECS (ENSSHAG00000007001)	LGI2 (ENSSHAG00000031544)	CCDC149 (ENSSHAG00000022022)	SOD3 (ENSSHAG00000010341)	DHX15 (ENSSHAG00000011568)	PPARGC1A (ENSSHAG00000010033) #22	GBA3 (ENSSHAG00000014922) #23	ADGRA3 (ENSSHAG00000015732) #24	KCNIP4 (ENSSHAG00000018003)	PACRGL (ENSSHAG00000018246)	SLIT2 (ENSSHAG00000018310)	LCORL (ENSSHAG00000022282)	NCAPG (ENSSHAG00000016051)	FAM184B (ENSSHAG00000030198)	MED28 (ENSSHAG00000021089)	LAP3 (ENSSHAG00000016352)	CLRN2 (ENSSHAG00000020791)	QDPR (ENSSHAG00000020885)	LDB2 (ENSSHAG00000017644)	TAPT1 (ENSSHAG00000026955)	PROM1 (ENSSHAG00000018318)
Opossum	MODERN SPECIES	4	ENSMODG00000025549	ENSMODG00000027534	ENSMODG00000025532	ENSMODG00000041870	ENSMODG00000000304	ENSMODG00000049518	ENSMODG00000000328	ENSMODG00000000363	ZCCHC4 (ENSMODG00000000388)	PI4K2B (ENSMODG00000000405)	SEPSECS (ENSMODG00000000423)	LGI2 (ENSMODG00000000460)	CCDC149 (ENSMODG00000000471)	ENSMODG00000000474	DHX15 (ENSMODG00000000516)	PPARGC1A (ENSMODG00000000549) #22	ENSMODG00000027716	ENSMODG00000051423	GBA3 (ENSMODG00000000560) #23	ADGRA3 (ENSMODG00000000582) #24	ENSMODG00000024777	ENSMODG00000029251	ENSMODG00000042215	ENSMODG00000000625	PACRGL (ENSMODG00000000641)	SLIT2 (ENSMODG00000000731)	ENSMODG00000050739	ENSMODG00000000757	NCAPG (ENSMODG00000000781)	FAM184B (ENSMODG00000000804)	MED28 (ENSMODG00000000813)
Platypus	MODERN SPECIES	9	STIM2 (ENSOANG00000006701)	TBC1D19 (ENSOANG00000006700)	CCKAR (ENSOANG00000029819)	RBPJ (ENSOANG00000006699)	ENSOANG00000037572	SEL1L3 (ENSOANG00000006697)	SLC34A2 (ENSOANG00000006695)	ANAPC4 (ENSOANG00000006689)	ZCCHC4 (ENSOANG00000006688)	PI4K2B (ENSOANG00000006681)	SEPSECS (ENSOANG00000045251)	LGI2 (ENSOANG00000041994)	CCDC149 (ENSOANG00000006683)	ENSOANG00000038598	DHX15 (ENSOANG00000006682)	PPARGC1A (ENSOANG00000006680) #22	GBA3 (ENSOANG00000006679) #23	ADGRA3 (ENSOANG00000006677) #24	KCNIP4 (ENSOANG00000006672)	ENSOANG00000006671	SLIT2 (ENSOANG00000006668)	ENSOANG00000006667	NCAPG (ENSOANG00000006664)	ENSOANG00000006663	MED28 (ENSOANG00000047599)	LAP3 (ENSOANG00000006661)	CLRN2 (ENSOANG00000039129)	DEPDC1 (ENSOANG00000006658)	RPE65 (ENSOANG00000006656)	WLS (ENSOANG00000007764)	DIRAS2 (ENSOANG00000042492)
Sauria	ANCESTRAL SPECIES	6	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00940000177623	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Archelosauria	ANCESTRAL SPECIES	4	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Archosauria	ANCESTRAL SPECIES	1	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Aves	ANCESTRAL SPECIES	3	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Neognathae	ANCESTRAL SPECIES	5	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Galloanserae	ANCESTRAL SPECIES	5	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Anatidae	ANCESTRAL SPECIES	2	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b	ENSGT00940000154372.a.a
Duck	MODERN SPECIES	22	TBC1D19 (ENSAPLG00000007019)	CCKAR (ENSAPLG00000025740)	ENSAPLG00000020697	RBPJ (ENSAPLG00000007512)	SMIM20 (ENSAPLG00000026829)	SEL1L3 (ENSAPLG00000007928)	ENSAPLG00000008254	ENSAPLG00000016667	ZCCHC4 (ENSAPLG00000009717)	PI4K2B (ENSAPLG00000009723)	SEPSECS (ENSAPLG00000009962)	LGI2 (ENSAPLG00000019636)	CCDC149 (ENSAPLG00000010671)	SOD3 (ENSAPLG00000001811)	DHX15 (ENSAPLG00000005889)	PPARGC1A (ENSAPLG00000005303) #22	ADGRA3 (ENSAPLG00000009086) #24	KCNIP4 (ENSAPLG00000009534)	PACRGL (ENSAPLG00000009745)	SLIT2 (ENSAPLG00000009781)	ENSAPLG00000024706	ENSAPLG00000006384	NCAPG (ENSAPLG00000006687)	FAM184B (ENSAPLG00000007157)	MED28 (ENSAPLG00000007405)	LAP3 (ENSAPLG00000007431)	CLRN2 (ENSAPLG00000007712)	QDPR (ENSAPLG00000007721)	LDB2 (ENSAPLG00000007630)	TAPT1 (ENSAPLG00000007389)	PROM1 (ENSAPLG00000006442)
Pink-footed goose	MODERN SPECIES	57			CCKAR (ENSABRG00000015392)	RBPJ (ENSABRG00000015380)	ENSABRG00000015367	SEL1L3 (ENSABRG00000015358)	ENSABRG00000015346	ANAPC4 (ENSABRG00000014877)	ZCCHC4 (ENSABRG00000014832)	PI4K2B (ENSABRG00000014824)	SEPSECS (ENSABRG00000014796)	LGI2 (ENSABRG00000014793)	CCDC149 (ENSABRG00000014788)	SOD3 (ENSABRG00000014787)	DHX15 (ENSABRG00000014781)	PPARGC1A (ENSABRG00000014767) #22	ENSABRG00000014762	ADGRA3 (ENSABRG00000014750) #24	KCNIP4 (ENSABRG00000014740)	PACRGL (ENSABRG00000014727)	SLIT2 (ENSABRG00000014700)	LCORL (ENSABRG00000014672)	NCAPG (ENSABRG00000014658)	FAM184B (ENSABRG00000014647)	MED28 (ENSABRG00000014643)	LAP3 (ENSABRG00000014639)	CLRN2 (ENSABRG00000014636)	QDPR (ENSABRG00000014631)	LDB2 (ENSABRG00000014613)	TAPT1 (ENSABRG00000014605)	PROM1 (ENSABRG00000014568)
Phasianidae	ANCESTRAL SPECIES	2	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Phasianidae_b	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a.a	ENSGT00530000063669.a.b	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Turkey	MODERN SPECIES	24	STIM2 (ENSMGAG00000012398)	TBC1D19 (ENSMGAG00000012405)	CCKAR (ENSMGAG00000012415)	RBPJ (ENSMGAG00000012418)	SMIM20 (ENSMGAG00000018966)	SEL1L3 (ENSMGAG00000012431)	ENSMGAG00000012440	ANAPC4 (ENSMGAG00000012445)	ZCCHC4 (ENSMGAG00000012455)	PI4K2B (ENSMGAG00000012457)	SEPSECS (ENSMGAG00000012465)	LGI2 (ENSMGAG00000012466)	CCDC149 (ENSMGAG00000012469)	SOD3 (ENSMGAG00000012473)	DHX15 (ENSMGAG00000012477)	PPARGC1A (ENSMGAG00000012485) #22	ADGRA3 (ENSMGAG00000012495) #24	KCNIP4 (ENSMGAG00000012506)	PACRGL (ENSMGAG00000012511)	SLIT2 (ENSMGAG00000012515)	ENSMGAG00000017819	ENSMGAG00000022532	ENSMGAG00000007141	ENSMGAG00000021486	ENSMGAG00000012554	LCORL (ENSMGAG00000018531)	NCAPG (ENSMGAG00000012563)	FAM184B (ENSMGAG00000012574)	LAP3 (ENSMGAG00000012582)	CLRN2 (ENSMGAG00000012587)	QDPR (ENSMGAG00000012588)
Chicken	MODERN SPECIES	33	TBC1D19 (ENSGALG00010010722)	CCKAR (ENSGALG00010010732)	RBPJ (ENSGALG00010010837)	SMIM20 (ENSGALG00010010853)	SEL1L3 (ENSGALG00010010857)	SLC34A2 (ENSGALG00010010900)	ANAPC4 (ENSGALG00010010933)	ZCCHC4 (ENSGALG00010010939)	PI4K2B (ENSGALG00010010945)	SEPSECS (ENSGALG00010010161)	ENSGALG00010010175	LGI2 (ENSGALG00010010178)	CCDC149 (ENSGALG00010009728)	SOD3 (ENSGALG00010009833)	DHX15 (ENSGALG00010009943)	PPARGC1A (ENSGALG00010010006) #22	ENSGALG00010010027 #23	ADGRA3 (ENSGALG00010009200) #24	KCNIP4 (ENSGALG00010010298)	PACRGL (ENSGALG00010010308)	SLIT2 (ENSGALG00010010383)	LCORL (ENSGALG00010010971)	LCORL (ENSGALG00010010958)	NCAPG (ENSGALG00010010974)	ENSGALG00010012058	ENSGALG00010010979	MED28 (ENSGALG00010010983)	LAP3 (ENSGALG00010010997)	CLRN2 (ENSGALG00010011000)	QDPR (ENSGALG00010011018)	LDB2 (ENSGALG00010011096)
Japanese quail	MODERN SPECIES	22	TBC1D19 (ENSCJPG00005018350)	CCKAR (ENSCJPG00005018351)	RBPJ (ENSCJPG00005018352)	SMIM20 (ENSCJPG00005018355)	SEL1L3 (ENSCJPG00005018359)	ENSCJPG00005018366	ANAPC4 (ENSCJPG00005018368)	ZCCHC4 (ENSCJPG00005018369)	PI4K2B (ENSCJPG00005018370)	SEPSECS (ENSCJPG00005018371)	ENSCJPG00005018372	LGI2 (ENSCJPG00005018373)	CCDC149 (ENSCJPG00005018374)	SOD3 (ENSCJPG00005018375)	DHX15 (ENSCJPG00005018376)	PPARGC1A (ENSCJPG00005018379) #22	ADGRA3 (ENSCJPG00005018386) #24	KCNIP4 (ENSCJPG00005018389)	PACRGL (ENSCJPG00005018390)	SLIT2 (ENSCJPG00005018391)	LCORL (ENSCJPG00005018397)	NCAPG (ENSCJPG00005018398)	FAM184B (ENSCJPG00005018399)	MED28 (ENSCJPG00005018400)	LAP3 (ENSCJPG00005018401)	CLRN2 (ENSCJPG00005018402)	QDPR (ENSCJPG00005018403)	LDB2 (ENSCJPG00005018404)	TAPT1 (ENSCJPG00005018406)	PROM1 (ENSCJPG00005018407)	FGFBP2 (ENSCJPG00005018408)
Neognathae_b	ANCESTRAL SPECIES	4	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Neognathae_c	ANCESTRAL SPECIES	3	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00980000201267	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Golden eagle	MODERN SPECIES		STIM2 (ENSACCG00020000216)	TBC1D19 (ENSACCG00020000215)	CCKAR (ENSACCG00020000214)	RBPJ (ENSACCG00020000213)	SMIM20 (ENSACCG00020000212)	SEL1L3 (ENSACCG00020000211)	ENSACCG00020000210	ANAPC4 (ENSACCG00020000209)	ZCCHC4 (ENSACCG00020000208)	PI4K2B (ENSACCG00020000207)	SEPSECS (ENSACCG00020000206)	LGI2 (ENSACCG00020000205)	CCDC149 (ENSACCG00020000204)	SOD3 (ENSACCG00020000203)	DHX15 (ENSACCG00020000202)	PPARGC1A (ENSACCG00020000201) #22	ADGRA3 (ENSACCG00020000200) #24	KCNIP4 (ENSACCG00020000199)	PACRGL (ENSACCG00020000198)	SLIT2 (ENSACCG00020000196)	ENSACCG00020000195	LCORL (ENSACCG00020000194)	NCAPG (ENSACCG00020000193)	FAM184B (ENSACCG00020000192)	MED28 (ENSACCG00020000191)	LAP3 (ENSACCG00020000190)	CLRN2 (ENSACCG00020000189)	QDPR (ENSACCG00020000188)	LDB2 (ENSACCG00020000187)	TAPT1 (ENSACCG00020000186)	PROM1 (ENSACCG00020000185)
Kakapo	MODERN SPECIES	24	CCKAR (ENSSHBG00005018052)	RBPJ (ENSSHBG00005018048)	ENSSHBG00005018043	ENSSHBG00005018035	SEL1L3 (ENSSHBG00005018031)	ENSSHBG00005018026	ENSSHBG00005018018	ENSSHBG00005018011	ZCCHC4 (ENSSHBG00005018004)	PI4K2B (ENSSHBG00005018001)	SEPSECS (ENSSHBG00005017996)	LGI2 (ENSSHBG00005017808)	CCDC149 (ENSSHBG00005017766)	SOD3 (ENSSHBG00005017737)	DHX15 (ENSSHBG00005017735)	PPARGC1A (ENSSHBG00005017729) #22	ENSSHBG00005017723	ADGRA3 (ENSSHBG00005017709) #24	ENSSHBG00005017698	KCNIP4 (ENSSHBG00005017689)	PACRGL (ENSSHBG00005017674)	SLIT2 (ENSSHBG00005012686)	LCORL (ENSSHBG00005011891)	ENSSHBG00005011838	ENSSHBG00005011809	ENSSHBG00005011791	MED28 (ENSSHBG00005011774)	LAP3 (ENSSHBG00005011753)	CLRN2 (ENSSHBG00005011732)	QDPR (ENSSHBG00005011714)	LDB2 (ENSSHBG00005011680)
Passeriformes	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Passeriformes_d	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b	ENSGT00390000010628	ENSGT00530000063586.b
Passeriformes_g	DUPLICATION
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.b #22	ENSGT00950000183137.b.a.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b	ENSGT00390000010628	ENSGT00530000063586.b
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.b #22	ENSGT00950000183137.b.a.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b	ENSGT00390000010628	ENSGT00530000063586.b
Zebra finch	MODERN SPECIES	25	STIM2 (ENSTGUG00000009177)	TBC1D19 (ENSTGUG00000009193)	CCKAR (ENSTGUG00000009230)	RBPJ (ENSTGUG00000009245)	SMIM20 (ENSTGUG00000009263)	SEL1L3 (ENSTGUG00000009265)	ENSTGUG00000009289	ANAPC4 (ENSTGUG00000009328)	ZCCHC4 (ENSTGUG00000009397)	PI4K2B (ENSTGUG00000009404)	SEPSECS (ENSTGUG00000009417)	LGI2 (ENSTGUG00000021263)	CCDC149 (ENSTGUG00000009438)	SOD3 (ENSTGUG00000009451)	DHX15 (ENSTGUG00000009452)	PPARGC1A (ENSTGUG00000009487) #22	ADGRA3 (ENSTGUG00000009517) #24	KCNIP4 (ENSTGUG00000009548)	PACRGL (ENSTGUG00000009573)	SLIT2 (ENSTGUG00000009575)	LCORL (ENSTGUG00000024633)	NCAPG (ENSTGUG00000009641)	FAM184B (ENSTGUG00000009652)	MED28 (ENSTGUG00000009655)	LAP3 (ENSTGUG00000009661)	CLRN2 (ENSTGUG00000021577)	QDPR (ENSTGUG00000023659)	LDB2 (ENSTGUG00000009708)	TAPT1 (ENSTGUG00000009719)	PROM1 (ENSTGUG00000009725)	FGFBP2 (ENSTGUG00000009762)
Medium ground finch	MODERN SPECIES		TBC1D19 (ENSGFOG00000001691)	CCKAR (ENSGFOG00000001670)	RBPJ (ENSGFOG00000001663)	ENSGFOG00000001653	SEL1L3 (ENSGFOG00000001635)	ENSGFOG00000001618	ANAPC4 (ENSGFOG00000001587)	ZCCHC4 (ENSGFOG00000001560)	PI4K2B (ENSGFOG00000001541)	SEPSECS (ENSGFOG00000001468)	LGI2 (ENSGFOG00000001453)	CCDC149 (ENSGFOG00000001434)	SOD3 (ENSGFOG00000001424)	DHX15 (ENSGFOG00000001405)	ENSGFOG00000001391 #22	ENSGFOG00000001383 #22	ADGRA3 (ENSGFOG00000001255) #24	KCNIP4 (ENSGFOG00000001224)	PACRGL (ENSGFOG00000001209)	SLIT2 (ENSGFOG00000001040)	LCORL (ENSGFOG00000001000)	NCAPG (ENSGFOG00000000976)	FAM184B (ENSGFOG00000000947)	MED28 (ENSGFOG00000000924)	LAP3 (ENSGFOG00000000912)	CLRN2 (ENSGFOG00000000908)	QDPR (ENSGFOG00000000896)	LDB2 (ENSGFOG00000000880)	TAPT1 (ENSGFOG00000000647)	PROM1 (ENSGFOG00000000527)	FGFBP2 (ENSGFOG00000000505)
Passeriformes_g	ANCESTRAL SPECIES	5	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.b #22	ENSGT00950000183137.b.a.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b	ENSGT00390000010628
Passeroidea	ANCESTRAL SPECIES	4	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.b #22	ENSGT00950000183137.b.a.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a.b	ENSGT00390000010628
Common canary	MODERN SPECIES	2	STIM2 (ENSSCAG00000004950)	TBC1D19 (ENSSCAG00000004860)	CCKAR (ENSSCAG00000004827)	RBPJ (ENSSCAG00000004817)	SMIM20 (ENSSCAG00000004809)	SEL1L3 (ENSSCAG00000004798)	ENSSCAG00000004791	ANAPC4 (ENSSCAG00000004765)	ZCCHC4 (ENSSCAG00000004739)	PI4K2B (ENSSCAG00000004729)	SEPSECS (ENSSCAG00000004722)	LGI2 (ENSSCAG00000004718)	CCDC149 (ENSSCAG00000004710)	SOD3 (ENSSCAG00000004707)	DHX15 (ENSSCAG00000004696)	PPARGC1A (ENSSCAG00000004681) #22	ADGRA3 (ENSSCAG00000004631) #24	KCNIP4 (ENSSCAG00000004606)	PACRGL (ENSSCAG00000004596)	SLIT2 (ENSSCAG00000002023)	ENSSCAG00000001527	LCORL (ENSSCAG00000001523)	NCAPG (ENSSCAG00000001509)	FAM184B (ENSSCAG00000001496)	MED28 (ENSSCAG00000001491)	LAP3 (ENSSCAG00000001484)	CLRN2 (ENSSCAG00000001470)	QDPR (ENSSCAG00000001462)	LDB2 (ENSSCAG00000001448)	TAPT1 (ENSSCAG00000001104)	PROM1 (ENSSCAG00000000963)
Medium ground finch	MODERN SPECIES		STIM2 (ENSGFOG00000001728)	TBC1D19 (ENSGFOG00000001691)	CCKAR (ENSGFOG00000001670)	RBPJ (ENSGFOG00000001663)	ENSGFOG00000001653	SEL1L3 (ENSGFOG00000001635)	ENSGFOG00000001618	ANAPC4 (ENSGFOG00000001587)	ZCCHC4 (ENSGFOG00000001560)	PI4K2B (ENSGFOG00000001541)	SEPSECS (ENSGFOG00000001468)	LGI2 (ENSGFOG00000001453)	CCDC149 (ENSGFOG00000001434)	SOD3 (ENSGFOG00000001424)	DHX15 (ENSGFOG00000001405)	ENSGFOG00000001391 #22	ENSGFOG00000001383 #22	ADGRA3 (ENSGFOG00000001255) #24	KCNIP4 (ENSGFOG00000001224)	PACRGL (ENSGFOG00000001209)	SLIT2 (ENSGFOG00000001040)	LCORL (ENSGFOG00000001000)	NCAPG (ENSGFOG00000000976)	FAM184B (ENSGFOG00000000947)	MED28 (ENSGFOG00000000924)	LAP3 (ENSGFOG00000000912)	CLRN2 (ENSGFOG00000000908)	QDPR (ENSGFOG00000000896)	LDB2 (ENSGFOG00000000880)	TAPT1 (ENSGFOG00000000647)	PROM1 (ENSGFOG00000000527)
Flycatcher	MODERN SPECIES	22	ENSFALG00000024970	STIM2 (ENSFALG00000009145)	TBC1D19 (ENSFALG00000009147)	CCKAR (ENSFALG00000009150)	RBPJ (ENSFALG00000028202)	SMIM20 (ENSFALG00000009156)	SEL1L3 (ENSFALG00000009157)	ENSFALG00000009167	ANAPC4 (ENSFALG00000009180)	PI4K2B (ENSFALG00000009183)	SEPSECS (ENSFALG00000009193)	LGI2 (ENSFALG00000024523)	CCDC149 (ENSFALG00000009207)	SOD3 (ENSFALG00000014662)	DHX15 (ENSFALG00000009210)	PPARGC1A (ENSFALG00000009211) #22	ADGRA3 (ENSFALG00000009212) #24	KCNIP4 (ENSFALG00000009214)	PACRGL (ENSFALG00000009221)	SLIT2 (ENSFALG00000009223)	LCORL (ENSFALG00000009227)	NCAPG (ENSFALG00000009232)	FAM184B (ENSFALG00000009234)	MED28 (ENSFALG00000009238)	LAP3 (ENSFALG00000009242)	CLRN2 (ENSFALG00000028197)	QDPR (ENSFALG00000027910)	ENSFALG00000009259	ENSFALG00000023317	TAPT1 (ENSFALG00000009267)	PROM1 (ENSFALG00000009278)
Great tit	MODERN SPECIES	23	ENSPMJG00000016294	STIM2 (ENSPMJG00000016298)	TBC1D19 (ENSPMJG00000016299)	CCKAR (ENSPMJG00000016300)	RBPJ (ENSPMJG00000016301)	SMIM20 (ENSPMJG00000016303)	SEL1L3 (ENSPMJG00000016304)	ENSPMJG00000016305	ANAPC4 (ENSPMJG00000016306)	ZCCHC4 (ENSPMJG00000016307)	PI4K2B (ENSPMJG00000016308)	LGI2 (ENSPMJG00000016309)	CCDC149 (ENSPMJG00000016310)	SOD3 (ENSPMJG00000016311)	DHX15 (ENSPMJG00000016312)	PPARGC1A (ENSPMJG00000016314) #22	ADGRA3 (ENSPMJG00000016320) #24	KCNIP4 (ENSPMJG00000016323)	PACRGL (ENSPMJG00000016324)	SLIT2 (ENSPMJG00000016326)	LCORL (ENSPMJG00000016341)	NCAPG (ENSPMJG00000016343)	FAM184B (ENSPMJG00000016345)	MED28 (ENSPMJG00000016346)	LAP3 (ENSPMJG00000016347)	CLRN2 (ENSPMJG00000016348)	QDPR (ENSPMJG00000016349)	LDB2 (ENSPMJG00000016350)	TAPT1 (ENSPMJG00000016351)	PROM1 (ENSPMJG00000016354)	FGFBP2 (ENSPMJG00000016358)
African ostrich	MODERN SPECIES	548	PCDH7 (ENSSCUG00000006563)	STIM2 (ENSSCUG00000006544)	TBC1D19 (ENSSCUG00000006542)	CCKAR (ENSSCUG00000006541)	RBPJ (ENSSCUG00000006539)	SEL1L3 (ENSSCUG00000006536)	ENSSCUG00000006534	ANAPC4 (ENSSCUG00000006515)	ZCCHC4 (ENSSCUG00000006498)	PI4K2B (ENSSCUG00000006495)	SEPSECS (ENSSCUG00000006488)	LGI2 (ENSSCUG00000006480)	CCDC149 (ENSSCUG00000006474)	SOD3 (ENSSCUG00000006470)	DHX15 (ENSSCUG00000006468)	PPARGC1A (ENSSCUG00000006459) #22	GBA3 (ENSSCUG00000006451) #23	ADGRA3 (ENSSCUG00000006446) #24	KCNIP4 (ENSSCUG00000006432)	PACRGL (ENSSCUG00000006427)	SLIT2 (ENSSCUG00000006422)	LCORL (ENSSCUG00000006417)	NCAPG (ENSSCUG00000006416)	FAM184B (ENSSCUG00000006414)	MED28 (ENSSCUG00000006413)	LAP3 (ENSSCUG00000006410)	CLRN2 (ENSSCUG00000006409)	QDPR (ENSSCUG00000006408)	LDB2 (ENSSCUG00000006404)	TAPT1 (ENSSCUG00000006387)	PROM1 (ENSSCUG00000006375)
Australian saltwater crocodile	MODERN SPECIES	65	TBC1D19 (ENSCPRG00005005240)	CCKAR (ENSCPRG00005005217)	RBPJ (ENSCPRG00005005213)	SMIM20 (ENSCPRG00005005197)	SEL1L3 (ENSCPRG00005005084)	ENSCPRG00005005064	ANAPC4 (ENSCPRG00005005005)	ZCCHC4 (ENSCPRG00005004986)	PI4K2B (ENSCPRG00005004981)	SEPSECS (ENSCPRG00005004978)	LGI2 (ENSCPRG00005004932)	CCDC149 (ENSCPRG00005004911)	SOD3 (ENSCPRG00005004903)	DHX15 (ENSCPRG00005004902)	ENSCPRG00005004898	PPARGC1A (ENSCPRG00005004873) #22	ADGRA3 (ENSCPRG00005004846) #24	ENSCPRG00005004791	KCNIP4 (ENSCPRG00005004785)	PACRGL (ENSCPRG00005004777)	SLIT2 (ENSCPRG00005004729)	LCORL (ENSCPRG00005004691)	NCAPG (ENSCPRG00005004674)	FAM184B (ENSCPRG00005004659)	MED28 (ENSCPRG00005004651)	LAP3 (ENSCPRG00005004478)	CLRN2 (ENSCPRG00005004449)	QDPR (ENSCPRG00005004440)	LDB2 (ENSCPRG00005004419)	ENSCPRG00005004389	TAPT1 (ENSCPRG00005004379)
Cryptodira	ANCESTRAL SPECIES	2	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Testudinoidea	ANCESTRAL SPECIES	10	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Emydidae	ANCESTRAL SPECIES	1	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Three-toed box turtle	MODERN SPECIES	26	STIM2 (ENSTMTG00000002059)	TBC1D19 (ENSTMTG00000002117)	CCKAR (ENSTMTG00000002168)	RBPJ (ENSTMTG00000002176)	ENSTMTG00000002188	SEL1L3 (ENSTMTG00000002230)	ENSTMTG00000002359	ANAPC4 (ENSTMTG00000002376)	ZCCHC4 (ENSTMTG00000002410)	PI4K2B (ENSTMTG00000002417)	SEPSECS (ENSTMTG00000002424)	LGI2 (ENSTMTG00000002426)	CCDC149 (ENSTMTG00000002431)	SOD3 (ENSTMTG00000002436)	DHX15 (ENSTMTG00000002439)	PPARGC1A (ENSTMTG00000002447) #22	GBA3 (ENSTMTG00000002452) #23	ADGRA3 (ENSTMTG00000002458) #24	KCNIP4 (ENSTMTG00000002466)	ENSTMTG00000002473	SLIT2 (ENSTMTG00000002651)	ENSTMTG00000005401	LCORL (ENSTMTG00000005413)	NCAPG (ENSTMTG00000005492)	FAM184B (ENSTMTG00000006529)	MED28 (ENSTMTG00000006560)	LAP3 (ENSTMTG00000006569)	CLRN2 (ENSTMTG00000006597)	QDPR (ENSTMTG00000006607)	LDB2 (ENSTMTG00000006627)	TAPT1 (ENSTMTG00000006647)
painted turtle	MODERN SPECIES	15	STIM2 (ENSCPBG00000027991)	TBC1D19 (ENSCPBG00000027982)	CCKAR (ENSCPBG00000027976)	RBPJ (ENSCPBG00000027973)	SMIM20 (ENSCPBG00000027970)	SEL1L3 (ENSCPBG00000027969)	ENSCPBG00000027967	ANAPC4 (ENSCPBG00000027964)	ZCCHC4 (ENSCPBG00000027961)	PI4K2B (ENSCPBG00000027959)	SEPSECS (ENSCPBG00000027958)	LGI2 (ENSCPBG00000027955)	CCDC149 (ENSCPBG00000027952)	SOD3 (ENSCPBG00000027950)	DHX15 (ENSCPBG00000027946)	PPARGC1A (ENSCPBG00000027936) #22	GBA3 (ENSCPBG00000027931) #23	ADGRA3 (ENSCPBG00000027926) #24	KCNIP4 (ENSCPBG00000027922)	PACRGL (ENSCPBG00000027917)	SLIT2 (ENSCPBG00000027876)	CORIN (ENSCPBG00000027875)	ATP10D (ENSCPBG00000027872)	COMMD8 (ENSCPBG00000027871)	ENSCPBG00000027869	GABRA4 (ENSCPBG00000027868)	GABRA2 (ENSCPBG00000027867)	GABRG1 (ENSCPBG00000027866)	ENSCPBG00000027865	ENSCPBG00000027863	UNC45B (ENSCPBG00000027851)
Testudinidae	ANCESTRAL SPECIES	11	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Abingdon island giant tortoise	MODERN SPECIES	1897															DHX15 (ENSCABG00000023140)	PPARGC1A (ENSCABG00000023141) #22	GBA3 (ENSCABG00000023142) #23	ADGRA3 (ENSCABG00000023143) #24
Goode s thornscrub tortoise	MODERN SPECIES	19	STIM2 (ENSGEVG00005018809)	TBC1D19 (ENSGEVG00005018764)	CCKAR (ENSGEVG00005018734)	RBPJ (ENSGEVG00005018699)	SMIM20 (ENSGEVG00005018677)	SEL1L3 (ENSGEVG00005018390)	ENSGEVG00005018253	ANAPC4 (ENSGEVG00005018145)	ZCCHC4 (ENSGEVG00005018084)	PI4K2B (ENSGEVG00005018044)	SEPSECS (ENSGEVG00005018007)	LGI2 (ENSGEVG00005017978)	CCDC149 (ENSGEVG00005017958)	SOD3 (ENSGEVG00005017946)	DHX15 (ENSGEVG00005017920)	PPARGC1A (ENSGEVG00005017736) #22	GBA3 (ENSGEVG00005017692) #23	ENSGEVG00005017685	ADGRA3 (ENSGEVG00005017643) #24	KCNIP4 (ENSGEVG00005017568)	PACRGL (ENSGEVG00005017545)	SLIT2 (ENSGEVG00005017408)	LCORL (ENSGEVG00005017290)	NCAPG (ENSGEVG00005017190)	FAM184B (ENSGEVG00005017032)	MED28 (ENSGEVG00005017002)	LAP3 (ENSGEVG00005016970)	CLRN2 (ENSGEVG00005016931)	QDPR (ENSGEVG00005016893)	LDB2 (ENSGEVG00005016780)	TAPT1 (ENSGEVG00005016748)
Chinese turtle	MODERN SPECIES	2222	CCKAR (ENSPSIG00000016827)	RBPJ (ENSPSIG00000016822)	SMIM20 (ENSPSIG00000016781)	ENSPSIG00000000844	ENSPSIG00000016650	ENSPSIG00000016641	ENSPSIG00000016305	ANAPC4 (ENSPSIG00000015647)	ZCCHC4 (ENSPSIG00000015625)	PI4K2B (ENSPSIG00000015479)	SEPSECS (ENSPSIG00000014906)	LGI2 (ENSPSIG00000014639)	CCDC149 (ENSPSIG00000014502)	SOD3 (ENSPSIG00000014347)	DHX15 (ENSPSIG00000013524)	PPARGC1A (ENSPSIG00000011790) #22	GBA3 (ENSPSIG00000011741) #23	ADGRA3 (ENSPSIG00000010975) #24	ENSPSIG00000000521	ENSPSIG00000010673
Lepidosauria	ANCESTRAL SPECIES	9	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Episquamata	ANCESTRAL SPECIES	3	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Toxicofera	ANCESTRAL SPECIES	21	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT01040000242873	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES	22	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Elapidae_a	ANCESTRAL SPECIES	25	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.k.a	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154372.a.b	ENSGT00530000063586.b	ENSGT00390000010628	ENSGT00390000005639.a.a	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00390000001577	ENSGT00940000154965.B	ENSGT00940000162414
Eastern brown snake	MODERN SPECIES	12	RGS12 (ENSPTXG00000014789)	DOK7 (ENSPTXG00000014785)	HMX1 (ENSPTXG00000014784)	CPZ (ENSPTXG00000014577)	SEL1L3 (ENSPTXG00000014557)	ENSPTXG00000014555	ENSPTXG00000014553	ZCCHC4 (ENSPTXG00000014551)	PI4K2B (ENSPTXG00000014547)	SEPSECS (ENSPTXG00000014544)	LGI2 (ENSPTXG00000014385)	CCDC149 (ENSPTXG00000014377)	SOD3 (ENSPTXG00000014375)	ENSPTXG00000014369	ENSPTXG00000014365 #22	ENSPTXG00000014363 #22	ADGRA3 (ENSPTXG00000014357) #24	KCNIP4 (ENSPTXG00000014352)	PACRGL (ENSPTXG00000014280)	SLIT2 (ENSPTXG00000003109)	FGFBP1 (ENSPTXG00000003001)	PROM1 (ENSPTXG00000002997)	TAPT1 (ENSPTXG00000002993)	LDB2 (ENSPTXG00000002989)	QDPR (ENSPTXG00000002987)	CLRN2 (ENSPTXG00000002986)	LAP3 (ENSPTXG00000002984)	MED28 (ENSPTXG00000002981)	ENSPTXG00000002978	LCORL (ENSPTXG00000002973)	ENSPTXG00000002971
Mainland tiger snake	MODERN SPECIES	108																PPARGC1A (ENSNSUG00000010610) #22	ADGRA3 (ENSNSUG00000010618) #24	KCNIP4 (ENSNSUG00000010661)	ENSNSUG00000010662	SLIT2 (ENSNSUG00000010664)	FGFBP1 (ENSNSUG00000010670)	PROM1 (ENSNSUG00000010676)	TAPT1 (ENSNSUG00000010687)	LDB2 (ENSNSUG00000010926)	QDPR (ENSNSUG00000010929)	CLRN2 (ENSNSUG00000010930)	LAP3 (ENSNSUG00000010931)	MED28 (ENSNSUG00000010932)	ENSNSUG00000010933	ENSNSUG00000010934	ENSNSUG00000010935
Indian cobra	MODERN SPECIES	3	HTT (ENSNNAG00000015459)	MSANTD1 (ENSNNAG00000015260)	RGS12 (ENSNNAG00000015161)	DOK7 (ENSNNAG00000015066)	HMX1 (ENSNNAG00000015026)	CPZ (ENSNNAG00000015015)	ENSNNAG00000014962	ZCCHC4 (ENSNNAG00000014948)	PI4K2B (ENSNNAG00000014852)	SEPSECS (ENSNNAG00000014821)	LGI2 (ENSNNAG00000014722)	CCDC149 (ENSNNAG00000014613)	SOD3 (ENSNNAG00000014595)	DHX15 (ENSNNAG00000014577)	ENSNNAG00000014553	PPARGC1A (ENSNNAG00000014522) #22	ADGRA3 (ENSNNAG00000014236) #24	KCNIP4 (ENSNNAG00000014013)	PACRGL (ENSNNAG00000013981)	SLIT2 (ENSNNAG00000013901)	LDB2 (ENSNNAG00000013877)	QDPR (ENSNNAG00000013862)	CLRN2 (ENSNNAG00000013834)	LAP3 (ENSNNAG00000013792)	MED28 (ENSNNAG00000013760)	NCAPG (ENSNNAG00000013717)	ENSNNAG00000013685	ENSNNAG00000013522	PALLD (ENSNNAG00000012120)	CBR4 (ENSNNAG00000012002)	SH3RF1 (ENSNNAG00000011951)
Elapidae	ANCESTRAL SPECIES	22	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Elapidae_a	ANCESTRAL SPECIES	25	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402
Acanthophiinae	ANCESTRAL SPECIES	4	ENSGT00940000159778	ENSGT00940000159741	ENSGT00390000015386	ENSGT00940000162580	ENSGT00940000156391	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.k.a	ENSGT00950000183137.b.a.c.b #22	ENSGT00950000183137.b.a.c.a #22	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000154372.a.b	ENSGT00530000063586.b	ENSGT00390000010628	ENSGT00390000005639.a.a	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00390000001577	ENSGT00940000154965.B
Eastern brown snake	MODERN SPECIES	12	HGFAC (ENSPTXG00000014791)	RGS12 (ENSPTXG00000014789)	DOK7 (ENSPTXG00000014785)	HMX1 (ENSPTXG00000014784)	CPZ (ENSPTXG00000014577)	SEL1L3 (ENSPTXG00000014557)	ENSPTXG00000014555	ENSPTXG00000014553	ZCCHC4 (ENSPTXG00000014551)	PI4K2B (ENSPTXG00000014547)	SEPSECS (ENSPTXG00000014544)	LGI2 (ENSPTXG00000014385)	CCDC149 (ENSPTXG00000014377)	SOD3 (ENSPTXG00000014375)	ENSPTXG00000014369	ENSPTXG00000014365 #22	ENSPTXG00000014363 #22	ADGRA3 (ENSPTXG00000014357) #24	KCNIP4 (ENSPTXG00000014352)	PACRGL (ENSPTXG00000014280)	SLIT2 (ENSPTXG00000003109)	FGFBP1 (ENSPTXG00000003001)	PROM1 (ENSPTXG00000002997)	TAPT1 (ENSPTXG00000002993)	LDB2 (ENSPTXG00000002989)	QDPR (ENSPTXG00000002987)	CLRN2 (ENSPTXG00000002986)	LAP3 (ENSPTXG00000002984)	MED28 (ENSPTXG00000002981)	ENSPTXG00000002978	LCORL (ENSPTXG00000002973)
Elapidae	ANCESTRAL SPECIES																	ENSGT00950000183137.b.a.d #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00950000183137.b.a.d #22
Blue-lipped sea krait	MODERN SPECIES	4966																ENSLLTG00000016205 #22
Lizard	MODERN SPECIES	4	ENSACAG00000045555	TBC1D22A (ENSACAG00000004028)	CERK (ENSACAG00000004135)	GRAMD4 (ENSACAG00000004218)	ENSACAG00000044432	KLB (ENSACAG00000007623)	RFC1 (ENSACAG00000007579)	WDR19 (ENSACAG00000007508)	KLHL5 (ENSACAG00000007412)	CCDC149 (ENSACAG00000000382)	ENSACAG00000000410	DHX15 (ENSACAG00000000412)	ENSACAG00000041740	ENSACAG00000028853	ENSACAG00000035171	PPARGC1A (ENSACAG00000000741) #22	GBA3 (ENSACAG00000001008) #23	ADGRA3 (ENSACAG00000001047) #24	ENSACAG00000035774	ENSACAG00000039647	KCNIP4 (ENSACAG00000001279)	ENSACAG00000038554	ENSACAG00000044078	ENSACAG00000040215	PACRGL (ENSACAG00000001294)	SLIT2 (ENSACAG00000001304)	ENSACAG00000044681	ENSACAG00000042769	NCAPG (ENSACAG00000002066)	ENSACAG00000044171	FAM184B (ENSACAG00000011063)
Laterata	ANCESTRAL SPECIES	21	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a	ENSGT00390000010628	ENSGT00530000063586.b
Argentine black and white tegu	MODERN SPECIES	1	STIM2 (ENSSMRG00000001982)	TBC1D19 (ENSSMRG00000001948)	CCKAR (ENSSMRG00000001920)	RBPJ (ENSSMRG00000001903)	SMIM20 (ENSSMRG00000001898)	SEL1L3 (ENSSMRG00000001883)	ENSSMRG00000001828	ANAPC4 (ENSSMRG00000001814)	ZCCHC4 (ENSSMRG00000001737)	PI4K2B (ENSSMRG00000001725)	SEPSECS (ENSSMRG00000001718)	LGI2 (ENSSMRG00000001701)	CCDC149 (ENSSMRG00000001694)	SOD3 (ENSSMRG00000001656)	DHX15 (ENSSMRG00000001639)	PPARGC1A (ENSSMRG00000001615) #22	GBA3 (ENSSMRG00000001542) #23	ADGRA3 (ENSSMRG00000001520) #24	KCNIP4 (ENSSMRG00000001469)	PACRGL (ENSSMRG00000001371)	SLIT2 (ENSSMRG00000001324)	ENSSMRG00000000978	NCAPG (ENSSMRG00000000940)	FAM184B (ENSSMRG00000000763)	MED28 (ENSSMRG00000000730)	LAP3 (ENSSMRG00000000708)	CLRN2 (ENSSMRG00000000698)	QDPR (ENSSMRG00000000697)	LDB2 (ENSSMRG00000000662)	ENSSMRG00000000602	TAPT1 (ENSSMRG00000000542)
Common wall lizard	MODERN SPECIES	17	SEL1L3 (ENSPMRG00000013412)	ENSPMRG00000013390	ENSPMRG00000013386	ANAPC4 (ENSPMRG00000012834)	ZCCHC4 (ENSPMRG00000012751)	PI4K2B (ENSPMRG00000012743)	SEPSECS (ENSPMRG00000012735)	ENSPMRG00000012728	ENSPMRG00000012723	ENSPMRG00000012716	ENSPMRG00000012712	CCDC149 (ENSPMRG00000012672)	SOD3 (ENSPMRG00000012656)	ENSPMRG00000012650	DHX15 (ENSPMRG00000012637)	PPARGC1A (ENSPMRG00000012623) #22	ENSPMRG00000012618	GBA3 (ENSPMRG00000012612) #23	ADGRA3 (ENSPMRG00000012584) #24	ENSPMRG00000012574	KCNIP4 (ENSPMRG00000012569)	PACRGL (ENSPMRG00000012559)	SLIT2 (ENSPMRG00000012451)	ENSPMRG00000012414	ENSPMRG00000012409	ENSPMRG00000012397	NCAPG (ENSPMRG00000012378)	MED28 (ENSPMRG00000012369)	ENSPMRG00000012364	LAP3 (ENSPMRG00000012334)	ENSPMRG00000012315
tuatara	MODERN SPECIES	1248	FYTTD1 (ENSSPUG00000012549)	LRCH3 (ENSSPUG00000012579)	IQCG (ENSSPUG00000012714)	ENSSPUG00000012977	SMIM20 (ENSSPUG00000012981)	SEL1L3 (ENSSPUG00000013017)	ENSSPUG00000013223	ANAPC4 (ENSSPUG00000013251)	ZCCHC4 (ENSSPUG00000013292)	ENSSPUG00000013365	SEPSECS (ENSSPUG00000013376)	LGI2 (ENSSPUG00000013404)	CCDC149 (ENSSPUG00000013513)	SOD3 (ENSSPUG00000013526)	DHX15 (ENSSPUG00000013533)	PPARGC1A (ENSSPUG00000013556) #22	GBA3 (ENSSPUG00000013605) #23	ADGRA3 (ENSSPUG00000013618) #24
Anura	ANCESTRAL SPECIES	2	ENSGT00390000000214.a.b	ENSGT00390000015965	ENSGT01100000263563.c.b	ENSGT00390000005197.a	ENSGT00390000002398	ENSGT00940000159983	ENSGT00950000183177.b	ENSGT00390000004612	ENSGT00390000012556	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000165139	ENSGT00940000162414	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00980000201435.a.a.a	ENSGT00980000201435.a.a.b	ENSGT00980000201435.a.b	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b
Frog	MODERN SPECIES		cckar (ENSXETG00000000911)	rbpj (ENSXETG00000046629)	smim20 (ENSXETG00000043460)	sel1l3 (ENSXETG00000000947)	slc34a2 (ENSXETG00000000954)	anapc4 (ENSXETG00000000957)	zcchc4 (ENSXETG00000000960)	pi4k2b (ENSXETG00000000962)	ENSXETG00000020344	ENSXETG00000046969	sepsecs (ENSXETG00000002119)	lgi2 (ENSXETG00000002120)	ccdc149 (ENSXETG00000002121)	sod3 (ENSXETG00000002122)	dhx15 (ENSXETG00000002123)	ppargc1a (ENSXETG00000020468) #22	ENSXETG00000036897	or51e1 (ENSXETG00000020469) #23	adgra3 (ENSXETG00000020470) #24	kcnip4 (ENSXETG00000045139)	pacrgl (ENSXETG00000020472)	ENSXETG00000048458	slit2 (ENSXETG00000020473)	ENSXETG00000043650	lcorl (ENSXETG00000039970)	ENSXETG00000036171	ncapg (ENSXETG00000023826)	FAM184B (ENSXETG00000041368)	ENSXETG00000036945	ENSXETG00000035789	ENSXETG00000037544
Leishan spiny toad	MODERN SPECIES		SEL1L3 (ENSLLEG00000002464)	ENSLLEG00000002525	ENSLLEG00000002565	ANAPC4 (ENSLLEG00000002614)	ZCCHC4 (ENSLLEG00000002757)	PI4K2B (ENSLLEG00000002831)	SEPSECS (ENSLLEG00000002935)	LGI2 (ENSLLEG00000003012)	CCDC149 (ENSLLEG00000003067)	SOD3 (ENSLLEG00000003122)	DHX15 (ENSLLEG00000003148)	ENSLLEG00000003217	ENSLLEG00000003228	ENSLLEG00000003250	ENSLLEG00000003265	PPARGC1A (ENSLLEG00000003271) #22	ENSLLEG00000003299	ENSLLEG00000003306	ENSLLEG00000003311	GBA3 (ENSLLEG00000003323) #23	ADGRA3 (ENSLLEG00000003347) #24	ENSLLEG00000003418	ENSLLEG00000003425	ENSLLEG00000003429	KCNIP4 (ENSLLEG00000003440)	ENSLLEG00000003469	ENSLLEG00000003480	PACRGL (ENSLLEG00000003489)	ENSLLEG00000003502	SLIT2 (ENSLLEG00000003552)	ENSLLEG00000003712
Coelacanth	MODERN SPECIES	638											SEPSECS (ENSLACG00000001231)	LGI2 (ENSLACG00000004097)	CCDC149 (ENSLACG00000004919)	SOD3 (ENSLACG00000006218)	DHX15 (ENSLACG00000007225)	PPARGC1A (ENSLACG00000014054) #22	GBA3 (ENSLACG00000015881) #23
Actinopterygii	ANCESTRAL SPECIES	20						ENSGT00390000012556	ENSGT00940000168370	ENSGT00940000164655	ENSGT00390000010434.a	ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00940000159756	ENSGT00940000158402	ENSGT00940000162414	ENSGT00940000154965.B	ENSGT00390000001577	ENSGT00530000063669.a	ENSGT00390000013015	ENSGT00390000006192	ENSGT00530000063255.B	ENSGT00850000132319.a.a.b	ENSGT00390000000470	ENSGT00390000005639.a.a
Neopterygii	ANCESTRAL SPECIES	259										ENSGT00390000007332	ENSGT00940000157294	ENSGT00390000015958	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a	ENSGT00950000183027.b	ENSGT00940000156337
Osteoglossocephalai	ANCESTRAL SPECIES	261							ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000157294.c	ENSGT00390000015958.c	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.b	ENSGT00950000183027.b.a	ENSGT00940000156337.d	ENSGT00800000124172.j
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	103	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a.e	ENSGT00390000014293.a.g	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a	ENSGT00390000007332	ENSGT00940000157294.d.a	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000155800.a.b.a	ENSGT00950000183137.b.a.e #22	ENSGT00940000160460 #23	ENSGT00940000157235.g #24
P. kingsleyae	MODERN SPECIES	273							vstm2a (ENSPKIG00000004322)	HECW1 (ENSPKIG00000004204)	stk17a (ENSPKIG00000004154)	trmt10a (ENSPKIG00000004059)	C4orf54 (ENSPKIG00000004041)	sepsecs (ENSPKIG00000003978)	lgi2a (ENSPKIG00000003923)	ccdc149a (ENSPKIG00000003869)	dhx15 (ENSPKIG00000003730)	PPARGC1A (ENSPKIG00000003643) #22	gba3 (ENSPKIG00000003613) #23	ADGRA3 (ENSPKIG00000003579) #24
Asian bonytongue	MODERN SPECIES	20	ENSSFOG00015019048	ACO1 (ENSSFOG00015018941)	frem1a (ENSSFOG00015018913)	ENSSFOG00015018901	tspan5a (ENSSFOG00015018876)	RAP1GDS1 (ENSSFOG00015018811)	slc1a1 (ENSSFOG00015018753)	spata6l (ENSSFOG00015018726)	trmt10a (ENSSFOG00015018710)	ENSSFOG00015018699	sepsecs (ENSSFOG00015030052)	lgi2a (ENSSFOG00015018648)	ENSSFOG00015025930	ccdc149a (ENSSFOG00015018593)	dhx15 (ENSSFOG00015018549)	PPARGC1A (ENSSFOG00015018522) #22	gba3 (ENSSFOG00015018516) #23	ADGRA3 (ENSSFOG00015018468) #24	KCNIP4 (ENSSFOG00015018405)	ENSSFOG00015018368	SYNPO2 (ENSSFOG00015032764)	myoz2a (ENSSFOG00015018331)	USP53 (ENSSFOG00015018293)	ENSSFOG00015029766	FABP2 (ENSSFOG00015029809)	DMRTA1 (ENSSFOG00015029453)	elavl2 (ENSSFOG00015027679)	CAAP1 (ENSSFOG00015030065)	PTPRD (ENSSFOG00015018170)	TYRP1 (ENSSFOG00015018063)	LURAP1L (ENSSFOG00015031107)
Osteoglossiformes	ANCESTRAL SPECIES	60	ENSGT00940000160246.b	ENSGT00940000158215.j	ENSGT00390000009819.a.a	ENSGT00940000154404.b.e.a	ENSGT00530000063926.a	ENSGT00940000155429.a.a.f	ENSGT00390000014293.a.h	ENSGT00940000155397.a.a.b	ENSGT00940000155397.a.a.a	ENSGT00390000011412	ENSGT00730000111645.b	ENSGT00940000157294.d.b	ENSGT00390000015958.c	ENSGT00940000162224	ENSGT00940000155800.a.b.b	ENSGT00950000183137.b.a.f #22	ENSGT00940000157235.h #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b.j	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00800000124172.i	ENSGT00940000160640	ENSGT00940000156823.e.g	ENSGT00510000047770.c.b	ENSGT00940000156823.e.h.b	ENSGT00390000017010	ENSGT00940000153617.D	ENSGT00940000155804.k.a	ENSGT00530000063790.b.g
P. kingsleyae	MODERN SPECIES	25	ENSPKIG00000003186	ENSPKIG00000003157	echs1 (ENSPKIG00000003138)	ENSPKIG00000003126	ENSPKIG00000003112	tspan5a (ENSPKIG00000003076)	RAP1GDS1 (ENSPKIG00000003021)	SLC1A1 (ENSPKIG00000002887)	SLC1A1 (ENSPKIG00000002771)	mttp (ENSPKIG00000002708)	C4orf54 (ENSPKIG00000002685)	lgi2a (ENSPKIG00000002649)	ccdc149b (ENSPKIG00000002620)	SOD3 (ENSPKIG00000002602)	dhx15 (ENSPKIG00000002577)	PPARGC1A (ENSPKIG00000002531) #22	ADGRA3 (ENSPKIG00000002480) #24	ENSPKIG00000002372	ENSPKIG00000002296	ENSPKIG00000002241	sec24d (ENSPKIG00000002201)	ENSPKIG00000002178	ENSPKIG00000002169	ENSPKIG00000002147	ENSPKIG00000002133	ENSPKIG00000002115	ENSPKIG00000002093	ENSPKIG00000002077	myoz2b (ENSPKIG00000002037)	ENSPKIG00000002000	fabp2 (ENSPKIG00000001969)
Asian bonytongue	MODERN SPECIES	7	rps6 (ENSSFOG00015002123)	ACER2 (ENSSFOG00015002097)	ENSSFOG00015002114	ENSSFOG00015002079	ENSSFOG00015002051	tspan5a (ENSSFOG00015030250)	RAP1GDS1 (ENSSFOG00015001923)	SLC1A1 (ENSSFOG00015001795)	SLC1A1 (ENSSFOG00015001787)	mttp (ENSSFOG00015001768)	C4orf54 (ENSSFOG00015001759)	lgi2a (ENSSFOG00015001715)	ccdc149b (ENSSFOG00015028556)	SOD3 (ENSSFOG00015001702)	dhx15 (ENSSFOG00015001653)	PPARGC1A (ENSSFOG00015001633) #22	ADGRA3 (ENSSFOG00015001554) #24	KCNIP4 (ENSSFOG00015001513)	sec24d (ENSSFOG00015001430)	ENSSFOG00015028177	myoz2b (ENSSFOG00015001358)	USP53 (ENSSFOG00015001304)	fabp2 (ENSSFOG00015001291)	ENSSFOG00015026817	elavl2 (ENSSFOG00015001257)	smc2 (ENSSFOG00015001137)	ecpas (ENSSFOG00015000926)	kdm4c (ENSSFOG00015000814)	PTPRD (ENSSFOG00015000700)	ENSSFOG00015000683	ENSSFOG00015000612
Clupeocephala	ANCESTRAL SPECIES	316									ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c
Otomorpha	ANCESTRAL SPECIES	145	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00730000110920.b.a.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a
Otophysi	ANCESTRAL SPECIES	50	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00730000110920.b.a.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00940000163587.a.b.b.e.a	ENSGT00950000183153.c.a.q
Characiphysae	ANCESTRAL SPECIES	19	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00730000110920.b.a.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00390000009210	ENSGT00940000166308
Channel catfish	MODERN SPECIES	26	adamtsl1 (ENSIPUG00000019767)	ENSIPUG00000019873	larp7 (ENSIPUG00000019886)	plin2 (ENSIPUG00000019925)	haus6 (ENSIPUG00000019938)	DENND4C (ENSIPUG00000019984)	acer2 (ENSIPUG00000020048)	ENSIPUG00000020070	ENSIPUG00000020076	ACO1 (ENSIPUG00000020088)	sepsecs (ENSIPUG00000020145)	lgi2 (ENSIPUG00000020178)	ENSIPUG00000020191	ccdc149a (ENSIPUG00000020203)	dhx15 (ENSIPUG00000020233)	PPARGC1A (ENSIPUG00000020313) #22	gba3 (ENSIPUG00000020346) #23	adgra3 (ENSIPUG00000020357) #24	kcnip4 (ENSIPUG00000020401)	sec24d (ENSIPUG00000020455)	SYNPO2 (ENSIPUG00000020468)	myoz2a (ENSIPUG00000020473)	ENSIPUG00000020482	ENSIPUG00000020510	ENSIPUG00000020520	ENSIPUG00000020532	ENSIPUG00000020539	vbp1 (ENSIPUG00000020555)	ENSIPUG00000020571	ENSIPUG00000020603	rab39b (ENSIPUG00000020833)
Characiphysae_b	ANCESTRAL SPECIES	18	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00730000110920.b.a.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000173396	ENSGT01030000234601.s	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b
Characoidei	ANCESTRAL SPECIES	9	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT00950000182920.b.a.b.a.a	ENSGT00390000008250	ENSGT00940000158215	ENSGT00730000110920.b.a.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000173396	ENSGT01030000234601.s	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b
Red-bellied piranha	MODERN SPECIES	224													ENSPNAG00000004804	ccdc149a (ENSPNAG00000010255)	dhx15 (ENSPNAG00000010321)	PPARGC1A (ENSPNAG00000010393) #22	gba3 (ENSPNAG00000010437) #23	ADGRA3 (ENSPNAG00000001403) #24	ENSPNAG00000001405	KCNIP4 (ENSPNAG00000010598)	sec24d (ENSPNAG00000010613)	SYNPO2 (ENSPNAG00000001422)	myoz2a (ENSPNAG00000001423)	USP53 (ENSPNAG00000010692)	frem1a (ENSPNAG00000010747)	ENSPNAG00000010756	tspan5a (ENSPNAG00000001444)	RAP1GDS1 (ENSPNAG00000001461)	slc1a1 (ENSPNAG00000010984)	spata6l (ENSPNAG00000011014)	gabarapb (ENSPNAG00000011021)
Mexicana tetra	MODERN SPECIES	7	spata6l (ENSAMXG00000013847)	slc1a1 (ENSAMXG00000043975)	ENSAMXG00000032033	RAP1GDS1 (ENSAMXG00000013835)	tspan5a (ENSAMXG00000040397)	ENSAMXG00000002335	frem1a (ENSAMXG00000002343)	USP53 (ENSAMXG00000002366)	myoz2a (ENSAMXG00000031405)	ENSAMXG00000030857	sec24d (ENSAMXG00000002393)	KCNIP4 (ENSAMXG00000002428)	ENSAMXG00000030994	ADGRA3 (ENSAMXG00000002446) #24	gba3 (ENSAMXG00000002452) #23	PPARGC1A (ENSAMXG00000002461) #22	ENSAMXG00000043979	ntn4 (ENSAMXG00000007434)	dock11 (ENSAMXG00000007450)	il13ra1 (ENSAMXG00000007475)	ENSAMXG00000044091	ENSAMXG00000029236	il13ra1 (ENSAMXG00000030064)	kirrel1a (ENSAMXG00000011544)	ndufs2 (ENSAMXG00000039771)	fcer1g (ENSAMXG00000030191)	hacd4 (ENSAMXG00000037245)	FOCAD (ENSAMXG00000011494)	mllt3 (ENSAMXG00000038404)	ENSAMXG00000037906	trmt10a (ENSAMXG00000040069)
Electric eel	MODERN SPECIES	233													ENSEEEG00000004146	dhx15 (ENSEEEG00000003913)	ENSEEEG00000003910	PPARGC1A (ENSEEEG00000003907) #22	gba3 (ENSEEEG00000003904) #23	KCNIP4 (ENSEEEG00000003883)	sec24d (ENSEEEG00000002150)	SYNPO2 (ENSEEEG00000002124)	myoz2a (ENSEEEG00000002112)	USP53 (ENSEEEG00000002109)	frem1a (ENSEEEG00000002103)
Cyprinoidei	ANCESTRAL SPECIES	41	ENSGT00940000154982.c	ENSGT01030000234633.B.a.c	ENSGT00390000006950	ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00390000014786	ENSGT00730000110920.b.a.b.b	ENSGT00940000153289.a.a.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.A	ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00950000183153.c.a.r	ENSGT00940000160688
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	188	ENSGT00950000183154.b.a.b	ENSGT00390000014786	ENSGT00730000110920.b.a.b.b.a.a	ENSGT00940000154404.b.i.a	ENSGT00940000153289.a.a.b.a	ENSGT00730000110920.b.a.b.b.a.b	ENSGT00940000154404.b.i.b	ENSGT00940000153289.a.a.b.b	ENSGT00940000157772	ENSGT00390000007332	ENSGT00940000157294.d.k.a	ENSGT00940000165054.A.a	ENSGT00390000015958.d	ENSGT00940000162224.g.a	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a.g #22	ENSGT00940000160460.b #23	ENSGT00940000157235.j #24	ENSGT00940000158985.r.b.b	ENSGT00950000182924.A.b.a.b.d	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000183027.b.b.h	ENSGT00940000156337.c.c	ENSGT00940000156337.c.d	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a.c.b	ENSGT00940000161376	ENSGT00390000014293.a.e.a.b	ENSGT00940000155397.a.b.b	ENSGT00530000063821.b.b
Goldfish	MODERN SPECIES	25	lrp4 (ENSCARG00000026352)	cacnb2a (ENSCARG00000022899)	ENSCARG00000022801	SMCHD1 (ENSCARG00000022493)	METTL4 (ENSCARG00000022455)	adcyap1a (ENSCARG00000022450)	ppp1r15a (ENSCARG00000022446)	ENSCARG00000022435	ENSCARG00000022429	ACO1 (ENSCARG00000022132)	ENSCARG00000022114	sepsecs (ENSCARG00000021929)	lgi2a (ENSCARG00000021878)	ccdc149a (ENSCARG00000021766)	dhx15 (ENSCARG00000021356)	PPARGC1A (ENSCARG00000020917) #22	ADGRA3 (ENSCARG00000020576) #24	ENSCARG00000020551	cdh11 (ENSCARG00000020379)	ENSCARG00000020346	CDH8 (ENSCARG00000019299)	ENSCARG00000019240	ADAMTS18 (ENSCARG00000019119)	ENSCARG00000019102	PHKB (ENSCARG00000018873)	ITFG1 (ENSCARG00000018805)	NETO2 (ENSCARG00000018776)	dnaja2a (ENSCARG00000018728)	gpt2 (ENSCARG00000016369)	zgc:92818 (ENSCARG00000016292)	mylk3 (ENSCARG00000016238)
Cyprininae_a	ANCESTRAL SPECIES	141	ENSGT00730000110920.b.a.b.b.a.a	ENSGT00940000154404.b.i.a	ENSGT00940000153289.a.a.b.a	ENSGT00940000153289.a.a.b.b	ENSGT00940000157772	ENSGT00390000007332.g	ENSGT00940000157294.d.k.a	ENSGT00940000165054.A.a.a	ENSGT00390000007332.h	ENSGT00940000157294.d.k.b	ENSGT00940000165054.A.b	ENSGT00940000165054.A.a.b	ENSGT00390000015958.d	ENSGT00940000162224.g.b	ENSGT00940000155800.a.b.o	ENSGT00950000183137.b.a.g #22	ENSGT00940000160460.b #23	ENSGT00940000157235.j #24	ENSGT00940000158985.r.b.b	ENSGT00950000182924.A.b.a.b.d	ENSGT00950000183054.a.a.a.a.c	ENSGT00950000183027.b.b.h	ENSGT00940000156337.c.c	ENSGT00940000156337.c.d	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a.c.b	ENSGT00390000014293.a.e.a.b	ENSGT00940000155397.a.b.b	ENSGT00530000063821.b.b	ENSGT00940000166995.g
Common carp reference	MODERN SPECIES	6	ENSCCRG00000066462	ENSCCRG00000064777	ppp1r15a (ENSCCRG00000076631)	ENSCCRG00000053263	ENSCCRG00000016223	sepsecs (ENSCCRG00000048219)	lgi2a (ENSCCRG00000005289)	ENSCCRG00000004568	sod3a (ENSCCRG00000061811)	ENSCCRG00000056492	sod3a (ENSCCRG00000048918)	sod3a (ENSCCRG00000066357)	ENSCCRG00000069927	dhx15 (ENSCCRG00000003352)	ENSCCRG00000080132	PPARGC1A (ENSCCRG00000031885) #22	gba3 (ENSCCRG00000055057) #23	ADGRA3 (ENSCCRG00000019901) #24	KCNIP4 (ENSCCRG00000076448)	sec24d (ENSCCRG00000081935)	SYNPO2 (ENSCCRG00000068057)	MYOZ2 (ENSCCRG00000082866)	USP53 (ENSCCRG00000074205)	frem1a (ENSCCRG00000031364)	tspan5a (ENSCCRG00000043468)	ENSCCRG00000033631	slc1a1 (ENSCCRG00000042132)	ENSCCRG00000047549	ctdnep1b (ENSCCRG00000047601)	elp5 (ENSCCRG00000047596)	ENSCCRG00000071102
Golden-line barbel	MODERN SPECIES	704	ACER2 (ENSSGRG00000026645)	ppp1r15a (ENSSGRG00000026644)	ENSSGRG00000026643	ENSSGRG00000026642	ACO1 (ENSSGRG00000026557)	sepsecs (ENSSGRG00000026531)	lgi2a (ENSSGRG00000026529)	ENSSGRG00000026526	ENSSGRG00000026525	ccdc149a (ENSSGRG00000026479)	sod3a (ENSSGRG00000026472)	sod3a (ENSSGRG00000026471)	sod3a (ENSSGRG00000026470)	sod3a (ENSSGRG00000026468)	dhx15 (ENSSGRG00000026151)	PPARGC1A (ENSSGRG00000026144) #22
Cyprininae	ANCESTRAL SPECIES	858																ENSGT00950000183137.b.a.h #22	ENSGT00940000160460.a #23	ENSGT00940000157235.i #24	ENSGT00940000158985.r.b.a	ENSGT00950000182924.A.b.a.b.c	ENSGT00950000183054.a.a.a.a.d	ENSGT00950000183027.b.b.g
Goldfish	MODERN SPECIES	47	ENSCARG00000054374	ENSCARG00000054524	myl12.1 (ENSCARG00000054533)	MYOM1 (ENSCARG00000054786)	ENSCARG00000060513	SMCHD1 (ENSCARG00000060669)	adcyap1a (ENSCARG00000062847)	tyms (ENSCARG00000062865)	ACER2 (ENSCARG00000062899)	ppp1r15a (ENSCARG00000062920)	ENSCARG00000062925	lgi2a (ENSCARG00000062932)	ENSCARG00000062973	sod3a (ENSCARG00000063009)	dhx15 (ENSCARG00000063047)	PPARGC1A (ENSCARG00000063351) #22	ENSCARG00000063752	gba3 (ENSCARG00000063771) #23	ADGRA3 (ENSCARG00000063837) #24	KCNIP4 (ENSCARG00000064167)	sec24d (ENSCARG00000064536)	SYNPO2 (ENSCARG00000067787)	MYOZ2 (ENSCARG00000067791)	USP53 (ENSCARG00000067800)	frem1a (ENSCARG00000067826)	ENSCARG00000067878	ENSCARG00000067886	RAP1GDS1 (ENSCARG00000067961)	slc1a1 (ENSCARG00000068017)	spata6l (ENSCARG00000068068)	GABARAP (ENSCARG00000068082)
Cyprininae_a	ANCESTRAL SPECIES	619														ENSGT00940000162224.g.a	ENSGT00940000155800.a.b.p	ENSGT00950000183137.b.a.h #22	ENSGT00940000160460.a #23	ENSGT00940000157235.i #24	ENSGT00940000158985.r.b.a	ENSGT00950000182924.A.b.a.b.c	ENSGT00950000183054.a.a.a.a.d	ENSGT00950000183027.b.b.g
Common carp reference	MODERN SPECIES		myl12.1 (ENSCCRG00000029974)	MYOM1 (ENSCCRG00000044425)	ENSCCRG00000040510	SMCHD1 (ENSCCRG00000044629)	tyms (ENSCCRG00000048229)	ENSCCRG00000064784	ppp1r15a (ENSCCRG00000081796)	ENSCCRG00000016546	sepsecs (ENSCCRG00000045253)	lgi2a (ENSCCRG00000048217)	ENSCCRG00000076337	ENSCCRG00000043972	ccdc149a (ENSCCRG00000043977)	sod3a (ENSCCRG00000077543)	dhx15 (ENSCCRG00000072441)	PPARGC1A (ENSCCRG00000020738) #22	gba3 (ENSCCRG00000011902) #23	ADGRA3 (ENSCCRG00000024750) #24	KCNIP4 (ENSCCRG00000064572)	sec24d (ENSCCRG00000061858)	SYNPO2 (ENSCCRG00000068614)	MYOZ2 (ENSCCRG00000078569)	USP53 (ENSCCRG00000036700)	frem1a (ENSCCRG00000063078)	ENSCCRG00000069654	tspan5a (ENSCCRG00000065306)	ENSCCRG00000042149	slc1a1 (ENSCCRG00000047608)	spata6l (ENSCCRG00000047563)	ENSCCRG00000060838	ctdnep1b (ENSCCRG00000054342)
Golden-line barbel	MODERN SPECIES	299	myl12.1 (ENSSGRG00000030663)	MYOM1 (ENSSGRG00000030320)	ENSSGRG00000030310	SMCHD1 (ENSSGRG00000030256)	adcyap1a (ENSSGRG00000030240)	adcyap1a (ENSSGRG00000030233)	ENSSGRG00000030231	ppp1r15a (ENSSGRG00000030230)	ENSSGRG00000030229	ACO1 (ENSSGRG00000029950)	sepsecs (ENSSGRG00000029828)	lgi2a (ENSSGRG00000029827)	sod3a (ENSSGRG00000029823)	sod3a (ENSSGRG00000029821)	dhx15 (ENSSGRG00000029505)	PPARGC1A (ENSSGRG00000029480) #22	gba3 (ENSSGRG00000029478) #23	ADGRA3 (ENSSGRG00000029477) #24
Zebrafish	MODERN SPECIES	22	ENSDARG00000102178	SMCHD1 (ENSDARG00000104374)	METTL4 (ENSDARG00000088999)	adcyap1a (ENSDARG00000004015)	tyms (ENSDARG00000042894)	ACER2 (ENSDARG00000077782)	ppp1r15a (ENSDARG00000069135)	ENSDARG00000101240	ACO1 (ENSDARG00000026376)	sepsecs (ENSDARG00000033861)	lgi2a (ENSDARG00000111069)	ENSDARG00000087767	ccdc149a (ENSDARG00000078829)	sod3a (ENSDARG00000070168)	dhx15 (ENSDARG00000015392)	PPARGC1A (ENSDARG00000067829) #22	gba3 (ENSDARG00000031150) #23	ADGRA3 (ENSDARG00000073673) #24	KCNIP4 (ENSDARG00000088100)	sec24d (ENSDARG00000045946)	ENSDARG00000099032	myoz2a (ENSDARG00000012311)	USP53 (ENSDARG00000078615)	frem1a (ENSDARG00000069473)	ENSDARG00000105048	tspan5a (ENSDARG00000086033)	RAP1GDS1 (ENSDARG00000073741)	slc1a1 (ENSDARG00000020212)	spata6l (ENSDARG00000004874)	gabarapb (ENSDARG00000052082)	ctdnep1b (ENSDARG00000035781)
Clupeiformes	ANCESTRAL SPECIES	226													ENSGT00390000015958.d	ENSGT00940000162224	ENSGT00940000155800.a.b	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000156990	ENSGT00990000204039	ENSGT00940000155429.a.a	ENSGT00390000014293.a	ENSGT00940000155397.a.b	ENSGT00530000063821.b.b	ENSGT00530000063169.a	ENSGT00730000111645.a
Denticle herring	MODERN SPECIES		pip4p1b (ENSDCDG00000005370)	STK26 (ENSDCDG00000005372)	ENSDCDG00000005408	DACH2 (ENSDCDG00000005410)	cnpy3 (ENSDCDG00000005427)	trpc5a (ENSDCDG00000005428)	ENSDCDG00000005434	S100P (ENSDCDG00000005440)	ENSDCDG00000005442	kiaa0232 (ENSDCDG00000005443)	TBC1D14 (ENSDCDG00000005450)	ccl36.1 (ENSDCDG00000010498)	ccdc149a (ENSDCDG00000010527)	sod3a (ENSDCDG00000010631)	dhx15 (ENSDCDG00000010642)	PPARGC1A (ENSDCDG00000010686) #22	ADGRA3 (ENSDCDG00000010760) #24	gba3 (ENSDCDG00000010832) #23	KCNIP4 (ENSDCDG00000010857)	sec24d (ENSDCDG00000011172)	SYNPO2 (ENSDCDG00000018487)	MYOZ2 (ENSDCDG00000018492)	ENSDCDG00000018501	USP53 (ENSDCDG00000018506)	SYNPO2 (ENSDCDG00000018518)	ENSDCDG00000018519	frem1a (ENSDCDG00000018530)	ENSDCDG00000018547	tspan5a (ENSDCDG00000018556)	RAP1GDS1 (ENSDCDG00000018603)	slc1a1 (ENSDCDG00000018776)
Euteleosteomorpha	ANCESTRAL SPECIES	191						ENSGT00730000111880	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000153617.C.e.a	ENSGT00940000155804.k.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a
Protacanthopterygii	ANCESTRAL SPECIES	20	ENSGT00530000062962.b.b	ENSGT00730000111645.a	ENSGT00940000165285.f	ENSGT00530000063169.a	ENSGT00530000063821.b.b	ENSGT00940000155397.a.b	ENSGT00390000014293.a	ENSGT00940000161376	ENSGT00940000155429.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772	ENSGT00940000153289.a.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985.e	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00950000182886.a.b	ENSGT01090000260185.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	256						ENSGT00730000111645.a.d	ENSGT00940000155903.g.b	ENSGT00530000063652.a.a.b	ENSGT00940000156306.d	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000158006.a	ENSGT00550000074944.k	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i #22	ENSGT00940000157235.l #24	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.b.d	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a
Huchen	MODERN SPECIES	406					ENSHHUG00000009801	zdhhc21 (ENSHHUG00000009813)	plaa (ENSHHUG00000009821)	ENSHHUG00000009886	ENSHHUG00000009896	ACO1 (ENSHHUG00000009921)	ENSHHUG00000010046	ACER2 (ENSHHUG00000010064)	ENSHHUG00000010086	ENSHHUG00000010123	ENSHHUG00000010133	PPARGC1A (ENSHHUG00000010146) #22
Salmoninae_a	ANCESTRAL SPECIES	20	ENSGT00530000063169.a.r	ENSGT00940000165285.f	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00730000111645.a.d	ENSGT00940000155903.g.b	ENSGT00900000140979.a.a	ENSGT00530000063652.a.a.b	ENSGT00940000156306.d	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000158006.a	ENSGT00550000074944.k	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i #22	ENSGT00940000157235.l #24	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT01090000260185.a.b
Salmo	ANCESTRAL SPECIES	49	ENSGT00940000165285.f	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00730000111645.a.d	ENSGT00940000155903.g.b	ENSGT00900000140979.a.a	ENSGT00530000063652.a.a.b	ENSGT00940000156306.d	ENSGT00950000182866.D.d.a.c.a.i.b.a.a	ENSGT00950000182916.a.b.a.b.v	ENSGT00940000158006.a	ENSGT00550000074944.k	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i #22	ENSGT00940000157235.l #24	ENSGT00940000158985.e.a.a	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h
Atlantic salmon	MODERN SPECIES	26	H2AZ1 (ENSSSAG00000039934)	Ddit4l (ENSSSAG00000039999)	PPP3CA (ENSSSAG00000040278)	ENSSSAG00000057570	ENSSSAG00000057685	ENSSSAG00000062965	ENSSSAG00000062983	ENSSSAG00000063203	ENSSSAG00000086352	cj011 (ENSSSAG00000063292)	ENSSSAG00000097570	ENSSSAG00000096793	ENSSSAG00000091906	ENSSSAG00000063308	ENSSSAG00000106996	PPARGC1A (ENSSSAG00000063349) #22	ENSSSAG00000063507 #24	KCNIP4 (ENSSSAG00000092519)	sec24d (ENSSSAG00000002760)	SYNPO2 (ENSSSAG00000007715)	MYOZ2 (ENSSSAG00000102011)	USP53 (ENSSSAG00000007723)	ENSSSAG00000035522	ENSSSAG00000112123	PTPRD (ENSSSAG00000111433)	ENSSSAG00000076592	ci150 (ENSSSAG00000076598)	ENSSSAG00000076710	ENSSSAG00000078516	ENSSSAG00000079215	ENSSSAG00000101481
River trout	MODERN SPECIES	38	mllt3 (ENSSTUG00000035120)	H2AZ1 (ENSSTUG00000035152)	DDIT4L (ENSSTUG00000035157)	PPP3CA (ENSSTUG00000035269)	nxpe3 (ENSSTUG00000040174)	ENSSTUG00000040188	ENSSTUG00000040201	zdhhc21 (ENSSTUG00000040206)	plaa (ENSSTUG00000040217)	ACO1 (ENSSTUG00000040449)	ENSSTUG00000040588	ACER2 (ENSSTUG00000040611)	ENSSTUG00000040665	ENSSTUG00000040820	ENSSTUG00000040837	PPARGC1A (ENSSTUG00000040880) #22	ADGRA3 (ENSSTUG00000040967) #24	KCNIP4 (ENSSTUG00000041209)	ENSSTUG00000041307	sec24d (ENSSTUG00000041379)	SYNPO2 (ENSSTUG00000043865)	MYOZ2 (ENSSTUG00000043874)	USP53 (ENSSTUG00000043882)	PTPRD (ENSSTUG00000044156)	TYRP1 (ENSSTUG00000050648)	LURAP1L (ENSSTUG00000050649)	MPDZ (ENSSTUG00000050655)	ADGRL3 (ENSSTUG00000050737)	ENSSTUG00000051008	ENSSTUG00000051014	ENSSTUG00000030551
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00530000063169.a.r	ENSGT00940000165285.f	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00730000111645.a.d	ENSGT00940000155903.g.b	ENSGT00900000140979.a.a	ENSGT00530000063652.a.a.b	ENSGT00940000156306.d	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000158006.a	ENSGT00550000074944.k	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i #22	ENSGT00940000157235.l #24	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00940000154273.b.h.a
Rainbow trout	MODERN SPECIES	13	H2AZ1 (ENSOMYG00000028216)	ENSOMYG00000028197	ENSOMYG00000028176	PPP3CA (ENSOMYG00000026946)	ENSOMYG00000064361	ENSOMYG00000026434	ENSOMYG00000026400	ENSOMYG00000026017	ENSOMYG00000045963	ENSOMYG00000045951	ENSOMYG00000045949	ENSOMYG00000072861	ENSOMYG00000045941	ENSOMYG00000057396	ENSOMYG00000062329	PPARGC1A (ENSOMYG00000045926) #22	ENSOMYG00000045869 #24	ENSOMYG00000045831	KCNIP4 (ENSOMYG00000045813)	sec24d (ENSOMYG00000045731)	SYNPO2 (ENSOMYG00000045708)	MYOZ2 (ENSOMYG00000055798)	ENSOMYG00000025319	USP53 (ENSOMYG00000045689)	PTPRD (ENSOMYG00000044756)	TYRP1 (ENSOMYG00000044591)	LURAP1L (ENSOMYG00000044588)	MPDZ (ENSOMYG00000043957)	ENSOMYG00000034945	ENSOMYG00000033362	ENSOMYG00000033004
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00530000063169.a.r	ENSGT00940000165285.f	ENSGT00950000182774.b.a.b.a.b.a.b.a.a.a.a.a.a.b.a.a	ENSGT00730000111645.a.d	ENSGT00940000155903.g.b	ENSGT00900000140979.a.a.n.a	ENSGT00530000063652.a.a.b	ENSGT00940000156306.d	ENSGT00950000182916.a.b.a.b.u.a	ENSGT00940000158006.a	ENSGT00550000074944.k	ENSGT00940000157772.c	ENSGT00940000153289.a.a.b.c	ENSGT00940000165054.B	ENSGT00940000155800.b	ENSGT00950000183137.b.a.i #22	ENSGT00940000157235.l #24	ENSGT00940000158985.e.b	ENSGT00950000182924.A.b.a.b.h	ENSGT00950000183054.a.a.a.a.h	ENSGT00950000183027.b.b.e	ENSGT00940000156337.c.g	ENSGT00940000153617.B.h	ENSGT00940000155804.k.a.a	ENSGT00530000063790.b.d	ENSGT00940000155586.B.g.b	ENSGT00940000155527.j.a.e.a	ENSGT00940000154658.a.d	ENSGT00940000156022.a.c.b	ENSGT01090000260185.a.a	ENSGT00730000112044.e.a.b
Chinook salmon	MODERN SPECIES	6	PPP3CA (ENSOTSG00005047806)	NFIB (ENSOTSG00005047799)	zdhhc21 (ENSOTSG00005047798)	plaa (ENSOTSG00005047796)	ACO1 (ENSOTSG00005047791)	ENSOTSG00005047789	ACER2 (ENSOTSG00005047788)	ENSOTSG00005047787	ENSOTSG00005047786	ENSOTSG00005047785	ENSOTSG00005047784	cyp3a65 (ENSOTSG00005047783)	cyp3a65 (ENSOTSG00005047782)	cyp3a65 (ENSOTSG00005047781)	ENSOTSG00005047780 #22	PPARGC1A (ENSOTSG00005047779) #22	ADGRA3 (ENSOTSG00005047778) #24	KCNIP4 (ENSOTSG00005047776)	sec24d (ENSOTSG00005047761)	SYNPO2 (ENSOTSG00005047760)	MYOZ2 (ENSOTSG00005047759)	USP53 (ENSOTSG00005047758)	PTPRD (ENSOTSG00005033249)	TYRP1 (ENSOTSG00005033164)	LURAP1L (ENSOTSG00005033163)	MPDZ (ENSOTSG00005027964)	ENSOTSG00005027936	NEURL4 (ENSOTSG00005027659)	ENSOTSG00005027655	ENSOTSG00005027653	ndufs2 (ENSOTSG00005027463)
Coho salmon	MODERN SPECIES	29	TRMT10A (ENSOKIG00005008243)	ENSOKIG00005008227	ENSOKIG00005008214	ENSOKIG00005008202	MLLT3 (ENSOKIG00005008168)	ENSOKIG00005008127	DDIT4L (ENSOKIG00005008111)	PPP3CA (ENSOKIG00005003983)	NFIB (ENSOKIG00005003656)	ZDHHC21 (ENSOKIG00005003629)	plaa (ENSOKIG00005003581)	ACO1 (ENSOKIG00005003541)	ENSOKIG00005003521	ACER2 (ENSOKIG00005003511)	ENSOKIG00005003493	PPARGC1A (ENSOKIG00005003470) #22	ADGRA3 (ENSOKIG00005003387) #24	ENSOKIG00005003345	KCNIP4 (ENSOKIG00005003328)	sec24d (ENSOKIG00005002237)	SYNPO2 (ENSOKIG00005001919)	MYOZ2 (ENSOKIG00005001910)	USP53 (ENSOKIG00005001862)	ENSOKIG00005001836	ENSOKIG00005047144	PTPRD (ENSOKIG00005029261)	TYRP1 (ENSOKIG00005028467)	LURAP1L (ENSOKIG00005028452)	MPDZ (ENSOKIG00005022843)	ADGRL3 (ENSOKIG00005016342)	ENSOKIG00005016099
Salmoninae	ANCESTRAL SPECIES	269	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00940000155397.a.b.g	ENSGT00940000180421	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772.d	ENSGT00940000153289.a.a.b.d	ENSGT00940000163471.a.f	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j #22	ENSGT00940000160460 #23	ENSGT00940000157235.k #24	ENSGT00970000193500	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h
Huchen	MODERN SPECIES	153						ENSHHUG00000047356	ENSHHUG00000047360	srl (ENSHHUG00000047365)	ADCY9 (ENSHHUG00000047380)	CREBBP (ENSHHUG00000047389)	ENSHHUG00000047556	trap1 (ENSHHUG00000047559)	ENSHHUG00000047564	GDE1 (ENSHHUG00000047565)	ENSHHUG00000047567	PPARGC1A (ENSHHUG00000047574) #22	ENSHHUG00000047576	gba3 (ENSHHUG00000047578) #23	ADGRA3 (ENSHHUG00000047581) #24	ENSHHUG00000047649	KCNIP4 (ENSHHUG00000047651)	sec24d (ENSHHUG00000047666)	ENSHHUG00000048027	MYOZ2 (ENSHHUG00000048029)	USP53 (ENSHHUG00000048030)
Salmoninae_a	ANCESTRAL SPECIES	34	ENSGT00390000004438	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772.d	ENSGT00940000153289.a.a.b.d	ENSGT00940000163471.a.f	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j #22	ENSGT00940000160460 #23	ENSGT00940000157235.k #24	ENSGT00970000193500	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c	ENSGT01090000260185.b	ENSGT00940000156022.a.d
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	31	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000153289.a.a.b.d	ENSGT00940000154308.D.c.a.b.b.a.a.a.b.a.b	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.a.b.b.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j.a #22	ENSGT00940000160460 #23	ENSGT00940000157235.k #24	ENSGT00970000193500	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c
Rainbow trout	MODERN SPECIES	30	hacd4 (ENSOMYG00000002160)	ENSOMYG00000065315	ENSOMYG00000002143	ENSOMYG00000002125	ENSOMYG00000002116	slc1a1 (ENSOMYG00000002082)	ENSOMYG00000001988	tspan5a (ENSOMYG00000001867)	ENSOMYG00000001846	frem1a (ENSOMYG00000001711)	ENSOMYG00000001575	ENSOMYG00000001522	ENSOMYG00000058832	ccdc149a (ENSOMYG00000045481)	dhx15 (ENSOMYG00000045446)	PPARGC1A (ENSOMYG00000074575) #22	gba3 (ENSOMYG00000045420) #23	ADGRA3 (ENSOMYG00000045348) #24	ENSOMYG00000045316	KCNIP4 (ENSOMYG00000045307)	sec24d (ENSOMYG00000044726)	ENSOMYG00000044658	MYOZ2 (ENSOMYG00000044655)	USP53 (ENSOMYG00000044651)	ENSOMYG00000076736	ENSOMYG00000050015	PTPRD (ENSOMYG00000029183)	ENSOMYG00000025863	TYRP1 (ENSOMYG00000025839)	LURAP1L (ENSOMYG00000025827)	MPDZ (ENSOMYG00000022089)
Oncorhynchus_a	ANCESTRAL SPECIES	30	ENSGT00530000062962.b.b	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000161376	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000153289.a.a.b.d	ENSGT00940000154308.D.c.a.b.b.a.a.a.b.a.b	ENSGT01100000263495.A.a.b.b.a.a.b.b.b.b.b.b.a.b.a.a.a.b.b.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j.a #22	ENSGT00940000160460 #23	ENSGT00940000157235.k #24	ENSGT00970000193500	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00960000188752.b.a.a.b	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c
Chinook salmon	MODERN SPECIES	1	ENSOTSG00005047253	slc1a1 (ENSOTSG00005047237)	RAP1GDS1 (ENSOTSG00005047234)	tspan5a (ENSOTSG00005047233)	ENSOTSG00005047231	frem1a (ENSOTSG00005047230)	ENSOTSG00005047229	ENSOTSG00005047228	ENSOTSG00005047227	ENSOTSG00005047226	ENSOTSG00005047224	ENSOTSG00005047223	ENSOTSG00005047222	ccdc149a (ENSOTSG00005047219)	dhx15 (ENSOTSG00005047193)	PPARGC1A (ENSOTSG00005047184) #22	gba3 (ENSOTSG00005047182) #23	ADGRA3 (ENSOTSG00005047179) #24	ENSOTSG00005047174	KCNIP4 (ENSOTSG00005047173)	sec24d (ENSOTSG00005046997)	ENSOTSG00005046991	MYOZ2 (ENSOTSG00005046989)	USP53 (ENSOTSG00005046984)	PTPRD (ENSOTSG00005024026)	ENSOTSG00005023889	TYRP1 (ENSOTSG00005023884)	MPDZ (ENSOTSG00005015616)	cdk6 (ENSOTSG00005015574)	ADGRL3 (ENSOTSG00005008372)	ENSOTSG00005008304
Coho salmon	MODERN SPECIES	7	hacd4 (ENSOKIG00005025014)	C4orf54 (ENSOKIG00005025004)	trmt10a (ENSOKIG00005024987)	ENSOKIG00005024977	slc1a1 (ENSOKIG00005024458)	RAP1GDS1 (ENSOKIG00005024358)	ENSOKIG00005024316	ENSOKIG00005024300	frem1a (ENSOKIG00005023905)	ENSOKIG00005023830	ENSOKIG00005023822	ENSOKIG00005023813	ENSOKIG00005023779	ccdc149a (ENSOKIG00005023735)	dhx15 (ENSOKIG00005023620)	PPARGC1A (ENSOKIG00005023592) #22	ENSOKIG00005023589	ENSOKIG00005023583	gba3 (ENSOKIG00005023578) #23	ADGRA3 (ENSOKIG00005023469) #24	ENSOKIG00005023401	KCNIP4 (ENSOKIG00005023368)	sec24d (ENSOKIG00005018397)	SYNPO2 (ENSOKIG00005018225)	MYOZ2 (ENSOKIG00005018208)	USP53 (ENSOKIG00005018165)	PTPRD (ENSOKIG00005017112)	TYRP1 (ENSOKIG00005016952)	LURAP1L (ENSOKIG00005016940)	MPDZ (ENSOKIG00005010909)	ADGRL3 (ENSOKIG00005006122)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183137.b.a.j.b #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183137.b.a.j.b #22
Chinook salmon	MODERN SPECIES	6	DDIT4L (ENSOTSG00005047914)	PPP3CA (ENSOTSG00005047806)	NFIB (ENSOTSG00005047799)	zdhhc21 (ENSOTSG00005047798)	plaa (ENSOTSG00005047796)	ACO1 (ENSOTSG00005047791)	ENSOTSG00005047789	ACER2 (ENSOTSG00005047788)	ENSOTSG00005047787	ENSOTSG00005047786	ENSOTSG00005047785	ENSOTSG00005047784	cyp3a65 (ENSOTSG00005047783)	cyp3a65 (ENSOTSG00005047782)	cyp3a65 (ENSOTSG00005047781)	ENSOTSG00005047780 #22	PPARGC1A (ENSOTSG00005047779) #22	ADGRA3 (ENSOTSG00005047778) #24	KCNIP4 (ENSOTSG00005047776)	sec24d (ENSOTSG00005047761)	SYNPO2 (ENSOTSG00005047760)	MYOZ2 (ENSOTSG00005047759)	USP53 (ENSOTSG00005047758)	PTPRD (ENSOTSG00005033249)	TYRP1 (ENSOTSG00005033164)	LURAP1L (ENSOTSG00005033163)	MPDZ (ENSOTSG00005027964)	ENSOTSG00005027936	NEURL4 (ENSOTSG00005027659)	ENSOTSG00005027655	ENSOTSG00005027653
Salmo	ANCESTRAL SPECIES	18	ENSGT00730000111645.a.c	ENSGT00530000063169.a.q	ENSGT00990000214324	ENSGT00940000155397.a.b.g	ENSGT00390000014293.a.d	ENSGT00940000155429.a.a.a	ENSGT00990000204039	ENSGT00940000156990	ENSGT00940000157772.d	ENSGT00940000153289.a.a.b.d	ENSGT00940000154308.D.c.a.b.b.a.a.a.b.a.b	ENSGT00940000154308.D.c.a.b.a.a.a.a.a.b.a.a.a.a.a.a.b.b	ENSGT00940000154308.D.c.a.b.a.b.a.b.a.a.a.b	ENSGT00390000015958.d	ENSGT00940000155800.a.b.c	ENSGT00950000183137.b.a.j #22	ENSGT00940000160460 #23	ENSGT00940000157235.k #24	ENSGT00940000162818.c.a.g.b	ENSGT00940000158985.f	ENSGT00950000182924.A.b.a.b.g	ENSGT01060000248649	ENSGT00950000183054.a.a.a.a.g	ENSGT00950000183027.b.b.f	ENSGT00940000156337.c.h	ENSGT00940000153617.B.g	ENSGT00940000155804.k.a.b	ENSGT00530000063790.b.c	ENSGT00940000155586.B.g.a	ENSGT00940000155527.j.a.e.b	ENSGT00940000154658.a.c
River trout	MODERN SPECIES	35	trmt10a (ENSSTUG00000000926)	ENSSTUG00000000935	slc1a1 (ENSSTUG00000000964)	RAP1GDS1 (ENSSTUG00000001109)	tspan5a (ENSSTUG00000001228)	ENSSTUG00000001247	frem1a (ENSSTUG00000001292)	ACO1 (ENSSTUG00000001546)	ENSSTUG00000001695	ENSSTUG00000001697	ENSSTUG00000001729	ENSSTUG00000001748	ENSSTUG00000001763	ccdc149a (ENSSTUG00000001799)	dhx15 (ENSSTUG00000002166)	PPARGC1A (ENSSTUG00000002234) #22	gba3 (ENSSTUG00000002255) #23	ADGRA3 (ENSSTUG00000002273) #24	ENSSTUG00000002450	KCNIP4 (ENSSTUG00000002478)	SEC24C (ENSSTUG00000002697)	SYNPO2 (ENSSTUG00000005339)	ENSSTUG00000005351	USP53 (ENSSTUG00000005403)	PTPRD (ENSSTUG00000005964)	TYRP1 (ENSSTUG00000028684)	LURAP1L (ENSSTUG00000028702)	MPDZ (ENSSTUG00000028873)	ADGRL3 (ENSSTUG00000033369)	ENSSTUG00000040419	ENSSTUG00000040514
Atlantic salmon	MODERN SPECIES	9	tspan5a (ENSSSAG00000065056)	ENSSSAG00000065377	ENSSSAG00000116401	frem1 (ENSSSAG00000065397)	ENSSSAG00000065501	ENSSSAG00000110548	ENSSSAG00000066501	ENSSSAG00000097914	ENSSSAG00000112040	ENSSSAG00000107458	ENSSSAG00000107855	ENSSSAG00000045968	ENSSSAG00000117349	ccdc149a (ENSSSAG00000066535)	dhx15 (ENSSSAG00000067298)	PPARGC1A (ENSSSAG00000108573) #22	gba3 (ENSSSAG00000082579) #23	ADGRA3 (ENSSSAG00000069698) #24	KCNIP4 (ENSSSAG00000121775)	ENSSSAG00000101838	sec24d (ENSSSAG00000069906)	ENSSSAG00000110901	ENSSSAG00000074270	MYOZ2 (ENSSSAG00000074272)	USP53 (ENSSSAG00000074275)	PTPRD (ENSSSAG00000096916)	tyrp-1 (ENSSSAG00000075543)	LURAP1L (ENSSSAG00000122135)	ENSSSAG00000075588	ENSSSAG00000076648	ENSSSAG00000079701
Northern pike	MODERN SPECIES	23	ENSELUG00000016170	ENSELUG00000016183	ENSELUG00000031565	trmt10a (ENSELUG00000016190)	spata6l (ENSELUG00000016212)	slc1a1 (ENSELUG00000016268)	RAP1GDS1 (ENSELUG00000016426)	tspan5a (ENSELUG00000016547)	ENSELUG00000016572	frem1a (ENSELUG00000016724)	ACO1 (ENSELUG00000016812)	ENSELUG00000016841	ACER2 (ENSELUG00000016895)	ccdc149a (ENSELUG00000016931)	dhx15 (ENSELUG00000016984)	PPARGC1A (ENSELUG00000017027) #22	gba3 (ENSELUG00000017046) #23	ADGRA3 (ENSELUG00000000643) #24	KCNIP4 (ENSELUG00000017200)	sec24d (ENSELUG00000017252)	SYNPO2 (ENSELUG00000017264)	myoz2a (ENSELUG00000017272)	USP53 (ENSELUG00000017340)	PTPRD (ENSELUG00000017519)	ENSELUG00000026202	TYRP1 (ENSELUG00000017554)	LURAP1L (ENSELUG00000000688)	MPDZ (ENSELUG00000017678)	ADGRL3 (ENSELUG00000017939)	ENSELUG00000026228	ENSELUG00000018451
Acanthomorphata	ANCESTRAL SPECIES	174						ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Euacanthomorphacea	ANCESTRAL SPECIES	17	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00390000007252.c	ENSGT01030000236063	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Percomorphaceae	ANCESTRAL SPECIES	18	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Tiger tail seahorse	MODERN SPECIES	479					ENSHCOG00000014650	ENSHCOG00000014656	ENSHCOG00000014667	ENSHCOG00000014685	ENSHCOG00000000410	sec24d (ENSHCOG00000014697)	KCNIP4 (ENSHCOG00000014753)	ENSHCOG00000014769	ADGRA3 (ENSHCOG00000014798) #24	ccdc149a (ENSHCOG00000014815)	ENSHCOG00000000415	PPARGC1A (ENSHCOG00000014886) #22	gba3 (ENSHCOG00000014918) #23	ENSHCOG00000014945	ENSHCOG00000014958	ENSHCOG00000014964	LARP7 (ENSHCOG00000000664)	COL25A1 (ENSHCOG00000015024)	etnppl (ENSHCOG00000015028)	ostc (ENSHCOG00000015052)	rpl34 (ENSHCOG00000015061)	ENSHCOG00000015116	sepsecs (ENSHCOG00000015135)	lgi2a (ENSHCOG00000000698)	si:dkey-85k7.7 (ENSHCOG00000015177)	tm4sf5 (ENSHCOG00000015193)	ENSHCOG00000000421
Percomorphaceae_B	ANCESTRAL SPECIES	19	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00650000094787	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Ovalentaria	ANCESTRAL SPECIES	20	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Ovalentaria_B	ANCESTRAL SPECIES	19	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787.d	ENSGT00940000165054.C.f	ENSGT00650000094787.c	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.A	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Pomacentridae	ANCESTRAL SPECIES	28	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a.e	ENSGT00940000154658.a.f	ENSGT00390000017010
Pomacentridae_A	ANCESTRAL SPECIES	22	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f.a	ENSGT00940000165054.C.f.b	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a.f	ENSGT00390000017010
Amphiprion	ANCESTRAL SPECIES	96							ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f.a	ENSGT00940000165054.C.f.b	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000162226.b	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a.f
Clown anemonefish	MODERN SPECIES	1368							ostc (ENSAOCG00000006451)	rpl34 (ENSAOCG00000006471)	SLC24A2 (ENSAOCG00000006517)	sepsecs (ENSAOCG00000000315)	lgi2a (ENSAOCG00000006594)	ENSAOCG00000006611	ENSAOCG00000006622	ccdc149a (ENSAOCG00000006644)	ENSAOCG00000006690	PPARGC1A (ENSAOCG00000006754) #22	gba3 (ENSAOCG00000006768) #23
Orange clownfish	MODERN SPECIES	15	ENSAPEG00000021962	DENND4C (ENSAPEG00000022009)	ENSAPEG00000022147	plin2 (ENSAPEG00000022161)	ELP1 (ENSAPEG00000022178)	ENSAPEG00000022222	ostc (ENSAPEG00000022258)	rpl34 (ENSAPEG00000022292)	SLC24A2 (ENSAPEG00000022322)	sepsecs (ENSAPEG00000022364)	lgi2a (ENSAPEG00000022430)	ENSAPEG00000022445	ENSAPEG00000022456	ccdc149a (ENSAPEG00000022469)	ENSAPEG00000022503	PPARGC1A (ENSAPEG00000022574) #22	gba3 (ENSAPEG00000022624) #23	ADGRA3 (ENSAPEG00000022637) #24	ENSAPEG00000022657	ENSAPEG00000022664	KCNIP4 (ENSAPEG00000022684)	sec24d (ENSAPEG00000022743)	ENSAPEG00000022778	myoz2a (ENSAPEG00000022815)	USP53 (ENSAPEG00000022822)	PTPRD (ENSAPEG00000022919)	TYRP1 (ENSAPEG00000023168)	LURAP1L (ENSAPEG00000023192)	ENSAPEG00000023197	ENSAPEG00000023207	ENSAPEG00000023222
Spiny chromis	MODERN SPECIES	249												ENSAPOG00000018719	ENSAPOG00000018674	ccdc149a (ENSAPOG00000018658)	ENSAPOG00000018637	PPARGC1A (ENSAPOG00000018632) #22	gba3 (ENSAPOG00000018548) #23	ADGRA3 (ENSAPOG00000018540) #24
Bicolor damselfish	MODERN SPECIES	875																PPARGC1A (ENSSPAG00000023514) #22	gba3 (ENSSPAG00000023510) #23	ADGRA3 (ENSSPAG00000023508) #24
Cichlidae	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910.a	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Pseudocrenilabrinae	ANCESTRAL SPECIES	18	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910.a	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f.c.b.a	ENSGT00650000094787.c.a	ENSGT00940000165054.C.f.c.a	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Nile tilapia	MODERN SPECIES	15	plin2 (ENSONIG00000008770)	ADAMTSL1 (ENSONIG00000008766)	ENSONIG00000033929	larp7 (ENSONIG00000008763)	COL25A1 (ENSONIG00000008760)	etnppl (ENSONIG00000008754)	ostc (ENSONIG00000037519)	ENSONIG00000008774	rpl34 (ENSONIG00000038178)	SLC24A2 (ENSONIG00000008752)	sepsecs (ENSONIG00000008744)	lgi2a (ENSONIG00000040285)	ENSONIG00000039847	ccdc149a (ENSONIG00000028055)	ENSONIG00000007642	PPARGC1A (ENSONIG00000007635) #22	gba3 (ENSONIG00000007634) #23	ADGRA3 (ENSONIG00000036115) #24	KCNIP4 (ENSONIG00000041474)	sec24d (ENSONIG00000007619)	SYNPO2 (ENSONIG00000032796)	myoz2a (ENSONIG00000007614)	USP53 (ENSONIG00000007612)	PTPRD (ENSONIG00000007588)	TYRP1 (ENSONIG00000007584)	LURAP1L (ENSONIG00000007582)	MPDZ (ENSONIG00000007574)	ADGRL3 (ENSONIG00000007571)	ENSONIG00000028332	ENSONIG00000007557	ENSONIG00000030865
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	23	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910.a	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f.c.b.a	ENSGT00650000094787.c.a	ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Haplochromini	ANCESTRAL SPECIES	31													ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Haplochromini_A	ANCESTRAL SPECIES	35													ENSGT00940000165054.C.f.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
P. nyererei	MODERN SPECIES	421												ENSPNYG00000006337	ENSPNYG00000006753	ccdc149a (ENSPNYG00000006765)	ENSPNYG00000006790	PPARGC1A (ENSPNYG00000006846) #22	gba3 (ENSPNYG00000006891) #23	ADGRA3 (ENSPNYG00000006906) #24	KCNIP4 (ENSPNYG00000006925)	sec24d (ENSPNYG00000006950)	ENSPNYG00000006966	myoz2a (ENSPNYG00000006977)	ENSPNYG00000007004	PTPRD (ENSPNYG00000007040)	TYRP1 (ENSPNYG00000007139)	LURAP1L (ENSPNYG00000007165)	MPDZ (ENSPNYG00000007185)	ADGRL3 (ENSPNYG00000007344)
Haplochromini_B	ANCESTRAL SPECIES	25	ENSGT00940000156243.lb	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910.a	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f.c.b.a.a	ENSGT00650000094787.c.a	ENSGT00940000165054.C.f.c.a.a.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Eastern happy	MODERN SPECIES	15	rpl34 (ENSACLG00000023428)	SLC24A2 (ENSACLG00000000199)	sepsecs (ENSACLG00000000375)	lgi2a (ENSACLG00000000457)	ENSACLG00000000482	ENSACLG00000000489	ENSACLG00000000497	ENSACLG00000000564	ENSACLG00000000580	ENSACLG00000000661	ccdc149a (ENSACLG00000000669)	ENSACLG00000000717	ENSACLG00000000737	ENSACLG00000000749	ENSACLG00000000765	PPARGC1A (ENSACLG00000001002) #22	gba3 (ENSACLG00000001126) #23	ADGRA3 (ENSACLG00000001140) #24	KCNIP4 (ENSACLG00000001315)	sec24d (ENSACLG00000001362)	ENSACLG00000001403	myoz2a (ENSACLG00000001413)	USP53 (ENSACLG00000001439)	PTPRD (ENSACLG00000001550)	TYRP1 (ENSACLG00000001942)	LURAP1L (ENSACLG00000001998)	MPDZ (ENSACLG00000002011)	ADGRL3 (ENSACLG00000002240)	ENSACLG00000002311	ENSACLG00000002328	CAAP1 (ENSACLG00000002613)
Zebra mbuna	MODERN SPECIES	1106	ENSMZEG00005002072	etnppl (ENSMZEG00005002019)	ostc (ENSMZEG00005002057)	rpl34 (ENSMZEG00005001997)	SLC24A2 (ENSMZEG00005001969)	sepsecs (ENSMZEG00005001940)	lgi2a (ENSMZEG00005001904)	ENSMZEG00005001891	ENSMZEG00005001871	ENSMZEG00005001859	ENSMZEG00005001849	ENSMZEG00005001840	ENSMZEG00005001823	ccdc149a (ENSMZEG00005001812)	ENSMZEG00005001757	PPARGC1A (ENSMZEG00005001739) #22	ENSMZEG00005001709	gba3 (ENSMZEG00005001698) #23	ADGRA3 (ENSMZEG00005001689) #24	KCNIP4 (ENSMZEG00005001667)	sec24d (ENSMZEG00005001595)	ENSMZEG00005001547	myoz2a (ENSMZEG00005001520)	USP53 (ENSMZEG00005001507)	PTPRD (ENSMZEG00005001243)	ENSMZEG00005001208	TYRP1 (ENSMZEG00005001187)	LURAP1L (ENSMZEG00005001183)	MPDZ (ENSMZEG00005001094)	ADGRL3 (ENSMZEG00005001028)	ENSMZEG00005000817
Burton s mouthbrooder	MODERN SPECIES	451														ccdc149a (ENSHBUG00000005103)	ENSHBUG00000005166	PPARGC1A (ENSHBUG00000005269) #22	gba3 (ENSHBUG00000005285) #23	ADGRA3 (ENSHBUG00000005294) #24	KCNIP4 (ENSHBUG00000005352)	sec24d (ENSHBUG00000000141)	ENSHBUG00000005763	myoz2a (ENSHBUG00000005777)	ENSHBUG00000005804	PTPRD (ENSHBUG00000005922)
Lyretail cichlid	MODERN SPECIES	406													ENSNBRG00000023355	ccdc149a (ENSNBRG00000023359)	ENSNBRG00000023387	PPARGC1A (ENSNBRG00000023403) #22	gba3 (ENSNBRG00000023414) #23	ADGRA3 (ENSNBRG00000023430) #24	KCNIP4 (ENSNBRG00000023439)	sec24d (ENSNBRG00000023448)	ENSNBRG00000023471	myoz2a (ENSNBRG00000023482)	ENSNBRG00000023490	PTPRD (ENSNBRG00000023501)	TYRP1 (ENSNBRG00000023511)	LURAP1L (ENSNBRG00000023518)	MPDZ (ENSNBRG00000023524)	ENSNBRG00000023536	ENSNBRG00000023541
Midas cichlid	MODERN SPECIES	793														ccdc149a (ENSACIG00000009651)	dhx15 (ENSACIG00000009701)	PPARGC1A (ENSACIG00000009732) #22	gba3 (ENSACIG00000009785) #23	ADGRA3 (ENSACIG00000009827) #24	KCNIP4 (ENSACIG00000009882)	sec24d (ENSACIG00000009914)	SYNPO2 (ENSACIG00000010161)	myoz2a (ENSACIG00000010197)	USP53 (ENSACIG00000010321)	PTPRD (ENSACIG00000010385)	TYRP1 (ENSACIG00000010444)	LURAP1L (ENSACIG00000010470)	MPDZ (ENSACIG00000010482)	ADGRL3 (ENSACIG00000010583)	ENSACIG00000010635	CAAP1 (ENSACIG00000010733)	elavl2 (ENSACIG00000010855)
Atherinomorphae	ANCESTRAL SPECIES	22	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a	ENSGT00390000017010
Cyprinodontiformes	ANCESTRAL SPECIES	22	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Aplocheiloidei	ANCESTRAL SPECIES	65	ENSGT00940000158215	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Mangrove rivulus	MODERN SPECIES	29	ENSKMAG00000004722	rpl34 (ENSKMAG00000004831)	ostc (ENSKMAG00000004843)	etnppl (ENSKMAG00000004865)	COL25A1 (ENSKMAG00000004934)	larp7 (ENSKMAG00000005057)	ENSKMAG00000005074	ENSKMAG00000005088	plin2 (ENSKMAG00000005106)	ENSKMAG00000005127	DENND4C (ENSKMAG00000005171)	sepsecs (ENSKMAG00000005232)	lgi2a (ENSKMAG00000005285)	ccdc149a (ENSKMAG00000005321)	ENSKMAG00000005335	PPARGC1A (ENSKMAG00000005390) #22	ENSKMAG00000005471	gba3 (ENSKMAG00000005482) #23	ADGRA3 (ENSKMAG00000005518) #24	KCNIP4 (ENSKMAG00000005612)	ENSKMAG00000005659	sec24d (ENSKMAG00000005695)	ENSKMAG00000005720	myoz2a (ENSKMAG00000005757)	USP53 (ENSKMAG00000005777)	PTPRD (ENSKMAG00000005817)	TYRP1 (ENSKMAG00000005890)	LURAP1L (ENSKMAG00000005922)	MPDZ (ENSKMAG00000005956)	ADGRL3 (ENSKMAG00000006060)	ENSKMAG00000006133
Turquoise killifish	MODERN SPECIES	1613	TCF21 (ENSNFUG00015024370)	TBPL1 (ENSNFUG00015024368)	slc2a12 (ENSNFUG00015024362)	SGK1 (ENSNFUG00015024306)	aldh8a1 (ENSNFUG00015024296)	ENSNFUG00015024289	HBS1L (ENSNFUG00015023786)	CMYB (ENSNFUG00015023707)	ENSNFUG00015023702	PDE7B (ENSNFUG00015023665)	ENSNFUG00015023654	CCDC149A (ENSNFUG00015023552)	DHX15 (ENSNFUG00015023530)	ENSNFUG00015023526	ENSNFUG00015023524	PPARGC1A (ENSNFUG00015023520) #22	gba3 (ENSNFUG00015023515) #23	GPR125 (ENSNFUG00015023499) #24	ENSNFUG00015023471	ENSNFUG00015023463	ENSNFUG00015023461	KCNIP4 (ENSNFUG00015023456)	sec24d (ENSNFUG00015023311)	SYNPO2 (ENSNFUG00015023296)	myoz2a (ENSNFUG00015023294)	ENSNFUG00015023290	ENSNFUG00015023288	ENSNFUG00015023287	ENSNFUG00015023285	ENSNFUG00015023284	ENSNFUG00015023282
Cyprinodontoidei	ANCESTRAL SPECIES	21	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
NAME_4	ANCESTRAL SPECIES	89	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B
Mummichog	MODERN SPECIES	2216	DENND4C (ENSFHEG00000021547)	ENSFHEG00000021560	plin2 (ENSFHEG00000021574)	ENSFHEG00000021598	ENSFHEG00000021613	ENSFHEG00000021639	larp7 (ENSFHEG00000021652)	etnppl (ENSFHEG00000021689)	ostc (ENSFHEG00000021712)	rpl34 (ENSFHEG00000021729)	ENSFHEG00000021776	sepsecs (ENSFHEG00000021820)	lgi2a (ENSFHEG00000021844)	ccdc149a (ENSFHEG00000021883)	ENSFHEG00000021899	PPARGC1A (ENSFHEG00000021990) #22	ENSFHEG00000021999 #23	ADGRA3 (ENSFHEG00000022017) #24	KCNIP4 (ENSFHEG00000022030)	ENSFHEG00000022077	myoz2a (ENSFHEG00000022088)	USP53 (ENSFHEG00000022100)	PTPRD (ENSFHEG00000022220)
Sheepshead minnow	MODERN SPECIES	263				ADAMTSL1 (ENSCVAG00000016926)	ENSCVAG00000016863	larp7 (ENSCVAG00000016852)	etnppl (ENSCVAG00000016759)	ostc (ENSCVAG00000016750)	rpl34 (ENSCVAG00000016732)	ENSCVAG00000016715	sepsecs (ENSCVAG00000016650)	lgi2a (ENSCVAG00000016620)	ENSCVAG00000016590	ccdc149a (ENSCVAG00000016580)	ENSCVAG00000000873	PPARGC1A (ENSCVAG00000016547) #22	gba3 (ENSCVAG00000016477) #23
Poeciliinae	ANCESTRAL SPECIES	21	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Poecilia	ANCESTRAL SPECIES	48	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
NAME_6	ANCESTRAL SPECIES	167	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B
Amazon molly	MODERN SPECIES	361	plin2 (ENSPFOG00000000129)	ADAMTSL1 (ENSPFOG00000000171)	ENSPFOG00000000245	larp7 (ENSPFOG00000000265)	ENSPFOG00000000314	COL25A1 (ENSPFOG00000000329)	etnppl (ENSPFOG00000022180)	ostc (ENSPFOG00000000415)	rpl34 (ENSPFOG00000000440)	ENSPFOG00000000476	sepsecs (ENSPFOG00000000629)	lgi2a (ENSPFOG00000000752)	ENSPFOG00000000794	ccdc149a (ENSPFOG00000000819)	ENSPFOG00000000949	PPARGC1A (ENSPFOG00000001263) #22	gba3 (ENSPFOG00000001505) #23	ADGRA3 (ENSPFOG00000001638) #24	KCNIP4 (ENSPFOG00000001854)	sec24d (ENSPFOG00000002059)	ENSPFOG00000002529	myoz2a (ENSPFOG00000002591)	USP53 (ENSPFOG00000002651)	PTPRD (ENSPFOG00000002724)
Sailfin molly	MODERN SPECIES	197							etnppl (ENSPLAG00000002987)	ostc (ENSPLAG00000002963)	rpl34 (ENSPLAG00000002943)	ENSPLAG00000002935	sepsecs (ENSPLAG00000000813)	lgi2a (ENSPLAG00000002899)	ENSPLAG00000002885	ccdc149a (ENSPLAG00000002874)	ENSPLAG00000002863	PPARGC1A (ENSPLAG00000002827) #22	gba3 (ENSPLAG00000002810) #23	ADGRA3 (ENSPLAG00000002802) #24
Guppy	MODERN SPECIES	448	plin2 (ENSPREG00000019580)	ENSPREG00000019569	ENSPREG00000019555	ENSPREG00000019534	larp7 (ENSPREG00000019513)	etnppl (ENSPREG00000019475)	ostc (ENSPREG00000019453)	rpl34 (ENSPREG00000019431)	SLC24A2 (ENSPREG00000019395)	sepsecs (ENSPREG00000019358)	lgi2a (ENSPREG00000019332)	ENSPREG00000019312	ENSPREG00000019297	ccdc149a (ENSPREG00000019271)	ENSPREG00000019256	PPARGC1A (ENSPREG00000019171) #22	gba3 (ENSPREG00000019133) #23	ADGRA3 (ENSPREG00000019098) #24	KCNIP4 (ENSPREG00000018931)	sec24d (ENSPREG00000018869)	ENSPREG00000018845	myoz2a (ENSPREG00000018830)	USP53 (ENSPREG00000018805)	PTPRD (ENSPREG00000018440)	TYRP1 (ENSPREG00000018301)	LURAP1L (ENSPREG00000018293)	ENSPREG00000017839	ADGRL3 (ENSPREG00000017398)	ENSPREG00000017212	CAAP1 (ENSPREG00000017188)	elavl2 (ENSPREG00000017160)
Platyfish	MODERN SPECIES	5	haus6 (ENSXMAG00000029941)	DENND4C (ENSXMAG00000008498)	plin2 (ENSXMAG00000008491)	ENSXMAG00000026993	ADAMTSL1 (ENSXMAG00000008488)	ENSXMAG00000008487	larp7 (ENSXMAG00000008479)	etnppl (ENSXMAG00000028512)	ostc (ENSXMAG00000025929)	ENSXMAG00000008464	sepsecs (ENSXMAG00000008452)	lgi2a (ENSXMAG00000008444)	ENSXMAG00000027969	ccdc149a (ENSXMAG00000008441)	dhx15 (ENSXMAG00000008425)	PPARGC1A (ENSXMAG00000007748) #22	gba3 (ENSXMAG00000007766) #23	ADGRA3 (ENSXMAG00000007771) #24	KCNIP4 (ENSXMAG00000001979)	sec24d (ENSXMAG00000001944)	ENSXMAG00000001940	myoz2a (ENSXMAG00000023576)	USP53 (ENSXMAG00000021530)	PTPRD (ENSXMAG00000004920)	ENSXMAG00000028029	TYRP1 (ENSXMAG00000004910)	LURAP1L (ENSXMAG00000004908)	ENSXMAG00000027724	MPDZ (ENSXMAG00000004907)	ADGRL3 (ENSXMAG00000004882)	ENSXMAG00000004781
Oryzias	ANCESTRAL SPECIES	21	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a	ENSGT00390000017010
Oryzias_a	ANCESTRAL SPECIES	27	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a.g	ENSGT00940000154658.a.h
Japanese Medaka HdrR	MODERN SPECIES	9	ENSORLG00000021989	ENSORLG00000005000	ENSORLG00000022811	ENSORLG00000027637	larp7 (ENSORLG00000004978)	COL25A1 (ENSORLG00000004934)	etnppl (ENSORLG00000004922)	ostc (ENSORLG00000004900)	rpl34 (ENSORLG00000004887)	SLC24A2 (ENSORLG00000004872)	sepsecs (ENSORLG00000004861)	lgi2a (ENSORLG00000004842)	ENSORLG00000025218	ccdc149a (ENSORLG00000004829)	ENSORLG00000004819	PPARGC1A (ENSORLG00000004788) #22	gba3 (ENSORLG00000004780) #23	ADGRA3 (ENSORLG00000004767) #24	ENSORLG00000023209	KCNIP4 (ENSORLG00000004748)	sec24d (ENSORLG00000004729)	SYNPO2 (ENSORLG00000028437)	myoz2a (ENSORLG00000025044)	USP53 (ENSORLG00000004686)	ENSORLG00000022754	PTPRD (ENSORLG00000004650)	TYRP1 (ENSORLG00000004326)	LURAP1L (ENSORLG00000028081)	MPDZ (ENSORLG00000004290)	ADGRL3 (ENSORLG00000004254)	ENSORLG00000023983
Chinese medaka	MODERN SPECIES	335	ENSOSIG00000017652	plin2 (ENSOSIG00000017655)	ENSOSIG00000017666	ENSOSIG00000017669	larp7 (ENSOSIG00000017676)	ENSOSIG00000017680	COL25A1 (ENSOSIG00000017705)	ostc (ENSOSIG00000017716)	rpl34 (ENSOSIG00000017720)	SLC24A2 (ENSOSIG00000017737)	sepsecs (ENSOSIG00000017745)	lgi2a (ENSOSIG00000017781)	ENSOSIG00000017783	ccdc149a (ENSOSIG00000017803)	ENSOSIG00000017891	PPARGC1A (ENSOSIG00000017996) #22	gba3 (ENSOSIG00000018001) #23	ADGRA3 (ENSOSIG00000018085) #24	KCNIP4 (ENSOSIG00000018864)	sec24d (ENSOSIG00000018989)	SYNPO2 (ENSOSIG00000020993)	ENSOSIG00000021000	USP53 (ENSOSIG00000021007)
Oryzias_b	ANCESTRAL SPECIES	18	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Indian medaka	MODERN SPECIES	19	ENSOMEG00000007048	ENSOMEG00000007016	ENSOMEG00000006961	ENSOMEG00000006939	larp7 (ENSOMEG00000006920)	COL25A1 (ENSOMEG00000006833)	etnppl (ENSOMEG00000006448)	ostc (ENSOMEG00000006412)	rpl34 (ENSOMEG00000006389)	SLC24A2 (ENSOMEG00000006308)	sepsecs (ENSOMEG00000006218)	lgi2a (ENSOMEG00000006174)	ENSOMEG00000006152	ccdc149a (ENSOMEG00000006119)	ENSOMEG00000006075	PPARGC1A (ENSOMEG00000000670) #22	gba3 (ENSOMEG00000005946) #23	ADGRA3 (ENSOMEG00000005915) #24	KCNIP4 (ENSOMEG00000005776)	sec24d (ENSOMEG00000005678)	ENSOMEG00000005638	myoz2a (ENSOMEG00000005628)	ENSOMEG00000005608	PTPRD (ENSOMEG00000005568)	TYRP1 (ENSOMEG00000005449)	LURAP1L (ENSOMEG00000005431)	MPDZ (ENSOMEG00000005411)	ADGRL3 (ENSOMEG00000005355)	ENSOMEG00000005308	CAAP1 (ENSOMEG00000005226)	elavl2 (ENSOMEG00000005178)
Javanese ricefish	MODERN SPECIES	9	ENSOJAG00000012873	plin2 (ENSOJAG00000012882)	ENSOJAG00000012891	ENSOJAG00000012900	larp7 (ENSOJAG00000012909)	ENSOJAG00000012922	etnppl (ENSOJAG00000012942)	ostc (ENSOJAG00000013035)	rpl34 (ENSOJAG00000013084)	SLC24A2 (ENSOJAG00000013120)	sepsecs (ENSOJAG00000013136)	lgi2a (ENSOJAG00000013212)	ENSOJAG00000013236	ccdc149a (ENSOJAG00000013251)	ENSOJAG00000013382	PPARGC1A (ENSOJAG00000013648) #22	gba3 (ENSOJAG00000013665) #23	ADGRA3 (ENSOJAG00000013743) #24	KCNIP4 (ENSOJAG00000014582)	sec24d (ENSOJAG00000014803)	SYNPO2 (ENSOJAG00000017001)	myoz2a (ENSOJAG00000017040)	USP53 (ENSOJAG00000017053)	PTPRD (ENSOJAG00000017841)	ENSOJAG00000023091	TYRP1 (ENSOJAG00000023096)	LURAP1L (ENSOJAG00000023101)	ADGRL3 (ENSOJAG00000023481)	ENSOJAG00000023853	ENSOJAG00000023915	CAAP1 (ENSOJAG00000023918)
Percomorphaceae_C	ANCESTRAL SPECIES	20	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00650000094787	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Percomorphaceae_D	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a
Anabantaria	ANCESTRAL SPECIES	19	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Anabantoidei	ANCESTRAL SPECIES	24	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT01030000236063	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Climbing perch	MODERN SPECIES	9	ENSATEG00000016165	ENSATEG00000016224	ENSATEG00000016238	ENSATEG00000027750	COL25A1 (ENSATEG00000029427)	ENSATEG00000029379	ETNPPL (ENSATEG00000016261)	OSTC (ENSATEG00000016319)	RPL34 (ENSATEG00000016338)	ENSATEG00000016363	sepsecs (ENSATEG00000016442)	lgi2a (ENSATEG00000028171)	ENSATEG00000016497	ccdc149a (ENSATEG00000016582)	ENSATEG00000016651	PPARGC1A (ENSATEG00000016702) #22	gba3 (ENSATEG00000016764) #23	ADGRA3 (ENSATEG00000016776) #24	KCNIP4 (ENSATEG00000016803)	sec24d (ENSATEG00000016860)	SYNPO2 (ENSATEG00000017221)	myoz2a (ENSATEG00000017228)	USP53 (ENSATEG00000017245)	PTPRD (ENSATEG00000017283)	TYRP1 (ENSATEG00000017446)	LURAP1L (ENSATEG00000017466)	ENSATEG00000026345	MPDZ (ENSATEG00000017540)	ENSATEG00000017807	ENSATEG00000028927	ENSATEG00000017971
Siamese fighting fish	MODERN SPECIES	10	ENSBSLG00000018242	ENSBSLG00000018223	ENSBSLG00000018195	ENSBSLG00000018154	ENSBSLG00000018152	ENSBSLG00000018150	ENSBSLG00000018149	ENSBSLG00000018147	ENSBSLG00000018146	ENSBSLG00000018144	ENSBSLG00000018138	ENSBSLG00000018134	ENSBSLG00000018124	ccdc149a (ENSBSLG00000018107)	ENSBSLG00000018041	PPARGC1A (ENSBSLG00000017998) #22	gba3 (ENSBSLG00000017992) #23	ADGRA3 (ENSBSLG00000017720) #24	KCNIP4 (ENSBSLG00000017625)	sec24d (ENSBSLG00000015555)	SYNPO2 (ENSBSLG00000015420)	myoz2a (ENSBSLG00000015413)	USP53 (ENSBSLG00000015366)	ENSBSLG00000015352	PTPRD (ENSBSLG00000004441)	LURAP1L (ENSBSLG00000003235)	MPDZ (ENSBSLG00000002122)	ENSBSLG00000002092	ADGRL3 (ENSBSLG00000001907)	ENSBSLG00000001323	CAAP1 (ENSBSLG00000001197)
Zig-zag eel	MODERN SPECIES	9	ENSMAMG00000005941	ENSMAMG00000005928	ENSMAMG00000028671	ENSMAMG00000005846	ENSMAMG00000005835	ETNPPL (ENSMAMG00000005807)	ENSMAMG00000005796	RPL34 (ENSMAMG00000005765)	ENSMAMG00000005661	sepsecs (ENSMAMG00000005628)	lgi2a (ENSMAMG00000024529)	ENSMAMG00000005604	ENSMAMG00000026600	ccdc149a (ENSMAMG00000005569)	ENSMAMG00000005544	PPARGC1A (ENSMAMG00000005531) #22	gba3 (ENSMAMG00000005526) #23	ADGRA3 (ENSMAMG00000005447) #24	KCNIP4 (ENSMAMG00000005426)	sec24d (ENSMAMG00000005409)	SYNPO2 (ENSMAMG00000005405)	myoz2a (ENSMAMG00000005400)	USP53 (ENSMAMG00000005390)	PTPRD (ENSMAMG00000005311)	TYRP1 (ENSMAMG00000005278)	LURAP1L (ENSMAMG00000005271)	MPDZ (ENSMAMG00000005182)	ENSMAMG00000005041	ENSMAMG00000004862	CAAP1 (ENSMAMG00000004841)	ENSMAMG00000004829
Carangaria	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Carangaria_A	ANCESTRAL SPECIES	32	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT01030000236063	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Seriola	ANCESTRAL SPECIES	92	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT01030000236063	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.e.a	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00990000203806	ENSGT00940000154658.a	ENSGT00390000017010
Greater amberjack	MODERN SPECIES	104	plin2 (ENSSDUG00000006963)	ENSSDUG00000006980	ENSSDUG00000007005	ENSSDUG00000007032	larp7 (ENSSDUG00000007045)	ENSSDUG00000007084	etnppl (ENSSDUG00000007097)	ostc (ENSSDUG00000007161)	rpl34 (ENSSDUG00000007177)	ENSSDUG00000007207	sepsecs (ENSSDUG00000007238)	lgi2a (ENSSDUG00000007275)	ENSSDUG00000007315	ccdc149a (ENSSDUG00000007338)	ENSSDUG00000007372	PPARGC1A (ENSSDUG00000007408) #22	ADGRA3 (ENSSDUG00000007460) #24	gba3 (ENSSDUG00000007517) #23	KCNIP4 (ENSSDUG00000007532)	sec24d (ENSSDUG00000007582)	SYNPO2 (ENSSDUG00000007614)	myoz2a (ENSSDUG00000007627)	USP53 (ENSSDUG00000007643)	PTPRD (ENSSDUG00000007674)	ENSSDUG00000007762	TYRP1 (ENSSDUG00000007769)	LURAP1L (ENSSDUG00000007782)	MPDZ (ENSSDUG00000007803)	ADGRL3 (ENSSDUG00000007904)	ENSSDUG00000007944	ENSSDUG00000007974
Yellowtail amberjack	MODERN SPECIES	3028												ENSSLDG00000006883	ENSSLDG00000006896	ccdc149a (ENSSLDG00000006908)	ENSSLDG00000006937	PPARGC1A (ENSSLDG00000006987) #22	gba3 (ENSSLDG00000007033) #23	ADGRA3 (ENSSLDG00000007055) #24	KCNIP4 (ENSSLDG00000007147)	sec24d (ENSSLDG00000007259)	SYNPO2 (ENSSLDG00000007325)	myoz2a (ENSSLDG00000007340)	USP53 (ENSSLDG00000007359)	PTPRD (ENSSLDG00000007511)	TYRP1 (ENSSLDG00000007913)	LURAP1L (ENSSLDG00000007937)	MPDZ (ENSSLDG00000007978)	ADGRL3 (ENSSLDG00000008084)	ENSSLDG00000008148	ENSSLDG00000008240	CAAP1 (ENSSLDG00000008437)
Barramundi perch	MODERN SPECIES	17	ADAMTSL1 (ENSLCAG00010017109)	ENSLCAG00010017106	larp7 (ENSLCAG00010017103)	ENSLCAG00010017099	etnppl (ENSLCAG00010017071)	ostc (ENSLCAG00010017065)	rpl34 (ENSLCAG00010017061)	SLC24A2 (ENSLCAG00010017053)	sepsecs (ENSLCAG00010017044)	lgi2a (ENSLCAG00010017037)	ENSLCAG00010017036	ENSLCAG00010017035	ENSLCAG00010017032	ccdc149a (ENSLCAG00010017029)	ENSLCAG00010017007	PPARGC1A (ENSLCAG00010017001) #22	gba3 (ENSLCAG00010017000) #23	ADGRA3 (ENSLCAG00010016996) #24	KCNIP4 (ENSLCAG00010016993)	sec24d (ENSLCAG00010016774)	SYNPO2 (ENSLCAG00010016710)	myoz2a (ENSLCAG00010016708)	USP53 (ENSLCAG00010016704)	PTPRD (ENSLCAG00010016357)	TYRP1 (ENSLCAG00010016274)	LURAP1L (ENSLCAG00010016272)	MPDZ (ENSLCAG00010016203)	ADGRL3 (ENSLCAG00010015142)	ENSLCAG00010014177	CAAP1 (ENSLCAG00010014034)	SLC45A4 (ENSLCAG00010014030)
Pleuronectoidei	ANCESTRAL SPECIES	17	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Turbot	MODERN SPECIES	11	ENSSMAG00000011239	ENSSMAG00000011259	ENSSMAG00000011296	COL25A1 (ENSSMAG00000011318)	ETNPPL (ENSSMAG00000011357)	OSTC (ENSSMAG00000025611)	RPL34 (ENSSMAG00000011388)	ENSSMAG00000011402	sepsecs (ENSSMAG00000011444)	lgi2a (ENSSMAG00000011472)	ENSSMAG00000011493	ENSSMAG00000032501	ccdc149a (ENSSMAG00000011517)	ENSSMAG00000011559	ENSSMAG00000036898	PPARGC1A (ENSSMAG00000011571) #22	ENSSMAG00000011635	gba3 (ENSSMAG00000011641) #23	ADGRA3 (ENSSMAG00000011652) #24	KCNIP4 (ENSSMAG00000009912)	sec24d (ENSSMAG00000009962)	SYNPO2 (ENSSMAG00000009992)	myoz2a (ENSSMAG00000010051)	ENSSMAG00000010060	PTPRD (ENSSMAG00000010085)	TYRP1 (ENSSMAG00000010205)	LURAP1L (ENSSMAG00000010216)	MPDZ (ENSSMAG00000010226)	ENSSMAG00000010310	ENSSMAG00000010548	CAAP1 (ENSSMAG00000010726)
Tongue sole	MODERN SPECIES		plin2 (ENSCSEG00000009156)	ENSCSEG00000009178	ENSCSEG00000009122	ENSCSEG00000009103	ENSCSEG00000009092	larp7 (ENSCSEG00000009088)	ENSCSEG00000008890	etnppl (ENSCSEG00000007057)	ostc (ENSCSEG00000007086)	rpl34 (ENSCSEG00000007040)	ENSCSEG00000007006	sepsecs (ENSCSEG00000006978)	lgi2a (ENSCSEG00000006962)	ccdc149a (ENSCSEG00000006946)	ENSCSEG00000006920	PPARGC1A (ENSCSEG00000006884) #22	gba3 (ENSCSEG00000006878) #23	ENSCSEG00000006872	ADGRA3 (ENSCSEG00000006830) #24	KCNIP4 (ENSCSEG00000006784)	sec24d (ENSCSEG00000006764)	SYNPO2 (ENSCSEG00000006762)	myoz2a (ENSCSEG00000006757)	USP53 (ENSCSEG00000006719)	PTPRD (ENSCSEG00000006693)	ENSCSEG00000006686	TYRP1 (ENSCSEG00000006672)	LURAP1L (ENSCSEG00000006665)	MPDZ (ENSCSEG00000006527)	ADGRL3 (ENSCSEG00000006436)	ENSCSEG00000006362
Eupercaria	ANCESTRAL SPECIES	19	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Eupecaria_A	ANCESTRAL SPECIES	20	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Ballan wrasse	MODERN SPECIES	32	ENSLBEG00000020199	ENSLBEG00000020131	ENSLBEG00000020084	larp7 (ENSLBEG00000020062)	COL25A1 (ENSLBEG00000020026)	etnppl (ENSLBEG00000019967)	ostc (ENSLBEG00000019949)	rpl34 (ENSLBEG00000019926)	SLC24A2 (ENSLBEG00000019874)	sepsecs (ENSLBEG00000019794)	lgi2a (ENSLBEG00000019750)	ENSLBEG00000019730	ENSLBEG00000019708	ccdc149a (ENSLBEG00000019664)	ENSLBEG00000019620	PPARGC1A (ENSLBEG00000019562) #22	gba3 (ENSLBEG00000019541) #23	ADGRA3 (ENSLBEG00000019470) #24	KCNIP4 (ENSLBEG00000019403)	sec24d (ENSLBEG00000019311)	ENSLBEG00000019292	myoz2a (ENSLBEG00000019146)	ENSLBEG00000019095	ENSLBEG00000019081	FBXL17 (ENSLBEG00000019061)	PRXL2C (ENSLBEG00000019044)	ENSLBEG00000018977	ENSLBEG00000018951	znf367 (ENSLBEG00000018925)	ENSLBEG00000018885	ENSLBEG00000018867
Eupecaria_B	ANCESTRAL SPECIES	20	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a
Eupecaria_C	ANCESTRAL SPECIES	20	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a	ENSGT00390000017010
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	19	ENSGT00940000178571	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00940000165054.C.f	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00980000202414	ENSGT00940000154658.a	ENSGT00390000017010
European seabass	MODERN SPECIES	16	ENSDLAG00005021873	ENSDLAG00005021856	ENSDLAG00005022090	ENSDLAG00005022094	ENSDLAG00005022182	ENSDLAG00005022185	COL25A1 (ENSDLAG00005027354)	ENSDLAG00005022260	OSTC (ENSDLAG00005033655)	ENSDLAG00005027613	sepsecs (ENSDLAG00005022341)	lgi2a (ENSDLAG00005028049)	ENSDLAG00005022371	ccdc149a (ENSDLAG00005022379)	ENSDLAG00005022394	PPARGC1A (ENSDLAG00005022412) #22	gba3 (ENSDLAG00005022428) #23	ADGRA3 (ENSDLAG00005022440) #24	KCNIP4 (ENSDLAG00005022495)	sec24d (ENSDLAG00005022522)	SYNPO2 (ENSDLAG00005022711)	myoz2a (ENSDLAG00005027006)	USP53 (ENSDLAG00005022719)	PTPRD (ENSDLAG00005022790)	ENSDLAG00005023769	ENSDLAG00005023772	ENSDLAG00005031040	MPDZ (ENSDLAG00005023845)	ENSDLAG00005024755	ENSDLAG00005025425	CAAP1 (ENSDLAG00005006023)
Gilthead seabream	MODERN SPECIES	1	ENSSAUG00010026716	ENSSAUG00010026715	ENSSAUG00010026714	ENSSAUG00010026713	ENSSAUG00010026711	ENSSAUG00010026710	ENSSAUG00010026709	ENSSAUG00010026706	ENSSAUG00010026705	ENSSAUG00010026704	ENSSAUG00010026702	ENSSAUG00010026699	ENSSAUG00010026697	ccdc149a (ENSSAUG00010026696)	ENSSAUG00010026692	PPARGC1A (ENSSAUG00010026690) #22	gba3 (ENSSAUG00010026688) #23	ADGRA3 (ENSSAUG00010026684) #24	KCNIP4 (ENSSAUG00010026681)	sec24d (ENSSAUG00010026666)	SYNPO2 (ENSSAUG00010026663)	myoz2a (ENSSAUG00010026662)	USP53 (ENSSAUG00010026657)	PTPRD (ENSSAUG00010018340)	TYRP1 (ENSSAUG00010018023)	LURAP1L (ENSSAUG00010018021)	MPDZ (ENSSAUG00010013816)	ADGRL3 (ENSSAUG00010007883)	ENSSAUG00010002251	CAAP1 (ENSSAUG00010002020)	elavl2 (ENSSAUG00010001898)
Perciformes	ANCESTRAL SPECIES	19	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010
Perciformes_a	ANCESTRAL SPECIES	18	ENSGT00940000158215	ENSGT00390000005970	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00980000203174	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010
Pike perch	MODERN SPECIES	65	DENND4C (ENSSLUG00000023788)	ENSSLUG00000023743	plin2 (ENSSLUG00000023736)	ENSSLUG00000023725	ENSSLUG00000023721	larp7 (ENSSLUG00000023715)	etnppl (ENSSLUG00000023691)	ostc (ENSSLUG00000023673)	rpl34 (ENSSLUG00000023670)	SLC24A2 (ENSSLUG00000023616)	sepsecs (ENSSLUG00000023584)	lgi2a (ENSSLUG00000023568)	ccdc149a (ENSSLUG00000023407)	ENSSLUG00000023363	ENSSLUG00000023358	PPARGC1A (ENSSLUG00000023352) #22	gba3 (ENSSLUG00000023345) #23	ADGRA3 (ENSSLUG00000022914) #24	KCNIP4 (ENSSLUG00000022875)	sec24d (ENSSLUG00000022346)	ENSSLUG00000022306	myoz2a (ENSSLUG00000022299)	USP53 (ENSSLUG00000022283)	PTPRD (ENSSLUG00000019313)	ENSSLUG00000019070	TYRP1 (ENSSLUG00000019066)	LURAP1L (ENSSLUG00000019062)	MPDZ (ENSSLUG00000015084)	ENSSLUG00000014877	ADGRL3 (ENSSLUG00000010650)	ENSSLUG00000025298
Channel bull blenny	MODERN SPECIES	9	haus6 (ENSCGOG00000013333)	DENND4C (ENSCGOG00000012628)	ENSCGOG00000012603	plin2 (ENSCGOG00000012575)	ADAMTSL1 (ENSCGOG00000012548)	ENSCGOG00000012543	larp7 (ENSCGOG00000012378)	etnppl (ENSCGOG00000012362)	ostc (ENSCGOG00000012347)	rpl34 (ENSCGOG00000012341)	SLC24A2 (ENSCGOG00000012334)	sepsecs (ENSCGOG00000012276)	ENSCGOG00000012273	ccdc149a (ENSCGOG00000012248)	ENSCGOG00000012205	PPARGC1A (ENSCGOG00000012175) #22	gba3 (ENSCGOG00000012172) #23	ADGRA3 (ENSCGOG00000012003) #24	KCNIP4 (ENSCGOG00000011991)	ENSCGOG00000011982	sec24d (ENSCGOG00000010688)	ENSCGOG00000010643	ENSCGOG00000010641	ENSCGOG00000010638	myoz2a (ENSCGOG00000022655)	USP53 (ENSCGOG00000022651)	ENSCGOG00000022646	PTPRD (ENSCGOG00000015824)	TYRP1 (ENSCGOG00000015529)	LURAP1L (ENSCGOG00000015528)	ENSCGOG00000015527
Cottioidei	ANCESTRAL SPECIES	20	ENSGT00950000182920.b.a.b.a.a	ENSGT00940000156243	ENSGT00940000159642.e	ENSGT00940000178140	ENSGT01100000263573.a.a.b	ENSGT00940000154949.b	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT01030000234532.B.e.a.a.a.b	ENSGT00390000007332	ENSGT00940000157294.d	ENSGT00650000094787	ENSGT00390000015958.d	ENSGT00940000155800.a.a	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000157235 #24	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155586.B	ENSGT00940000155527.j.a	ENSGT00940000154658.a	ENSGT00390000017010	ENSGT00940000156823.e
Lumpfish	MODERN SPECIES	9	ENSCLMG00005011285	ENSCLMG00005011284	ENSCLMG00005011283	ENSCLMG00005011282	ENSCLMG00005011280	larp7 (ENSCLMG00005011279)	etnppl (ENSCLMG00005011277)	ostc (ENSCLMG00005011274)	rpl34 (ENSCLMG00005011271)	SLC24A2 (ENSCLMG00005011128)	sepsecs (ENSCLMG00005011113)	lgi2a (ENSCLMG00005011108)	ENSCLMG00005011106	ccdc149a (ENSCLMG00005011105)	ENSCLMG00005011100	PPARGC1A (ENSCLMG00005010970) #22	ENSCLMG00005010965	gba3 (ENSCLMG00005010964) #23	ADGRA3 (ENSCLMG00005010962) #24	KCNIP4 (ENSCLMG00005010960)	sec24d (ENSCLMG00005006504)	SYNPO2 (ENSCLMG00005006493)	myoz2a (ENSCLMG00005006455)	USP53 (ENSCLMG00005006452)	ENSCLMG00005006450	PTPRD (ENSCLMG00005006368)	TYRP1 (ENSCLMG00005006363)	LURAP1L (ENSCLMG00005006362)	ENSCLMG00005006360	ENSCLMG00005006356	ADGRL3 (ENSCLMG00005006125)
Stickleback	MODERN SPECIES	7	DENND4C (ENSGACG00000019650)	ENSGACG00000019649	plin2 (ENSGACG00000019638)	ENSGACG00000019629	larp7 (ENSGACG00000019618)	etnppl (ENSGACG00000019605)	ostc (ENSGACG00000019601)	rpl34 (ENSGACG00000019593)	ENSGACG00000019590	sepsecs (ENSGACG00000019587)	lgi2a (ENSGACG00000019575)	ENSGACG00000019574	ENSGACG00000019573	ccdc149a (ENSGACG00000019569)	ENSGACG00000019549	PPARGC1A (ENSGACG00000019546) #22	gba3 (ENSGACG00000019544) #23	ADGRA3 (ENSGACG00000019543) #24	KCNIP4 (ENSGACG00000019541)	ENSGACG00000019539	sec24d (ENSGACG00000019537)	SYNPO2 (ENSGACG00000019536)	myoz2a (ENSGACG00000019535)	USP53 (ENSGACG00000019533)	PTPRD (ENSGACG00000019528)	TYRP1 (ENSGACG00000019503)	LURAP1L (ENSGACG00000019502)	MPDZ (ENSGACG00000019499)	ADGRL3 (ENSGACG00000019498)	ENSGACG00000019493	CAAP1 (ENSGACG00000019489)
Tetraodontidae	ANCESTRAL SPECIES	29		ENSGT00390000013693	ENSGT00530000063652.a.a	ENSGT00940000156306	ENSGT00950000182916.a.b.a.b	ENSGT00940000158006	ENSGT00550000074944	ENSGT00940000159642.e	ENSGT01100000263573.a.a.b	ENSGT00940000159823	ENSGT00940000157910	ENSGT00390000001376	ENSGT00390000008294	ENSGT00940000157294.d	ENSGT00390000015958.d	ENSGT00950000183137.b.a #22	ENSGT00940000160460 #23	ENSGT00940000158985	ENSGT00950000182924.A.b.a.b	ENSGT00950000183054.a.a.a.a	ENSGT00950000183027.b.b	ENSGT00940000156337.c	ENSGT00940000153617.B	ENSGT00940000155804.k.a	ENSGT00530000063790.b	ENSGT00940000155527.j.a	ENSGT00390000017010	ENSGT00940000160640	ENSGT00800000124172.i	ENSGT00940000159617	ENSGT00390000017890.b.b
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	MACF1 (ENSTNIG00000006990)	bmp8a (ENSTNIG00000006989)	gsk3aa (ENSTNIG00000006988)	erf (ENSTNIG00000006987)	POU2F2 (ENSTNIG00000006986)	ENSTNIG00000003917	ENSTNIG00000005121	ezh2 (ENSTNIG00000004151)	ssr1 (ENSTNIG00000004152)	ENSTNIG00000004153	ENSTNIG00000005764	ENSTNIG00000001248	ENSTNIG00000011327	sepsecs (ENSTNIG00000011326)	PPARGC1A (ENSTNIG00000011325) #22	ENSTNIG00000002174 #22	gba3 (ENSTNIG00000002058) #23	KCNIP4 (ENSTNIG00000011324)	sec24d (ENSTNIG00000011323)	SYNPO2 (ENSTNIG00000011322)	myoz2a (ENSTNIG00000011321)	USP53 (ENSTNIG00000011320)	PTPRD (ENSTNIG00000011319)	TYRP1 (ENSTNIG00000011318)	LURAP1L (ENSTNIG00000011317)	MPDZ (ENSTNIG00000011316)	ADGRL3 (ENSTNIG00000011315)	ENSTNIG00000011314	CAAP1 (ENSTNIG00000011313)	elavl2 (ENSTNIG00000011312)	ENSTNIG00000019442
Tetraodon	MODERN SPECIES	26	ndufs5 (ENSTNIG00000006930)	MACF1 (ENSTNIG00000006990)	bmp8a (ENSTNIG00000006989)	gsk3aa (ENSTNIG00000006988)	erf (ENSTNIG00000006987)	POU2F2 (ENSTNIG00000006986)	ENSTNIG00000003917	ENSTNIG00000005121	ezh2 (ENSTNIG00000004151)	ssr1 (ENSTNIG00000004152)	ENSTNIG00000004153	ENSTNIG00000005764	ENSTNIG00000001248	ENSTNIG00000011327	sepsecs (ENSTNIG00000011326)	PPARGC1A (ENSTNIG00000011325) #22	ENSTNIG00000002174 #22	gba3 (ENSTNIG00000002058) #23	KCNIP4 (ENSTNIG00000011324)	sec24d (ENSTNIG00000011323)	SYNPO2 (ENSTNIG00000011322)	myoz2a (ENSTNIG00000011321)	USP53 (ENSTNIG00000011320)	PTPRD (ENSTNIG00000011319)	TYRP1 (ENSTNIG00000011318)	LURAP1L (ENSTNIG00000011317)	MPDZ (ENSTNIG00000011316)	ADGRL3 (ENSTNIG00000011315)	ENSTNIG00000011314	CAAP1 (ENSTNIG00000011313)	elavl2 (ENSTNIG00000011312)
Fugu	MODERN SPECIES	20	ENSTRUG00000026958	NFIB (ENSTRUG00000001510)	zdhhc21 (ENSTRUG00000002191)	plaa (ENSTRUG00000002447)	plin2 (ENSTRUG00000004201)	ENSTRUG00000023787	ENSTRUG00000004922	ENSTRUG00000027701	COL25A1 (ENSTRUG00000026946)	etnppl (ENSTRUG00000005557)	ostc (ENSTRUG00000005991)	rpl34 (ENSTRUG00000026991)	ENSTRUG00000006161	lgi2a (ENSTRUG00000006766)	ccdc149a (ENSTRUG00000030376)	PPARGC1A (ENSTRUG00000007210) #22	ENSTRUG00000033268	gba3 (ENSTRUG00000007509) #23	KCNIP4 (ENSTRUG00000032857)	sec24d (ENSTRUG00000008125)	SYNPO2 (ENSTRUG00000019819)	myoz2a (ENSTRUG00000008669)	USP53 (ENSTRUG00000025974)	ENSTRUG00000031970	ENSTRUG00000033349	PTPRD (ENSTRUG00000008887)	TYRP1 (ENSTRUG00000012615)	LURAP1L (ENSTRUG00000020323)	ADGRL3 (ENSTRUG00000002392)	CAAP1 (ENSTRUG00000007809)	ENSTRUG00000031453
Pinecone sodierfish	MODERN SPECIES	9	plin2 (ENSMMDG00005015658)	ENSMMDG00005015650	ENSMMDG00005015643	larp7 (ENSMMDG00005015539)	ENSMMDG00005015532	etnppl (ENSMMDG00005015514)	ostc (ENSMMDG00005015507)	rpl34 (ENSMMDG00005015504)	SLC24A2 (ENSMMDG00005015428)	sepsecs (ENSMMDG00005015418)	lgi2a (ENSMMDG00005015413)	ENSMMDG00005015399	ccdc149a (ENSMMDG00005015256)	sod3a (ENSMMDG00005015252)	ENSMMDG00005014665	PPARGC1A (ENSMMDG00005014661) #22	gba3 (ENSMMDG00005014659) #23	ADGRA3 (ENSMMDG00005013961) #24	KCNIP4 (ENSMMDG00005013889)	sec24d (ENSMMDG00005013882)	SYNPO2 (ENSMMDG00005013867)	myoz2a (ENSMMDG00005013846)	USP53 (ENSMMDG00005013843)	PTPRD (ENSMMDG00005013826)	TYRP1 (ENSMMDG00005013822)	LURAP1L (ENSMMDG00005013820)	MPDZ (ENSMMDG00005013814)	ADGRL3 (ENSMMDG00005011905)	ENSMMDG00005011884	CAAP1 (ENSMMDG00005011878)	elavl2 (ENSMMDG00005011843)
Spotted gar	MODERN SPECIES	670	ENSLOCG00000012228	dnajb14 (ENSLOCG00000012236)	CFI (ENSLOCG00000012242)	pla2g12a (ENSLOCG00000012254)	casp6a (ENSLOCG00000012266)	MCUB (ENSLOCG00000012272)	lef1 (ENSLOCG00000012276)	hadh (ENSLOCG00000012288)	cyp2u1 (ENSLOCG00000012294)	trmt10a (ENSLOCG00000012298)	mttp (ENSLOCG00000012306)	lgi2b (ENSLOCG00000012324)	ccdc149b (ENSLOCG00000012328)	sod3a (ENSLOCG00000018062)	dhx15 (ENSLOCG00000012339)	PPARGC1A (ENSLOCG00000012350) #22	gba3 (ENSLOCG00000012360) #23	ADGRA3 (ENSLOCG00000012367) #24	ENSLOCG00000012371	gabra4 (ENSLOCG00000012374)	ENSLOCG00000012380	ENSLOCG00000012384	GABRG1 (ENSLOCG00000012390)	ENSLOCG00000018064	GUF1 (ENSLOCG00000012397)	ENSLOCG00000012405	YIPF7 (ENSLOCG00000012414)	kctd8 (ENSLOCG00000018066)	ENSLOCG00000018068	ENSLOCG00000012418	ENSLOCG00000012424
Reedfish	MODERN SPECIES	13	htra3a (ENSECRG00000002082)	ENSECRG00000002136	ENSECRG00000002176	ENSECRG00000002203	ENSECRG00000002306	ENSECRG00000002558	zcchc4 (ENSECRG00000002591)	ENSECRG00000002629	ENSECRG00000002646	pi4k2b (ENSECRG00000002660)	sepsecs (ENSECRG00000002685)	lgi2b (ENSECRG00000002746)	ccdc149b (ENSECRG00000002777)	sod3a (ENSECRG00000002796)	dhx15 (ENSECRG00000002829)	PPARGC1A (ENSECRG00000002852) #22	ENSECRG00000002862	gba3 (ENSECRG00000002869) #23	ENSECRG00000002874	ADGRA3 (ENSECRG00000002915) #24	ENSECRG00000003005	KCNIP4 (ENSECRG00000003040)	PACRGL (ENSECRG00000003085)	slit2 (ENSECRG00000003116)	ENSECRG00000003171	ENSECRG00000003198	ncapg (ENSECRG00000003222)	ENSECRG00000003249	ENSECRG00000003262	med28 (ENSECRG00000003283)	lap3 (ENSECRG00000003303)