Bilateria	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b #22
Chordata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a #22
Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.a #22
Euteleostomi	ANCESTRAL SPECIES	595																ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00390000002799	ENSGT00940000157203	ENSGT00940000158423
Sarcopterygii	ANCESTRAL SPECIES	246		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000163785.a.a.b	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000165419	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471
Tetrapoda	ANCESTRAL SPECIES	106			ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000159348	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00390000018360
Amniota	ANCESTRAL SPECIES	28	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000154969.a	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000171776
Mammalia	ANCESTRAL SPECIES	25	ENSGT00530000064050 #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Theria	ANCESTRAL SPECIES	3	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Eutheria	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Glires	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Rodentia	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Myomorpha	ANCESTRAL SPECIES	12	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Lesser Egyptian jerboa	MODERN SPECIES	141	Zfp687 (ENSJJAG00000022366) #7	Psmd4 (ENSJJAG00000014800) #8	Vps72 (ENSJJAG00000018920) #9	Tmod4 (ENSJJAG00000018274) #10	ENSJJAG00000023316 #11	Tnfaip8l2 (ENSJJAG00000002492) #12	Sema6c (ENSJJAG00000017651) #13	ENSJJAG00000021969 #14	Mllt11 (ENSJJAG00000003830) #15	Cdc42se1 (ENSJJAG00000022380) #16	Gm128 (ENSJJAG00000018318) #17	Bnipl (ENSJJAG00000008532) #18	Prune1 (ENSJJAG00000000407) #19	Mindy1 (ENSJJAG00000019978) #20	Anxa9 (ENSJJAG00000000351) #21	Cers2 (ENSJJAG00000018607) #22	ENSJJAG00000024061 #23	ENSJJAG00000015592 #24	Ctsk (ENSJJAG00000009558) #25	Ctss (ENSJJAG00000020021) #26	Hormad1 (ENSJJAG00000021739) #27	Tars2 (ENSJJAG00000021883) #28	ENSJJAG00000016344 #29	Car14 (ENSJJAG00000021119) #30	ENSJJAG00000017516 #31	Plekho1 (ENSJJAG00000013141) #32
Muroidea	ANCESTRAL SPECIES	6	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Murinae	ANCESTRAL SPECIES	5	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Mus	ANCESTRAL SPECIES	7	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.v	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.v	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Mouse	MODERN SPECIES	12	Pip5k1a (ENSMUSG00000028126)	Vps72 (ENSMUSG00000008958) #9	Tmod4 (ENSMUSG00000005628) #10	Scnm1 (ENSMUSG00000092607) #11	Lysmd1 (ENSMUSG00000053769)	Tnfaip8l2 (ENSMUSG00000013707) #12	Sema6c (ENSMUSG00000038777) #13	Gabpb2 (ENSMUSG00000038766) #14	Mllt11 (ENSMUSG00000053192) #15	Cdc42se1 (ENSMUSG00000046722) #16	Gm128 (ENSMUSG00000068860) #17	Bnipl (ENSMUSG00000028115) #18	Prune1 (ENSMUSG00000015711) #19	Mindy1 (ENSMUSG00000038712) #20	Anxa9 (ENSMUSG00000015702) #21	Cers2 (ENSMUSG00000015714) #22	Setdb1 (ENSMUSG00000015697)	Ctxnd2 (ENSMUSG00000105734)	Arnt (ENSMUSG00000015522) #24	Ctsk (ENSMUSG00000028111) #25	Ctss (ENSMUSG00000038642) #26	Hormad1 (ENSMUSG00000028109) #27	Golph3l (ENSMUSG00000046519)	Ensa (ENSMUSG00000038619)	Mcl1 (ENSMUSG00000038612)	Adamtsl4 (ENSMUSG00000015850)	Ecm1 (ENSMUSG00000028108)	Tars2 (ENSMUSG00000028107) #28	Rprd2 (ENSMUSG00000028106)	Prpf3 (ENSMUSG00000015748)	Mrps21 (ENSMUSG00000054312)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000170759	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.v	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Steppe mouse	MODERN SPECIES	3111	Pip5k1a (ENSMSIG00000004412)	ENSMSIG00000004624	Tmod4 (ENSMSIG00000004640) #10	Scnm1 (ENSMSIG00000004699) #11	Lysmd1 (ENSMSIG00000004745)	Tnfaip8l2 (ENSMSIG00000004763) #12	Sema6c (ENSMSIG00000004785) #13	Gabpb2 (ENSMSIG00000005022) #14	Mllt11 (ENSMSIG00000005094) #15	Cdc42se1 (ENSMSIG00000005109) #16	Gm128 (ENSMSIG00000005144) #17	Bnipl (ENSMSIG00000005186) #18	Prune1 (ENSMSIG00000005284) #19	Mindy1 (ENSMSIG00000005316) #20	Anxa9 (ENSMSIG00000005379) #21	Cers2 (ENSMSIG00000005476) #22	Setdb1 (ENSMSIG00000005513)	Ctxnd2 (ENSMSIG00000005609)	ENSMSIG00000005661	ENSMSIG00000005664	Arnt (ENSMSIG00000005683) #24	Ctsk (ENSMSIG00000005966) #25	Ctss (ENSMSIG00000005997) #26	ENSMSIG00000006052 #27	Golph3l (ENSMSIG00000006388)	Ensa (ENSMSIG00000006584)	Mcl1 (ENSMSIG00000006604)	Adamtsl4 (ENSMSIG00000006628)	Ecm1 (ENSMSIG00000006669)	Tars2 (ENSMSIG00000006741) #28	Rprd2 (ENSMSIG00000007289)
spretus	MODERN SPECIES	12	Vps72 (MGP_SPRETEiJ_G0026270) #9	Tmod4 (MGP_SPRETEiJ_G0026271) #10	Scnm1 (MGP_SPRETEiJ_G0026272) #11	MGP_SPRETEiJ_G0026273	MGP_SPRETEiJ_G0026274	Tnfaip8l2 (MGP_SPRETEiJ_G0026275) #12	Sema6c (MGP_SPRETEiJ_G0026276) #13	Gabpb2 (MGP_SPRETEiJ_G0026277) #14	Mllt11 (MGP_SPRETEiJ_G0026278) #15	Cdc42se1 (MGP_SPRETEiJ_G0026279) #16	Gm128 (MGP_SPRETEiJ_G0026280) #17	Bnipl (MGP_SPRETEiJ_G0026281) #18	Prune1 (MGP_SPRETEiJ_G0026282) #19	Mindy1 (MGP_SPRETEiJ_G0026283) #20	Anxa9 (MGP_SPRETEiJ_G0026284) #21	Cers2 (MGP_SPRETEiJ_G0026285) #22	Arnt (MGP_SPRETEiJ_G0026287) #24	Ctsk (MGP_SPRETEiJ_G0026288) #25	Ctss (MGP_SPRETEiJ_G0026289) #26	MGP_SPRETEiJ_G0026290 #27	MGP_SPRETEiJ_G0026291	Ensa (MGP_SPRETEiJ_G0026292)	Mcl1 (MGP_SPRETEiJ_G0026293)	Adamtsl4 (MGP_SPRETEiJ_G0026294)	Ecm1 (MGP_SPRETEiJ_G0026295)	Tars2 (MGP_SPRETEiJ_G0026296) #28	Rprd2 (MGP_SPRETEiJ_G0026297)	Prpf3 (MGP_SPRETEiJ_G0026298)	Mrps21 (MGP_SPRETEiJ_G0026299)	Ciart (MGP_SPRETEiJ_G0026300)	BC028528 (MGP_SPRETEiJ_G0026301)
Ryukyu mouse	MODERN SPECIES	12	Vps72 (MGP_CAROLIEiJ_G0025326) #9	Tmod4 (MGP_CAROLIEiJ_G0025327) #10	MGP_CAROLIEiJ_G0025328 #11	MGP_CAROLIEiJ_G0025329	MGP_CAROLIEiJ_G0025330	Tnfaip8l2 (MGP_CAROLIEiJ_G0025331) #12	Sema6c (MGP_CAROLIEiJ_G0025332) #13	MGP_CAROLIEiJ_G0025333 #14	Mllt11 (MGP_CAROLIEiJ_G0025334) #15	Cdc42se1 (MGP_CAROLIEiJ_G0025335) #16	Gm128 (MGP_CAROLIEiJ_G0025336) #17	Bnipl (MGP_CAROLIEiJ_G0025337) #18	Prune1 (MGP_CAROLIEiJ_G0025338) #19	Mindy1 (MGP_CAROLIEiJ_G0025339) #20	Anxa9 (MGP_CAROLIEiJ_G0025340) #21	Cers2 (MGP_CAROLIEiJ_G0025341) #22	Setdb1 (MGP_CAROLIEiJ_G0025342)	Arnt (MGP_CAROLIEiJ_G0025343) #24	Ctsk (MGP_CAROLIEiJ_G0025344) #25	Ctss (MGP_CAROLIEiJ_G0025345) #26	Hormad1 (MGP_CAROLIEiJ_G0025346) #27	MGP_CAROLIEiJ_G0025347	Ensa (MGP_CAROLIEiJ_G0025348)	Mcl1 (MGP_CAROLIEiJ_G0025349)	Adamtsl4 (MGP_CAROLIEiJ_G0025350)	Ecm1 (MGP_CAROLIEiJ_G0025351)	Tars2 (MGP_CAROLIEiJ_G0025352) #28	Rprd2 (MGP_CAROLIEiJ_G0025353)	Prpf3 (MGP_CAROLIEiJ_G0025354)	Mrps21 (MGP_CAROLIEiJ_G0025355)	MGP_CAROLIEiJ_G0025356
Shrew mouse	MODERN SPECIES	17	Vps72 (MGP_PahariEiJ_G0026770) #9	Tmod4 (MGP_PahariEiJ_G0026771) #10	Scnm1 (MGP_PahariEiJ_G0026772) #11	MGP_PahariEiJ_G0026773	MGP_PahariEiJ_G0026774	Tnfaip8l2 (MGP_PahariEiJ_G0026775) #12	Sema6c (MGP_PahariEiJ_G0026776) #13	MGP_PahariEiJ_G0026777 #14	Mllt11 (MGP_PahariEiJ_G0026778) #15	Cdc42se1 (MGP_PahariEiJ_G0026779) #16	Gm128 (MGP_PahariEiJ_G0026780) #17	Bnipl (MGP_PahariEiJ_G0026781) #18	Prune1 (MGP_PahariEiJ_G0026782) #19	Mindy1 (MGP_PahariEiJ_G0026783) #20	Anxa9 (MGP_PahariEiJ_G0026784) #21	Cers2 (MGP_PahariEiJ_G0026785) #22	Arnt (MGP_PahariEiJ_G0026787) #24	Ctsk (MGP_PahariEiJ_G0026788) #25	Ctss (MGP_PahariEiJ_G0026789) #26	Hormad1 (MGP_PahariEiJ_G0026790) #27	Golph3l (MGP_PahariEiJ_G0026791)	Ensa (MGP_PahariEiJ_G0026792)	Mcl1 (MGP_PahariEiJ_G0026793)	Adamtsl4 (MGP_PahariEiJ_G0026794)	Ecm1 (MGP_PahariEiJ_G0026795)	Tars2 (MGP_PahariEiJ_G0026796) #28	Rprd2 (MGP_PahariEiJ_G0026797)	Prpf3 (MGP_PahariEiJ_G0026798)	Mrps21 (MGP_PahariEiJ_G0026799)	Ciart (MGP_PahariEiJ_G0026800)	BC028528 (MGP_PahariEiJ_G0026801)
Rat	MODERN SPECIES	11	Zfp687 (ENSRNOG00000021026) #7	Psmd4 (ENSRNOG00000021042) #8	Pip5k1a (ENSRNOG00000021068)	Vps72 (ENSRNOG00000021081) #9	Tmod4 (ENSRNOG00000021088) #10	Scnm1 (ENSRNOG00000021092) #11	Lysmd1 (ENSRNOG00000021099)	Tnfaip8l2 (ENSRNOG00000021100) #12	Sema6c (ENSRNOG00000021101) #13	Gabpb2 (ENSRNOG00000021105) #14	C2h1orf56 (ENSRNOG00000021656) #17	Bnipl (ENSRNOG00000021116) #18	Prune1 (ENSRNOG00000021120) #19	Mindy1 (ENSRNOG00000021131) #20	Anxa9 (ENSRNOG00000021134) #21	Cers2 (ENSRNOG00000021138) #22	Setdb1 (ENSRNOG00000021143)	Arnt (ENSRNOG00000031174) #24	Ctsk (ENSRNOG00000021155) #25	Ctss (ENSRNOG00000021157) #26	Hormad1 (ENSRNOG00000021160) #27	Golph3l (ENSRNOG00000047620)	Ensa (ENSRNOG00000048617)	Mcl1 (ENSRNOG00000063678)	Adamtsl4 (ENSRNOG00000049385)	Ecm1 (ENSRNOG00000021166)	Tars2 (ENSRNOG00000057194) #28	Rprd2 (ENSRNOG00000054294)	Prpf3 (ENSRNOG00000025629)	Mrps21 (ENSRNOG00000024845)	Ciart (ENSRNOG00000042717)
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.u	ENSGT00390000018360
Cricetidae_B	ANCESTRAL SPECIES	3	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.v.a.b	ENSGT00500000045038.u
Northern American deer mouse	MODERN SPECIES	19	Vps72 (ENSPEMG00000002405) #9	Tmod4 (ENSPEMG00000014116) #10	Scnm1 (ENSPEMG00000023042) #11	Lysmd1 (ENSPEMG00000029321)	Tnfaip8l2 (ENSPEMG00000017636) #12	Sema6c (ENSPEMG00000024024) #13	Gabpb2 (ENSPEMG00000016588) #14	Mllt11 (ENSPEMG00000030271) #15	Cdc42se1 (ENSPEMG00000029475) #16	Gm128 (ENSPEMG00000024273) #17	Bnipl (ENSPEMG00000010539) #18	Prune1 (ENSPEMG00000028397) #19	Mindy1 (ENSPEMG00000009924) #20	Anxa9 (ENSPEMG00000011713) #21	ENSPEMG00000030061	Cers2 (ENSPEMG00000016044) #22	Setdb1 (ENSPEMG00000010553)	Arnt (ENSPEMG00000029682) #24	Ctsk (ENSPEMG00000001057) #25	Ctss (ENSPEMG00000009697) #26	Hormad1 (ENSPEMG00000012403) #27	Golph3l (ENSPEMG00000029486)	Ensa (ENSPEMG00000024023)	ENSPEMG00000031072	Adamtsl4 (ENSPEMG00000008970)	Ecm1 (ENSPEMG00000016753)	Tars2 (ENSPEMG00000014203) #28	Rprd2 (ENSPEMG00000013381)	ENSPEMG00000024405	Prpf3 (ENSPEMG00000011672)	ENSPEMG00000030510
Prairie vole	MODERN SPECIES	8	Pip5k1a (ENSMOCG00000004262)	Vps72 (ENSMOCG00000013004) #9	Tmod4 (ENSMOCG00000012934) #10	Scnm1 (ENSMOCG00000008260) #11	Lysmd1 (ENSMOCG00000006887)	Tnfaip8l2 (ENSMOCG00000020387) #12	Sema6c (ENSMOCG00000015540) #13	Gabpb2 (ENSMOCG00000020822) #14	Mllt11 (ENSMOCG00000019439) #15	ENSMOCG00000018578 #16	Gm128 (ENSMOCG00000000577) #17	Bnipl (ENSMOCG00000013338) #18	Prune1 (ENSMOCG00000007764) #19	Mindy1 (ENSMOCG00000021873) #20	Anxa9 (ENSMOCG00000000205) #21	Cers2 (ENSMOCG00000001144) #22	Setdb1 (ENSMOCG00000017407)	Arnt (ENSMOCG00000001627) #24	Ctsk (ENSMOCG00000022513) #25	Ctss (ENSMOCG00000022241) #26	Hormad1 (ENSMOCG00000018601) #27	Golph3l (ENSMOCG00000018491)	Ensa (ENSMOCG00000017464)	Mcl1 (ENSMOCG00000000395)	Adamtsl4 (ENSMOCG00000008356)	Ecm1 (ENSMOCG00000019294)	Tars2 (ENSMOCG00000018432) #28	ENSMOCG00000013494	Prpf3 (ENSMOCG00000000242)	ENSMOCG00000004675	Ciart (ENSMOCG00000020599)
Cricetinae	ANCESTRAL SPECIES	12	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.u	ENSGT00390000018360
Chinese hamster chok1gshd	MODERN SPECIES	66	Pip5k1a (ENSCGRG00001009588)	Vps72 (ENSCGRG00001017696) #9	Tmod4 (ENSCGRG00001019854) #10	Scnm1 (ENSCGRG00001006323) #11	Lysmd1 (ENSCGRG00001007524)	Tnfaip8l2 (ENSCGRG00001010397) #12	Sema6c (ENSCGRG00001003943) #13	Gabpb2 (ENSCGRG00001013536) #14	Mllt11 (ENSCGRG00001003537) #15	Cdc42se1 (ENSCGRG00001000423) #16	Gm128 (ENSCGRG00001021721) #17	Bnipl (ENSCGRG00001024336) #18	Prune1 (ENSCGRG00001013833) #19	Mindy1 (ENSCGRG00001015953) #20	Anxa9 (ENSCGRG00001018214) #21	Cers2 (ENSCGRG00001014039) #22	Setdb1 (ENSCGRG00001010822)	Ctxnd2 (ENSCGRG00001010032)	ENSCGRG00001022347	Arnt (ENSCGRG00001020065) #24	Ctsk (ENSCGRG00001018122) #25	Ctss (ENSCGRG00001009630) #26	Hormad1 (ENSCGRG00001016359) #27	Golph3l (ENSCGRG00001000763)	Ensa (ENSCGRG00001022170)	Mcl1 (ENSCGRG00001017446)	Adamtsl4 (ENSCGRG00001017255)	ENSCGRG00001003470	Ecm1 (ENSCGRG00001009335)	Tars2 (ENSCGRG00001023517) #28	Rprd2 (ENSCGRG00001021587)
Golden Hamster	MODERN SPECIES	782	Psmd4 (ENSMAUG00000019832) #8	Vps72 (ENSMAUG00000005849) #9	Tmod4 (ENSMAUG00000016821) #10	Scnm1 (ENSMAUG00000021081) #11	Lysmd1 (ENSMAUG00000019865)	Tnfaip8l2 (ENSMAUG00000017288) #12	Sema6c (ENSMAUG00000019207) #13	Gabpb2 (ENSMAUG00000015210) #14	Mllt11 (ENSMAUG00000018228) #15	Cdc42se1 (ENSMAUG00000000575) #16	ENSMAUG00000014653 #17	Bnipl (ENSMAUG00000008535) #18	Prune1 (ENSMAUG00000000710) #19	Mindy1 (ENSMAUG00000020108) #20	Anxa9 (ENSMAUG00000021724) #21	Cers2 (ENSMAUG00000015178) #22	Setdb1 (ENSMAUG00000021391)	ENSMAUG00000009522 #24	Ctsk (ENSMAUG00000019242) #25	Ctss (ENSMAUG00000021301) #26	Hormad1 (ENSMAUG00000020053) #27	Golph3l (ENSMAUG00000012523)	Ensa (ENSMAUG00000008619)	Mcl1 (ENSMAUG00000007430)	Adamtsl4 (ENSMAUG00000014851)	Ecm1 (ENSMAUG00000016262)	Tars2 (ENSMAUG00000008184) #28	Rprd2 (ENSMAUG00000019875)	Prpf3 (ENSMAUG00000017112)	ENSMAUG00000014535	ENSMAUG00000001664 #29
Upper Galilee mountains blind mole rat	MODERN SPECIES	593	Pip5k1a (ENSNGAG00000001294)	Vps72 (ENSNGAG00000022821) #9	Tmod4 (ENSNGAG00000002605) #10	Scnm1 (ENSNGAG00000005774) #11	Lysmd1 (ENSNGAG00000007843)	Tnfaip8l2 (ENSNGAG00000011818) #12	Sema6c (ENSNGAG00000020194) #13	ENSNGAG00000021741 #14	Mllt11 (ENSNGAG00000002849) #15	Cdc42se1 (ENSNGAG00000010539) #16	Gm128 (ENSNGAG00000015278) #17	Bnipl (ENSNGAG00000001458) #18	Prune1 (ENSNGAG00000019947) #19	Mindy1 (ENSNGAG00000020364) #20	Anxa9 (ENSNGAG00000015153) #21	Cers2 (ENSNGAG00000016719) #22	Setdb1 (ENSNGAG00000020151)
Kangaroo rat	MODERN SPECIES	345	Pip5k1a (ENSDORG00000010363)	Vps72 (ENSDORG00000010360) #9	Tmod4 (ENSDORG00000010358) #10	Scnm1 (ENSDORG00000010356) #11	Lysmd1 (ENSDORG00000028528)	Tnfaip8l2 (ENSDORG00000024206) #12	Sema6c (ENSDORG00000015324) #13	Gabpb2 (ENSDORG00000005828) #14	Mllt11 (ENSDORG00000030219) #15	Cdc42se1 (ENSDORG00000007370) #16	ENSDORG00000026052 #17	Bnipl (ENSDORG00000007368) #18	Prune1 (ENSDORG00000007367) #19	Mindy1 (ENSDORG00000007366) #20	Anxa9 (ENSDORG00000009615) #21	Cers2 (ENSDORG00000006831) #22	Setdb1 (ENSDORG00000006830)	ENSDORG00000023883 #24	Ctsk (ENSDORG00000027450) #25	Ctss (ENSDORG00000011000) #26	Hormad1 (ENSDORG00000008931) #27	Golph3l (ENSDORG00000024987)	Ensa (ENSDORG00000011425)	Mcl1 (ENSDORG00000011424)	Adamtsl4 (ENSDORG00000000397)	Ecm1 (ENSDORG00000007570)	Tars2 (ENSDORG00000007569) #28	Rprd2 (ENSDORG00000023813)	Prpf3 (ENSDORG00000008664)	Mrps21 (ENSDORG00000030111)	ENSDORG00000025269 #29
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895.i.a #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.q.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Marmotini	ANCESTRAL SPECIES	33	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895.i.a #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.q.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.r
Alpin marmot	MODERN SPECIES	85	PIP5K1A (ENSMMMG00000018855)	VPS72 (ENSMMMG00000018907) #9	TMOD4 (ENSMMMG00000018917) #10	SCNM1 (ENSMMMG00000018931) #11	LYSMD1 (ENSMMMG00000018943)	TNFAIP8L2 (ENSMMMG00000018952) #12	SEMA6C (ENSMMMG00000018987) #13	GABPB2 (ENSMMMG00000019037) #14	ENSMMMG00000019054 #15	CDC42SE1 (ENSMMMG00000019055) #16	C1orf56 (ENSMMMG00000019063) #17	BNIPL (ENSMMMG00000019067) #18	PRUNE1 (ENSMMMG00000019091) #19	MINDY1 (ENSMMMG00000019104) #20	ANXA9 (ENSMMMG00000019113) #21	CERS2 (ENSMMMG00000019137) #22	SETDB1 (ENSMMMG00000019144)	CTXND2 (ENSMMMG00000019184)	ARNT (ENSMMMG00000019205) #24	CTSK (ENSMMMG00000019259) #25	CTSS (ENSMMMG00000019262) #26	HORMAD1 (ENSMMMG00000019288) #27	GOLPH3L (ENSMMMG00000019322)	ENSMMMG00000019337	ADAMTSL4 (ENSMMMG00000019345)	ECM1 (ENSMMMG00000019374)	TARS2 (ENSMMMG00000019396) #28	RPRD2 (ENSMMMG00000019468)	PRPF3 (ENSMMMG00000019495)	CIART (ENSMMMG00000019509)	C1orf54 (ENSMMMG00000019516)
Marmotini_b	ANCESTRAL SPECIES	77	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895.i.a #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.q.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.r
Squirrel	MODERN SPECIES	180	PIP5K1A (ENSSTOG00000000599)	VPS72 (ENSSTOG00000025406) #9	TMOD4 (ENSSTOG00000000592) #10	SCNM1 (ENSSTOG00000000590) #11	LYSMD1 (ENSSTOG00000000588)	TNFAIP8L2 (ENSSTOG00000000585) #12	GABPB2 (ENSSTOG00000000567) #14	SEMA6C (ENSSTOG00000000573) #13	ENSSTOG00000026549 #15	CDC42SE1 (ENSSTOG00000032349) #16	ENSSTOG00000021284 #17	BNIPL (ENSSTOG00000006902) #18	PRUNE1 (ENSSTOG00000006879) #19	MINDY1 (ENSSTOG00000006840) #20	ANXA9 (ENSSTOG00000006824) #21	CERS2 (ENSSTOG00000006797) #22	SETDB1 (ENSSTOG00000006770)	ARNT (ENSSTOG00000013876) #24	CTSK (ENSSTOG00000013868) #25	CTSS (ENSSTOG00000021432) #26	HORMAD1 (ENSSTOG00000002768) #27	GOLPH3L (ENSSTOG00000002747)	ENSA (ENSSTOG00000002742)	MCL1 (ENSSTOG00000027465)	ADAMTSL4 (ENSSTOG00000024198)	ECM1 (ENSSTOG00000008340)	TARS2 (ENSSTOG00000008311) #28	RPRD2 (ENSSTOG00000001895)	PRPF3 (ENSSTOG00000001889)	ENSSTOG00000019516	ENSSTOG00000024097 #29
Arctic ground squirrel	MODERN SPECIES	298	PIP5K1A (ENSUPAG00010004093)	VPS72 (ENSUPAG00010004077) #9	TMOD4 (ENSUPAG00010004052) #10	SCNM1 (ENSUPAG00010004024) #11	ENSUPAG00010004016	TNFAIP8L2 (ENSUPAG00010004011) #12	SEMA6C (ENSUPAG00010003983) #13	GABPB2 (ENSUPAG00010003948) #14	ENSUPAG00010003938 #15	CDC42SE1 (ENSUPAG00010003923) #16	C1orf56 (ENSUPAG00010003917) #17	BNIPL (ENSUPAG00010003858) #18	PRUNE1 (ENSUPAG00010003831) #19	MINDY1 (ENSUPAG00010003812) #20	ANXA9 (ENSUPAG00010003775) #21	CERS2 (ENSUPAG00010003717) #22	SETDB1 (ENSUPAG00010002991)	CTXND2 (ENSUPAG00010002982)	ARNT (ENSUPAG00010002789) #24	CTSK (ENSUPAG00010002778) #25	CTSS (ENSUPAG00010002451) #26	HORMAD1 (ENSUPAG00010002435) #27	ENSA (ENSUPAG00010002412)	MCL1 (ENSUPAG00010002404)	ADAMTSL4 (ENSUPAG00010002294)	ECM1 (ENSUPAG00010002264)	TARS2 (ENSUPAG00010001943) #28	RPRD2 (ENSUPAG00010001879)	PRPF3 (ENSUPAG00010001860)	CIART (ENSUPAG00010001847)	C1orf54 (ENSUPAG00010001839)
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005002164	VPS72 (ENSSVLG00005002112) #9	TMOD4 (ENSSVLG00005002090) #10	SCNM1 (ENSSVLG00005002067) #11	LYSMD1 (ENSSVLG00005002044)	TNFAIP8L2 (ENSSVLG00005002031) #12	SEMA6C (ENSSVLG00005001999) #13	ENSSVLG00005001950 #14	ENSSVLG00005001925 #15	CDC42SE1 (ENSSVLG00005001905) #16	C1orf56 (ENSSVLG00005001885) #17	BNIPL (ENSSVLG00005001858) #18	ENSSVLG00005001812 #19	MINDY1 (ENSSVLG00005001783) #20	ANXA9 (ENSSVLG00005001768) #21	CERS2 (ENSSVLG00005001737) #22	SETDB1 (ENSSVLG00005001698)	CTXND2 (ENSSVLG00005001652)	ARNT (ENSSVLG00005001590) #24	CTSK (ENSSVLG00005001562) #25	CTSS (ENSSVLG00005001527) #26	ENSSVLG00005001503	HORMAD1 (ENSSVLG00005001438) #27	GOLPH3L (ENSSVLG00005001367)	ENSSVLG00005001356	ENSSVLG00005001308	MCL1 (ENSSVLG00005001232)	ADAMTSL4 (ENSSVLG00005001195)	ECM1 (ENSSVLG00005001143)	TARS2 (ENSSVLG00005001101) #28	RPRD2 (ENSSVLG00005001061)
Hystricomorpha	ANCESTRAL SPECIES	23	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Hystricomorpha_a	ANCESTRAL SPECIES	59	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00940000164936 #29
Hystricomorpha_b	ANCESTRAL SPECIES	79	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00900000143229 #23	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00940000164936 #29
Long-tailed chinchilla	MODERN SPECIES	295	PIP5K1A (ENSCLAG00000000473)	VPS72 (ENSCLAG00000000394) #9	SCNM1 (ENSCLAG00000000328) #11	TMOD4 (ENSCLAG00000000301) #10	LYSMD1 (ENSCLAG00000000193)	TNFAIP8L2 (ENSCLAG00000000171) #12	SEMA6C (ENSCLAG00000001760) #13	GABPB2 (ENSCLAG00000001712) #14	ENSCLAG00000001683 #15	CDC42SE1 (ENSCLAG00000001637) #16	C1orf56 (ENSCLAG00000000381) #17	BNIPL (ENSCLAG00000000367) #18	PRUNE1 (ENSCLAG00000000177) #19	MINDY1 (ENSCLAG00000000123) #20	ANXA9 (ENSCLAG00000000291) #21	CERS2 (ENSCLAG00000000260) #22	SETDB1 (ENSCLAG00000000242)	ENSCLAG00000000457 #15	ARNT (ENSCLAG00000000889) #24	CTSK (ENSCLAG00000000173) #25
Degu	MODERN SPECIES	89	PIP5K1A (ENSODEG00000011117)	ENSODEG00000010899 #9	TMOD4 (ENSODEG00000014977) #10	SCNM1 (ENSODEG00000013925) #11	LYSMD1 (ENSODEG00000011246)	TNFAIP8L2 (ENSODEG00000011478) #12	SEMA6C (ENSODEG00000011548) #13	GABPB2 (ENSODEG00000010710) #14	ENSODEG00000012396 #15	CDC42SE1 (ENSODEG00000010472) #16	C1orf56 (ENSODEG00000010338) #17	BNIPL (ENSODEG00000011106) #18	PRUNE1 (ENSODEG00000010818) #19	MINDY1 (ENSODEG00000010980) #20	ANXA9 (ENSODEG00000011014) #21	CERS2 (ENSODEG00000012022) #22	SETDB1 (ENSODEG00000012471)	ENSODEG00000012710	ENSODEG00000012445 #23	ENSODEG00000011559 #24	ENSODEG00000012573 #25	CTSS (ENSODEG00000010580) #26	HORMAD1 (ENSODEG00000012417) #27	GOLPH3L (ENSODEG00000011029)	ENSODEG00000011170	ENSODEG00000013487	ECM1 (ENSODEG00000011744)	TARS2 (ENSODEG00000011883) #28	RPRD2 (ENSODEG00000012617)	ENSODEG00000011363	ENSODEG00000011678
Guinea pig	MODERN SPECIES	2	PIP5K1A (ENSCPOG00000002193)	VPS72 (ENSCPOG00000019331) #9	TMOD4 (ENSCPOG00000037550) #10	SCNM1 (ENSCPOG00000002184) #11	LYSMD1 (ENSCPOG00000036409)	TNFAIP8L2 (ENSCPOG00000034011) #12	SEMA6C (ENSCPOG00000002176) #13	GABPB2 (ENSCPOG00000011789) #14	MLLT11 (ENSCPOG00000036668) #15	CDC42SE1 (ENSCPOG00000036299) #16	C1orf56 (ENSCPOG00000025771) #17	BNIPL (ENSCPOG00000026618) #18	PRUNE1 (ENSCPOG00000001641) #19	MINDY1 (ENSCPOG00000001640) #20	ANXA9 (ENSCPOG00000001639) #21	CERS2 (ENSCPOG00000001637) #22	SETDB1 (ENSCPOG00000001632)	Arnt (ENSCPOG00000014578) #24	CTSK (ENSCPOG00000023854) #25	CTSS (ENSCPOG00000010629) #26	HORMAD1 (ENSCPOG00000006235) #27	GOLPH3L (ENSCPOG00000005605)	ENSA (ENSCPOG00000033807)	MCL1 (ENSCPOG00000040407)	ADAMTSL4 (ENSCPOG00000011954)	ECM1 (ENSCPOG00000010599)	ENSCPOG00000010586 #28	RPRD2 (ENSCPOG00000040179)	PRPF3 (ENSCPOG00000008068)	MRPS21 (ENSCPOG00000020443)	ENSCPOG00000035575 #29
Naked mole-rat female	MODERN SPECIES	10	PIP5K1A (ENSHGLG00000009191)	VPS72 (ENSHGLG00000009189) #9	TMOD4 (ENSHGLG00000010575) #10	SCNM1 (ENSHGLG00000005098) #11	LYSMD1 (ENSHGLG00000005177)	TNFAIP8L2 (ENSHGLG00000005573) #12	SEMA6C (ENSHGLG00000007351) #13	ENSHGLG00000005117 #14	ENSHGLG00000033273	ENSHGLG00000006929 #15	CDC42SE1 (ENSHGLG00000007587) #16	BNIPL (ENSHGLG00000008894) #18	PRUNE1 (ENSHGLG00000009857) #19	MINDY1 (ENSHGLG00000011645) #20	ENSHGLG00000012738 #21	CERS2 (ENSHGLG00000010168) #22	SETDB1 (ENSHGLG00000011098)	CTXND2 (ENSHGLG00000046081)	ENSHGLG00000040159	ARNT (ENSHGLG00000005864) #24	ENSHGLG00000011085 #25	ENSHGLG00000041981	ENSHGLG00000036245	ENSHGLG00000046834	ENSHGLG00000032256	ENSHGLG00000016686	HMGCS2 (ENSHGLG00000016719)	ENSHGLG00000018535	ENSHGLG00000041980	ENSHGLG00000038892 #26	HORMAD1 (ENSHGLG00000013087) #27
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Rabbit	MODERN SPECIES	4	PIP5K1A (ENSOCUG00000015242)	VPS72 (ENSOCUG00000021424) #9	TMOD4 (ENSOCUG00000020919) #10	SCNM1 (ENSOCUG00000026766) #11	LYSMD1 (ENSOCUG00000004722)	TNFAIP8L2 (ENSOCUG00000004719) #12	SEMA6C (ENSOCUG00000002736) #13	GABPB2 (ENSOCUG00000004712) #14	MLLT11 (ENSOCUG00000004821) #15	CDC42SE1 (ENSOCUG00000024314) #16	C1orf56 (ENSOCUG00000004709) #17	BNIPL (ENSOCUG00000004704) #18	PRUNE1 (ENSOCUG00000004699) #19	MINDY1 (ENSOCUG00000004694) #20	ANXA9 (ENSOCUG00000014955) #21	CERS2 (ENSOCUG00000022419) #22	SETDB1 (ENSOCUG00000003642)	CTXND2 (ENSOCUG00000030922)	ARNT (ENSOCUG00000013582) #24	CTSK (ENSOCUG00000011090) #25	CTSS (ENSOCUG00000011085) #26	HORMAD1 (ENSOCUG00000003275) #27	GOLPH3L (ENSOCUG00000032306)	ENSOCUG00000003267	MCL1 (ENSOCUG00000012152)	ADAMTSL4 (ENSOCUG00000000927)	ECM1 (ENSOCUG00000011786)	TARS2 (ENSOCUG00000031561) #28	RPRD2 (ENSOCUG00000011770)	PRPF3 (ENSOCUG00000011760)	ENSOCUG00000027120
Tree shrew	MODERN SPECIES	2122								LYSMD1 (ENSTBEG00000006976)	GABPB2 (ENSTBEG00000006499) #14	CDC42SE1 (ENSTBEG00000006266) #16	C1orf56 (ENSTBEG00000005461) #17	BNIPL (ENSTBEG00000004916) #18	ENSTBEG00000004483 #19	MINDY1 (ENSTBEG00000002408) #20	ANXA9 (ENSTBEG00000001691) #21	CERS2 (ENSTBEG00000001240) #22	SETDB1 (ENSTBEG00000009306)
Primates	ANCESTRAL SPECIES	7	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Bushbaby	MODERN SPECIES	289	PIP5K1A (ENSOGAG00000002846)	VPS72 (ENSOGAG00000006403) #9	TMOD4 (ENSOGAG00000006400) #10	SCNM1 (ENSOGAG00000032806) #11	LYSMD1 (ENSOGAG00000002844)	TNFAIP8L2 (ENSOGAG00000002842) #12	SEMA6C (ENSOGAG00000010363) #13	GABPB2 (ENSOGAG00000010359) #14	MLLT11 (ENSOGAG00000034023) #15	CDC42SE1 (ENSOGAG00000010356) #16	C1orf56 (ENSOGAG00000032399) #17	BNIPL (ENSOGAG00000010350) #18	PRUNE1 (ENSOGAG00000010345) #19	MINDY1 (ENSOGAG00000010340) #20	ANXA9 (ENSOGAG00000010336) #21	CERS2 (ENSOGAG00000010325) #22	SETDB1 (ENSOGAG00000010320)	ENSOGAG00000024502	ARNT (ENSOGAG00000004523) #24	CTSK (ENSOGAG00000004519) #25	CTSS (ENSOGAG00000014743) #26	HORMAD1 (ENSOGAG00000005640) #27	GOLPH3L (ENSOGAG00000029017)	ENSA (ENSOGAG00000005863)	MCL1 (ENSOGAG00000016421)	ADAMTSL4 (ENSOGAG00000006696)	ECM1 (ENSOGAG00000005365)	TARS2 (ENSOGAG00000005360) #28	RPRD2 (ENSOGAG00000029308)	ENSOGAG00000028162	PRPF3 (ENSOGAG00000005352)
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Lemuriformes_a	ANCESTRAL SPECIES	19	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.c.a	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Coquerels sifaka	MODERN SPECIES	750	ZNF687 (ENSPCOG00000024950) #7	ENSPCOG00000013223	PSMD4 (ENSPCOG00000027248) #8	PIP5K1A (ENSPCOG00000010811)	VPS72 (ENSPCOG00000028469) #9	TMOD4 (ENSPCOG00000019379) #10	SCNM1 (ENSPCOG00000004493) #11	LYSMD1 (ENSPCOG00000015497)	SEMA6C (ENSPCOG00000023729) #13	GABPB2 (ENSPCOG00000024488) #14	CDC42SE1 (ENSPCOG00000015975) #16	C1orf56 (ENSPCOG00000004934) #17	BNIPL (ENSPCOG00000014517) #18	PRUNE1 (ENSPCOG00000028302) #19	ANXA9 (ENSPCOG00000019416) #21	CERS2 (ENSPCOG00000020561) #22	SETDB1 (ENSPCOG00000027869)	CTXND2 (ENSPCOG00000010066)	ARNT (ENSPCOG00000028373) #24	CTSK (ENSPCOG00000022303) #25	CTSS (ENSPCOG00000015772) #26	HORMAD1 (ENSPCOG00000026567) #27	GOLPH3L (ENSPCOG00000019149)	ENSA (ENSPCOG00000015526)	ENSPCOG00000025226	ADAMTSL4 (ENSPCOG00000010721)	ECM1 (ENSPCOG00000027232)	TARS2 (ENSPCOG00000017247) #28	RPRD2 (ENSPCOG00000015902)	ENSPCOG00000022424	PRPF3 (ENSPCOG00000013828)
Greater bamboo lemur	MODERN SPECIES	998							SEMA6C (ENSPSMG00000022272) #13	GABPB2 (ENSPSMG00000022159) #14	MLLT11 (ENSPSMG00000022132) #15	CDC42SE1 (ENSPSMG00000022130) #16	C1orf56 (ENSPSMG00000022123) #17	BNIPL (ENSPSMG00000022120) #18	PRUNE1 (ENSPSMG00000022096) #19	MINDY1 (ENSPSMG00000022064) #20	ANXA9 (ENSPSMG00000022049) #21	CERS2 (ENSPSMG00000022037) #22	SETDB1 (ENSPSMG00000022003)	CTXND2 (ENSPSMG00000021975)	ARNT (ENSPSMG00000021753) #24	CTSK (ENSPSMG00000021532) #25	CTSS (ENSPSMG00000021523) #26	HORMAD1 (ENSPSMG00000021500) #27	ENSPSMG00000021475	GOLPH3L (ENSPSMG00000021465)	ENSA (ENSPSMG00000021455)	ENSPSMG00000021426	ENSPSMG00000021413	ADAMTSL4 (ENSPSMG00000021345)	ECM1 (ENSPSMG00000021284)	TARS2 (ENSPSMG00000021195) #28	RPRD2 (ENSPSMG00000021029)
Mouse lemur	MODERN SPECIES	11	ZNF687 (ENSMICG00000016128) #7	PSMD4 (ENSMICG00000016117) #8	PIP5K1A (ENSMICG00000033339)	VPS72 (ENSMICG00000006827) #9	TMOD4 (ENSMICG00000006822) #10	SCNM1 (ENSMICG00000047233) #11	LYSMD1 (ENSMICG00000026636)	SEMA6C (ENSMICG00000006866) #13	GABPB2 (ENSMICG00000006802) #14	CDC42SE1 (ENSMICG00000045944) #16	C1orf56 (ENSMICG00000000470) #17	BNIPL (ENSMICG00000000460) #18	PRUNE1 (ENSMICG00000000451) #19	MINDY1 (ENSMICG00000000449) #20	ANXA9 (ENSMICG00000000445) #21	CERS2 (ENSMICG00000000441) #22	SETDB1 (ENSMICG00000000425)	CTXND2 (ENSMICG00000044474)	ENSMICG00000034737	ARNT (ENSMICG00000005872) #24	CTSK (ENSMICG00000005853) #25	CTSS (ENSMICG00000032451) #26	ENSMICG00000027297	HORMAD1 (ENSMICG00000036889) #27	GOLPH3L (ENSMICG00000027785)	ENSA (ENSMICG00000004996)	ENSMICG00000029534	MCL1 (ENSMICG00000034250)	ADAMTSL4 (ENSMICG00000008061)	ECM1 (ENSMICG00000044220)	TARS2 (ENSMICG00000008016) #28
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Tarsier	MODERN SPECIES	2292																CERS2 (ENSTSYG00000005355) #22
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a.g #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Hominidae	ANCESTRAL SPECIES	6	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a.g #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b.a	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a.g #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00910000146771	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b.a	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a.g #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Pan	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b.a	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a.g #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Chimpanzee	MODERN SPECIES		VPS72 (ENSPTRG00000001281) #9	TMOD4 (ENSPTRG00000001280) #10	SCNM1 (ENSPTRG00000001279) #11	LYSMD1 (ENSPTRG00000001278)	TNFAIP8L2 (ENSPTRG00000001277) #12	SEMA6C (ENSPTRG00000001276) #13	GABPB2 (ENSPTRG00000001275) #14	ENSPTRG00000049844	ENSPTRG00000050883	CDC42SE1 (ENSPTRG00000023156) #16	C1H1orf56 (ENSPTRG00000001274) #17	BNIPL (ENSPTRG00000001272) #18	PRUNE1 (ENSPTRG00000050821) #19	MINDY1 (ENSPTRG00000001270) #20	ANXA9 (ENSPTRG00000001269) #21	CERS2 (ENSPTRG00000001268) #22	SETDB1 (ENSPTRG00000001267)	CTXND2 (ENSPTRG00000043902)	ENSPTRG00000044588	ARNT (ENSPTRG00000001266) #24	CTSK (ENSPTRG00000001265) #25	CTSS (ENSPTRG00000001264) #26	HORMAD1 (ENSPTRG00000001263) #27	GOLPH3L (ENSPTRG00000001262)	ENSA (ENSPTRG00000001261)	MCL1 (ENSPTRG00000001260)	ENSPTRG00000040851	ADAMTSL4 (ENSPTRG00000001258)	ECM1 (ENSPTRG00000001257)	TARS2 (ENSPTRG00000001256) #28	RPRD2 (ENSPTRG00000001255)
Bonobo	MODERN SPECIES		VPS72 (ENSPPAG00000037577) #9	TMOD4 (ENSPPAG00000031353) #10	SCNM1 (ENSPPAG00000029574) #11	LYSMD1 (ENSPPAG00000036493)	TNFAIP8L2 (ENSPPAG00000021231) #12	SEMA6C (ENSPPAG00000038335) #13	GABPB2 (ENSPPAG00000012295) #14	ENSPPAG00000000610	ENSPPAG00000023077	CDC42SE1 (ENSPPAG00000036728) #16	C1orf56 (ENSPPAG00000031132) #17	ENSPPAG00000033368 #18	PRUNE1 (ENSPPAG00000033014) #19	MINDY1 (ENSPPAG00000038839) #20	ANXA9 (ENSPPAG00000035171) #21	CERS2 (ENSPPAG00000039698) #22	SETDB1 (ENSPPAG00000041015)	CTXND2 (ENSPPAG00000024020)	ENSPPAG00000026470	ARNT (ENSPPAG00000040647) #24	CTSK (ENSPPAG00000041595) #25	CTSS (ENSPPAG00000030281) #26	HORMAD1 (ENSPPAG00000006843) #27	GOLPH3L (ENSPPAG00000017189)	ENSPPAG00000001282	MCL1 (ENSPPAG00000038714)	ENSPPAG00000034501	ADAMTSL4 (ENSPPAG00000042395)	ECM1 (ENSPPAG00000031650)	TARS2 (ENSPPAG00000042011) #28	RPRD2 (ENSPPAG00000028604)
Human	MODERN SPECIES		PIP5K1A (ENSG00000143398)	VPS72 (ENSG00000163159) #9	TMOD4 (ENSG00000163157) #10	LYSMD1 (ENSG00000163155)	SCNM1 (ENSG00000163156) #11	TNFAIP8L2 (ENSG00000163154) #12	SEMA6C (ENSG00000143434) #13	GABPB2 (ENSG00000143458) #14	MLLT11 (ENSG00000213190) #15	CDC42SE1 (ENSG00000197622) #16	C1orf56 (ENSG00000143443) #17	BNIPL (ENSG00000163141) #18	PRUNE1 (ENSG00000143363) #19	MINDY1 (ENSG00000143409) #20	ANXA9 (ENSG00000143412) #21	CERS2 (ENSG00000143418) #22	SETDB1 (ENSG00000143379)	CTXND2 (ENSG00000283324)	ARNT (ENSG00000143437) #24	CTSK (ENSG00000143387) #25	CTSS (ENSG00000163131) #26	HORMAD1 (ENSG00000143452) #27	GOLPH3L (ENSG00000143457)	ENSA (ENSG00000143420)	MCL1 (ENSG00000143384)	ADAMTSL4 (ENSG00000143382)	ECM1 (ENSG00000143369)	TARS2 (ENSG00000143374) #28	RPRD2 (ENSG00000163125)	PRPF3 (ENSG00000117360)	MRPS21 (ENSG00000266472)
Gorilla	MODERN SPECIES		VPS72 (ENSGGOG00000036209) #9	TMOD4 (ENSGGOG00000024182) #10	SCNM1 (ENSGGOG00000003357) #11	LYSMD1 (ENSGGOG00000014046)	TNFAIP8L2 (ENSGGOG00000014042) #12	SEMA6C (ENSGGOG00000022199) #13	GABPB2 (ENSGGOG00000001029) #14	MLLT11 (ENSGGOG00000040228) #15	ENSGGOG00000039380	CDC42SE1 (ENSGGOG00000008215) #16	C1orf56 (ENSGGOG00000023531) #17	BNIPL (ENSGGOG00000008210) #18	ENSGGOG00000039222 #19	MINDY1 (ENSGGOG00000001534) #20	ANXA9 (ENSGGOG00000005582) #21	CERS2 (ENSGGOG00000011486) #22	SETDB1 (ENSGGOG00000016308)	CTXND2 (ENSGGOG00000038429)	ENSGGOG00000023315	ARNT (ENSGGOG00000015383) #24	CTSK (ENSGGOG00000015378) #25	ENSGGOG00000004909 #26	HORMAD1 (ENSGGOG00000004337) #27	GOLPH3L (ENSGGOG00000000869)	ENSGGOG00000023948	MCL1 (ENSGGOG00000016154)	ADAMTSL4 (ENSGGOG00000016142)	ENSGGOG00000042298	ENSGGOG00000041363	ENSGGOG00000006323	TARS2 (ENSGGOG00000006311) #28
Orangutan	MODERN SPECIES		PSMD4 (ENSPPYG00000000871) #8	PIP5K1A (ENSPPYG00000000872)	VPS72 (ENSPPYG00000000873) #9	TMOD4 (ENSPPYG00000034301) #10	ENSPPYG00000000874 #11	LYSMD1 (ENSPPYG00000036209)	SEMA6C (ENSPPYG00000000877) #13	GABPB2 (ENSPPYG00000000878) #14	MLLT11 (ENSPPYG00000000879)	CDC42SE1 (ENSPPYG00000030734) #16	C1orf56 (ENSPPYG00000000881) #17	ENSPPYG00000000882 #18	PRUNE1 (ENSPPYG00000000883) #19	MINDY1 (ENSPPYG00000000884) #20	ANXA9 (ENSPPYG00000000885) #21	CERS2 (ENSPPYG00000000886) #22	SETDB1 (ENSPPYG00000000887)	CTXND2 (ENSPPYG00000031784)	ARNT (ENSPPYG00000000888) #24	CTSK (ENSPPYG00000000889) #25	CTSS (ENSPPYG00000000890) #26	HORMAD1 (ENSPPYG00000000891) #27	GOLPH3L (ENSPPYG00000000892)	ENSPPYG00000000893	MCL1 (ENSPPYG00000000894)	ADAMTSL4 (ENSPPYG00000000896)	ECM1 (ENSPPYG00000000897)	TARS2 (ENSPPYG00000000898) #28	RPRD2 (ENSPPYG00000000899)	PRPF3 (ENSPPYG00000000900)	MRPS21 (ENSPPYG00000032712)
Gibbon	MODERN SPECIES	2	ENSNLEG00000010125 #10	SCNM1 (ENSNLEG00000010123) #11	LYSMD1 (ENSNLEG00000032888)	TNFAIP8L2 (ENSNLEG00000035422) #12	SEMA6C (ENSNLEG00000010093) #13	GABPB2 (ENSNLEG00000033310) #14	MLLT11 (ENSNLEG00000030296) #15	ENSNLEG00000032141	CDC42SE1 (ENSNLEG00000031841) #16	C1orf56 (ENSNLEG00000010073) #17	ENSNLEG00000027334	BNIPL (ENSNLEG00000010065) #18	PRUNE1 (ENSNLEG00000010057) #19	MINDY1 (ENSNLEG00000033005) #20	ANXA9 (ENSNLEG00000010032) #21	CERS2 (ENSNLEG00000010014) #22	SETDB1 (ENSNLEG00000009996)	CTXND2 (ENSNLEG00000035943)	ARNT (ENSNLEG00000009971) #24	CTSK (ENSNLEG00000033510) #25	CTSS (ENSNLEG00000009960) #26	HORMAD1 (ENSNLEG00000009941) #27	GOLPH3L (ENSNLEG00000028540)	ENSNLEG00000009928	MCL1 (ENSNLEG00000009922)	ADAMTSL4 (ENSNLEG00000009896)	ENSNLEG00000033454	ECM1 (ENSNLEG00000009877)	TARS2 (ENSNLEG00000009858) #28	ENSNLEG00000029292	PRPF3 (ENSNLEG00000009841)
Cercopithecidae	ANCESTRAL SPECIES	22	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT00940000155413.l.a.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28
Rhinopithecus	ANCESTRAL SPECIES	23	ENSGT00940000154703.e.b	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.l.a.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a
Golden snub-nosed monkey	MODERN SPECIES	2622	PIP5K1A (ENSRROG00000012959)	VPS72 (ENSRROG00000026948) #9	TMOD4 (ENSRROG00000040162) #10	SCNM1 (ENSRROG00000038049) #11	LYSMD1 (ENSRROG00000042467)	TNFAIP8L2 (ENSRROG00000027193) #12	SEMA6C (ENSRROG00000044266) #13	GABPB2 (ENSRROG00000035884) #14	ENSRROG00000013259	CDC42SE1 (ENSRROG00000045185) #16	C1orf56 (ENSRROG00000027918) #17	BNIPL (ENSRROG00000034530) #18	PRUNE1 (ENSRROG00000037584) #19	MINDY1 (ENSRROG00000037195) #20	ANXA9 (ENSRROG00000032772) #21	CERS2 (ENSRROG00000010279) #22	SETDB1 (ENSRROG00000032628)	CTXND2 (ENSRROG00000017486)	ENSRROG00000015516	ENSRROG00000010877	ARNT (ENSRROG00000032414) #24	CTSK (ENSRROG00000036101) #25	CTSS (ENSRROG00000039722) #26	HORMAD1 (ENSRROG00000007880) #27	GOLPH3L (ENSRROG00000042636)	ENSRROG00000034733	MCL1 (ENSRROG00000033266)	ADAMTSL4 (ENSRROG00000035617)	ENSRROG00000044578	ECM1 (ENSRROG00000030152)	TARS2 (ENSRROG00000030946) #28
Black snub-nosed monkey	MODERN SPECIES	590	PSMD4 (ENSRBIG00000031077) #8	PIP5K1A (ENSRBIG00000040874)	VPS72 (ENSRBIG00000027963) #9	TMOD4 (ENSRBIG00000035077) #10	SCNM1 (ENSRBIG00000020166) #11	LYSMD1 (ENSRBIG00000043593)	TNFAIP8L2 (ENSRBIG00000002148) #12	SEMA6C (ENSRBIG00000041675) #13	GABPB2 (ENSRBIG00000035367) #14	CDC42SE1 (ENSRBIG00000036252) #16	C1orf56 (ENSRBIG00000041763) #17	BNIPL (ENSRBIG00000007306) #18	PRUNE1 (ENSRBIG00000041012) #19	MINDY1 (ENSRBIG00000041946) #20	ANXA9 (ENSRBIG00000006699) #21	CERS2 (ENSRBIG00000029589) #22	SETDB1 (ENSRBIG00000042359)	CTXND2 (ENSRBIG00000017453)	ENSRBIG00000015869	ARNT (ENSRBIG00000043770) #24	CTSK (ENSRBIG00000011955) #25	CTSS (ENSRBIG00000034911) #26	HORMAD1 (ENSRBIG00000031865) #27	GOLPH3L (ENSRBIG00000033265)	ENSRBIG00000027848	MCL1 (ENSRBIG00000031092)	ADAMTSL4 (ENSRBIG00000044718)	ECM1 (ENSRBIG00000029889)	TARS2 (ENSRBIG00000044518) #28	RPRD2 (ENSRBIG00000032833)	PRPF3 (ENSRBIG00000028854)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT00940000155413.l.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.y.b.b
Vervet Monkey	MODERN SPECIES	179											C1orf56 (ENSCSAG00000018010) #17	BNIPL (ENSCSAG00000018015) #18	PRUNE1 (ENSCSAG00000018020) #19	MINDY1 (ENSCSAG00000018023) #20	ANXA9 (ENSCSAG00000018026) #21	CERS2 (ENSCSAG00000018030) #22	SETDB1 (ENSCSAG00000018034)	ARNT (ENSCSAG00000018038) #24	CTSK (ENSCSAG00000018040) #25	CTSS (ENSCSAG00000018046) #26	HORMAD1 (ENSCSAG00000018051) #27	GOLPH3L (ENSCSAG00000018055)	ENSA (ENSCSAG00000018058)	ENSCSAG00000018061	MCL1 (ENSCSAG00000018064)	ADAMTSL4 (ENSCSAG00000018068)	ECM1 (ENSCSAG00000018071)	TARS2 (ENSCSAG00000018075) #28	ENSCSAG00000018079	ENSCSAG00000018084	MRPS21 (ENSCSAG00000018085)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.l.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.y.b.b
Macaca	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.l.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.y.b.b
Pig-tailed macaque	MODERN SPECIES	262	VPS72 (ENSMNEG00000045564) #9	TMOD4 (ENSMNEG00000041160) #10	SCNM1 (ENSMNEG00000026712) #11	LYSMD1 (ENSMNEG00000029644)	TNFAIP8L2 (ENSMNEG00000020572) #12	SEMA6C (ENSMNEG00000035534) #13	GABPB2 (ENSMNEG00000013770) #14	MLLT11 (ENSMNEG00000022771) #15	ENSMNEG00000033578	CDC42SE1 (ENSMNEG00000041697) #16	C1orf56 (ENSMNEG00000037405) #17	BNIPL (ENSMNEG00000037149) #18	PRUNE1 (ENSMNEG00000030962) #19	MINDY1 (ENSMNEG00000041868) #20	ANXA9 (ENSMNEG00000000542) #21	CERS2 (ENSMNEG00000042406) #22	SETDB1 (ENSMNEG00000017223)	ENSMNEG00000005779	ARNT (ENSMNEG00000044100) #24	CTSK (ENSMNEG00000033034) #25	CTSS (ENSMNEG00000034738) #26	HORMAD1 (ENSMNEG00000043307) #27	GOLPH3L (ENSMNEG00000008522)	ENSA (ENSMNEG00000031456)	MCL1 (ENSMNEG00000045448)	ADAMTSL4 (ENSMNEG00000028307)	ECM1 (ENSMNEG00000015328)	TARS2 (ENSMNEG00000042066) #28	RPRD2 (ENSMNEG00000028542)	PRPF3 (ENSMNEG00000038161)	ENSMNEG00000031239
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000154703.e.b	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.l.b	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.y.b.b	ENSGT00390000018360
Rhesus	MODERN SPECIES		PIP5K1A (ENSMMUG00000005228)	VPS72 (ENSMMUG00000007905) #9	TMOD4 (ENSMMUG00000007903) #10	SCNM1 (ENSMMUG00000007900) #11	LYSMD1 (ENSMMUG00000007898)	TNFAIP8L2 (ENSMMUG00000007897) #12	SEMA6C (ENSMMUG00000007643) #13	GABPB2 (ENSMMUG00000008402) #14	MLLT11 (ENSMMUG00000010075)	CDC42SE1 (ENSMMUG00000010074) #16	C1H1orf56 (ENSMMUG00000010072) #17	BNIPL (ENSMMUG00000010071) #18	PRUNE1 (ENSMMUG00000010068) #19	MINDY1 (ENSMMUG00000010067) #20	ANXA9 (ENSMMUG00000023231) #21	CERS2 (ENSMMUG00000023234) #22	SETDB1 (ENSMMUG00000023235)	ARNT (ENSMMUG00000000541) #24	CTSS (ENSMMUG00000010670) #26	HORMAD1 (ENSMMUG00000010669) #27	GOLPH3L (ENSMMUG00000010668)	ENSA (ENSMMUG00000012814)	MCL1 (ENSMMUG00000053525)	ADAMTSL4 (ENSMMUG00000008218)	ECM1 (ENSMMUG00000006257)	TARS2 (ENSMMUG00000006256) #28	RPRD2 (ENSMMUG00000007303)	PRPF3 (ENSMMUG00000016301)	ENSMMUG00000060724	MRPS21 (ENSMMUG00000021391)	ENSMMUG00000049420
Crab-eating macaque	MODERN SPECIES		RIIAD1 (ENSMFAG00000042291)	CELF3 (ENSMFAG00000040182)	SNX27 (ENSMFAG00000030490)	TUFT1 (ENSMFAG00000034076)	ENSMFAG00000003431	POGZ (ENSMFAG00000043596)	ENSMFAG00000054881	PSMB4 (ENSMFAG00000033442)	SELENBP1 (ENSMFAG00000033465)	RFX5 (ENSMFAG00000033452)	PI4KB (ENSMFAG00000004350)	ZNF687 (ENSMFAG00000034438) #7	PSMD4 (ENSMFAG00000000623) #8	PIP5K1A (ENSMFAG00000031399)	ENSMFAG00000055601	CERS2 (ENSMFAG00000038604) #22	SETDB1 (ENSMFAG00000042328)	ARNT (ENSMFAG00000038379) #24	CTSK (ENSMFAG00000000402) #25	CTSS (ENSMFAG00000035464) #26	HORMAD1 (ENSMFAG00000000795) #27	GOLPH3L (ENSMFAG00000042364)	ENSA (ENSMFAG00000001523)	MCL1 (ENSMFAG00000042545)	ADAMTSL4 (ENSMFAG00000002869)	ECM1 (ENSMFAG00000040115)	TARS2 (ENSMFAG00000030387) #28	RPRD2 (ENSMFAG00000002559)	PRPF3 (ENSMFAG00000039791)	MRPS21 (ENSMFAG00000042375)	CIART (ENSMFAG00000042429)
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00910000146771	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.y.b.b
Olive baboon	MODERN SPECIES		ZNF687 (ENSPANG00000003115) #7	PSMD4 (ENSPANG00000010190) #8	PIP5K1A (ENSPANG00000015349)	VPS72 (ENSPANG00000000636) #9	TMOD4 (ENSPANG00000000635) #10	LYSMD1 (ENSPANG00000008738)	SEMA6C (ENSPANG00000021850) #13	GABPB2 (ENSPANG00000015567) #14	MLLT11 (ENSPANG00000035992) #15	CDC42SE1 (ENSPANG00000022420) #16	C1orf56 (ENSPANG00000012292) #17	BNIPL (ENSPANG00000005713) #18	PRUNE1 (ENSPANG00000011008) #19	MINDY1 (ENSPANG00000015350) #20	ANXA9 (ENSPANG00000012518) #21	CERS2 (ENSPANG00000012293) #22	SETDB1 (ENSPANG00000020214)	ARNT (ENSPANG00000016773) #24	CTSK (ENSPANG00000009168) #25	CTSS (ENSPANG00000021581) #26	HORMAD1 (ENSPANG00000009155) #27	GOLPH3L (ENSPANG00000036054)	ENSA (ENSPANG00000021851)	MCL1 (ENSPANG00000016574)	ADAMTSL4 (ENSPANG00000011009)	ECM1 (ENSPANG00000006364)	TARS2 (ENSPANG00000016774) #28	RPRD2 (ENSPANG00000019137)	PRPF3 (ENSPANG00000000499)	MRPS21 (ENSPANG00000030104)	CIART (ENSPANG00000034379)
Cercopithecinae_d	ANCESTRAL SPECIES	29	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00860000134665	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00390000009405.a.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00390000018360
Sooty mangabey	MODERN SPECIES	153	VPS72 (ENSCATG00000000907) #9	TMOD4 (ENSCATG00000032370) #10	SCNM1 (ENSCATG00000042592) #11	LYSMD1 (ENSCATG00000037386)	TNFAIP8L2 (ENSCATG00000016739) #12	SEMA6C (ENSCATG00000042275) #13	GABPB2 (ENSCATG00000042751) #14	ENSCATG00000017037	ENSCATG00000038418	CDC42SE1 (ENSCATG00000032396) #16	C1orf56 (ENSCATG00000029971) #17	BNIPL (ENSCATG00000040526) #18	PRUNE1 (ENSCATG00000044946) #19	MINDY1 (ENSCATG00000038845) #20	ANXA9 (ENSCATG00000034635) #21	CERS2 (ENSCATG00000031279) #22	SETDB1 (ENSCATG00000044888)	ARNT (ENSCATG00000041677) #24	CTSK (ENSCATG00000036086) #25	CTSS (ENSCATG00000036085) #26	HORMAD1 (ENSCATG00000039929) #27	GOLPH3L (ENSCATG00000033915)	ENSCATG00000032600	MCL1 (ENSCATG00000032744)	ADAMTSL4 (ENSCATG00000043576)	ECM1 (ENSCATG00000033093)	TARS2 (ENSCATG00000034784) #28	RPRD2 (ENSCATG00000033842)	PRPF3 (ENSCATG00000041778)	CIART (ENSCATG00000032392)	C1orf54 (ENSCATG00000033751)
Drill	MODERN SPECIES	411	PIP5K1A (ENSMLEG00000032131)	VPS72 (ENSMLEG00000035130) #9	TMOD4 (ENSMLEG00000044243) #10	SCNM1 (ENSMLEG00000018977) #11	LYSMD1 (ENSMLEG00000036832)	TNFAIP8L2 (ENSMLEG00000002703) #12	ENSMLEG00000033840 #13	GABPB2 (ENSMLEG00000043912) #14	ENSMLEG00000027133	CDC42SE1 (ENSMLEG00000014068) #16	C1orf56 (ENSMLEG00000037789) #17	BNIPL (ENSMLEG00000043110) #18	PRUNE1 (ENSMLEG00000039523) #19	MINDY1 (ENSMLEG00000013546) #20	ANXA9 (ENSMLEG00000038293) #21	CERS2 (ENSMLEG00000037916) #22	SETDB1 (ENSMLEG00000033050)	ENSMLEG00000027987	ARNT (ENSMLEG00000043783) #24	CTSK (ENSMLEG00000035690) #25	CTSS (ENSMLEG00000037846) #26	HORMAD1 (ENSMLEG00000023333) #27	GOLPH3L (ENSMLEG00000042824)	ENSA (ENSMLEG00000028446)	MCL1 (ENSMLEG00000026079)	ADAMTSL4 (ENSMLEG00000041962)	ECM1 (ENSMLEG00000023846)	TARS2 (ENSMLEG00000030174) #28	RPRD2 (ENSMLEG00000028436)	PRPF3 (ENSMLEG00000040609)	CIART (ENSMLEG00000009773)
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000154703.e.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b.e	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Mas night monkey	MODERN SPECIES	784	ENSANAG00000037109	VPS72 (ENSANAG00000032435) #9	TMOD4 (ENSANAG00000025034) #10	SCNM1 (ENSANAG00000021348) #11	ENSANAG00000027900	TNFAIP8L2 (ENSANAG00000013726) #12	SEMA6C (ENSANAG00000030841) #13	GABPB2 (ENSANAG00000033560) #14	CDC42SE1 (ENSANAG00000034234) #16	C1orf56 (ENSANAG00000033953) #17	BNIPL (ENSANAG00000034658) #18	ENSANAG00000029347	PRUNE1 (ENSANAG00000023005) #19	MINDY1 (ENSANAG00000035903) #20	ANXA9 (ENSANAG00000037268) #21	CERS2 (ENSANAG00000027061) #22	SETDB1 (ENSANAG00000001819)	CTXND2 (ENSANAG00000007098)	ENSANAG00000035985	ARNT (ENSANAG00000021110) #24	CTSK (ENSANAG00000037073) #25	CTSS (ENSANAG00000027610) #26	HORMAD1 (ENSANAG00000021070) #27	GOLPH3L (ENSANAG00000020389)	ENSANAG00000029931	ENSANAG00000003718	ENSANAG00000021748	ADAMTSL4 (ENSANAG00000019112)	ECM1 (ENSANAG00000031765)	TARS2 (ENSANAG00000019620) #28	RPRD2 (ENSANAG00000019468)
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000154703.e.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b.e	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Marmoset	MODERN SPECIES	9	ENSCJAG00000007344	VPS72 (ENSCJAG00000070474) #9	TMOD4 (ENSCJAG00000007296) #10	SCNM1 (ENSCJAG00000007277) #11	LYSMD1 (ENSCJAG00000045898)	TNFAIP8L2 (ENSCJAG00000046203) #12	SEMA6C (ENSCJAG00000007159) #13	GABPB2 (ENSCJAG00000007146) #14	MLLT11 (ENSCJAG00000043847) #15	CDC42SE1 (ENSCJAG00000041056) #16	C1orf56 (ENSCJAG00000007125) #17	BNIPL (ENSCJAG00000007115) #18	PRUNE1 (ENSCJAG00000007107) #19	MINDY1 (ENSCJAG00000007100) #20	ANXA9 (ENSCJAG00000007078) #21	CERS2 (ENSCJAG00000007043) #22	SETDB1 (ENSCJAG00000006972)	ARNT (ENSCJAG00000006839) #24	CTSK (ENSCJAG00000006804) #25	CTSS (ENSCJAG00000006790) #26	HORMAD1 (ENSCJAG00000006705) #27	GOLPH3L (ENSCJAG00000055606)	ENSA (ENSCJAG00000046173)	ENSCJAG00000080548	ENSCJAG00000038289	ADAMTSL4 (ENSCJAG00000006555)	ECM1 (ENSCJAG00000006499)	TARS2 (ENSCJAG00000006429) #28	MCL1 (ENSCJAG00000006605)	RPRD2 (ENSCJAG00000006424)	PRPF3 (ENSCJAG00000009926)
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00530000064050.bb.a #8	ENSGT00940000154703.e.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413.k.a	ENSGT01090000260003.a.b.b.a.a.a.b.b.e	ENSGT00940000161136	ENSGT00910000147146	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Bolivian squirrel monkey	MODERN SPECIES	194	ENSSBOG00000027593 #8	ENSSBOG00000033201	VPS72 (ENSSBOG00000033206) #9	TMOD4 (ENSSBOG00000030865) #10	SCNM1 (ENSSBOG00000032405) #11	LYSMD1 (ENSSBOG00000000350)	TNFAIP8L2 (ENSSBOG00000004747) #12	SEMA6C (ENSSBOG00000024763) #13	GABPB2 (ENSSBOG00000029601) #14	CDC42SE1 (ENSSBOG00000035657) #16	C1orf56 (ENSSBOG00000025901) #17	BNIPL (ENSSBOG00000029084) #18	PRUNE1 (ENSSBOG00000014294) #19	MINDY1 (ENSSBOG00000035915) #20	ANXA9 (ENSSBOG00000017233) #21	CERS2 (ENSSBOG00000033621) #22	SETDB1 (ENSSBOG00000028608)	CTXND2 (ENSSBOG00000016796)	ARNT (ENSSBOG00000025839) #24	CTSK (ENSSBOG00000028605) #25	CTSS (ENSSBOG00000027502) #26	HORMAD1 (ENSSBOG00000034042) #27	GOLPH3L (ENSSBOG00000035901)	ENSA (ENSSBOG00000030145)	MCL1 (ENSSBOG00000035804)	ADAMTSL4 (ENSSBOG00000028243)	ENSSBOG00000003745	ECM1 (ENSSBOG00000031851)	TARS2 (ENSSBOG00000001108) #28	RPRD2 (ENSSBOG00000020427)	PRPF3 (ENSSBOG00000033104)
Capuchin	MODERN SPECIES	188	ENSCCAG00000037432 #8	ENSCCAG00000028432	VPS72 (ENSCCAG00000035387) #9	TMOD4 (ENSCCAG00000031316) #10	SCNM1 (ENSCCAG00000034389) #11	LYSMD1 (ENSCCAG00000000035)	TNFAIP8L2 (ENSCCAG00000010675) #12	SEMA6C (ENSCCAG00000023670) #13	GABPB2 (ENSCCAG00000035213) #14	CDC42SE1 (ENSCCAG00000037855) #16	C1orf56 (ENSCCAG00000029248) #17	BNIPL (ENSCCAG00000035594) #18	PRUNE1 (ENSCCAG00000032830) #19	MINDY1 (ENSCCAG00000034264) #20	ANXA9 (ENSCCAG00000029485) #21	CERS2 (ENSCCAG00000024890) #22	SETDB1 (ENSCCAG00000024882)	CTXND2 (ENSCCAG00000006838)	ENSCCAG00000025398	ARNT (ENSCCAG00000029182) #24	CTSK (ENSCCAG00000029150) #25	CTSS (ENSCCAG00000021854) #26	HORMAD1 (ENSCCAG00000028128) #27	GOLPH3L (ENSCCAG00000000006)	ENSCCAG00000029199	MCL1 (ENSCCAG00000029442)	ADAMTSL4 (ENSCCAG00000026279)	ENSCCAG00000027383	ECM1 (ENSCCAG00000026093)	TARS2 (ENSCCAG00000034305) #28	RPRD2 (ENSCCAG00000032422)
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Eulipotyphla	ANCESTRAL SPECIES	127													ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471
Common shrew	MODERN SPECIES	3046													CDC42SE1 (ENSSARG00000002846) #16	C1orf56 (ENSSARG00000002823) #17	ENSSARG00000002798 #18	CERS2 (ENSSARG00000002775) #22	ENSSARG00000002693
Hedgehog	MODERN SPECIES	4020																CERS2 (ENSEEUG00000015863) #22	SETDB1 (ENSEEUG00000015825)
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Artiodactyla	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Suina	ANCESTRAL SPECIES	8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Chacoan peccary	MODERN SPECIES	29	PIP5K1A (ENSCWAG00000006665)	VPS72 (ENSCWAG00000006762) #9	TMOD4 (ENSCWAG00000006804) #10	SCNM1 (ENSCWAG00000006857) #11	LYSMD1 (ENSCWAG00000006908)	TNFAIP8L2 (ENSCWAG00000006959) #12	SEMA6C (ENSCWAG00000006983) #13	GABPB2 (ENSCWAG00000007044) #14	MLLT11 (ENSCWAG00000007068) #15	CDC42SE1 (ENSCWAG00000007079) #16	C1orf56 (ENSCWAG00000007095) #17	BNIPL (ENSCWAG00000007128) #18	PRUNE1 (ENSCWAG00000007173) #19	MINDY1 (ENSCWAG00000007209) #20	ANXA9 (ENSCWAG00000007232) #21	CERS2 (ENSCWAG00000007281) #22	SETDB1 (ENSCWAG00000007313)	CTXND2 (ENSCWAG00000007433)	ARNT (ENSCWAG00000007457) #24	CTSK (ENSCWAG00000007556) #25	CTSS (ENSCWAG00000007587) #26	HORMAD1 (ENSCWAG00000007637) #27	GOLPH3L (ENSCWAG00000008042)	ENSCWAG00000008100	MCL1 (ENSCWAG00000008263)	ADAMTSL4 (ENSCWAG00000008396)	ECM1 (ENSCWAG00000008573)	TARS2 (ENSCWAG00000008672) #28	RPRD2 (ENSCWAG00000008913)	PRPF3 (ENSCWAG00000008995)	MRPS21 (ENSCWAG00000009071)
Pig	MODERN SPECIES	12	PIP5K1A (ENSSSCG00000030547)	VPS72 (ENSSSCG00000031869) #9	TMOD4 (ENSSSCG00000006631) #10	SCNM1 (ENSSSCG00000006632) #11	LYSMD1 (ENSSSCG00000020965)	TNFAIP8L2 (ENSSSCG00000006634) #12	SEMA6C (ENSSSCG00000006635) #13	GABPB2 (ENSSSCG00000006636) #14	CDC42SE1 (ENSSSCG00000031881) #16	MLLT11 (ENSSSCG00000030278) #15	C1orf56 (ENSSSCG00000006639) #17	BNIPL (ENSSSCG00000006640) #18	PRUNE1 (ENSSSCG00000006641) #19	MINDY1 (ENSSSCG00000006642) #20	ANXA9 (ENSSSCG00000006643) #21	CERS2 (ENSSSCG00000006644) #22	SETDB1 (ENSSSCG00000006645)	CTXND2 (ENSSSCG00000057128)	ARNT (ENSSSCG00000006646) #24	CTSK (ENSSSCG00000052889) #25	CTSS (ENSSSCG00000006648) #26	HORMAD1 (ENSSSCG00000006649) #27	GOLPH3L (ENSSSCG00000038558)	ENSSSCG00000049503	ENSA (ENSSSCG00000006653)	MCL1 (ENSSSCG00000039314)	ADAMTSL4 (ENSSSCG00000006651)	ECM1 (ENSSSCG00000029230)	TARS2 (ENSSSCG00000026395) #28	RPRD2 (ENSSSCG00000030291)	PRPF3 (ENSSSCG00000030119)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Cetacea	ANCESTRAL SPECIES		ENSGT00530000064050.i #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112.o.a #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.m	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112.o.a #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262.e.b #19	ENSGT00450000040262.f #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.m	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00530000064050.i #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112.o.a #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262.f #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.m	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00530000064050.i #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112.o.a #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262.f #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.m	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Monodontidae	ANCESTRAL SPECIES		ENSGT00530000064050.i #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112.o.a #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262.f #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00950000183109.c.a.a.m.b.d	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.m	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Narwhal	MODERN SPECIES	304	ENSMMNG00015003620 #8	PIP5K1A (ENSMMNG00015003697)	VPS72 (ENSMMNG00015003778) #9	TMOD4 (ENSMMNG00015003815) #10	SCNM1 (ENSMMNG00015003851) #11	LYSMD1 (ENSMMNG00015003872)	TNFAIP8L2 (ENSMMNG00015003890) #12	SEMA6C (ENSMMNG00015003950) #13	GABPB2 (ENSMMNG00015004107) #14	MLLT11 (ENSMMNG00015004162) #15	ENSMMNG00015004170 #16	C1orf56 (ENSMMNG00015004180) #17	BNIPL (ENSMMNG00015004189) #18	PRUNE1 (ENSMMNG00015004204) #19	MINDY1 (ENSMMNG00015004226) #20	CERS2 (ENSMMNG00015004250) #22	SETDB1 (ENSMMNG00015004269)	CTXND2 (ENSMMNG00015004301)	ENSMMNG00015004305	ARNT (ENSMMNG00015004336) #24	CTSK (ENSMMNG00015004429) #25	CTSS (ENSMMNG00015004454) #26	HORMAD1 (ENSMMNG00015004509) #27	GOLPH3L (ENSMMNG00015004555)	ENSA (ENSMMNG00015004565)	MCL1 (ENSMMNG00015004577)	ADAMTSL4 (ENSMMNG00015004588)	ECM1 (ENSMMNG00015004604)	TARS2 (ENSMMNG00015004626) #28	RPRD2 (ENSMMNG00015004667)	PRPF3 (ENSMMNG00015004709)
Beluga whale	MODERN SPECIES	99	PSMD4 (ENSDLEG00000011513) #8	PIP5K1A (ENSDLEG00000011526)	VPS72 (ENSDLEG00000011554) #9	TMOD4 (ENSDLEG00000011565) #10	SCNM1 (ENSDLEG00000011581) #11	LYSMD1 (ENSDLEG00000011595)	TNFAIP8L2 (ENSDLEG00000011599) #12	SEMA6C (ENSDLEG00000008123) #13	GABPB2 (ENSDLEG00000008303) #14	MLLT11 (ENSDLEG00000008383) #15	CDC42SE1 (ENSDLEG00000008403) #16	C1orf56 (ENSDLEG00000008441) #17	BNIPL (ENSDLEG00000008485) #18	PRUNE1 (ENSDLEG00000008668) #19	MINDY1 (ENSDLEG00000008706) #20	CERS2 (ENSDLEG00000008736) #22	SETDB1 (ENSDLEG00000008865)	ENSDLEG00000008940	ARNT (ENSDLEG00000008978) #24	CTSK (ENSDLEG00000009129) #25	CTSS (ENSDLEG00000009183) #26	GOLPH3L (ENSDLEG00000009214)	ENSA (ENSDLEG00000009232)	MCL1 (ENSDLEG00000009251)	ADAMTSL4 (ENSDLEG00000009315)	ECM1 (ENSDLEG00000009658) #28	RPRD2 (ENSDLEG00000009754)	PRPF3 (ENSDLEG00000009787)	MRPS21 (ENSDLEG00000009817)	CIART (ENSDLEG00000009825)	ENSDLEG00000009839
Vaquita	MODERN SPECIES		ENSPSNG00000003494 #8	PIP5K1A (ENSPSNG00000003403)	VPS72 (ENSPSNG00000003334) #9	TMOD4 (ENSPSNG00000003298) #10	SCNM1 (ENSPSNG00000003271) #11	LYSMD1 (ENSPSNG00000003233)	TNFAIP8L2 (ENSPSNG00000003213) #12	SEMA6C (ENSPSNG00000003085) #13	GABPB2 (ENSPSNG00000002981) #14	MLLT11 (ENSPSNG00000002930) #15	CDC42SE1 (ENSPSNG00000002899) #16	C1orf56 (ENSPSNG00000002883) #17	BNIPL (ENSPSNG00000002869) #18	PRUNE1 (ENSPSNG00000002841) #19	MINDY1 (ENSPSNG00000002812) #20	CERS2 (ENSPSNG00000002789) #22	SETDB1 (ENSPSNG00000002722)	CTXND2 (ENSPSNG00000002678)	ENSPSNG00000002663	ARNT (ENSPSNG00000002599) #24	CTSK (ENSPSNG00000002537) #25	ENSPSNG00000002497	CTSS (ENSPSNG00000002456) #26	ENSPSNG00000002431	HORMAD1 (ENSPSNG00000002291) #27	GOLPH3L (ENSPSNG00000002225)	ENSPSNG00000002192	MCL1 (ENSPSNG00000002164)	ADAMTSL4 (ENSPSNG00000002117)	ECM1 (ENSPSNG00000002059)	TARS2 (ENSPSNG00000001970) #28
Dolphin	MODERN SPECIES	769	PI4KB (ENSTTRG00000007021)	ZNF687 (ENSTTRG00000007020) #7	PSMD4 (ENSTTRG00000007019) #8	PIP5K1A (ENSTTRG00000007016)	VPS72 (ENSTTRG00000007015) #9	TMOD4 (ENSTTRG00000007013) #10	SCNM1 (ENSTTRG00000007011) #11	TNFAIP8L2 (ENSTTRG00000007009) #12	SEMA6C (ENSTTRG00000007007) #13	GABPB2 (ENSTTRG00000007003) #14	MLLT11 (ENSTTRG00000007002) #15	CDC42SE1 (ENSTTRG00000007000) #16	BNIPL (ENSTTRG00000006994) #18	PRUNE1 (ENSTTRG00000006991) #19	MINDY1 (ENSTTRG00000006986) #20	CERS2 (ENSTTRG00000006978) #22	SETDB1 (ENSTTRG00000006966)
Sperm whale	MODERN SPECIES	446														ENSPCTG00005020751 #19	MINDY1 (ENSPCTG00005020762) #20	CERS2 (ENSPCTG00005020777) #22
Blue whale	MODERN SPECIES		ENSBMSG00010016666 #8	PIP5K1A (ENSBMSG00010016429)	VPS72 (ENSBMSG00010016387) #9	TMOD4 (ENSBMSG00010016336) #10	SCNM1 (ENSBMSG00010016290) #11	LYSMD1 (ENSBMSG00010016236)	TNFAIP8L2 (ENSBMSG00010016214) #12	SEMA6C (ENSBMSG00010015964) #13	GABPB2 (ENSBMSG00010015897) #14	MLLT11 (ENSBMSG00010015877) #15	ENSBMSG00010015864 #16	C1orf56 (ENSBMSG00010015857) #17	BNIPL (ENSBMSG00010015820) #18	PRUNE1 (ENSBMSG00010015772) #19	MINDY1 (ENSBMSG00010015736) #20	CERS2 (ENSBMSG00010015712) #22	SETDB1 (ENSBMSG00010015648)	CTXND2 (ENSBMSG00010015619)	ARNT (ENSBMSG00010015560) #24	CTSK (ENSBMSG00010015531) #25	ENSBMSG00010015501	CTSS (ENSBMSG00010015415) #26	HORMAD1 (ENSBMSG00010015193) #27	GOLPH3L (ENSBMSG00010015147)	ENSBMSG00010015076	ENSBMSG00010015010	ADAMTSL4 (ENSBMSG00010014975)	ENSBMSG00010014950	ECM1 (ENSBMSG00010014903)	TARS2 (ENSBMSG00010014680) #28	RPRD2 (ENSBMSG00010014508)
Pecora	ANCESTRAL SPECIES	2	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Yarkand deer	MODERN SPECIES	12	PIP5K1A (ENSCHYG00000007550)	ENSCHYG00000007817 #9	TMOD4 (ENSCHYG00000007877) #10	SCNM1 (ENSCHYG00000007917) #11	LYSMD1 (ENSCHYG00000007945)	TNFAIP8L2 (ENSCHYG00000007962) #12	SEMA6C (ENSCHYG00000008002) #13	GABPB2 (ENSCHYG00000008209) #14	ENSCHYG00000008272 #15	CDC42SE1 (ENSCHYG00000008283) #16	C1orf56 (ENSCHYG00000008299) #17	BNIPL (ENSCHYG00000008308) #18	PRUNE1 (ENSCHYG00000008341) #19	MINDY1 (ENSCHYG00000008523) #20	ANXA9 (ENSCHYG00000008588) #21	CERS2 (ENSCHYG00000008620) #22	SETDB1 (ENSCHYG00000008840)	CTXND2 (ENSCHYG00000009233)	ARNT (ENSCHYG00000009373) #24	CTSK (ENSCHYG00000009848) #25	CTSS (ENSCHYG00000009944) #26	HORMAD1 (ENSCHYG00000010140) #27	GOLPH3L (ENSCHYG00000010384)	ENSCHYG00000010464	MCL1 (ENSCHYG00000010763)	ADAMTSL4 (ENSCHYG00000010890)	ECM1 (ENSCHYG00000011225)	TARS2 (ENSCHYG00000011458) #28	RPRD2 (ENSCHYG00000012167)	PRPF3 (ENSCHYG00000012362)	ENSCHYG00000012484
Percora_a	ANCESTRAL SPECIES	1	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Bovidae	ANCESTRAL SPECIES	1	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Caprinae	ANCESTRAL SPECIES	2	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00910000146771	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000003316.d.g.a.b.a.a	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020013691	VPS72 (ENSOARG00020013630) #9	TMOD4 (ENSOARG00020013556) #10	SCNM1 (ENSOARG00020013488) #11	LYSMD1 (ENSOARG00020013436)	TNFAIP8L2 (ENSOARG00020013414) #12	SEMA6C (ENSOARG00020012397) #13	GABPB2 (ENSOARG00020012123) #14	MLLT11 (ENSOARG00020012089) #15	CDC42SE1 (ENSOARG00020012045) #16	C1orf56 (ENSOARG00020011990) #17	BNIPL (ENSOARG00020011956) #18	PRUNE1 (ENSOARG00020011679) #19	MINDY1 (ENSOARG00020011596) #20	ANXA9 (ENSOARG00020011475) #21	CERS2 (ENSOARG00020011401) #22	SETDB1 (ENSOARG00020011148)	CTXND2 (ENSOARG00020011105)	ENSOARG00020011070	ARNT (ENSOARG00020009727) #24	CTSK (ENSOARG00020009669) #25	ENSOARG00020009638	CTSS (ENSOARG00020009546) #26	HORMAD1 (ENSOARG00020008996) #27	ENSOARG00020008922	GOLPH3L (ENSOARG00020008878)	ENSA (ENSOARG00020008758)	MCL1 (ENSOARG00020008725)	ADAMTSL4 (ENSOARG00020008616)	ECM1 (ENSOARG00020008539)	TARS2 (ENSOARG00020008324) #28
Goat	MODERN SPECIES	22	ENSCHIG00000002422	VPS72 (ENSCHIG00000014800) #9	TMOD4 (ENSCHIG00000023166) #10	SCNM1 (ENSCHIG00000014264) #11	LYSMD1 (ENSCHIG00000025538)	TNFAIP8L2 (ENSCHIG00000008444) #12	SEMA6C (ENSCHIG00000027158) #13	GABPB2 (ENSCHIG00000017762) #14	MLLT11 (ENSCHIG00000001570) #15	ENSCHIG00000010765	CDC42SE1 (ENSCHIG00000009064) #16	BNIPL (ENSCHIG00000025222) #18	PRUNE1 (ENSCHIG00000011605) #19	MINDY1 (ENSCHIG00000018101) #20	ANXA9 (ENSCHIG00000024087) #21	CERS2 (ENSCHIG00000023499) #22	SETDB1 (ENSCHIG00000010698)	ARNT (ENSCHIG00000012451) #24	CTSK (ENSCHIG00000011574) #25	ENSCHIG00000012927	CTSS (ENSCHIG00000022768) #26	HORMAD1 (ENSCHIG00000010871) #27	ENSCHIG00000006760	ENSCHIG00000017930	ENSA (ENSCHIG00000011483)	MCL1 (ENSCHIG00000027012)	ADAMTSL4 (ENSCHIG00000024595)	ENSCHIG00000011166	ENSCHIG00000025006	ECM1 (ENSCHIG00000010881)	TARS2 (ENSCHIG00000018559) #28
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Bos	ANCESTRAL SPECIES		ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT01100000263480.a.a.b.a.b.b.b.b.b
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.o	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT01100000263480.a.a.b.a.b.b.b.b.b
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005028021	VPS72 (ENSBIXG00005027956) #9	TMOD4 (ENSBIXG00005027928) #10	SCNM1 (ENSBIXG00005027892) #11	LYSMD1 (ENSBIXG00005027861)	TNFAIP8L2 (ENSBIXG00005027841) #12	SEMA6C (ENSBIXG00005027801) #13	GABPB2 (ENSBIXG00005027729) #14	MLLT11 (ENSBIXG00005004758) #15	CDC42SE1 (ENSBIXG00005027674) #16	C1orf56 (ENSBIXG00005027664) #17	BNIPL (ENSBIXG00005027654) #18	PRUNE1 (ENSBIXG00005027606) #19	MINDY1 (ENSBIXG00005027538) #20	ANXA9 (ENSBIXG00005007589) #21	CERS2 (ENSBIXG00005027450) #22	SETDB1 (ENSBIXG00005027385)	CTXND2 (ENSBIXG00005027316)	ARNT (ENSBIXG00005006942) #24	CTSK (ENSBIXG00005027189) #25	ENSBIXG00005027168	HORMAD1 (ENSBIXG00005027115) #27	GOLPH3L (ENSBIXG00005004612)	ENSA (ENSBIXG00005026915)	ENSBIXG00005026789	ADAMTSL4 (ENSBIXG00005026752)	TARS2 (ENSBIXG00005007645) #28	RPRD2 (ENSBIXG00005004524)	ENSBIXG00005026407	PRPF3 (ENSBIXG00005026388)	MRPS21 (ENSBIXG00005004483)
Cow	MODERN SPECIES	22	PSMD4 (ENSBTAG00000006101) #8	PIP5K1A (ENSBTAG00000006099)	VPS72 (ENSBTAG00000018074) #9	TMOD4 (ENSBTAG00000018071) #10	SCNM1 (ENSBTAG00000018070) #11	LYSMD1 (ENSBTAG00000020395)	TNFAIP8L2 (ENSBTAG00000020394) #12	SEMA6C (ENSBTAG00000007281) #13	GABPB2 (ENSBTAG00000015371) #14	MLLT11 (ENSBTAG00000015369) #15	C3H1orf56 (ENSBTAG00000015349) #17	BNIPL (ENSBTAG00000015345) #18	PRUNE1 (ENSBTAG00000015336) #19	MINDY1 (ENSBTAG00000015329) #20	ANXA9 (ENSBTAG00000015304) #21	CERS2 (ENSBTAG00000000099) #22	SETDB1 (ENSBTAG00000000098)	ARNT (ENSBTAG00000021037) #24	CTSK (ENSBTAG00000021035) #25	ENSBTAG00000050340	CTSS (ENSBTAG00000017135) #26	HORMAD1 (ENSBTAG00000002724) #27	GOLPH3L (ENSBTAG00000020357)	ENSA (ENSBTAG00000007123)	MCL1 (ENSBTAG00000015154)	ADAMTSL4 (ENSBTAG00000003604)	ECM1 (ENSBTAG00000003806)	TARS2 (ENSBTAG00000003799) #28	RPRD2 (ENSBTAG00000014984)	PRPF3 (ENSBTAG00000013946)	MRPS21 (ENSBTAG00000024378)
Bos_a	ANCESTRAL SPECIES	47	ENSGT00940000153169.A.b.b.a.a.a.a	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000154555.a.a.b	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT01100000263480.a.a.b.a.b.b.b.b.b
Domestic yak	MODERN SPECIES	22	ENSBGRG00000001794	VPS72 (ENSBGRG00000001785) #9	TMOD4 (ENSBGRG00000001770) #10	SCNM1 (ENSBGRG00000001758) #11	LYSMD1 (ENSBGRG00000001747)	TNFAIP8L2 (ENSBGRG00000001735) #12	SEMA6C (ENSBGRG00000001699) #13	GABPB2 (ENSBGRG00000001610) #14	MLLT11 (ENSBGRG00000001584) #15	CDC42SE1 (ENSBGRG00000001575) #16	C1orf56 (ENSBGRG00000001556) #17	BNIPL (ENSBGRG00000001530) #18	PRUNE1 (ENSBGRG00000001499) #19	MINDY1 (ENSBGRG00000001466) #20	ANXA9 (ENSBGRG00000001440) #21	CERS2 (ENSBGRG00000001419) #22	SETDB1 (ENSBGRG00000001377)	CTXND2 (ENSBGRG00000001358)	ARNT (ENSBGRG00000001283) #24	CTSK (ENSBGRG00000001240) #25	ENSBGRG00000001228	ENSBGRG00000001219	HORMAD1 (ENSBGRG00000001109) #27	ENSBGRG00000001073	ENSA (ENSBGRG00000001008)	MCL1 (ENSBGRG00000000962)	ADAMTSL4 (ENSBGRG00000000934)	ECM1 (ENSBGRG00000000897)	TARS2 (ENSBGRG00000000557) #28	ENSBGRG00000000495	RPRD2 (ENSBGRG00000000422)
Wild yak	MODERN SPECIES	688	ENSBMUG00000024232	VPS72 (ENSBMUG00000024221) #9	TMOD4 (ENSBMUG00000024204) #10	SCNM1 (ENSBMUG00000024189) #11	LYSMD1 (ENSBMUG00000024179)	TNFAIP8L2 (ENSBMUG00000024178) #12	SEMA6C (ENSBMUG00000024160) #13	GABPB2 (ENSBMUG00000024085) #14	MLLT11 (ENSBMUG00000024057) #15	CDC42SE1 (ENSBMUG00000024051) #16	C1orf56 (ENSBMUG00000024042) #17	BNIPL (ENSBMUG00000024035) #18	PRUNE1 (ENSBMUG00000024019) #19	MINDY1 (ENSBMUG00000024003) #20	ANXA9 (ENSBMUG00000023991) #21	CERS2 (ENSBMUG00000023975) #22	SETDB1 (ENSBMUG00000023958)	CTXND2 (ENSBMUG00000023928)	ARNT (ENSBMUG00000023892) #24	CTSK (ENSBMUG00000023829) #25	ENSBMUG00000023823	CTSS (ENSBMUG00000023817) #26	HORMAD1 (ENSBMUG00000023788) #27	GOLPH3L (ENSBMUG00000023736)	ENSA (ENSBMUG00000023727)	MCL1 (ENSBMUG00000023701)	ADAMTSL4 (ENSBMUG00000023675)	ECM1 (ENSBMUG00000023627)	TARS2 (ENSBMUG00000023540) #28	RPRD2 (ENSBMUG00000023488)	PRPF3 (ENSBMUG00000023465)
American bison	MODERN SPECIES	3032										CDC42SE1 (ENSBBBG00000024557) #16	C1orf56 (ENSBBBG00000006397) #17	BNIPL (ENSBBBG00000024535) #18	PRUNE1 (ENSBBBG00000000262) #19	MINDY1 (ENSBBBG00000024479) #20	ANXA9 (ENSBBBG00000024438) #21	CERS2 (ENSBBBG00000006357) #22	SETDB1 (ENSBBBG00000006339)	CTXND2 (ENSBBBG00000006318)	ARNT (ENSBBBG00000024242) #24	CTSK (ENSBBBG00000006256) #25	ENSBBBG00000006254	CTSS (ENSBBBG00000024064) #26	HORMAD1 (ENSBBBG00000024026) #27	ENSBBBG00000023935	ENSA (ENSBBBG00000023921)	MCL1 (ENSBBBG00000023859)	ADAMTSL4 (ENSBBBG00000008423)	ECM1 (ENSBBBG00000023801)	TARS2 (ENSBBBG00000023752) #28	RPRD2 (ENSBBBG00000023635)	PRPF3 (ENSBBBG00000023595)
Siberian musk deer	MODERN SPECIES	247	ENSMMSG00000018491	VPS72 (ENSMMSG00000018503) #9	TMOD4 (ENSMMSG00000018543) #10	SCNM1 (ENSMMSG00000018590) #11	LYSMD1 (ENSMMSG00000018627)	TNFAIP8L2 (ENSMMSG00000018650) #12	SEMA6C (ENSMMSG00000018695) #13	GABPB2 (ENSMMSG00000018775) #14	MLLT11 (ENSMMSG00000018852) #15	ENSMMSG00000018858 #16	C1orf56 (ENSMMSG00000018885) #17	BNIPL (ENSMMSG00000018916) #18	PRUNE1 (ENSMMSG00000018956) #19	MINDY1 (ENSMMSG00000019051) #20	ANXA9 (ENSMMSG00000019107) #21	CERS2 (ENSMMSG00000019147) #22	SETDB1 (ENSMMSG00000019191)	CTXND2 (ENSMMSG00000019290)	ARNT (ENSMMSG00000019310) #24	CTSK (ENSMMSG00000019381) #25	ENSMMSG00000019418	CTSS (ENSMMSG00000019442) #26	HORMAD1 (ENSMMSG00000019531) #27	ENSMMSG00000019604	ENSMMSG00000019621	ENSA (ENSMMSG00000019666)	MCL1 (ENSMMSG00000019746)	ADAMTSL4 (ENSMMSG00000019809)	ECM1 (ENSMMSG00000019915)	TARS2 (ENSMMSG00000019987) #28	RPRD2 (ENSMMSG00000020110)
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Arabian camel	MODERN SPECIES	13	PIP5K1A (ENSCDRG00005009542)	VPS72 (ENSCDRG00005009442) #9	TMOD4 (ENSCDRG00005009355) #10	SCNM1 (ENSCDRG00005009273) #11	LYSMD1 (ENSCDRG00005009227)	TNFAIP8L2 (ENSCDRG00005009207) #12	SEMA6C (ENSCDRG00005009095) #13	GABPB2 (ENSCDRG00005008942) #14	MLLT11 (ENSCDRG00005008910) #15	CDC42SE1 (ENSCDRG00005018416) #16	C1orf56 (ENSCDRG00005018387) #17	BNIPL (ENSCDRG00005018369) #18	PRUNE1 (ENSCDRG00005018303) #19	MINDY1 (ENSCDRG00005018219) #20	ANXA9 (ENSCDRG00005018156) #21	CERS2 (ENSCDRG00005018124) #22	SETDB1 (ENSCDRG00005018003)	ARNT (ENSCDRG00005017808) #24	CTSK (ENSCDRG00005017757) #25	CTSS (ENSCDRG00005017707) #26	HORMAD1 (ENSCDRG00005017527) #27	GOLPH3L (ENSCDRG00005017458)	ENSA (ENSCDRG00005017421)	MCL1 (ENSCDRG00005017360)	ADAMTSL4 (ENSCDRG00005017304)	ECM1 (ENSCDRG00005017209)	TARS2 (ENSCDRG00005017096) #28	RPRD2 (ENSCDRG00005016821)	PRPF3 (ENSCDRG00005016744)	ENSCDRG00005016696	CIART (ENSCDRG00005016658)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Ursidae	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Ursus	ANCESTRAL SPECIES	18	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00950000186073	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
American black bear	MODERN SPECIES	3555																CERS2 (ENSUAMG00000026723) #22	SETDB1 (ENSUAMG00000026724)	ENSUAMG00000026726	ENSUAMG00000026727 #24	ENSUAMG00000026728 #24
Polar bear	MODERN SPECIES	193	PSMD4 (ENSUMAG00000002533) #8	PIP5K1A (ENSUMAG00000002546)	VPS72 (ENSUMAG00000002554) #9	TMOD4 (ENSUMAG00000002565) #10	SCNM1 (ENSUMAG00000002656) #11	LYSMD1 (ENSUMAG00000002659)	SEMA6C (ENSUMAG00000002709) #13	GABPB2 (ENSUMAG00000003028) #14	MLLT11 (ENSUMAG00000003030) #15	CDC42SE1 (ENSUMAG00000003032) #16	C1orf56 (ENSUMAG00000003044) #17	BNIPL (ENSUMAG00000003048) #18	PRUNE1 (ENSUMAG00000003066) #19	MINDY1 (ENSUMAG00000003075) #20	ANXA9 (ENSUMAG00000003084) #21	CERS2 (ENSUMAG00000003094) #22	SETDB1 (ENSUMAG00000003141)	ARNT (ENSUMAG00000003392) #24	CTSK (ENSUMAG00000003426) #25	ENSUMAG00000003430	CTSS (ENSUMAG00000003442) #26	HORMAD1 (ENSUMAG00000003454) #27	GOLPH3L (ENSUMAG00000003469)	ENSA (ENSUMAG00000003476)	ADAMTSL4 (ENSUMAG00000003512)	ECM1 (ENSUMAG00000003701)	TARS2 (ENSUMAG00000003705) #28	RPRD2 (ENSUMAG00000003712)	PRPF3 (ENSUMAG00000003720)	MRPS21 (ENSUMAG00000003735)	CIART (ENSUMAG00000003740)
Giant Panda	MODERN SPECIES	11	PIP5K1A (ENSAMEG00000000750)	VPS72 (ENSAMEG00000000824) #9	TMOD4 (ENSAMEG00000000834) #10	SCNM1 (ENSAMEG00000000911) #11	LYSMD1 (ENSAMEG00000000925)	TNFAIP8L2 (ENSAMEG00000019127) #12	SEMA6C (ENSAMEG00000000929) #13	GABPB2 (ENSAMEG00000000961) #14	MLLT11 (ENSAMEG00000019143) #15	CDC42SE1 (ENSAMEG00000000978) #16	C1orf56 (ENSAMEG00000024447) #17	BNIPL (ENSAMEG00000000980) #18	PRUNE1 (ENSAMEG00000001056) #19	MINDY1 (ENSAMEG00000001070) #20	ANXA9 (ENSAMEG00000001101) #21	CERS2 (ENSAMEG00000001115) #22	SETDB1 (ENSAMEG00000001160)	ENSAMEG00000011643	ARNT (ENSAMEG00000001200) #24	ENSAMEG00000001264 #26	HORMAD1 (ENSAMEG00000001321) #27	GOLPH3L (ENSAMEG00000030641)	ENSA (ENSAMEG00000001375)	MCL1 (ENSAMEG00000001399)	ADAMTSL4 (ENSAMEG00000001424)	ECM1 (ENSAMEG00000001502)	TARS2 (ENSAMEG00000001547) #28	RPRD2 (ENSAMEG00000001598)	PRPF3 (ENSAMEG00000001630)	MRPS21 (ENSAMEG00000001703)	CIART (ENSAMEG00000001706)
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
American mink	MODERN SPECIES	316	ENSNVIG00000015356 #8	PIP5K1A (ENSNVIG00000015442)	VPS72 (ENSNVIG00000015557) #9	TMOD4 (ENSNVIG00000015581) #10	SCNM1 (ENSNVIG00000015600) #11	LYSM1 (ENSNVIG00000015619)	TNFAIP8L2 (ENSNVIG00000015633) #12	SEMA6C (ENSNVIG00000015653) #13	GABPB2 (ENSNVIG00000015834) #14	CDC42SE1 (ENSNVIG00000015858) #16	C1orf56 (ENSNVIG00000015864) #17	BNIPL (ENSNVIG00000015873) #18	PRUNE1 (ENSNVIG00000015904) #19	MINDY1 (ENSNVIG00000015928) #20	ANXA9 (ENSNVIG00000016007) #21	CERS2 (ENSNVIG00000016039) #22	SETDB1 (ENSNVIG00000016086)	CTXND2 (ENSNVIG00000016170)	ENSNVIG00000016187	ARNT (ENSNVIG00000016210) #24	CATK (ENSNVIG00000016339) #25	CTSS (ENSNVIG00000016354) #26	HORMAD1 (ENSNVIG00000016390) #27	GLP3L (ENSNVIG00000016426)	ENSA (ENSNVIG00000016441)	MCL1 (ENSNVIG00000016500)	ADAMTSL4 (ENSNVIG00000016514)	ECM1 (ENSNVIG00000016576)	TARS2 (ENSNVIG00000016668) #28	RPRD2 (ENSNVIG00000016878)	PRPF3 (ENSNVIG00000016938)
Ferret	MODERN SPECIES	398	PSMD4 (ENSMPUG00000003810) #8	PIP5K1A (ENSMPUG00000003887)	VPS72 (ENSMPUG00000004027) #9	TMOD4 (ENSMPUG00000004039) #10	SCNM1 (ENSMPUG00000004051) #11	LYSMD1 (ENSMPUG00000004055)	TNFAIP8L2 (ENSMPUG00000004060) #12	SEMA6C (ENSMPUG00000004065) #13	GABPB2 (ENSMPUG00000004074) #14	MLLT11 (ENSMPUG00000018421) #15	C1orf56 (ENSMPUG00000004134) #17	BNIPL (ENSMPUG00000004137) #18	PRUNE1 (ENSMPUG00000004205) #19	MINDY1 (ENSMPUG00000004209) #20	ANXA9 (ENSMPUG00000004217) #21	CERS2 (ENSMPUG00000004292) #22	SETDB1 (ENSMPUG00000004298)	ARNT (ENSMPUG00000004365) #24	CTSK (ENSMPUG00000004373) #25	ENSMPUG00000004471	CTSS (ENSMPUG00000004552) #26	HORMAD1 (ENSMPUG00000004562) #27	GOLPH3L (ENSMPUG00000004608)	ENSA (ENSMPUG00000004647)	MCL1 (ENSMPUG00000004683)	ADAMTSL4 (ENSMPUG00000004691)	ECM1 (ENSMPUG00000004712)	TARS2 (ENSMPUG00000004795) #28	RPRD2 (ENSMPUG00000005032)	PRPF3 (ENSMPUG00000005080)	MRPS21 (ENSMPUG00000005221)
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.k
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.k
Dog	MODERN SPECIES	8	PSMD4 (ENSCAFG00845022451) #8	PIP5K1A (ENSCAFG00845022223)	VPS72 (ENSCAFG00845022136) #9	TMOD4 (ENSCAFG00845022073) #10	SCNM1 (ENSCAFG00845022000) #11	LYSMD1 (ENSCAFG00845021963)	TNFAIP8L2 (ENSCAFG00845021939) #12	SEMA6C (ENSCAFG00845021515) #13	GABPB2 (ENSCAFG00845021379) #14	MLLT11 (ENSCAFG00845021250) #15	C1orf56 (ENSCAFG00845021195) #17	BNIPL (ENSCAFG00845021092) #18	PRUNE1 (ENSCAFG00845020879) #19	MINDY1 (ENSCAFG00845020685) #20	ANXA9 (ENSCAFG00845020549) #21	CERS2 (ENSCAFG00845020459) #22	SETDB1 (ENSCAFG00845020216)	CTXND2 (ENSCAFG00845020148)	ARNT (ENSCAFG00845019671) #24	CTSK (ENSCAFG00845019461) #25	CTSS (ENSCAFG00845019241) #26	HORMAD1 (ENSCAFG00845018896) #27	GOLPH3L (ENSCAFG00845018671)	ENSA (ENSCAFG00845018577)	MCL1 (ENSCAFG00845018496)	ADAMTSL4 (ENSCAFG00845018385)	ECM1 (ENSCAFG00845018089)	TARS2 (ENSCAFG00845017490) #28	RPRD2 (ENSCAFG00845017196)	PRPF3 (ENSCAFG00845017034)	MRPS21 (ENSCAFG00845016904)
Dingo	MODERN SPECIES	223	PIP5K1A (ENSCAFG00020012928)	ENSCAFG00020013463	TMOD4 (ENSCAFG00020013465) #10	SCNM1 (ENSCAFG00020013477) #11	LYSMD1 (ENSCAFG00020013482)	TNFAIP8L2 (ENSCAFG00020013486) #12	SEMA6C (ENSCAFG00020013490) #13	GABPB2 (ENSCAFG00020013493) #14	MLLT11 (ENSCAFG00020013511) #15	CDC42SE1 (ENSCAFG00020013513) #16	C1orf56 (ENSCAFG00020013517) #17	BNIPL (ENSCAFG00020013521) #18	PRUNE1 (ENSCAFG00020013525) #19	MINDY1 (ENSCAFG00020013527) #20	ANXA9 (ENSCAFG00020013531) #21	CERS2 (ENSCAFG00020013567) #22	SETDB1 (ENSCAFG00020013596)	ARNT (ENSCAFG00020014304) #24	CTSK (ENSCAFG00020019521) #25	CTSS (ENSCAFG00020019528) #26	HORMAD1 (ENSCAFG00020019532) #27	GOLPH3L (ENSCAFG00020019538)	ENSA (ENSCAFG00020019539)	MCL1 (ENSCAFG00020019541)	ADAMTSL4 (ENSCAFG00020019552)	ECM1 (ENSCAFG00020019611)	TARS2 (ENSCAFG00020019615) #28	RPRD2 (ENSCAFG00020019619)	PRPF3 (ENSCAFG00020019653)	MRPS21 (ENSCAFG00020019663)	CIART (ENSCAFG00020019665)
Red fox	MODERN SPECIES	176	PIP5K1A (ENSVVUG00000012763)	VPS72 (ENSVVUG00000012757) #9	TMOD4 (ENSVVUG00000012692) #10	SCNM1 (ENSVVUG00000012685) #11	LYSMD1 (ENSVVUG00000012681)	TNFAIP8L2 (ENSVVUG00000012677) #12	SEMA6C (ENSVVUG00000011791) #13	GABPB2 (ENSVVUG00000011753) #14	MLLT11 (ENSVVUG00000011750) #15	CDC42SE1 (ENSVVUG00000011739) #16	C1orf56 (ENSVVUG00000011731) #17	BNIPL (ENSVVUG00000011719) #18	PRUNE1 (ENSVVUG00000011711) #19	MINDY1 (ENSVVUG00000011699) #20	ANXA9 (ENSVVUG00000011665) #21	CERS2 (ENSVVUG00000011653) #22	SETDB1 (ENSVVUG00000011637)	ENSVVUG00000011618	ARNT (ENSVVUG00000011582) #24	CTSK (ENSVVUG00000011566) #25	CTSS (ENSVVUG00000011558) #26	ENSVVUG00000011548	ENSA (ENSVVUG00000011538)	MCL1 (ENSVVUG00000011532)	ADAMTSL4 (ENSVVUG00000011516)	ENSVVUG00000011504	ECM1 (ENSVVUG00000011492)	TARS2 (ENSVVUG00000009226) #28	RPRD2 (ENSVVUG00000009075)	PRPF3 (ENSVVUG00000007933)	MRPS21 (ENSVVUG00000007865)
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009588.fb.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Panthera	ANCESTRAL SPECIES	40	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009588.fb.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
Tiger	MODERN SPECIES	275	PIP5K1A (ENSPTIG00000015750)	VPS72 (ENSPTIG00000013626) #9	TMOD4 (ENSPTIG00000013183) #10	SCNM1 (ENSPTIG00000012793) #11	LYSMD1 (ENSPTIG00000011723)	TNFAIP8L2 (ENSPTIG00000005950) #12	ENSPTIG00000009931 #13	GABPB2 (ENSPTIG00000009109) #14	MLLT11 (ENSPTIG00000005928) #15	CDC42SE1 (ENSPTIG00000008491) #16	C1orf56 (ENSPTIG00000008272) #17	BNIPL (ENSPTIG00000007131) #18	PRUNE1 (ENSPTIG00000003242) #19	MINDY1 (ENSPTIG00000000898) #20	ANXA9 (ENSPTIG00000021585) #21	CERS2 (ENSPTIG00000018998) #22	SETDB1 (ENSPTIG00000014233)	CTXND2 (ENSPTIG00000005780)	ENSPTIG00000012578	ARNT (ENSPTIG00000006152) #24	CTSK (ENSPTIG00000004636) #25	CTSS (ENSPTIG00000001310) #26	HORMAD1 (ENSPTIG00000019960) #27	GOLPH3L (ENSPTIG00000019004)	ENSA (ENSPTIG00000016622)	MCL1 (ENSPTIG00000016268)	ADAMTSL4 (ENSPTIG00000015181)	ECM1 (ENSPTIG00000012717)	TARS2 (ENSPTIG00000008079) #28	RPRD2 (ENSPTIG00000006304)	PRPF3 (ENSPTIG00000005516)
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00390000009588.fb.b	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497
leopard	MODERN SPECIES	149	PIP5K1A (ENSPPRG00000006756)	VPS72 (ENSPPRG00000008110) #9	TMOD4 (ENSPPRG00000008141) #10	SCNM1 (ENSPPRG00000008819) #11	LYSMD1 (ENSPPRG00000009376)	TNFAIP8L2 (ENSPPRG00000015393) #12	SEMA6C (ENSPPRG00000016004) #13	GABPB2 (ENSPPRG00000021737) #14	MLLT11 (ENSPPRG00000015706) #15	CDC42SE1 (ENSPPRG00000000753) #16	C1orf56 (ENSPPRG00000000789) #17	BNIPL (ENSPPRG00000001137) #18	PRUNE1 (ENSPPRG00000002301) #19	MINDY1 (ENSPPRG00000002925) #20	ANXA9 (ENSPPRG00000003017) #21	CERS2 (ENSPPRG00000003137) #22	SETDB1 (ENSPPRG00000005462)	CTXND2 (ENSPPRG00000015884)	ENSPPRG00000006841	ARNT (ENSPPRG00000007894) #24	CTSK (ENSPPRG00000008091) #25	CTSS (ENSPPRG00000008620) #26	HORMAD1 (ENSPPRG00000010018) #27	GOLPH3L (ENSPPRG00000010135)	ENSPPRG00000011393	MCL1 (ENSPPRG00000011968)	ADAMTSL4 (ENSPPRG00000012710)	ECM1 (ENSPPRG00000013966)	TARS2 (ENSPPRG00000019975) #28	RPRD2 (ENSPPRG00000000487)	ENSPPRG00000000561
lion	MODERN SPECIES	8	PIP5K1A (ENSPLOG00000021268)	VPS72 (ENSPLOG00000021188) #9	TMOD4 (ENSPLOG00000021143) #10	SCNM1 (ENSPLOG00000021105) #11	LYSMD1 (ENSPLOG00000021058)	TNFAIP8L2 (ENSPLOG00000021032) #12	SEMA6C (ENSPLOG00000020778) #13	GABPB2 (ENSPLOG00000020686) #14	MLLT11 (ENSPLOG00000020660) #15	CDC42SE1 (ENSPLOG00000020633) #16	C1orf56 (ENSPLOG00000020617) #17	BNIPL (ENSPLOG00000020559) #18	PRUNE1 (ENSPLOG00000020473) #19	MINDY1 (ENSPLOG00000020401) #20	ANXA9 (ENSPLOG00000020367) #21	CERS2 (ENSPLOG00000020309) #22	SETDB1 (ENSPLOG00000020237)	CTXND2 (ENSPLOG00000020213)	ENSPLOG00000020188	ARNT (ENSPLOG00000020141) #24	CTSK (ENSPLOG00000020110) #25	HORMAD1 (ENSPLOG00000019828) #27	GOLPH3L (ENSPLOG00000019714)	ENSPLOG00000019678	MCL1 (ENSPLOG00000019623)	ADAMTSL4 (ENSPLOG00000019514)	ECM1 (ENSPLOG00000019469)	TARS2 (ENSPLOG00000019042) #28	RPRD2 (ENSPLOG00000018951)	PRPF3 (ENSPLOG00000018919)	ENSPLOG00000018890
Cat	MODERN SPECIES	239	VPS72 (ENSFCAG00000005562) #9	TMOD4 (ENSFCAG00000005561) #10	SCNM1 (ENSFCAG00000005560) #11	LYSMD1 (ENSFCAG00000036601)	TNFAIP8L2 (ENSFCAG00000005558) #12	SEMA6C (ENSFCAG00000005557) #13	GABPB2 (ENSFCAG00000033249) #14	MLLT11 (ENSFCAG00000027874) #15	CDC42SE1 (ENSFCAG00000052064) #16	C1orf56 (ENSFCAG00000041587) #17	BNIPL (ENSFCAG00000032352) #18	PRUNE1 (ENSFCAG00000044569) #19	MINDY1 (ENSFCAG00000009660) #20	ENSFCAG00000052357	ANXA9 (ENSFCAG00000009658) #21	CERS2 (ENSFCAG00000009657) #22	SETDB1 (ENSFCAG00000009655)	ENSFCAG00000035512	ARNT (ENSFCAG00000003644) #24	CTSK (ENSFCAG00000003643) #25	CTSS (ENSFCAG00000003642) #26	HORMAD1 (ENSFCAG00000025264) #27	GOLPH3L (ENSFCAG00000035181)	ENSA (ENSFCAG00000024290)	ADAMTSL4 (ENSFCAG00000000754)	ECM1 (ENSFCAG00000027224)	TARS2 (ENSFCAG00000001702) #28	MCL1 (ENSFCAG00000030278)	RPRD2 (ENSFCAG00000030083)	PRPF3 (ENSFCAG00000013940)	ENSFCAG00000034082
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Equus	ANCESTRAL SPECIES	3	ENSGT00390000017503.e #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00860000134665	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Horse	MODERN SPECIES	26	PSMD4 (ENSECAG00000028544) #8	ENSECAG00000048200	PIP5K1A (ENSECAG00000008201)	VPS72 (ENSECAG00000017754) #9	SCNM1 (ENSECAG00000023965) #11	TMOD4 (ENSECAG00000019026) #10	TNFAIP8L2 (ENSECAG00000007696) #12	SEMA6C (ENSECAG00000000588) #13	GABPB2 (ENSECAG00000014497) #14	MLLT11 (ENSECAG00000021503) #15	CDC42SE1 (ENSECAG00000052501) #16	C5H1orf56 (ENSECAG00000022044) #17	PRUNE1 (ENSECAG00000000743) #19	ANXA9 (ENSECAG00000014801) #21	MINDY1 (ENSECAG00000009096) #20	CERS2 (ENSECAG00000018141) #22	SETDB1 (ENSECAG00000023954)	ARNT (ENSECAG00000009602) #24	CTSK (ENSECAG00000019087) #25	CTSS (ENSECAG00000022438) #26	HORMAD1 (ENSECAG00000011731) #27	GOLPH3L (ENSECAG00000016587)	ENSA (ENSECAG00000017165)	MCL1 (ENSECAG00000018823)	ADAMTSL4 (ENSECAG00000019154)	ECM1 (ENSECAG00000008545)	TARS2 (ENSECAG00000014276) #28	RPRD2 (ENSECAG00000018617)	PRPF3 (ENSECAG00000019840)	CIART (ENSECAG00000010349)	CA14 (ENSECAG00000002916)
Donkey	MODERN SPECIES	17	PIP5K1A (ENSEASG00005002129)	ENSEASG00005002121 #9	ENSEASG00005002113 #11	TMOD4 (ENSEASG00005002119) #10	LYSMD1 (ENSEASG00005034347)	TNFAIP8L2 (ENSEASG00005034798) #12	SEMA6C (ENSEASG00005002102) #13	GABPB2 (ENSEASG00005002094) #14	ENSEASG00005033916	ENSEASG00005027259 #16	ENSEASG00005002085 #17	BNIPL (ENSEASG00005002080) #18	PRUNE1 (ENSEASG00005002076) #19	MINDY1 (ENSEASG00005002074) #20	ANXA9 (ENSEASG00005002066) #21	CERS2 (ENSEASG00005002064) #22	SETDB1 (ENSEASG00005002061)	CTXND2 (ENSEASG00005023903)	ARNT (ENSEASG00005002052) #24	CTSK (ENSEASG00005002046) #25	CTSS (ENSEASG00005002042) #26	HORMAD1 (ENSEASG00005002037) #27	GOLPH3L (ENSEASG00005034481)	ENSA (ENSEASG00005025935)	MCL1 (ENSEASG00005002018)	ADAMTSL4 (ENSEASG00005001774)	ECM1 (ENSEASG00005001606)	TARS2 (ENSEASG00005001587) #28	RPRD2 (ENSEASG00005001574)	PRPF3 (ENSEASG00005001566)	MRPS21 (ENSEASG00005001557)
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000164740	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038
Microbat	MODERN SPECIES	1088	PSMD4 (ENSMLUG00000015186) #8	PIP5K1A (ENSMLUG00000015171)	VPS72 (ENSMLUG00000015162) #9	TMOD4 (ENSMLUG00000015148) #10	SCNM1 (ENSMLUG00000015145) #11	LYSMD1 (ENSMLUG00000023399)	ENSMLUG00000015143 #12	SEMA6C (ENSMLUG00000002978) #13	GABPB2 (ENSMLUG00000002973) #14	MLLT11 (ENSMLUG00000027273) #15	C1orf56 (ENSMLUG00000023169) #17	BNIPL (ENSMLUG00000010588) #18	PRUNE1 (ENSMLUG00000010581) #19	ENSMLUG00000010567 #20	ANXA9 (ENSMLUG00000010544) #21	CERS2 (ENSMLUG00000010519) #22	SETDB1 (ENSMLUG00000010486)	ARNT (ENSMLUG00000003502) #24	CTSK (ENSMLUG00000003495) #25	CTSS (ENSMLUG00000003491) #26	HORMAD1 (ENSMLUG00000003485) #27	GOLPH3L (ENSMLUG00000003484)	ENSA (ENSMLUG00000027950)	ENSMLUG00000029657	ADAMTSL4 (ENSMLUG00000003472)	ECM1 (ENSMLUG00000013133)	TARS2 (ENSMLUG00000013123) #28	RPRD2 (ENSMLUG00000013112)	MRPS21 (ENSMLUG00000025875)	CIART (ENSMLUG00000013709)	C1orf54 (ENSMLUG00000013704)
Greater horseshoe bat	MODERN SPECIES	14	PIP5K1A (ENSRFEG00010021499)	VPS72 (ENSRFEG00010021466) #9	TMOD4 (ENSRFEG00010021448) #10	SCNM1 (ENSRFEG00010021441) #11	LYSMD1 (ENSRFEG00010021428)	TNFAIP8L2 (ENSRFEG00010021420) #12	SEMA6C (ENSRFEG00010021390) #13	GABPB2 (ENSRFEG00010021352) #14	MLLT11 (ENSRFEG00010021338) #15	ENSRFEG00010021328 #16	C1orf56 (ENSRFEG00010021323) #17	BNIPL (ENSRFEG00010021309) #18	PRUNE1 (ENSRFEG00010021296) #19	MINDY1 (ENSRFEG00010021279) #20	ANXA9 (ENSRFEG00010021262) #21	CERS2 (ENSRFEG00010021239) #22	SETDB1 (ENSRFEG00010021209)	CTXND2 (ENSRFEG00010021199)	ARNT (ENSRFEG00010021097) #24	ENSRFEG00010021080	CTSK (ENSRFEG00010021054) #25	CTSS (ENSRFEG00010021017) #26	HORMAD1 (ENSRFEG00010020903) #27	GOLPH3L (ENSRFEG00010020873)	ENSRFEG00010020865	ENSA (ENSRFEG00010020814)	MCL1 (ENSRFEG00010020768)	ADAMTSL4 (ENSRFEG00010020724)	ECM1 (ENSRFEG00010020676)	TARS2 (ENSRFEG00010020572) #28	RPRD2 (ENSRFEG00010020482)
Atlantogenata	ANCESTRAL SPECIES	66	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Xenarthra	ANCESTRAL SPECIES	253			ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471
Armadillo	MODERN SPECIES	1323			VPS72 (ENSDNOG00000004332) #9	TMOD4 (ENSDNOG00000004327) #10	SCNM1 (ENSDNOG00000004323) #11	LYSMD1 (ENSDNOG00000037068)	TNFAIP8L2 (ENSDNOG00000004318) #12	SEMA6C (ENSDNOG00000043434) #13	ENSDNOG00000004312 #14	ENSDNOG00000049501 #15	CDC42SE1 (ENSDNOG00000043995) #16	BNIPL (ENSDNOG00000016365) #18	PRUNE1 (ENSDNOG00000016363) #19	MINDY1 (ENSDNOG00000001917) #20	ANXA9 (ENSDNOG00000006510) #21	CERS2 (ENSDNOG00000007761) #22	SETDB1 (ENSDNOG00000007754)
Sloth	MODERN SPECIES	3549																ENSCHOG00000004042 #22	SETDB1 (ENSCHOG00000004013)
Afrotheria	ANCESTRAL SPECIES	76	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Afrotheria_a	ANCESTRAL SPECIES	75	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Elephant	MODERN SPECIES	26	PSMD4 (ENSLAFG00000013429) #8	PIP5K1A (ENSLAFG00000013425)	VPS72 (ENSLAFG00000013421) #9	TMOD4 (ENSLAFG00000013414) #10	SCNM1 (ENSLAFG00000013409) #11	LYSMD1 (ENSLAFG00000013404)	SEMA6C (ENSLAFG00000010983) #13	GABPB2 (ENSLAFG00000004020) #14	MLLT11 (ENSLAFG00000020588) #15	CDC42SE1 (ENSLAFG00000004019) #16	C1orf56 (ENSLAFG00000004017) #17	BNIPL (ENSLAFG00000029342) #18	PRUNE1 (ENSLAFG00000004016) #19	MINDY1 (ENSLAFG00000004012) #20	ANXA9 (ENSLAFG00000004011) #21	CERS2 (ENSLAFG00000028936) #22	SETDB1 (ENSLAFG00000004006)	ARNT (ENSLAFG00000011282) #24	CTSK (ENSLAFG00000011279) #25	CTSS (ENSLAFG00000011276) #26	HORMAD1 (ENSLAFG00000011265) #27	GOLPH3L (ENSLAFG00000031294)	ENSA (ENSLAFG00000011261)	MCL1 (ENSLAFG00000011260)	ADAMTSL4 (ENSLAFG00000030426)	ECM1 (ENSLAFG00000028827)	TARS2 (ENSLAFG00000004979) #28	RPRD2 (ENSLAFG00000004975)	PRPF3 (ENSLAFG00000004713)	MRPS21 (ENSLAFG00000030348)	CIART (ENSLAFG00000002729)
Hyrax	MODERN SPECIES	3217	ENSPCAG00000003299 #8	PIP5K1A (ENSPCAG00000003223)	VPS72 (ENSPCAG00000003194) #9	TMOD4 (ENSPCAG00000003101) #10	SCNM1 (ENSPCAG00000003064) #11	LYSMD1 (ENSPCAG00000003030)	TNFAIP8L2 (ENSPCAG00000003022) #12	SEMA6C (ENSPCAG00000002952) #13	GABPB2 (ENSPCAG00000002909) #14	MLLT11 (ENSPCAG00000002899) #15	CDC42SE1 (ENSPCAG00000002881) #16	BNIPL (ENSPCAG00000002807) #18	PRUNE1 (ENSPCAG00000002774) #19	MINDY1 (ENSPCAG00000002750) #20	ANXA9 (ENSPCAG00000002679) #21	CERS2 (ENSPCAG00000002617) #22	SETDB1 (ENSPCAG00000002527)
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Opossum	MODERN SPECIES	1	VPS72 (ENSMODG00000018848) #9	TMOD4 (ENSMODG00000018845) #10	SCNM1 (ENSMODG00000042115) #11	LYSMD1 (ENSMODG00000018841)	TNFAIP8L2 (ENSMODG00000023206) #12	ENSMODG00000048842	SEMA6C (ENSMODG00000018839) #13	GABPB2 (ENSMODG00000018836) #14	MLLT11 (ENSMODG00000023207) #15	CDC42SE1 (ENSMODG00000018833) #16	ENSMODG00000018832 #17	BNIPL (ENSMODG00000046354) #18	PRUNE1 (ENSMODG00000045279) #19	MINDY1 (ENSMODG00000018827) #20	ANXA9 (ENSMODG00000018826) #21	CERS2 (ENSMODG00000018825) #22	SETDB1 (ENSMODG00000018821)	ARNT (ENSMODG00000018814) #24	CTSK (ENSMODG00000018811) #25	CTSS (ENSMODG00000018809) #26	HORMAD1 (ENSMODG00000018807) #27	GOLPH3L (ENSMODG00000051501)	ENSA (ENSMODG00000018804)	ADAMTSL4 (ENSMODG00000018799)	MCL1 (ENSMODG00000018801)	ENSMODG00000018796	TARS2 (ENSMODG00000018792) #28	RPRD2 (ENSMODG00000018786)	PRPF3 (ENSMODG00000018774)	MRPS21 (ENSMODG00000018783)	ENSMODG00000018781
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Diprotodontia	ANCESTRAL SPECIES	5	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038	ENSGT00390000018360
Diprotodontia_a	ANCESTRAL SPECIES	6	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00390000014288 #17	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000161600 #28	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00500000045038.gb	ENSGT00390000018360
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1007	ENSVURG00010018831 #8	ENSVURG00010018840	ENSVURG00010018853 #9	ENSVURG00010018858 #10	ENSVURG00010018868 #11	ENSVURG00010018892	ENSVURG00010018879 #13	ENSVURG00010018895 #12	ENSVURG00010018897 #14	ENSVURG00010000108 #16	ENSVURG00010000117 #17	ENSVURG00010000128 #18	ENSVURG00010000146 #19	ENSVURG00010000167 #20	ENSVURG00010000188 #21	ENSVURG00010000206 #22	ENSVURG00010000234	ENSVURG00010000270 #24	ENSVURG00010000306 #25	ENSVURG00010000321 #26	ENSVURG00010000357 #27	ENSVURG00010000422	ENSVURG00010000444	ENSVURG00010000461	ENSVURG00010000490	ENSVURG00010000529	ENSVURG00010000553 #28	ENSVURG00010000591	ENSVURG00010000618	ENSVURG00010000650	ENSVURG00010000676
Common wonbat	MODERN SPECIES	1007	ENSVURG00010014485	ENSVURG00010014525 #9	ENSVURG00010014536 #10	ENSVURG00010014549 #11	ENSVURG00010014557	ENSVURG00010014564 #12	ENSVURG00010014579 #13	ENSVURG00010014626 #14	MLLT11 (ENSVURG00010014655) #15	ENSVURG00010014667 #16	ENSVURG00010014712 #17	ENSVURG00010014689 #18	ENSVURG00010014734 #19	ENSVURG00010014761 #20	ENSVURG00010014785 #21	ENSVURG00010014801 #22	ENSVURG00010014816	ENSVURG00010014843 #24	ENSVURG00010014884 #25	ENSVURG00010014896 #26	ENSVURG00010014924 #27	ENSVURG00010015007	ENSVURG00010015024	ENSVURG00010015036	ENSVURG00010015042	ENSVURG00010015082	ENSVURG00010015119 #28	ENSVURG00010015284	ENSVURG00010015568	ENSVURG00010015584	ENSVURG00010015603
koala	MODERN SPECIES	4	PIP5K1A (ENSPCIG00000021133)	VPS72 (ENSPCIG00000021130) #9	TMOD4 (ENSPCIG00000021079) #10	SCNM1 (ENSPCIG00000021078) #11	LYSMD1 (ENSPCIG00000021077)	TNFAIP8L2 (ENSPCIG00000021076) #12	SEMA6C (ENSPCIG00000021074) #13	GABPB2 (ENSPCIG00000021073) #14	ENSPCIG00000031827 #15	ENSPCIG00000037396 #16	ENSPCIG00000033805 #17	BNIPL (ENSPCIG00000007757) #18	PRUNE1 (ENSPCIG00000007751) #19	MINDY1 (ENSPCIG00000008930) #20	ANXA9 (ENSPCIG00000008929) #21	CERS2 (ENSPCIG00000008928) #22	ENSPCIG00000034396	ARNT (ENSPCIG00000008925) #24	ENSPCIG00000008916 #25	ENSPCIG00000008899	ENSA (ENSPCIG00000023585)	MCL1 (ENSPCIG00000008897)	ADAMTSL4 (ENSPCIG00000008894)	ENSPCIG00000008887	TARS2 (ENSPCIG00000008884) #28	RPRD2 (ENSPCIG00000008798)	PRPF3 (ENSPCIG00000008795)	ENSPCIG00000008793	CIART (ENSPCIG00000035308)	APH1A (ENSPCIG00000008786)	CA14 (ENSPCIG00000008783) #30
Wallaby	MODERN SPECIES	5065														MINDY1 (ENSMEUG00000006614) #20	ANXA9 (ENSMEUG00000006597) #21	CERS2 (ENSMEUG00000006577) #22	ENSMEUG00000006544
Tasmanian devil	MODERN SPECIES	3	PSMD4 (ENSSHAG00000029197) #8	PIP5K1A (ENSSHAG00000013894)	VPS72 (ENSSHAG00000013847) #9	TMOD4 (ENSSHAG00000013797) #10	SCNM1 (ENSSHAG00000013796) #11	ENSSHAG00000022218 #12	SEMA6C (ENSSHAG00000013618) #13	ENSSHAG00000025507	MLLT11 (ENSSHAG00000025455) #15	GABPB2 (ENSSHAG00000030596) #14	ENSSHAG00000026643 #18	ENSSHAG00000029597 #19	ENSSHAG00000028099 #17	ANXA9 (ENSSHAG00000012884) #21	MINDY1 (ENSSHAG00000013033) #20	CERS2 (ENSSHAG00000012811) #22	SETDB1 (ENSSHAG00000012701)	ARNT (ENSSHAG00000025438) #24	CTSS (ENSSHAG00000011950) #26	HORMAD1 (ENSSHAG00000011613) #27	ENSA (ENSSHAG00000029217)	MCL1 (ENSSHAG00000021636)	ADAMTSL4 (ENSSHAG00000010707)	ECM1 (ENSSHAG00000010367)	ENSSHAG00000009548	TARS2 (ENSSHAG00000010286) #28	RPRD2 (ENSSHAG00000009969)	MRPS21 (ENSSHAG00000029824)	CIART (ENSSHAG00000021296)	APH1A (ENSSHAG00000022849)	CA14 (ENSSHAG00000009010) #30
Sauria	ANCESTRAL SPECIES	28	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497
Archelosauria	ANCESTRAL SPECIES	27	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497
Archosauria	ANCESTRAL SPECIES	36	ENSGT00990000206813	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893 #30
Aves	ANCESTRAL SPECIES	36	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00990000206813	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893 #30
Neognathae	ANCESTRAL SPECIES	36	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00990000206813	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26
Galloanserae	ANCESTRAL SPECIES	36	ENSGT00550000074892	ENSGT00940000156524 #7	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000005125	ENSGT00570000079224	ENSGT00390000005131	ENSGT00390000002390.b	ENSGT00940000154566	ENSGT00410000026290.i	ENSGT00940000162656	ENSGT00940000155399	ENSGT00940000161509	ENSGT00940000157244
Anatidae	ANCESTRAL SPECIES	76	ENSGT01050000244970.a	ENSGT00550000074892	ENSGT00940000156524 #7	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000005125	ENSGT00570000079224	ENSGT00390000005131	ENSGT00390000002390.b
Pink-footed goose	MODERN SPECIES	365	RFX5 (ENSABRG00000008833)	PI4KB (ENSABRG00000008818)	ZNF687 (ENSABRG00000008791) #7	ENSABRG00000008778	PSMD4 (ENSABRG00000008769) #8	PIP5K1A (ENSABRG00000008738)	VPS72 (ENSABRG00000008724) #9	TMOD4 (ENSABRG00000008719) #10	SCNM1 (ENSABRG00000008557) #11	SEMA6C (ENSABRG00000008508) #13	GABPB2 (ENSABRG00000008489) #14	MLLT11 (ENSABRG00000008478) #15	CDC42SE1 (ENSABRG00000008466) #16	PRUNE1 (ENSABRG00000008460) #19	MINDY1 (ENSABRG00000008453) #20	CERS2 (ENSABRG00000008443) #22	ENSABRG00000008437	SETDB1 (ENSABRG00000008426)	ARNT (ENSABRG00000006945) #24	CTSK (ENSABRG00000006853) #25	CTSS (ENSABRG00000006843) #26	SSR2 (ENSABRG00000006819)	CCT3 (ENSABRG00000006805)	GLMP (ENSABRG00000006796)	TMEM79 (ENSABRG00000006790)
Duck	MODERN SPECIES	17	ENSAPLG00000029925	ENSAPLG00000025785	ENSAPLG00000009473	TUFT1 (ENSAPLG00000009480)	PSMB4 (ENSAPLG00000009850)	POGZ (ENSAPLG00000009926)	ENSAPLG00000010148	ENSAPLG00000002903	RFX5 (ENSAPLG00000027459)	PI4KB (ENSAPLG00000002437)	ZNF687 (ENSAPLG00000002073) #7	ENSAPLG00000024016 #13	GABPB2 (ENSAPLG00000014691) #14	CDC42SE1 (ENSAPLG00000014686) #16	PRUNE1 (ENSAPLG00000014429) #19	CERS2 (ENSAPLG00000014026) #22	ENSAPLG00000014024	SETDB1 (ENSAPLG00000013908)	ARNT (ENSAPLG00000013397) #24	CTSK (ENSAPLG00000012768) #25	CTSS (ENSAPLG00000012624) #26	SSR2 (ENSAPLG00000012456)	CCT3 (ENSAPLG00000009108)	TMEM79 (ENSAPLG00000028836)	PIP5K1A (ENSAPLG00000015266)	IGSF9 (ENSAPLG00000027030)	DUSP23 (ENSAPLG00000005043)	ENSAPLG00000017213	ENSAPLG00000001080	ACKR1 (ENSAPLG00000025585)	CADM3 (ENSAPLG00000017996)
Phasianidae	ANCESTRAL SPECIES	34	ENSGT00550000074892	ENSGT00940000156524 #7	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000005125	ENSGT01050000244808.E
Phasianidae_b	ANCESTRAL SPECIES	31	ENSGT01050000244970.a	ENSGT00550000074892	ENSGT00940000156524 #7	ENSGT00530000064050 #8	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000005125	ENSGT01050000244808.E	ENSGT00390000003894	ENSGT00390000009529	ENSGT00940000160966	ENSGT00940000164842	ENSGT00940000158549.v	ENSGT00390000008744	ENSGT00940000155545.a	ENSGT00390000008196
Chicken	MODERN SPECIES	17	RFX5 (ENSGALG00010027397)	PI4KB (ENSGALG00010028604)	ZNF687 (ENSGALG00010028602) #7	PSMD4 (ENSGALG00010028600) #8	PIP5K1A (ENSGALG00010028871)	VPS72 (ENSGALG00010028599) #9	TMOD4 (ENSGALG00010028598) #10	SCNM1 (ENSGALG00010028595) #11	LYSMD1 (ENSGALG00010028594)	SEMA6C (ENSGALG00010028592) #13	GABPB2 (ENSGALG00010028591) #14	MLLT11 (ENSGALG00010028782) #15	ENSGALG00010028590 #16	MINDY1 (ENSGALG00010028585) #20	PRUNE1 (ENSGALG00010028580) #19	CERS2 (ENSGALG00010028577) #22	SETDB1 (ENSGALG00010028575)	ENSGALG00010028571	ARNT (ENSGALG00010028764) #24	CTSK (ENSGALG00010028763) #25	CTSS (ENSGALG00010028761) #26	SSR2 (ENSGALG00010028760)	ENSGALG00010027582	FCER1G (ENSGALG00010027575)	NDUFS2 (ENSGALG00010027570)	ADAMTS4 (ENSGALG00010027561)	ENSGALG00010027554	B4GALT3 (ENSGALG00010027547)	PPOX (ENSGALG00010027540)	USP21 (ENSGALG00010027536)	UFC1 (ENSGALG00010027531)
Japanese quail	MODERN SPECIES	17	PI4KB (ENSCJPG00005015279)	ZNF687 (ENSCJPG00005015276) #7	ENSCJPG00005015273	PSMD4 (ENSCJPG00005015269) #8	PIP5K1A (ENSCJPG00005015268)	VPS72 (ENSCJPG00005015267) #9	TMOD4 (ENSCJPG00005015266) #10	ENSCJPG00005015265 #11	ENSCJPG00005015264	SEMA6C (ENSCJPG00005015263) #13	ENSCJPG00005015262 #14	MLLT11 (ENSCJPG00005015261) #15	CDC42SE1 (ENSCJPG00005015260) #16	PRUNE1 (ENSCJPG00005015259) #19	MINDY1 (ENSCJPG00005015258) #20	CERS2 (ENSCJPG00005015257) #22	SETDB1 (ENSCJPG00005015256)	ENSCJPG00005015255	ENSCJPG00005015251	ENSCJPG00005015249	ARNT (ENSCJPG00005015188) #24	CTSS (ENSCJPG00005015187) #26	SSR2 (ENSCJPG00005015186)	ENSCJPG00005015185	VSIG8 (ENSCJPG00005015184)	CFAP45 (ENSCJPG00005015183)	TAGLN2 (ENSCJPG00005015182)	IGSF9 (ENSCJPG00005015180)	DUSP23 (ENSCJPG00005015178)	ENSCJPG00005015177	ACKR1 (ENSCJPG00005015175)
Neognathae_b	ANCESTRAL SPECIES	34	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00990000206813	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734.g #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847	ENSGT00390000002799	ENSGT00940000157203	ENSGT00940000158423	ENSGT00940000164422	ENSGT00390000014273.b	ENSGT00390000005869.a
Passeriformes	ANCESTRAL SPECIES	36	ENSGT00390000004097.b	ENSGT00940000160472	ENSGT00390000010652.B	ENSGT00940000160806	ENSGT00390000016136	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT00940000158641 #13	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000164936 #29	ENSGT00940000156893 #30	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a #31	ENSGT00530000063760.b #32	ENSGT00550000075028
Great tit	MODERN SPECIES	18	ENSPMJG00000003066	CRTC2 (ENSPMJG00000003064)	JTB (ENSPMJG00000003060)	CREB3L4 (ENSPMJG00000003052)	RAB13 (ENSPMJG00000003050)	ENSPMJG00000003033	ENSPMJG00000003032 #26	ARHGEF2 (ENSPMJG00000002972)	ENSPMJG00000002967	NUDT17 (ENSPMJG00000002961)	SEMA6C (ENSPMJG00000002953) #13	MLLT11 (ENSPMJG00000002952) #15	ENSPMJG00000002949 #16	PRUNE1 (ENSPMJG00000002944) #19	MINDY1 (ENSPMJG00000002938) #20	CERS2 (ENSPMJG00000002934) #22	ENSPMJG00000002931	ARNT (ENSPMJG00000002875) #24	CTSK (ENSPMJG00000001799) #25	ECM1 (ENSPMJG00000001797)	ENSPMJG00000001784	RPRD2 (ENSPMJG00000001737)	PRPF3 (ENSPMJG00000001723)	ENSPMJG00000001710	ENSPMJG00000001707 #29	ENSPMJG00000001699 #30	ANP32E (ENSPMJG00000001694) #31	PLEKHO1 (ENSPMJG00000001683) #32	VPS45 (ENSPMJG00000001675)	OTUD7B (ENSPMJG00000001674)	MTMR11 (ENSPMJG00000001664)
Passeriformes_d	ANCESTRAL SPECIES	26	ENSGT00390000014184	ENSGT00390000004097.b	ENSGT00940000160472	ENSGT00390000010652.B	ENSGT00940000160806	ENSGT00390000016136	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT00940000158641 #13	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893 #30	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a #31	ENSGT00530000063760.b #32	ENSGT00550000075028	ENSGT00940000159172
Passeriformes_g	ANCESTRAL SPECIES	27	ENSGT00390000014184	ENSGT00390000004097.b	ENSGT00940000160472	ENSGT00390000010652.B	ENSGT00940000160806	ENSGT00390000016136	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT00940000158641 #13	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893 #30	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a #31	ENSGT00530000063760.b #32	ENSGT00550000075028	ENSGT00940000159172
Passeroidea	ANCESTRAL SPECIES	28	ENSGT00390000014184	ENSGT00390000004097.b	ENSGT00940000160472	ENSGT00390000010652.B	ENSGT00940000160806	ENSGT00390000016136	ENSGT00940000159989	ENSGT00950000182891.a.a.b.a.b.a	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT00940000158641 #13	ENSGT00940000160112 #16	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00390000006215	ENSGT00940000159348.e	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00940000166610	ENSGT00940000156893 #30	ENSGT00390000002049.c.a	ENSGT00950000182907.a.a #31	ENSGT00530000063760.b #32	ENSGT00550000075028	ENSGT00940000159172
Zebra finch	MODERN SPECIES	18	CRTC2 (ENSTGUG00000027794)	CREB3L4 (ENSTGUG00000028210)	JTB (ENSTGUG00000017380)	SLC39A1 (ENSTGUG00000028450)	RAB13 (ENSTGUG00000025090)	RPS27 (ENSTGUG00000024584)	ENSTGUG00000024864	ENSTGUG00000027726 #26	ARHGEF2 (ENSTGUG00000021755)	ENSTGUG00000026016	ENSTGUG00000021515	SEMA6C (ENSTGUG00000025575) #13	CDC42SE1 (ENSTGUG00000004784) #16	PRUNE1 (ENSTGUG00000004774) #19	MINDY1 (ENSTGUG00000023060) #20	CERS2 (ENSTGUG00000004716) #22	SETDB1 (ENSTGUG00000004684)	ENSTGUG00000023543	ARNT (ENSTGUG00000004647) #24	CTSK (ENSTGUG00000027582) #25	ECM1 (ENSTGUG00000021608)	ENSTGUG00000004602	RPRD2 (ENSTGUG00000004590)	PRPF3 (ENSTGUG00000004552)	ENSTGUG00000028735	CA14 (ENSTGUG00000020197) #30	APH1A (ENSTGUG00000020297)	ANP32E (ENSTGUG00000004542) #31	PLEKHO1 (ENSTGUG00000019427) #32	VPS45 (ENSTGUG00000004493)	OTUD7B (ENSTGUG00000004479)
Common canary	MODERN SPECIES	81	ENSSCAG00000012729	MTX1 (ENSSCAG00000012724)	THBS3 (ENSSCAG00000012370)	ENSSCAG00000012249	ENSSCAG00000012243	ENSSCAG00000012237	CLK2 (ENSSCAG00000012209)	ENSSCAG00000012198	FDPS (ENSSCAG00000012185)	ENSSCAG00000012172	ASH1L (ENSSCAG00000012148)	MSTO1 (ENSSCAG00000012061)	ENSSCAG00000012029	MLLT11 (ENSSCAG00000012022) #15	PRUNE1 (ENSSCAG00000012016) #19	CERS2 (ENSSCAG00000012013) #22	SETDB1 (ENSSCAG00000012005)	ARNT (ENSSCAG00000011985) #24	CTSK (ENSSCAG00000011979) #25	ENSSCAG00000011971	PRPF3 (ENSSCAG00000011963)	ENSSCAG00000011951	ENSSCAG00000011949 #29	APH1A (ENSSCAG00000011945)	CA14 (ENSSCAG00000011941) #30	ANP32E (ENSSCAG00000011934) #31	PLEKHO1 (ENSSCAG00000011918) #32	VPS45 (ENSSCAG00000011835)	OTUD7B (ENSSCAG00000011804)	ENSSCAG00000011796	SF3B4 (ENSSCAG00000011792)
Medium ground finch	MODERN SPECIES	314									NDUFS2 (ENSGFOG00000008715)	RPS27 (ENSGFOG00000008709)	ENSGFOG00000008698 #26	ARHGEF2 (ENSGFOG00000008683)	MLLT11 (ENSGFOG00000008360) #15	ENSGFOG00000008349 #20	PRUNE1 (ENSGFOG00000007714) #19	CERS2 (ENSGFOG00000007678) #22	SETDB1 (ENSGFOG00000007653)	ARNT (ENSGFOG00000007566) #24	CTSK (ENSGFOG00000007554) #25	ENSGFOG00000007506	PRPF3 (ENSGFOG00000007494)	APH1A (ENSGFOG00000007489)	ANP32E (ENSGFOG00000007486) #31	PLEKHO1 (ENSGFOG00000007477) #32	VPS45 (ENSGFOG00000007475)	OTUD7B (ENSGFOG00000007466)	ENSGFOG00000007463	SV2A (ENSGFOG00000007454)	TXNIP (ENSGFOG00000007450)	RBM8A (ENSGFOG00000007446)	LIX1L (ENSGFOG00000007433)
Neognathae_c	ANCESTRAL SPECIES	36	ENSGT00960000189065	ENSGT00530000064050 #8	ENSGT00990000206813	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734.g #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00940000158641 #13	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00940000158341	ENSGT00530000063074.a	ENSGT01030000234539.a.a.b.a.a	ENSGT00390000013847	ENSGT00390000002799	ENSGT00940000157203	ENSGT00940000158423	ENSGT00940000164422	ENSGT00390000014273.b	ENSGT00390000005869.a
Kakapo	MODERN SPECIES	60	UFC1 (ENSSHBG00005016443)	TOMM40L (ENSSHBG00005016446)	NR1I3 (ENSSHBG00005016450)	MPZ (ENSSHBG00005016457)	SDHC (ENSSHBG00005016460)	CFAP126 (ENSSHBG00005016463)	VSIG8 (ENSSHBG00005016466)	CFAP45 (ENSSHBG00005016470)	TAGLN2 (ENSSHBG00005016474)	IGSF9 (ENSSHBG00005016477)	ENSSHBG00005016482	ENSSHBG00005016484	CADM3 (ENSSHBG00005016488)	PRUNE1 (ENSSHBG00005016494) #19	MINDY1 (ENSSHBG00005016500) #20	CERS2 (ENSSHBG00005016507) #22	SETDB1 (ENSSHBG00005016514)	ARNT (ENSSHBG00005005821) #24	CTSK (ENSSHBG00005006020) #25	CTSS (ENSSHBG00005006037) #26	ENSSHBG00005006069	ENSSHBG00005006090	KIRREL1 (ENSSHBG00005006115)	ENSSHBG00005006169	ETV3 (ENSSHBG00005006200)	ETV3L (ENSSHBG00005006226)	ARHGEF11 (ENSSHBG00005006414)	ENSSHBG00005006579	ANP32E (ENSSHBG00005006621) #31	PLEKHO1 (ENSSHBG00005006648) #32	VPS45 (ENSSHBG00005006666)
Golden eagle	MODERN SPECIES	25	ZNF687 (ENSACCG00020000991) #7	PSMD4 (ENSACCG00020001008) #8	ENSACCG00020001023	PIP5K1A (ENSACCG00020001051)	VPS72 (ENSACCG00020001095) #9	TMOD4 (ENSACCG00020001121) #10	SCNM1 (ENSACCG00020001155) #11	LYSMD1 (ENSACCG00020001168)	SEMA6C (ENSACCG00020001201) #13	GABPB2 (ENSACCG00020001233) #14	MLLT11 (ENSACCG00020001253) #15	CDC42SE1 (ENSACCG00020001273) #16	BNIPL (ENSACCG00020001318) #18	PRUNE1 (ENSACCG00020001410) #19	MINDY1 (ENSACCG00020001441) #20	CERS2 (ENSACCG00020001469) #22	SETDB1 (ENSACCG00020001501)	ENSACCG00020001538	ARNT (ENSACCG00020001572) #24	CTSK (ENSACCG00020001655) #25	CTSS (ENSACCG00020001709) #26	ENSACCG00020001764	ARHGEF2 (ENSACCG00020001874)	ANKRD35 (ENSACCG00020001982)	PIAS3 (ENSACCG00020002050)	NUDT17 (ENSACCG00020002095)	POLR3C (ENSACCG00020002120)	RNF115 (ENSACCG00020002154)	ITGA10 (ENSACCG00020002214)	ENSACCG00020002265	PEX11B (ENSACCG00020002287)
African ostrich	MODERN SPECIES	361										GABPB2 (ENSSCUG00000004511) #14	MLLT11 (ENSSCUG00000004516) #15	ENSSCUG00000004520 #16	BNIPL (ENSSCUG00000004524) #18	PRUNE1 (ENSSCUG00000004525) #19	MINDY1 (ENSSCUG00000004530) #20	CERS2 (ENSSCUG00000004539) #22	SETDB1 (ENSSCUG00000004548)	ENSSCUG00000004552	ARNT (ENSSCUG00000004557) #24	CTSK (ENSSCUG00000004565) #25	ENSSCUG00000004573 #26
Australian saltwater crocodile	MODERN SPECIES	25	TNFAIP8L2 (ENSCPRG00005007532) #12	ENSCPRG00005007522	SEMA6C (ENSCPRG00005007512) #13	ENSCPRG00005007502	GABPB2 (ENSCPRG00005007492) #14	ENSCPRG00005007485	ENSCPRG00005007482	SETDB1 (ENSCPRG00005007301)	ARNT (ENSCPRG00005005374) #24	CTSK (ENSCPRG00005004905) #25	THEM4 (ENSCPRG00005004889)	S100A10 (ENSCPRG00005004877)	ENSCPRG00005004871	PRUNE1 (ENSCPRG00005004862) #19	MINDY1 (ENSCPRG00005004850) #20	CERS2 (ENSCPRG00005004837) #22	ENSCPRG00005004833	ENSCPRG00005004829	KHDC4 (ENSCPRG00005004670)	RIT1 (ENSCPRG00005004646)	SYT11 (ENSCPRG00005004624)	ENSCPRG00005003828	MSTO1 (ENSCPRG00005003685)	DAP3 (ENSCPRG00005003641)	ASH1L (ENSCPRG00005003539)	ENSCPRG00005003520	ENSCPRG00005003513	FDPS (ENSCPRG00005003507)	PKLR (ENSCPRG00005003450)	ENSCPRG00005003431	CLK2 (ENSCPRG00005003335)
Cryptodira	ANCESTRAL SPECIES	20	ENSGT00390000008281	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000165314	ENSGT00940000154996.a.a	ENSGT00940000161521	ENSGT00940000163537	ENSGT00940000160047	ENSGT00940000154197	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000154969.a	ENSGT00950000183094.a	ENSGT00390000011497
Testudinoidea	ANCESTRAL SPECIES	17	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000165314	ENSGT00940000154996.a.a	ENSGT00940000161521	ENSGT00940000163537	ENSGT00940000160047	ENSGT00940000154197	ENSGT01030000234540.B.a.a.c.a	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176.k.a.a #26	ENSGT00940000155176.l #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.a	ENSGT00940000161136	ENSGT01090000260003.a.b.b.a.a.a.b.b.b	ENSGT00390000006215	ENSGT00940000154969.a
Emydidae	ANCESTRAL SPECIES	18	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000165314	ENSGT00940000154996.a.a	ENSGT00940000161521	ENSGT00940000163537	ENSGT00940000160047	ENSGT00940000154197	ENSGT01030000234540.B.a.a.c.a	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176.k.a.a #26	ENSGT00940000155176.l #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.a	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000154969.a	ENSGT00950000183094.a
Three-toed box turtle	MODERN SPECIES	102	OAZ3 (ENSTMTG00000007792)	TDRKH (ENSTMTG00000007731)	ENSTMTG00000007710	ENSTMTG00000007700	RORC (ENSTMTG00000007685)	C2CD4D (ENSTMTG00000007644)	THEM4 (ENSTMTG00000007589)	S100A10 (ENSTMTG00000007571)	ENSTMTG00000007558	MLLT11 (ENSTMTG00000007551) #15	CDC42SE1 (ENSTMTG00000007541) #16	BNIPL (ENSTMTG00000007525) #18	PRUNE1 (ENSTMTG00000007499) #19	MINDY1 (ENSTMTG00000007470) #20	ANXA9 (ENSTMTG00000007428) #21	CERS2 (ENSTMTG00000007401) #22	SETDB1 (ENSTMTG00000007340)	ENSTMTG00000007315	ARNT (ENSTMTG00000007214) #24	CTSK (ENSTMTG00000007192) #25	ENSTMTG00000007160 #26	ENSTMTG00000007143 #27	GOLPH3L (ENSTMTG00000007124)	ENSTMTG00000007103	ENSA (ENSTMTG00000007092)	ENSTMTG00000007077	ECM1 (ENSTMTG00000007038)	ENSTMTG00000003936	RPRD2 (ENSTMTG00000003690)	PRPF3 (ENSTMTG00000003651)	MRPS21 (ENSTMTG00000003635)
painted turtle	MODERN SPECIES	738	MRPL9 (ENSCPBG00000008844)	OAZ3 (ENSCPBG00000008836)	TDRKH (ENSCPBG00000008824)	ENSCPBG00000008815	ENSCPBG00000008812	RORC (ENSCPBG00000008805)	C2CD4D (ENSCPBG00000008801)	THEM4 (ENSCPBG00000008796)	S100A10 (ENSCPBG00000008792)	MLLT11 (ENSCPBG00000008788) #15	CDC42SE1 (ENSCPBG00000008784) #16	BNIPL (ENSCPBG00000008771) #18	PRUNE1 (ENSCPBG00000008763) #19	MINDY1 (ENSCPBG00000008750) #20	ANXA9 (ENSCPBG00000008736) #21	CERS2 (ENSCPBG00000008726) #22	SETDB1 (ENSCPBG00000008716)	ENSCPBG00000008707	ARNT (ENSCPBG00000008682) #24	CTSK (ENSCPBG00000008661) #25	ENSCPBG00000008648 #26	ENSCPBG00000008637 #26	HORMAD1 (ENSCPBG00000008626) #27	GOLPH3L (ENSCPBG00000008616)	ENSCPBG00000008603	ENSA (ENSCPBG00000008598)	ENSCPBG00000008588	ADAMTSL4 (ENSCPBG00000008567)	ECM1 (ENSCPBG00000008276)	ENSCPBG00000008240	RPRD2 (ENSCPBG00000008228)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000161581	ENSGT00940000159364	ENSGT00940000158358.f	ENSGT00940000154996.a.a	ENSGT00940000161521	ENSGT00940000163537	ENSGT00940000160047	ENSGT00940000154197	ENSGT01030000234540.B.a.a.c.a	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176.k.a.a #26	ENSGT00940000155176.l #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000154969.a	ENSGT00950000183094.a
Abingdon island giant tortoise	MODERN SPECIES	2613	OAZ3 (ENSCABG00000008770)	TDRKH (ENSCABG00000008766)	ENSCABG00000008764	ENSCABG00000008763	RORC (ENSCABG00000008413)	C2CD4D (ENSCABG00000008410)	THEM4 (ENSCABG00000008409)	S100A10 (ENSCABG00000008407)	ENSCABG00000008386	MLLT11 (ENSCABG00000008380) #15	CDC42SE1 (ENSCABG00000008376) #16	BNIPL (ENSCABG00000008371) #18	PRUNE1 (ENSCABG00000008232) #19	MINDY1 (ENSCABG00000008231) #20	ANXA9 (ENSCABG00000008227) #21	CERS2 (ENSCABG00000008225) #22	SETDB1 (ENSCABG00000008224)	ENSCABG00000008222	ARNT (ENSCABG00000007049) #24	CTSK (ENSCABG00000006984) #25	ENSCABG00000006981 #26	ENSCABG00000006978 #26	ENSCABG00000006975 #26	ENSCABG00000006966 #26	ENSCABG00000006945 #26	HORMAD1 (ENSCABG00000006934) #27	GOLPH3L (ENSCABG00000006929)	ENSCABG00000006927	ENSA (ENSCABG00000006924)
Goode s thornscrub tortoise	MODERN SPECIES	16	MRPL9 (ENSGEVG00005018482)	OAZ3 (ENSGEVG00005018446)	TDRKH (ENSGEVG00005018412)	ENSGEVG00005018375	RORC (ENSGEVG00005017752)	C2CD4D (ENSGEVG00005017642)	THEM4 (ENSGEVG00005017627)	S100A10 (ENSGEVG00005017611)	ENSGEVG00005017489	MLLT11 (ENSGEVG00005017456) #15	CDC42SE1 (ENSGEVG00005017444) #16	BNIPL (ENSGEVG00005017095) #18	PRUNE1 (ENSGEVG00005016967) #19	MINDY1 (ENSGEVG00005016943) #20	ANXA9 (ENSGEVG00005016835) #21	CERS2 (ENSGEVG00005016787) #22	SETDB1 (ENSGEVG00005016733)	ENSGEVG00005016666	ARNT (ENSGEVG00005016585) #24	CTSK (ENSGEVG00005016496) #25	CTSS (ENSGEVG00005016424) #26	ENSGEVG00005016308 #26	ENSGEVG00005016267 #27	GOLPH3L (ENSGEVG00005016244)	ENSGEVG00005016208	ENSA (ENSGEVG00005016162)	MCL1 (ENSGEVG00005016126)	ADAMTSL4 (ENSGEVG00005015036)	ECM1 (ENSGEVG00005014720)	ENSGEVG00005014603	RPRD2 (ENSGEVG00005014526)
Chinese turtle	MODERN SPECIES	1774								FDPS (ENSPSIG00000005249)	ASH1L (ENSPSIG00000005574)	DAP3 (ENSPSIG00000005834)	MSTO1 (ENSPSIG00000006370)	ENSPSIG00000007306	SYT11 (ENSPSIG00000007838)	RIT1 (ENSPSIG00000007923)	KHDC4 (ENSPSIG00000008263)	CERS2 (ENSPSIG00000008297) #22	SETDB1 (ENSPSIG00000008407)	ARNT (ENSPSIG00000008480) #24	CTSK (ENSPSIG00000010266) #25
Lepidosauria	ANCESTRAL SPECIES	36	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698	ENSGT00940000162698
Episquamata	ANCESTRAL SPECIES	17	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698
Toxicofera	ANCESTRAL SPECIES	27	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698
Elapidae	ANCESTRAL SPECIES	25	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413.`c	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.e.b	ENSGT00390000014244.jb.a.f	ENSGT00390000014244.jb.a.e.a	ENSGT00390000014244.jb.b	ENSGT00940000160649
Elapidae_a	ANCESTRAL SPECIES	51	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641.f #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413.`c	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a.e.b	ENSGT00390000014244.jb.a.f	ENSGT00390000014244.jb.a.e.a	ENSGT00390000014244.jb.b	ENSGT00940000160649
Acanthophiinae	ANCESTRAL SPECIES	250																ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	541																ENSPTXG00000014163 #22	ENSPTXG00000014140
Eastern brown snake	MODERN SPECIES	542																ENSPTXG00000014169 #22	ENSPTXG00000014165
Mainland tiger snake	MODERN SPECIES	1746																CERS2 (ENSNSUG00000003124) #22
Blue-lipped sea krait	MODERN SPECIES	2551							ENSLLTG00000000733 #13	ENSLLTG00000000706	GABPB2 (ENSLLTG00000000688) #14	MLLT11 (ENSLLTG00000000680) #15	ENSLLTG00000000665 #16	BNIPL (ENSLLTG00000000649) #18	PRUNE1 (ENSLLTG00000000636) #19	MINDY1 (ENSLLTG00000000613) #20	ENSLLTG00000000572 #21	CERS2 (ENSLLTG00000000539) #22	SETDB1 (ENSLLTG00000000506)	ARNT (ENSLLTG00000000401) #24	CTSK (ENSLLTG00000000356) #25	CTSS (ENSLLTG00000000316) #26	HORMAD1 (ENSLLTG00000000276) #27	GOLPH3L (ENSLLTG00000000241)	ENSLLTG00000000219	ENSA (ENSLLTG00000000208)	MCL1 (ENSLLTG00000014331)	ENSLLTG00000014326	ENSLLTG00000014316	ENSLLTG00000014281	ENSLLTG00000014261
Lizard	MODERN SPECIES	1486																CERS2 (ENSACAG00000011997) #22	SETDB1 (ENSACAG00000011992)	ENSACAG00000034887	ARNT (ENSACAG00000011254) #24
Laterata	ANCESTRAL SPECIES	35	ENSGT00940000154703	ENSGT00390000017503 #9	ENSGT00940000158734 #10	ENSGT00390000010811 #11	ENSGT00940000160002	ENSGT00390000003488.b #12	ENSGT00940000158641 #13	ENSGT00940000154412.B.a	ENSGT00940000156794 #14	ENSGT00390000009895 #15	ENSGT00940000160112 #16	ENSGT00940000161723 #18	ENSGT00450000040262 #19	ENSGT00390000016607.b #20	ENSGT00940000161835 #21	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT01040000240780	ENSGT00940000157585 #24	ENSGT00940000157759 #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT01050000244970.a	ENSGT00390000014244.jb.a	ENSGT00390000014244.jb.b	ENSGT00940000160649	ENSGT00390000000698
Common wall lizard	MODERN SPECIES	7	TMOD4 (ENSPMRG00000016561) #10	SCNM1 (ENSPMRG00000016554) #11	LYSMD1 (ENSPMRG00000016550)	TNFAIP8L2 (ENSPMRG00000016547) #12	ENSPMRG00000016544	SEMA6C (ENSPMRG00000016528) #13	ENSPMRG00000016518	GABPB2 (ENSPMRG00000016512) #14	MLLT11 (ENSPMRG00000016508) #15	CDC42SE1 (ENSPMRG00000016504) #16	BNIPL (ENSPMRG00000016496) #18	PRUNE1 (ENSPMRG00000016487) #19	MINDY1 (ENSPMRG00000021029) #20	ENSPMRG00000021015 #21	ENSPMRG00000021009	CERS2 (ENSPMRG00000021000) #22	SETDB1 (ENSPMRG00000020991)	ENSPMRG00000020987	ARNT (ENSPMRG00000020956) #24	CTSK (ENSPMRG00000020943) #25	CTSS (ENSPMRG00000020938) #26	HORMAD1 (ENSPMRG00000020931) #27	ENSPMRG00000020926	GOLPH3L (ENSPMRG00000020922)	ENSPMRG00000020917	ENSA (ENSPMRG00000020911)	MCL1 (ENSPMRG00000020907)	ENSPMRG00000020904	ENSPMRG00000020892	SELENBP1 (ENSPMRG00000020868)	ENSPMRG00000020855
Argentine black and white tegu	MODERN SPECIES	80	IGSF9 (ENSSMRG00000021194)	TAGLN2 (ENSSMRG00000021195)	CFAP45 (ENSSMRG00000021196)	ENSSMRG00000021197	ENSSMRG00000021199	ENSSMRG00000021202	SEMA6C (ENSSMRG00000021205) #13	ENSSMRG00000021217	GABPB2 (ENSSMRG00000021219) #14	ENSSMRG00000021221 #15	CDC42SE1 (ENSSMRG00000021222) #16	BNIPL (ENSSMRG00000021224) #18	PRUNE1 (ENSSMRG00000021226) #19	MINDY1 (ENSSMRG00000021229) #20	ENSSMRG00000021231 #21	CERS2 (ENSSMRG00000021232) #22	SETDB1 (ENSSMRG00000021234)	ARNT (ENSSMRG00000021235) #24	CTSK (ENSSMRG00000021238) #25	CTSS (ENSSMRG00000021239) #26	HORMAD1 (ENSSMRG00000021241) #27	GOLPH3L (ENSSMRG00000021243)	ENSSMRG00000021244	ENSA (ENSSMRG00000021245)	MCL1 (ENSSMRG00000021247)	RFX5 (ENSSMRG00000021248)	ENSSMRG00000021249	ENSSMRG00000021250	ENSSMRG00000021263	POGZ (ENSSMRG00000021264)	ENSSMRG00000021265
tuatara	MODERN SPECIES	157										GABPB2 (ENSSPUG00000003112) #14	MLLT11 (ENSSPUG00000003088) #15	CDC42SE1 (ENSSPUG00000003078) #16	BNIPL (ENSSPUG00000003069) #18	PRUNE1 (ENSSPUG00000003052) #19	MINDY1 (ENSSPUG00000003045) #20	CERS2 (ENSSPUG00000003025) #22	SETDB1 (ENSSPUG00000002969)	ARNT (ENSSPUG00000002948) #24	CTSK (ENSSPUG00000002928) #25	CTSS (ENSSPUG00000002914) #26	HORMAD1 (ENSSPUG00000002757) #27	GOLPH3L (ENSSPUG00000002733)	ENSA (ENSSPUG00000002726)	MCL1 (ENSSPUG00000002720)	ENSSPUG00000002712	ENSSPUG00000002704	ENSSPUG00000002696	POGZ (ENSSPUG00000002680)	PSMB4 (ENSSPUG00000002593)	ENSSPUG00000002546	TUFT1 (ENSSPUG00000002499)
Anura	ANCESTRAL SPECIES	182																ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00960000186669	ENSGT00940000157585 #24	ENSGT00940000157759.a #25	ENSGT00940000157759.b #25	ENSGT00940000155176 #26	ENSGT00390000018130.a.a.a #27	ENSGT00390000007153.a.b	ENSGT00950000183103.d.a.a	ENSGT00940000155413	ENSGT01090000260003.a.b.b.a.a.a.b.b	ENSGT00940000161136	ENSGT00390000006215	ENSGT00940000154969.a	ENSGT00950000183094.a
Frog	MODERN SPECIES	8	ECM1 (ENSXETG00000036393)	adamtsl4 (ENSXETG00000018086)	ENSXETG00000047405	mcl1 (ENSXETG00000008910)	ensa (ENSXETG00000026684)	onecut1.2 (ENSXETG00000040174)	golph3l (ENSXETG00000008912)	hormad1 (ENSXETG00000008913) #27	ctss (ENSXETG00000008914) #26	XB986811 [provisional:ctsk] (ENSXETG00000008916) #25	ENSXETG00000048153	ctsk (ENSXETG00000035558) #25	ENSXETG00000035955 #26	ENSXETG00000026666 #26	anxa9 (ENSXETG00000031026)	cers2 (ENSXETG00000038346) #22	setdb1 (ENSXETG00000008936)	ENSXETG00000045572	arnt (ENSXETG00000008942) #24	ENSXETG00000047960	ENSXETG00000035861 #26	ENSXETG00000037802 #26	ENSXETG00000049438	ENSXETG00000045016	crp.1 (ENSXETG00000003976)	ENSXETG00000046147	ENSXETG00000045396 #26	ENSXETG00000037685 #26	crp.4 (ENSXETG00000027272)	XB5856184 [provisional:crp] (ENSXETG00000046752)	XB5886928 [provisional] (ENSXETG00000030596)
Leishan spiny toad	MODERN SPECIES	4	ARNT (ENSLLEG00000025310) #24	CTXND1 (ENSLLEG00000025268)	SETDB1 (ENSLLEG00000024673)	ENSLLEG00000024585	ENSLLEG00000024540	ENSLLEG00000024492	ENSLLEG00000024452	ENSLLEG00000024420	ENSLLEG00000024371	ENSLLEG00000024319	ENSLLEG00000024267	ENSLLEG00000024244	ENSLLEG00000024205	ENSLLEG00000024161	ENSLLEG00000024071	CERS2 (ENSLLEG00000023791) #22	ENSLLEG00000023770	ENSLLEG00000023756	KIRREL1 (ENSLLEG00000023640)	ENSLLEG00000023606	APH1A (ENSLLEG00000023550)	ENSLLEG00000023463 #30	ENSLLEG00000023443	ENSLLEG00000023375	ENSLLEG00000023357	RAB25 (ENSLLEG00000023071)	LAMTOR2 (ENSLLEG00000022949)	UBQLN4 (ENSLLEG00000022159)	ENSLLEG00000022057	NAXE (ENSLLEG00000021902)	TTC24 (ENSLLEG00000021781)
Coelacanth	MODERN SPECIES	1495							ENSLACG00000002090	C1orf43 (ENSLACG00000002718)	UBAP2L (ENSLACG00000003117)	ENSLACG00000007145	ADAMTSL4 (ENSLACG00000008278)	bnipl (ENSLACG00000009059)	PRUNE1 (ENSLACG00000009440) #19	MINDY1 (ENSLACG00000009951) #20	ENSLACG00000010189	CERS2 (ENSLACG00000010852) #22	SETDB1 (ENSLACG00000011159)
Actinopterygii	ANCESTRAL SPECIES	223				ENSGT00940000164119	ENSGT00940000154201.a.a.b.d	ENSGT00940000154716	ENSGT00940000161136	ENSGT00940000159348	ENSGT00950000183094.a	ENSGT00390000011497	ENSGT00390000018360	ENSGT00940000156893 #30	ENSGT00390000002049.d	ENSGT01030000234542.b.b.a.a.b	ENSGT00940000157006	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00960000186669	ENSGT00940000157585 #24	ENSGT00390000002799	ENSGT00940000157203	ENSGT00940000158423
Neopterygii	ANCESTRAL SPECIES	45	ENSGT00950000182908.A	ENSGT00940000159154	ENSGT00390000006096.a.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893 #30	ENSGT00390000018360	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716	ENSGT00940000154201.a.a.b.d	ENSGT00940000164119	ENSGT01030000234515.a.b.a.a #22	ENSGT00940000157471	ENSGT00940000157585 #24	ENSGT00940000158423	ENSGT00390000002799	ENSGT00940000157203	ENSGT00390000009464	ENSGT00390000015248	ENSGT00940000156698	ENSGT00900000141033.b.b	ENSGT00900000141074	ENSGT00390000007801	ENSGT00940000159919	ENSGT00940000161355	ENSGT00940000162071	ENSGT00940000165956
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	400										ENSGT00950000182971.B.b	ENSGT00940000166681	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT01030000234515.a.b.a.a.e #22
Clupeocephala	ANCESTRAL SPECIES	127	ENSGT00730000111747.b	ENSGT00950000182971.B.b	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22
Otomorpha	ANCESTRAL SPECIES	6	ENSGT00940000158021.c	ENSGT00940000165795	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.b.b.a	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b	ENSGT00940000160704.a.b	ENSGT01050000244814.a.a.b.b.b.a.a.d.b	ENSGT01020000230438.B.a.a	ENSGT01100000263571.i.a.b
Clupeiformes	ANCESTRAL SPECIES	53	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182891.b.b.b.b.a	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00940000177218	ENSGT00940000164936.a #29	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154703.i	ENSGT00530000064050.a #8	ENSGT00950000182929.B.b.a	ENSGT00950000182929.B.a.b	ENSGT00390000003308.a.b	ENSGT00940000165835.b	ENSGT01050000244883.B.d	ENSGT00730000111056.h	ENSGT00990000204044	ENSGT00940000158616	ENSGT00940000155256.d.b.b	ENSGT00390000015518	ENSGT00950000182894.D	ENSGT00990000203527.b	ENSGT00990000203527.a.a.a.e.b
Atlantic herring	MODERN SPECIES	10	efna1a (ENSCHAG00000014797)	dpm3 (ENSCHAG00000014792)	trim46b (ENSCHAG00000014786)	s100a10b (ENSCHAG00000014774)	snx27a (ENSCHAG00000014659)	chrna11 (ENSCHAG00000014329)	rps27.1 (ENSCHAG00000014262)	lrrc71 (ENSCHAG00000014195)	ENSCHAG00000013044	scamp3 (ENSCHAG00000013007)	crabp2b (ENSCHAG00000012995)	mrps21 (ENSCHAG00000012972)	ENSCHAG00000012941 #29	rprd2a (ENSCHAG00000012933)	celf3a (ENSCHAG00000012901)	cers2a (ENSCHAG00000012840) #22	ENSCHAG00000012826	ENSCHAG00000012508	psmd4a (ENSCHAG00000012208) #8	ENSCHAG00000012162	ENSCHAG00000012150	apoa4a (ENSCHAG00000012121)	apoa4a (ENSCHAG00000012113)	ENSCHAG00000012111	tomm40l (ENSCHAG00000011996)	ENSCHAG00000011484	ENSCHAG00000011466	lipea (ENSCHAG00000010782)	slc9a3.2 (ENSCHAG00000009668)	ago3b (ENSCHAG00000001696)	olah (ENSCHAG00000001201)
Denticle herring	MODERN SPECIES	12	dpm3 (ENSDCDG00000026381)	trim46b (ENSDCDG00000026385)	s100a10b (ENSDCDG00000026404)	snx27a (ENSDCDG00000026420)	chrna11 (ENSDCDG00000026894)	rps27.1 (ENSDCDG00000026898)	lrrc71 (ENSDCDG00000026899)	ash1l (ENSDCDG00000026916)	ENSDCDG00000027810	scamp3 (ENSDCDG00000027813)	crabp2b (ENSDCDG00000027815)	mrps21 (ENSDCDG00000027816)	ciarta (ENSDCDG00000027818)	ENSDCDG00000027819	celf3a (ENSDCDG00000027831)	cers2a (ENSDCDG00000027900) #22	psmd4a (ENSDCDG00000027909) #8	apoea (ENSDCDG00000027971)	apoa4a (ENSDCDG00000028021)	ENSDCDG00000028025	tomm40l (ENSDCDG00000028040)	ENSDCDG00000028055	lipea (ENSDCDG00000028235)	ENSDCDG00000028334	slc9a3.1 (ENSDCDG00000028338)	ago3b (ENSDCDG00000028648)	olah (ENSDCDG00000031575)	tekt2 (ENSDCDG00000031577)	ENSDCDG00000031582	ENSDCDG00000031587	ENSDCDG00000031590
Otophysi	ANCESTRAL SPECIES	64	ENSGT00940000163756.c.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT01060000248708.b	ENSGT00940000154947.k	ENSGT00940000157471.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b	ENSGT00950000183212.C.c.a	ENSGT00940000165795	ENSGT00940000158021.c	ENSGT00390000008892	ENSGT00940000159919.b	ENSGT00940000166681	ENSGT00390000010118.c.b	ENSGT00950000182971.B.b	ENSGT00940000156524.a #7	ENSGT00940000164368.A	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00950000183065.B.f
Characiphysae	ANCESTRAL SPECIES	75	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT01060000248708.b	ENSGT00940000154947.k	ENSGT00940000157471.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc.b	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b	ENSGT00950000183212.C.c.a	ENSGT00940000165795	ENSGT00940000158021.c	ENSGT00390000008892	ENSGT00940000159919.b	ENSGT00940000166681	ENSGT00390000010118.c.b	ENSGT00950000182971.B.b	ENSGT00940000156524.a #7	ENSGT00940000164368.A	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00950000183065.B.f
Channel catfish	MODERN SPECIES	3	EFNA1 (ENSIPUG00000007772)	ENSIPUG00000007783	ENSIPUG00000007805	Ndufv1 (ENSIPUG00000007826)	ENSIPUG00000007871	si:ch211-81a5.8 (ENSIPUG00000007878)	clk2a (ENSIPUG00000007888)	setdb1a (ENSIPUG00000007923)	lrrc71 (ENSIPUG00000007933)	ash1l (ENSIPUG00000007968)	scamp3 (ENSIPUG00000008098)	crabp2 (ENSIPUG00000008111)	mrps21 (ENSIPUG00000008123)	rprd2 (ENSIPUG00000008155)	celf3a (ENSIPUG00000008218)	cers2 (ENSIPUG00000008297) #22	tomm40l (ENSIPUG00000008316)	ENSIPUG00000008367	lipea (ENSIPUG00000008463)	slc9a3.1 (ENSIPUG00000008503)	ago3b (ENSIPUG00000008548)	olah (ENSIPUG00000008685)	Tekt2 (ENSIPUG00000008755)	ENSIPUG00000008796	si:dkey-211g8.6 (ENSIPUG00000008802)	usf2 (ENSIPUG00000008820)	FPR1 (ENSIPUG00000008860)	slc2a3a (ENSIPUG00000008894)	ENSIPUG00000008929	cacng6a (ENSIPUG00000008942)	cacng8a (ENSIPUG00000008950)
Characiphysae_b	ANCESTRAL SPECIES	61	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT01060000248708.b	ENSGT00940000154947.k	ENSGT00940000157471.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc.b	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b	ENSGT00950000183212.C.c.a	ENSGT00940000165795	ENSGT00940000158021.c	ENSGT00390000008892	ENSGT00940000159919.b	ENSGT00940000166681	ENSGT00390000010118.c.b	ENSGT00950000182971.B.b	ENSGT00940000156524.a #7	ENSGT00940000164368.A	ENSGT00390000018324	ENSGT00390000003453.b.b	ENSGT00950000183065.B.f
Characoidei	ANCESTRAL SPECIES	82	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT01060000248708.b	ENSGT00940000154947.k	ENSGT00940000157471.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc.b	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00950000182891.b.b.b.b.a.b	ENSGT00940000164921.b	ENSGT00950000183212.C.c.a	ENSGT00940000165795	ENSGT00940000158021.c	ENSGT00390000008892	ENSGT00940000159919.b	ENSGT00940000166681	ENSGT00390000010118.c.b	ENSGT00990000204073.a	ENSGT01060000249203.A	ENSGT00950000182971.B.b	ENSGT00940000156524.a #7	ENSGT00940000164368.A
Red-bellied piranha	MODERN SPECIES	251	ENSPNAG00000016594	ndufv1 (ENSPNAG00000016658)	ENSPNAG00000016712	si:ch211-81a5.8 (ENSPNAG00000016739)	clk2a (ENSPNAG00000016768)	setdb1a (ENSPNAG00000003444)	lrrc71 (ENSPNAG00000016823)	ash1l (ENSPNAG00000016981)	ENSPNAG00000003460	scamp3 (ENSPNAG00000003461)	crabp2b (ENSPNAG00000017056)	mrps21 (ENSPNAG00000017115)	ENSPNAG00000017143 #29	rprd2a (ENSPNAG00000017205)	celf3a (ENSPNAG00000017276)	cers2a (ENSPNAG00000017316) #22	rps27.1 (ENSPNAG00000017336)	chrna11 (ENSPNAG00000017403)	snx27a (ENSPNAG00000017445)	s100a10a (ENSPNAG00000017454)	trim46b (ENSPNAG00000017549)	dpm3 (ENSPNAG00000017579)	efna1a (ENSPNAG00000017599)	ENSPNAG00000004701	si:dkey-266f7.9 (ENSPNAG00000017648)	ENSPNAG00000017658
Mexicana tetra	MODERN SPECIES	15	ENSAMXG00000036542	ENSAMXG00000039788	si:ch211-81a5.8 (ENSAMXG00000010045)	clk2a (ENSAMXG00000010041)	setdb1a (ENSAMXG00000010030)	lrrc71 (ENSAMXG00000031291)	ash1l (ENSAMXG00000009994)	ENSAMXG00000042305	scamp3 (ENSAMXG00000032081)	crabp2b (ENSAMXG00000032195)	mrps21 (ENSAMXG00000032876)	ciarta (ENSAMXG00000035450)	rprd2a (ENSAMXG00000042601)	ENSAMXG00000036838	celf3a (ENSAMXG00000009926)	cers2a (ENSAMXG00000009905) #22	ENSAMXG00000001908	ENSAMXG00000033744	chrna11 (ENSAMXG00000009834)	snx27a (ENSAMXG00000009816)	s100a10a (ENSAMXG00000009806)	trim46b (ENSAMXG00000009789)	dpm3 (ENSAMXG00000025548)	efna1a (ENSAMXG00000009770)	JUP (ENSAMXG00000005521)	eif1 (ENSAMXG00000031547)	krt91 (ENSAMXG00000001164)	ENSAMXG00000031543	ENSAMXG00000040136	krtt1c19e (ENSAMXG00000029377)	ENSAMXG00000001155
Electric eel	MODERN SPECIES	59	ENSEEEG00000007706	IFFO1 (ENSEEEG00000007691)	vamp1a (ENSEEEG00000007690)	ndufv1 (ENSEEEG00000007653)	ENSEEEG00000007649	clk2a (ENSEEEG00000006851)	ENSEEEG00000006829	setdb1a (ENSEEEG00000006828)	lrrc71 (ENSEEEG00000006827)	ENSEEEG00000006823	scamp3 (ENSEEEG00000006822)	crabp2b (ENSEEEG00000006804)	mrps21 (ENSEEEG00000006801)	rprd2a (ENSEEEG00000006790)	celf3a (ENSEEEG00000006785)	cers2a (ENSEEEG00000006778) #22	ENSEEEG00000006713	chrna11 (ENSEEEG00000006704)	snx27a (ENSEEEG00000006678)	s100a10a (ENSEEEG00000006673)	trim46b (ENSEEEG00000006649)	dpm3 (ENSEEEG00000006645)	efna1a (ENSEEEG00000006642)	ENSEEEG00000006640	si:dkey-266f7.9 (ENSEEEG00000006638)	ENSEEEG00000006637	cks1b (ENSEEEG00000006634)	znf687b (ENSEEEG00000006632) #7	aqp10b (ENSEEEG00000006631)	ENSEEEG00000006561	hax1 (ENSEEEG00000006556)
Cyprinoidei	ANCESTRAL SPECIES	33	ENSGT00940000163756.c.a	ENSGT00390000010641.i.b	ENSGT00940000154743.A.a.b	ENSGT01060000248708.b	ENSGT00940000154947.k	ENSGT00940000157471.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b	ENSGT00950000183212.C.c.a	ENSGT00940000165795	ENSGT00940000158021.c	ENSGT00390000008892	ENSGT00940000159919.b	ENSGT00940000166681	ENSGT00390000010118.c.b	ENSGT01060000249203.A	ENSGT00950000182971.B.b	ENSGT00940000156524.a #7	ENSGT00940000164368.A	ENSGT00390000018324	ENSGT00390000003453.b.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	307	ENSGT00940000154743.A.a.b.a	ENSGT01060000248708.b.a	ENSGT00940000154947.k.e	ENSGT00940000157471.b.d	ENSGT00440000034367.a.a	ENSGT00940000156698.c.a	ENSGT00940000157203.d.b	ENSGT00940000160917.o	ENSGT00940000157619.a.b.a.b	ENSGT00940000166610.f	ENSGT00940000157619.a.b.b	ENSGT00940000166610.e.a	ENSGT00390000018360.b.a	ENSGT00950000183094.a.n.a	ENSGT00940000154716.gc.b.a	ENSGT01030000234515.a.b.a.a.e.a #22	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000164921.b.f	ENSGT00950000183212.C.c.a.a	ENSGT00940000165795.g.a	ENSGT00940000158021.c.c	ENSGT00390000008892.a.a
Goldfish	MODERN SPECIES	10	NCDN (ENSCARG00000016735)	ENSCARG00000016612	ndufv1 (ENSCARG00000016127)	ENSCARG00000016073	si:ch211-81a5.8 (ENSCARG00000016067)	clk2a (ENSCARG00000016064)	setdb1a (ENSCARG00000016001)	lrrc71 (ENSCARG00000015977)	ash1l (ENSCARG00000014568)	scamp3 (ENSCARG00000014519)	crabp2b (ENSCARG00000014510)	mrps21 (ENSCARG00000014502)	ciarta (ENSCARG00000014494)	rprd2a (ENSCARG00000014486)	celf3a (ENSCARG00000014451)	cers2a (ENSCARG00000014414) #22	ENSCARG00000016663	chrna11 (ENSCARG00000016660)	snx27a (ENSCARG00000016563)	s100a10a (ENSCARG00000016534)	trim46b (ENSCARG00000016523)	dpm3 (ENSCARG00000016515)	efna1a (ENSCARG00000016502)	ENSCARG00000016495	ENSCARG00000016478	si:dkey-266f7.5 (ENSCARG00000016461)	ENSCARG00000016452	cks1b (ENSCARG00000016433)	znf687b (ENSCARG00000016411) #7	aqp10b (ENSCARG00000016382)	hax1 (ENSCARG00000016365)
Cyprininae_a	ANCESTRAL SPECIES	52	ENSGT00390000010641.i.b.a	ENSGT00940000154743.A.a.b.a	ENSGT01060000248708.b.a	ENSGT00940000154947.k.e	ENSGT00940000157471.b.d	ENSGT00440000034367.a.a	ENSGT00940000156698.c.a	ENSGT00940000157203.d.b	ENSGT00940000160917.o	ENSGT00940000157619.a.b.a.b	ENSGT00940000166610.f	ENSGT00940000166610.e.a	ENSGT00390000018360.b.a	ENSGT00950000183094.a.n.a	ENSGT00940000154716.gc.b.a	ENSGT01030000234515.a.b.a.a.e.a #22	ENSGT00950000182891.b.b.b.b.a	ENSGT00940000164921.b.f	ENSGT00950000183212.C.c.a.a	ENSGT00940000165795.g.a	ENSGT00940000158021.c.c	ENSGT00390000008892.a.a	ENSGT00390000008892.b	ENSGT00940000159919.b.a.a	ENSGT00940000166681.b	ENSGT00390000010118.c.b.c	ENSGT00950000182971.B.b.s	ENSGT00940000156524.a.d #7	ENSGT00940000164368.A	ENSGT00390000018324.a	ENSGT00390000018324.b
Common carp reference	MODERN SPECIES	12	ndufv1 (ENSCCRG00000017955)	ENSCCRG00000071140	si:ch211-81a5.8 (ENSCCRG00000057966)	clk2a (ENSCCRG00000053694)	setdb1a (ENSCCRG00000048984)	lrrc71 (ENSCCRG00000048989)	ash1l (ENSCCRG00000048996)	ENSCCRG00000062250	scamp3 (ENSCCRG00000060760)	crabp2b (ENSCCRG00000070701)	mrps21 (ENSCCRG00000067203)	ciarta (ENSCCRG00000049041)	rprd2a (ENSCCRG00000024017)	celf3a (ENSCCRG00000024042)	ENSCCRG00000060057	cers2a (ENSCCRG00000024592) #22	ENSCCRG00000075527	chrna11 (ENSCCRG00000056448)	snx27a (ENSCCRG00000035444)	s100a10a (ENSCCRG00000075828)	trim46b (ENSCCRG00000035422)	dpm3 (ENSCCRG00000065825)	ENSCCRG00000077525	si:dkey-266f7.9 (ENSCCRG00000081891)	ENSCCRG00000081131	ENSCCRG00000051815	cks1b (ENSCCRG00000051810)	znf687b (ENSCCRG00000053812) #7	aqp10b (ENSCCRG00000051805)	hax1 (ENSCCRG00000051803)	ubap2l (ENSCCRG00000007789)
Golden-line barbel	MODERN SPECIES	115	ENSSGRG00000054087	ENSSGRG00000054088	ndufv1 (ENSSGRG00000054097)	ENSSGRG00000054249	si:ch211-81a5.8 (ENSSGRG00000054250)	clk2a (ENSSGRG00000054252)	setdb1a (ENSSGRG00000054394)	lrrc71 (ENSSGRG00000054397)	ash1l (ENSSGRG00000054398)	scamp3 (ENSSGRG00000054400)	crabp2b (ENSSGRG00000054401)	mrps21 (ENSSGRG00000054402)	ciarta (ENSSGRG00000054403)	rprd2a (ENSSGRG00000054404)	celf3a (ENSSGRG00000054406)	cers2a (ENSSGRG00000054438) #22	rps27.1 (ENSSGRG00000054449)	chrna11 (ENSSGRG00000054457)	snx27a (ENSSGRG00000054467)	s100a10a (ENSSGRG00000054538)	ENSSGRG00000054539	trim46b (ENSSGRG00000054540)	dpm3 (ENSSGRG00000054543)	efna1a (ENSSGRG00000054544)	ENSSGRG00000054545	si:dkey-266f7.9 (ENSSGRG00000054548)	cks1b (ENSSGRG00000054553)	znf687b (ENSSGRG00000054556) #7	aqp10b (ENSSGRG00000054558)	hax1 (ENSSGRG00000054559)	hax1 (ENSSGRG00000054561)
Cyprininae	ANCESTRAL SPECIES	185	ENSGT00940000163756.c.a.h	ENSGT00390000010641.i.b.b	ENSGT00940000154743.A.a.b.b	ENSGT01060000248708.b.b	ENSGT00940000154947.k.f	ENSGT00940000157471.b.c	ENSGT00440000034367.a.b	ENSGT00940000156698.c.b	ENSGT00940000157203.d.a	ENSGT00940000160917.p	ENSGT00940000157619.a.b.a.a	ENSGT00940000166610.e.b	ENSGT00390000018360.b.b	ENSGT00950000183094.a.n.b	ENSGT00940000154716.gc.b.b	ENSGT01030000234515.a.b.a.a.e.b #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b.e	ENSGT00950000183212.C.c.a.b	ENSGT00940000165795.g.b	ENSGT00940000158021.c.d	ENSGT00390000008892.a.b	ENSGT00940000159919.b.b	ENSGT00940000166681.a	ENSGT00390000010118.c.b.d	ENSGT00990000214102	ENSGT01060000249203.A	ENSGT00390000007091.ab.a.a.a.a	ENSGT00390000008892.b	ENSGT00940000159919.b.a.a	ENSGT00940000166681.b
Cyprininae_a	ANCESTRAL SPECIES	1	ENSGT00940000163756.c.a.h	ENSGT00390000010641.i.b.b	ENSGT00940000154743.A.a.b.b	ENSGT01060000248708.b.b	ENSGT00940000154947.k.f	ENSGT00940000157471.b.c	ENSGT00940000156698.c.b	ENSGT00940000157203.d.a	ENSGT00940000160917.p	ENSGT00940000157619.a.b.a.a	ENSGT00940000157619.a.b.b	ENSGT00940000166610.e.b	ENSGT00390000018360.b.b	ENSGT00950000183094.a.n.b	ENSGT00940000154716.gc.b.b	ENSGT01030000234515.a.b.a.a.e.b #22	ENSGT00950000182891.b.b.a	ENSGT00940000164921.b.e	ENSGT00950000183212.C.c.a.b	ENSGT00940000165795.g.b	ENSGT00940000158021.c.d	ENSGT00390000008892.a.b	ENSGT00940000159919.b.b	ENSGT00940000166681.a	ENSGT00390000010118.c.b.d	ENSGT00990000214102	ENSGT01060000249203.A.a	ENSGT00950000182971.B.b.r	ENSGT00940000156524.a.c #7
Common carp reference	MODERN SPECIES	31	ENSCCRG00000048530	ENSCCRG00000048531	ENSCCRG00000048536	ndufv1 (ENSCCRG00000081798)	ENSCCRG00000076116	si:ch211-81a5.8 (ENSCCRG00000048562)	clk2a (ENSCCRG00000048580)	setdb1a (ENSCCRG00000049021)	ash1l (ENSCCRG00000076046)	ENSCCRG00000007470	scamp3 (ENSCCRG00000049033)	crabp2b (ENSCCRG00000048557)	mrps21 (ENSCCRG00000080584)	rprd2a (ENSCCRG00000068133)	celf3a (ENSCCRG00000076770)	cers2a (ENSCCRG00000072257) #22	ENSCCRG00000074680	chrna11 (ENSCCRG00000006710)	snx27a (ENSCCRG00000042297)	s100a10a (ENSCCRG00000069788)	trim46b (ENSCCRG00000042143)	dpm3 (ENSCCRG00000068446)	efna1a (ENSCCRG00000017809)	ENSCCRG00000059719	si:dkey-266f7.9 (ENSCCRG00000067905)	ENSCCRG00000066838	ENSCCRG00000066586	ENSCCRG00000009876	cks1b (ENSCCRG00000063929)	znf687b (ENSCCRG00000007948) #7	hax1 (ENSCCRG00000007950)
Golden-line barbel	MODERN SPECIES	267	ENSSGRG00000031855	ENSSGRG00000031854	ENSSGRG00000031849	ndufv1 (ENSSGRG00000031847)	ENSSGRG00000031846	si:ch211-81a5.8 (ENSSGRG00000031845)	clk2a (ENSSGRG00000030848)	setdb1a (ENSSGRG00000030842)	ash1l (ENSSGRG00000030817)	scamp3 (ENSSGRG00000030813)	crabp2b (ENSSGRG00000030810)	mrps21 (ENSSGRG00000030808)	ciarta (ENSSGRG00000030807)	rprd2a (ENSSGRG00000030806)	celf3a (ENSSGRG00000030554)	cers2a (ENSSGRG00000030503) #22	ENSSGRG00000030475	chrna11 (ENSSGRG00000030472)	snx27a (ENSSGRG00000030135)	trim46b (ENSSGRG00000030082)	ENSSGRG00000030081	ENSSGRG00000030078	si:dkey-266f7.5 (ENSSGRG00000030076)	cks1b (ENSSGRG00000030073)	znf687b (ENSSGRG00000030067) #7	aqp10b (ENSSGRG00000030030)	hax1 (ENSSGRG00000030027)	ubap2l (ENSSGRG00000029931)
Goldfish	MODERN SPECIES	38	nutf2l (ENSCARG00000022510)	adnp2b (ENSCARG00000022506)	txnl4a (ENSCARG00000022496)	cndp2 (ENSCARG00000022040)	tshz1 (ENSCARG00000022016)	znf516 (ENSCARG00000022006)	ENSCARG00000022000	ext1b (ENSCARG00000021952)	med30 (ENSCARG00000021936)	SLC30A8 (ENSCARG00000021920)	crabp2b (ENSCARG00000021900)	mrps21 (ENSCARG00000021888)	ciarta (ENSCARG00000021868)	rprd2a (ENSCARG00000021836)	celf3a (ENSCARG00000021768)	cers2a (ENSCARG00000021724) #22	ENSCARG00000021695	chrna11 (ENSCARG00000021663)	snx27a (ENSCARG00000020384)	s100a10a (ENSCARG00000020334)	trim46b (ENSCARG00000020296)	dpm3 (ENSCARG00000020285)	efna1a (ENSCARG00000020272)	ENSCARG00000020265	ENSCARG00000020259	si:dkey-266f7.9 (ENSCARG00000020256)	ENSCARG00000020229	cks1b (ENSCARG00000020192)	znf687b (ENSCARG00000020179) #7	hax1 (ENSCARG00000020136)	ubap2l (ENSCARG00000020007)
Zebrafish	MODERN SPECIES	10	ndufv1 (ENSDARG00000036438)	ENSDARG00000027192	si:ch211-81a5.8 (ENSDARG00000070972)	clk2a (ENSDARG00000062954)	setdb1a (ENSDARG00000041243)	lrrc71 (ENSDARG00000036412)	ash1l (ENSDARG00000070981)	ENSDARG00000062900	scamp3 (ENSDARG00000016765)	crabp2b (ENSDARG00000030449)	mrps21 (ENSDARG00000070985)	ciarta (ENSDARG00000058094)	rprd2a (ENSDARG00000058089)	celf3a (ENSDARG00000034668)	ENSDARG00000103224	cers2a (ENSDARG00000013704) #22	rps27.1 (ENSDARG00000023298)	chrna11 (ENSDARG00000037427)	snx27a (ENSDARG00000033804)	trim46b (ENSDARG00000058649)	dpm3 (ENSDARG00000058650)	s100a10a (ENSDARG00000037425)	efna1a (ENSDARG00000030326)	ENSDARG00000014675	si:dkey-266f7.9 (ENSDARG00000075958)	ENSDARG00000086613	si:dkey-266f7.5 (ENSDARG00000094886)	si:dkey-266f7.4 (ENSDARG00000092728)	nuggc.3 (ENSDARG00000058672)	nuggc.2 (ENSDARG00000091951)	ENSDARG00000092878
Euteleosteomorpha	ANCESTRAL SPECIES	40	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00940000164936.a #29	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00530000063023.B	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Acanthomorphata	ANCESTRAL SPECIES	22	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00940000164936.a #29	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000167191	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000167191	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.hc	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000167191	ENSGT00940000157432.A	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973.b	ENSGT00940000178110	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Aplocheiloidei	ANCESTRAL SPECIES	9	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a	ENSGT00950000183130.C
Turquoise killifish	MODERN SPECIES	1628	ATPIF1A (ENSNFUG00015017174)	hnrnpr (ENSNFUG00015017206)	ENSNFUG00015017293	DNAJC8 (ENSNFUG00015017303)	clk2a (ENSNFUG00015017431)	ENSNFUG00015019511	lrrc71 (ENSNFUG00015019525)	ash1l (ENSNFUG00015019553)	ENSNFUG00015019604	SCAMP3 (ENSNFUG00015019613)	CRABP2B (ENSNFUG00015019620)	mrps21 (ENSNFUG00015019622)	C19H1ORF51 (ENSNFUG00015019628)	RPRD2A (ENSNFUG00015019643)	celf3a (ENSNFUG00015019695)	cers2a (ENSNFUG00015019804) #22	ENSNFUG00015019823	ENSNFUG00015019877	Nfu_g_1_017837 (ENSNFUG00015019925)	SNX27A (ENSNFUG00015020015)	S100A2 (ENSNFUG00015020767)	ENSNFUG00015020771	trim46b (ENSNFUG00015020774)	dpm3 (ENSNFUG00015020781)	efna1a (ENSNFUG00015020784)	EFNA3A (ENSNFUG00015020786)	cks1b (ENSNFUG00015020789)	PTK2 (ENSNFUG00015020854)	ENSNFUG00015021639	DENND3 (ENSNFUG00015021646)	SLC45A4 (ENSNFUG00015021684)
Mangrove rivulus	MODERN SPECIES	2	s100a10a (ENSKMAG00000011450)	icn (ENSKMAG00000011467)	snx27a (ENSKMAG00000011486)	chrna11 (ENSKMAG00000011541)	ENSKMAG00000011606	ENSKMAG00000011647	lrrc71 (ENSKMAG00000011716)	ash1l (ENSKMAG00000011776)	ENSKMAG00000011862	scamp3 (ENSKMAG00000011904)	crabp2b (ENSKMAG00000011938)	mrps21 (ENSKMAG00000011957)	ciarta (ENSKMAG00000011969)	rprd2a (ENSKMAG00000011981)	celf3a (ENSKMAG00000011999)	cers2a (ENSKMAG00000012043) #22	clk2a (ENSKMAG00000012074)	hnrnpr (ENSKMAG00000012139)	ADGRB1 (ENSKMAG00000012221)	HERPUD2 (ENSKMAG00000012304)	SLC4A7 (ENSKMAG00000012350)	eomesa (ENSKMAG00000012496)	ENSKMAG00000012586	TGFBR2 (ENSKMAG00000012650)	STT3B (ENSKMAG00000012673)	OSBPL10 (ENSKMAG00000012717)	ENSKMAG00000012760	zdhhc3b (ENSKMAG00000012772)	exosc7 (ENSKMAG00000012799)	CLEC3B (ENSKMAG00000012838)	ENSKMAG00000012860
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
NAME_4	ANCESTRAL SPECIES	10	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973.b
Mummichog	MODERN SPECIES	2348	icn2 (ENSFHEG00000011845)	snx27a (ENSFHEG00000011889)	chrna11 (ENSFHEG00000011932)	ENSFHEG00000011989	ENSFHEG00000012201	ENSFHEG00000012228	ash1l (ENSFHEG00000012308)	ENSFHEG00000012370	scamp3 (ENSFHEG00000012403)	crabp2b (ENSFHEG00000012423)	mrps21 (ENSFHEG00000012430)	ciarta (ENSFHEG00000012441)	ENSFHEG00000012493	ENSFHEG00000012503	celf3a (ENSFHEG00000012530)	cers2a (ENSFHEG00000012539) #22	clk2a (ENSFHEG00000012546)	dnajc8 (ENSFHEG00000012569)	hnrnpr (ENSFHEG00000012603)	ENSFHEG00000012618	ADGRB1 (ENSFHEG00000012665)	ENSFHEG00000012679
Sheepshead minnow	MODERN SPECIES	203	s100a10a (ENSCVAG00000017616)	icn (ENSCVAG00000017622)	snx27a (ENSCVAG00000017700)	chrna11 (ENSCVAG00000017748)	ENSCVAG00000017788	ENSCVAG00000017817	lrrc71 (ENSCVAG00000017850)	ash1l (ENSCVAG00000017872)	ENSCVAG00000017930	scamp3 (ENSCVAG00000017946)	crabp2b (ENSCVAG00000017975)	mrps21 (ENSCVAG00000017982)	ciarta (ENSCVAG00000017992)	rprd2a (ENSCVAG00000018006)	celf3a (ENSCVAG00000018056)	cers2a (ENSCVAG00000018116) #22	clk2a (ENSCVAG00000018175)	ENSCVAG00000018184	dnajc8 (ENSCVAG00000018231)	hnrnpr (ENSCVAG00000018246)	hnrnpr (ENSCVAG00000018291)	ENSCVAG00000018316	ADGRB1 (ENSCVAG00000018336)	THBS1 (ENSCVAG00000018367)	acp7 (ENSCVAG00000018392)	ENSCVAG00000018408	zgc:194887 (ENSCVAG00000000482)	chrm5a (ENSCVAG00000018420)	RYR3 (ENSCVAG00000018768)	FMN1 (ENSCVAG00000018811)	GREM1 (ENSCVAG00000000984)
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Poecilia	ANCESTRAL SPECIES	55	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT00980000200353	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
NAME_6	ANCESTRAL SPECIES	128	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00940000173967	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT00980000200353	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Sailfin molly	MODERN SPECIES	1244														celf3a (ENSPLAG00000008490)	ENSPLAG00000008509	CERS2 (ENSPLAG00000008538) #22	clk2a (ENSPLAG00000008556)	ENSPLAG00000008565	dnajc8 (ENSPLAG00000008626)	hnrnpr (ENSPLAG00000008657)	ENSPLAG00000008673	ADGRB1 (ENSPLAG00000008738)
Amazon molly	MODERN SPECIES	377	ENSPFOG00000009404	icn2 (ENSPFOG00000009398)	SNX27 (ENSPFOG00000009276)	chrna11 (ENSPFOG00000009080)	ENSPFOG00000009016	ENSPFOG00000009008	ENSPFOG00000023082	ash1l (ENSPFOG00000008852)	ENSPFOG00000008821	scamp3 (ENSPFOG00000008731)	crabp2b (ENSPFOG00000008725)	mrps21 (ENSPFOG00000008722)	ciarta (ENSPFOG00000008690)	rprd2a (ENSPFOG00000008634)	celf3a (ENSPFOG00000008507)	cers2a (ENSPFOG00000008203) #22	ENSPFOG00000008178	ENSPFOG00000008168	clk2a (ENSPFOG00000008036)	dnajc8 (ENSPFOG00000007962)	hnrnpr (ENSPFOG00000007881)	ENSPFOG00000007873	ADGRB1 (ENSPFOG00000007532)	HERPUD2 (ENSPFOG00000007443)	SLC4A7 (ENSPFOG00000006666)	ENSPFOG00000006512	eomesa (ENSPFOG00000006471)	ENSPFOG00000006155	TGFBR2 (ENSPFOG00000006043)	STT3B (ENSPFOG00000005669)	OSBPL10 (ENSPFOG00000005451)
Guppy	MODERN SPECIES	441	icn2 (ENSPREG00000019482)	SNX27 (ENSPREG00000019441)	chrna11 (ENSPREG00000019402)	ENSPREG00000019339	ENSPREG00000019180	lrrc71 (ENSPREG00000019135)	ash1l (ENSPREG00000019101)	ENSPREG00000019064	scamp3 (ENSPREG00000019041)	crabp2b (ENSPREG00000019026)	mrps21 (ENSPREG00000019017)	ciarta (ENSPREG00000018998)	rprd2a (ENSPREG00000018979)	celf3a (ENSPREG00000018923)	ENSPREG00000018888	cers2a (ENSPREG00000018868) #22	ENSPREG00000018849	clk2a (ENSPREG00000018819)	ENSPREG00000018798	dnajc8 (ENSPREG00000018781)	hnrnpr (ENSPREG00000018754)	ENSPREG00000018645	ADGRB1 (ENSPREG00000018569)	ENSPREG00000018530	SLC4A7 (ENSPREG00000018341)	eomesa (ENSPREG00000018274)	capn1b (ENSPREG00000018261)	ENSPREG00000018221	TGFBR2 (ENSPREG00000018144)	STT3B (ENSPREG00000018103)	OSBPL10 (ENSPREG00000018057)
Platyfish	MODERN SPECIES	4	s100a10a (ENSXMAG00000014763)	icn2 (ENSXMAG00000028927)	snx27a (ENSXMAG00000014739)	chrna11 (ENSXMAG00000014725)	ENSXMAG00000014698	ENSXMAG00000014681	lrrc71 (ENSXMAG00000014679)	ash1l (ENSXMAG00000014673)	ENSXMAG00000014665	scamp3 (ENSXMAG00000021817)	crabp2b (ENSXMAG00000014642)	mrps21 (ENSXMAG00000029139)	ciarta (ENSXMAG00000022811)	rprd2a (ENSXMAG00000014636)	celf3a (ENSXMAG00000014619)	cers2a (ENSXMAG00000014591) #22	ENSXMAG00000026806	clk2a (ENSXMAG00000014567)	dnajc8 (ENSXMAG00000027978)	ENSXMAG00000020983	hnrnpr (ENSXMAG00000014480)	ENSXMAG00000020284	ADGRB1 (ENSXMAG00000014448)	HERPUD2 (ENSXMAG00000027325)	SLC4A7 (ENSXMAG00000014387)	eomesa (ENSXMAG00000000528)	ENSXMAG00000014382	TGFBR2 (ENSXMAG00000014367)	STT3B (ENSXMAG00000014350)	OSBPL10 (ENSXMAG00000014319)	TMEM42 (ENSXMAG00000029709)
Oryzias	ANCESTRAL SPECIES	24	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00940000155363.w	ENSGT00940000156698.c	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Oryzias_b	ANCESTRAL SPECIES	31	ENSGT00940000159919.b	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00940000156698.c	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Indian medaka	MODERN SPECIES	29	dpm3 (ENSOMEG00000006423)	trim46b (ENSOMEG00000006470)	s100a10a (ENSOMEG00000006493)	ENSOMEG00000006523	SNX27 (ENSOMEG00000000967)	chrna11 (ENSOMEG00000006641)	ENSOMEG00000006680	ENSOMEG00000006790	ash1l (ENSOMEG00000006866)	scamp3 (ENSOMEG00000006917)	crabp2b (ENSOMEG00000006936)	mrps21 (ENSOMEG00000006950)	ciarta (ENSOMEG00000006971)	ENSOMEG00000006989	celf3a (ENSOMEG00000007034)	cers2a (ENSOMEG00000007068) #22	clk2a (ENSOMEG00000007087)	dnajc8 (ENSOMEG00000007183)	hnrnpr (ENSOMEG00000007244)	ENSOMEG00000007260	ADGRB1 (ENSOMEG00000007353)	HERPUD2 (ENSOMEG00000007394)	SLC4A7 (ENSOMEG00000007492)	eomesa (ENSOMEG00000007578)	ENSOMEG00000007677	TGFBR2 (ENSOMEG00000007761)	STT3B (ENSOMEG00000007815)	OSBPL10 (ENSOMEG00000007872)	TMEM42 (ENSOMEG00000007890)	zdhhc3b (ENSOMEG00000007926)	exosc7 (ENSOMEG00000007979)
Javanese ricefish	MODERN SPECIES	2	efna1a (ENSOJAG00000006214)	dpm3 (ENSOJAG00000006206)	trim46b (ENSOJAG00000006183)	s100a10a (ENSOJAG00000006161)	ENSOJAG00000006150	snx27a (ENSOJAG00000006063)	chrna11 (ENSOJAG00000005893)	ENSOJAG00000005839	ENSOJAG00000005712	scamp3 (ENSOJAG00000005589)	crabp2b (ENSOJAG00000005576)	mrps21 (ENSOJAG00000005561)	ENSOJAG00000005553 #29	rprd2a (ENSOJAG00000005539)	celf3a (ENSOJAG00000005094)	cers2a (ENSOJAG00000004995) #22	clk2a (ENSOJAG00000004281)	ENSOJAG00000004192	hnrnpr (ENSOJAG00000004117)	ENSOJAG00000004095	HERPUD2 (ENSOJAG00000003587)	eomesa (ENSOJAG00000003461)	ENSOJAG00000003370	TGFBR2 (ENSOJAG00000003329)	STT3B (ENSOJAG00000003277)	OSBPL10 (ENSOJAG00000003241)	ENSOJAG00000003236	zdhhc3b (ENSOJAG00000003224)	ENSOJAG00000003221	exosc7 (ENSOJAG00000003210)	ENSOJAG00000003184
Oryzias_a	ANCESTRAL SPECIES	42									ENSGT00940000164936.a #29	ENSGT00940000177218	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Japanese Medaka HdrR	MODERN SPECIES	2	ENSORLG00000025799	ENSORLG00000029577	ENSORLG00000002680	ENSORLG00000023210	ENSORLG00000025715	ENSORLG00000024954	ENSORLG00000002703	ENSORLG00000029366	ENSORLG00000002697	crabp2b (ENSORLG00000025844)	mrps21 (ENSORLG00000028898)	ciarta (ENSORLG00000002650)	rprd2a (ENSORLG00000002642)	celf3a (ENSORLG00000002630)	ENSORLG00000026515	cers2a (ENSORLG00000002602) #22	clk2a (ENSORLG00000002563)	ENSORLG00000023686	dnajc8 (ENSORLG00000002534)	hnrnpr (ENSORLG00000002515)	ENSORLG00000027209	ADGRB1 (ENSORLG00000002495)	ENSORLG00000022589	ENSORLG00000028717	ENSORLG00000022871	ENSORLG00000002385	eomesa (ENSORLG00000002320)	ENSORLG00000023596	ENSORLG00000002306	TGFBR2 (ENSORLG00000028362)	STT3B (ENSORLG00000002300)
Chinese medaka	MODERN SPECIES	667												ENSOSIG00000003792 #29	ENSOSIG00000003800	ENSOSIG00000003806	celf3a (ENSOSIG00000003829)	CERS2 (ENSOSIG00000003846) #22	clk2a (ENSOSIG00000003969)	dnajc8 (ENSOSIG00000006995)	hnrnpr (ENSOSIG00000007215)	ENSOSIG00000007221	ADGRB1 (ENSOSIG00000007226)	HERPUD2 (ENSOSIG00000008699)	SLC4A7 (ENSOSIG00000008729)	eomesa (ENSOSIG00000018165)	ENSOSIG00000018170	ENSOSIG00000018177	TGFBR2 (ENSOSIG00000018179)	STT3B (ENSOSIG00000018197)	OSBPL10 (ENSOSIG00000018206)	TMEM42 (ENSOSIG00000018210)	zdhhc3b (ENSOSIG00000018215)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Pomacentridae_A	ANCESTRAL SPECIES	37	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Amphiprion	ANCESTRAL SPECIES	91	ENSGT00940000165795.d	ENSGT00940000162871.i	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k
Clown anemonefish	MODERN SPECIES	2802															celf3a (ENSAOCG00000020552)	cers2a (ENSAOCG00000020494) #22	clk2a (ENSAOCG00000020439)
Orange clownfish	MODERN SPECIES	8	ENSAPEG00000009175	ciarta (ENSAPEG00000009095)	mrps21 (ENSAPEG00000009088)	crabp2b (ENSAPEG00000009060)	scamp3 (ENSAPEG00000009017)	ENSAPEG00000008994	ENSAPEG00000008974	ash1l (ENSAPEG00000008936)	ENSAPEG00000008910	scamp3 (ENSAPEG00000008897)	crabp2b (ENSAPEG00000008837)	mrps21 (ENSAPEG00000008831)	ciarta (ENSAPEG00000008798)	rprd2a (ENSAPEG00000008782)	celf3a (ENSAPEG00000008728)	cers2a (ENSAPEG00000008672) #22	clk2a (ENSAPEG00000008626)	ENSAPEG00000008592	chrna11 (ENSAPEG00000008561)	snx27a (ENSAPEG00000008493)	ENSAPEG00000008482	s100a10a (ENSAPEG00000008476)	ENSAPEG00000008465	trim46b (ENSAPEG00000008418)	dpm3 (ENSAPEG00000008384)	efna1a (ENSAPEG00000008353)	ENSAPEG00000008329	cks1b (ENSAPEG00000008300)	ENSAPEG00000008283	ENSAPEG00000008275	s100u (ENSAPEG00000008267)
Spiny chromis	MODERN SPECIES	392	s100a10a (ENSAPOG00000005537)	icn (ENSAPOG00000005546)	snx27a (ENSAPOG00000005588)	chrna11 (ENSAPOG00000005631)	ENSAPOG00000005636	ENSAPOG00000005670	lrrc71 (ENSAPOG00000005692)	ash1l (ENSAPOG00000005745)	ENSAPOG00000005830	scamp3 (ENSAPOG00000005851)	crabp2b (ENSAPOG00000005873)	mrps21 (ENSAPOG00000005886)	ciarta (ENSAPOG00000001032)	rprd2a (ENSAPOG00000005936)	celf3a (ENSAPOG00000006015)	cers2a (ENSAPOG00000000162) #22	clk2a (ENSAPOG00000006118)	ENSAPOG00000006141	dnajc8 (ENSAPOG00000000170)	hnrnpr (ENSAPOG00000006236)	ENSAPOG00000006386	ADGRB1 (ENSAPOG00000006630)	HERPUD2 (ENSAPOG00000006655)	SLC4A7 (ENSAPOG00000006779)
Bicolor damselfish	MODERN SPECIES	242	s100a10a (ENSSPAG00000002605)	ENSSPAG00000002612	snx27a (ENSSPAG00000002624)	chrna11 (ENSSPAG00000002685)	ENSSPAG00000002752	ENSSPAG00000003305	lrrc71 (ENSSPAG00000003318)	ash1l (ENSSPAG00000003361)	RNF115 (ENSSPAG00000003481)	scamp3 (ENSSPAG00000003521)	crabp2b (ENSSPAG00000003533)	mrps21 (ENSSPAG00000003551)	ciarta (ENSSPAG00000003560)	rprd2a (ENSSPAG00000003596)	celf3a (ENSSPAG00000003615)	cers2a (ENSSPAG00000003653) #22	clk2a (ENSSPAG00000003707)	ENSSPAG00000003731	dnajc8 (ENSSPAG00000003762)	hnrnpr (ENSSPAG00000003788)	ENSSPAG00000003800	ADGRB1 (ENSSPAG00000003823)	HERPUD2 (ENSSPAG00000003878)	SLC4A7 (ENSSPAG00000003896)	eomesa (ENSSPAG00000003953)	ENSSPAG00000003983	TGFBR2 (ENSSPAG00000004106)	STT3B (ENSSPAG00000004127)	OSBPL10 (ENSSPAG00000004193)	TMEM42 (ENSSPAG00000004238)	zdhhc3b (ENSSPAG00000004246)
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
P. nyererei	MODERN SPECIES	397	ENSPNYG00000010893	ENSPNYG00000010908	snx27a (ENSPNYG00000011002)	chrna11 (ENSPNYG00000011046)	ENSPNYG00000011109	ENSPNYG00000011291	lrrc71 (ENSPNYG00000011319)	ash1l (ENSPNYG00000011349)	ENSPNYG00000011388	scamp3 (ENSPNYG00000011437)	crabp2b (ENSPNYG00000011450)	mrps21 (ENSPNYG00000011464)	ciarta (ENSPNYG00000011473)	rprd2a (ENSPNYG00000011501)	celf3a (ENSPNYG00000011518)	cers2a (ENSPNYG00000011548) #22	clk2a (ENSPNYG00000011683)	ENSPNYG00000012049	dnajc8 (ENSPNYG00000012076)	hnrnpr (ENSPNYG00000012138)	ENSPNYG00000012202	ADGRB1 (ENSPNYG00000012249)	HERPUD2 (ENSPNYG00000012415)	SLC4A7 (ENSPNYG00000012457)	eomesa (ENSPNYG00000012522)	ENSPNYG00000012624	TGFBR2 (ENSPNYG00000012753)	STT3B (ENSPNYG00000012804)	OSBPL10 (ENSPNYG00000012850)
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00940000158021.c	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT01030000234973	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Eastern happy	MODERN SPECIES	13	ENSACLG00000009942	ENSACLG00000009936	snx27a (ENSACLG00000009901)	ENSACLG00000009864	chrna11 (ENSACLG00000009856)	ENSACLG00000009839	ENSACLG00000009727	ash1l (ENSACLG00000009699)	ENSACLG00000009685	scamp3 (ENSACLG00000009677)	crabp2b (ENSACLG00000009662)	mrps21 (ENSACLG00000009659)	ciarta (ENSACLG00000009644)	ENSACLG00000009641	celf3a (ENSACLG00000009631)	cers2a (ENSACLG00000009603) #22	clk2a (ENSACLG00000009581)	ENSACLG00000009563	ENSACLG00000009541	ENSACLG00000009533	hnrnpr (ENSACLG00000009513)	ENSACLG00000009509	ADGRB1 (ENSACLG00000009396)	HERPUD2 (ENSACLG00000009278)	SLC4A7 (ENSACLG00000009040)	eomesa (ENSACLG00000009016)	ENSACLG00000008976	TGFBR2 (ENSACLG00000007617)	STT3B (ENSACLG00000007532)	OSBPL10 (ENSACLG00000007487)	TMEM42 (ENSACLG00000007471)
Zebra mbuna	MODERN SPECIES	1104	s100a10a (ENSMZEG00005026541)	ENSMZEG00005026540	ENSMZEG00005026538	snx27a (ENSMZEG00005026536)	chrna11 (ENSMZEG00005026530)	ENSMZEG00005026524	ENSMZEG00005026520	ash1l (ENSMZEG00005026516)	ENSMZEG00005026514	scamp3 (ENSMZEG00005026512)	crabp2b (ENSMZEG00005026511)	mrps21 (ENSMZEG00005026509)	ciarta (ENSMZEG00005026507)	rprd2a (ENSMZEG00005026505)	celf3a (ENSMZEG00005026501)	cers2a (ENSMZEG00005026498) #22	clk2a (ENSMZEG00005026495)	ENSMZEG00005026493	dnajc8 (ENSMZEG00005026491)	hnrnpr (ENSMZEG00005026489)	ENSMZEG00005026488	ADGRB1 (ENSMZEG00005026487)	ENSMZEG00005026485	HERPUD2 (ENSMZEG00005026483)	SLC4A7 (ENSMZEG00005026473)	eomesa (ENSMZEG00005026471)	ENSMZEG00005026469	TGFBR2 (ENSMZEG00005026464)	STT3B (ENSMZEG00005026463)	OSBPL10 (ENSMZEG00005026461)	TMEM42 (ENSMZEG00005026459)
Burton s mouthbrooder	MODERN SPECIES	357	ENSHBUG00000020643	ENSHBUG00000020641	snx27a (ENSHBUG00000000631)	chrna11 (ENSHBUG00000020580)	ENSHBUG00000020523	ENSHBUG00000020403	lrrc71 (ENSHBUG00000020371)	ash1l (ENSHBUG00000020326)	ENSHBUG00000000618	scamp3 (ENSHBUG00000000613)	crabp2b (ENSHBUG00000020191)	mrps21 (ENSHBUG00000020177)	ciarta (ENSHBUG00000020170)	rprd2a (ENSHBUG00000020156)	celf3a (ENSHBUG00000001061)	cers2a (ENSHBUG00000020099) #22	clk2a (ENSHBUG00000020081)	ENSHBUG00000020068	dnajc8 (ENSHBUG00000020035)	hnrnpr (ENSHBUG00000019998)	ENSHBUG00000019981	ADGRB1 (ENSHBUG00000019965)	HERPUD2 (ENSHBUG00000019940)	SLC4A7 (ENSHBUG00000019916)	eomesa (ENSHBUG00000019824)	ENSHBUG00000019785	TGFBR2 (ENSHBUG00000019725)	STT3B (ENSHBUG00000019707)	OSBPL10 (ENSHBUG00000019654)
Lyretail cichlid	MODERN SPECIES	302	ENSNBRG00000016749	snx27a (ENSNBRG00000016773)	chrna11 (ENSNBRG00000016828)	ENSNBRG00000016931	ENSNBRG00000017009	lrrc71 (ENSNBRG00000017131)	ash1l (ENSNBRG00000017174)	ENSNBRG00000017283	scamp3 (ENSNBRG00000017335)	crabp2b (ENSNBRG00000017363)	mrps21 (ENSNBRG00000017499)	ciarta (ENSNBRG00000017511)	ENSNBRG00000017527	ENSNBRG00000017540	celf3a (ENSNBRG00000017554)	cers2a (ENSNBRG00000017582) #22	clk2a (ENSNBRG00000017651)	ENSNBRG00000017827	dnajc8 (ENSNBRG00000017850)	hnrnpr (ENSNBRG00000017879)	ENSNBRG00000017899	ENSNBRG00000017909	ENSNBRG00000017941	HERPUD2 (ENSNBRG00000017956)	SLC4A7 (ENSNBRG00000017977)	eomesa (ENSNBRG00000018035)	ENSNBRG00000018065	TGFBR2 (ENSNBRG00000018103)	STT3B (ENSNBRG00000018133)	OSBPL10 (ENSNBRG00000018170)	TMEM42 (ENSNBRG00000018206)
Nile tilapia	MODERN SPECIES	13	s100a10a (ENSONIG00000031982)	ENSONIG00000028947	ENSONIG00000038772	snx27a (ENSONIG00000019721)	chrna11 (ENSONIG00000019719)	ENSONIG00000019717	lrrc71 (ENSONIG00000028356)	ash1l (ENSONIG00000019716)	ENSONIG00000019713	scamp3 (ENSONIG00000019710)	crabp2b (ENSONIG00000019709)	mrps21 (ENSONIG00000031832)	ciarta (ENSONIG00000019706)	rprd2a (ENSONIG00000019704)	celf3a (ENSONIG00000019703)	cers2a (ENSONIG00000019701) #22	clk2a (ENSONIG00000019698)	ENSONIG00000036389	dnajc8 (ENSONIG00000019696)	hnrnpr (ENSONIG00000019692)	ENSONIG00000019691	ADGRB1 (ENSONIG00000019689)	ENSONIG00000032661	HERPUD2 (ENSONIG00000019688)	SLC4A7 (ENSONIG00000019680)	eomesa (ENSONIG00000019678)	ENSONIG00000019676	TGFBR2 (ENSONIG00000019673)	STT3B (ENSONIG00000019669)	OSBPL10 (ENSONIG00000019666)	TMEM42 (ENSONIG00000037844)
Midas cichlid	MODERN SPECIES	708				chrna11 (ENSACIG00000011268)	ENSACIG00000011189	ENSACIG00000011177	lrrc71 (ENSACIG00000011144)	ash1l (ENSACIG00000011095)	ENSACIG00000011069	scamp3 (ENSACIG00000011043)	crabp2b (ENSACIG00000011022)	mrps21 (ENSACIG00000011012)	ciarta (ENSACIG00000010998)	ENSACIG00000010965	celf3a (ENSACIG00000010932)	cers2a (ENSACIG00000010881) #22	clk2a (ENSACIG00000010767)	ENSACIG00000010745	ENSACIG00000010728	hnrnpr (ENSACIG00000010706)	ENSACIG00000010696	ADGRB1 (ENSACIG00000010640)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000167191	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Ballan wrasse	MODERN SPECIES	143	s100a10a (ENSLBEG00000026661)	icn (ENSLBEG00000026669)	snx27a (ENSLBEG00000026687)	chrna11 (ENSLBEG00000026728)	ENSLBEG00000026760	ENSLBEG00000026791	lrrc71 (ENSLBEG00000026819)	ash1l (ENSLBEG00000026843)	ENSLBEG00000026874	scamp3 (ENSLBEG00000026887)	crabp2b (ENSLBEG00000026897)	mrps21 (ENSLBEG00000026904)	ciarta (ENSLBEG00000026913)	ENSLBEG00000026924	celf3a (ENSLBEG00000026936)	cers2a (ENSLBEG00000026958) #22	ENSLBEG00000026986	clk2a (ENSLBEG00000026994)	ENSLBEG00000027008	dnajc8 (ENSLBEG00000027024)	hnrnpr (ENSLBEG00000027047)	ENSLBEG00000027073	ADGRB1 (ENSLBEG00000027108)	HERPUD2 (ENSLBEG00000027179)	SLC4A7 (ENSLBEG00000027234)	eomesa (ENSLBEG00000027350)	ENSLBEG00000027388	TGFBR2 (ENSLBEG00000027431)	ENSLBEG00000027456	STT3B (ENSLBEG00000027468)	OSBPL10 (ENSLBEG00000027489)
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Perciformes	ANCESTRAL SPECIES	11	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Pike perch	MODERN SPECIES	13	s100a10a (ENSSLUG00000012898)	icn2 (ENSSLUG00000012896)	snx27a (ENSSLUG00000012852)	chrna11 (ENSSLUG00000012824)	ENSSLUG00000012794	ENSSLUG00000012784	lrrc71 (ENSSLUG00000012776)	ash1l (ENSSLUG00000012622)	ENSSLUG00000012608	scamp3 (ENSSLUG00000012604)	crabp2b (ENSSLUG00000012599)	mrps21 (ENSSLUG00000012593)	ciarta (ENSSLUG00000012589)	ENSSLUG00000012582	celf3a (ENSSLUG00000012566)	cers2a (ENSSLUG00000012540) #22	clk2a (ENSSLUG00000011347)	ENSSLUG00000011294	dnajc8 (ENSSLUG00000011268)	hnrnpr (ENSSLUG00000011221)	ENSSLUG00000011206	ADGRB1 (ENSSLUG00000011168)	ENSSLUG00000011159	HERPUD2 (ENSSLUG00000011153)	SLC4A7 (ENSSLUG00000008177)	eomesa (ENSSLUG00000008046)	ENSSLUG00000007200	TGFBR2 (ENSSLUG00000007123)	STT3B (ENSSLUG00000006695)	OSBPL10 (ENSSLUG00000006640)	TMEM42 (ENSSLUG00000006634)
Channel bull blenny	MODERN SPECIES	2	icn (ENSCGOG00000014241)	SNX27 (ENSCGOG00000014175)	chrna11 (ENSCGOG00000014164)	ENSCGOG00000014140	ENSCGOG00000014127	lrrc71 (ENSCGOG00000014125)	ash1l (ENSCGOG00000014064)	ENSCGOG00000014048	scamp3 (ENSCGOG00000014033)	crabp2b (ENSCGOG00000014022)	mrps21 (ENSCGOG00000014020)	ciarta (ENSCGOG00000014018)	ENSCGOG00000014015	ENSCGOG00000014013	celf3a (ENSCGOG00000013635)	cers2a (ENSCGOG00000013441) #22	ENSCGOG00000013415	clk2a (ENSCGOG00000012582)	ENSCGOG00000012570	dnajc8 (ENSCGOG00000012271)	hnrnpr (ENSCGOG00000012155)	ENSCGOG00000012147	ADGRB1 (ENSCGOG00000011999)	HERPUD2 (ENSCGOG00000011984)	SLC4A7 (ENSCGOG00000010386)	eomesa (ENSCGOG00000010309)	ENSCGOG00000009311	TGFBR2 (ENSCGOG00000009280)	STT3B (ENSCGOG00000007617)	OSBPL10 (ENSCGOG00000007587)	TMEM42 (ENSCGOG00000007586)
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Lumpfish	MODERN SPECIES	2	ENSCLMG00005016682	icn (ENSCLMG00005016680)	snx27a (ENSCLMG00005016520)	chrna11 (ENSCLMG00005016514)	ENSCLMG00005016513	ENSCLMG00005016510	lrrc71 (ENSCLMG00005016509)	ash1l (ENSCLMG00005016162)	ENSCLMG00005016157	scamp3 (ENSCLMG00005016155)	crabp2b (ENSCLMG00005016151)	mrps21 (ENSCLMG00005016149)	ciarta (ENSCLMG00005016145)	rprd2a (ENSCLMG00005016141)	celf3a (ENSCLMG00005016137)	cers2a (ENSCLMG00005016126) #22	ENSCLMG00005016125	clk2a (ENSCLMG00005014789)	ENSCLMG00005014771	dnajc8 (ENSCLMG00005014765)	hnrnpr (ENSCLMG00005014516)	ENSCLMG00005014509	ADGRB1 (ENSCLMG00005014489)	HERPUD2 (ENSCLMG00005014485)	SLC4A7 (ENSCLMG00005014484)	eomesa (ENSCLMG00005014481)	ENSCLMG00005014461	ENSCLMG00005014452	TGFBR2 (ENSCLMG00005014450)	STT3B (ENSCLMG00005014434)	OSBPL10 (ENSCLMG00005014259)
Stickleback	MODERN SPECIES	9	s100a10a (ENSGACG00000003403)	icn (ENSGACG00000003398)	snx27a (ENSGACG00000003375)	ENSGACG00000003373	ENSGACG00000003370	chrna11 (ENSGACG00000003363)	ENSGACG00000003357	ENSGACG00000003336	ash1l (ENSGACG00000003327)	scamp3 (ENSGACG00000003303)	crabp2b (ENSGACG00000003295)	mrps21 (ENSGACG00000003294)	ciarta (ENSGACG00000003287)	rprd2a (ENSGACG00000003280)	celf3a (ENSGACG00000003274)	cers2a (ENSGACG00000003246) #22	ENSGACG00000003244	ENSGACG00000003241	clk2a (ENSGACG00000003232)	dnajc8 (ENSGACG00000003220)	hnrnpr (ENSGACG00000003202)	ENSGACG00000003200	ADGRB1 (ENSGACG00000003192)	HERPUD2 (ENSGACG00000003183)	SLC4A7 (ENSGACG00000003175)	eomesa (ENSGACG00000003160)	ENSGACG00000003159	ENSGACG00000003155	TGFBR2 (ENSGACG00000003140)	STT3B (ENSGACG00000003131)	OSBPL10 (ENSGACG00000003120)
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00880000138402	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b
Gilthead seabream	MODERN SPECIES	17	s100a10a (ENSSAUG00010007214)	icn (ENSSAUG00010007211)	SNX27 (ENSSAUG00010006968)	chrna11 (ENSSAUG00010006950)	ENSSAUG00010006932	ENSSAUG00010006924	lrrc71 (ENSSAUG00010006921)	ash1l (ENSSAUG00010006384)	ENSSAUG00010006374	scamp3 (ENSSAUG00010006372)	crabp2b (ENSSAUG00010006370)	mrps21 (ENSSAUG00010006368)	ciarta (ENSSAUG00010006367)	ENSSAUG00010006362	celf3a (ENSSAUG00010006272)	cers2a (ENSSAUG00010006253) #22	ENSSAUG00010006251	clk2a (ENSSAUG00010004324)	ENSSAUG00010004240	dnajc8 (ENSSAUG00010004118)	hnrnpr (ENSSAUG00010020391)	ENSSAUG00010020382	ADGRB1 (ENSSAUG00010020372)	HERPUD2 (ENSSAUG00010020364)	SLC4A7 (ENSSAUG00010020214)	eomesa (ENSSAUG00010020205)	ENSSAUG00010020147	TGFBR2 (ENSSAUG00010020142)	STT3B (ENSSAUG00010020125)	OSBPL10 (ENSSAUG00010020115)	TMEM42 (ENSSAUG00010020109)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
European seabass	MODERN SPECIES	22	trim46b (ENSDLAG00005014144)	s100a10a (ENSDLAG00005027842)	ENSDLAG00005014220	snx27a (ENSDLAG00005014237)	ENSDLAG00005014716	ENSDLAG00005014754	ENSDLAG00005031039	lrrc71 (ENSDLAG00005014963)	ash1l (ENSDLAG00005014995)	scamp3 (ENSDLAG00005015361)	crabp2b (ENSDLAG00005002362)	mrps21 (ENSDLAG00005002427)	ciarta (ENSDLAG00005002452)	rprd2a (ENSDLAG00005002510)	celf3a (ENSDLAG00005002656)	cers2a (ENSDLAG00005030362) #22	ENSDLAG00005003388	dnajc8 (ENSDLAG00005003696)	ENSDLAG00005003726	ENSDLAG00005003767	ENSDLAG00005004679	ENSDLAG00005005269	ENSDLAG00005005282	ENSDLAG00005005486	ENSDLAG00005005503	TGFBR2 (ENSDLAG00005005635)	STT3B (ENSDLAG00005005678)	OSBPL10 (ENSDLAG00005005744)	ENSDLAG00005034346	ENSDLAG00005033026	ZDHHC3 (ENSDLAG00005034845)
Large yellow croaker	MODERN SPECIES	484	s100a10a (ENSLCRG00005020045)	ENSLCRG00005020041	chrna11 (ENSLCRG00005020038)	snx27a (ENSLCRG00005020029)	ENSLCRG00005019996	ENSLCRG00005019987	lrrc71 (ENSLCRG00005019971)	ash1l (ENSLCRG00005019160)	rnf115b (ENSLCRG00005019098)	scamp3 (ENSLCRG00005019083)	crabp2b (ENSLCRG00005019080)	mrps21 (ENSLCRG00005019077)	ciarta (ENSLCRG00005019073)	rprd2a (ENSLCRG00005019043)	celf3a (ENSLCRG00005018913)	cers2a (ENSLCRG00005018874) #22	clk2a (ENSLCRG00005018736)	ENSLCRG00005018719	dnajc8 (ENSLCRG00005018706)	hnrnpr (ENSLCRG00005018673)	ENSLCRG00005018671	ADGRB1 (ENSLCRG00005018476)	HERPUD2 (ENSLCRG00005018433)	SLC4A7 (ENSLCRG00005012289)	eomesa (ENSLCRG00005011445)	ENSLCRG00005011442	ENSLCRG00005010548	TGFBR2 (ENSLCRG00005010415)	STT3B (ENSLCRG00005010341)	OSBPL10 (ENSLCRG00005010296)	TMEM42 (ENSLCRG00005010294)
Tetraodontidae	ANCESTRAL SPECIES	60	ENSGT00390000008892	ENSGT00940000158021.c	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22
Fugu	MODERN SPECIES	3	trim46b (ENSTRUG00000010910)	s100a10a (ENSTRUG00000011151)	icn (ENSTRUG00000019629)	snx27a (ENSTRUG00000011162)	chrna11 (ENSTRUG00000011358)	ENSTRUG00000019576	ENSTRUG00000029647	lrrc71 (ENSTRUG00000032494)	ash1l (ENSTRUG00000022988)	ENSTRUG00000011671	scamp3 (ENSTRUG00000011701)	crabp2b (ENSTRUG00000011951)	mrps21 (ENSTRUG00000022345)	rprd2a (ENSTRUG00000012016)	celf3a (ENSTRUG00000012064)	cers2a (ENSTRUG00000012292) #22	cfap20 (ENSTRUG00000026308)	dgat1a (ENSTRUG00000012581)	zgc:63863 (ENSTRUG00000012626)	ENSTRUG00000031799	SCRT1 (ENSTRUG00000012719)	ENSTRUG00000012739	ENSTRUG00000026302	cndp2 (ENSTRUG00000012921)	ENSTRUG00000027682	MTERF1 (ENSTRUG00000030432)	ENSTRUG00000025255	ENSTRUG00000022386	krit1 (ENSTRUG00000013413)	rpz2 (ENSTRUG00000021627)	si:dkey-266f7.9 (ENSTRUG00000019794)
Tetraodon	MODERN SPECIES	16	efna1a (ENSTNIG00000017558)	dpm3 (ENSTNIG00000001321)	trim46b (ENSTNIG00000017557)	s100a10a (ENSTNIG00000017556)	ENSTNIG00000017555	snx27a (ENSTNIG00000017554)	chrna11 (ENSTNIG00000017553)	ENSTNIG00000017552	ENSTNIG00000017551	ash1l (ENSTNIG00000017550)	ENSTNIG00000000111	scamp3 (ENSTNIG00000017549)	crabp2b (ENSTNIG00000017548)	ENSTNIG00000017547	celf3a (ENSTNIG00000017546)	cers2a (ENSTNIG00000017545) #22	cfap20 (ENSTNIG00000017544)	dgat1a (ENSTNIG00000017543)	zgc:63863 (ENSTNIG00000017542)	ENSTNIG00000017541	SLC39A4 (ENSTNIG00000017540)	RECQL4 (ENSTNIG00000017539)	cndp2 (ENSTNIG00000017538)	dus3l (ENSTNIG00000017537)	ENSTNIG00000017536	cyp51 (ENSTNIG00000017535)	krit1 (ENSTNIG00000017534)	si:dkey-266f7.9 (ENSTNIG00000017533)	mrpl9 (ENSTNIG00000017532)	prcc (ENSTNIG00000017531)	ENSTNIG00000017530
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Carangaria	ANCESTRAL SPECIES	14	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Seriola	ANCESTRAL SPECIES	12	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00950000182891.b.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000170307	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000177324.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b
Greater amberjack	MODERN SPECIES	48	s100a10a (ENSSDUG00000018200)	icn (ENSSDUG00000018209)	snx27a (ENSSDUG00000018214)	chrna11 (ENSSDUG00000018229)	ENSSDUG00000018270	ENSSDUG00000018423	lrrc71 (ENSSDUG00000018445)	ash1l (ENSSDUG00000018480)	ENSSDUG00000018582	scamp3 (ENSSDUG00000018597)	crabp2b (ENSSDUG00000018627)	mrps21 (ENSSDUG00000018643)	ciarta (ENSSDUG00000018656)	rprd2a (ENSSDUG00000018680)	celf3a (ENSSDUG00000018695)	cers2a (ENSSDUG00000018716) #22	clk2a (ENSSDUG00000018771)	ENSSDUG00000018794	dnajc8 (ENSSDUG00000018809)	hnrnpr (ENSSDUG00000018866)	ENSSDUG00000018906	ADGRB1 (ENSSDUG00000018991)	HERPUD2 (ENSSDUG00000019210)	SLC4A7 (ENSSDUG00000019230)	eomesa (ENSSDUG00000019261)	ENSSDUG00000019287	TGFBR2 (ENSSDUG00000019379)	STT3B (ENSSDUG00000019421)	OSBPL10 (ENSSDUG00000019502)	TMEM42 (ENSSDUG00000019546)	zdhhc3b (ENSSDUG00000019554)
Yellowtail amberjack	MODERN SPECIES	2834	trim46b (ENSSLDG00000014551)	s100a10b (ENSSLDG00000014481)	icn (ENSSLDG00000014466)	SNX27 (ENSSLDG00000014428)	ENSSLDG00000014381	ENSSLDG00000014293	ENSSLDG00000014234	ash1l (ENSSLDG00000014132)	ENSSLDG00000014064	scamp3 (ENSSLDG00000014024)	crabp2b (ENSSLDG00000014006)	mrps21 (ENSSLDG00000014000)	ciarta (ENSSLDG00000013983)	rprd2a (ENSSLDG00000013967)	celf3a (ENSSLDG00000013940)	cers2a (ENSSLDG00000013896) #22	clk2a (ENSSLDG00000013868)	ENSSLDG00000013844	dnajc8 (ENSSLDG00000013819)	hnrnpr (ENSSLDG00000013790)	ENSSLDG00000013723	ENSSLDG00000013696	ADGRB1 (ENSSLDG00000013658)	HERPUD2 (ENSSLDG00000013629)	SLC4A7 (ENSSLDG00000013330)	eomesa (ENSSLDG00000013253)	ENSSLDG00000013224	TGFBR2 (ENSSLDG00000013183)	ENSSLDG00000013174	ENSSLDG00000013162	ENSSLDG00000013151
Barramundi perch	MODERN SPECIES	279	trim46b (ENSLCAG00010022498)	s100a10a (ENSLCAG00010022493)	icn (ENSLCAG00010022492)	chrna11 (ENSLCAG00010022490)	snx27a (ENSLCAG00010022387)	ENSLCAG00010022342	ENSLCAG00010022320	lrrc71 (ENSLCAG00010022303)	ENSLCAG00010022276	scamp3 (ENSLCAG00010022275)	crabp2b (ENSLCAG00010022272)	mrps21 (ENSLCAG00010022269)	ciarta (ENSLCAG00010022265)	rprd2a (ENSLCAG00010022260)	celf3a (ENSLCAG00010022247)	cers2a (ENSLCAG00010022234) #22	clk2a (ENSLCAG00010022115)	ENSLCAG00010022083
Pleuronectoidei	ANCESTRAL SPECIES	54	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A
Tongue sole	MODERN SPECIES	9	icn (ENSCSEG00000007528)	snx27a (ENSCSEG00000007535)	chrna11 (ENSCSEG00000007567)	ENSCSEG00000007620	ENSCSEG00000007730	lrrc71 (ENSCSEG00000007744)	lrrc71 (ENSCSEG00000007755)	ash1l (ENSCSEG00000007773)	ENSCSEG00000007840	scamp3 (ENSCSEG00000007851)	crabp2b (ENSCSEG00000007867)	mrps21 (ENSCSEG00000007889)	ciarta (ENSCSEG00000007893)	rprd2a (ENSCSEG00000007901)	celf3a (ENSCSEG00000007913)	cers2a (ENSCSEG00000007949) #22	clk2a (ENSCSEG00000007968)	ENSCSEG00000008006	dnajc8 (ENSCSEG00000008018)	hnrnpr (ENSCSEG00000008039)	ENSCSEG00000008062	ADGRB1 (ENSCSEG00000008104)	ENSCSEG00000008226	spag1a (ENSCSEG00000008256)	elmo1 (ENSCSEG00000008265)	rp9 (ENSCSEG00000008277)	si:dkey-184p18.2 (ENSCSEG00000008292)	poc1bl (ENSCSEG00000008297)	GALNT12 (ENSCSEG00000008313)	gabbr2 (ENSCSEG00000008315)	elp2 (ENSCSEG00000008340)
Turbot	MODERN SPECIES	14	s100a10a (ENSSMAG00000034030)	ENSSMAG00000002999	ENSSMAG00000002961	ENSSMAG00000002934	ENSSMAG00000002845	ENSSMAG00000029355	lrrc71 (ENSSMAG00000002819)	ash1l (ENSSMAG00000002663)	ENSSMAG00000002626	scamp3 (ENSSMAG00000002617)	crabp2b (ENSSMAG00000002607)	mrps21 (ENSSMAG00000002544)	ciarta (ENSSMAG00000002523)	rprd2a (ENSSMAG00000002507)	celf3a (ENSSMAG00000002478)	cers2a (ENSSMAG00000002429) #22	ENSSMAG00000002407	ENSSMAG00000002396	dnajc8 (ENSSMAG00000002355)	ENSSMAG00000002272	ENSSMAG00000002106	ENSSMAG00000002072	ENSSMAG00000001969	ENSSMAG00000001918	slc9a3.2 (ENSSMAG00000001859)	lipea (ENSSMAG00000001823)	ENSSMAG00000001793	tomm40l (ENSSMAG00000001770)	apoa4a (ENSSMAG00000001753)	ENSSMAG00000029931	ENSSMAG00000001740
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Zig-zag eel	MODERN SPECIES	2	trim46b (ENSMAMG00000000378)	s100a10a (ENSMAMG00000000471)	ENSMAMG00000027096	snx27a (ENSMAMG00000000511)	ENSMAMG00000000580	ENSMAMG00000000628	ENSMAMG00000001166	ENSMAMG00000001205	ENSMAMG00000001258	scamp3 (ENSMAMG00000001304)	crabp2b (ENSMAMG00000001364)	mrps21 (ENSMAMG00000025689)	ciarta (ENSMAMG00000027139)	rprd2a (ENSMAMG00000001402)	celf3a (ENSMAMG00000001436)	cers2a (ENSMAMG00000001488) #22	ENSMAMG00000001543	ENSMAMG00000001581	dnajc8 (ENSMAMG00000001592)	ENSMAMG00000001632	ENSMAMG00000001861	ENSMAMG00000025183	ENSMAMG00000001990	ENSMAMG00000002146	ENSMAMG00000002176	TGFBR2 (ENSMAMG00000002248)	STT3B (ENSMAMG00000002300)	OSBPL10 (ENSMAMG00000002413)	TMEM42 (ENSMAMG00000002479)	zdhhc3b (ENSMAMG00000002494)	exosc7 (ENSMAMG00000002527)
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00940000165795.d	ENSGT00390000000920	ENSGT00950000183212.C.c.a	ENSGT00940000164921.b	ENSGT00950000182904.a.a.a.b	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c	ENSGT00940000157203.d	ENSGT00940000160917	ENSGT00940000157619.a.b	ENSGT00940000166610	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00940000175483	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00940000165091.c	ENSGT00940000157432.A	ENSGT00390000017671.a.a	ENSGT00940000157045.b	ENSGT00940000158728.k	ENSGT00940000157131.a	ENSGT00940000157527.b	ENSGT00940000155488.m.a	ENSGT00940000157880.g.b	ENSGT00390000012690.b	ENSGT00940000155721.b.a
Siamese fighting fish	MODERN SPECIES	2	s100a10b (ENSBSLG00000016077)	ENSBSLG00000016079	snx27a (ENSBSLG00000016097)	chrna11 (ENSBSLG00000016192)	ENSBSLG00000016250	ENSBSLG00000016255	lrrc71 (ENSBSLG00000016260)	ash1l (ENSBSLG00000016270)	ENSBSLG00000016284	scamp3 (ENSBSLG00000016290)	crabp2b (ENSBSLG00000016298)	mrps21 (ENSBSLG00000016301)	ciarta (ENSBSLG00000016305)	rprd2a (ENSBSLG00000016309)	celf3a (ENSBSLG00000016315)	cers2a (ENSBSLG00000016364) #22	clk2a (ENSBSLG00000016387)	ENSBSLG00000016518	dnajc8 (ENSBSLG00000016525)	hnrnpr (ENSBSLG00000016539)	ADGRB1 (ENSBSLG00000008325)	HERPUD2 (ENSBSLG00000008702)	SLC4A7 (ENSBSLG00000009041)	eomesa (ENSBSLG00000009601)	ENSBSLG00000009737	TGFBR2 (ENSBSLG00000009996)	STT3B (ENSBSLG00000010051)	OSBPL10 (ENSBSLG00000010354)	ENSBSLG00000010578	zdhhc3b (ENSBSLG00000010634)	exosc7 (ENSBSLG00000010718)
Climbing perch	MODERN SPECIES	2	ENSATEG00000009397	ENSATEG00000009392	ENSATEG00000009350	ENSATEG00000009317	ENSATEG00000009118	ENSATEG00000009100	lrrc71 (ENSATEG00000027205)	ash1l (ENSATEG00000009017)	ENSATEG00000008972	scamp3 (ENSATEG00000008964)	crabp2b (ENSATEG00000008948)	mrps21 (ENSATEG00000025909)	ciarta (ENSATEG00000028086)	rprd2a (ENSATEG00000008913)	celf3a (ENSATEG00000008884)	cers2a (ENSATEG00000008841) #22	ENSATEG00000008818	ENSATEG00000008798	dnajc8 (ENSATEG00000008750)	ENSATEG00000008698	ENSATEG00000008686	ENSATEG00000008582	ENSATEG00000008564	ENSATEG00000008509	ENSATEG00000008470	ENSATEG00000008433	TGFBR2 (ENSATEG00000008369)	STT3B (ENSATEG00000008300)	OSBPL10 (ENSATEG00000008238)	TMEM42 (ENSATEG00000029875)	zdhhc3b (ENSATEG00000008193)
Tiger tail seahorse	MODERN SPECIES	116							ENSHCOG00000006017	ash1l (ENSHCOG00000005991)	ENSHCOG00000005896	scamp3 (ENSHCOG00000005882)	mrps21 (ENSHCOG00000005872)	mrps21 (ENSHCOG00000005818)	ENSHCOG00000005761 #29	ENSHCOG00000005751	celf3a (ENSHCOG00000005746)	cers2a (ENSHCOG00000005722) #22	gnrhr1 (ENSHCOG00000005629)	gatad2b (ENSHCOG00000004961)	txnipa (ENSHCOG00000004936)
Pinecone sodierfish	MODERN SPECIES	2	s100a10a (ENSMMDG00005019210)	ENSMMDG00005019208	snx27a (ENSMMDG00005019134)	chrna11 (ENSMMDG00005019119)	ENSMMDG00005019098	ENSMMDG00005019077	lrrc71 (ENSMMDG00005019074)	ash1l (ENSMMDG00005019071)	ENSMMDG00005019068	scamp3 (ENSMMDG00005019065)	crabp2b (ENSMMDG00005019059)	mrps21 (ENSMMDG00005019054)	ciarta (ENSMMDG00005019051)	rprd2a (ENSMMDG00005019047)	celf3a (ENSMMDG00005019040)	cers2a (ENSMMDG00005019037) #22	clk2a (ENSMMDG00005017688)	ENSMMDG00005017648	dnajc8 (ENSMMDG00005017640)	hnrnpr (ENSMMDG00005017624)	ENSMMDG00005017621	ADGRB1 (ENSMMDG00005017617)	HERPUD2 (ENSMMDG00005017606)	SLC4A7 (ENSMMDG00005009210)	eomesa (ENSMMDG00005009042)	ENSMMDG00005007986	TGFBR2 (ENSMMDG00005007948)	STT3B (ENSMMDG00005007944)	ENSMMDG00005007939	ENSMMDG00005007938	OSBPL10 (ENSMMDG00005007937)
Cod	MODERN SPECIES	14	ENSGMOG00000030274	pygo2 (ENSGMOG00000035346)	cgnb (ENSGMOG00000010860)	ENSGMOG00000010849	C1orf43 (ENSGMOG00000010839)	ubap2l (ENSGMOG00000010809)	hax1 (ENSGMOG00000010798)	ENSGMOG00000033416	aqp10b (ENSGMOG00000010790)	znf687b (ENSGMOG00000027293) #7	ENSGMOG00000032053 #8	mrps21 (ENSGMOG00000027109)	ENSGMOG00000032572	ENSGMOG00000035576	ENSGMOG00000031313	cers2a (ENSGMOG00000002912) #22	ENSGMOG00000002879	dnajc8 (ENSGMOG00000002855)	ENSGMOG00000002822	ENSGMOG00000029558	ENSGMOG00000002756	ENSGMOG00000034516	ENSGMOG00000002663	ENSGMOG00000002634	ENSGMOG00000002600	TGFBR2 (ENSGMOG00000002583)	STT3B (ENSGMOG00000028686)	OSBPL10 (ENSGMOG00000010218)	rpl15 (ENSGMOG00000006888)	nkiras1 (ENSGMOG00000006878)	ENSGMOG00000036822
Protacanthopterygii	ANCESTRAL SPECIES	72	ENSGT00390000017418	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00530000063353.a.a	ENSGT01060000248589.D	ENSGT00950000182852.A.b	ENSGT00940000157193	ENSGT00390000004660.C.a.b	ENSGT01010000222287.B.b.a.b.a	ENSGT00390000018360.b	ENSGT00950000183094.a.n	ENSGT00940000154716.gc.b	ENSGT01030000234515.a.b.a.a.e #22	ENSGT00940000154947.k	ENSGT00390000012569.a	ENSGT00940000153511.a	ENSGT00390000010799	ENSGT00940000165091.d	ENSGT00390000002053	ENSGT00950000183034.B	ENSGT00390000004173	ENSGT00940000164027	ENSGT00940000155187.A	ENSGT00940000181185	ENSGT00950000183215.c.b	ENSGT00950000183092.b.b	ENSGT00940000175159	ENSGT00510000050935
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	659										ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #22	ENSGT00940000157471.b	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f
Salmoninae_a	ANCESTRAL SPECIES	48	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182904.a.a.a.b.c.b	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #22	ENSGT00940000157471.b	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n
Salmo	ANCESTRAL SPECIES	40	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182904.a.a.a.b.c.b	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #22	ENSGT00940000157471.b	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n	ENSGT00940000155721.b.a.f
Atlantic salmon	MODERN SPECIES	19	trim46b (ENSSSAG00000054481)	s10a4 (ENSSSAG00000054772)	ENSSSAG00000084587	s100a10a (ENSSSAG00000118630)	snx27a (ENSSSAG00000054800)	chrna11 (ENSSSAG00000096453)	ENSSSAG00000090235	ENSSSAG00000107195	ENSSSAG00000055243	ENSSSAG00000055397	scamp3 (ENSSSAG00000055404)	crabp2b (ENSSSAG00000055413)	ciarta (ENSSSAG00000107330)	rprd2a (ENSSSAG00000055435)	celf3a (ENSSSAG00000055446)	cers2a (ENSSSAG00000055868) #22	ENSSSAG00000055973	ENSSSAG00000056033	dnjc8 (ENSSSAG00000059917)	HNRPR (ENSSSAG00000061343)	ENSSSAG00000084525	ENSSSAG00000063533	ENSSSAG00000107886	ENSSSAG00000063607	ENSSSAG00000063614	ENSSSAG00000064060	ENSSSAG00000077826	ENSSSAG00000077832	ENSSSAG00000071403	TGFBR2 (ENSSSAG00000078078)	STT3B (ENSSSAG00000078086)
River trout	MODERN SPECIES	27	trim46b (ENSSTUG00000042165)	ENSSTUG00000042240	ENSSTUG00000042278	s100a10a (ENSSTUG00000042289)	ENSSTUG00000042315	snx27a (ENSSTUG00000042380)	chrna11 (ENSSTUG00000037089)	ENSSTUG00000037109	ash1l (ENSSTUG00000037149)	RNF115 (ENSSTUG00000037253)	scamp3 (ENSSTUG00000037278)	crabp2b (ENSSTUG00000037284)	ciarta (ENSSTUG00000037291)	rprd2a (ENSSTUG00000037297)	celf3a (ENSSTUG00000037316)	cers2a (ENSSTUG00000037420) #22	setdb1a (ENSSTUG00000037595)	clk2a (ENSSTUG00000037867)	dnajc8 (ENSSTUG00000039024)	hnrnpr (ENSSTUG00000039215)	ENSSTUG00000039826	ADGRB1 (ENSSTUG00000039877)	ENSSTUG00000040871	ENSSTUG00000040881	ENSSTUG00000040914	SLC4A7 (ENSSTUG00000041565)	eomesa (ENSSTUG00000047602)	ENSSTUG00000047616	TGFBR2 (ENSSTUG00000047751)	STT3B (ENSSTUG00000047761)	OSBPL10 (ENSSTUG00000047799)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00940000158021.c.a	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00950000182891.b.a.a	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #22	ENSGT00940000157471.b.e	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000159919.b.c	ENSGT00940000158021.c.a	ENSGT00970000197205.B	ENSGT00970000197205.D	ENSGT00940000165795.f.a	ENSGT00390000000920.j.a	ENSGT00950000183212.C.c.a.c	ENSGT00940000164921.b.d	ENSGT00940000156698.c.c	ENSGT00940000157203.d.c	ENSGT00940000160917.v	ENSGT00940000157619.a.b.f	ENSGT00390000018360.b.e	ENSGT00950000183094.a.n.c	ENSGT00940000154716.gc.b.d	ENSGT01030000234515.a.b.a.a.e.c #22	ENSGT00940000157471.b.e	ENSGT00940000154947.k.d	ENSGT00390000012569.a.lb	ENSGT00940000153511.a.ob.a.a	ENSGT00940000165091.c	ENSGT00940000157432.A.f	ENSGT00390000017671.a.a.b	ENSGT00530000063023.B.f	ENSGT00940000157045.b.e	ENSGT00940000158728.k.c	ENSGT00940000157131.a.d	ENSGT00940000157131.a.c.b	ENSGT00940000157527.b.c	ENSGT00940000155488.m.a.f	ENSGT00940000157880.g.b.n
Chinook salmon	MODERN SPECIES	5	trim46b (ENSOTSG00005009877)	ENSOTSG00005009878	ENSOTSG00005009879	ENSOTSG00005009880	s100a10a (ENSOTSG00005009881)	ENSOTSG00005009882	snx27a (ENSOTSG00005009884)	chrna11 (ENSOTSG00005010149)	ENSOTSG00005010194	ENSOTSG00005010214	scamp3 (ENSOTSG00005010217)	crabp2b (ENSOTSG00005010221)	ciarta (ENSOTSG00005010224)	rprd2a (ENSOTSG00005010227)	celf3a (ENSOTSG00005010230)	cers2a (ENSOTSG00005010239) #22	ENSOTSG00005010266	clk2a (ENSOTSG00005010267)	dnajc8 (ENSOTSG00005011501)	ENSOTSG00005011733	ENSOTSG00005012261	ADGRB1 (ENSOTSG00005012277)	HERPUD2 (ENSOTSG00005012859)	ENSOTSG00005012867	SLC4A7 (ENSOTSG00005013377)	eomesa (ENSOTSG00005015312)	ENSOTSG00005015313	ENSOTSG00005015314	mrpl28 (ENSOTSG00005015315)	ENSOTSG00005015316	ppp1r37 (ENSOTSG00005015319)
Coho salmon	MODERN SPECIES	8	trim46b (ENSOKIG00005020646)	ENSOKIG00005020635	s100a10a (ENSOKIG00005020627)	ENSOKIG00005020618	SNX27 (ENSOKIG00005020457)	ENSOKIG00005020354	ENSOKIG00005020327	ENSOKIG00005020310	ash1l (ENSOKIG00005019998)	ENSOKIG00005019989	scamp3 (ENSOKIG00005028025)	crabp2b (ENSOKIG00005028014)	ciarta (ENSOKIG00005027997)	rprd2a (ENSOKIG00005027984)	celf3a (ENSOKIG00005027935)	cers2a (ENSOKIG00005027727) #22	ENSOKIG00005027160	clk2a (ENSOKIG00005026569)	dnajc8 (ENSOKIG00005026404)	hnrnpr (ENSOKIG00005026241)	ENSOKIG00005026216	ADGRB1 (ENSOKIG00005026031)	HERPUD2 (ENSOKIG00005026004)	ENSOKIG00005025515	ENSOKIG00005025460	SLC4A7 (ENSOKIG00005024339)	eomesa (ENSOKIG00005024234)	ENSOKIG00005024150	TGFBR2 (ENSOKIG00005024091)	STT3B (ENSOKIG00005023762)	OSBPL10 (ENSOKIG00005023733)
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	24	s100a10a (ENSOMYG00000000673)	ENSOMYG00000074965	snx27a (ENSOMYG00000005256)	chrna11 (ENSOMYG00000011456)	ENSOMYG00000004215	ENSOMYG00000004382	ENSOMYG00000004535	ash1l (ENSOMYG00000011156)	ENSOMYG00000011264	scamp3 (ENSOMYG00000069466)	ENSOMYG00000060647	mrps21 (ENSOMYG00000023645)	ciarta (ENSOMYG00000023629)	rprd2a (ENSOMYG00000062185)	celf3a (ENSOMYG00000024025)	cers2a (ENSOMYG00000071708) #22	ENSOMYG00000062891	ENSOMYG00000004855	dnajc8 (ENSOMYG00000004831)	ENSOMYG00000031715	ENSOMYG00000075777	ENSOMYG00000008228	ENSOMYG00000071431	ENSOMYG00000011522	ENSOMYG00000061912	ENSOMYG00000011488	ENSOMYG00000062475	ENSOMYG00000064068	tgfr2 (ENSOMYG00000004242)	STT3B (ENSOMYG00000003955)	ENSOMYG00000052697
Rainbow trout	MODERN SPECIES	9	s100a10a (ENSOMYG00000042016)	ENSOMYG00000042008	ENSOMYG00000042011	ENSOMYG00000042020	snx27a (ENSOMYG00000042083)	ENSOMYG00000042663	ENSOMYG00000049157	ENSOMYG00000042802	ash1l (ENSOMYG00000042810)	ENSOMYG00000042816	scamp3 (ENSOMYG00000042820)	crabp2b (ENSOMYG00000042831)	ciarta (ENSOMYG00000042838)	rprd2a (ENSOMYG00000042841)	celf3a (ENSOMYG00000024971)	cers2a (ENSOMYG00000042862) #22	ENSOMYG00000042924	ENSOMYG00000042945	dnjc8 (ENSOMYG00000043024)	ENSOMYG00000043110	ENSOMYG00000077778	ENSOMYG00000006112	ENSOMYG00000006610	ENSOMYG00000007482	ENSOMYG00000010766	eomesa (ENSOMYG00000024395)	ENSOMYG00000062979	ENSOMYG00000053898	ENSOMYG00000071320	ENSOMYG00000024443	TGFBR2 (ENSOMYG00000024495)
Huchen	MODERN SPECIES	7507																CERS2 (ENSHHUG00000003726) #22
Salmoninae	ANCESTRAL SPECIES	164	ENSGT00390000000920.j.b	ENSGT00950000183212.C.c.a.d	ENSGT00940000164921.b.c	ENSGT00950000182904.a.a.a.b.d	ENSGT00950000182891.b.b.a	ENSGT00940000156698.c.c	ENSGT00440000034367	ENSGT00940000156698.c.d	ENSGT00940000157203.d.d	ENSGT00940000160917.u	ENSGT00940000157619.a.b.e	ENSGT00940000166610	ENSGT00390000018360.b.f	ENSGT00950000183094.a.n.d	ENSGT00940000154716.gc.b.c	ENSGT01030000234515.a.b.a.a.e.d #22	ENSGT00940000154947.k.c	ENSGT00390000012569.a.mb	ENSGT00940000153511.a.ob.a.b	ENSGT00940000167191	ENSGT00940000157432.A.e	ENSGT00940000178110	ENSGT00390000017671.a.a.a	ENSGT00940000157045.b.f	ENSGT00940000158728.k.d	ENSGT00940000157131.a.c.a	ENSGT00940000157527.b.d	ENSGT00940000155488.m.a.e	ENSGT00940000157880.g.b.m	ENSGT00390000012690.b.b	ENSGT00940000155721.b.a.e
Huchen	MODERN SPECIES	70		ENSHHUG00000033963	ENSHHUG00000033959	ENSHHUG00000033946	ENSHHUG00000033900	lrrc71 (ENSHHUG00000033889)	ENSHHUG00000033897	ash1l (ENSHHUG00000033874)	ENSHHUG00000033861	scamp3 (ENSHHUG00000033855)	crabp2b (ENSHHUG00000033844)	mrps21 (ENSHHUG00000033835)	ciarta (ENSHHUG00000033820)	rprd2a (ENSHHUG00000033815)	celf3a (ENSHHUG00000033743)	cers2a (ENSHHUG00000033733) #22	ENSHHUG00000033730	clk2a (ENSHHUG00000033548)	dnajc8 (ENSHHUG00000033401)	ENSHHUG00000033394	hnrnpr (ENSHHUG00000033360)	ADGRB1 (ENSHHUG00000033118)	HERPUD2 (ENSHHUG00000033105)	SLC4A7 (ENSHHUG00000032793)	eomesa (ENSHHUG00000032772)	ENSHHUG00000032653	TGFBR2 (ENSHHUG00000032630)	STT3B (ENSHHUG00000032620)	OSBPL10 (ENSHHUG00000032615)	TMEM42 (ENSHHUG00000032611)	zdhhc3b (ENSHHUG00000032604)
Salmoninae_a	ANCESTRAL SPECIES	118	ENSGT00970000197205.A	ENSGT00390000000920.j.b	ENSGT00950000183212.C.c.a.d	ENSGT00940000164921.b.c	ENSGT00950000182904.a.a.a.b.d	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c.d	ENSGT00940000157203.d.d	ENSGT00940000160917.u	ENSGT00940000157619.a.b.e	ENSGT00940000166610	ENSGT00390000018360.b.f	ENSGT00950000183094.a.n.d	ENSGT00940000154716.gc.b.c	ENSGT01030000234515.a.b.a.a.e.d #22	ENSGT00940000154947.k.c	ENSGT00390000012569.a.mb	ENSGT00940000153511.a.ob.a.b	ENSGT00940000167191	ENSGT00940000157432.A.e	ENSGT00940000178110	ENSGT00390000017671.a.a.a	ENSGT00940000157045.b.f	ENSGT00940000158728.k.d	ENSGT00940000157131.a.c.a	ENSGT00940000157527.b.d	ENSGT00940000155488.m.a.e	ENSGT00940000157880.g.b.m	ENSGT00390000012690.b.b	ENSGT00940000155721.b.a.e
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000165795.f.b	ENSGT00390000000920.j.b	ENSGT00950000183212.C.c.a.d	ENSGT00940000164921.b.c	ENSGT00950000182904.a.a.a.b.d	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c.d	ENSGT00940000157203.d.d	ENSGT00940000160917.u	ENSGT00940000157619.a.b.e	ENSGT00940000166610	ENSGT00390000018360.b.f	ENSGT00950000183094.a.n.d	ENSGT00940000154716.gc.b.c	ENSGT01030000234515.a.b.a.a.e.d #22	ENSGT00940000154947.k.c	ENSGT00390000012569.a.mb	ENSGT00940000153511.a.ob.a.b	ENSGT00940000167191	ENSGT00940000157432.A.e	ENSGT00390000017671.a.a.a	ENSGT00940000157045.b.f	ENSGT00940000158728.k.d	ENSGT00940000157131.a.c.a	ENSGT00940000157527.b.d	ENSGT00940000155488.m.a.e	ENSGT00940000157880.g.b.m	ENSGT00390000012690.b.b	ENSGT00940000155721.b.a.e	ENSGT00950000183186.B.b.d
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000005895	ENSSSAG00000005912	ENSSSAG00000005928	snx27a (ENSSSAG00000005972)	chrna11 (ENSSSAG00000006122)	ENSSSAG00000054888	ENSSSAG00000006178	ENSSSAG00000006316	ash1l (ENSSSAG00000006386)	scamp3 (ENSSSAG00000006602)	crabp2b (ENSSSAG00000100204)	ENSSSAG00000083132	ciarta (ENSSSAG00000055428)	rprd2a (ENSSSAG00000006624)	celf3a (ENSSSAG00000006653)	cers2a (ENSSSAG00000006824) #22	ENSSSAG00000085999	dnajc8 (ENSSSAG00000008456)	HNRPR (ENSSSAG00000008762)	ENSSSAG00000102007	ENSSSAG00000009151	ENSSSAG00000009220	ENSSSAG00000009699	ENSSSAG00000010454	eomes (ENSSSAG00000071390)	ENSSSAG00000077859	tgfr2 (ENSSSAG00000071570)	STT3B (ENSSSAG00000071590)	OSBPL10 (ENSSSAG00000071782)	TMEM42 (ENSSSAG00000105178)	zdhhc3b (ENSSSAG00000092629)
River trout	MODERN SPECIES	29	ENSSTUG00000038439	snx27a (ENSSTUG00000036928)	chrna11 (ENSSTUG00000036838)	ENSSTUG00000036829	ENSSTUG00000036811	ENSSTUG00000036751	lrrc71 (ENSSTUG00000036681)	ash1l (ENSSTUG00000035137)	ENSSTUG00000035067	scamp3 (ENSSTUG00000035050)	crabp2b (ENSSTUG00000035033)	mrps21 (ENSSTUG00000035022)	ciarta (ENSSTUG00000035011)	rprd2a (ENSSTUG00000035003)	celf3a (ENSSTUG00000034924)	cers2a (ENSSTUG00000034904) #22	clk2a (ENSSTUG00000034141)	dnajc8 (ENSSTUG00000034036)	hnrnpr (ENSSTUG00000033377)	ENSSTUG00000033356	ADGRB1 (ENSSTUG00000033292)	HERPUD2 (ENSSTUG00000033271)	SLC4A7 (ENSSTUG00000032913)	eomesa (ENSSTUG00000032882)	ENSSTUG00000032700	TGFBR2 (ENSSTUG00000032665)	STT3B (ENSSTUG00000032566)	OSBPL10 (ENSSTUG00000032510)	ENSSTUG00000032493	TMEM42 (ENSSTUG00000032484)	zdhhc3b (ENSSTUG00000032469)
Oncorhynchus	ANCESTRAL SPECIES	40	ENSGT00940000165795.f.b	ENSGT00940000165956.f	ENSGT00950000183212.C.c.a.d	ENSGT00940000164921.b.c	ENSGT00950000182904.a.a.a.b.d	ENSGT00950000182891.b.b.a	ENSGT00440000034367	ENSGT00940000156698.c.d	ENSGT00940000157203.d.d	ENSGT00940000160917.u	ENSGT00940000157619.a.b.e	ENSGT00940000166610	ENSGT00390000018360.b.f	ENSGT00950000183094.a.n.d	ENSGT00940000154716.gc.b.c	ENSGT01030000234515.a.b.a.a.e.d #22	ENSGT00940000154947.k.c	ENSGT00390000012569.a.mb	ENSGT00940000153511.a.ob.a.b	ENSGT00940000167191	ENSGT00940000157432.A.e	ENSGT00940000178110	ENSGT00390000017671.a.a.a	ENSGT00940000157045.b.f	ENSGT00940000158728.k.d	ENSGT00940000157131.a.c.a	ENSGT00940000157527.b.d	ENSGT00940000155488.m.a.e	ENSGT00940000157880.g.b.m	ENSGT00390000012690.b.b	ENSGT00940000155721.b.a.e
Oncorhynchus_a	ANCESTRAL SPECIES	45											ENSGT00940000157619.a.b.e	ENSGT00940000166610	ENSGT00390000018360.b.f	ENSGT00950000183094.a.n.d	ENSGT00940000154716.gc.b.c	ENSGT01030000234515.a.b.a.a.e.d #22	ENSGT00940000154947.k.c	ENSGT00390000012569.a.mb	ENSGT00940000153511.a.ob.a.b	ENSGT00940000167191	ENSGT00940000157432.A.e	ENSGT00390000017671.a.a.a	ENSGT00940000157045.b.f	ENSGT00940000158728.k.d	ENSGT00940000157131.a.c.a	ENSGT00940000157527.b.d	ENSGT00940000155488.m.a.e	ENSGT00940000157880.g.b.m	ENSGT00390000012690.b.b	ENSGT00940000155721.b.a.e	ENSGT00950000183186.B.b.d
Coho salmon	MODERN SPECIES	5	usf2 (ENSOKIG00005033816)	LMNA (ENSOKIG00005033932)	naxe (ENSOKIG00005034017)	ENSOKIG00005034033	SCN1B (ENSOKIG00005034056)	ENSOKIG00005034070	NFATC1 (ENSOKIG00005034093)	ENSOKIG00005034202	pleca (ENSOKIG00005034467)	nudcd1 (ENSOKIG00005036764)	ENSOKIG00005036841	crabp2b (ENSOKIG00005004269)	ciarta (ENSOKIG00005004335)	rprd2a (ENSOKIG00005004354)	celf3a (ENSOKIG00005004421)	cers2a (ENSOKIG00005004568) #22	CLK2 (ENSOKIG00005004660)	ENSOKIG00005005339	dnajc8 (ENSOKIG00005005373)	HNRNPR (ENSOKIG00005005911)	ENSOKIG00005006097	ADGRB1 (ENSOKIG00005006116)	HERPUD2 (ENSOKIG00005006148)	SLC4A7 (ENSOKIG00005006260)	EOMES (ENSOKIG00005006754)	ENSOKIG00005006776	ENSOKIG00005006811	TGFBR2 (ENSOKIG00005006953)	STT3B (ENSOKIG00005007051)	OSBPL10 (ENSOKIG00005007182)	TMEM42 (ENSOKIG00005007211)
Chinook salmon	MODERN SPECIES	24	s100a10a (ENSOTSG00005046553)	ENSOTSG00005046551	snx27a (ENSOTSG00005046549)	chrna11 (ENSOTSG00005046548)	ENSOTSG00005046546	ENSOTSG00005046543	lrrc71 (ENSOTSG00005046541)	ash1l (ENSOTSG00005046340)	ENSOTSG00005046325	ENSOTSG00005046323	crabp2b (ENSOTSG00005046319)	mrps21 (ENSOTSG00005046318)	ciarta (ENSOTSG00005046317)	rprd2a (ENSOTSG00005046316)	celf3a (ENSOTSG00005046250)	cers2a (ENSOTSG00005046245) #22	clk2a (ENSOTSG00005045438)	dnajc8 (ENSOTSG00005045243)	hnrnpr (ENSOTSG00005045240)	ENSOTSG00005045239	ADGRB1 (ENSOTSG00005045238)	SLC4A7 (ENSOTSG00005037737)	eomesa (ENSOTSG00005037664)	ENSOTSG00005037444	TGFBR2 (ENSOTSG00005037440)	STT3B (ENSOTSG00005037318)	OSBPL10 (ENSOTSG00005037306)	TMEM42 (ENSOTSG00005037305)	zdhhc3b (ENSOTSG00005037303)	CLEC3B (ENSOTSG00005037302)	ENSOTSG00005037300
Northern pike	MODERN SPECIES	9	rad21b (ENSELUG00000005643)	utp23 (ENSELUG00000005602)	RNF5 (ENSELUG00000005660)	slc44a4 (ENSELUG00000005710)	ehmt2 (ENSELUG00000005771)	zbtb12.2 (ENSELUG00000005796)	nelfe (ENSELUG00000005830)	skic2 (ENSELUG00000000181)	ENSELUG00000005939	tmem268 (ENSELUG00000006018)	ENSELUG00000006050	ENSELUG00000026652	ciarta (ENSELUG00000006069)	rprd2a (ENSELUG00000006084)	celf3a (ENSELUG00000006121)	cers2a (ENSELUG00000006172) #22	ENSELUG00000029967	ENSELUG00000006204	clk2a (ENSELUG00000006243)	dnajc8 (ENSELUG00000006366)	hnrnpr (ENSELUG00000006441)	atp5if1 (ENSELUG00000027942)	ADGRB1 (ENSELUG00000006553)	HERPUD2 (ENSELUG00000006593)	SLC4A7 (ENSELUG00000006776)	eomesa (ENSELUG00000006834)	ENSELUG00000006905	ENSELUG00000029852	TGFBR2 (ENSELUG00000006940)	STT3B (ENSELUG00000006981)	OSBPL10 (ENSELUG00000000248)
Osteoglossiformes	ANCESTRAL SPECIES	667															ENSGT00940000160917	ENSGT01030000234515.a.b.a.a.e #22
Asian bonytongue	MODERN SPECIES	15	ENSSFOG00015010003	lenep (ENSSFOG00015010016)	cks1b (ENSSFOG00015010027)	ENSSFOG00015010054	ENSSFOG00015010061	ENSSFOG00015010068	efna1a (ENSSFOG00015027882)	dpm3 (ENSSFOG00015010104)	TRIM46 (ENSSFOG00015010144)	s100a10a (ENSSFOG00015010165)	chrna11 (ENSSFOG00015010173)	ENSSFOG00015029803	ENSSFOG00015019806	scamp3 (ENSSFOG00015019764)	ENSSFOG00015019744	CERS2 (ENSSFOG00015019707) #22	ENSSFOG00015019651	NDUFV1 (ENSSFOG00015019612)	ENSSFOG00015019482	CACNG8 (ENSSFOG00015019456)	CACNG7 (ENSSFOG00015019428)	ENSSFOG00015019286	dbpa (ENSSFOG00015027514)	ENSSFOG00015025317	ENSSFOG00015032529	cnot3b (ENSSFOG00015019203)	u2af2b (ENSSFOG00015019182)	tpm3 (ENSSFOG00015019143)	ENSSFOG00015019119	ssr2 (ENSSFOG00015019095)	msto1 (ENSSFOG00015019076)
P. kingsleyae	MODERN SPECIES	796														ENSPKIG00000019856	ENSPKIG00000019851	CERS2 (ENSPKIG00000019794) #22
Osteoglossocephalai	ANCESTRAL SPECIES	38	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Clupeocephala	ANCESTRAL SPECIES		ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Otomorpha	ANCESTRAL SPECIES	14	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A.c.b	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Clupeiformes	ANCESTRAL SPECIES		ENSGT01060000251363	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A.c.b.b	ENSGT00940000164374.A.c.b.a	ENSGT00940000154947.l	ENSGT01060000248708.a	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000009294	dap3 (ENSCHAG00000009237)	GBA1 (ENSCHAG00000009079)	rnf115a (ENSCHAG00000009059)	polr3c (ENSCHAG00000008491)	ITGA10 (ENSCHAG00000008460)	crabp2a (ENSCHAG00000008445)	ENSCHAG00000008428	ca14 (ENSCHAG00000008369) #30	CIART (ENSCHAG00000008352)	prpf3 (ENSCHAG00000008244)	RPRD2 (ENSCHAG00000008220)	ENSCHAG00000007077	ENSCHAG00000007023	CELF3 (ENSCHAG00000007001)	CERS2 (ENSCHAG00000006978) #22	skp1 (ENSCHAG00000006968)	arnt (ENSCHAG00000006547) #24	setdb1b (ENSCHAG00000006237)	CXCR5 (ENSCHAG00000006226)	trim108 (ENSCHAG00000006119)	trim108 (ENSCHAG00000006001)	clk2b (ENSCHAG00000005172)	cyp11c1 (ENSCHAG00000004600)	ENSCHAG00000004556	pklr (ENSCHAG00000002526)	ENSCHAG00000002345	zbtb7b (ENSCHAG00000022741)	NDUFV1 (ENSCHAG00000022430)	khdc4 (ENSCHAG00000022406)	ENSCHAG00000022396
Denticle herring	MODERN SPECIES	15	ENSDCDG00000005293	ASH1L (ENSDCDG00000005288)	GBA1 (ENSDCDG00000004773)	rnf115a (ENSDCDG00000004727)	polr3c (ENSDCDG00000004716)	ITGA10 (ENSDCDG00000004565)	polr3c (ENSDCDG00000004503)	ITGA10 (ENSDCDG00000004491)	crabp2a (ENSDCDG00000004489)	ENSDCDG00000004488	ca14 (ENSDCDG00000004486) #30	CIART (ENSDCDG00000004484)	prpf3 (ENSDCDG00000004010)	RPRD2 (ENSDCDG00000003973)	ENSDCDG00000003843	CERS2 (ENSDCDG00000003829) #22	arnt (ENSDCDG00000003664) #24	setdb1b (ENSDCDG00000003641)	trim108 (ENSDCDG00000003637)	trim108 (ENSDCDG00000003630)	clk2b (ENSDCDG00000002843)	ENSDCDG00000002806	cyp11c1 (ENSDCDG00000002499)	pklr (ENSDCDG00000002333)	ENSDCDG00000002327	zbtb7b (ENSDCDG00000002324)	ENSDCDG00000002322	khdc4 (ENSDCDG00000002319)	ENSDCDG00000002315	ENSDCDG00000002311	ENSDCDG00000002226
Otophysi	ANCESTRAL SPECIES	58	ENSGT00940000161470.a.b.d	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224	ENSGT01030000234574.A.a.e.a	ENSGT00940000177739	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a	ENSGT00940000159433	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00390000018821	ENSGT00940000167238	ENSGT00390000004322	ENSGT00940000153560.b.a.b	ENSGT01060000248591.b.b	ENSGT00940000160074	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00940000155952	ENSGT00940000161470.a.b.d	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224	ENSGT01030000234574.A.a.e.a	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a	ENSGT00940000159433	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00390000018821	ENSGT00940000167238	ENSGT00390000004322	ENSGT00940000153560.b.a.b	ENSGT01060000248591.b.b	ENSGT00940000160074	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697
Channel catfish	MODERN SPECIES		nrsn1 (ENSIPUG00000000087)	dcdc2 (ENSIPUG00000000088)	slc6a3 (ENSIPUG00000000089)	c1s.1 (ENSIPUG00000000090)	LPCAT1 (ENSIPUG00000000091)	irx4a (ENSIPUG00000000093)	irx2 (ENSIPUG00000000094)	ENSIPUG00000000095	adamts16 (ENSIPUG00000000096)	ENSIPUG00000000097	ENSIPUG00000000098	ENSIPUG00000000099	ENSIPUG00000000100	ENSIPUG00000000101	ENSIPUG00000000102	CERS2 (ENSIPUG00000000103) #22	cdk5 (ENSIPUG00000000104)	pus3 (ENSIPUG00000000105)	grn (ENSIPUG00000000106)	ENSIPUG00000000107	Arf2 (ENSIPUG00000000108)	pck2 (ENSIPUG00000000109)	psme1 (ENSIPUG00000000110)	pak1ip1 (ENSIPUG00000000111)	tmem14cb (ENSIPUG00000000112)	ENSIPUG00000000113	ENSIPUG00000000114	ENSIPUG00000000115	ENSIPUG00000000116	ENSIPUG00000000117	ENSIPUG00000000119
Characiphysae_b	ANCESTRAL SPECIES	105		ENSGT00940000155952	ENSGT00940000161470.a.b.d	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224	ENSGT01030000234574.A.a.e.a	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a	ENSGT00940000159433	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00390000018821	ENSGT00940000167238	ENSGT00390000004322	ENSGT00940000153560.b.a.b	ENSGT01060000248591.b.b	ENSGT00940000160074	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697
Characoidei	ANCESTRAL SPECIES	144						ENSGT00940000161224	ENSGT01030000234574.A.a.e.a	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a	ENSGT00940000159433	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00390000018821	ENSGT00940000167238	ENSGT00390000004322	ENSGT00940000153560.b.a.b	ENSGT01060000248591.b.b	ENSGT00940000160074	ENSGT00940000161197	ENSGT00390000014743.j	ENSGT00550000075069	ENSGT00940000154244.B	ENSGT00510000048131	ENSGT01050000244894.a.a.a.a	ENSGT01030000234564.a.b	ENSGT00440000033697
Red-bellied piranha	MODERN SPECIES	686														ENSPNAG00000018064	CELF3 (ENSPNAG00000018005)	CERS2 (ENSPNAG00000017931) #22	arnt (ENSPNAG00000017912) #24	tfpt (ENSPNAG00000017880)	mrpl51 (ENSPNAG00000017837)	ndufa3 (ENSPNAG00000017813)	zgc:158689 (ENSPNAG00000017753)	ENSPNAG00000017745	CYTH2 (ENSPNAG00000017724)	SPHK2 (ENSPNAG00000017690)	cnot3a (ENSPNAG00000017679)	prpf31 (ENSPNAG00000003485)	ENSPNAG00000017519	leng1 (ENSPNAG00000017497)	ENSPNAG00000017471
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000038495	nrsn1 (ENSAMXG00000012733)	DCDC2 (ENSAMXG00000042627)	slc6a3 (ENSAMXG00000012702)	LPCAT1 (ENSAMXG00000012687)	ENSAMXG00000038449	irx4a (ENSAMXG00000043012)	irx2a (ENSAMXG00000012654)	irx1a (ENSAMXG00000012619)	ENSAMXG00000033912	ADAMTS16 (ENSAMXG00000012569)	ENSAMXG00000012548	ENSAMXG00000012533	ENSAMXG00000012499	CELF3 (ENSAMXG00000012489)	CERS2 (ENSAMXG00000038952) #22	arnt (ENSAMXG00000042984) #24	mrpl51 (ENSAMXG00000032697)	tfpt (ENSAMXG00000012465)	ndufa3 (ENSAMXG00000041521)	zgc:158689 (ENSAMXG00000041926)	ENSAMXG00000012428	CYTH2 (ENSAMXG00000035846)	ENSAMXG00000012399	cnot3a (ENSAMXG00000012359)	prpf31 (ENSAMXG00000012329)	ENSAMXG00000012311	leng1 (ENSAMXG00000012294)	RSPO2 (ENSAMXG00000037389)	eif3ea (ENSAMXG00000040417)	emc2 (ENSAMXG00000039406)
Electric eel	MODERN SPECIES	66	ENSEEEG00000024080	ENSEEEG00000024079	rab14 (ENSEEEG00000024076)	ttf1.1 (ENSEEEG00000024074)	cfap77 (ENSEEEG00000024073)	barhl1a (ENSEEEG00000024072)	DDX31 (ENSEEEG00000024070)	ak8 (ENSEEEG00000024066)	ENSEEEG00000024063	irx1a (ENSEEEG00000024062)	ADAMTS16 (ENSEEEG00000024061)	ENSEEEG00000024060	ENSEEEG00000024050	ENSEEEG00000024035	CELF3 (ENSEEEG00000024032)	CERS2 (ENSEEEG00000024030) #22	arnt (ENSEEEG00000024029) #24	mrpl51 (ENSEEEG00000024026)	tfpt (ENSEEEG00000024025)	ndufa3 (ENSEEEG00000024023)	zgc:158689 (ENSEEEG00000024022)	CYTH2 (ENSEEEG00000024016)	ENSEEEG00000024012	ENSEEEG00000024011	cnot3a (ENSEEEG00000024007)	prpf31 (ENSEEEG00000023997)	ENSEEEG00000023995	leng1 (ENSEEEG00000023994)	ENSEEEG00000023993	mboat7 (ENSEEEG00000023992)	gstk1 (ENSEEEG00000023990)
Cyprinoidei	ANCESTRAL SPECIES	144	ENSGT00940000161470.a.a	ENSGT01070000253760.b.b.a.a.c.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224	ENSGT01030000234574.A.a.e.a	ENSGT00940000177739	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a.a	ENSGT00940000159433	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00390000018821	ENSGT00940000167238	ENSGT00390000004322	ENSGT00940000153560.b.a.b	ENSGT01060000248591.b.b	ENSGT00940000160074	ENSGT00390000003774.a.a.d	ENSGT00940000166468	ENSGT00940000177120	ENSGT00940000161549.a.b	ENSGT00940000162855.a.a.a.a
Cyprininae	ANCESTRAL SPECIES	934												ENSGT00940000159433.d	ENSGT00950000183094.a.m.a	ENSGT00940000161136.e	ENSGT00940000154716.gc.a.b	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585.a #24
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	7	LPCAT1 (ENSCARG00000051265)	ENSCARG00000051253	irx4a (ENSCARG00000051226)	irx2a (ENSCARG00000051187)	ENSCARG00000051177	ENSCARG00000051166	irx1a (ENSCARG00000051119)	ADAMTS16 (ENSCARG00000050778)	ENSCARG00000050755	ENSCARG00000050751	ENSCARG00000050739	ENSCARG00000050731	ENSCARG00000050724	ENSCARG00000050555	CELF3 (ENSCARG00000050511)	CERS2 (ENSCARG00000050459) #22	arnt (ENSCARG00000050103) #24	tfpt (ENSCARG00000050086)	ndufa3 (ENSCARG00000050076)	zgc:158689 (ENSCARG00000050054)	ENSCARG00000024122	CYTH2 (ENSCARG00000022771)	zgc:91890 (ENSCARG00000022733)	ENSCARG00000022729	ENSCARG00000022724	ENSCARG00000022719	ENSCARG00000019757	ENSCARG00000019603	si:ch211-151o1.4 (ENSCARG00000019600)	SOGA3 (ENSCARG00000019588)	elovl4a (ENSCARG00000019576)
Goldfish	MODERN SPECIES	35														CELF3 (ENSCARG00000053339)	ENSCARG00000053352	CERS2 (ENSCARG00000053373) #22	arnt (ENSCARG00000053438) #24	tfpt (ENSCARG00000053932)	ndufa3 (ENSCARG00000053941)	zgc:158689 (ENSCARG00000053951)	ENSCARG00000053974	ENSCARG00000053982	CYTH2 (ENSCARG00000054046)	zgc:91890 (ENSCARG00000055398)	ENSCARG00000055604	ENSCARG00000055628	ENSCARG00000055689	apoeb (ENSCARG00000055702)	ENSCARG00000055708	apoa2 (ENSCARG00000055713)	apoc2 (ENSCARG00000055720)
Goldfish	MODERN SPECIES	35	ENSCARG00000006094	ENSCARG00000006127	ENSCARG00000006154	ENSCARG00000006159	HACE1 (ENSCARG00000006210)	ENSCARG00000006407	csf3r (ENSCARG00000006421)	ENSCARG00000006487	ENSCARG00000006495	ENSCARG00000006508	ENSCARG00000006519	ENSCARG00000006529	GRIK3 (ENSCARG00000006597)	ADAMTSL4 (ENSCARG00000007115)	CELF3 (ENSCARG00000007677)	CERS2 (ENSCARG00000007817) #22	arnt (ENSCARG00000007836) #24	mrpl51 (ENSCARG00000007942)	tfpt (ENSCARG00000007947)	ndufa3 (ENSCARG00000007956)	zgc:158689 (ENSCARG00000007966)	ENSCARG00000007974	CYTH2 (ENSCARG00000008002)	zgc:91890 (ENSCARG00000008706)	ENSCARG00000008714	ENSCARG00000008734	ENSCARG00000008739	ECHDC1 (ENSCARG00000009336)	si:ch211-151o1.4 (ENSCARG00000009340)	SOGA3 (ENSCARG00000009350)	elovl4a (ENSCARG00000009356)
Cyprininae_a	ANCESTRAL SPECIES	514				ENSGT00940000159377.h	ENSGT00940000161224.e	ENSGT01030000234574.A.a.e.a.b	ENSGT00940000177739	ENSGT00940000158596.a.a	ENSGT00940000161198	ENSGT00940000160429.h.a.a	ENSGT00940000159433.c	ENSGT00950000183094.a.m.b	ENSGT00940000159348	ENSGT00940000161136.f	ENSGT00940000154716.gc.a.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585.a #24
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	47	sox4b (ENSCCRG00000064749)	ENSCCRG00000055302	ENSCCRG00000009226	nrsn1 (ENSCCRG00000063262)	DCDC2 (ENSCCRG00000074477)	slc6a3 (ENSCCRG00000047356)	ENSCCRG00000048451	irx4a (ENSCCRG00000032313)	irx2a (ENSCCRG00000032425)	irx1a (ENSCCRG00000077893)	ADAMTS16 (ENSCCRG00000017200)	ENSCCRG00000079149	ENSCCRG00000021769	ENSCCRG00000078703	ENSCCRG00000024694	ENSCCRG00000080335 #22	ENSCCRG00000007944 #24	ENSCCRG00000058597	zgc:158689 (ENSCCRG00000007876)	ENSCCRG00000054458	ENSCCRG00000000356	zgc:91890 (ENSCCRG00000000785)	ENSCCRG00000059332	ENSCCRG00000046557	si:ch211-151o1.4 (ENSCCRG00000030616)	elovl4a (ENSCCRG00000047612)	dctn3 (ENSCCRG00000075654)	ENSCCRG00000055273	ttk (ENSCCRG00000030589)	bckdhb (ENSCCRG00000030601)	TENT5A (ENSCCRG00000057741)
Common carp reference	MODERN SPECIES	2	sox4b (ENSCCRG00000079285)	ENSCCRG00000053216	ENSCCRG00000075344	nrsn1 (ENSCCRG00000066162)	DCDC2 (ENSCCRG00000057874)	slc6a3 (ENSCCRG00000069101)	ENSCCRG00000062725	irx4a (ENSCCRG00000026641)	irx2a (ENSCCRG00000066625)	irx1a (ENSCCRG00000001427)	ADAMTS16 (ENSCCRG00000052575)	ENSCCRG00000055936	ENSCCRG00000070007	ENSCCRG00000052549	ENSCCRG00000029386	ENSCCRG00000008394 #22	arnt (ENSCCRG00000046344) #24	ENSCCRG00000046348	tfpt (ENSCCRG00000068067)	ndufa3 (ENSCCRG00000046355)	zgc:158689 (ENSCCRG00000046425)	ENSCCRG00000073455	zgc:91890 (ENSCCRG00000070274)	ENSCCRG00000053445	ENSCCRG00000073934	ENSCCRG00000041680	si:ch211-151o1.4 (ENSCCRG00000041686)	elovl4a (ENSCCRG00000082804)	ttk (ENSCCRG00000004318)	bckdhb (ENSCCRG00000053143)	ENSCCRG00000058012
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	652	nrsn1 (ENSSGRG00000012224)	ENSSGRG00000012221	slc6a3 (ENSSGRG00000012219)	ENSSGRG00000012218	ENSSGRG00000012217	ENSSGRG00000012216	irx4a (ENSSGRG00000012215)	irx2a (ENSSGRG00000012214)	irx1a (ENSSGRG00000012209)	ENSSGRG00000012208	ENSSGRG00000011878	ENSSGRG00000011872	ADAMTS16 (ENSSGRG00000011867)	ENSSGRG00000011866	ENSSGRG00000011865	CERS2 (ENSSGRG00000011859) #22	arnt (ENSSGRG00000011856) #24	ENSSGRG00000011855	tfpt (ENSSGRG00000011852)	ndufa3 (ENSSGRG00000011849)	zgc:158689 (ENSSGRG00000011845)	ENSSGRG00000011843	CYTH2 (ENSSGRG00000011839)	ENSSGRG00000011835	ENSSGRG00000010069
Golden-line barbel	MODERN SPECIES	2644																CERS2 (ENSSGRG00000010536) #22
Golden-line barbel	MODERN SPECIES	670												ENSSGRG00000036846	ENSSGRG00000036853	CELF3 (ENSSGRG00000036858)	ENSSGRG00000036982	CERS2 (ENSSGRG00000036984) #22	arnt (ENSSGRG00000037000) #24	mrpl51 (ENSSGRG00000037580)	ENSSGRG00000037582	ndufa3 (ENSSGRG00000037584)	zgc:158689 (ENSSGRG00000037586)	ENSSGRG00000037590	CYTH2 (ENSSGRG00000037618)	zgc:91890 (ENSSGRG00000037944)	ENSSGRG00000037946	ENSSGRG00000037948	ENSSGRG00000037949	ENSSGRG00000037958	ENSSGRG00000038161	si:ch211-151o1.4 (ENSSGRG00000038162)	SOGA3 (ENSSGRG00000038163)
Zebrafish	MODERN SPECIES	7	ENSDARG00000110572	CDKAL1 (ENSDARG00000104848)	sox4b (ENSDARG00000098834)	ENSDARG00000088689	nrsn1 (ENSDARG00000111235)	slc6a3 (ENSDARG00000004219)	ENSDARG00000115651	irx4a (ENSDARG00000035648)	irx2a (ENSDARG00000001785)	irx1a (ENSDARG00000101831)	ADAMTS16 (ENSDARG00000074646)	ENSDARG00000074676	ENSDARG00000075385	ENSDARG00000063407	CELF3 (ENSDARG00000006983)	CERS2 (ENSDARG00000058992) #22	sim1a (ENSDARG00000023316)	ASCC3 (ENSDARG00000086678)	GRIK2 (ENSDARG00000113771)	HACE1 (ENSDARG00000062280)	ENSDARG00000051912	ENSDARG00000113659	CNIH4 (ENSDARG00000087759)	WDR26 (ENSDARG00000062310)	ADCY3 (ENSDARG00000077145)	preb (ENSDARG00000101602)	lyplal1 (ENSDARG00000088764)	tgfb2 (ENSDARG00000027087)	acot22 (ENSDARG00000058945)	FEZ2 (ENSDARG00000073784)	CLEC3B (ENSDARG00000076541)
Euteleosteomorpha	ANCESTRAL SPECIES	4	ENSGT00950000182908.A	ENSGT00940000159154	ENSGT00390000006096.a.b	ENSGT00940000157006	ENSGT01030000234542.b.b.a.a.a.a	ENSGT01030000234542.b.b.a.a.b	ENSGT00390000002049.d	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Acanthomorphata	ANCESTRAL SPECIES	9	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00940000154716.hc	ENSGT00940000171776	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005016662	dap3 (ENSMMDG00005016665)	GBA1 (ENSMMDG00005016674)	rnf115a (ENSMMDG00005016848)	polr3c (ENSMMDG00005001235)	ITGA10 (ENSMMDG00005001325)	crabp2a (ENSMMDG00005001337)	ENSMMDG00005001343	ca14 (ENSMMDG00005001354) #30	CIART (ENSMMDG00005001358)	prpf3 (ENSMMDG00005001387)	RPRD2 (ENSMMDG00005001477)	ENSMMDG00005001699	ENSMMDG00005006773	CELF3 (ENSMMDG00005006781)	CERS2 (ENSMMDG00005006785) #22	arnt (ENSMMDG00005006813) #24	setdb1b (ENSMMDG00005006874)	ENSMMDG00005007077	clk2b (ENSMMDG00005007081)	ENSMMDG00005007087	cyp11c1 (ENSMMDG00005007096)	pklr (ENSMMDG00005007168)	ENSMMDG00005007176	zbtb7b (ENSMMDG00005007179)	NDUFV1 (ENSMMDG00005007186)	khdc4 (ENSMMDG00005007296)	ENSMMDG00005007300	ENSMMDG00005007301	ENSMMDG00005007305	si:ch211-120k19.1 (ENSMMDG00005007320)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Tiger tail seahorse	MODERN SPECIES	300	polr3c (ENSHCOG00000000823)	ITGA10 (ENSHCOG00000013872)	ENSHCOG00000013885	ENSHCOG00000013900	crabp2a (ENSHCOG00000013915)	ENSHCOG00000013921	ca14 (ENSHCOG00000014032) #30	CIART (ENSHCOG00000014049)	prpf3 (ENSHCOG00000014058)	ENSHCOG00000014067	ENSHCOG00000014082	ENSHCOG00000014119	ENSHCOG00000014130	ENSHCOG00000014147	CELF3 (ENSHCOG00000000397)	CERS2 (ENSHCOG00000014180) #22	arnt (ENSHCOG00000014536) #24	setdb1b (ENSHCOG00000014567)	clk2b (ENSHCOG00000014646)	cyp11c1 (ENSHCOG00000014670)	pklr (ENSHCOG00000014717)	ENSHCOG00000014746	zbtb7b (ENSHCOG00000014760)	cyp4t8 (ENSHCOG00000015162)	cyp4t8 (ENSHCOG00000015565)	med18 (ENSHCOG00000015588)	ENSHCOG00000015599	SCMH1 (ENSHCOG00000015614)	cited4b (ENSHCOG00000015625)	ctps1b (ENSHCOG00000015683)	rab42b (ENSHCOG00000015692)
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j	ENSGT00940000160074
Chinese medaka	MODERN SPECIES	467	ENSOSIG00000015664	dap3 (ENSOSIG00000015667)	GBA1 (ENSOSIG00000015867)	rnf115a (ENSOSIG00000015876)	polr3c (ENSOSIG00000015878)	ITGA10 (ENSOSIG00000015893)	crabp2a (ENSOSIG00000015997)	ENSOSIG00000016000	ENSOSIG00000016001	ca14 (ENSOSIG00000016006) #30	ENSOSIG00000016008	ENSOSIG00000016009	ENSOSIG00000016026	ENSOSIG00000017644	CELF3 (ENSOSIG00000017648)	CERS2 (ENSOSIG00000017658) #22	arnt (ENSOSIG00000017723) #24	setdb1b (ENSOSIG00000018480)	cyp11c1 (ENSOSIG00000018566)	pklr (ENSOSIG00000019535)	ENSOSIG00000020348	zbtb7b (ENSOSIG00000020349)	khdc4 (ENSOSIG00000020351)	ENSOSIG00000020353	KCNJ14 (ENSOSIG00000020354)	ENSOSIG00000020357	si:ch211-120k19.1 (ENSOSIG00000020359)	rpl18 (ENSOSIG00000020363)	ENSOSIG00000020373	CYTH2 (ENSOSIG00000020401)	ENSOSIG00000020489
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000022122	dap3 (ENSORLG00000010053)	gba (ENSORLG00000010079)	rnf115a (ENSORLG00000010107)	polr3c (ENSORLG00000010133)	ITGA10 (ENSORLG00000010249)	crabp2a (ENSORLG00000010277)	ENSORLG00000024479	ca14 (ENSORLG00000010291) #30	CIART (ENSORLG00000010295)	prpf3 (ENSORLG00000010330)	RPRD2 (ENSORLG00000010343)	ENSORLG00000010391	ENSORLG00000010424	CELF3 (ENSORLG00000010447)	CERS2 (ENSORLG00000010512) #22	arnt (ENSORLG00000010551) #24	setdb1b (ENSORLG00000010602)	ENSORLG00000022513	clk2b (ENSORLG00000010615)	cyp11b (ENSORLG00000010480)	pklr (ENSORLG00000010652)	ENSORLG00000010670	zbtb7b (ENSORLG00000010678)	khdc4 (ENSORLG00000010686)	ENSORLG00000010691	KCNJ14 (ENSORLG00000010708)	ENSORLG00000010926	si:ch211-120k19.1 (ENSORLG00000010938)	rpl18 (ENSORLG00000023266)	ENSORLG00000024922
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT01090000260242	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000018892	dap3 (ENSOJAG00000018913)	GBA1 (ENSOJAG00000019129)	rnf115a (ENSOJAG00000019441)	polr3c (ENSOJAG00000019474)	ITGA10 (ENSOJAG00000019505)	crabp2a (ENSOJAG00000019646)	ENSOJAG00000019652	ca14 (ENSOJAG00000019663) #30	prpf3 (ENSOJAG00000019697)	ENSOJAG00000019793	ENSOJAG00000019800	ENSOJAG00000019837	ENSOJAG00000019873	CELF3 (ENSOJAG00000020014)	CERS2 (ENSOJAG00000020190) #22	arnt (ENSOJAG00000020250) #24	setdb1b (ENSOJAG00000020866)	ENSOJAG00000001960	si:ch211-81a5.8 (ENSOJAG00000002047)	cyp11c1 (ENSOJAG00000002143)	pklr (ENSOJAG00000002772)	ENSOJAG00000004375	zbtb7b (ENSOJAG00000004458)	khdc4 (ENSOJAG00000004481)	ENSOJAG00000004553	ENSOJAG00000004576	ENSOJAG00000004600	KCNJ14 (ENSOJAG00000004625)	si:ch211-120k19.1 (ENSOJAG00000005545)	rpl18 (ENSOJAG00000005574)
Indian medaka	MODERN SPECIES	5	rnf115a (ENSOMEG00000008504)	polr3c (ENSOMEG00000008558)	ITGA10 (ENSOMEG00000008660)	crabp2a (ENSOMEG00000008684)	ENSOMEG00000008697	ENSOMEG00000008710	ENSOMEG00000008727	ca14 (ENSOMEG00000008792) #30	CIART (ENSOMEG00000008836)	prpf3 (ENSOMEG00000000940)	ENSOMEG00000008935	ENSOMEG00000008953	ENSOMEG00000009022	ENSOMEG00000009061	CELF3 (ENSOMEG00000009131)	CERS2 (ENSOMEG00000009154) #22	arnt (ENSOMEG00000009257) #24	setdb1b (ENSOMEG00000009457)	clk2b (ENSOMEG00000009526)	ENSOMEG00000009548	cyp11c1 (ENSOMEG00000009612)	pklr (ENSOMEG00000009673)	ENSOMEG00000009753	zbtb7b (ENSOMEG00000009771)	khdc4 (ENSOMEG00000009796)	ENSOMEG00000009809	KCNJ14 (ENSOMEG00000009831)	ENSOMEG00000009938	si:ch211-120k19.1 (ENSOMEG00000009970)	rpl18 (ENSOMEG00000009999)	ENSOMEG00000010027
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Mangrove rivulus	MODERN SPECIES	81	ENSKMAG00000001749	dap3 (ENSKMAG00000001741)	GBA1 (ENSKMAG00000001722)	rnf115a (ENSKMAG00000001643)	polr3c (ENSKMAG00000001574)	ITGA10 (ENSKMAG00000001549)	crabp2a (ENSKMAG00000001532)	ENSKMAG00000001521	ca14 (ENSKMAG00000001496) #30	ENSKMAG00000001480	prpf3 (ENSKMAG00000001390)	RPRD2 (ENSKMAG00000001366)	ENSKMAG00000001354	ENSKMAG00000001330	CELF3 (ENSKMAG00000001269)	CERS2 (ENSKMAG00000001244) #22	arnt (ENSKMAG00000001221) #24	setdb1b (ENSKMAG00000001197)	ENSKMAG00000001130
Turquoise killifish	MODERN SPECIES	1614	ENSNFUG00015022125	dap3 (ENSNFUG00015022122)	GBA1 (ENSNFUG00015022075)	RNF115 (ENSNFUG00015022042)	polr3c (ENSNFUG00015022032)	ITGA10 (ENSNFUG00015021802)	crabp2a (ENSNFUG00015021796)	ENSNFUG00015021792	ca14 (ENSNFUG00015021788) #30	ENSNFUG00015021786	ENSNFUG00015020860	ENSNFUG00015020820	ADAMTSL4 (ENSNFUG00015020567)	ENSNFUG00015020548	CELF3B (ENSNFUG00015020545)	CERS2 (ENSNFUG00015020543) #22	arnt (ENSNFUG00015020531) #24	u2af2a (ENSNFUG00015020527)	CACNG6B (ENSNFUG00015020525)	CACNG8 (ENSNFUG00015020520)	ENSNFUG00015020519	CACNG7B (ENSNFUG00015020517)	ENSNFUG00015016036	ENSNFUG00015015789	Nfu_g_1_001127 (ENSNFUG00015015775)	ENSNFUG00015015630	ENSNFUG00015015613	ntd5 (ENSNFUG00015015577)	DBPB (ENSNFUG00015015487)	ZNF865 (ENSNFUG00015015471)	SHISA7 (ENSNFUG00015015466)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838
NAME_4	ANCESTRAL SPECIES	1	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Mummichog	MODERN SPECIES	2225	ENSFHEG00000021416	dap3 (ENSFHEG00000021426)	GBA1 (ENSFHEG00000021460)	rnf115a (ENSFHEG00000021540)	polr3c (ENSFHEG00000000872)	ITGA10 (ENSFHEG00000021641)	crabp2a (ENSFHEG00000021658)	ENSFHEG00000021670	ca14 (ENSFHEG00000021685) #30	CIART (ENSFHEG00000021699)	prpf3 (ENSFHEG00000021746)	RPRD2 (ENSFHEG00000021755)	ENSFHEG00000021877	ENSFHEG00000021887	CELF3 (ENSFHEG00000021947)	CERS2 (ENSFHEG00000021996) #22	arnt (ENSFHEG00000022149) #24	setdb1b (ENSFHEG00000022195)	clk2b (ENSFHEG00000022294)	cyp11c1 (ENSFHEG00000022306)	pklr (ENSFHEG00000022367)	ENSFHEG00000022413	zbtb7b (ENSFHEG00000022426)	NDUFV1 (ENSFHEG00000022456)	khdc4 (ENSFHEG00000022540)	ENSFHEG00000022558	ENSFHEG00000022581	ENSFHEG00000022701	ENSFHEG00000022717	si:ch211-120k19.1 (ENSFHEG00000022726)	rpl18 (ENSFHEG00000022747)
Sheepshead minnow	MODERN SPECIES	341				polr3c (ENSCVAG00000009443)	ENSCVAG00000009395	crabp2a (ENSCVAG00000009372)	ENSCVAG00000009358	ca14 (ENSCVAG00000009348) #30	CIART (ENSCVAG00000009325)	prpf3 (ENSCVAG00000009318)	RPRD2 (ENSCVAG00000009274)	ENSCVAG00000009269	ENSCVAG00000009253	ENSCVAG00000009194	CELF3 (ENSCVAG00000009184)	CERS2 (ENSCVAG00000009101) #22	arnt (ENSCVAG00000008992) #24	setdb1b (ENSCVAG00000008877)	clk2b (ENSCVAG00000000248)	ENSCVAG00000008807	cyp11c1 (ENSCVAG00000008800)	pklr (ENSCVAG00000008759)	ENSCVAG00000008694	zbtb7b (ENSCVAG00000008597)	NDUFV1 (ENSCVAG00000008586)	ENSCVAG00000000955	ENSCVAG00000008536	ENSCVAG00000008533	ENSCVAG00000008516	ENSCVAG00000008396	si:ch211-120k19.1 (ENSCVAG00000008380)
Poeciliinae	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Poecilia	ANCESTRAL SPECIES		ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
NAME_6	DUPLICATION
NAME_6	ANCESTRAL SPECIES	36	ENSGT00940000156698.d	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f.g #22
Amazon molly	MODERN SPECIES	328	ENSPFOG00000024568	dap3 (ENSPFOG00000014273)	GBA1 (ENSPFOG00000014161)	rnf115a (ENSPFOG00000014156)	polr3c (ENSPFOG00000014106)	ITGA10 (ENSPFOG00000013856)	crabp2a (ENSPFOG00000013813)	ENSPFOG00000020915	ca14 (ENSPFOG00000013735) #30	CIART (ENSPFOG00000013718)	prpf3 (ENSPFOG00000013638)	ENSPFOG00000013631	ENSPFOG00000013444	ENSPFOG00000013385	CELF3 (ENSPFOG00000013307)	CERS2 (ENSPFOG00000013108) #22
Sailfin molly	MODERN SPECIES	732							crabp2a (ENSPLAG00000018022)	ENSPLAG00000018029	ca14 (ENSPLAG00000018041) #30	CIART (ENSPLAG00000018049)	prpf3 (ENSPLAG00000018103)	RPRD2 (ENSPLAG00000018111)	ENSPLAG00000018145	ENSPLAG00000018157	CELF3 (ENSPLAG00000018202)	CERS2 (ENSPLAG00000018229) #22
NAME_6	ANCESTRAL SPECIES	24																ENSGT01030000234515.a.b.a.a.f.h #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Sailfin molly	MODERN SPECIES	3721															ENSPLAG00000017418	CERS2 (ENSPLAG00000017373) #22	arnt (ENSPLAG00000017159) #24	setdb1b (ENSPLAG00000017117)
Amazon molly	MODERN SPECIES	286															setdb1b (ENSPFOG00000004623)	CERS2 (ENSPFOG00000004719) #22	arnt (ENSPFOG00000005237) #24	setdb1b (ENSPFOG00000004429)	ENSPFOG00000023289	clk2b (ENSPFOG00000005421)	ENSPFOG00000005571	cyp11c1 (ENSPFOG00000005578)	pklr (ENSPFOG00000005647)	ENSPFOG00000005730	zbtb7b (ENSPFOG00000005859)	NDUFV1 (ENSPFOG00000005879)	ENSPFOG00000006071	ENSPFOG00000006295	ENSPFOG00000005853	ENSPFOG00000006597	si:ch211-120k19.1 (ENSPFOG00000008279)
Guppy	MODERN SPECIES	446	MATN2 (ENSPREG00000016949)	rnf115a (ENSPREG00000017007)	polr3c (ENSPREG00000017050)	ITGA10 (ENSPREG00000017097)	crabp2a (ENSPREG00000017134)	ENSPREG00000017155	ca14 (ENSPREG00000017170) #30	ENSPREG00000017198	prpf3 (ENSPREG00000017216)	ENSPREG00000017263	RPRD2 (ENSPREG00000017269)	ENSPREG00000017293	ENSPREG00000017312	ENSPREG00000017342	CELF3 (ENSPREG00000017378)	CERS2 (ENSPREG00000017409) #22	arnt (ENSPREG00000017435) #24	setdb1b (ENSPREG00000017459)	clk2b (ENSPREG00000017497)	ENSPREG00000017511	cyb5r4 (ENSPREG00000017539)	ENSPREG00000017560	sim1a (ENSPREG00000017582)	ASCC3 (ENSPREG00000017616)	ENSPREG00000017685	ENSPREG00000017694	GRIK2 (ENSPREG00000017794)	ENSPREG00000017838	HACE1 (ENSPREG00000017873)	popdc3 (ENSPREG00000017962)	dtnbp1a (ENSPREG00000017991)
Platyfish	MODERN SPECIES	17	dap3 (ENSXMAG00000016165)	GBA1 (ENSXMAG00000016183)	rnf115a (ENSXMAG00000021206)	polr3c (ENSXMAG00000016215)	ITGA10 (ENSXMAG00000016260)	crabp2a (ENSXMAG00000016304)	ENSXMAG00000019942	ca14 (ENSXMAG00000016324) #30	ENSXMAG00000026817	ENSXMAG00000029619	prpf3 (ENSXMAG00000016347)	RPRD2 (ENSXMAG00000016368)	ENSXMAG00000016382	ENSXMAG00000016454	CELF3 (ENSXMAG00000016475)	CERS2 (ENSXMAG00000016508) #22	arnt (ENSXMAG00000016545) #24	setdb1b (ENSXMAG00000016600)	ENSXMAG00000022818	clk2b (ENSXMAG00000016620)	cyp11c1 (ENSXMAG00000016675)	pklr (ENSXMAG00000016700)	ENSXMAG00000021968	zbtb7b (ENSXMAG00000012652)	NDUFV1 (ENSXMAG00000012641)	khdc4 (ENSXMAG00000012623)	ENSXMAG00000012619	ENSXMAG00000012601	ENSXMAG00000012405	si:ch211-120k19.1 (ENSXMAG00000012399)	rpl18 (ENSXMAG00000012396)
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Pomacentridae	ANCESTRAL SPECIES	79	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Pomacentridae_A	ANCESTRAL SPECIES	78	ENSGT00940000158358.b	ENSGT00930000151452	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838
Spiny chromis	MODERN SPECIES	1866																CERS2 (ENSAPOG00000015937) #22	arnt (ENSAPOG00000016211) #24	setdb1b (ENSAPOG00000016228)	ENSAPOG00000016243	clk2b (ENSAPOG00000016282)
Amphiprion	ANCESTRAL SPECIES	111	ENSGT00940000158358.b	ENSGT00390000014907.A	ENSGT00950000183037.A.a	ENSGT00390000016435.g.b	ENSGT00940000157431.c.b	ENSGT00950000182938.b.b.b.b.a	ENSGT00390000001195.b	ENSGT00940000157689	ENSGT00940000155356.d.b.b.b.a.c.a.a.b	ENSGT00940000154969.a	ENSGT00940000158389	ENSGT00940000159103	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a
Orange clownfish	MODERN SPECIES	21	pklr (ENSAPEG00000007253)	cyp11c1 (ENSAPEG00000007279)	clk2b (ENSAPEG00000007326)	ENSAPEG00000007374	ENSAPEG00000007399	ENSAPEG00000007424	ENSAPEG00000007443	ENSAPEG00000007466	ENSAPEG00000007476	ENSAPEG00000007497	ENSAPEG00000007512	ENSAPEG00000007567	ENSAPEG00000007596	ENSAPEG00000007622	CELF3 (ENSAPEG00000007642)	CERS2 (ENSAPEG00000007683) #22	arnt (ENSAPEG00000007716) #24	setdb1b (ENSAPEG00000007774)	ENSAPEG00000007964	ntd5 (ENSAPEG00000008003)	prpf31 (ENSAPEG00000008035)	ENSAPEG00000008083	ENSAPEG00000008103	leng1 (ENSAPEG00000008114)	ENSAPEG00000008121	mboat7 (ENSAPEG00000008135)	rps9 (ENSAPEG00000008214)	rbfox1l (ENSAPEG00000008232)	leng8 (ENSAPEG00000008289)	cdc42ep5 (ENSAPEG00000008306)	grwd1 (ENSAPEG00000008321)
Bicolor damselfish	MODERN SPECIES	1058			vamp1b (ENSSPAG00000018341)	mrpl51 (ENSSPAG00000018354)	ENSSPAG00000018397	tnfrsf1a (ENSSPAG00000018425)	IFFO1 (ENSSPAG00000018520)	opn9 (ENSSPAG00000018652)	CIART (ENSSPAG00000018709)	prpf3 (ENSSPAG00000018721)	ENSSPAG00000018809	ENSSPAG00000018825	ENSSPAG00000018887	ENSSPAG00000018934	CELF3 (ENSSPAG00000019028)	CERS2 (ENSSPAG00000019084) #22	arnt (ENSSPAG00000019126) #24
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976
P. nyererei	MODERN SPECIES	340	ENSPNYG00000004585	ENSPNYG00000004578	dap3 (ENSPNYG00000004551)	GBA1 (ENSPNYG00000004543)	rnf115a (ENSPNYG00000004530)	polr3c (ENSPNYG00000004504)	ITGA10 (ENSPNYG00000004429)	crabp2a (ENSPNYG00000004411)	ca14 (ENSPNYG00000004389) #30	CIART (ENSPNYG00000004366)	prpf3 (ENSPNYG00000004279)	RPRD2 (ENSPNYG00000004252)	ENSPNYG00000004232	ENSPNYG00000004203	CELF3 (ENSPNYG00000004167)	CERS2 (ENSPNYG00000004111) #22	arnt (ENSPNYG00000004092) #24	setdb1b (ENSPNYG00000003997)	clk2b (ENSPNYG00000003959)	rbp5 (ENSPNYG00000003932)	cyp11c1 (ENSPNYG00000003279)	pklr (ENSPNYG00000003190)	ENSPNYG00000003061	zbtb7b (ENSPNYG00000003031)	NDUFV1 (ENSPNYG00000002771)	khdc4 (ENSPNYG00000002718)	ENSPNYG00000002696	ENSPNYG00000002676	ENSPNYG00000002550	si:ch211-120k19.1 (ENSPNYG00000002526)	rpl18 (ENSPNYG00000002493)
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000165886.b	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838.d	ENSGT00390000012976
Eastern happy	MODERN SPECIES	2	ENSACLG00000019774	ENSACLG00000019798	dap3 (ENSACLG00000019804)	GBA1 (ENSACLG00000019877)	rnf115a (ENSACLG00000019901)	polr3c (ENSACLG00000019970)	ITGA10 (ENSACLG00000020004)	crabp2a (ENSACLG00000020063)	ca14 (ENSACLG00000020088) #30	CIART (ENSACLG00000020117)	prpf3 (ENSACLG00000020127)	RPRD2 (ENSACLG00000020253)	ENSACLG00000020262	ENSACLG00000020296	CELF3 (ENSACLG00000020342)	CERS2 (ENSACLG00000020370) #22	arnt (ENSACLG00000020427) #24	setdb1b (ENSACLG00000020489)	clk2b (ENSACLG00000020529)	rbp5 (ENSACLG00000020557)	ENSACLG00000020569	cyp11c1 (ENSACLG00000020574)	pklr (ENSACLG00000020605)	ENSACLG00000020658	zbtb7b (ENSACLG00000020686)	NDUFV1 (ENSACLG00000020692)	khdc4 (ENSACLG00000020720)	ENSACLG00000020772	KCNJ14 (ENSACLG00000020783)	ENSACLG00000020807	si:ch211-120k19.1 (ENSACLG00000020925)
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005015850	ENSMZEG00005015860	dap3 (ENSMZEG00005015864)	GBA1 (ENSMZEG00005015871)	rnf115a (ENSMZEG00005015878)	polr3c (ENSMZEG00005015882)	ITGA10 (ENSMZEG00005015917)	crabp2a (ENSMZEG00005015933)	ca14 (ENSMZEG00005015942) #30	CIART (ENSMZEG00005015953)	prpf3 (ENSMZEG00005015970)	RPRD2 (ENSMZEG00005015983)	ENSMZEG00005015989	ENSMZEG00005015998	CELF3 (ENSMZEG00005016013)	CERS2 (ENSMZEG00005016071) #22	arnt (ENSMZEG00005016081) #24	setdb1b (ENSMZEG00005016099)	clk2b (ENSMZEG00005016119)	rbp5 (ENSMZEG00005016127)	cyp11c1 (ENSMZEG00005016136)	pklr (ENSMZEG00005016142)	ENSMZEG00005016161	zbtb7b (ENSMZEG00005016168)	NDUFV1 (ENSMZEG00005016175)	khdc4 (ENSMZEG00005016190)	ENSMZEG00005016204	ENSMZEG00005016208	ENSMZEG00005016220	si:ch211-120k19.1 (ENSMZEG00005016251)	rpl18 (ENSMZEG00005016258)
Burton s mouthbrooder	MODERN SPECIES	770																CERS2 (ENSHBUG00000004562) #22	arnt (ENSHBUG00000004591) #24	setdb1b (ENSHBUG00000004618)	clk2b (ENSHBUG00000004682)	rbp5 (ENSHBUG00000004715)	cyp11c1 (ENSHBUG00000004786)	pklr (ENSHBUG00000004824)	ENSHBUG00000004831	zbtb7b (ENSHBUG00000004838)	NDUFV1 (ENSHBUG00000004873)	khdc4 (ENSHBUG00000004885)	ENSHBUG00000004898	ENSHBUG00000004930	ENSHBUG00000005049	si:ch211-120k19.1 (ENSHBUG00000005072)	rpl18 (ENSHBUG00000005115)
Lyretail cichlid	MODERN SPECIES	421	ENSNBRG00000003898	dap3 (ENSNBRG00000003880)	GBA1 (ENSNBRG00000003782)	rnf115a (ENSNBRG00000003743)	polr3c (ENSNBRG00000003707)	ITGA10 (ENSNBRG00000003630)	crabp2a (ENSNBRG00000003596)	ENSNBRG00000003588	ca14 (ENSNBRG00000003555) #30	ENSNBRG00000003513 #29	prpf3 (ENSNBRG00000003462)	ENSNBRG00000003446	ENSNBRG00000003429	ENSNBRG00000003412	CELF3 (ENSNBRG00000003364)	CERS2 (ENSNBRG00000003338) #22	arnt (ENSNBRG00000003317) #24	setdb1b (ENSNBRG00000003147)	clk2b (ENSNBRG00000003097)	rbp5 (ENSNBRG00000003077)	cyp11c1 (ENSNBRG00000003044)	pklr (ENSNBRG00000003002)	ENSNBRG00000002950	zbtb7b (ENSNBRG00000002939)	NDUFV1 (ENSNBRG00000002909)	khdc4 (ENSNBRG00000002786)	ENSNBRG00000002771	ENSNBRG00000002751	ENSNBRG00000002642	si:ch211-120k19.1 (ENSNBRG00000002613)	rpl18 (ENSNBRG00000002581)
Nile tilapia	MODERN SPECIES	2	ENSONIG00000028896	ENSONIG00000006351	dap3 (ENSONIG00000006354)	GBA1 (ENSONIG00000006359)	rnf115 (ENSONIG00000042941)	polr3c (ENSONIG00000006370)	ITGA10 (ENSONIG00000006374)	crabp2a (ENSONIG00000006388)	ca14 (ENSONIG00000006390) #30	CIART (ENSONIG00000032306)	prpf3 (ENSONIG00000006394)	RPRD2 (ENSONIG00000006400)	ENSONIG00000006402	ENSONIG00000006410	CELF3 (ENSONIG00000006421)	CERS2 (ENSONIG00000006425) #22	arnt (ENSONIG00000006431) #24	setdb1b (ENSONIG00000006454)	ENSONIG00000035023	clk2b (ENSONIG00000006457)	rbp5 (ENSONIG00000031419)	cyp11c1 (ENSONIG00000006462)	pklr (ENSONIG00000006474)	ENSONIG00000006481	zbtb7b (ENSONIG00000028677)	NDUFV1 (ENSONIG00000006484)	khdc4 (ENSONIG00000006487)	ENSONIG00000006491	ENSONIG00000041006	ENSONIG00000006492	si:ch211-120k19.1 (ENSONIG00000039620)
Midas cichlid	MODERN SPECIES	791	dap3 (ENSACIG00000008298)	GBA1 (ENSACIG00000008199)	rnf115a (ENSACIG00000008100)	polr3c (ENSACIG00000008064)	ITGA10 (ENSACIG00000008000)	crabp2a (ENSACIG00000007975)	ENSACIG00000007970	ca14 (ENSACIG00000007927) #30	ENSACIG00000007911 #29	prpf3 (ENSACIG00000007876)	ENSACIG00000007864	ENSACIG00000007828	ENSACIG00000007759	ENSACIG00000007730	CELF3 (ENSACIG00000007698)	CERS2 (ENSACIG00000007675) #22	arnt (ENSACIG00000007549) #24	setdb1b (ENSACIG00000007359)	clk2b (ENSACIG00000007329)	rbp5 (ENSACIG00000007317)	cyp11c1 (ENSACIG00000007289)	pklr (ENSACIG00000007258)	ENSACIG00000007213	zbtb7b (ENSACIG00000007192)	NDUFV1 (ENSACIG00000007163)	khdc4 (ENSACIG00000007120)	ENSACIG00000007108	ENSACIG00000007098	ENSACIG00000006989	si:ch211-120k19.1 (ENSACIG00000006948)	rpl18 (ENSACIG00000006925)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Climbing perch	MODERN SPECIES	7	ENSATEG00000023636	dap3 (ENSATEG00000023629)	ENSATEG00000023624	rnf115a (ENSATEG00000023621)	polr3c (ENSATEG00000023618)	ITGA10 (ENSATEG00000023613)	crabp2a (ENSATEG00000023607)	ENSATEG00000023603	ENSATEG00000023599 #30	CIART (ENSATEG00000029124)	ENSATEG00000023583	RPRD2 (ENSATEG00000023579)	ENSATEG00000023568	ENSATEG00000023565	ENSATEG00000023560	ENSATEG00000023554 #22	ENSATEG00000023530 #24	ENSATEG00000023520	clk2b (ENSATEG00000023506)	ENSATEG00000023362	pklr (ENSATEG00000023326)	ENSATEG00000023315	ENSATEG00000023301	ENSATEG00000029622	ENSATEG00000022961	ENSATEG00000022951	ENSATEG00000027391	ENSATEG00000022913	si:ch211-120k19.1 (ENSATEG00000022896)	rpl18 (ENSATEG00000022890)	ENSATEG00000022881
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000024433	dap3 (ENSBSLG00000024407)	GBA1 (ENSBSLG00000024067)	rnf115a (ENSBSLG00000024055)	polr3c (ENSBSLG00000024030)	ITGA10 (ENSBSLG00000023999)	ENSBSLG00000023995	crabp2a (ENSBSLG00000023990)	ca14 (ENSBSLG00000023965) #30	CIART (ENSBSLG00000023958)	prpf3 (ENSBSLG00000023892)	RPRD2 (ENSBSLG00000023861)	ENSBSLG00000023026	ADAMTSL4 (ENSBSLG00000022961)	CELF3 (ENSBSLG00000022896)	CERS2 (ENSBSLG00000022825) #22	arnt (ENSBSLG00000022577) #24	setdb1b (ENSBSLG00000022420)	ENSBSLG00000022373	clk2b (ENSBSLG00000022331)	ENSBSLG00000022183	cyp11c1 (ENSBSLG00000021763)	pklr (ENSBSLG00000021417)	ENSBSLG00000021380	ZBTB7B (ENSBSLG00000021370)	ENSBSLG00000021238	khdc4 (ENSBSLG00000021116)	ENSBSLG00000020978	KCNJ14 (ENSBSLG00000020936)	ENSBSLG00000019939	ENSBSLG00000019863
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000014682	ENSMAMG00000014691	ENSMAMG00000014708	rnf115a (ENSMAMG00000027527)	polr3c (ENSMAMG00000014770)	ITGA10 (ENSMAMG00000014814)	crabp2a (ENSMAMG00000025387)	ENSMAMG00000014912	ENSMAMG00000014923 #30	CIART (ENSMAMG00000014954)	ENSMAMG00000014968	RPRD2 (ENSMAMG00000015021)	ENSMAMG00000015032	ENSMAMG00000015054	ENSMAMG00000015079	ENSMAMG00000015125 #22	ENSMAMG00000015157 #24	ENSMAMG00000015176	clk2b (ENSMAMG00000015189)	ENSMAMG00000025575	cyp11c1 (ENSMAMG00000015245)	pklr (ENSMAMG00000019025)	ENSMAMG00000019112	ENSMAMG00000019119	ENSMAMG00000019130	ENSMAMG00000019148	ENSMAMG00000019158	ENSMAMG00000019167	ENSMAMG00000019178	si:ch211-120k19.1 (ENSMAMG00000025726)	rpl18 (ENSMAMG00000019271)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00390000011379	ENSGT00400000023815	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Seriola	ANCESTRAL SPECIES	28	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Greater amberjack	MODERN SPECIES	88	dap3 (ENSSDUG00000006478)	GBA1 (ENSSDUG00000006503)	rnf115a (ENSSDUG00000006528)	polr3c (ENSSDUG00000006590)	ITGA10 (ENSSDUG00000006650)	crabp2a (ENSSDUG00000006713)	ENSSDUG00000006722	ca14 (ENSSDUG00000006746) #30	CIART (ENSSDUG00000006818)	prpf3 (ENSSDUG00000006840)	ENSSDUG00000007143	RPRD2 (ENSSDUG00000007155)	ENSSDUG00000007180	ENSSDUG00000007219	CELF3 (ENSSDUG00000007239)	CERS2 (ENSSDUG00000007278) #22	arnt (ENSSDUG00000007319) #24	setdb1b (ENSSDUG00000007513)	clk2b (ENSSDUG00000007545)	cyp11c1 (ENSSDUG00000007605)	pklr (ENSSDUG00000007651)	ENSSDUG00000007688	zbtb7b (ENSSDUG00000007766)	NDUFV1 (ENSSDUG00000007778)	khdc4 (ENSSDUG00000007799)	ENSSDUG00000007819	KCNJ14 (ENSSDUG00000007833)	ENSSDUG00000007861	si:ch211-120k19.1 (ENSSDUG00000007939)	rpl18 (ENSSDUG00000007945)	ENSSDUG00000007958
Yellowtail amberjack	MODERN SPECIES	2521	ENSSLDG00000015713	dap3 (ENSSLDG00000015702)	GBA1 (ENSSLDG00000015679)	rnf115a (ENSSLDG00000015661)	polr3c (ENSSLDG00000015614)	ITGA10 (ENSSLDG00000015567)	crabp2a (ENSSLDG00000015550)	ENSSLDG00000015537	ca14 (ENSSLDG00000015501) #30	CIART (ENSSLDG00000015471)	prpf3 (ENSSLDG00000015423)	RPRD2 (ENSSLDG00000015396)	ENSSLDG00000015367	ENSSLDG00000015340	CELF3 (ENSSLDG00000015302)	CERS2 (ENSSLDG00000015279) #22	arnt (ENSSLDG00000015250) #24	setdb1b (ENSSLDG00000015209)	ENSSLDG00000015189	clk2b (ENSSLDG00000015146)	cyp11c1 (ENSSLDG00000015119)	pklr (ENSSLDG00000015078)	ENSSLDG00000015059	zbtb7b (ENSSLDG00000015043)	NDUFV1 (ENSSLDG00000015014)	khdc4 (ENSSLDG00000014999)	ENSSLDG00000014987	ENSSLDG00000014974	ENSSLDG00000014926	si:ch211-120k19.1 (ENSSLDG00000014897)	rpl18 (ENSSLDG00000014880)
Barramundi perch	MODERN SPECIES	185	ENSLCAG00010025169	dap3 (ENSLCAG00010025142)	GBA1 (ENSLCAG00010025081)	rnf115a (ENSLCAG00010025041)	polr3c (ENSLCAG00010025028)	ITGA10 (ENSLCAG00010024930)	crabp2a (ENSLCAG00010024874)	ENSLCAG00010024871	ca14 (ENSLCAG00010024866) #30	CIART (ENSLCAG00010024858)	prpf3 (ENSLCAG00010024818)	RPRD2 (ENSLCAG00010024785)	ENSLCAG00010024719	ENSLCAG00010024687	CELF3 (ENSLCAG00010024666)	CERS2 (ENSLCAG00010024661) #22	arnt (ENSLCAG00010024634) #24	setdb1b (ENSLCAG00010024595)	ENSLCAG00010024574	clk2b (ENSLCAG00010024568)	cyp11c1 (ENSLCAG00010024554)	pklr (ENSLCAG00010024465)	ENSLCAG00010024419	zbtb7b (ENSLCAG00010024415)	NDUFV1 (ENSLCAG00010024393)	khdc4 (ENSLCAG00010024376)	ENSLCAG00010024372	KCNJ14 (ENSLCAG00010024369)	ENSLCAG00010023843	si:ch211-120k19.1 (ENSLCAG00010023644)	rpl18 (ENSLCAG00010023638)
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Tongue sole	MODERN SPECIES	4	ENSCSEG00000002383	dap3 (ENSCSEG00000002386)	GBA1 (ENSCSEG00000002392)	rnf115a (ENSCSEG00000002414)	polr3c (ENSCSEG00000002425)	ITGA10 (ENSCSEG00000002443)	crabp2a (ENSCSEG00000002466)	ENSCSEG00000002472	ca14 (ENSCSEG00000002477) #30	CIART (ENSCSEG00000002522)	prpf3 (ENSCSEG00000002532)	RPRD2 (ENSCSEG00000002555)	ENSCSEG00000002562	ENSCSEG00000002578	CELF3 (ENSCSEG00000002581)	CERS2 (ENSCSEG00000002591) #22	arnt (ENSCSEG00000002962) #24	ENSCSEG00000002976	setdb1b (ENSCSEG00000002988)	ENSCSEG00000003063	clk2b (ENSCSEG00000003066)	cyp11c1 (ENSCSEG00000003112)	pklr (ENSCSEG00000003394)	ENSCSEG00000003427	zbtb7b (ENSCSEG00000003439)	khdc4 (ENSCSEG00000003443)	ENSCSEG00000003478	ENSCSEG00000003488	ENSCSEG00000003501	si:ch211-120k19.1 (ENSCSEG00000003523)	ENSCSEG00000003527
Turbot	MODERN SPECIES		ENSSMAG00000036592	dap3 (ENSSMAG00000016184)	rnf115a (ENSSMAG00000016084)	polr3c (ENSSMAG00000016000)	ITGA10 (ENSSMAG00000015935)	ENSSMAG00000030369	ENSSMAG00000015902	ENSSMAG00000015835 #30	CIART (ENSSMAG00000015791)	ENSSMAG00000015739	ENSSMAG00000030192	RPRD2 (ENSSMAG00000025690)	ENSSMAG00000015682	ENSSMAG00000015652	ENSSMAG00000015634	ENSSMAG00000015501 #22	ENSSMAG00000015418 #24	ENSSMAG00000015398	clk2b (ENSSMAG00000015365)	ENSSMAG00000014255	pklr (ENSSMAG00000014175)	ENSSMAG00000014167	ENSSMAG00000014148	ENSSMAG00000014119	ENSSMAG00000014077	ENSSMAG00000014066	ENSSMAG00000014045	ENSSMAG00000014036	ENSSMAG00000013502	si:ch211-120k19.1 (ENSSMAG00000013428)	rpl18 (ENSSMAG00000013409)
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820	ENSGT00940000165838
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00940000157383.g.b	ENSGT00940000156657	ENSGT00940000166290	ENSGT00440000033697	ENSGT00940000157871.h.a	ENSGT00940000156612	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000157011	ENSGT00940000156594	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00390000011379	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000169692	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00970000193820
Tetraodon	MODERN SPECIES	23	ENSTNIG00000008049	CLCN1 (ENSTNIG00000008050)	casp2 (ENSTNIG00000008051)	ENSTNIG00000008052	gstk1 (ENSTNIG00000001719)	styk1b (ENSTNIG00000008053)	ENSTNIG00000008054	crabp2a (ENSTNIG00000008055)	ca14 (ENSTNIG00000008056) #30	ENSTNIG00000008057 #29	prpf3 (ENSTNIG00000008058)	ENSTNIG00000008059	ENSTNIG00000008060	ENSTNIG00000008061	CELF3 (ENSTNIG00000008062)	CERS2 (ENSTNIG00000008063) #22	arnt (ENSTNIG00000008064) #24	setdb1b (ENSTNIG00000008065)	ENSTNIG00000008066	clk2b (ENSTNIG00000008067)	cyp11c1 (ENSTNIG00000008068)	pklr (ENSTNIG00000008069)	ENSTNIG00000008070	zbtb7b (ENSTNIG00000008071)	khdc4 (ENSTNIG00000008072)	ENSTNIG00000008073	KCNJ14 (ENSTNIG00000008074)	ENSTNIG00000008075	rpl18 (ENSTNIG00000008076)	SPHK2 (ENSTNIG00000008077)	CYTH2 (ENSTNIG00000008078)
Fugu	MODERN SPECIES	19	crabp2a (ENSTRUG00000031837)	ENSTRUG00000026697 #30	prpf3 (ENSTRUG00000033026)	ENSTRUG00000015004	gstk1 (ENSTRUG00000014778)	styk1b (ENSTRUG00000028828)	phc1 (ENSTRUG00000031572)	crabp2a (ENSTRUG00000014873)	ca14 (ENSTRUG00000014893) #30	CIART (ENSTRUG00000032482)	prpf3 (ENSTRUG00000014923)	RPRD2 (ENSTRUG00000023474)	ENSTRUG00000029268	ENSTRUG00000014189	CELF3 (ENSTRUG00000014225)	CERS2 (ENSTRUG00000014385) #22	arnt (ENSTRUG00000014504) #24	setdb1b (ENSTRUG00000014641)	ENSTRUG00000026274	cyp11c1 (ENSTRUG00000014845)	pklr (ENSTRUG00000014910)	zbtb7b (ENSTRUG00000031262)	NDUFV1 (ENSTRUG00000032214)	ENSTRUG00000015115	ENSTRUG00000029166	ENSTRUG00000029074	ENSTRUG00000015194	ENSTRUG00000030991	si:ch211-120k19.1 (ENSTRUG00000015593)	rpl18 (ENSTRUG00000015604)	SPHK2 (ENSTRUG00000015629)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Ballan wrasse	MODERN SPECIES	97	ENSLBEG00000026666	dap3 (ENSLBEG00000026641)	GBA1 (ENSLBEG00000026624)	rnf115a (ENSLBEG00000026606)	polr3c (ENSLBEG00000026567)	ITGA10 (ENSLBEG00000026514)	crabp2a (ENSLBEG00000026486)	ENSLBEG00000026474	ca14 (ENSLBEG00000026406) #30	CIART (ENSLBEG00000026371)	prpf3 (ENSLBEG00000026310)	RPRD2 (ENSLBEG00000026261)	ENSLBEG00000026238	ENSLBEG00000026210	CELF3 (ENSLBEG00000026140)	CERS2 (ENSLBEG00000026082) #22	arnt (ENSLBEG00000026037) #24	setdb1b (ENSLBEG00000025862)	ENSLBEG00000025807	clk2b (ENSLBEG00000025773)	cyp11c1 (ENSLBEG00000025730)	pklr (ENSLBEG00000025690)	ENSLBEG00000025667	zbtb7b (ENSLBEG00000025578)	NDUFV1 (ENSLBEG00000025548)	khdc4 (ENSLBEG00000025524)	ENSLBEG00000025510	ENSLBEG00000025488	ENSLBEG00000025408	si:ch211-120k19.1 (ENSLBEG00000025378)	rpl18 (ENSLBEG00000025339)
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00900000141033.b.b	ENSGT00940000156698.d	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT01030000234784	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000174801	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Large yellow croaker	MODERN SPECIES	484	ENSLCRG00005008803	dap3 (ENSLCRG00005008373)	GBA1 (ENSLCRG00005008261)	rnf115a (ENSLCRG00005008231)	polr3c (ENSLCRG00005008200)	ITGA10 (ENSLCRG00005008129)	crabp2a (ENSLCRG00005008118)	ENSLCRG00005008115	ca14 (ENSLCRG00005008112) #30	ENSLCRG00005008109 #29	prpf3 (ENSLCRG00005008101)	ENSLCRG00005008092	ENSLCRG00005006911	ENSLCRG00005006884	CELF3 (ENSLCRG00005006865)	CERS2 (ENSLCRG00005006848) #22	arnt (ENSLCRG00005006183) #24	setdb1b (ENSLCRG00005005494)	cyp11c1 (ENSLCRG00005005457)	pklr (ENSLCRG00005005411)	ENSLCRG00005005399	zbtb7b (ENSLCRG00005005396)	NDUFV1 (ENSLCRG00005005054)	khdc4 (ENSLCRG00005005048)	ENSLCRG00005005047	ENSLCRG00005005046	ENSLCRG00005005045	ENSLCRG00005005043	si:ch211-120k19.1 (ENSLCRG00005005041)	rpl18 (ENSLCRG00005005039)	ENSLCRG00005005038
Perciformes	ANCESTRAL SPECIES	3	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00940000164936.a #29	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976
Lumpfish	MODERN SPECIES	7	ENSCLMG00005002063	ENSCLMG00005002067	dap3 (ENSCLMG00005002077)	GBA1 (ENSCLMG00005002138)	rnf115a (ENSCLMG00005002402)	polr3c (ENSCLMG00005002406)	ITGA10 (ENSCLMG00005002630)	crabp2a (ENSCLMG00005002635)	ca14 (ENSCLMG00005002637) #30	ENSCLMG00005002641 #29	prpf3 (ENSCLMG00005002646)	ENSCLMG00005002666	ENSCLMG00005002688	ENSCLMG00005008803	CELF3 (ENSCLMG00005008804)	CERS2 (ENSCLMG00005008805) #22	arnt (ENSCLMG00005008812) #24	setdb1b (ENSCLMG00005010098)	clk2b (ENSCLMG00005010167)	cyp11c1 (ENSCLMG00005010177)	pklr (ENSCLMG00005010199)	ENSCLMG00005010269	zbtb7b (ENSCLMG00005010275)	NDUFV1 (ENSCLMG00005010282)	khdc4 (ENSCLMG00005010289)	ENSCLMG00005010350	ENSCLMG00005010352	ENSCLMG00005010494	si:ch211-120k19.1 (ENSCLMG00005020202)	rpl18 (ENSCLMG00005020204)	ENSCLMG00005020207
Stickleback	MODERN SPECIES	19	ENSGACG00000011917	fdps (ENSGACG00000011874)	ENSGACG00000011873	dap3 (ENSGACG00000011859)	GBA1 (ENSGACG00000011848)	rnf115a (ENSGACG00000011841)	polr3c (ENSGACG00000011829)	ITGA10 (ENSGACG00000011820)	crabp2a (ENSGACG00000011813)	ca14 (ENSGACG00000011803) #30	prpf3 (ENSGACG00000011792)	ENSGACG00000011789	ENSGACG00000011734	ENSGACG00000011722	CELF3 (ENSGACG00000011707)	CERS2 (ENSGACG00000011695) #22	arnt (ENSGACG00000011686) #24	setdb1b (ENSGACG00000011675)	ENSGACG00000011670	clk2b (ENSGACG00000011669)	ENSGACG00000011666	cyp11c1 (ENSGACG00000011657)	pklr (ENSGACG00000011641)	ENSGACG00000011639	zbtb7b (ENSGACG00000011635)	khdc4 (ENSGACG00000011621)	ENSGACG00000011620	ENSGACG00000011616	ENSGACG00000011600	si:ch211-120k19.1 (ENSGACG00000011594)	rpl18 (ENSGACG00000011547)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00900000141074	ENSGT00900000141033.b.b	ENSGT00940000174526	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000154947.l	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b.d	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838	ENSGT00390000012976	ENSGT00940000161197.j
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000006549	dap3 (ENSCGOG00000006143)	GBA1 (ENSCGOG00000005999)	rnf115a (ENSCGOG00000005990)	polr3c (ENSCGOG00000005762)	ITGA10 (ENSCGOG00000005744)	crabp2a (ENSCGOG00000005736)	ca14 (ENSCGOG00000005720) #30	CIART (ENSCGOG00000005717)	prpf3 (ENSCGOG00000005098)	ENSCGOG00000005088	ENSCGOG00000005086	ENSCGOG00000004683	ENSCGOG00000004667	CELF3 (ENSCGOG00000003981)	CERS2 (ENSCGOG00000003927) #22	arnt (ENSCGOG00000002983) #24	setdb1b (ENSCGOG00000002878)	clk2b (ENSCGOG00000002513)	cyp11c1 (ENSCGOG00000002436)	pklr (ENSCGOG00000002409)	ENSCGOG00000002358	zbtb7b (ENSCGOG00000002355)	NDUFV1 (ENSCGOG00000001787)	khdc4 (ENSCGOG00000001720)	ENSCGOG00000001715	ENSCGOG00000001620	ENSCGOG00000019495	si:ch211-120k19.1 (ENSCGOG00000019466)	rpl18 (ENSCGOG00000019459)	ENSCGOG00000019457
Pike perch	MODERN SPECIES	15	ENSSLUG00000005273	ENSSLUG00000005291	dap3 (ENSSLUG00000005359)	GBA1 (ENSSLUG00000005653)	rnf115a (ENSSLUG00000005724)	polr3c (ENSSLUG00000005739)	ITGA10 (ENSSLUG00000005771)	crabp2a (ENSSLUG00000005867)	ca14 (ENSSLUG00000005873) #30	ENSSLUG00000005895	prpf3 (ENSSLUG00000005921)	ENSSLUG00000005975	ENSSLUG00000006094	ENSSLUG00000008552	CELF3 (ENSSLUG00000008730)	CERS2 (ENSSLUG00000008735) #22	ENSSLUG00000008743	arnt (ENSSLUG00000008830) #24	setdb1b (ENSSLUG00000010791)	clk2b (ENSSLUG00000011632)	cyp11c1 (ENSSLUG00000012330)	pklr (ENSSLUG00000012509)	ENSSLUG00000014327	zbtb7b (ENSSLUG00000014404)	NDUFV1 (ENSSLUG00000014418)	khdc4 (ENSSLUG00000014601)	ENSSLUG00000014607	ENSSLUG00000014612	MYH14 (ENSSLUG00000014628)	si:ch211-120k19.1 (ENSSLUG00000014744)	rpl18 (ENSSLUG00000014754)
Cod	MODERN SPECIES	2	ENSGMOG00000025713	ENSGMOG00000015638	mlf2 (ENSGMOG00000015661)	cdc42l (ENSGMOG00000015685)	wnt4b (ENSGMOG00000015702)	ENSGMOG00000015722	ptpn6 (ENSGMOG00000015780)	rbp5 (ENSGMOG00000015812)	ENSGMOG00000026565	ENSGMOG00000033939	c1r (ENSGMOG00000015841)	ENSGMOG00000032831	ENSGMOG00000006214	ENSGMOG00000006184	ENSGMOG00000006107	ENSGMOG00000006087 #22	ENSGMOG00000006058 #24	ENSGMOG00000005993	ENSGMOG00000022689	clk2b (ENSGMOG00000005932)	ENSGMOG00000005891	pklr (ENSGMOG00000005863)	ENSGMOG00000005846	ENSGMOG00000033220	ENSGMOG00000005710	ENSGMOG00000005673	ENSGMOG00000005657	ENSGMOG00000005645	ENSGMOG00000005568	si:ch211-120k19.1 (ENSGMOG00000005544)	rpl18 (ENSGMOG00000005521)
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00940000161506	ENSGT00390000008859.b.c	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00940000164374.A.l	ENSGT00940000157471.a	ENSGT00940000156893 #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00940000177218	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716.gc.a	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423	ENSGT00390000002799	ENSGT00940000157203.c	ENSGT00390000009464	ENSGT00390000004989.b	ENSGT00390000015248	ENSGT00940000156698.d	ENSGT00900000141033.b.b	ENSGT00900000141074	ENSGT00530000063335.B.a.a.b	ENSGT00940000159989	ENSGT00950000182891.b.a.b
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.a.f.i.a #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	6518																CERS2 (ENSHHUG00000003711) #22	arnt (ENSHHUG00000003766) #24
Huchen	MODERN SPECIES	3773														FRAS1 (ENSHHUG00000041609)	ENSHHUG00000041740	ENSHHUG00000041744 #22
Salmoninae_a	ANCESTRAL SPECIES	89	ENSGT00940000158808.lb.a	ENSGT01030000234586.B.a.b.g.a	ENSGT00940000160074.f	ENSGT00940000161197.i.b	ENSGT00390000012976.o.b	ENSGT00940000158808.mb	ENSGT01030000234586.B.a.b.h	ENSGT00940000159286.a.b.d	ENSGT00510000047412.a.b	ENSGT00940000154947.l	ENSGT00940000161506.f	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT01030000234515.a.b.a.a.f.i.a #22	ENSGT00940000157585 #24	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.n	ENSGT00390000002799.c.b	ENSGT00940000158423.m	ENSGT00390000002799.d	ENSGT00940000157203.c	ENSGT00390000009464.e.a	ENSGT00390000004989.b	ENSGT00390000009464.e.b.b	ENSGT00390000015248.c.b.b	ENSGT00940000156698.d	ENSGT00900000141033.b.b	ENSGT00900000141074
Oncorhynchus	ANCESTRAL SPECIES	62	ENSGT00940000165838.g	ENSGT00940000158808.lb.a	ENSGT01030000234586.B.a.b.g.a.b	ENSGT00940000158808.lb.b	ENSGT01030000234586.B.a.b.g.a.a	ENSGT00940000159286.a.b.d	ENSGT00510000047412.a.a	ENSGT00940000154947.l.b	ENSGT00940000161506.e	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.b	ENSGT00390000008859.b.c.i.b	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT01030000234515.a.b.a.a.f.i.a #22	ENSGT00940000157585 #24	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.m.d	ENSGT00940000158423.m.c	ENSGT00390000002799.d	ENSGT00940000157203.c	ENSGT00390000009464.f	ENSGT00390000004989.b	ENSGT00390000015248.c.b.b.c.b	ENSGT00390000009464.e.a	ENSGT00390000015248.c.b.b.c.a	ENSGT00940000156698.d.e	ENSGT00900000141033.b.b	ENSGT00900000141074
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.a.f.i.a #22
Coho salmon	MODERN SPECIES	11	ZBTB7B (ENSOKIG00005001588)	ENSOKIG00005001581	NDUFV1 (ENSOKIG00005001550)	SETDB1 (ENSOKIG00005001468)	ENSOKIG00005001431	ca14 (ENSOKIG00005001426) #30	ENSOKIG00005001422 #29	prpf3 (ENSOKIG00005001403)	ENSOKIG00005001395	ENSOKIG00005001393	ENSOKIG00005001205	ENSOKIG00005001131	ENSOKIG00005001124	ENSOKIG00005001119	ENSOKIG00005001113	CERS2 (ENSOKIG00005001110) #22	ARNT (ENSOKIG00005001010) #24	ENSOKIG00005000959	ITGA10 (ENSOKIG00005000888)	polr3c (ENSOKIG00005000854)	rnf115a (ENSOKIG00005000844)	ENSOKIG00005000826	ENSOKIG00005000818	dap3 (ENSOKIG00005000813)	ENSOKIG00005000810	ENSOKIG00005000806	dap3 (ENSOKIG00005000789)	dap3 (ENSOKIG00005000696)	ENSOKIG00005000626	fdps (ENSOKIG00005000578)	ENSOKIG00005000533
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.a.f.i.b.a #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.a.f.i.b.a #22
Oncorhynchus	ANCESTRAL SPECIES	493															ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.i.b.a #22
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000000401	ENSOMYG00000000936	ENSOMYG00000058718	ENSOMYG00000054999	ENSOMYG00000074213	ENSOMYG00000000883	ENSOMYG00000000802	ENSOMYG00000077358 #30	CIART (ENSOMYG00000000738)	ENSOMYG00000000719	RPRD2 (ENSOMYG00000000645)	ENSOMYG00000000639	ENSOMYG00000065942	ENSOMYG00000063165	ENSOMYG00000053266	ENSOMYG00000052016 #22	ENSOMYG00000025402 #24	ITGA10 (ENSOMYG00000056132)	polr3c (ENSOMYG00000000589)	rnf115a (ENSOMYG00000000557)	ENSOMYG00000062477	dap3 (ENSOMYG00000000989)	ENSOMYG00000002525	ENSOMYG00000040268	dap3 (ENSOMYG00000002465)	ENSOMYG00000001123	dap3 (ENSOMYG00000001940)	ENSOMYG00000066954	ENSOMYG00000000803	ENSOMYG00000062525	ENSOMYG00000000788
Oncorhynchus_a	ANCESTRAL SPECIES	91	ENSGT00940000154947.l.b	ENSGT00940000161506.e	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.b	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.d	ENSGT00940000164374.A.l.b	ENSGT00940000157471.a	ENSGT00940000156893.`b.a #30	ENSGT00390000018360.a	ENSGT00390000011497.h	ENSGT00950000183094.a.m.d	ENSGT00940000159348.l.a.a.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.i.b.a #22	ENSGT00940000157585 #24	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.m.c	ENSGT00390000002799.d.a	ENSGT00940000157203.c	ENSGT00390000009464.e.a	ENSGT00390000015248.c.b.b.c.a	ENSGT00940000156698.d.e	ENSGT00900000141033.b.b	ENSGT00900000141074	ENSGT00530000063335.B.a.a.a.a	ENSGT00940000159989.u	ENSGT00390000009491.c.s.b	ENSGT00950000182891.b.a.b.b.a
Coho salmon	MODERN SPECIES	4	clk2b (ENSOKIG00005035118)	cyp11c1 (ENSOKIG00005035352)	pklr (ENSOKIG00005036130)	ENSOKIG00005038985	ENSOKIG00005039020	NDUFV1 (ENSOKIG00005039164)	zbtb7b (ENSOKIG00005039256)	trim108 (ENSOKIG00005039269)	setdb1b (ENSOKIG00005039364)	ENSOKIG00005040259 #30	CIART (ENSOKIG00005040281)	ENSOKIG00005040308	RPRD2 (ENSOKIG00005040488)	ENSOKIG00005040601	CELF3 (ENSOKIG00005041453)	CERS2 (ENSOKIG00005041548) #22	arnt (ENSOKIG00005041615) #24	ENSOKIG00005041724	crabp2a (ENSOKIG00005041738)	ENSOKIG00005041755	ITGA10 (ENSOKIG00005041776)	polr3c (ENSOKIG00005041919)	rnf115a (ENSOKIG00005041962)	GBA1 (ENSOKIG00005042013)	dap3 (ENSOKIG00005042271)	ENSOKIG00005042469	ENSOKIG00005042490	ENSOKIG00005042498	fdps (ENSOKIG00005042522)	ENSOKIG00005042646	rab13 (ENSOKIG00005042668)
Salmoninae	ANCESTRAL SPECIES	1668															ENSGT00940000154716.gc.a.g.a.a	ENSGT01030000234515.a.b.a.a.f.i.b.b #22
Salmoninae_a	ANCESTRAL SPECIES	599															ENSGT00940000154716.gc.a.g.a.a	ENSGT01030000234515.a.b.a.a.f.i.b.b #22
Oncorhynchus	ANCESTRAL SPECIES	268													ENSGT00940000159348.l.a.a.a	ENSGT00940000161136.h.b	ENSGT00940000154716.gc.a.g.a.a	ENSGT01030000234515.a.b.a.a.f.i.b.b #22
Rainbow trout	MODERN SPECIES	11	pklr (ENSOMYG00000000259)	ENSOMYG00000000212	ENSOMYG00000000179	ENSOMYG00000000135	ENSOMYG00000074419	ENSOMYG00000068559	ENSOMYG00000005509	ENSOMYG00000005324	ENSOMYG00000005055 #30	ENSOMYG00000004943	ENSOMYG00000004840	RPRD2 (ENSOMYG00000004723)	ENSOMYG00000004621	ENSOMYG00000061678	ENSOMYG00000077550	ENSOMYG00000025358 #22	arnt (ENSOMYG00000004218) #24	ENSOMYG00000003951	crabp2a (ENSOMYG00000054803)	ENSOMYG00000050019	ITGA10 (ENSOMYG00000062913)	polr3c (ENSOMYG00000002374)	rnf115a (ENSOMYG00000002292)	ENSOMYG00000002171	ENSOMYG00000065435	dap3 (ENSOMYG00000038844)	ENSOMYG00000056334	ENSOMYG00000077518	FDPS (ENSOMYG00000065726)	ENSOMYG00000066250	rab13 (ENSOMYG00000057150)
Huchen	MODERN SPECIES	7513																CERS2 (ENSHHUG00000003857) #22	ENSHHUG00000003823 #24
Salmoninae	ANCESTRAL SPECIES	230					ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a	ENSGT00940000156893.`b.a #30	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m.d	ENSGT00940000159348.l.a	ENSGT00940000161136.h	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.g.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j #22	ENSGT00940000157585 #24	ENSGT01030000234784	ENSGT00940000157619.a.a	ENSGT00940000158423.n	ENSGT00390000002799.c.b	ENSGT00940000158423.m	ENSGT00390000002799.d	ENSGT00940000157203.c	ENSGT00390000009464.e.a	ENSGT00390000004989.b	ENSGT00390000009464.e.b.b	ENSGT00390000015248.c.b.b	ENSGT00940000156698.d	ENSGT00900000141033.b.b	ENSGT00900000141074
Salmoninae_a	ANCESTRAL SPECIES	184					ENSGT00940000164374.A.l.b	ENSGT00940000157471.a	ENSGT00940000156893.`b.a #30	ENSGT00390000018360.a	ENSGT00390000011497.h	ENSGT00950000183094.a.m.d	ENSGT00940000159348.l.a	ENSGT00940000161136.h	ENSGT00940000154716.gc.a.g.a.b	ENSGT00940000161136.g.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j #22
Salmo	DUPLICATION
Salmo	ANCESTRAL SPECIES	93	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT00390000011497.h	ENSGT00950000183094.a.m.c	ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a	ENSGT00940000156893.`b.a #30	ENSGT00390000018360.a	ENSGT00390000011497.g	ENSGT00950000183094.a.m.d	ENSGT00940000159348.l.a	ENSGT00940000161136.g.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j.b #22	ENSGT00940000157585.d #24	ENSGT01030000234515.a.b.a.a.f.j.a #22	ENSGT00940000157585.c #24	ENSGT01030000234784	ENSGT00940000157619.a.a.e	ENSGT00970000197937.B	ENSGT00970000197937.A	ENSGT00390000015248.c.b.b.b	ENSGT00940000156698.d	ENSGT00900000141033.b.b	ENSGT00900000141074.gb	ENSGT00530000063335.B.a.a.b	ENSGT00940000159989.v.b	ENSGT00950000182891.b.a.b.a	ENSGT00390000009491.c.s.b	ENSGT00390000009491.c.s.a	ENSGT00950000182904.a.a.a.a.p
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000101361	ENSSSAG00000085935	ENSSSAG00000086337	ENSSSAG00000005206	ENSSSAG00000040011	ENSSSAG00000084036	ENSSSAG00000050586 #30	CIART (ENSSSAG00000120551)	ENSSSAG00000050737	RPRD2 (ENSSSAG00000005473)	ENSSSAG00000005496	ENSSSAG00000090396	ENSSSAG00000060546	ENSSSAG00000065111	ENSSSAG00000116457	ENSSSAG00000059839 #22	ENSSSAG00000081758 #24	crabp2a (ENSSSAG00000082499)	polr3c (ENSSSAG00000005255)	ENSSSAG00000115950	rnf115a (ENSSSAG00000005342)	ENSSSAG00000099611	ENSSSAG00000087453	ENSSSAG00000086072	dap3 (ENSSSAG00000005363)	ENSSSAG00000106544	ENSSSAG00000094933	ENSSSAG00000008020	ENSSSAG00000098643	ENSSSAG00000086818	ENSSSAG00000007965
River trout	MODERN SPECIES	30	ENSSTUG00000037998	ENSSTUG00000038045	dap3 (ENSSTUG00000038112)	ENSSTUG00000038717	ENSSTUG00000038736	ENSSTUG00000038761	ENSSTUG00000038985	rnf115a (ENSSTUG00000038988)	polr3c (ENSSTUG00000039006)	ITGA10 (ENSSTUG00000039092)	crabp2a (ENSSTUG00000039501)	ENSSTUG00000039519	arnt (ENSSTUG00000039545) #24	CERS2 (ENSSTUG00000039665) #22	CELF3 (ENSSTUG00000039686)	CERS2 (ENSSTUG00000039706) #22	arnt (ENSSTUG00000039732) #24	ENSSTUG00000039843	ITGA10 (ENSSTUG00000039883)	polr3c (ENSSTUG00000040136)	rnf115a (ENSSTUG00000040508)	ENSSTUG00000040763	ENSSTUG00000040875	dap3 (ENSSTUG00000040915)	ENSSTUG00000041590	ENSSTUG00000041621	fdps (ENSSTUG00000041654)	ENSSTUG00000041868	rab13 (ENSSTUG00000041909)	ENSSTUG00000041934	KCNN3 (ENSSTUG00000042076)
Salmo	ANCESTRAL SPECIES	93	ENSGT00390000008859.b.c.i.a	ENSGT00940000154743.A.a.a.k.a	ENSGT00940000160219	ENSGT00390000010641.i.a.c.b	ENSGT00390000011497.h	ENSGT00950000183094.a.m.c	ENSGT00940000164374.A.l.a.a	ENSGT00940000157471.a	ENSGT00940000156893.`b.a #30	ENSGT00390000018360.a	ENSGT00390000011497.g	ENSGT00950000183094.a.m.d	ENSGT00940000159348.l.a	ENSGT00940000161136.g.a	ENSGT00940000154716.gc.a.h	ENSGT01030000234515.a.b.a.a.f.j.b #22	ENSGT00940000157585.d #24	ENSGT01030000234515.a.b.a.a.f.j.a #22	ENSGT00940000157585.c #24	ENSGT01030000234784	ENSGT00940000157619.a.a.e	ENSGT00970000197937.B	ENSGT00970000197937.A	ENSGT00390000015248.c.b.b.b	ENSGT00940000156698.d	ENSGT00900000141033.b.b	ENSGT00900000141074.gb	ENSGT00530000063335.B.a.a.b	ENSGT00940000159989.v.b	ENSGT00950000182891.b.a.b.a	ENSGT00390000009491.c.s.b
Atlantic salmon	MODERN SPECIES	11	clk2b (ENSSSAG00000041272)	ENSSSAG00000036512	pklr (ENSSSAG00000003928)	ENSSSAG00000083211	ENSSSAG00000116573	ENSSSAG00000107138	ENSSSAG00000099999	ENSSSAG00000094688	ENSSSAG00000050118	ENSSSAG00000005168 #30	ENSSSAG00000113441	PRPF3 (ENSSSAG00000121892)	ENSSSAG00000050867	ENSSSAG00000119214	ENSSSAG00000105110	ENSSSAG00000114447 #22	ENSSSAG00000005601 #24	rabp (ENSSSAG00000045726)	ITGA10 (ENSSSAG00000119547)	polr3c (ENSSSAG00000006875)	rnf115a (ENSSSAG00000101171)	ENSSSAG00000111661	asal (ENSSSAG00000005307)	dap3 (ENSSSAG00000057489)	ENSSSAG00000116239	fdps (ENSSSAG00000005943)	ENSSSAG00000101786	rab13 (ENSSSAG00000092421)	ENSSSAG00000006134	ENSSSAG00000083944	ENSSSAG00000006245
River trout	MODERN SPECIES	30	rab13 (ENSSTUG00000041909)	ENSSTUG00000041868	fdps (ENSSTUG00000041654)	ENSSTUG00000041621	ENSSTUG00000041590	dap3 (ENSSTUG00000040915)	ENSSTUG00000040875	ENSSTUG00000040763	rnf115a (ENSSTUG00000040508)	polr3c (ENSSTUG00000040136)	ITGA10 (ENSSTUG00000039883)	ENSSTUG00000039843	arnt (ENSSTUG00000039732) #24	CERS2 (ENSSTUG00000039706) #22	CELF3 (ENSSTUG00000039686)	CERS2 (ENSSTUG00000039665) #22	arnt (ENSSTUG00000039545) #24	ENSSTUG00000039519	crabp2a (ENSSTUG00000039501)	ITGA10 (ENSSTUG00000039092)	polr3c (ENSSTUG00000039006)	rnf115a (ENSSTUG00000038988)	ENSSTUG00000038985	ENSSTUG00000038761	ENSSTUG00000038736	ENSSTUG00000038717	dap3 (ENSSTUG00000038112)	ENSSTUG00000038045	ENSSTUG00000037998	fdps (ENSSTUG00000037851)	ENSSTUG00000037830
Northern pike	MODERN SPECIES	19	ENSELUG00000014342	khdc4 (ENSELUG00000014317)	cyp11c1 (ENSELUG00000014194)	pklr (ENSELUG00000014172)	ENSELUG00000001418	zbtb7b (ENSELUG00000014058)	NDUFV1 (ENSELUG00000014045)	setdb1b (ENSELUG00000013948)	ca14 (ENSELUG00000013739) #30	ENSELUG00000013661 #29	prpf3 (ENSELUG00000013624)	RPRD2 (ENSELUG00000013579)	ENSELUG00000013552	ENSELUG00000013504	CELF3 (ENSELUG00000013477)	CERS2 (ENSELUG00000013435) #22	arnt (ENSELUG00000013390) #24	ENSELUG00000013307	ENSELUG00000013287	ITGA10 (ENSELUG00000013251)	polr3c (ENSELUG00000013209)	rnf115a (ENSELUG00000013123)	GBA1 (ENSELUG00000013090)	ENSELUG00000013061	dap3 (ENSELUG00000000477)	ENSELUG00000012966	ENSELUG00000012945	fdps (ENSELUG00000012905)	ENSELUG00000012835	rab13 (ENSELUG00000012801)	RS27 (ENSELUG00000031053)
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00900000141033.b.b	ENSGT00940000156698.a	ENSGT00390000015248	ENSGT00390000009464	ENSGT00940000157203.c	ENSGT00390000002799	ENSGT00940000158423	ENSGT00940000157619.a.a	ENSGT00940000166610	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183094.a.m	ENSGT00940000159348	ENSGT00940000161136	ENSGT00940000154716	ENSGT01030000234515.a.b.a.a.f #22	ENSGT00940000157585 #24	ENSGT00940000157471.a	ENSGT00940000164374.A	ENSGT00940000154947.k	ENSGT01060000248708	ENSGT00940000161506	ENSGT00390000008859.b.c.k	ENSGT00940000154743.A.a.a	ENSGT00940000160219	ENSGT00390000010641.i.a	ENSGT00510000047412.a	ENSGT00940000159286.a.b	ENSGT01030000234586.B.a.b	ENSGT00940000158808	ENSGT00940000165838
Asian bonytongue	MODERN SPECIES	9	ash1l (ENSSFOG00015021808)	dap3 (ENSSFOG00015021822)	GBA1 (ENSSFOG00015021833)	rnf115a (ENSSFOG00015021845)	polr3c (ENSSFOG00015021863)	ITGA10 (ENSSFOG00015021906)	crabp2a (ENSSFOG00015021942)	ca14 (ENSSFOG00015021971) #30	ENSSFOG00015021982	CIART (ENSSFOG00015021990)	prpf3 (ENSSFOG00015022014)	RPRD2 (ENSSFOG00015022056)	ENSSFOG00015022086	ENSSFOG00015022109	celf3a (ENSSFOG00015022130)	CERS2 (ENSSFOG00015030046) #22	arnt (ENSSFOG00015022161) #24	setdb1b (ENSSFOG00015022183)	trim108 (ENSSFOG00015022196)	ENSSFOG00015031896	clk2a (ENSSFOG00015022213)	ENSSFOG00015022224	cyp11c1 (ENSSFOG00015022229)	pklr (ENSSFOG00015022235)	ENSSFOG00015022252	zbtb7b (ENSSFOG00015030270)	NDUFV1 (ENSSFOG00015022273)	khdc4 (ENSSFOG00015022282)	ENSSFOG00015022296	ENSSFOG00015022316	ENSSFOG00015022350
P. kingsleyae	MODERN SPECIES	252							ENSPKIG00000010408	ca14 (ENSPKIG00000010425) #30	mrps21 (ENSPKIG00000010445)	CIART (ENSPKIG00000010455)	prpf3 (ENSPKIG00000010501)	RPRD2 (ENSPKIG00000010576)	ENSPKIG00000010658	ENSPKIG00000010786	celf3a (ENSPKIG00000010833)	CERS2 (ENSPKIG00000010860) #22	arnt (ENSPKIG00000010903) #24	setdb1b (ENSPKIG00000010963)	ENSPKIG00000011018	clk2a (ENSPKIG00000011053)	ENSPKIG00000011075	cyp11c1 (ENSPKIG00000011095)	pklr (ENSPKIG00000011117)	ENSPKIG00000011152	zbtb7b (ENSPKIG00000011228)	khdc4 (ENSPKIG00000011269)	ENSPKIG00000011318	ENSPKIG00000011337	KCNJ14 (ENSPKIG00000011360)	ENSPKIG00000011407	si:ch211-120k19.1 (ENSPKIG00000011515)
Spotted gar	MODERN SPECIES	663	ENSLOCG00000006250	ENSLOCG00000006268	khdc4 (ENSLOCG00000006286)	ENTREP3 (ENSLOCG00000006299)	ENSLOCG00000006319	ENSLOCG00000006338	ITGA10 (ENSLOCG00000006355)	dap3 (ENSLOCG00000006373)	ENSLOCG00000006385	polr3c (ENSLOCG00000006400)	crabp2b (ENSLOCG00000006421)	ca14 (ENSLOCG00000006442) #30	ENSLOCG00000006450	ENSLOCG00000006471	celf3a (ENSLOCG00000006518)	cers2a (ENSLOCG00000006535) #22	ENSLOCG00000006560	ENSLOCG00000006575	ARNT (ENSLOCG00000006585) #24	clk2a (ENSLOCG00000006600)	pklr (ENSLOCG00000006611)	ENSLOCG00000006639	ENSLOCG00000006658	ENSLOCG00000017678	APH1A (ENSLOCG00000006674)	rab13 (ENSLOCG00000006687)	RPS27 (ENSLOCG00000006701)	NUP210L (ENSLOCG00000006713)	snapin (ENSLOCG00000006741)	smad10a (ENSLOCG00000006749)	snx27b (ENSLOCG00000006767)
Reedfish	MODERN SPECIES	10	syt11b (ENSECRG00000008583)	ENSECRG00000008525	ilf2 (ENSECRG00000008418)	chtopb (ENSECRG00000008373)	snapin (ENSECRG00000008354)	smad10a (ENSECRG00000008339)	ENSECRG00000008315	ENSECRG00000008281	ENSECRG00000007880 #30	ENSECRG00000007771	ENSECRG00000007761	ENSECRG00000007751	ENSECRG00000007723	ENSECRG00000007687	celf3a (ENSECRG00000007662)	cers2a (ENSECRG00000007629) #22	setdb1b (ENSECRG00000007597)	ENSECRG00000007573	ARNT (ENSECRG00000003366) #24	dap3 (ENSECRG00000002149)	ash1l (ENSECRG00000001983)	ENSECRG00000001946	fdps (ENSECRG00000001906)	ENSECRG00000001870	pklr (ENSECRG00000001821)	ENSECRG00000001124	ENSECRG00000000918	ENSECRG00000000886	ENSECRG00000000856	slc25a44b (ENSECRG00000000835)	crabp2b (ENSECRG00000000813)
Gnathostomata	ANCESTRAL SPECIES	19	ENSGT00940000159700	ENSGT00390000006753.B	ENSGT00940000161018	ENSGT00530000063851.b	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760 #32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00960000186669	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.b	ENSGT00390000000993	ENSGT00910000144335	ENSGT00390000018488	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Elephant shark	MODERN SPECIES	1490	foxb1a (ENSCMIG00000006126)	bnip2 (ENSCMIG00000006117)	gtf2a2 (ENSCMIG00000006103)	chrna7a (ENSCMIG00000006098)	spg21 (ENSCMIG00000006079)	ankdd1a (ENSCMIG00000006069)	ENSCMIG00000006066 #32	ENSCMIG00000005906	snrpa1 (ENSCMIG00000005821)	SELENOS (ENSCMIG00000005815)	chsy1 (ENSCMIG00000005813)	ENSCMIG00000005723	ALDH1A3 (ENSCMIG00000005633)	asb7 (ENSCMIG00000005610)	ENSCMIG00000005601	cers3b (ENSCMIG00000005593) ##22	ADAMTS17 (ENSCMIG00000005564)	MINAR1 (ENSCMIG00000005551)	MTHFS (ENSCMIG00000005544)	ZFAND6 (ENSCMIG00000005538)	fah (ENSCMIG00000005489)	CTXND1 (ENSCMIG00000005451)	arnt2 (ENSCMIG00000004464)	abhd17c (ENSCMIG00000004185)	ENSCMIG00000004089	mesd (ENSCMIG00000004049)	TLNRD1 (ENSCMIG00000004047)	CFAP161 (ENSCMIG00000004045)	ENSCMIG00000004034	STARD5 (ENSCMIG00000004029)	TMC3 (ENSCMIG00000004018)
Euteleostomi	ANCESTRAL SPECIES	6	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00960000186669	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00390000018488	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Actinopterygii	ANCESTRAL SPECIES	18	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00390000018488	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Neopterygii	ANCESTRAL SPECIES	11	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00390000018488	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Osteoglossocephalai	ANCESTRAL SPECIES	10	ENSGT00940000161629.a	ENSGT00390000008092.b.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00390000018488	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	55	ENSGT00940000161629.a	ENSGT00390000008092.b.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Otomorpha	ANCESTRAL SPECIES	167	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625.k	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Clupeiformes	ANCESTRAL SPECIES	38	ENSGT00940000158844	ENSGT00390000006043.o	ENSGT00950000182907.a.b.b.b ##31	ENSGT00940000158689	ENSGT00940000155465.i	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Atlantic herring	MODERN SPECIES	22	ENSCHAG00000019765	tradd (ENSCHAG00000019753)	gnao1b (ENSCHAG00000019660)	ENSCHAG00000019647	SLC38A8 (ENSCHAG00000019606)	trpm1a (ENSCHAG00000015154)	ANO1 (ENSCHAG00000014737)	ENSCHAG00000014707	ENSCHAG00000014641	ENSCHAG00000014490	rpl13 (ENSCHAG00000014439)	gcshb (ENSCHAG00000014434)	kars1 (ENSCHAG00000012424)	ENSCHAG00000012250	ENSCHAG00000012203	ENSCHAG00000012188 ##22	ADAMTS17 (ENSCHAG00000011700)	MINAR1 (ENSCHAG00000011675)	mthfs (ENSCHAG00000011657)	ZFAND6 (ENSCHAG00000011622)	fah (ENSCHAG00000011389)	ENSCHAG00000011369	arnt2 (ENSCHAG00000011050)	abhd17c (ENSCHAG00000011005)	CEMIP (ENSCHAG00000010147)	ENSCHAG00000010103	STARD5 (ENSCHAG00000010072)	TMC3 (ENSCHAG00000009828)	mex3b (ENSCHAG00000009813)	ENSCHAG00000009801	EFL1 (ENSCHAG00000009530)
Denticle herring	MODERN SPECIES	7	UACA (ENSDCDG00000023294)	tle3a (ENSDCDG00000023378)	paqr5b (ENSDCDG00000025967)	glceb (ENSDCDG00000025970)	CORO2B (ENSDCDG00000026021)	itga11a (ENSDCDG00000027395)	ENSDCDG00000027515 ##32	PCSK6 (ENSDCDG00000027564)	snrpa1 (ENSDCDG00000029782)	selenos (ENSDCDG00000029783)	chsy1 (ENSDCDG00000029786)	ENSDCDG00000029805	aldh1a3 (ENSDCDG00000030365)	asb7 (ENSDCDG00000030473)	LINS1 (ENSDCDG00000030475)	CERS3 (ENSDCDG00000030477) ##22	ADAMTS17 (ENSDCDG00000030481)	ADAMTS17 (ENSDCDG00000030484)	MINAR1 (ENSDCDG00000030493)	mthfs (ENSDCDG00000030496)	ZFAND6 (ENSDCDG00000030497)	fah (ENSDCDG00000030502)	ENSDCDG00000030713	arnt2 (ENSDCDG00000030800)	abhd17c (ENSDCDG00000032325)	CEMIP (ENSDCDG00000032404)	mesd (ENSDCDG00000033506)	TLNRD1 (ENSDCDG00000033507)	IL16 (ENSDCDG00000033509)	STARD5 (ENSDCDG00000033511)	TMC3 (ENSDCDG00000033519)
Otophysi	ANCESTRAL SPECIES	72	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625.k	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b.qb	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424.w.b	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Characiphysae	ANCESTRAL SPECIES	8	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00390000017392	ENSGT00390000017625.k	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b.pb.a	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424.w.a.b.a	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Characiphysae_b	ANCESTRAL SPECIES	4	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625.k	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b.pb.a	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424.w.a.b.a	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Characoidei	ANCESTRAL SPECIES	18	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625.k	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b.pb.b	ENSGT00940000153289.b.pb.a	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424.w.a.b.a	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Red-bellied piranha	MODERN SPECIES	62	rasl12 (ENSPNAG00000013197)	KBTBD13 (ENSPNAG00000002593)	UBAP1L (ENSPNAG00000013159)	pdcd7 (ENSPNAG00000013149)	clpxa (ENSPNAG00000013141)	spg21 (ENSPNAG00000013116)	ankdd1a (ENSPNAG00000013077)	ENSPNAG00000002532 ##32	PCSK6 (ENSPNAG00000013029)	selenos (ENSPNAG00000012986)	chsy1 (ENSPNAG00000002486)	LRRK1 (ENSPNAG00000012930)	aldh1a3 (ENSPNAG00000012732)	asb7 (ENSPNAG00000012684)	ENSPNAG00000012674	CERS3 (ENSPNAG00000012660) ##22	ADAMTS17 (ENSPNAG00000012650)	MINAR1 (ENSPNAG00000012608)	mthfs (ENSPNAG00000012592)	zfand6 (ENSPNAG00000002302)	fah (ENSPNAG00000012574)	ENSPNAG00000012501	arnt2 (ENSPNAG00000012468)	ENSPNAG00000012333	CEMIP (ENSPNAG00000012321)	mesd (ENSPNAG00000012271)	TLNRD1 (ENSPNAG00000012259)	IL16 (ENSPNAG00000006641)	STARD5 (ENSPNAG00000012223)	TMC3 (ENSPNAG00000012195)	mex3b (ENSPNAG00000002109)
Mexicana tetra	MODERN SPECIES	20	lmnl3 (ENSAMXG00000019658)	ENSAMXG00000019613	saxo2 (ENSAMXG00000019583)	EFL1 (ENSAMXG00000019529)	mex3b (ENSAMXG00000033615)	ENSAMXG00000037496	ENSAMXG00000034494	snrpa1 (ENSAMXG00000038943)	selenos (ENSAMXG00000041122)	chsy1 (ENSAMXG00000002763)	LRRK1 (ENSAMXG00000002705)	aldh1a3 (ENSAMXG00000034226)	ENSAMXG00000032525	asb7 (ENSAMXG00000033763)	ENSAMXG00000014202	CERS3 (ENSAMXG00000035173) ##22	ENSAMXG00000042642	ENSAMXG00000035835	ENSAMXG00000040728	ENSAMXG00000039012	ENSAMXG00000031644	pcdh17 (ENSAMXG00000008422)	ENSAMXG00000042682	diaph3 (ENSAMXG00000043429)	ENSAMXG00000031943	XXYLT1 (ENSAMXG00000008290)	ENSAMXG00000036210	fam43a (ENSAMXG00000025901)	ENSAMXG00000031419	lsg1 (ENSAMXG00000008271)	tmem44 (ENSAMXG00000032549)
Electric eel	MODERN SPECIES	79	rasl12 (ENSEEEG00000015405)	KBTBD13 (ENSEEEG00000015403)	pdcd7 (ENSEEEG00000015402)	clpxa (ENSEEEG00000015400)	spg21 (ENSEEEG00000015398)	ankdd1a (ENSEEEG00000015397)	ENSEEEG00000015396 ##32	PCSK6 (ENSEEEG00000015356)	snrpa1 (ENSEEEG00000015333)	selenos (ENSEEEG00000015331)	chsy1 (ENSEEEG00000015330)	LRRK1 (ENSEEEG00000015290)	aldh1a3 (ENSEEEG00000014314)	asb7 (ENSEEEG00000014286)	ENSEEEG00000014284	CERS3 (ENSEEEG00000014283) ##22	ADAMTS17 (ENSEEEG00000014279)	MINAR1 (ENSEEEG00000014277)	mthfs (ENSEEEG00000014276)	ZFAND6 (ENSEEEG00000014275)	fah (ENSEEEG00000014251)	ENSEEEG00000014245	arnt2 (ENSEEEG00000014094)	ABHD17C (ENSEEEG00000014086)	CEMIP (ENSEEEG00000014019)	mesd (ENSEEEG00000014014)	TLNRD1 (ENSEEEG00000014012)	ENSEEEG00000014008	STARD5 (ENSEEEG00000014005)	TMC3 (ENSEEEG00000014004)
Channel catfish	MODERN SPECIES	1	pdcd7 (ENSIPUG00000022951)	clpx (ENSIPUG00000022956)	spg21 (ENSIPUG00000023004)	ankdd1a (ENSIPUG00000023010)	ENSIPUG00000023020	plekho2 (ENSIPUG00000023021) ##32	pcsk6 (ENSIPUG00000023025)	snrpa1 (ENSIPUG00000023040)	vimp (ENSIPUG00000023049)	Chsy1 (ENSIPUG00000023058)	lrrk1 (ENSIPUG00000023065)	ENSIPUG00000023120	aldh1a3 (ENSIPUG00000023124)	asb7 (ENSIPUG00000023137)	LINS (ENSIPUG00000023142)	cers3 (ENSIPUG00000023150) ##22	adamts17 (ENSIPUG00000023156)	kiaa1024 (ENSIPUG00000023173)	mthfs (ENSIPUG00000023175)	zfand6 (ENSIPUG00000023188)	fah (ENSIPUG00000023191)	ENSIPUG00000023205	arnt2 (ENSIPUG00000023210)	abhd17c (ENSIPUG00000023223)	KIAA1199 (ENSIPUG00000023233)	mesdc2 (ENSIPUG00000023319)	Mesdc1 (ENSIPUG00000023324)	il16 (ENSIPUG00000023329)	stard5 (ENSIPUG00000023336)	TMC3 (ENSIPUG00000023343)	mex3b (ENSIPUG00000023356)
Cyprinoidei	ANCESTRAL SPECIES	14	ENSGT00390000005650	ENSGT00390000010888	ENSGT00510000048167.b.a	ENSGT00940000161043	ENSGT00390000008711.g	ENSGT00530000063106.A.s.a.a	ENSGT00940000160694.g.b	ENSGT00940000159506	ENSGT00940000153289.b.qb	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424.w.b	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	161															ENSGT00940000158068.q	ENSGT01030000234515.a.b.a.b.a.a ##22	ENSGT00940000158773.c	ENSGT00530000063851.a.a.d	ENSGT00390000017791.b	ENSGT00940000164966.a.b	ENSGT00390000008646.e	ENSGT00940000158198.s.b	ENSGT00940000159424.w.b.a	ENSGT00940000153636.a.c	ENSGT00390000000993.n	ENSGT00910000144335.g	ENSGT00940000156178.A.z.b	ENSGT00940000159159.b	ENSGT01050000244942.a.c	ENSGT00940000160013.e	ENSGT00550000074806.v.b
Goldfish	MODERN SPECIES	25	mespaa (ENSCARG00000015187)	ENSCARG00000015208	igf1rb (ENSCARG00000015482)	LRRC28 (ENSCARG00000005854)	ENSCARG00000005874	ENSCARG00000005902	RCN1 (ENSCARG00000006002)	pax6b (ENSCARG00000006174)	elp4 (ENSCARG00000008441)	immp1l (ENSCARG00000008452)	ENSCARG00000008468	CEMIP (ENSCARG00000008591)	mesd (ENSCARG00000011791)	TLNRD1 (ENSCARG00000011803)	asb7 (ENSCARG00000011809)	ENSCARG00000011819 ##22	ADAMTS17 (ENSCARG00000011853)	MINAR1 (ENSCARG00000011964)	fah (ENSCARG00000011976)	mthfs (ENSCARG00000012009)	arnt2 (ENSCARG00000012046)	abhd17c (ENSCARG00000013120)	CEMIP (ENSCARG00000013223)	mesd (ENSCARG00000015467)	IL16 (ENSCARG00000015479)	ENSCARG00000015497	TMC3 (ENSCARG00000015501)	mpped2a (ENSCARG00000015552)	ENSCARG00000015559	immp1l (ENSCARG00000015570)	elp4 (ENSCARG00000015584)
Cyprininae_a	ANCESTRAL SPECIES	299								ENSGT00940000159506.d	ENSGT00940000153289.b.qb.b	ENSGT00940000166109.a	ENSGT01050000244857.C.a.a.a	ENSGT00940000160363.c.a	ENSGT00940000158815.o	ENSGT00940000158068.q	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.a ##22	ENSGT00940000158773.c	ENSGT00530000063851.a.a.d	ENSGT00390000017791.b	ENSGT00940000164966.a.b	ENSGT00390000008646.e	ENSGT00990000203849	ENSGT00940000158198.t	ENSGT00940000159424.w.a.b.a	ENSGT00940000158198.s.b	ENSGT00940000159424.w.b.a	ENSGT00940000153636.a.c	ENSGT00390000000993.n	ENSGT00910000144335.g	ENSGT00940000156178.A.z.b	ENSGT00940000159159.b
Common carp reference	MODERN SPECIES	6	ENSCCRG00000034509	ENSCCRG00000076542	ENSCCRG00000068258	vax2 (ENSCCRG00000055335)	ENSCCRG00000064231	ENSCCRG00000059963	ENSCCRG00000014876	ENSCCRG00000063493	PCSK6 (ENSCCRG00000036770)	snrpa1 (ENSCCRG00000060605)	selenos (ENSCCRG00000023140)	chsy1 (ENSCCRG00000078413)	LRRK1 (ENSCCRG00000076693)	aldh1a3 (ENSCCRG00000043579)	asb7 (ENSCCRG00000082706)	CERS3 (ENSCCRG00000068922) ##22	ADAMTS17 (ENSCCRG00000077539)	MINAR1 (ENSCCRG00000017172)	mthfs (ENSCCRG00000003370)	zfand6 (ENSCCRG00000004347)	fah (ENSCCRG00000057792)	arnt2 (ENSCCRG00000045483)	abhd17c (ENSCCRG00000057411)	CEMIP (ENSCCRG00000064030)	mesd (ENSCCRG00000017345)	IL16 (ENSCCRG00000005164)	STARD5 (ENSCCRG00000065478)	TMC3 (ENSCCRG00000005177)	mex3b (ENSCCRG00000013078)	EFL1 (ENSCCRG00000038416)	saxo2 (ENSCCRG00000017493)
Golden-line barbel	MODERN SPECIES	480	ENSSGRG00000016038	ENSSGRG00000016042	ENSSGRG00000016044	tex261 (ENSSGRG00000016046)	ENSSGRG00000016048	vax2 (ENSSGRG00000016049)	ADISSP (ENSSGRG00000016050)	helz2c (ENSSGRG00000016052)	PCSK6 (ENSSGRG00000016057)	snrpa1 (ENSSGRG00000016199)	chsy1 (ENSSGRG00000016202)	LRRK1 (ENSSGRG00000016206)	aldh1a3 (ENSSGRG00000016238)	ttll11 (ENSSGRG00000016810)	ENSSGRG00000016812	ENSSGRG00000016816 ##22	ADAMTS17 (ENSSGRG00000016872)	MINAR1 (ENSSGRG00000016944)	MINAR1 (ENSSGRG00000016945)
Cyprininae	ANCESTRAL SPECIES	199	ENSGT00940000153763.a.j.a	ENSGT00950000183148.b.a.g.a.d.a	ENSGT00940000157258.b	ENSGT00940000164485.a.a.g	ENSGT00940000164485.a.b.a.a	ENSGT00940000165455.d	ENSGT00940000154589.b.z	ENSGT00940000159506.c	ENSGT00940000153289.b.qb.a	ENSGT00940000166109.b	ENSGT01050000244857.C.a.a.b	ENSGT00940000160363.c.b	ENSGT00940000158815.p	ENSGT00940000158068.r	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.b ##22	ENSGT00940000158773.d.a	ENSGT00940000158773.d.b	ENSGT00530000063851.a.a.c	ENSGT00390000017791.a	ENSGT00940000164966.a.a	ENSGT00390000008646.f	ENSGT00940000158198.s.a	ENSGT00940000159424.w.b.b	ENSGT00940000153636.a.d	ENSGT00390000000993.m	ENSGT00910000144335.h	ENSGT00940000156178.A.z.a	ENSGT00940000159159.a	ENSGT01050000244942.a.d	ENSGT00940000160013.f
Goldfish	MODERN SPECIES	47	CLCN5 (ENSCARG00000007414)	pygmb (ENSCARG00000009719)	sf1 (ENSCARG00000011268)	rbm4.1 (ENSCARG00000011430)	rbm4.2 (ENSCARG00000011438)	rbm4.3 (ENSCARG00000011443)	ENSCARG00000011448	PCSK6 (ENSCARG00000011493)	snrpa1 (ENSCARG00000011890)	selenos (ENSCARG00000012086)	chsy1 (ENSCARG00000012096)	LRRK1 (ENSCARG00000012163)	aldh1a3 (ENSCARG00000012522)	asb7 (ENSCARG00000014031)	ENSCARG00000014043	CERS3 (ENSCARG00000014049) ##22	ENSCARG00000014061	ENSCARG00000014091	PLEKHA7 (ENSCARG00000014224)	rps13 (ENSCARG00000014307)	ENSCARG00000014319	caprin1a (ENSCARG00000014628)	ENSCARG00000014753	ext2 (ENSCARG00000014762)	tspan18a (ENSCARG00000014799)	cd82a (ENSCARG00000014812)	tp53i11a (ENSCARG00000014831)	hsbp1a (ENSCARG00000014839)	phf23b (ENSCARG00000014858)	plscr3b (ENSCARG00000014882)	ENSCARG00000014900
Cyprininae_a	ANCESTRAL SPECIES	2	ENSGT01070000253816.a.a.a.c.a.b.a.a	ENSGT00940000153763.a.j.a	ENSGT00950000183148.b.a.g.a.d.a	ENSGT00940000157258.b	ENSGT00940000164485.a.a.g	ENSGT00940000164485.a.b.a.a	ENSGT00940000165455.d	ENSGT00940000154589.b.z	ENSGT00940000159506.c	ENSGT00940000153289.b.qb.a	ENSGT00940000166109.b	ENSGT01050000244857.C.a.a.b	ENSGT00940000165193	ENSGT00940000158815.p	ENSGT00940000158068.r	ENSGT01030000234515.a.b.a.b.a.b ##22	ENSGT00940000158773.d.a	ENSGT00530000063851.a.a.c	ENSGT00390000017791.a	ENSGT00940000164966.a.a	ENSGT00390000008646.f	ENSGT00940000158198.s.a	ENSGT00940000159424.w.b.b	ENSGT00940000153636.a.d	ENSGT00390000000993.m	ENSGT00910000144335.h	ENSGT00940000156178.A.z.a	ENSGT00940000159159.a	ENSGT01050000244942.a.d	ENSGT00940000160013.f	ENSGT00550000074806.v.a
Golden-line barbel	MODERN SPECIES	23	tnfsf10l (ENSSGRG00000047707)	CLCN5 (ENSSGRG00000047716)	pygmb (ENSSGRG00000049140)	sf1 (ENSSGRG00000049382)	rbm4.1 (ENSSGRG00000049421)	rbm4.2 (ENSSGRG00000049423)	rbm4.3 (ENSSGRG00000049425)	ENSSGRG00000049426	PCSK6 (ENSSGRG00000049431)	ENSSGRG00000049438	selenos (ENSSGRG00000049439)	chsy1 (ENSSGRG00000049440)	ENSSGRG00000049442	aldh1a3 (ENSSGRG00000049463)	asb7 (ENSSGRG00000050114)	CERS3 (ENSSGRG00000050116) ##22	ADAMTS17 (ENSSGRG00000050123)	zfand6 (ENSSGRG00000050130)	fah (ENSSGRG00000050133)	ENSSGRG00000050147	arnt2 (ENSSGRG00000050154)	abhd17c (ENSSGRG00000050280)	ENSSGRG00000050281	ENSSGRG00000050283	ENSSGRG00000050286	ENSSGRG00000050290
Common carp reference	MODERN SPECIES		htr2cl1 (ENSCCRG00000019458)	ccnb3 (ENSCCRG00000019455)	tnfsf10l (ENSCCRG00000019443)	ENSCCRG00000009877	pygmb (ENSCCRG00000024457)	sf1 (ENSCCRG00000053685)	rbm4.1 (ENSCCRG00000031666)	ENSCCRG00000064592	PCSK6 (ENSCCRG00000055354)	snrpa1 (ENSCCRG00000039960)	selenos (ENSCCRG00000078567)	chsy1 (ENSCCRG00000067232)	ENSCCRG00000062699	aldh1a3 (ENSCCRG00000062586)	asb7 (ENSCCRG00000037568)	ENSCCRG00000037567 ##22	ADAMTS17 (ENSCCRG00000081308)	MINAR1 (ENSCCRG00000006101)	mthfs (ENSCCRG00000030952)	zfand6 (ENSCCRG00000059176)	fah (ENSCCRG00000031887)	arnt2 (ENSCCRG00000013121)	abhd17c (ENSCCRG00000035621)	CEMIP (ENSCCRG00000064761)	mesd (ENSCCRG00000030102)	TLNRD1 (ENSCCRG00000078908)	IL16 (ENSCCRG00000030111)	STARD5 (ENSCCRG00000075923)	TMC3 (ENSCCRG00000030137)	mex3b (ENSCCRG00000069459)	EFL1 (ENSCCRG00000073904)
Zebrafish	MODERN SPECIES	22	ENSDARG00000098445	tex261 (ENSDARG00000044584)	ENSDARG00000017504	vax2 (ENSDARG00000058702)	ADISSP (ENSDARG00000076239)	ENSDARG00000100900	helz2c (ENSDARG00000012446)	PCSK6 (ENSDARG00000104574)	snrpa1 (ENSDARG00000024651)	selenos (ENSDARG00000070097)	chsy1 (ENSDARG00000079027)	LRRK1 (ENSDARG00000007398)	aldh1a3 (ENSDARG00000076933)	asb7 (ENSDARG00000006494)	ENSDARG00000086879	CERS3 (ENSDARG00000078541) ##22	ADAMTS17 (ENSDARG00000075555)	MINAR1 (ENSDARG00000105432)	mthfs (ENSDARG00000104487)	zfand6 (ENSDARG00000098443)	fah (ENSDARG00000101762)	arnt2 (ENSDARG00000103697)	ENSDARG00000114931	abhd17c (ENSDARG00000058452)	CEMIP (ENSDARG00000039881)	mesd (ENSDARG00000063030)	TLNRD1 (ENSDARG00000079017)	IL16 (ENSDARG00000102908)	STARD5 (ENSDARG00000076117)	ENSDARG00000090696	ENSDARG00000115178
Euteleosteomorpha	ANCESTRAL SPECIES	51	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Acanthomorphata	ANCESTRAL SPECIES	118	ENSGT00940000160167	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Euacanthomorphacea	ANCESTRAL SPECIES	48	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000154856.A.a.c.a.b.a.b.d	ENSGT00940000154856.A.a.c.a.a	ENSGT00390000000020.b	ENSGT00390000006876	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00940000160833	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Percomorphaceae	ANCESTRAL SPECIES	50	ENSGT00940000160167	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00940000179556	ENSGT00390000008092.b.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00940000166163	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Percomorphaceae_B	ANCESTRAL SPECIES	12				ENSGT00390000009505	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Percomorphaceae_C	ANCESTRAL SPECIES	11	ENSGT00390000009505	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Eupercaria	ANCESTRAL SPECIES	18	ENSGT00940000156076.a.a.a.b.a.a	ENSGT00940000163235.E.l	ENSGT00960000186729	ENSGT00940000156076.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143
Eupecaria_A	ANCESTRAL SPECIES	18	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000158143
Ballan wrasse	MODERN SPECIES	41	ENSLBEG00000021051	ENSLBEG00000021041	ENSLBEG00000021023	phospho2 (ENSLBEG00000021014)	SYAP1 (ENSLBEG00000020971)	adgrg1 (ENSLBEG00000020943)	slc7a6 (ENSLBEG00000020916)	slc7a6os (ENSLBEG00000020896)	snrpa1 (ENSLBEG00000020879)	selenos (ENSLBEG00000020861)	chsy1 (ENSLBEG00000020843)	LRRK1 (ENSLBEG00000020772)	aldh1a3 (ENSLBEG00000020705)	asb7 (ENSLBEG00000020690)	ENSLBEG00000020658	CERS3 (ENSLBEG00000020633) ##22	ADAMTS17 (ENSLBEG00000020564)	MINAR1 (ENSLBEG00000020533)	mthfs (ENSLBEG00000020515)	cd81a (ENSLBEG00000020484)	fgf19 (ENSLBEG00000020439)	fgf4 (ENSLBEG00000020420)	fgf3 (ENSLBEG00000020405)	lto1 (ENSLBEG00000020392)	ccnd1 (ENSLBEG00000020370)
Eupecaria_B	ANCESTRAL SPECIES	18	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000166403
Eupecaria_C	ANCESTRAL SPECIES	21	ENSGT00940000159061	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424.r	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952
Gilthead seabream	MODERN SPECIES	18	ENSSAUG00010000476	ENSSAUG00010000480	ENSSAUG00010000481	phospho2 (ENSSAUG00010000488)	SYAP1 (ENSSAUG00010000493)	adgrg1 (ENSSAUG00010000500)	slc7a6 (ENSSAUG00010000529)	slc7a6os (ENSSAUG00010000620)	ENSSAUG00010000623	ANO9 (ENSSAUG00010000625)	ENSSAUG00010000640	PIP5KL1 (ENSSAUG00010000644)	PIP5KL1 (ENSSAUG00010000646)	ENSSAUG00010000649	ENSSAUG00010000650	ENSSAUG00010000656 ##22	ADAMTS17 (ENSSAUG00010000687)	MINAR1 (ENSSAUG00010000734)	mthfs (ENSSAUG00010000738)	fah (ENSSAUG00010000744)	ENSSAUG00010000752	ENSSAUG00010000754	arnt2 (ENSSAUG00010000770)	ABHD17C (ENSSAUG00010000847)	CEMIP (ENSSAUG00010000901)	mesd (ENSSAUG00010002143)	TLNRD1 (ENSSAUG00010002145)	IL16 (ENSSAUG00010002155)	STARD5 (ENSSAUG00010002164)	TMC3 (ENSSAUG00010002180)	ENSSAUG00010002230
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	18	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT01100000263513.a.a.b.b.a.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424.r	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00550000074806	ENSGT00940000158143	ENSGT00940000164952
European seabass	MODERN SPECIES	18	ENSDLAG00005017888	ENSDLAG00005019258	ENSDLAG00005031087	tollip (ENSDLAG00005029302)	ENSDLAG00005019325	ENSDLAG00005026920	ENSDLAG00005028413	ENSDLAG00005013000	snrpa1 (ENSDLAG00005012904)	ENSDLAG00005012885	chsy1 (ENSDLAG00005012848)	LRRK1 (ENSDLAG00005011682)	aldh1a3 (ENSDLAG00005008137)	asb7 (ENSDLAG00005008004)	ENSDLAG00005007990	CERS3 (ENSDLAG00005007976) ##22	ADAMTS17 (ENSDLAG00005007818)	MINAR1 (ENSDLAG00005016561)	mthfs (ENSDLAG00005031593)	fah (ENSDLAG00005007592)	arnt2 (ENSDLAG00005004634)	abhd17c (ENSDLAG00005030156)	ENSDLAG00005004461	CEMIP (ENSDLAG00005002105)	ENSDLAG00005029155	ENSDLAG00005031661	mesd (ENSDLAG00005002035)	TLNRD1 (ENSDLAG00005031576)	IL16 (ENSDLAG00005002023)	STARD5 (ENSDLAG00005026935)	TMC3 (ENSDLAG00005001995)
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005004914	MARCH5A (ENSLCRG00005004925)	ENSLCRG00005004935	ENSLCRG00005005148	FGFR1 (ENSLCRG00005005221)	stc1l (ENSLCRG00005014769)	ENSLCRG00005014770	ENSLCRG00005014776	selenos (ENSLCRG00005014777)	chsy1 (ENSLCRG00005014778)	LRRK1 (ENSLCRG00005014797)	ENSLCRG00005015170	aldh1a3 (ENSLCRG00005015213)	asb7 (ENSLCRG00005017687)	ENSLCRG00005017701	CERS3 (ENSLCRG00005017708) ##22	ADAMTS17 (ENSLCRG00005017714)	ENSLCRG00005018022	MINAR1 (ENSLCRG00005018023)	mthfs (ENSLCRG00005018025)	fah (ENSLCRG00005018030)	arnt2 (ENSLCRG00005018075)	abhd17c (ENSLCRG00005018887)	CEMIP (ENSLCRG00005018909)	mesd (ENSLCRG00005018993)	TLNRD1 (ENSLCRG00005018994)	IL16 (ENSLCRG00005018995)	STARD5 (ENSLCRG00005019013)	TMC3 (ENSLCRG00005019020)	ENSLCRG00005019028	ctsd (ENSLCRG00005019034)
Perciformes	ANCESTRAL SPECIES	35			ENSGT00940000166403	ENSGT00550000074806	ENSGT00940000160013	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a	ENSGT00940000159424	ENSGT00940000158198	ENSGT00390000008646	ENSGT00390000017791	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000001790	ENSGT00940000158068	ENSGT00940000158815	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000163235.A.a.b.b	ENSGT01040000240607	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000177138
Cottioidei	ANCESTRAL SPECIES	99									ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773
Lumpfish	MODERN SPECIES	18	ENSCLMG00005000838	ENSCLMG00005000836	ENSCLMG00005000826	ENSCLMG00005000815	tollip (ENSCLMG00005000812)	celf1 (ENSCLMG00005000722)	mesd (ENSCLMG00005000718)	TLNRD1 (ENSCLMG00005000717)	ENSCLMG00005000716	ENSCLMG00005000713	STARD5 (ENSCLMG00005000711)	TMC3 (ENSCLMG00005000704)	mex3b (ENSCLMG00005000700)	EFL1 (ENSCLMG00005000670)	ENSCLMG00005000669	ENSCLMG00005000668 ##22	ADAMTS17 (ENSCLMG00005000636)	ENSCLMG00005000626	mtfmt (ENSCLMG00005000621)	gpt2 (ENSCLMG00005000199)	zgc:92818 (ENSCLMG00005000060)	vps35 (ENSCLMG00005000043)	fgf19 (ENSCLMG00005000033)	fgf4 (ENSCLMG00005000022)	fgf3 (ENSCLMG00005016329)	ENSCLMG00005016328	ccnd1 (ENSCLMG00005016327)	ENSCLMG00005016326	vstm2b (ENSCLMG00005016325)	uqcrfs1 (ENSCLMG00005016323)	rasl12 (ENSCLMG00005016322)
Perciformes_a	ANCESTRAL SPECIES	42				ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806	ENSGT00940000166403	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000001790	ENSGT00940000158068	ENSGT00940000158815	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00940000166109	ENSGT00940000153289.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000163235.A.a.b.b	ENSGT01040000240607	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000177138
Pike perch	MODERN SPECIES	93															fah (ENSSLUG00000005397)	ENSSLUG00000005284 ##22	ADAMTS17 (ENSSLUG00000004957)	ENSSLUG00000004932	asb7 (ENSSLUG00000004926)	aldh1a3 (ENSSLUG00000003363)	LRRK1 (ENSSLUG00000002527)	chsy1 (ENSSLUG00000002431)	selenos (ENSSLUG00000002426)	snrpa1 (ENSSLUG00000002415)	ENSSLUG00000002390	ENSSLUG00000002378	ENSSLUG00000002375	ENSSLUG00000002354	ENSSLUG00000002344	ENSSLUG00000002341	ENSSLUG00000002327
Channel bull blenny	MODERN SPECIES	17	fah (ENSCGOG00000013369)	arnt2 (ENSCGOG00000013621)	ENSCGOG00000015922	abhd17c (ENSCGOG00000015924)	CEMIP (ENSCGOG00000015931)	mesd (ENSCGOG00000016181)	TLNRD1 (ENSCGOG00000016183)	ENSCGOG00000016186	ENSCGOG00000016193	STARD5 (ENSCGOG00000016199)	TMC3 (ENSCGOG00000016203)	mex3b (ENSCGOG00000016205)	ENSCGOG00000016208	ENSCGOG00000016211	ENSCGOG00000016214	CERS3 (ENSCGOG00000016216) ##22	ADAMTS17 (ENSCGOG00000016227)	MINAR1 (ENSCGOG00000016232)	ENSCGOG00000016233	tollip (ENSCGOG00000016239)	celf1 (ENSCGOG00000016375)	mtfmt (ENSCGOG00000017216)	gpt2 (ENSCGOG00000017246)	zgc:92818 (ENSCGOG00000018140)	vps35 (ENSCGOG00000018150)	fgf19 (ENSCGOG00000018336)	fgf4 (ENSCGOG00000018342)	fgf3 (ENSCGOG00000018344)	lto1 (ENSCGOG00000018345)	ccnd1 (ENSCGOG00000018348)	vstm2b (ENSCGOG00000018355)
Percomorphaceae_D	ANCESTRAL SPECIES	11	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Carangaria	ANCESTRAL SPECIES	11	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.b.a.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00550000074806
Carangaria_A	ANCESTRAL SPECIES	20	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.A.a.b.a.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Seriola	ANCESTRAL SPECIES	13	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000178983	ENSGT00940000163235.A.a.b.a.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Greater amberjack	MODERN SPECIES	1	ENSSDUG00000011702	ENSSDUG00000011714	ENSSDUG00000011742	snrpa1 (ENSSDUG00000011803)	ENSSDUG00000011829	ENSSDUG00000011838	ENSSDUG00000011850	ENSSDUG00000011861	ENSSDUG00000011867	selenos (ENSSDUG00000011876)	chsy1 (ENSSDUG00000011882)	LRRK1 (ENSSDUG00000011917)	aldh1a3 (ENSSDUG00000012087)	asb7 (ENSSDUG00000012146)	ENSSDUG00000012156	CERS3 (ENSSDUG00000012168) ##22	ADAMTS17 (ENSSDUG00000012190)	MINAR1 (ENSSDUG00000012250)	mthfs (ENSSDUG00000012268)	fah (ENSSDUG00000012276)	ENSSDUG00000012301	arnt2 (ENSSDUG00000012321)	abhd17c (ENSSDUG00000012357)	CEMIP (ENSSDUG00000012379)	mesd (ENSSDUG00000012432)	TLNRD1 (ENSSDUG00000012440)	IL16 (ENSSDUG00000012459)	STARD5 (ENSSDUG00000012509)	TMC3 (ENSSDUG00000012524)	ENSSDUG00000012574	ENSSDUG00000012580
Yellowtail amberjack	MODERN SPECIES	3219																ENSSLDG00000010551 ##22	ADAMTS17 (ENSSLDG00000010597)	MINAR1 (ENSSLDG00000010756)	mthfs (ENSSLDG00000010775)	fah (ENSSLDG00000010828)	ENSSLDG00000010916	arnt2 (ENSSLDG00000010949)	abhd17c (ENSSLDG00000011061)	CEMIP (ENSSLDG00000011091)	mesd (ENSSLDG00000011145)	TLNRD1 (ENSSLDG00000011158)	ENSSLDG00000011191	ENSSLDG00000011268	STARD5 (ENSSLDG00000011303)	TMC3 (ENSSLDG00000011343)
Barramundi perch	MODERN SPECIES	100	ENSLCAG00010008510	ENSLCAG00010008511	tollip (ENSLCAG00010008519)	ENSLCAG00010008542	ENSLCAG00010008544	ENSLCAG00010008548	ENSLCAG00010008550	ENSLCAG00010008566	snrpa1 (ENSLCAG00010008581)	selenos (ENSLCAG00010008587)	chsy1 (ENSLCAG00010008589)	ENSLCAG00010008613	aldh1a3 (ENSLCAG00010008725)	asb7 (ENSLCAG00010008748)	ENSLCAG00010008751	CERS3 (ENSLCAG00010008758) ##22	ADAMTS17 (ENSLCAG00010008786)	MINAR1 (ENSLCAG00010008846)	mthfs (ENSLCAG00010008849)	zfand6 (ENSLCAG00010008851)	fah (ENSLCAG00010008898)	arnt2 (ENSLCAG00010009086)	ENSLCAG00010009385	abhd17c (ENSLCAG00010009392)	CEMIP (ENSLCAG00010009422)	mesd (ENSLCAG00010009546)	TLNRD1 (ENSLCAG00010009550)	IL16 (ENSLCAG00010009559)	STARD5 (ENSLCAG00010009570)	TMC3 (ENSLCAG00010009593)	AP2A2 (ENSLCAG00010009648)
Pleuronectoidei	ANCESTRAL SPECIES	10	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a
Tongue sole	MODERN SPECIES	15	FHOD1 (ENSCSEG00000006395)	cebpg (ENSCSEG00000006448)	cebpa (ENSCSEG00000006454)	adprhl1 (ENSCSEG00000006457)	TMCO3 (ENSCSEG00000006464)	ENSCSEG00000006491	gas6 (ENSCSEG00000006497)	pros1 (ENSCSEG00000006504)	ENSCSEG00000006510	ENSCSEG00000006521	RASA3 (ENSCSEG00000006529)	TPP2 (ENSCSEG00000006557)	ENSCSEG00000006593	ENSCSEG00000006596	ENSCSEG00000006636	ENSCSEG00000006658 ##22	ADAMTS17 (ENSCSEG00000006669)	MINAR1 (ENSCSEG00000006728)	fah (ENSCSEG00000006731)	mthfs (ENSCSEG00000006755)	ENSCSEG00000006763	arnt2 (ENSCSEG00000006767)	abhd17c (ENSCSEG00000006810)	CEMIP (ENSCSEG00000006836)	ENSCSEG00000007014	fgf3 (ENSCSEG00000007028)	fgf4 (ENSCSEG00000007038)	fgf19 (ENSCSEG00000007061)	ENSCSEG00000007084 ##32	ankdd1a (ENSCSEG00000007096)	znf414 (ENSCSEG00000007111)
Turbot	MODERN SPECIES	17	ENSSMAG00000013750	ENSSMAG00000013817	ENSSMAG00000013827	TOLLIP (ENSSMAG00000024223)	ENSSMAG00000013963	ENSSMAG00000014040	ENSSMAG00000027828	ENSSMAG00000033328	ENSSMAG00000014193	snrpa1 (ENSSMAG00000014554)	selenos (ENSSMAG00000014590)	chsy1 (ENSSMAG00000014670)	LRRK1 (ENSSMAG00000014685)	aldh1a3 (ENSSMAG00000014835)	asb7 (ENSSMAG00000014908)	ENSSMAG00000014918 ##22	ADAMTS17 (ENSSMAG00000014979)	ENSSMAG00000028354	ENSSMAG00000015102	mthfs (ENSSMAG00000015994)	zfand6 (ENSSMAG00000029979)	fgf3 (ENSSMAG00000016036)	ENSSMAG00000016046	fgf19 (ENSSMAG00000037043)	ENSSMAG00000016094 ##32	ENSSMAG00000016115	ENSSMAG00000016213	mtch2 (ENSSMAG00000016182)	ENSSMAG00000034886	ENSSMAG00000016256	ENSSMAG00000016289
Anabantaria	ANCESTRAL SPECIES	11	ENSGT00940000177138	ENSGT00940000156076.a.b	ENSGT00940000156076.a.a.a.b.a.a	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013
Zig-zag eel	MODERN SPECIES	17	ENSMAMG00000009963	ENSMAMG00000009988	ENSMAMG00000010024	ENSMAMG00000010052	ENSMAMG00000010476	ENSMAMG00000010496	ENSMAMG00000010511	ENSMAMG00000010536	ENSMAMG00000010582	selenos (ENSMAMG00000010604)	chsy1 (ENSMAMG00000010612)	LRRK1 (ENSMAMG00000010626)	aldh1a3 (ENSMAMG00000010742)	asb7 (ENSMAMG00000024692)	ENSMAMG00000010800	CERS3 (ENSMAMG00000010814) ##22	ADAMTS17 (ENSMAMG00000010830)	MINAR1 (ENSMAMG00000010919)	mthfs (ENSMAMG00000010932)	zfand6 (ENSMAMG00000010946)	fah (ENSMAMG00000010955)	ENSMAMG00000010999	arnt2 (ENSMAMG00000011017)	abhd17c (ENSMAMG00000011095)	CEMIP (ENSMAMG00000011116)	mesd (ENSMAMG00000011219)	TLNRD1 (ENSMAMG00000011228)	ENSMAMG00000011242	ENSMAMG00000011274	STARD5 (ENSMAMG00000011283)	TMC3 (ENSMAMG00000011291)
Anabantoidei	ANCESTRAL SPECIES	8	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT01040000240607	ENSGT00940000163235.A.a.b.b	ENSGT00940000156076.a.a.a.a	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000164966.a	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806
Climbing perch	MODERN SPECIES	16	ENSATEG00000010858	ENSATEG00000010871	tollip (ENSATEG00000027179)	ENSATEG00000010952	ENSATEG00000028956	ENSATEG00000030174	ENSATEG00000011170	ENSATEG00000011227	snrpa1 (ENSATEG00000011541)	selenos (ENSATEG00000025885)	chsy1 (ENSATEG00000011583)	LRRK1 (ENSATEG00000011604)	aldh1a3 (ENSATEG00000011730)	asb7 (ENSATEG00000011774)	ENSATEG00000011782	CERS3 (ENSATEG00000025757) ##22	ADAMTS17 (ENSATEG00000011826)	MINAR1 (ENSATEG00000011874)	mthfs (ENSATEG00000011902)	ZFAND6 (ENSATEG00000027617)	fah (ENSATEG00000011928)	arnt2 (ENSATEG00000012006)	abhd17c (ENSATEG00000012032)	CEMIP (ENSATEG00000012050)	mesd (ENSATEG00000012109)	TLNRD1 (ENSATEG00000012126)	IL16 (ENSATEG00000012139)	STARD5 (ENSATEG00000026854)	TMC3 (ENSATEG00000012254)	ENSATEG00000029455	mex3b (ENSATEG00000012352)
Ovalentaria	ANCESTRAL SPECIES	32				ENSGT00390000009505	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Atherinomorphae	ANCESTRAL SPECIES	55	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Oryzias	ANCESTRAL SPECIES	68	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000163235.E.k.a	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068.d	ENSGT00940000158068.c	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a.e	ENSGT00940000158198	ENSGT00990000203849	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a
Oryzias_b	ANCESTRAL SPECIES	5	ENSGT00940000154615.i.a.a.c.b.a.a	ENSGT00390000009505	ENSGT00390000007315	ENSGT00390000017828	ENSGT00940000158970	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000162219	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068.d	ENSGT00940000158068.c	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT01050000244942.a	ENSGT00940000159159	ENSGT00940000156178.A	ENSGT00910000144335	ENSGT00390000000993	ENSGT00940000153636.a.f	ENSGT00940000153636.a.e	ENSGT00940000158198	ENSGT00990000203849	ENSGT00390000008646	ENSGT00390000017791	ENSGT00530000063851.a.a
Javanese ricefish	MODERN SPECIES	17	ENSOJAG00000017299	zgc:92818 (ENSOJAG00000003756)	vps35 (ENSOJAG00000003795)	mtfmt (ENSOJAG00000004251)	celf1 (ENSOJAG00000004303)	tollip (ENSOJAG00000004368)	ENSOJAG00000004604	ENSOJAG00000004612	MINAR1 (ENSOJAG00000004637)	ENSOJAG00000004643	selenos (ENSOJAG00000004659)	chsy1 (ENSOJAG00000004680)	ENSOJAG00000004757	asb7 (ENSOJAG00000004988)	ENSOJAG00000005005	CERS3 (ENSOJAG00000005074) ##22	TMC3 (ENSOJAG00000005465)	STARD5 (ENSOJAG00000005537)	ENSOJAG00000005677	ENSOJAG00000005727	TLNRD1 (ENSOJAG00000005741)	mesd (ENSOJAG00000005789)	ENSOJAG00000005797	arnt2 (ENSOJAG00000005870)	ENSOJAG00000005912	fah (ENSOJAG00000005954)	ENSOJAG00000006338	ENSOJAG00000006353
Indian medaka	MODERN SPECIES	230							snrpa1 (ENSOMEG00000008362)	chsy1 (ENSOMEG00000008376)	ENSOMEG00000008431	ENSOMEG00000008480	aldh1a3 (ENSOMEG00000008510)	asb7 (ENSOMEG00000008532)	asb7 (ENSOMEG00000008544)	ENSOMEG00000008560	ENSOMEG00000008571	CERS3 (ENSOMEG00000000217) ##22	ADAMTS17 (ENSOMEG00000008637)	ENSOMEG00000008658	STARD5 (ENSOMEG00000008673)	ENSOMEG00000008755	TLNRD1 (ENSOMEG00000008783)	mesd (ENSOMEG00000008799)	CEMIP (ENSOMEG00000008862)	ENSOMEG00000008884	ENSOMEG00000008893	ENSOMEG00000008905	ENSOMEG00000008911	ENSOMEG00000008930
Oryzias_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a ##22
Chinese medaka	MODERN SPECIES	2012																ENSOSIG00000001865 ##22
Cyprinodontiformes	ANCESTRAL SPECIES	69					ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198
Cyprinodontoidei	ANCESTRAL SPECIES	6	ENSGT00390000013104	ENSGT00940000177138	ENSGT00960000186729	ENSGT00940000156076.a.b	ENSGT00940000177923	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a	ENSGT00490000043434
Poeciliinae	ANCESTRAL SPECIES	13	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a	ENSGT00490000043434
Poecilia	ANCESTRAL SPECIES	4	ENSGT00940000161629.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a	ENSGT00490000043434
NAME_6	ANCESTRAL SPECIES	156	ENSGT00390000013104	ENSGT00940000177138	ENSGT00960000186729	ENSGT00940000156076.a.b	ENSGT00940000156076.a.a.a.b.a.a	ENSGT00940000163235.E.k.a.c.a	ENSGT00940000177923	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815.k	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a
Sailfin molly	MODERN SPECIES	1033													ENSPLAG00000010145	asb7 (ENSPLAG00000010129)	ENSPLAG00000010121	CERS3 (ENSPLAG00000010079) ##22	ADAMTS17 (ENSPLAG00000010055)	shcbp1 (ENSPLAG00000010010)	ENSPLAG00000009998	ANO9 (ENSPLAG00000009978)	PKP3 (ENSPLAG00000009958)	cd81a (ENSPLAG00000009950)	tph1b (ENSPLAG00000009921)
Amazon molly	MODERN SPECIES	469	rasl12 (ENSPFOG00000008849)	ENSPFOG00000021758	KBTBD13 (ENSPFOG00000019978)	UBAP1L (ENSPFOG00000008885)	pdcd7 (ENSPFOG00000008898)	spg21 (ENSPFOG00000008936)	tollip (ENSPFOG00000009002)	ENSPFOG00000009071	snrpa1 (ENSPFOG00000009373)	selenos (ENSPFOG00000009521)	chsy1 (ENSPFOG00000009614)	LRRK1 (ENSPFOG00000009664)	aldh1a3 (ENSPFOG00000010138)	asb7 (ENSPFOG00000010372)	ENSPFOG00000022632	CERS3 (ENSPFOG00000024400) ##22	ADAMTS17 (ENSPFOG00000010391)	shcbp1 (ENSPFOG00000010794)	ENSPFOG00000022850	ANO9 (ENSPFOG00000010944)	PKP3 (ENSPFOG00000011157)	cd81a (ENSPFOG00000011199)	tph1b (ENSPFOG00000011276)	AP2A2 (ENSPFOG00000011469)	si:ch211-260e23.8 (ENSPFOG00000011738)	si:ch211-260e23.9 (ENSPFOG00000011757)	zgc:162297 (ENSPFOG00000011770)	ccne1 (ENSPFOG00000011801)	ZNF536 (ENSPFOG00000011945)
Guppy	MODERN SPECIES	455	rasl12 (ENSPREG00000002022)	KBTBD13 (ENSPREG00000002029)	UBAP1L (ENSPREG00000002034)	pdcd7 (ENSPREG00000002039)	spg21 (ENSPREG00000002052)	tollip (ENSPREG00000002199)	ENSPREG00000002226	ENSPREG00000002244	ENSPREG00000002265	snrpa1 (ENSPREG00000002296)	selenos (ENSPREG00000002323)	chsy1 (ENSPREG00000002339)	ENSPREG00000002364	aldh1a3 (ENSPREG00000002437)	ENSPREG00000002480	CERS3 (ENSPREG00000002486) ##22	ADAMTS17 (ENSPREG00000002523)	shcbp1 (ENSPREG00000002607)	ENSPREG00000002616	ANO9 (ENSPREG00000002635)	PKP3 (ENSPREG00000002677)	cd81a (ENSPREG00000002691)	tph1b (ENSPREG00000002705)	AP2A2 (ENSPREG00000002738)	si:ch211-260e23.8 (ENSPREG00000002800)	zgc:162297 (ENSPREG00000002811)	si:ch211-260e23.9 (ENSPREG00000002819)	ccne1 (ENSPREG00000002831)	ZNF536 (ENSPREG00000002877)	tshz3b (ENSPREG00000002892)	ZNF507 (ENSPREG00000002931)
Platyfish	MODERN SPECIES	18	rasl12 (ENSXMAG00000028162)	KBTBD13 (ENSXMAG00000020023)	UBAP1L (ENSXMAG00000023311)	pdcd7 (ENSXMAG00000021952)	spg21 (ENSXMAG00000011516)	tollip (ENSXMAG00000010882)	ENSXMAG00000024389	ENSXMAG00000001474	snrpa1 (ENSXMAG00000001455)	selenos (ENSXMAG00000001446)	chsy1 (ENSXMAG00000001439)	ENSXMAG00000001400	aldh1a3 (ENSXMAG00000001303)	asb7 (ENSXMAG00000001275)	ENSXMAG00000001272	CERS3 (ENSXMAG00000001224) ##22	ADAMTS17 (ENSXMAG00000001177)	shcbp1 (ENSXMAG00000001155)	ENSXMAG00000022390	ANO9 (ENSXMAG00000001137)	PKP3 (ENSXMAG00000029924)	cd81a (ENSXMAG00000023163)	tph1b (ENSXMAG00000001087)	AP2A2 (ENSXMAG00000001043)	si:ch211-260e23.8 (ENSXMAG00000001040)	si:ch211-260e23.9 (ENSXMAG00000027644)	zgc:162297 (ENSXMAG00000025425)	ccne1 (ENSXMAG00000001005)	ENSXMAG00000029430	ZNF536 (ENSXMAG00000000995)	ENSXMAG00000023398
NAME_4	ANCESTRAL SPECIES	139	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000007857	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000156076.a.b	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00940000166163	ENSGT00940000171378	ENSGT00940000158300.f	ENSGT00940000159515.c.b	ENSGT00940000158805.a	ENSGT00950000182885.A.a.e	ENSGT00950000182838.A.a.b	ENSGT00390000009077.c	ENSGT00530000063829.B	ENSGT00390000006020	ENSGT00940000156256	ENSGT00940000156397.a.a	ENSGT00950000183051.b.a	ENSGT00490000043434
Sheepshead minnow	MODERN SPECIES	734					aarsd1 (ENSCVAG00000018616)	ptges3l (ENSCVAG00000018627)	kat7b (ENSCVAG00000018705)	ENSCVAG00000018719	dlx4b (ENSCVAG00000018735)	dlx3b (ENSCVAG00000018749)	ENSCVAG00000018761	eif2ak1 (ENSCVAG00000018782)	PMS2 (ENSCVAG00000018884)	ccz1 (ENSCVAG00000018954)	ENSCVAG00000018968	ENSCVAG00000019001 ##22	ADAMTS17 (ENSCVAG00000019188)	shcbp1 (ENSCVAG00000019201)
Mummichog	MODERN SPECIES	2189	rasl12 (ENSFHEG00000019575)	KBTBD13 (ENSFHEG00000019551)	ENSFHEG00000019529	pdcd7 (ENSFHEG00000019520)	spg21 (ENSFHEG00000019516)	tollip (ENSFHEG00000019466)	ENSFHEG00000000499	ENSFHEG00000000584	snrpa1 (ENSFHEG00000000495)	selenos (ENSFHEG00000019284)	chsy1 (ENSFHEG00000019282)	LRRK1 (ENSFHEG00000019263)	aldh1a3 (ENSFHEG00000019231)	asb7 (ENSFHEG00000019192)	ENSFHEG00000019181	CERS3 (ENSFHEG00000019171) ##22	ADAMTS17 (ENSFHEG00000019145)	shcbp1 (ENSFHEG00000019051)	ENSFHEG00000019045	ANO9 (ENSFHEG00000019026)	PKP3 (ENSFHEG00000019014)	cd81a (ENSFHEG00000019003)	tph1b (ENSFHEG00000018995)	AP2A2 (ENSFHEG00000018918)	si:ch211-260e23.8 (ENSFHEG00000000481)	si:ch211-260e23.9 (ENSFHEG00000018776)	zgc:162297 (ENSFHEG00000018756)	ccne1 (ENSFHEG00000018737)	ZNF536 (ENSFHEG00000018709)	tshz3b (ENSFHEG00000018701)	ZNF507 (ENSFHEG00000018679)
Aplocheiloidei	ANCESTRAL SPECIES	321																ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646
Mangrove rivulus	MODERN SPECIES	588																ENSKMAG00000005305 ##22	ADAMTS17 (ENSKMAG00000005334)	MINAR1 (ENSKMAG00000005361)	mthfs (ENSKMAG00000005381)	fah (ENSKMAG00000005403)
Ovalentaria_B	ANCESTRAL SPECIES	40	ENSGT00940000161356	ENSGT00940000157816.a.b	ENSGT00940000166897	ENSGT00940000161128	ENSGT00940000158825.c	ENSGT00940000160601	ENSGT01090000260003.a.a	ENSGT00940000157182.g.b	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00920000150778
Pomacentridae	ANCESTRAL SPECIES	160											ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a
Pomacentridae_A	ANCESTRAL SPECIES	96	ENSGT00940000156291.e	ENSGT00940000156205.g	ENSGT00940000159578.eb.a	ENSGT00730000111020.a	ENSGT00940000166619	ENSGT00940000153837.a.b	ENSGT00940000156469.b	ENSGT00940000160021	ENSGT01080000257495	ENSGT00940000154688.a.b.a	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT01100000266271	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000158007.f
Amphiprion	ANCESTRAL SPECIES	117	ENSGT00940000156291.e	ENSGT00940000156205.g	ENSGT00940000159578.eb.a	ENSGT00730000111020.a	ENSGT00940000166619	ENSGT00940000153837.a.b	ENSGT00940000156469.b	ENSGT00940000160021	ENSGT01080000257495	ENSGT00940000154688.a.b.a	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00390000008646	ENSGT01100000266271	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000158007.f	ENSGT00940000160013
Orange clownfish	MODERN SPECIES		ENSAPEG00000000883	ENSAPEG00000000863	ENSAPEG00000000728	zgc:165481 (ENSAPEG00000000715)	cep89 (ENSAPEG00000000700)	rhpn2 (ENSAPEG00000000620)	slc7a10a (ENSAPEG00000000535)	lrp3 (ENSAPEG00000000499)	ENSAPEG00000000484	DNAJA2 (ENSAPEG00000000444)	chsy1 (ENSAPEG00000000419)	LRRK1 (ENSAPEG00000000288)	aldh1a3 (ENSAPEG00000000286)	asb7 (ENSAPEG00000000283)	ENSAPEG00000000281	CERS3 (ENSAPEG00000000280) ##22	ADAMTS17 (ENSAPEG00000000279)	MINAR1 (ENSAPEG00000000278)	mthfs (ENSAPEG00000000277)	fah (ENSAPEG00000000276)	ENSAPEG00000000275	arnt2 (ENSAPEG00000000274)	ENSAPEG00000000273	abhd17c (ENSAPEG00000000272)	CEMIP (ENSAPEG00000000271)	mesd (ENSAPEG00000000270)	TLNRD1 (ENSAPEG00000000269)	ENSAPEG00000000268	ENSAPEG00000000267	STARD5 (ENSAPEG00000000266)	TMC3 (ENSAPEG00000000265)
Clown anemonefish	MODERN SPECIES	2006												ENSAOCG00000013273	ENSAOCG00000013290	asb7 (ENSAOCG00000013300)	ENSAOCG00000013339	CERS3 (ENSAOCG00000013385) ##22	ADAMTS17 (ENSAOCG00000013472)	MINAR1 (ENSAOCG00000013488)	mthfs (ENSAOCG00000013498)	fah (ENSAOCG00000013557)	arnt2 (ENSAOCG00000014557)	abhd17c (ENSAOCG00000014745)
Spiny chromis	MODERN SPECIES	1015											LRRK1 (ENSAPOG00000022162)	aldh1a3 (ENSAPOG00000022228)	asb7 (ENSAPOG00000022243)	ENSAPOG00000022286	ENSAPOG00000022303	CERS3 (ENSAPOG00000022314) ##22	ADAMTS17 (ENSAPOG00000022417)
Bicolor damselfish	MODERN SPECIES	2321													asb7 (ENSSPAG00000010742)	ENSSPAG00000010732	ENSSPAG00000010723	CERS3 (ENSSPAG00000010704) ##22
Cichlidae	ANCESTRAL SPECIES	66	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000165193	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00940000156178.A
Pseudocrenilabrinae	ANCESTRAL SPECIES	28	ENSGT00390000002105	ENSGT00940000161051.a.a.b.b.b.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000177923	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	32	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000177138	ENSGT00940000156076.a.b	ENSGT00940000177923	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159
Haplochromini	ANCESTRAL SPECIES	34	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000156076.a.a.a.b.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a	ENSGT00940000164871.a.a.f.b	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a	ENSGT00940000156178.A	ENSGT00940000159159
Burton s mouthbrooder	MODERN SPECIES	733												ENSHBUG00000007597	ENSHBUG00000007614	asb7 (ENSHBUG00000007626)	ENSHBUG00000007642	CERS3 (ENSHBUG00000007666) ##22	mthfs (ENSHBUG00000007697)	MINAR1 (ENSHBUG00000007713)	ADAMTS17 (ENSHBUG00000007813)	fah (ENSHBUG00000007910)	ENSHBUG00000007937	arnt2 (ENSHBUG00000008034)	ENSHBUG00000008053
Haplochromini_A	ANCESTRAL SPECIES	39	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a	ENSGT00940000164871.a.a.f.b	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000156178.A	ENSGT00940000159159
Haplochromini_B	ANCESTRAL SPECIES	77	ENSGT00390000002105	ENSGT00940000163716.c.a.a.b	ENSGT00910000144335	ENSGT00390000000020.b	ENSGT00390000013104	ENSGT00940000163235.A.a.a.b	ENSGT00940000162219	ENSGT00940000163235.E.k.a	ENSGT00940000164871.a.a.f.b	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00390000017791	ENSGT00530000063851.a.a	ENSGT00940000158773	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00390000006876	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00940000161051.a.a.b.b.b.a.d	ENSGT00940000161051.a.a.b.b.b.a.c	ENSGT00940000156178.A
Eastern happy	MODERN SPECIES		zgc:153993 (ENSACLG00000000006)	ano1a (ENSACLG00000000007)	ENSACLG00000000008	ENSACLG00000000009	TLNRD1 (ENSACLG00000000010)	mtch2 (ENSACLG00000000011)	tollip (ENSACLG00000000012)	ENSACLG00000000014	ENSACLG00000000015	snrpa1 (ENSACLG00000000016)	selenos (ENSACLG00000000017)	chsy1 (ENSACLG00000000018)	LRRK1 (ENSACLG00000000019)	asb7 (ENSACLG00000000020)	ENSACLG00000000021	CERS3 (ENSACLG00000000022) ##22	mthfs (ENSACLG00000000023)	MINAR1 (ENSACLG00000000024)	ADAMTS17 (ENSACLG00000000025)	fah (ENSACLG00000000035)	ENSACLG00000000083	arnt2 (ENSACLG00000000092)	abhd17c (ENSACLG00000000169)	CEMIP (ENSACLG00000000193)	ENSACLG00000000373	mesd (ENSACLG00000000378)	ENSACLG00000000415	ENSACLG00000000420 ##32	ankdd1a (ENSACLG00000000553)	npsn (ENSACLG00000000590)	ENSACLG00000001012
Zebra mbuna	MODERN SPECIES	41									ENSMZEG00005020935	snrpa1 (ENSMZEG00005020928)	selenos (ENSMZEG00005020926)	chsy1 (ENSMZEG00005020923)	LRRK1 (ENSMZEG00005020911)	asb7 (ENSMZEG00005020904)	ENSMZEG00005020902	CERS3 (ENSMZEG00005020898) ##22	mthfs (ENSMZEG00005020895)	MINAR1 (ENSMZEG00005020894)	ADAMTS17 (ENSMZEG00005020883)	fah (ENSMZEG00005020867)	ENSMZEG00005020861	arnt2 (ENSMZEG00005020844)
P. nyererei	MODERN SPECIES	419	ENSPNYG00000003639	TLNRD1 (ENSPNYG00000003631)	mtch2 (ENSPNYG00000003619)	tollip (ENSPNYG00000003579)	ENSPNYG00000003569	ENSPNYG00000003526	ENSPNYG00000003505	ENSPNYG00000003491	ENSPNYG00000003465	snrpa1 (ENSPNYG00000003422)	selenos (ENSPNYG00000003410)	chsy1 (ENSPNYG00000003398)	ENSPNYG00000003382	asb7 (ENSPNYG00000003369)	ENSPNYG00000003355	CERS3 (ENSPNYG00000003323) ##22	mthfs (ENSPNYG00000003308)	MINAR1 (ENSPNYG00000003283)	ADAMTS17 (ENSPNYG00000003213)	fah (ENSPNYG00000003172)	ENSPNYG00000003156	arnt2 (ENSPNYG00000003068)	abhd17c (ENSPNYG00000003056)	CEMIP (ENSPNYG00000002991)	mesd (ENSPNYG00000002968)	ENSPNYG00000002961	ENSPNYG00000002952 ##32	ankdd1a (ENSPNYG00000002920)	npsn (ENSPNYG00000002893)	ENSPNYG00000002876	STARD5 (ENSPNYG00000002841)
Nile tilapia	MODERN SPECIES		ENSONIG00000028743	cd82a (ENSONIG00000015057)	kmt5b (ENSONIG00000015056)	pole3 (ENSONIG00000033969)	TMC3 (ENSONIG00000015050)	STARD5 (ENSONIG00000015047)	ENSONIG00000015044	ENSONIG00000015038	ankdd1a (ENSONIG00000015036)	ENSONIG00000038449	ENSONIG00000037983	ENSONIG00000032648	asb7 (ENSONIG00000039807)	ENSONIG00000013810	ENSONIG00000028048	CERS3 (ENSONIG00000013809) ##22	mthfs (ENSONIG00000013807)	ENSONIG00000033071	MINAR1 (ENSONIG00000013805)	ADAMTS17 (ENSONIG00000013802)	ENSONIG00000034634	ENSONIG00000028995	LRRK1 (ENSONIG00000005479)	spg21 (ENSONIG00000005401)	shcbp1 (ENSONIG00000005403)	ENSONIG00000039376	ENSONIG00000028794	ANO9 (ENSONIG00000005410)	ENSONIG00000041258	vps35 (ENSONIG00000005417)	vstm2b (ENSONIG00000005423)
Midas cichlid	MODERN SPECIES	784										chsy1 (ENSACIG00000000324)	ENSACIG00000000192	aldh1a3 (ENSACIG00000023938)	asb7 (ENSACIG00000023937)	asb7 (ENSACIG00000023935)	ENSACIG00000023934	CERS3 (ENSACIG00000023933) ##22	mthfs (ENSACIG00000023932)	MINAR1 (ENSACIG00000023930)	ADAMTS17 (ENSACIG00000023926)	fah (ENSACIG00000023920)	pex16 (ENSACIG00000023915)	arfgap2 (ENSACIG00000023912)	ppfia1 (ENSACIG00000023909)	CTTN (ENSACIG00000023897)	ENSACIG00000023888	ANO9 (ENSACIG00000023881)	zgc:92818 (ENSACIG00000023876)	vps35 (ENSACIG00000023866)	mtfmt (ENSACIG00000023849)	celf1 (ENSACIG00000023843)	ENSACIG00000023839
Pinecone sodierfish	MODERN SPECIES	17	c6ast3 (ENSMMDG00005005561)	ENSMMDG00005005546	c6ast1 (ENSMMDG00005005520)	mtch2 (ENSMMDG00005005479)	ENSMMDG00005005474	ankdd1a (ENSMMDG00005005473)	ENSMMDG00005005471 ##32	PCSK6 (ENSMMDG00005004779)	snrpa1 (ENSMMDG00005004732)	selenos (ENSMMDG00005004725)	chsy1 (ENSMMDG00005004721)	LRRK1 (ENSMMDG00005004637)	aldh1a3 (ENSMMDG00005004593)	asb7 (ENSMMDG00005004589)	ENSMMDG00005004582	CERS3 (ENSMMDG00005004572) ##22	ADAMTS17 (ENSMMDG00005004550)	MINAR1 (ENSMMDG00005004530)	mthfs (ENSMMDG00005004517)	ZFAND6 (ENSMMDG00005004507)	fah (ENSMMDG00005004489)	ENSMMDG00005004479	arnt2 (ENSMMDG00005003957)	abhd17c (ENSMMDG00005003931)	ENSMMDG00005003929	CEMIP (ENSMMDG00005003918)	mesd (ENSMMDG00005003905)	TLNRD1 (ENSMMDG00005003900)	IL16 (ENSMMDG00005003883)	STARD5 (ENSMMDG00005003874)	TMC3 (ENSMMDG00005003861)
Cod	MODERN SPECIES	5	wdsub1 (ENSGMOG00000000781)	ENSGMOG00000000794	rasl12 (ENSGMOG00000022754)	pdcd7 (ENSGMOG00000023490)	spg21 (ENSGMOG00000004266)	ankdd1a (ENSGMOG00000004409)	ENSGMOG00000004432 ##32	PCSK6 (ENSGMOG00000004465)	selenos (ENSGMOG00000004540)	chsy1 (ENSGMOG00000004552)	ENSGMOG00000015361	ENSGMOG00000028780	aldh1a3 (ENSGMOG00000017260)	asb7 (ENSGMOG00000017250)	ENSGMOG00000017201	CERS3 (ENSGMOG00000016733) ##22	ADAMTS17 (ENSGMOG00000010476)	ENSGMOG00000027610	MINAR1 (ENSGMOG00000027554)	mthfs (ENSGMOG00000018322)	zfand6 (ENSGMOG00000024254)	fah (ENSGMOG00000018302)	ENSGMOG00000034324	ENSGMOG00000032066	arnt2 (ENSGMOG00000014557)	abhd17c (ENSGMOG00000027250)	CEMIP (ENSGMOG00000015032)	mesd (ENSGMOG00000028861)	TLNRD1 (ENSGMOG00000015091)	ENSGMOG00000000502	STARD5 (ENSGMOG00000000564)
Protacanthopterygii	ANCESTRAL SPECIES	2	ENSGT00940000158268.a	ENSGT00440000037417.A	ENSGT00950000182976.a.b.d	ENSGT00390000006758.b.k.a	ENSGT00940000155960.b	ENSGT00530000063472.b.b.a.b.a.a	ENSGT00940000175917.c	ENSGT00940000157530.b.b	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g	ENSGT00940000160363	ENSGT00940000158815.g.b	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a ##22	ENSGT00940000158773	ENSGT00530000063851.a.a	ENSGT00390000017791	ENSGT00940000160833	ENSGT00390000008646	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a	ENSGT00390000000993	ENSGT00910000144335	ENSGT00940000156178.A	ENSGT00940000159159	ENSGT01050000244942.a	ENSGT00940000160013	ENSGT00550000074806
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	2221															ENSGT00990000210243	ENSGT01030000234515.a.b.a.b.a.c.a.a ##22
Salmoninae_a	ANCESTRAL SPECIES	1086															ENSGT00990000210243	ENSGT01030000234515.a.b.a.b.a.c.a.a ##22
Oncorhynchus	ANCESTRAL SPECIES	901															ENSGT00990000210243	ENSGT01030000234515.a.b.a.b.a.c.a.a ##22
Oncorhynchus_a	ANCESTRAL SPECIES	99			ENSGT00940000165480.a	ENSGT00940000165480.b	ENSGT00940000157530.b.a	ENSGT00940000164679.f	ENSGT00940000157530.b.b	ENSGT00940000153289.b.ib.a.b	ENSGT00940000154311.a.b.cb.a.a.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g	ENSGT00940000160363	ENSGT00940000158815.g.b	ENSGT00940000158068.o	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.c.a.a ##22	ENSGT00940000158773	ENSGT00940000153942.b.i.b	ENSGT00390000012913.b.f	ENSGT00940000156756.k	ENSGT00940000159506.g.b	ENSGT00530000063760.a ##32	ENSGT00940000154170.B.f.a	ENSGT00390000007857.f.b	ENSGT00390000007857.f.a.a	ENSGT00390000017625.n.b	ENSGT00390000017392	ENSGT00390000008092.b.a.b	ENSGT00940000161629.a	ENSGT00940000160167.g.b	ENSGT00390000017828.e
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	192												ENSOKIG00005044983	aldh1a3 (ENSOKIG00005044032)	asb7 (ENSOKIG00005043932)	ENSOKIG00005043924	CERS3 (ENSOKIG00005043900) ##22
Coho salmon	MODERN SPECIES	32	ENSOKIG00005047717	ENSOKIG00005047706	guca1g (ENSOKIG00005047698)	ENSOKIG00005047667	ENSOKIG00005047652	ENSOKIG00005047605	ENSOKIG00005047562	ENSOKIG00005047526	ENSOKIG00005047509	selenos (ENSOKIG00005047502)	chsy1 (ENSOKIG00005047488)	LRRK1 (ENSOKIG00005047360)	aldh1a3 (ENSOKIG00005046328)	asb7 (ENSOKIG00005046202)	ENSOKIG00005046174	CERS3 (ENSOKIG00005046158) ##22	ADAMTS17 (ENSOKIG00005045967)	ENSOKIG00005045950	mthfs (ENSOKIG00005045946)	MINAR1 (ENSOKIG00005045934)	ENSOKIG00005045925	ZFAND6 (ENSOKIG00005045919)	ENSOKIG00005045863	ENSOKIG00005045837	ENSOKIG00005045774	ENSOKIG00005045754	ENSOKIG00005045751	ENSOKIG00005045746	ENSOKIG00005045736	ARNT2 (ENSOKIG00005043253)	ABHD17C (ENSOKIG00005043069)
Rainbow trout	MODERN SPECIES	27	ENSOMYG00000033777	ENSOMYG00000033772	ENSOMYG00000051810	ENSOMYG00000062535	ENSOMYG00000054086	ENSOMYG00000033872	ENSOMYG00000058918	selenos (ENSOMYG00000031299)	ENSOMYG00000057388	chsy1 (ENSOMYG00000048314)	ENSOMYG00000054372	LRRK1 (ENSOMYG00000020358)	aldh1a3 (ENSOMYG00000050834)	asb7 (ENSOMYG00000035366)	ENSOMYG00000035355	CERS3 (ENSOMYG00000050517) ##22	ENSOMYG00000059479	ADAMTS17 (ENSOMYG00000051730)	ENSOMYG00000073422	MINAR1 (ENSOMYG00000064868)	ENSOMYG00000058503	mthfs (ENSOMYG00000053972)	ZFAND6 (ENSOMYG00000068732)	fah (ENSOMYG00000032791)	ENSOMYG00000068815	ENSOMYG00000019894	arnt2 (ENSOMYG00000048132)	ABHD17C (ENSOMYG00000020316)	CEMIP (ENSOMYG00000020049)	mesd (ENSOMYG00000020003)	TLNRD1 (ENSOMYG00000071469)
Huchen	MODERN SPECIES	7415																ENSHHUG00000001411 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.a.b ##22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	5562												ENSHHUG00000012962	asb7 (ENSHHUG00000012953)	ENSHHUG00000012939	ENSHHUG00000012932	ENSHHUG00000012927 ##22
Huchen	MODERN SPECIES	9301																ENSHHUG00000038057 ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.a.b ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.a.b ##22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.a.b ##22
Chinook salmon	MODERN SPECIES	1578																ENSOTSG00005020141 ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.b ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a.b.a.c.b ##22
Oncorhynchus	ANCESTRAL SPECIES		ENSGT00730000111007.a.b	ENSGT00940000165480.a	ENSGT00940000165480.b	ENSGT00940000157530.b.a	ENSGT00940000164679.f	ENSGT00940000157530.b.b	ENSGT00940000153289.b.ib.a.b	ENSGT00940000154311.a.b.cb.a.a.b	ENSGT00940000153289.b.ib.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g	ENSGT00940000160363	ENSGT00940000158815.g.b	ENSGT00940000158068.o	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.c.b ##22	ENSGT00940000158773	ENSGT00940000163999.a.c.a.a	ENSGT00940000153942.b.i.b	ENSGT00390000012913.b.f	ENSGT00940000156756.k	ENSGT00940000159506.h.a.a.a	ENSGT00530000063760.a ##32	ENSGT00940000154170.B.f.a	ENSGT00390000007857.f.b	ENSGT00940000154170.B.f.b	ENSGT00390000007857.f.a.b	ENSGT00390000007857.f.a.a	ENSGT00390000017625.n.b	ENSGT00390000017392	ENSGT00390000008092.b.a.b
Rainbow trout	MODERN SPECIES	18	ENSOMYG00000034113	ENSOMYG00000072723	ENSOMYG00000034088	ENSOMYG00000034075	ENSOMYG00000034050	ENSOMYG00000034040	ENSOMYG00000077317	ENSOMYG00000033339	selenos (ENSOMYG00000033848)	chsy1 (ENSOMYG00000058618)	ENSOMYG00000067372	LRRK1 (ENSOMYG00000053577)	aldh1a3 (ENSOMYG00000033224)	asb7 (ENSOMYG00000022214)	ENSOMYG00000069453	CERS3 (ENSOMYG00000033114) ##22	ADAMTS17 (ENSOMYG00000060547)	ENSOMYG00000033023	MINAR1 (ENSOMYG00000033035)	ENSOMYG00000056915	ENSOMYG00000067173	mthfs (ENSOMYG00000032954)	ZFAND6 (ENSOMYG00000032881)	fah (ENSOMYG00000032817)	ENSOMYG00000040218	ENSOMYG00000032799	arnt2 (ENSOMYG00000060131)	ABHD17C (ENSOMYG00000049618)	ENSOMYG00000052830	CEMIP (ENSOMYG00000020283)	mesd (ENSOMYG00000056837)
Huchen	MODERN SPECIES	6496																ENSHHUG00000003001 ##22
Salmoninae	ANCESTRAL SPECIES	1	ENSGT00950000182976.a.b.d	ENSGT00390000006758.b.k.a	ENSGT00940000155960.b	ENSGT00530000063472.b.b.a.b.a.a	ENSGT00940000175917.c	ENSGT00940000157530.b.b	ENSGT00940000153289.b.hb	ENSGT00940000154311.a.b.cb.a.a.b	ENSGT00940000153289.b.ib	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g	ENSGT00940000160363	ENSGT00940000158815.g.b	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.d ##22	ENSGT00940000158773	ENSGT00530000063851.a.a.h	ENSGT00390000017791.d.b.a	ENSGT00940000160833	ENSGT00390000008646.d	ENSGT00940000158198	ENSGT00940000159424	ENSGT00940000153636.a.g	ENSGT00390000000993	ENSGT00910000144335.m.b	ENSGT00940000156178.A.w.a	ENSGT00940000159159.f.a	ENSGT01050000244942.a.g	ENSGT00940000160013	ENSGT00550000074806
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00940000165480.a	ENSGT00940000165480.b	ENSGT00940000157530.b.a	ENSGT00940000164679.f	ENSGT00940000157530.b.b	ENSGT00940000153289.b.ib.a.b	ENSGT00940000153289.b.hb	ENSGT00940000154311.a.b.cb.a.a.b	ENSGT00940000153289.b.ib.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g	ENSGT00940000160363	ENSGT00940000158815.g.b	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.d ##22	ENSGT00940000158773	ENSGT00530000063851.a.a.h	ENSGT00390000017791.d.b.a.b	ENSGT00940000160833	ENSGT00390000008646.d	ENSGT01100000263475.f.a.d.a.b.a.b.b	ENSGT00980000198488	ENSGT01100000263475.f.a.d.a.a.a.a	ENSGT00940000158198.q.a.b	ENSGT00940000159424.t.b	ENSGT00940000153636.a.g	ENSGT00390000000993	ENSGT00910000144335.m.b	ENSGT00940000156178.A.w.a	ENSGT00940000159159.f.a
Salmo	ANCESTRAL SPECIES	98	ENSGT00940000165480.a	ENSGT00940000165480.b	ENSGT00940000157530.b.a.c	ENSGT00940000164679.f.a	ENSGT00940000157530.b.b	ENSGT00940000153289.b.ib.a.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.g.b	ENSGT01100000264456.a	ENSGT01050000244857.C.a.a.g.a	ENSGT00940000160363	ENSGT00940000158815.g.b.e	ENSGT00940000158815.g.a.a.a	ENSGT00940000158068.m	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b.a.d ##22	ENSGT00940000158773.h	ENSGT00940000163999.a.c.a.a	ENSGT00940000160833.h	ENSGT00390000008646.d.c	ENSGT01100000263475.f.a.d.a.a.b.a	ENSGT01100000263475.f.a.d.a.b.b.b	ENSGT01100000263475.f.a.d.a.a.a.a	ENSGT00940000158198.q.a.b	ENSGT00940000159424.t.b	ENSGT00940000153636.a.g	ENSGT00390000000993.t	ENSGT00910000144335.m.b	ENSGT00940000156178.A.w.a.a	ENSGT00940000159159.e.a	ENSGT01050000244942.a.g
River trout	DUPLICATION
River trout	MODERN SPECIES	21	ENSSTUG00000046516	guca1g (ENSSTUG00000046562)	ENSSTUG00000046575	ENSSTUG00000046599	ENSSTUG00000046673	snrpa1 (ENSSTUG00000046680)	ENSSTUG00000046717	ENSSTUG00000046725	selenos (ENSSTUG00000046730)	chsy1 (ENSSTUG00000046737)	LRRK1 (ENSSTUG00000046768)	aldh1a3 (ENSSTUG00000047218)	ENSSTUG00000047660	asb7 (ENSSTUG00000047663)	ENSSTUG00000047666	CERS3 (ENSSTUG00000047673) ##22	ADAMTS17 (ENSSTUG00000047696)	ENSSTUG00000047764	MINAR1 (ENSSTUG00000047766)	tlr22 (ENSSTUG00000047770)	ENSSTUG00000047792	mthfs (ENSSTUG00000047796)	ZFAND6 (ENSSTUG00000047808)	fah (ENSSTUG00000047826)	ENSSTUG00000048094	arnt2 (ENSSTUG00000048130)	ABHD17C (ENSSTUG00000048550)	CEMIP (ENSSTUG00000048576)	mesd (ENSSTUG00000048671)	TLNRD1 (ENSSTUG00000048674)	IL16 (ENSSTUG00000048678)
River trout	MODERN SPECIES	3	ENSSTUG00000025007	ENSSTUG00000024976	guca1g (ENSSTUG00000024959)	ENSSTUG00000024923	ENSSTUG00000024911	ENSSTUG00000024901	snrpa1 (ENSSTUG00000024834)	selenos (ENSSTUG00000024803)	chsy1 (ENSSTUG00000024793)	ENSSTUG00000024780	ENSSTUG00000024769	LRRK1 (ENSSTUG00000024459)	aldh1a3 (ENSSTUG00000023012)	asb7 (ENSSTUG00000022957)	ENSSTUG00000022910	CERS3 (ENSSTUG00000022890) ##22	ADAMTS17 (ENSSTUG00000022589)	MINAR1 (ENSSTUG00000022548)	mthfs (ENSSTUG00000022541)	ZFAND6 (ENSSTUG00000022527)	fah (ENSSTUG00000022437)	ENSSTUG00000022431	ENSSTUG00000022423	ENSSTUG00000022415	ENSSTUG00000022385	ENSSTUG00000022376	arnt2 (ENSSTUG00000019281)	ABHD17C (ENSSTUG00000019207)	ENSSTUG00000019201	CEMIP (ENSSTUG00000018930)	mesd (ENSSTUG00000018904)
Atlantic salmon	MODERN SPECIES	2	ENSSSAG00000091414	ENSSSAG00000087024	ENSSSAG00000064881	ENSSSAG00000061437	ENSSSAG00000009724	ENSSSAG00000105270	U2A (ENSSSAG00000009672)	ENSSSAG00000107934	chsy1 (ENSSSAG00000115889)	ENSSSAG00000091862	LRRK1 (ENSSSAG00000009534)	aldh1a3 (ENSSSAG00000004383)	asb7 (ENSSSAG00000039178)	ENSSSAG00000085452	ENSSSAG00000038981	CERS3 (ENSSSAG00000116956) ##22	ADAMTS17 (ENSSSAG00000088562)	MINAR1 (ENSSSAG00000004207)	mthfs (ENSSSAG00000115775)	ZFAND6 (ENSSSAG00000004255)	fah (ENSSSAG00000103199)	ENSSSAG00000042091	ENSSSAG00000009273	ENSSSAG00000120826	arnt2 (ENSSSAG00000096323)	ABHD17C (ENSSSAG00000121633)	CEMIP (ENSSSAG00000114128)	mesd1 (ENSSSAG00000107398)	mesd (ENSSSAG00000005579)	IL16 (ENSSSAG00000054402)	star5 (ENSSSAG00000043794)
Northern pike	MODERN SPECIES	1	cstf3 (ENSELUG00000023393)	hipk3b (ENSELUG00000023600)	ENSELUG00000031037	KIAA1549L (ENSELUG00000023667)	ENSELUG00000026057	ENSELUG00000023845	ENSELUG00000027767	ENSELUG00000023862	snrpa1 (ENSELUG00000023898)	selenos (ENSELUG00000023905)	chsy1 (ENSELUG00000023924)	LRRK1 (ENSELUG00000024033)	aldh1a3 (ENSELUG00000024111)	asb7 (ENSELUG00000024128)	ENSELUG00000024164	CERS3 (ENSELUG00000024273) ##22	ADAMTS17 (ENSELUG00000024363)	MINAR1 (ENSELUG00000024388)	mthfs (ENSELUG00000024394)	ZFAND6 (ENSELUG00000024431)	fah (ENSELUG00000024514)	ENSELUG00000030692	ENSELUG00000024562	ENSELUG00000030189	ENSELUG00000027308	arnt2 (ENSELUG00000024606)	abhd17c (ENSELUG00000024626)	CEMIP (ENSELUG00000024634)	mesd (ENSELUG00000002448)	TLNRD1 (ENSELUG00000002449)	IL16 (ENSELUG00000002473)
Clupeocephala	ANCESTRAL SPECIES	558													ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22
Otomorpha	ANCESTRAL SPECIES	594												ENSGT00390000018488	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22
Otophysi	ANCESTRAL SPECIES	33	ENSGT00940000154380.a.a.a	ENSGT01050000244956.a.b	ENSGT00390000009899.b.n	ENSGT01080000257495	ENSGT00940000154688.a.b.b	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000018488	ENSGT00530000063851.a.b	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00940000159670	ENSGT00940000165467	ENSGT00390000002417	ENSGT00940000155394.i.b	ENSGT00390000008749.f	ENSGT00940000160687	ENSGT00390000005075	ENSGT00940000179232	ENSGT00940000156041.d	ENSGT00660000097187	ENSGT00940000156878.i.b.a.a	ENSGT00940000165406	ENSGT00940000156191	ENSGT00940000161995	ENSGT01030000234583.a.a.c.b.b.c.a
Characiphysae	ANCESTRAL SPECIES	25	ENSGT00390000016211	ENSGT00940000154380.a.a.a	ENSGT01050000244956.a.b	ENSGT00390000009899.b.n	ENSGT00940000154688.a.b.b	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000018488	ENSGT00530000063851.a.b	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00940000159670	ENSGT00940000165467	ENSGT00390000002417	ENSGT00940000155394.i.b	ENSGT00390000008749.f	ENSGT00940000160687	ENSGT00390000005075	ENSGT00940000179232	ENSGT00940000156041.d	ENSGT00660000097187	ENSGT00940000156878.i.b.a.a	ENSGT00940000165406	ENSGT00940000156191	ENSGT00940000161995	ENSGT01030000234583.a.a.c.b.b.c.a
Characiphysae_b	ANCESTRAL SPECIES	22	ENSGT00390000016211	ENSGT00940000154380.a.a.a	ENSGT01050000244956.a.b	ENSGT00390000009899.b.n	ENSGT00940000154688.a.b.b	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000018488	ENSGT00530000063851.a.b	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00940000159670	ENSGT00940000165467	ENSGT00390000002417	ENSGT00940000155394.i.b	ENSGT00390000008749.f	ENSGT00940000160687	ENSGT00390000005075	ENSGT00940000179232	ENSGT00940000156041.d	ENSGT00660000097187	ENSGT00940000156878.i.b.a.a.c	ENSGT00940000156191	ENSGT00940000156878.i.b.a.a.d	ENSGT00940000165406	ENSGT00940000161995
Characoidei	ANCESTRAL SPECIES	13	ENSGT00940000154380.a.a.a	ENSGT01050000244956.a.b	ENSGT00390000009899.b.n	ENSGT00940000154688.a.b.b	ENSGT01030000237885	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c	ENSGT00390000004228	ENSGT00390000012630.B	ENSGT00390000018488	ENSGT00530000063851.a.b	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00940000159670	ENSGT00940000165467	ENSGT00390000002417	ENSGT00940000155394.i.b	ENSGT00390000008749.f	ENSGT00940000160687	ENSGT00390000005075	ENSGT00940000179232	ENSGT00940000156041.d	ENSGT00660000097187	ENSGT00940000156878.i.b.a.a.c	ENSGT00940000156878.i.b.a.a.d	ENSGT00940000165406	ENSGT00940000161995	ENSGT01030000234583.a.a.c.b.b.c.a
Mexicana tetra	MODERN SPECIES	9	ENSAMXG00000043614	PPP6R2 (ENSAMXG00000003997)	dnaja2b (ENSAMXG00000004014)	ENSAMXG00000037689	ENSAMXG00000038806	ENSAMXG00000039160	ENSAMXG00000004023	calub (ENSAMXG00000004026)	utp15 (ENSAMXG00000034085)	ENSAMXG00000004032	cfap161 (ENSAMXG00000004037)	ENSAMXG00000039558	cd9a (ENSAMXG00000004046)	vwf (ENSAMXG00000004058)	ANO2 (ENSAMXG00000004089)	cers3b (ENSAMXG00000004106) ##22	ENSAMXG00000004108	ENSAMXG00000034154	ENSAMXG00000004128	ENSAMXG00000004137	ENSAMXG00000004149	ENSAMXG00000004179	pdp2 (ENSAMXG00000025812)	terb1 (ENSAMXG00000004199)	si:dkey-238c7.16 (ENSAMXG00000040977)	ENSAMXG00000030704	ENSAMXG00000035325	ARF5 (ENSAMXG00000038224)	ARF5 (ENSAMXG00000004249)	zgc:77752 (ENSAMXG00000004263)	odf3b (ENSAMXG00000038589)
Red-bellied piranha	MODERN SPECIES		ADM2 (ENSPNAG00000004024)	ENSPNAG00000006549	PPP6R2 (ENSPNAG00000005207)	dnaja2b (ENSPNAG00000004014)	ENSPNAG00000006060	KCP (ENSPNAG00000026062)	ENSPNAG00000003949	calub (ENSPNAG00000025643)	utp15 (ENSPNAG00000025612)	ENSPNAG00000025572	cfap161 (ENSPNAG00000025562)	ENSPNAG00000006057	cd9a (ENSPNAG00000025497)	vwf (ENSPNAG00000006765)	ANO2 (ENSPNAG00000006520)	cers3b (ENSPNAG00000025036) ##22	ENSPNAG00000024995	glipr1b (ENSPNAG00000024971)	ENSPNAG00000024957	ENSPNAG00000024944	ENSPNAG00000024921	ENSPNAG00000024723	terb1 (ENSPNAG00000024641)	pdp2 (ENSPNAG00000024528)	ENSPNAG00000004869	si:dkey-238c7.16 (ENSPNAG00000004961)	si:dkey-30c15.2 (ENSPNAG00000024440)	ARF5 (ENSPNAG00000024427)	ARF5 (ENSPNAG00000024404)	zgc:77752 (ENSPNAG00000024380)	trim35-30 (ENSPNAG00000005090)
Electric eel	MODERN SPECIES	235									utp15 (ENSEEEG00000006901)	ENSEEEG00000006907	cfap161 (ENSEEEG00000006914)	ENSEEEG00000006916	cd9a (ENSEEEG00000006919)	vwf (ENSEEEG00000006946)	ANO2 (ENSEEEG00000007055)	cers3b (ENSEEEG00000007057) ##22	ENSEEEG00000007060	glipr1b (ENSEEEG00000007062)	ENSEEEG00000007064	ENSEEEG00000007065	ENSEEEG00000007067	ENSEEEG00000007068	ENSEEEG00000007071	ENSEEEG00000007074	pdp2 (ENSEEEG00000007077)	ENSEEEG00000007078	si:dkey-238c7.16 (ENSEEEG00000007079)	si:dkey-30c15.2 (ENSEEEG00000007082)	arf5 (ENSEEEG00000007086)	ODF3 (ENSEEEG00000007128)	odf3b (ENSEEEG00000007130)
Channel catfish	MODERN SPECIES	23	ENSIPUG00000005110	PPP6R2 (ENSIPUG00000005069)	dnaja2b (ENSIPUG00000005044)	ENSIPUG00000005034	ENSIPUG00000005021	calub (ENSIPUG00000005000)	utp15 (ENSIPUG00000004917)	ENSIPUG00000004887	cfap161 (ENSIPUG00000004865)	ENSIPUG00000004863	cd9 (ENSIPUG00000004834)	vwf (ENSIPUG00000004753)	ENSIPUG00000004721	ENSIPUG00000004711	ANO2 (ENSIPUG00000004688)	cers3b (ENSIPUG00000004664) ##22	caps2 (ENSIPUG00000004653)	glipr1b (ENSIPUG00000004641)	ENSIPUG00000004635	bbs10 (ENSIPUG00000004627)	ENSIPUG00000004598	ENSIPUG00000004481	terb1 (ENSIPUG00000004409)	ENSIPUG00000004385	arf5 (ENSIPUG00000004215)	Arf5 (ENSIPUG00000004159)	selenot1b (ENSIPUG00000004134)	ENSIPUG00000004126	ppp1r37 (ENSIPUG00000004115)	bmp16 (ENSIPUG00000004106)	gemin7 (ENSIPUG00000004094)
Cyprinoidei	ANCESTRAL SPECIES	244												ENSGT00530000063851.a.b	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00940000159670	ENSGT00940000165467
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	260	ENSGT00530000063702.a.a.b	ENSGT00390000016211.b	ENSGT00940000154380.a.a.a.d	ENSGT01050000244956.a.b.c	ENSGT00390000009899.b.n.h	ENSGT00940000154688.a.b.b.b	ENSGT01080000257495.a.a	ENSGT01010000222360.E.c.n	ENSGT00390000004228.h	ENSGT00390000012630.B.a	ENSGT00390000018488.a	ENSGT00530000063851.a.b.c	ENSGT00940000155083.b.a.a.b	ENSGT00940000155810.g	ENSGT00940000155840.A.h	ENSGT01030000234515.a.b.a.b.b.a ##22	ENSGT00940000165467.d.b	ENSGT00390000002417	ENSGT00940000155394.i.b.o	ENSGT00690000103052.c	ENSGT00390000008749.f.a	ENSGT00940000160687.b	ENSGT00390000005075.o.a	ENSGT00940000156041.d.b.a
Goldfish	MODERN SPECIES	1572														vwf (ENSCARG00000034507)	ENSCARG00000034239	cers3b (ENSCARG00000034211) ##22	glipr1b (ENSCARG00000034187)	ENSCARG00000034177	pdp2 (ENSCARG00000034157)	terb1 (ENSCARG00000034130)	si:dkey-238c7.16 (ENSCARG00000034119)	ENSCARG00000034041	si:dkey-30c15.2 (ENSCARG00000034028)	ARF5 (ENSCARG00000033872)	zgc:77752 (ENSCARG00000033847)	odf3b (ENSCARG00000033831)	trim35-30 (ENSCARG00000033820)	rabl2 (ENSCARG00000033800)	SHANK3 (ENSCARG00000033623)
Cyprininae_a	ANCESTRAL SPECIES	70	ENSGT00530000063702.a.a.b	ENSGT00390000016211.b	ENSGT00940000154380.a.a.a.d	ENSGT01050000244956.a.b.c	ENSGT00390000009899.b.n.h	ENSGT00940000154688.a.b.b.b	ENSGT01080000257495.a.a	ENSGT01010000222360.E.c.n	ENSGT00390000004228.g.a	ENSGT00390000012630.B.a	ENSGT00390000018488.a	ENSGT00530000063851.a.b.c	ENSGT00940000155083.b.a.a.b	ENSGT00940000155810.g	ENSGT00940000155840.A.h	ENSGT01030000234515.a.b.a.b.b.a ##22	ENSGT00940000159670	ENSGT00940000165467.d.b	ENSGT00390000002417	ENSGT00940000155394.i.b.o	ENSGT00690000103052.c	ENSGT00390000008749.f.a	ENSGT00940000160687.b	ENSGT00390000005075.o.a	ENSGT00940000156041.d.b.a	ENSGT00390000005075.p	ENSGT00940000179232.b	ENSGT00940000156041.d.a	ENSGT00660000097187.a	ENSGT00940000156878.i.b.a.a.g	ENSGT00940000165406.a
Common carp reference	MODERN SPECIES	9	c2cd5 (ENSCCRG00000011827)	lmf2a (ENSCCRG00000010088)	ADM2 (ENSCCRG00000011807)	ENSCCRG00000077820	ENSCCRG00000073192	dnaja2b (ENSCCRG00000047332)	ENSCCRG00000056574	calub (ENSCCRG00000009440)	utp15 (ENSCCRG00000009437)	ENSCCRG00000009424	cfap161 (ENSCCRG00000054176)	ENSCCRG00000009411	cd9a (ENSCCRG00000057857)	vwf (ENSCCRG00000018436)	ANO2 (ENSCCRG00000018084)	cers3b (ENSCCRG00000022939) ##22	ENSCCRG00000053425	glipr1b (ENSCCRG00000053844)	ENSCCRG00000002780	ENSCCRG00000022959	si:dkey-30c15.13 (ENSCCRG00000022987)	ENSCCRG00000023016	pdp2 (ENSCCRG00000079261)	terb1 (ENSCCRG00000054326)	ENSCCRG00000039717	si:dkey-238c7.16 (ENSCCRG00000002755)	si:dkey-30c15.2 (ENSCCRG00000060258)	ENSCCRG00000064574	ENSCCRG00000070947	zgc:77752 (ENSCCRG00000076395)	odf3b (ENSCCRG00000003062)
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	3309																cers3b (ENSSGRG00000006396) ##22
Golden-line barbel	MODERN SPECIES	13	wash1 (ENSSGRG00000032875)	ddx11 (ENSSGRG00000032872)	fkbp4 (ENSSGRG00000032797)	c2cd5 (ENSSGRG00000032770)	lmf2a (ENSSGRG00000032745)	miox (ENSSGRG00000032743)	ADM2 (ENSSGRG00000032742)	PPP6R2 (ENSSGRG00000032636)	dnaja2b (ENSSGRG00000032635)	utp15 (ENSSGRG00000032626)	ENSSGRG00000032625	cfap161 (ENSSGRG00000032623)	ENSSGRG00000032622	vwf (ENSSGRG00000032585)	ENSSGRG00000032536	cers3b (ENSSGRG00000032534) ##22	glipr1b (ENSSGRG00000032532)	ENSSGRG00000032531	ENSSGRG00000032530	si:dkey-30c15.13 (ENSSGRG00000032529)	ENSSGRG00000032488	ENSSGRG00000032483	pdp2 (ENSSGRG00000032482)	terb1 (ENSSGRG00000032481)	si:dkey-238c7.16 (ENSSGRG00000032478)	ENSSGRG00000032476	si:dkey-30c15.2 (ENSSGRG00000032475)	ARF5 (ENSSGRG00000032285)	zgc:77752 (ENSSGRG00000032282)	odf3b (ENSSGRG00000032280)	ENSSGRG00000032279
Cyprininae	ANCESTRAL SPECIES	49	ENSGT00940000154380.a.a.a.c	ENSGT01050000244956.a.b.d	ENSGT00390000009899.b.n.g	ENSGT01080000257495.a.b	ENSGT00940000154688.a.b.b.a	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c.m	ENSGT00390000004228.g.b	ENSGT00390000012630.B.b	ENSGT00390000018488.b	ENSGT00530000063851.a.b.d	ENSGT00940000155083.b.a.a.a	ENSGT00940000155810.h	ENSGT00940000155840.A.g	ENSGT01030000234515.a.b.a.b.b.b ##22	ENSGT00940000159670	ENSGT00940000165467.d.a	ENSGT00940000155394.i.b.p	ENSGT00690000103052.d	ENSGT00940000157175	ENSGT00390000008749.f.b	ENSGT00940000160687.a	ENSGT00390000005075.o.b	ENSGT00940000179232.a	ENSGT00940000156041.d.b.b	ENSGT00660000097187.b	ENSGT00940000156878.i.b.a.a.h	ENSGT00940000165406.b	ENSGT00940000161995.p	ENSGT00940000156551.b
Goldfish	MODERN SPECIES	9	miox (ENSCARG00000005236)	ADM2 (ENSCARG00000005253)	ENSCARG00000005257	ENSCARG00000005259	PPP6R2 (ENSCARG00000005273)	dnaja2b (ENSCARG00000005320)	ENSCARG00000005335	ENSCARG00000005339	ENSCARG00000005342	calub (ENSCARG00000005364)	utp15 (ENSCARG00000005380)	ENSCARG00000005395	cfap161 (ENSCARG00000005407)	ENSCARG00000005417	cd9a (ENSCARG00000005444)	cers3b (ENSCARG00000005497) ##22	glipr1b (ENSCARG00000006142)	ENSCARG00000006160	ENSCARG00000006277	si:dkey-30c15.13 (ENSCARG00000006406)	ENSCARG00000006420	ENSCARG00000006481	pdp2 (ENSCARG00000006522)	terb1 (ENSCARG00000006537)	si:dkey-238c7.16 (ENSCARG00000006559)	ENSCARG00000006571	si:dkey-30c15.2 (ENSCARG00000006588)	ARF5 (ENSCARG00000006641)	odf3b (ENSCARG00000006766)	zgc:77752 (ENSCARG00000006780)	trim35-30 (ENSCARG00000006797)
Cyprininae_a	ANCESTRAL SPECIES	25	ENSGT00940000154380.a.a.a.c	ENSGT01050000244956.a.b.d	ENSGT00390000009899.b.n.g	ENSGT01080000257495.a.b	ENSGT00940000154688.a.b.b.a	ENSGT00940000160243	ENSGT00940000165748.b	ENSGT01010000222360.E.c.m	ENSGT00390000004228.g.b	ENSGT00390000012630.B.b	ENSGT00390000018488.b	ENSGT00530000063851.a.b.d	ENSGT00940000155083.b.a.a.a	ENSGT00940000155810.h	ENSGT00940000155840.A.g	ENSGT01030000234515.a.b.a.b.b.b ##22	ENSGT00940000165467.d.a	ENSGT00940000155394.i.b.p	ENSGT00690000103052.d	ENSGT00940000157175	ENSGT00390000008749.f.b	ENSGT00940000160687.a	ENSGT00390000005075.o.b	ENSGT00940000179232.a	ENSGT00940000156041.d.b.b	ENSGT00660000097187.b	ENSGT00940000156878.i.b.a.a.h	ENSGT00940000165406.b	ENSGT00940000161995.p	ENSGT00940000156551.b	ENSGT01030000234583.a.a.c.b.b.c.a.a.b
Common carp reference	MODERN SPECIES	19	ADM2 (ENSCCRG00000010113)	ENSCCRG00000068435	ENSCCRG00000076979	ENSCCRG00000075294	dnaja2b (ENSCCRG00000072143)	ENSCCRG00000010137	ENSCCRG00000021928	calub (ENSCCRG00000063877)	utp15 (ENSCCRG00000010159)	ENSCCRG00000010193	cfap161 (ENSCCRG00000010202)	ENSCCRG00000035545	cd9a (ENSCCRG00000008600)	ENSCCRG00000008597	ANO2 (ENSCCRG00000007033)	cers3b (ENSCCRG00000071444) ##22	ENSCCRG00000022943	glipr1b (ENSCCRG00000022951)	ENSCCRG00000055817	ENSCCRG00000022364	si:dkey-30c15.13 (ENSCCRG00000002789)	ENSCCRG00000022997	ENSCCRG00000067904	pdp2 (ENSCCRG00000002730)	terb1 (ENSCCRG00000082834)	si:dkey-238c7.16 (ENSCCRG00000006673)	ENSCCRG00000056316	si:dkey-30c15.2 (ENSCCRG00000002822)	ENSCCRG00000077590	ENSCCRG00000054415	zgc:77752 (ENSCCRG00000003103)
Golden-line barbel	MODERN SPECIES	21									ENSSGRG00000024094	utp15 (ENSSGRG00000024069)	ENSSGRG00000024068	cfap161 (ENSSGRG00000024064)	ENSSGRG00000024062	cd9a (ENSSGRG00000024032)	ENSSGRG00000023131	cers3b (ENSSGRG00000022868) ##22	glipr1b (ENSSGRG00000022858)	ENSSGRG00000022857	ENSSGRG00000022855	ENSSGRG00000022854	ENSSGRG00000022838	pdp2 (ENSSGRG00000022836)	ENSSGRG00000022834	si:dkey-238c7.16 (ENSSGRG00000022833)	ENSSGRG00000022832	si:dkey-30c15.2 (ENSSGRG00000022831)	ARF5 (ENSSGRG00000022829)	zgc:77752 (ENSSGRG00000022826)	odf3b (ENSSGRG00000022825)	trim35-30 (ENSSGRG00000022824)	rabl2 (ENSSGRG00000022821)
Zebrafish	MODERN SPECIES	9	ENSDARG00000076548	PPP6R2 (ENSDARG00000069654)	dnaja2b (ENSDARG00000010745)	ENSDARG00000112957	ENSDARG00000093117	ENSDARG00000078508	calub (ENSDARG00000005115)	utp15 (ENSDARG00000002720)	ENSDARG00000069504	cfap161 (ENSDARG00000018281)	ENSDARG00000100256	cd9a (ENSDARG00000005842)	vwf (ENSDARG00000077231)	ENSDARG00000112349	ANO2 (ENSDARG00000003210)	cers3b (ENSDARG00000036337) ##22	ENSDARG00000058486	glipr1b (ENSDARG00000030078)	ENSDARG00000058492	bbs10 (ENSDARG00000069515)	ENSDARG00000042350	si:dkey-30c15.13 (ENSDARG00000114258)	ENSDARG00000058546	ENSDARG00000088130	pdp2 (ENSDARG00000058571)	terb1 (ENSDARG00000058587)	si:dkey-238c7.16 (ENSDARG00000069537)	ENSDARG00000063293	si:dkey-30c15.2 (ENSDARG00000069540)	arf5 (ENSDARG00000070472)	ARF5 (ENSDARG00000113899)
Euteleosteomorpha	ANCESTRAL SPECIES	396													ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488
Acanthomorphata	ANCESTRAL SPECIES	4	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00980000203452	ENSGT00730000111392
Euacanthomorphacea	ANCESTRAL SPECIES	7	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000159215	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00980000203452	ENSGT00730000111392
Percomorphaceae	ANCESTRAL SPECIES	4	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000159215	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00980000203452	ENSGT00730000111392
Tiger tail seahorse	MODERN SPECIES	394	c2cd5 (ENSHCOG00000000462)	B4GALNT3 (ENSHCOG00000016546)	ENSHCOG00000016607	fkbp4 (ENSHCOG00000016612)	ddx11 (ENSHCOG00000016657)	wash1 (ENSHCOG00000016683)	ENSHCOG00000016692	ENSHCOG00000016827	ENSHCOG00000016847	OTOGL (ENSHCOG00000016963)	ENSHCOG00000016988	ENSHCOG00000017015	cd9a (ENSHCOG00000017035)	vwf (ENSHCOG00000017149)	ANO2 (ENSHCOG00000017295)	cers3b (ENSHCOG00000017559) ##22	cfap161 (ENSHCOG00000017606)	ENSHCOG00000017697
Percomorphaceae_B	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Ovalentaria	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Atherinomorphae	ANCESTRAL SPECIES	5	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Cyprinodontiformes	ANCESTRAL SPECIES	6	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Aplocheiloidei	ANCESTRAL SPECIES	1	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Mangrove rivulus	MODERN SPECIES	6	lmf2a (ENSKMAG00000014290)	c2cd5 (ENSKMAG00000014328)	B4GALNT3 (ENSKMAG00000014375)	fkbp4 (ENSKMAG00000014406)	ddx11 (ENSKMAG00000014450)	wash1 (ENSKMAG00000014511)	IQSEC3 (ENSKMAG00000014557)	ENSKMAG00000014597	ENSKMAG00000014668	OTOGL (ENSKMAG00000014696)	ENSKMAG00000014791	ENSKMAG00000014828	cd9a (ENSKMAG00000014873)	vwf (ENSKMAG00000014966)	ANO2 (ENSKMAG00000015137)	cers3b (ENSKMAG00000015238) ##22	cfap161 (ENSKMAG00000015273)	ENSKMAG00000015298	igf1ra (ENSKMAG00000015332)	ENSKMAG00000015417	synm (ENSKMAG00000015444)	TTC23 (ENSKMAG00000015468)	mef2aa (ENSKMAG00000015546)	ENSKMAG00000015682	nr2f2 (ENSKMAG00000015717)	lysmd4 (ENSKMAG00000015747)	ENSKMAG00000015760	rgma (ENSKMAG00000015791)	ENSKMAG00000015812	chd2 (ENSKMAG00000015849)	fam174b (ENSKMAG00000015922)
Turquoise killifish	MODERN SPECIES	1622	ENSNFUG00015017574	ADM2 (ENSNFUG00015017569)	ENSNFUG00015017562	MIOX (ENSNFUG00015017546)	lmf2a (ENSNFUG00015017518)	c2cd5 (ENSNFUG00015017391)	ENSNFUG00015017107	fkbp4 (ENSNFUG00015017038)	ddx11 (ENSNFUG00015016881)	wash1 (ENSNFUG00015016837)	IQSEC3 (ENSNFUG00015016781)	ENSNFUG00015016508	ENSNFUG00015016500	cd9a (ENSNFUG00015016483)	ENSNFUG00015012418	CERS3 (ENSNFUG00015012198) ##22	cfap161 (ENSNFUG00015012156)	ENSNFUG00015012150	igf1ra (ENSNFUG00015011508)	ENSNFUG00015011427	SYNM (ENSNFUG00015011418)	TTC23 (ENSNFUG00015011409)	mef2aa (ENSNFUG00015011335)	ENSNFUG00015011279	nr2f2 (ENSNFUG00015011187)	ENSNFUG00015011164	ENSNFUG00015011150	ENSNFUG00015011138	LYSMD4 (ENSNFUG00015011126)	ENSNFUG00015011113	ENSNFUG00015011098
Cyprinodontoidei	ANCESTRAL SPECIES	7	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Poeciliinae	ANCESTRAL SPECIES	3	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Poecilia	ANCESTRAL SPECIES	5	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
NAME_6	ANCESTRAL SPECIES	26	ENSGT00390000016211	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f
Sailfin molly	MODERN SPECIES	792											ENSPLAG00000017833	ENSPLAG00000017824	cd9a (ENSPLAG00000017814)	vwf (ENSPLAG00000017797)	ENSPLAG00000000404	cers3b (ENSPLAG00000017639) ##22	cfap161 (ENSPLAG00000017610)	ENSPLAG00000017589	igf1ra (ENSPLAG00000017556)	PGPEP1L (ENSPLAG00000017521)	synm (ENSPLAG00000017513)	ENSPLAG00000017509
Amazon molly	MODERN SPECIES	265	miox (ENSPFOG00000018753)	lmf2a (ENSPFOG00000018767)	c2cd5 (ENSPFOG00000018794)	B4GALNT3 (ENSPFOG00000018828)	fkbp4 (ENSPFOG00000018881)	ddx11 (ENSPFOG00000018929)	wash1 (ENSPFOG00000018970)	IQSEC3 (ENSPFOG00000018979)	ENSPFOG00000019026	OTOGL (ENSPFOG00000019067)	ENSPFOG00000019093	ENSPFOG00000019097	cd9a (ENSPFOG00000019107)	vwf (ENSPFOG00000019119)	ANO2 (ENSPFOG00000019147)	cers3b (ENSPFOG00000019166) ##22	ENSPFOG00000022648	ENSPFOG00000019170	igf1ra (ENSPFOG00000019184)	PGPEP1L (ENSPFOG00000024508)	synm (ENSPFOG00000019198)	TTC23 (ENSPFOG00000019200)	mef2aa (ENSPFOG00000019202)	ENSPFOG00000019209
Guppy	MODERN SPECIES	458	c2cd5 (ENSPREG00000005347)	B4GALNT3 (ENSPREG00000005558)	fkbp4 (ENSPREG00000005588)	ddx11 (ENSPREG00000005612)	wash1 (ENSPREG00000005633)	ENSPREG00000005664	ENSPREG00000005685	ENSPREG00000005724	OTOGL (ENSPREG00000005746)	ENSPREG00000005894	ENSPREG00000005922	cd9a (ENSPREG00000005943)	ENSPREG00000006037	ENSPREG00000006054	ANO2 (ENSPREG00000006076)	cers3b (ENSPREG00000006120) ##22	ENSPREG00000006131	ENSPREG00000006156	igf1ra (ENSPREG00000006183)	PGPEP1L (ENSPREG00000006211)	synm (ENSPREG00000006229)	TTC23 (ENSPREG00000006235)	mef2aa (ENSPREG00000006266)	ENSPREG00000006337	nr2f2 (ENSPREG00000006395)	lysmd4 (ENSPREG00000006409)	rgma (ENSPREG00000006414)	ENSPREG00000006419	ENSPREG00000006431	ENSPREG00000006449	ENSPREG00000006495
Platyfish	MODERN SPECIES	11	miox (ENSXMAG00000004061)	lmf2a (ENSXMAG00000004047)	c2cd5 (ENSXMAG00000004004)	ENSXMAG00000003989	fkbp4 (ENSXMAG00000003963)	ddx11 (ENSXMAG00000003929)	wash1 (ENSXMAG00000003916)	IQSEC3 (ENSXMAG00000003890)	ENSXMAG00000003867	ENSXMAG00000030010	ENSXMAG00000003808	ENSXMAG00000028027	cd9a (ENSXMAG00000003798)	vwf (ENSXMAG00000003784)	ANO2 (ENSXMAG00000003764)	cers3b (ENSXMAG00000023244) ##22	cfap161 (ENSXMAG00000003746)	ENSXMAG00000017827	igf1ra (ENSXMAG00000003717)	ENSXMAG00000025552	synm (ENSXMAG00000003710)	TTC23 (ENSXMAG00000003704)	mef2aa (ENSXMAG00000029609)	ENSXMAG00000009271	nr2f2 (ENSXMAG00000014103)	lysmd4 (ENSXMAG00000002703)	rgma (ENSXMAG00000002704)	ENSXMAG00000021398	chd2 (ENSXMAG00000002707)	fam174b (ENSXMAG00000002779)	st8sia2 (ENSXMAG00000002780)
NAME_4	ANCESTRAL SPECIES	39	ENSGT00390000016211	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f.h	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Sheepshead minnow	MODERN SPECIES	1347											ENSCVAG00000011240	ENSCVAG00000011268	cd9a (ENSCVAG00000011284)	vwf (ENSCVAG00000011447)	ANO2 (ENSCVAG00000011619)	cers3b (ENSCVAG00000011626) ##22	cfap161 (ENSCVAG00000011681)	ENSCVAG00000011696	ENSCVAG00000011705
Mummichog	MODERN SPECIES	2320	ENSFHEG00000003830	c2cd5 (ENSFHEG00000003861)	fkbp4 (ENSFHEG00000003887)	ddx11 (ENSFHEG00000003962)	wash1 (ENSFHEG00000003974)	ENSFHEG00000003986	ENSFHEG00000004061	ENSFHEG00000004073	ENSFHEG00000004083	ENSFHEG00000004090	ENSFHEG00000004113	cd9a (ENSFHEG00000004144)	vwf (ENSFHEG00000004280)	ENSFHEG00000004320	ANO2 (ENSFHEG00000004340)	cers3b (ENSFHEG00000004377) ##22	cfap161 (ENSFHEG00000004419)	ENSFHEG00000004438	igf1ra (ENSFHEG00000004520)	PGPEP1L (ENSFHEG00000004545)	synm (ENSFHEG00000004554)	mef2aa (ENSFHEG00000004666)	ENSFHEG00000004682	ENSFHEG00000004731	nr2f2 (ENSFHEG00000004747)	lysmd4 (ENSFHEG00000004756)
Oryzias	ANCESTRAL SPECIES	16	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Oryzias_b	ANCESTRAL SPECIES		ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Javanese ricefish	MODERN SPECIES	20	ENSOJAG00000023036	ENSOJAG00000023034	miox (ENSOJAG00000023028)	c2cd5 (ENSOJAG00000022965)	B4GALNT3 (ENSOJAG00000022947)	fkbp4 (ENSOJAG00000022756)	ddx11 (ENSOJAG00000022702)	wash1 (ENSOJAG00000022682)	ENSOJAG00000022677	ENSOJAG00000022669	ENSOJAG00000022582	ENSOJAG00000022464	ENSOJAG00000022461	cd9a (ENSOJAG00000022455)	ENSOJAG00000020306	cers3b (ENSOJAG00000020223) ##22	cfap161 (ENSOJAG00000020202)	ENSOJAG00000020194	igf1ra (ENSOJAG00000018672)	ENSOJAG00000018615	synm (ENSOJAG00000018610)	mef2aa (ENSOJAG00000018536)	nr2f2 (ENSOJAG00000018316)	lysmd4 (ENSOJAG00000018302)	ENSOJAG00000018293	rgma (ENSOJAG00000018284)	chd2 (ENSOJAG00000017547)	fam174b (ENSOJAG00000017497)	st8sia2 (ENSOJAG00000017474)	slco3a1a (ENSOJAG00000017456)	si:dkeyp-59c12.1 (ENSOJAG00000017451)
Indian medaka	MODERN SPECIES	15	wash1 (ENSOMEG00000006586)	IQSEC3 (ENSOMEG00000006565)	ENSOMEG00000006529	ENSOMEG00000006517	ENSOMEG00000006505	OTOGL (ENSOMEG00000006482)	ENSOMEG00000006338	ENSOMEG00000006293	cd9a (ENSOMEG00000006285)	ENSOMEG00000006259	ENSOMEG00000006233	ENSOMEG00000006217	ENSOMEG00000006199	ENSOMEG00000006188	ENSOMEG00000006175	cers3b (ENSOMEG00000006160) ##22	cfap161 (ENSOMEG00000006124)	ENSOMEG00000006108	igf1ra (ENSOMEG00000006084)	ENSOMEG00000006018	synm (ENSOMEG00000006009)	mef2aa (ENSOMEG00000005995)	ENSOMEG00000005933	nr2f2 (ENSOMEG00000005896)	lysmd4 (ENSOMEG00000005874)	rgma (ENSOMEG00000005850)	ENSOMEG00000005842	chd2 (ENSOMEG00000005831)	fam174b (ENSOMEG00000005774)	st8sia2 (ENSOMEG00000005755)	slco3a1a (ENSOMEG00000005704)
Oryzias_a	ANCESTRAL SPECIES	1	ENSGT00390000016211	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m	ENSGT00940000164158.B
Japanese Medaka HdrR	MODERN SPECIES	20	c2cd5 (ENSORLG00000009069)	ENSORLG00000009004	fkbp4 (ENSORLG00000008977)	ddx11 (ENSORLG00000008936)	wash1 (ENSORLG00000008908)	ENSORLG00000008881	ENSORLG00000008853	ENSORLG00000022622	ENSORLG00000026155	ENSORLG00000008768	ENSORLG00000030069	cd9a (ENSORLG00000008738)	vwf (ENSORLG00000008677)	ENSORLG00000027716	ENSORLG00000008575	cers3b (ENSORLG00000023203) ##22	cfap161 (ENSORLG00000008557)	ENSORLG00000008549	igf1ra (ENSORLG00000008532)	ENSORLG00000024147	synm (ENSORLG00000008497)	mef2aa (ENSORLG00000008489)	ENSORLG00000008458	nr2f2 (ENSORLG00000008429)	lysmd4 (ENSORLG00000022726)	rgma (ENSORLG00000008413)	chd2 (ENSORLG00000008403)	fam174b (ENSORLG00000029263)	st8sia2 (ENSORLG00000008368)	slco3a1a (ENSORLG00000008355)	si:dkeyp-59c12.1 (ENSORLG00000008337)
Chinese medaka	MODERN SPECIES	766	ADM2 (ENSOSIG00000013026)	miox (ENSOSIG00000013028)	lmf2a (ENSOSIG00000013031)	c2cd5 (ENSOSIG00000013049)	ENSOSIG00000013068	fkbp4 (ENSOSIG00000013149)	ddx11 (ENSOSIG00000013493)	wash1 (ENSOSIG00000013957)	ENSOSIG00000013960	ENSOSIG00000013964	ENSOSIG00000013977	ENSOSIG00000013980	ENSOSIG00000014000	cd9a (ENSOSIG00000014001)	ENSOSIG00000014386	cers3b (ENSOSIG00000016891) ##22	cfap161 (ENSOSIG00000016893)	ENSOSIG00000016898	igf1ra (ENSOSIG00000017019)	ENSOSIG00000020627	mef2aa (ENSOSIG00000020640)	ENSOSIG00000020669	nr2f2 (ENSOSIG00000020674)	lysmd4 (ENSOSIG00000020686)	rgma (ENSOSIG00000000692)	fam174b (ENSOSIG00000002991)	st8sia2 (ENSOSIG00000002999)	slco3a1a (ENSOSIG00000003005)	si:dkeyp-59c12.1 (ENSOSIG00000003011)	gnrhr4 (ENSOSIG00000003019)	pex11a (ENSOSIG00000003040)
Ovalentaria_B	ANCESTRAL SPECIES	3	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Cichlidae	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Pseudocrenilabrinae	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m	ENSGT00940000164158.B
Pseudocrenilabrinae_A	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m	ENSGT00940000164158.B
Haplochromini	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT01100000263664.b.a	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Burton s mouthbrooder	MODERN SPECIES	421	lmf2a (ENSHBUG00000016018)	c2cd5 (ENSHBUG00000016111)	tnni1c (ENSHBUG00000016236)	B4GALNT3 (ENSHBUG00000016333)	fkbp4 (ENSHBUG00000016387)	ddx11 (ENSHBUG00000016478)	wash1 (ENSHBUG00000000885)	ENSHBUG00000000485	ENSHBUG00000016994	OTOGL (ENSHBUG00000017181)	ENSHBUG00000017194	ENSHBUG00000017209	cd9a (ENSHBUG00000017214)	vwf (ENSHBUG00000017350)	ANO2 (ENSHBUG00000017414)	cers3b (ENSHBUG00000017453) ##22	cfap161 (ENSHBUG00000017492)	igf1ra (ENSHBUG00000017562)	ENSHBUG00000017575	synm (ENSHBUG00000017588)	mef2aa (ENSHBUG00000017680)	ENSHBUG00000017717	nr2f2 (ENSHBUG00000017737)	ENSHBUG00000017755	lysmd4 (ENSHBUG00000017760)	rgma (ENSHBUG00000017776)	chd2 (ENSHBUG00000017947)	fam174b (ENSHBUG00000000528)	st8sia2 (ENSHBUG00000018106)	slco3a1a (ENSHBUG00000018164)	si:dkeyp-59c12.1 (ENSHBUG00000018174)
Haplochromini_A	ANCESTRAL SPECIES	1	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT01100000263664.b.a	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
P. nyererei	MODERN SPECIES	330	miox (ENSPNYG00000008102)	lmf2a (ENSPNYG00000008138)	c2cd5 (ENSPNYG00000008167)	B4GALNT3 (ENSPNYG00000008237)	fkbp4 (ENSPNYG00000008286)	ddx11 (ENSPNYG00000008436)	wash1 (ENSPNYG00000008862)	ENSPNYG00000008918	ENSPNYG00000009024	OTOGL (ENSPNYG00000009050)	ENSPNYG00000009208	ENSPNYG00000009233	cd9a (ENSPNYG00000009249)	vwf (ENSPNYG00000009311)	ANO2 (ENSPNYG00000009646)	cers3b (ENSPNYG00000009746) ##22	cfap161 (ENSPNYG00000009833)	igf1ra (ENSPNYG00000009876)	PGPEP1L (ENSPNYG00000009943)	synm (ENSPNYG00000009951)	mef2aa (ENSPNYG00000009994)	ENSPNYG00000010077	nr2f2 (ENSPNYG00000010176)	ENSPNYG00000010203	lysmd4 (ENSPNYG00000010220)	rgma (ENSPNYG00000010229)	ENSPNYG00000010253	chd2 (ENSPNYG00000010273)	fam174b (ENSPNYG00000010335)	st8sia2 (ENSPNYG00000010345)	slco3a1a (ENSPNYG00000010413)
Haplochromini_B	ANCESTRAL SPECIES	28	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT01100000263664.b.a	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Zebra mbuna	MODERN SPECIES	1110	tnni1c (ENSMZEG00005020074)	B4GALNT3 (ENSMZEG00005020081)	fkbp4 (ENSMZEG00005020093)	ddx11 (ENSMZEG00005020109)	wash1 (ENSMZEG00005020132)	ENSMZEG00005020140	ENSMZEG00005020145	ENSMZEG00005020146	ENSMZEG00005020153	OTOGL (ENSMZEG00005020165)	ENSMZEG00005020187	ENSMZEG00005020195	cd9a (ENSMZEG00005020211)	vwf (ENSMZEG00005021239)	ANO2 (ENSMZEG00005021258)	cers3b (ENSMZEG00005021267) ##22	cfap161 (ENSMZEG00005021271)	igf1ra (ENSMZEG00005021278)	ENSMZEG00005021285	synm (ENSMZEG00005021288)	mef2aa (ENSMZEG00005021299)	ENSMZEG00005021310	nr2f2 (ENSMZEG00005021316)	ENSMZEG00005021320	lysmd4 (ENSMZEG00005021324)	rgma (ENSMZEG00005021329)	chd2 (ENSMZEG00005021333)	fam174b (ENSMZEG00005021342)	st8sia2 (ENSMZEG00005021348)	slco3a1a (ENSMZEG00005021357)	si:dkeyp-59c12.1 (ENSMZEG00005021361)
Eastern happy	MODERN SPECIES	19	c2cd5 (ENSACLG00000023330)	tnni1c (ENSACLG00000023266)	B4GALNT3 (ENSACLG00000023227)	fkbp4 (ENSACLG00000023200)	ddx11 (ENSACLG00000023040)	wash1 (ENSACLG00000023001)	IQSEC3 (ENSACLG00000022970)	ENSACLG00000022673	ENSACLG00000022620	OTOGL (ENSACLG00000022514)	ENSACLG00000022382	ENSACLG00000022366	cd9a (ENSACLG00000022342)	vwf (ENSACLG00000022187)	ANO2 (ENSACLG00000022109)	cers3b (ENSACLG00000022045) ##22	cfap161 (ENSACLG00000022028)	igf1ra (ENSACLG00000021919)	ENSACLG00000021901	synm (ENSACLG00000021881)	ENSACLG00000021871	mef2aa (ENSACLG00000021682)	ENSACLG00000021565	nr2f2 (ENSACLG00000021486)	ENSACLG00000021472	lysmd4 (ENSACLG00000021463)	rgma (ENSACLG00000021451)	ENSACLG00000021440	chd2 (ENSACLG00000021370)	fam174b (ENSACLG00000021357)	st8sia2 (ENSACLG00000021303)
Lyretail cichlid	MODERN SPECIES	305	tnni1c (ENSNBRG00000022064)	B4GALNT3 (ENSNBRG00000021981)	fkbp4 (ENSNBRG00000021937)	ddx11 (ENSNBRG00000021884)	wash1 (ENSNBRG00000021855)	ENSNBRG00000021848	ENSNBRG00000021637	ENSNBRG00000021593	OTOGL (ENSNBRG00000021488)	ENSNBRG00000021455	ENSNBRG00000021441	ENSNBRG00000021388	cd9a (ENSNBRG00000021366)	vwf (ENSNBRG00000021266)	ANO2 (ENSNBRG00000021153)	cers3b (ENSNBRG00000021110) ##22	cfap161 (ENSNBRG00000021088)	igf1ra (ENSNBRG00000021047)	PGPEP1L (ENSNBRG00000021032)	synm (ENSNBRG00000021019)	mef2aa (ENSNBRG00000020999)	ENSNBRG00000020791	nr2f2 (ENSNBRG00000020733)	ENSNBRG00000020713	lysmd4 (ENSNBRG00000020700)	ENSNBRG00000020688	rgma (ENSNBRG00000020662)	chd2 (ENSNBRG00000020591)	fam174b (ENSNBRG00000020584)	st8sia2 (ENSNBRG00000020566)	slco3a1a (ENSNBRG00000020539)
Nile tilapia	MODERN SPECIES	19	miox (ENSONIG00000015023)	lmf2a (ENSONIG00000015028)	c2cd5 (ENSONIG00000015029)	tnni1c (ENSONIG00000015040)	B4GALNT3 (ENSONIG00000015046)	fkbp4 (ENSONIG00000015051)	ddx11 (ENSONIG00000015055)	wash1 (ENSONIG00000015061)	ENSONIG00000015064	ENSONIG00000015067	ENSONIG00000015085	ENSONIG00000015088	cd9a (ENSONIG00000030196)	vwf (ENSONIG00000015097)	ANO2 (ENSONIG00000015108)	cers3b (ENSONIG00000015112) ##22	cfap161 (ENSONIG00000039493)	igf1ra (ENSONIG00000015115)	synm (ENSONIG00000015124)	ENSONIG00000015122	mef2aa (ENSONIG00000015126)	ENSONIG00000015130	nr2f2 (ENSONIG00000015133)	lysmd4 (ENSONIG00000015134)	rgma (ENSONIG00000033013)	chd2 (ENSONIG00000015136)	fam174b (ENSONIG00000015144)	st8sia2 (ENSONIG00000015145)	slco3a1a (ENSONIG00000015148)	si:dkeyp-59c12.1 (ENSONIG00000033192)	gnrhr4 (ENSONIG00000015155)
Midas cichlid	MODERN SPECIES	385	c2cd5 (ENSACIG00000022688)	tnni1c (ENSACIG00000022717)	B4GALNT3 (ENSACIG00000022768)	fkbp4 (ENSACIG00000022780)	ddx11 (ENSACIG00000022787)	wash1 (ENSACIG00000022808)	IQSEC3 (ENSACIG00000022824)	ENSACIG00000022866	ENSACIG00000022899	OTOGL (ENSACIG00000022912)	ENSACIG00000022976	ENSACIG00000023003	cd9a (ENSACIG00000023059)	vwf (ENSACIG00000023236)	ANO2 (ENSACIG00000023359)	cers3b (ENSACIG00000023372) ##22	cfap161 (ENSACIG00000023454)	igf1ra (ENSACIG00000023462)	PGPEP1L (ENSACIG00000023469)	ENSACIG00000023484	ENSACIG00000023488	mef2aa (ENSACIG00000023491)	ENSACIG00000023507	nr2f2 (ENSACIG00000023557)	lysmd4 (ENSACIG00000023559)	rgma (ENSACIG00000023566)	ENSACIG00000023571	chd2 (ENSACIG00000023575)	fam174b (ENSACIG00000023583)	st8sia2 (ENSACIG00000023584)	slco3a1a (ENSACIG00000023585)
Pomacentridae	ANCESTRAL SPECIES	1	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Pomacentridae_A	ANCESTRAL SPECIES	9	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Amphiprion	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT01100000264136	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Orange clownfish	MODERN SPECIES	18	c2cd5 (ENSAPEG00000014237)	tnni1c (ENSAPEG00000014478)	B4GALNT3 (ENSAPEG00000014508)	fkbp4 (ENSAPEG00000014582)	ddx11 (ENSAPEG00000014634)	wash1 (ENSAPEG00000014721)	IQSEC3 (ENSAPEG00000014760)	ENSAPEG00000014835	ENSAPEG00000014972	OTOGL (ENSAPEG00000015020)	ENSAPEG00000015327	ENSAPEG00000015374	cd9a (ENSAPEG00000015396)	vwf (ENSAPEG00000015482)	ENSAPEG00000015657	cers3b (ENSAPEG00000015701) ##22	cfap161 (ENSAPEG00000015750)	ENSAPEG00000015782	igf1ra (ENSAPEG00000015850)	PGPEP1L (ENSAPEG00000015958)	synm (ENSAPEG00000015974)	mef2aa (ENSAPEG00000016007)	ENSAPEG00000016136	nr2f2 (ENSAPEG00000016561)	lysmd4 (ENSAPEG00000016599)	rgma (ENSAPEG00000016612)	ENSAPEG00000016637	chd2 (ENSAPEG00000016676)	fam174b (ENSAPEG00000016869)	st8sia2 (ENSAPEG00000016880)	slco3a1a (ENSAPEG00000016887)
Clown anemonefish	MODERN SPECIES	1277	c2cd5 (ENSAOCG00000000527)	tnni1c (ENSAOCG00000008854)	B4GALNT3 (ENSAOCG00000000524)	fkbp4 (ENSAOCG00000008819)	ddx11 (ENSAOCG00000008779)	wash1 (ENSAOCG00000008685)	IQSEC3 (ENSAOCG00000008658)	ENSAOCG00000008601	ENSAOCG00000008511	OTOGL (ENSAOCG00000008472)	ENSAOCG00000008218	ENSAOCG00000008186	cd9a (ENSAOCG00000008161)	vwf (ENSAOCG00000008133)	ANO2 (ENSAOCG00000007980)	cers3b (ENSAOCG00000007896) ##22	cfap161 (ENSAOCG00000007859)	ENSAOCG00000007843	igf1ra (ENSAOCG00000000439)	ENSAOCG00000007743
Spiny chromis	MODERN SPECIES	1087												ENSAPOG00000022924	cd9a (ENSAPOG00000022951)	vwf (ENSAPOG00000023129)	ANO2 (ENSAPOG00000023287)	cers3b (ENSAPOG00000023368) ##22	cfap161 (ENSAPOG00000023404)	ENSAPOG00000023439	igf1ra (ENSAPOG00000023492)	PGPEP1L (ENSAPOG00000023518)	synm (ENSAPOG00000023531)	TTC23 (ENSAPOG00000023566)
Bicolor damselfish	MODERN SPECIES	551		tspan11 (ENSSPAG00000011336)	sema3aa (ENSSPAG00000011388)	ENSSPAG00000011495	ENSSPAG00000011510	IQSEC3 (ENSSPAG00000011550)	ENSSPAG00000011585	ENSSPAG00000011677	ENSSPAG00000011693	ENSSPAG00000011703	ENSSPAG00000011743	cd9a (ENSSPAG00000011773)	vwf (ENSSPAG00000011831)	ENSSPAG00000011928	ANO2 (ENSSPAG00000011952)	cers3b (ENSSPAG00000011979) ##22	cfap161 (ENSSPAG00000012002)	ENSSPAG00000012020	igf1ra (ENSSPAG00000012068)
Percomorphaceae_C	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Eupercaria	ANCESTRAL SPECIES	6	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000159215	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Tetraodontidae	ANCESTRAL SPECIES	11	ENSGT00940000154380.a.a.a	ENSGT00390000016211	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000177018	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00940000174630	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a.f	ENSGT01080000257410.A.f.m
Tetraodon	MODERN SPECIES	4	ADM2 (ENSTNIG00000000994)	miox (ENSTNIG00000019212)	lmf2a (ENSTNIG00000019213)	c2cd5 (ENSTNIG00000019214)	B4GALNT3 (ENSTNIG00000019215)	ddx11 (ENSTNIG00000019216)	IQSEC3 (ENSTNIG00000019218)	wash1 (ENSTNIG00000019217)	ENSTNIG00000019219	OTOGL (ENSTNIG00000019220)	ENSTNIG00000019221	ENSTNIG00000019222	cd9a (ENSTNIG00000019223)	vwf (ENSTNIG00000019224)	ANO2 (ENSTNIG00000019225)	cers3b (ENSTNIG00000019226) ##22	cfap161 (ENSTNIG00000001175)	igf1ra (ENSTNIG00000019227)	synm (ENSTNIG00000019228)	TTC23 (ENSTNIG00000019229)	ENSTNIG00000019230	mef2aa (ENSTNIG00000019231)	ENSTNIG00000019232	nr2f2 (ENSTNIG00000001348)	nr2f2 (ENSTNIG00000000166)	ENSTNIG00000019233	si:dkeyp-59c12.1 (ENSTNIG00000019234)	ENSTNIG00000019235	pex11a (ENSTNIG00000019236)	ENSTNIG00000019237	ENSTNIG00000001294
Fugu	MODERN SPECIES	21	ENSTRUG00000001386	ENSTRUG00000025844	ENSTRUG00000022567	ENSTRUG00000026285	ENSTRUG00000026153	ENSTRUG00000032569	ENSTRUG00000022761	ENSTRUG00000020963	ENSTRUG00000027317	ENSTRUG00000002596	ENSTRUG00000029195	ENSTRUG00000001743	cd9a (ENSTRUG00000022907)	vwf (ENSTRUG00000001878)	ANO2 (ENSTRUG00000032457)	cers3b (ENSTRUG00000004671) ##22	cfap161 (ENSTRUG00000025024)	igf1ra (ENSTRUG00000005173)	ENSTRUG00000022306	synm (ENSTRUG00000006904)	TTC23 (ENSTRUG00000023832)	ENSTRUG00000030755	mef2aa (ENSTRUG00000020953)	ENSTRUG00000007374	nr2f2 (ENSTRUG00000007742)	lysmd4 (ENSTRUG00000022031)	ENSTRUG00000009310	rgma (ENSTRUG00000029874)	chd2 (ENSTRUG00000008842)	fam174b (ENSTRUG00000026433)	st8sia2 (ENSTRUG00000025194)
Eupecaria_A	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Ballan wrasse	MODERN SPECIES	201								zgc:77752 (ENSLBEG00000012294)	ENSLBEG00000012259	ENSLBEG00000012217	ENSLBEG00000012167	ENSLBEG00000012145	cd9a (ENSLBEG00000012112)	vwf (ENSLBEG00000011959)	ANO2 (ENSLBEG00000011858)	cers3b (ENSLBEG00000011788) ##22	cfap161 (ENSLBEG00000011744)	ENSLBEG00000011715	igf1ra (ENSLBEG00000011631)	ENSLBEG00000011580	ENSLBEG00000011547	ENSLBEG00000011539	TTC23 (ENSLBEG00000011517)	mef2aa (ENSLBEG00000011480)	ENSLBEG00000011425	nr2f2 (ENSLBEG00000011395)	lysmd4 (ENSLBEG00000011375)	rgma (ENSLBEG00000011359)	ENSLBEG00000011335	chd2 (ENSLBEG00000011240)	fam174b (ENSLBEG00000011204)
Eupecaria_B	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Eupecaria_C	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Gilthead seabream	MODERN SPECIES	22	ADM2 (ENSSAUG00010011965)	miox (ENSSAUG00010011968)	lmf2a (ENSSAUG00010011992)	c2cd5 (ENSSAUG00010012055)	tnni1c (ENSSAUG00010012082)	ENSSAUG00010012088	ENSSAUG00010012105	fkbp4 (ENSSAUG00010012114)	ddx11 (ENSSAUG00010012369)	wash1 (ENSSAUG00010012417)	IQSEC3 (ENSSAUG00010012426)	ENSSAUG00010012460	ENSSAUG00010012478	cd9a (ENSSAUG00010012481)	ENSSAUG00010012574	cers3b (ENSSAUG00010012747) ##22	cfap161 (ENSSAUG00010012756)	ENSSAUG00010012760	igf1ra (ENSSAUG00010012810)	PGPEP1L (ENSSAUG00010017586)	synm (ENSSAUG00010017588)	TTC23 (ENSSAUG00010017590)	mef2aa (ENSSAUG00010017596)	ENSSAUG00010017611	nr2f2 (ENSSAUG00010017619)	lysmd4 (ENSSAUG00010017679)	rgma (ENSSAUG00010017683)	ENSSAUG00010017686	chd2 (ENSSAUG00010017697)	fam174b (ENSSAUG00010019437)	st8sia2 (ENSSAUG00010019441)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	4	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
European seabass	MODERN SPECIES	19	c2cd5 (ENSDLAG00005024401)	tnni1c (ENSDLAG00005024465)	ENSDLAG00005024478	fkbp4 (ENSDLAG00005024486)	ddx11 (ENSDLAG00005024505)	wash1 (ENSDLAG00005024645)	ENSDLAG00005024652	ENSDLAG00005024666	ENSDLAG00005001567	ENSDLAG00005001599	ENSDLAG00005001764	ENSDLAG00005001752	cd9a (ENSDLAG00005027910)	vwf (ENSDLAG00005001829)	ANO2 (ENSDLAG00005002272)	cers3b (ENSDLAG00005002321) ##22	ENSDLAG00005002388	ENSDLAG00005002409	igf1ra (ENSDLAG00005002853)	PGPEP1L (ENSDLAG00005005911)	ENSDLAG00005005925	TTC23 (ENSDLAG00005029088)	mef2aa (ENSDLAG00005005967)	ENSDLAG00005006109	nr2f2 (ENSDLAG00005006290)	lysmd4 (ENSDLAG00005006413)	rgma (ENSDLAG00005034032)	ENSDLAG00005006435	chd2 (ENSDLAG00005006606)	fam174b (ENSDLAG00005032009)	st8sia2 (ENSDLAG00005010256)
Large yellow croaker	MODERN SPECIES	492	lmf2a (ENSLCRG00005023649)	c2cd5 (ENSLCRG00005023646)	B4GALNT3 (ENSLCRG00005023642)	fkbp4 (ENSLCRG00005023635)	ddx11 (ENSLCRG00005023551)	wash1 (ENSLCRG00005023541)	ENSLCRG00005023536	ENSLCRG00005023534	ENSLCRG00005023530	ENSLCRG00005023524	ENSLCRG00005023522	cd9a (ENSLCRG00005023520)	vwf (ENSLCRG00005023472)	ENSLCRG00005023468	ENSLCRG00005023466	cers3b (ENSLCRG00005023459) ##22	cfap161 (ENSLCRG00005023454)	ENSLCRG00005023452	igf1ra (ENSLCRG00005022856)	PGPEP1L (ENSLCRG00005022841)	synm (ENSLCRG00005022839)	TTC23 (ENSLCRG00005022837)	mef2aa (ENSLCRG00005022836)	ENSLCRG00005022834	nr2f2 (ENSLCRG00005022833)	lysmd4 (ENSLCRG00005022831)	ENSLCRG00005022829	rgma (ENSLCRG00005022828)	chd2 (ENSLCRG00005021750)	fam174b (ENSLCRG00005021722)	st8sia2 (ENSLCRG00005021721)
Perciformes	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Perciformes_a	ANCESTRAL SPECIES	7	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Pike perch	MODERN SPECIES	98	tnni1c (ENSSLUG00000002115)	fkbp4 (ENSSLUG00000002082)	ddx11 (ENSSLUG00000001884)	wash1 (ENSSLUG00000001782)	ENSSLUG00000001772	ENSSLUG00000001739	ENSSLUG00000001712	OTOGL (ENSSLUG00000001616)	ENSSLUG00000001530	ENSSLUG00000001523	ENSSLUG00000001512	cd9a (ENSSLUG00000024978)	vwf (ENSSLUG00000024816)	ENSSLUG00000024775	ENSSLUG00000024772	cers3b (ENSSLUG00000024770) ##22	cfap161 (ENSSLUG00000024767)	igf1ra (ENSSLUG00000023057)	ENSSLUG00000022786	synm (ENSSLUG00000022781)	TTC23 (ENSSLUG00000022777)	ENSSLUG00000022775	mef2aa (ENSSLUG00000022760)	ENSSLUG00000022578
Channel bull blenny	MODERN SPECIES	20	tnni1c (ENSCGOG00000002243)	B4GALNT3 (ENSCGOG00000002269)	fkbp4 (ENSCGOG00000002296)	ddx11 (ENSCGOG00000002638)	wash1 (ENSCGOG00000003469)	IQSEC3 (ENSCGOG00000003503)	ENSCGOG00000003547	OTOGL (ENSCGOG00000003551)	ENSCGOG00000003567	ENSCGOG00000003569	ENSCGOG00000003570	cd9a (ENSCGOG00000003575)	vwf (ENSCGOG00000003599)	ENSCGOG00000004600	ENSCGOG00000004606	cers3b (ENSCGOG00000004620) ##22	cfap161 (ENSCGOG00000004638)	ENSCGOG00000004682	igf1ra (ENSCGOG00000004785)	ENSCGOG00000009411	ENSCGOG00000009416	TTC23 (ENSCGOG00000009420)	mef2aa (ENSCGOG00000009429)	ENSCGOG00000009520	nr2f2 (ENSCGOG00000009537)	lysmd4 (ENSCGOG00000009587)	rgma (ENSCGOG00000009589)	chd2 (ENSCGOG00000009639)	fam174b (ENSCGOG00000011366)	st8sia2 (ENSCGOG00000011367)	slco3a1a (ENSCGOG00000011372)
Cottioidei	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000177018	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Stickleback	MODERN SPECIES	14	c2cd5 (ENSGACG00000012946)	tnni1c (ENSGACG00000012962)	B4GALNT3 (ENSGACG00000012971)	fkbp4 (ENSGACG00000012979)	ddx11 (ENSGACG00000013030)	wash1 (ENSGACG00000013049)	IQSEC3 (ENSGACG00000013060)	ENSGACG00000013064	OTOGL (ENSGACG00000013089)	ENSGACG00000013107	ENSGACG00000013113	ENSGACG00000013120	cd9a (ENSGACG00000013122)	vwf (ENSGACG00000013135)	ANO2 (ENSGACG00000013149)	cers3b (ENSGACG00000013162) ##22	cfap161 (ENSGACG00000013167)	igf1ra (ENSGACG00000013170)	ENSGACG00000013175	ENSGACG00000013177	mef2aa (ENSGACG00000013182)	ENSGACG00000013219	nr2f2 (ENSGACG00000013235)	lysmd4 (ENSGACG00000013238)	rgma (ENSGACG00000013241)	chd2 (ENSGACG00000013246)	fam174b (ENSGACG00000013258)	tbxas1 (ENSGACG00000013260)	parp12a (ENSGACG00000013321)	ENSGACG00000013331	SRGAP1 (ENSGACG00000013333)
Percomorphaceae_D	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Carangaria	ANCESTRAL SPECIES	6	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200.u.a	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Pleuronectoidei	ANCESTRAL SPECIES		ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200.u.a	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m	ENSGT00940000164158.B
Turbot	MODERN SPECIES	1	lmf2a (ENSSMAG00000003088)	c2cd5 (ENSSMAG00000002930)	tnni1c (ENSSMAG00000002906)	ENSSMAG00000002877	fkbp4 (ENSSMAG00000002822)	ddx11 (ENSSMAG00000002771)	wash1 (ENSSMAG00000002713)	ENSSMAG00000002634	ENSSMAG00000002530	ENSSMAG00000002436	ENSSMAG00000002411	ENSSMAG00000002393	cd9a (ENSSMAG00000002351)	vwf (ENSSMAG00000002256)	ANO2 (ENSSMAG00000002206)	cers3b (ENSSMAG00000002185) ##22	ENSSMAG00000002161	ENSSMAG00000002147	igf1ra (ENSSMAG00000002101)	ENSSMAG00000002044	synm (ENSSMAG00000002028)	mef2aa (ENSSMAG00000001961)	ENSSMAG00000001909	ENSSMAG00000024931	nr2f2 (ENSSMAG00000001895)	lysmd4 (ENSSMAG00000001890)	rgma (ENSSMAG00000001869)	chd2 (ENSSMAG00000001726)	fam174b (ENSSMAG00000034579)	st8sia2 (ENSSMAG00000001692)	slco3a1a (ENSSMAG00000001670)
Carangaria_A	ANCESTRAL SPECIES		ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200.u.a	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Seriola	ANCESTRAL SPECIES	5	ENSGT00390000000212	ENSGT01030000234588.b.b.a.a	ENSGT01050000244857.A.a.a	ENSGT00940000157200.u.a	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000163454.a.b	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Yellowtail amberjack	MODERN SPECIES	2641	c2cd5 (ENSSLDG00000018762)	tnni1c (ENSSLDG00000018691)	B4GALNT3 (ENSSLDG00000018635)	fkbp4 (ENSSLDG00000018585)	ddx11 (ENSSLDG00000018470)	wash1 (ENSSLDG00000018390)	ENSSLDG00000018370	ENSSLDG00000017827	ENSSLDG00000017715	ENSSLDG00000017705	ENSSLDG00000017686	ENSSLDG00000017646	cd9a (ENSSLDG00000017617)	vwf (ENSSLDG00000016934)	ANO2 (ENSSLDG00000016720)	cers3b (ENSSLDG00000016672) ##22	cfap161 (ENSSLDG00000016637)	ENSSLDG00000016617	igf1ra (ENSSLDG00000016537)	PGPEP1L (ENSSLDG00000016519)	synm (ENSSLDG00000016510)	TTC23 (ENSSLDG00000016486)	mef2aa (ENSSLDG00000016369)	MCTP2 (ENSSLDG00000016290)
Greater amberjack	MODERN SPECIES	82	c2cd5 (ENSSDUG00000013104)	tnni1c (ENSSDUG00000013077)	B4GALNT3 (ENSSDUG00000013036)	fkbp4 (ENSSDUG00000013003)	ddx11 (ENSSDUG00000012889)	wash1 (ENSSDUG00000012855)	IQSEC3 (ENSSDUG00000012824)	ENSSDUG00000012730	OTOGL (ENSSDUG00000012590)	ENSSDUG00000012564	ENSSDUG00000012549	cd9a (ENSSDUG00000012530)	vwf (ENSSDUG00000012407)	ENSSDUG00000012362	ENSSDUG00000012337	cers3b (ENSSDUG00000012314) ##22	cfap161 (ENSSDUG00000012294)	ENSSDUG00000012285	igf1ra (ENSSDUG00000012197)	PGPEP1L (ENSSDUG00000012180)	synm (ENSSDUG00000012177)	TTC23 (ENSSDUG00000012169)	mef2aa (ENSSDUG00000012126)	MCTP2 (ENSSDUG00000012092)	nr2f2 (ENSSDUG00000012075)	lysmd4 (ENSSDUG00000012056)	rgma (ENSSDUG00000012034)	ENSSDUG00000012025	chd2 (ENSSDUG00000011962)	fam174b (ENSSDUG00000011946)	st8sia2 (ENSSDUG00000011877)
Barramundi perch	MODERN SPECIES	97	lmf2a (ENSLCAG00010010460)	c2cd5 (ENSLCAG00010010424)	tnni1c (ENSLCAG00010010409)	B4GALNT3 (ENSLCAG00010010392)	fkbp4 (ENSLCAG00010010350)	ddx11 (ENSLCAG00010010019)	wash1 (ENSLCAG00010009916)	IQSEC3 (ENSLCAG00010009909)	ENSLCAG00010009888	OTOGL (ENSLCAG00010009853)	ENSLCAG00010009842	ENSLCAG00010009841	cd9a (ENSLCAG00010009837)	vwf (ENSLCAG00010009725)	ANO2 (ENSLCAG00010009653)	cers3b (ENSLCAG00010009623) ##22	cfap161 (ENSLCAG00010009616)	ENSLCAG00010009614	igf1ra (ENSLCAG00010007343)	PGPEP1L (ENSLCAG00010006729)	synm (ENSLCAG00010006725)	TTC23 (ENSLCAG00010006718)	mef2aa (ENSLCAG00010006701)	ENSLCAG00010006673	nr2f2 (ENSLCAG00010006634)	lysmd4 (ENSLCAG00010006616)	ENSLCAG00010006609	rgma (ENSLCAG00010006607)	chd2 (ENSLCAG00010006020)	fam174b (ENSLCAG00010005886)	st8sia2 (ENSLCAG00010005877)
Anabantaria	ANCESTRAL SPECIES	5	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000177018	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Anabantoidei	ANCESTRAL SPECIES	5	ENSGT00390000016211	ENSGT00530000063702.a.a	ENSGT00390000000212	ENSGT01050000244857.A.a.a	ENSGT00940000157200	ENSGT00950000182970.B	ENSGT00390000016717	ENSGT00940000155908.b	ENSGT00940000167492	ENSGT00940000160698	ENSGT00940000155394.i.b	ENSGT00390000002417	ENSGT00940000155083.b.a.a	ENSGT00940000155810	ENSGT00940000155840.A	ENSGT01030000234515.a.b.a.b.b ##22	ENSGT00390000018488	ENSGT00940000156682.e.b	ENSGT00390000015368.a.b	ENSGT00940000159268	ENSGT00530000063847.a	ENSGT00940000156205.h	ENSGT00940000156291.f	ENSGT00940000157540.A	ENSGT00940000160583	ENSGT00950000183112.a	ENSGT00940000174630	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f.m
Climbing perch	MODERN SPECIES	19	lmf2a (ENSATEG00000003095)	c2cd5 (ENSATEG00000003112)	ENSATEG00000003136	fkbp4 (ENSATEG00000003145)	ddx11 (ENSATEG00000003156)	wash1 (ENSATEG00000003299)	ENSATEG00000025982	ENSATEG00000003377	ENSATEG00000003590	ENSATEG00000003879	ENSATEG00000003953	cd9a (ENSATEG00000003995)	vwf (ENSATEG00000004353)	ENSATEG00000004782	ENSATEG00000028374	cers3b (ENSATEG00000004897) ##22	ENSATEG00000004952	igf1ra (ENSATEG00000004963)	ENSATEG00000005043	synm (ENSATEG00000005115)	TTC23 (ENSATEG00000005128)	mef2aa (ENSATEG00000005135)	ENSATEG00000005182	nr2f2 (ENSATEG00000003471)	lysmd4 (ENSATEG00000005221)	rgma (ENSATEG00000005223)	ENSATEG00000005225	chd2 (ENSATEG00000005246)	fam174b (ENSATEG00000005411)	st8sia2 (ENSATEG00000005428)	slco3a1a (ENSATEG00000005441)
Siamese fighting fish	MODERN SPECIES	17	ADM2 (ENSBSLG00000015097)	miox (ENSBSLG00000015103)	lmf2a (ENSBSLG00000015131)	c2cd5 (ENSBSLG00000015848)	ENSBSLG00000015957	ENSBSLG00000015965	B4GALNT3 (ENSBSLG00000015978)	fkbp4 (ENSBSLG00000016122)	ddx11 (ENSBSLG00000016195)	wash1 (ENSBSLG00000016345)	ENSBSLG00000016360	ENSBSLG00000016396	ENSBSLG00000016404	cd9a (ENSBSLG00000016409)	ENSBSLG00000016558	cers3b (ENSBSLG00000017456) ##22	cfap161 (ENSBSLG00000017481)	igf1ra (ENSBSLG00000017604)	PGPEP1L (ENSBSLG00000018706)	ENSBSLG00000018708	ENSBSLG00000018710	TTC23 (ENSBSLG00000018713)	mef2aa (ENSBSLG00000018715)	ENSBSLG00000018786	ENSBSLG00000019192	nr2f2 (ENSBSLG00000019419)	lysmd4 (ENSBSLG00000019500)	rgma (ENSBSLG00000019763)	ENSBSLG00000019790	chd2 (ENSBSLG00000019945)	fam174b (ENSBSLG00000020580)
Zig-zag eel	MODERN SPECIES	20	lmf2a (ENSMAMG00000010878)	c2cd5 (ENSMAMG00000010750)	ENSMAMG00000010703	fkbp4 (ENSMAMG00000010684)	ddx11 (ENSMAMG00000010598)	wash1 (ENSMAMG00000010562)	ENSMAMG00000010526	ENSMAMG00000010331	ENSMAMG00000010306	ENSMAMG00000010219	ENSMAMG00000010177	ENSMAMG00000010131	cd9a (ENSMAMG00000026334)	vwf (ENSMAMG00000009852)	ENSMAMG00000009779	cers3b (ENSMAMG00000009696) ##22	ENSMAMG00000009685	igf1ra (ENSMAMG00000009545)	PGPEP1L (ENSMAMG00000009527)	synm (ENSMAMG00000009518)	TTC23 (ENSMAMG00000009502)	mef2aa (ENSMAMG00000009369)	ENSMAMG00000009351	nr2f2 (ENSMAMG00000009329)	lysmd4 (ENSMAMG00000027150)	rgma (ENSMAMG00000009316)	ENSMAMG00000027194	chd2 (ENSMAMG00000009082)	fam174b (ENSMAMG00000024575)	st8sia2 (ENSMAMG00000009044)	slco3a1a (ENSMAMG00000009001)
Pinecone sodierfish	MODERN SPECIES	20	tnni1c (ENSMMDG00005014728)	B4GALNT3 (ENSMMDG00005014721)	fkbp4 (ENSMMDG00005014705)	ddx11 (ENSMMDG00005013416)	wash1 (ENSMMDG00005013374)	ENSMMDG00005013368	ENSMMDG00005013358	ENSMMDG00005013354	OTOGL (ENSMMDG00005013346)	ENSMMDG00005013334	ENSMMDG00005013326	cd9a (ENSMMDG00005013314)	ENSMMDG00005013306	ENSMMDG00005013299	ENSMMDG00005013297	cers3b (ENSMMDG00005013277) ##22	cfap161 (ENSMMDG00005013272)	ENSMMDG00005013271	igf1ra (ENSMMDG00005013270)	ENSMMDG00005013265	synm (ENSMMDG00005013262)	ENSMMDG00005013143	mef2aa (ENSMMDG00005012981)	MCTP2 (ENSMMDG00005012971)	nr2f2 (ENSMMDG00005012931)	lysmd4 (ENSMMDG00005012929)	ENSMMDG00005012928	rgma (ENSMMDG00005012926)	chd2 (ENSMMDG00005002091)	fam174b (ENSMMDG00005001801)	st8sia2 (ENSMMDG00005001790)
Cod	MODERN SPECIES	22	ENSGMOG00000020359	cnot2 (ENSGMOG00000016382)	ENSGMOG00000016333	ENSGMOG00000034862	ENSGMOG00000016320	ENSGMOG00000014687	ENSGMOG00000029964	ENSGMOG00000025767	ENSGMOG00000014855	ENSGMOG00000008570	ENSGMOG00000031723	cd9a (ENSGMOG00000015042)	vwf (ENSGMOG00000015064)	ENSGMOG00000024913	ANO2 (ENSGMOG00000015196)	cers3b (ENSGMOG00000015263) ##22	ENSGMOG00000033152	ENSGMOG00000015286	ENSGMOG00000023120	igf1ra (ENSGMOG00000015335)	ENSGMOG00000015381	ENSGMOG00000026749	mef2aa (ENSGMOG00000015431)	ENSGMOG00000032612	nr2f2 (ENSGMOG00000015515)	lysmd4 (ENSGMOG00000026827)	rgma (ENSGMOG00000032458)	chd2 (ENSGMOG00000002890)	ENSGMOG00000034902	fam174b (ENSGMOG00000023113)	st8sia2 (ENSGMOG00000013018)
Osteoglossiformes	ANCESTRAL SPECIES	13	ENSGT00940000161629.a.a	ENSGT00390000008092.b.a.b	ENSGT00390000017392	ENSGT00390000017625.i	ENSGT00390000007857.a	ENSGT00940000154170.B	ENSGT00530000063760.a.m ##32	ENSGT00940000159506.a	ENSGT00940000166109	ENSGT01050000244857.C.a.a.i	ENSGT00940000160363	ENSGT00940000158815.e	ENSGT00940000158068	ENSGT00390000001790	ENSGT00990000210243	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000063851.a.a.a	ENSGT00390000017791	ENSGT00940000160833.a	ENSGT00390000008646	ENSGT00990000203849	ENSGT00940000158198.a	ENSGT00940000153636.a.a	ENSGT00910000144335.e	ENSGT00940000159159.g	ENSGT01050000244942.a.a	ENSGT00940000160013.d	ENSGT00550000074806	ENSGT00390000007252.d	ENSGT00940000158143.bb.b
P. kingsleyae	MODERN SPECIES	14	UBAP1L (ENSPKIG00000016932)	pdcd7 (ENSPKIG00000016945)	CLPX (ENSPKIG00000016970)	spg21 (ENSPKIG00000017029)	ankdd1a (ENSPKIG00000017082)	PLEKHO2 (ENSPKIG00000017126) ##32	PCSK6 (ENSPKIG00000017198)	selenos (ENSPKIG00000017282)	chsy1 (ENSPKIG00000017312)	LRRK1 (ENSPKIG00000017382)	aldh1a3 (ENSPKIG00000017513)	asb7 (ENSPKIG00000017551)	ENSPKIG00000017561	ENSPKIG00000017578	ENSPKIG00000017586	cers3b (ENSPKIG00000017601) ##22	ADAMTS17 (ENSPKIG00000017629)	MINAR1 (ENSPKIG00000017670)	mthfs (ENSPKIG00000017707)	ZFAND6 (ENSPKIG00000017741)	fah (ENSPKIG00000017777)	ENSPKIG00000017817	arnt2 (ENSPKIG00000017852)	CEMIP (ENSPKIG00000017978)	TLNRD1 (ENSPKIG00000018170)	IL16 (ENSPKIG00000018194)	TMC3 (ENSPKIG00000018303)	mex3b (ENSPKIG00000018385)	EFL1 (ENSPKIG00000018456)	saxo2 (ENSPKIG00000018629)	ENSPKIG00000018709
Asian bonytongue	MODERN SPECIES	2	mtfmt (ENSSFOG00015017491)	rasl12 (ENSSFOG00015028507)	KBTBD13 (ENSSFOG00015017456)	pdcd7 (ENSSFOG00015029796)	CLPX (ENSSFOG00015017409)	spg21 (ENSSFOG00015017369)	ankdd1a (ENSSFOG00015017337)	ENSSFOG00015027968 ##32	PCSK6 (ENSSFOG00015017261)	selenos (ENSSFOG00015017233)	chsy1 (ENSSFOG00015016062)	LRRK1 (ENSSFOG00015016995)	aldh1a3 (ENSSFOG00015016944)	asb7 (ENSSFOG00015016937)	ENSSFOG00015030726	cers3b (ENSSFOG00015016893) ##22	ADAMTS17 (ENSSFOG00015016848)	MINAR1 (ENSSFOG00015016824)	ZFAND6 (ENSSFOG00015016798)	fah (ENSSFOG00015016747)	mthfs (ENSSFOG00015016711)	arnt2 (ENSSFOG00015016649)	ABHD17C (ENSSFOG00015016621)	CEMIP (ENSSFOG00015016497)	mesd (ENSSFOG00015016460)	TLNRD1 (ENSSFOG00015016451)	ENSSFOG00015025430	ENSSFOG00015024783	STARD5 (ENSSFOG00015029401)	TMC3 (ENSSFOG00015016330)	MEX3B (ENSSFOG00015033205)
Spotted gar	MODERN SPECIES	669	med20 (ENSLOCG00000012654)	bysl (ENSLOCG00000012661)	ccnd3 (ENSLOCG00000012668)	taf8 (ENSLOCG00000012673)	ENSLOCG00000012681	NUAK2 (ENSLOCG00000012687)	tmcc2 (ENSLOCG00000012691)	dstyk (ENSLOCG00000012699)	FRS3 (ENSLOCG00000012711)	ENSLOCG00000012718	CTSE (ENSLOCG00000012725)	RAB7B (ENSLOCG00000012730)	aldh1a3 (ENSLOCG00000012733)	asb7 (ENSLOCG00000012745)	LINS1 (ENSLOCG00000012748)	cers3b (ENSLOCG00000012751) ##22	ADAMTS17 (ENSLOCG00000012754)	MINAR1 (ENSLOCG00000012763)	mthfs (ENSLOCG00000012766)	ZFAND6 (ENSLOCG00000012770)	fah (ENSLOCG00000012774)	arnt2 (ENSLOCG00000012783)	ENSLOCG00000012797	abhd17c (ENSLOCG00000012801)	ENSLOCG00000012806	CEMIP (ENSLOCG00000012817)	mesd (ENSLOCG00000012824)	TLNRD1 (ENSLOCG00000012828)	cfap161 (ENSLOCG00000012830)	IL16 (ENSLOCG00000012837)	STARD5 (ENSLOCG00000012843)
Reedfish	MODERN SPECIES	8	foxd7 (ENSECRG00000018952)	ecsit (ENSECRG00000018979)	ENSECRG00000018996	fdx2 (ENSECRG00000019024)	s1pr5b (ENSECRG00000019068)	keap1b (ENSECRG00000019072)	ENSECRG00000019100	PDE4A (ENSECRG00000019124)	snrpa1 (ENSECRG00000019177)	selenos (ENSECRG00000019200)	chsy1 (ENSECRG00000019218)	ENSECRG00000019236	aldh1a3 (ENSECRG00000019329)	asb7 (ENSECRG00000019395)	ENSECRG00000019431	cers3b (ENSECRG00000019454) ##22	ADAMTS17 (ENSECRG00000019513)	ENSECRG00000019633	MINAR1 (ENSECRG00000019647)	ENSECRG00000019665	mthfs (ENSECRG00000019681)	ZFAND6 (ENSECRG00000019692)	fah (ENSECRG00000019709)	ENSECRG00000019723	abhd17c (ENSECRG00000019733)	ENSECRG00000019746	STARD5 (ENSECRG00000019762)	TMC3 (ENSECRG00000019816)	EFL1 (ENSECRG00000019966)	saxo2 (ENSECRG00000020039)	ADAMTSL3 (ENSECRG00000020086)
Sarcopterygii	ANCESTRAL SPECIES	9	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583
Tetrapoda	ANCESTRAL SPECIES	11	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Amniota	ANCESTRAL SPECIES	15	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Mammalia	ANCESTRAL SPECIES	45								ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Theria	ANCESTRAL SPECIES	22	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000167112	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343
Eutheria	ANCESTRAL SPECIES	8	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Atlantogenata	ANCESTRAL SPECIES	2								ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Afrotheria	ANCESTRAL SPECIES	20								ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Tenrec	MODERN SPECIES	4729																CERS3 (ENSETEG00000014290) ##22
Afrotheria_a	ANCESTRAL SPECIES	19								ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Elephant	MODERN SPECIES	285							PCSK6 (ENSLAFG00000012645)	SNRPA1 (ENSLAFG00000012638)	SELENOS (ENSLAFG00000004170)	CHSY1 (ENSLAFG00000004168)	ENSLAFG00000030675	LRRK1 (ENSLAFG00000008742)	ALDH1A3 (ENSLAFG00000010792)	ASB7 (ENSLAFG00000010803)	LINS1 (ENSLAFG00000006970)	CERS3 (ENSLAFG00000006966) ##22	ADAMTS17 (ENSLAFG00000015058)	LYSMD4 (ENSLAFG00000032601)	MEF2A (ENSLAFG00000004656)	LRRC28 (ENSLAFG00000009935)	TTC23 (ENSLAFG00000009934)	ENSLAFG00000009928	IGF1R (ENSLAFG00000011658)	ENSLAFG00000011319	ENSLAFG00000032652	ARRDC4 (ENSLAFG00000014595)	NR2F2 (ENSLAFG00000014404)	ENSLAFG00000027420	MCTP2 (ENSLAFG00000008192)	RGMA (ENSLAFG00000017265)	CHD2 (ENSLAFG00000016885)
Hyrax	MODERN SPECIES	4005																CERS3 (ENSPCAG00000005020) ##22
Xenarthra	ANCESTRAL SPECIES	382								ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205
Sloth	MODERN SPECIES	4357																CERS3 (ENSCHOG00000000584) ##22
Armadillo	MODERN SPECIES	1893								PCSK6 (ENSDNOG00000014235)	ENSDNOG00000048661	SELENOS (ENSDNOG00000010694)	CHSY1 (ENSDNOG00000041615)	LRRK1 (ENSDNOG00000019431)	ALDH1A3 (ENSDNOG00000008605)	ASB7 (ENSDNOG00000001388)	LINS1 (ENSDNOG00000042301)	CERS3 (ENSDNOG00000000001) ##22	ENSDNOG00000048146	ADAMTS17 (ENSDNOG00000009630)	LYSMD4 (ENSDNOG00000041967)	MEF2A (ENSDNOG00000018848)
Boreoeutheria	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Euarchontoglires	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Primates	ANCESTRAL SPECIES	2	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Haplorrhini	ANCESTRAL SPECIES	49	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Simiiformes	ANCESTRAL SPECIES	28	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000170417	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00940000157540.A	ENSGT00940000156291
Catarrhini	ANCESTRAL SPECIES	9	ENSGT00940000163199	ENSGT00940000163079	ENSGT00940000162675	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00530000063727.A.j
Hominoidea	ANCESTRAL SPECIES	28		ENSGT00940000162706	ENSGT00940000162683	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00530000063727.A.j	ENSGT00950000182926.b.d.c.b.b.c.a.b
Hominidae	ANCESTRAL SPECIES	27		ENSGT00940000162706	ENSGT00940000162683	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00390000010718	ENSGT00530000063727.A.j	ENSGT00950000182926.b.d.c.b.b.c.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	30	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.q.a.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT00940000159832.j	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00910000147385	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00390000010718	ENSGT00530000063727.A.j
Homo/Pan group	ANCESTRAL SPECIES	29	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.q.a.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT00940000159832.j	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00910000147385	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00390000010718	ENSGT00530000063727.A.j	ENSGT00950000182926.b.d.c.b.b.c.a.b
Pan	ANCESTRAL SPECIES	34	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.q.a.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT00940000159832.j	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00910000147385	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00390000010718	ENSGT00530000063727.A.j	ENSGT00950000182926.b.d.c.b.b.c.a.b
Bonobo	MODERN SPECIES	6			TARS3 (ENSPPAG00000040066)	TM2D3 (ENSPPAG00000036970)	PCSK6 (ENSPPAG00000038311)	SNRPA1 (ENSPPAG00000032059)	ENSPPAG00000030891	CHSY1 (ENSPPAG00000040784)	LRRK1 (ENSPPAG00000038425)	ALDH1A3 (ENSPPAG00000042248)	ENSPPAG00000024957	ENSPPAG00000025640	ASB7 (ENSPPAG00000037625)	LINS1 (ENSPPAG00000043486)	ENSPPAG00000040932	CERS3 (ENSPPAG00000013166) ##22	ADAMTS17 (ENSPPAG00000030123)	ENSPPAG00000027515	LYSMD4 (ENSPPAG00000033271)	MEF2A (ENSPPAG00000035128)	ENSPPAG00000035949	LRRC28 (ENSPPAG00000029842)	TTC23 (ENSPPAG00000031239)	SYNM (ENSPPAG00000040616)	ENSPPAG00000029943	IGF1R (ENSPPAG00000027660)	ENSPPAG00000029563	ARRDC4 (ENSPPAG00000040079)	ENSPPAG00000036593	ENSPPAG00000039383	ENSPPAG00000031306
Chimpanzee	MODERN SPECIES	6	ENSPTRG00000045030	OR4F15 (ENSPTRG00000047900)	OR4F6 (ENSPTRG00000048173)	TARS3 (ENSPTRG00000007516)	TM2D3 (ENSPTRG00000007515)	PCSK6 (ENSPTRG00000007514)	SNRPA1 (ENSPTRG00000007513)	SELENOS (ENSPTRG00000007512)	LRRK1 (ENSPTRG00000007510)	ALDH1A3 (ENSPTRG00000007508)	ENSPTRG00000046514	ENSPTRG00000044118	ASB7 (ENSPTRG00000007507)	LINS1 (ENSPTRG00000023792)	ENSPTRG00000045103	CERS3 (ENSPTRG00000007502) ##22	ADAMTS17 (ENSPTRG00000007500)	ENSPTRG00000047954	LYSMD4 (ENSPTRG00000007497)	MEF2A (ENSPTRG00000007496)	ENSPTRG00000046616	LRRC28 (ENSPTRG00000007495)	TTC23 (ENSPTRG00000007494)	SYNM (ENSPTRG00000007493)	ENSPTRG00000007492	IGF1R (ENSPTRG00000007489)	FAM169B (ENSPTRG00000042426)	ARRDC4 (ENSPTRG00000007487)	SPATA8 (ENSPTRG00000007486)	ENSPTRG00000045669	ENSPTRG00000044433
Human	MODERN SPECIES	6			OR4F4 (ENSG00000177693)	OR4F15 (ENSG00000182854)	OR4F6 (ENSG00000184140)	TARS3 (ENSG00000185418)	TM2D3 (ENSG00000184277)	PCSK6 (ENSG00000140479)	SNRPA1 (ENSG00000131876)	SELENOS (ENSG00000131871)	CHSY1 (ENSG00000131873)	LRRK1 (ENSG00000154237)	ALDH1A3 (ENSG00000184254)	ASB7 (ENSG00000183475)	LINS1 (ENSG00000140471)	CERS3 (ENSG00000154227) ##22	ADAMTS17 (ENSG00000140470)	LYSMD4 (ENSG00000183060)	MEF2A (ENSG00000068305)	LRRC28 (ENSG00000168904)	TTC23 (ENSG00000103852)	SYNM (ENSG00000182253)	PGPEP1L (ENSG00000183571)	IGF1R (ENSG00000140443)	ARRDC4 (ENSG00000140450)	NR2F2 (ENSG00000185551)	MCTP2 (ENSG00000140563)	RGMA (ENSG00000182175)	CHD2 (ENSG00000173575)	FAM174B (ENSG00000185442)	ST8SIA2 (ENSG00000140557)
Gorilla	MODERN SPECIES	6	ENSGGOG00000038956	TARS3 (ENSGGOG00000007839)	TM2D3 (ENSGGOG00000011598)	PCSK6 (ENSGGOG00000008971)	SNRPA1 (ENSGGOG00000028077)	ENSGGOG00000008959	CHSY1 (ENSGGOG00000008955)	LRRK1 (ENSGGOG00000000058)	ALDH1A3 (ENSGGOG00000000056)	ENSGGOG00000026486	ENSGGOG00000038233	ENSGGOG00000038031	ASB7 (ENSGGOG00000028021)	LINS1 (ENSGGOG00000004632)	ENSGGOG00000042229	CERS3 (ENSGGOG00000007168) ##22	ADAMTS17 (ENSGGOG00000007711)	ENSGGOG00000042432	ENSGGOG00000014741	ENSGGOG00000043013	MEF2A (ENSGGOG00000013064)	ENSGGOG00000028040	LRRC28 (ENSGGOG00000023721)	TTC23 (ENSGGOG00000014879)	SYNM (ENSGGOG00000014873)	ENSGGOG00000006243	IGF1R (ENSGGOG00000012828)	FAM169B (ENSGGOG00000026252)	ARRDC4 (ENSGGOG00000008862)	ENSGGOG00000014320	ENSGGOG00000002167
Orangutan	MODERN SPECIES	6		ENSPPYG00000006834	ENSPPYG00000032870	ENSPPYG00000006831	TARS3 (ENSPPYG00000006830)	TM2D3 (ENSPPYG00000006829)	PCSK6 (ENSPPYG00000006828)	ENSPPYG00000035701	SNRPA1 (ENSPPYG00000006827)	SELENOS (ENSPPYG00000006826)	CHSY1 (ENSPPYG00000006825)	LRRK1 (ENSPPYG00000006824)	ALDH1A3 (ENSPPYG00000006823)	ASB7 (ENSPPYG00000006821)	LINS1 (ENSPPYG00000041645)	CERS3 (ENSPPYG00000006820) ##22	ADAMTS17 (ENSPPYG00000006819)	LYSMD4 (ENSPPYG00000006817)	ENSPPYG00000033820	MEF2A (ENSPPYG00000006816)	LRRC28 (ENSPPYG00000006813)	TTC23 (ENSPPYG00000006812)	SYNM (ENSPPYG00000006810)	ENSPPYG00000006809	IGF1R (ENSPPYG00000006808)	ARRDC4 (ENSPPYG00000006806)	ENSPPYG00000030289	NR2F2 (ENSPPYG00000006802)	ENSPPYG00000038259	ENSPPYG00000037840	MCTP2 (ENSPPYG00000006801)
Gibbon	MODERN SPECIES	21						TARS3 (ENSNLEG00000000541)	TM2D3 (ENSNLEG00000000529)	PCSK6 (ENSNLEG00000000500)	SNRPA1 (ENSNLEG00000000439)	ENSNLEG00000000408	CHSY1 (ENSNLEG00000030188)	LRRK1 (ENSNLEG00000001049)	ALDH1A3 (ENSNLEG00000001039)	ASB7 (ENSNLEG00000001029)	LINS1 (ENSNLEG00000001012)	CERS3 (ENSNLEG00000000966) ##22	ADAMTS17 (ENSNLEG00000000963)	ENSNLEG00000032622	MEF2A (ENSNLEG00000000911)	ENSNLEG00000034332	LRRC28 (ENSNLEG00000030887)	TTC23 (ENSNLEG00000035969)	SYNM (ENSNLEG00000000835)	ENSNLEG00000000830	IGF1R (ENSNLEG00000000814)	ENSNLEG00000000811	ARRDC4 (ENSNLEG00000012421)	ENSNLEG00000012420	NR2F2 (ENSNLEG00000012412)	ENSNLEG00000028326	ENSNLEG00000029881
Cercopithecidae	ANCESTRAL SPECIES	7	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000163079	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000147756	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A
Cercopithecinae	ANCESTRAL SPECIES	2	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000163079	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000147756	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000170417	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A
Cercopithecinae_a	ANCESTRAL SPECIES	1	ENSGT00940000155253	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000163079	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291
Macaca	ANCESTRAL SPECIES	1	ENSGT00940000162683	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000163079	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.b	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000170417	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A
Pig-tailed macaque	MODERN SPECIES	281	OR4K15 (ENSMNEG00000029269)	OR4K17 (ENSMNEG00000003536)	OR4F6 (ENSMNEG00000028223)	ENSMNEG00000028238	TARS3 (ENSMNEG00000034952)	TM2D3 (ENSMNEG00000042388)	PCSK6 (ENSMNEG00000002880)	SNRPA1 (ENSMNEG00000044916)	SELENOS (ENSMNEG00000038487)	CHSY1 (ENSMNEG00000005874)	LRRK1 (ENSMNEG00000032623)	ALDH1A3 (ENSMNEG00000034012)	ENSMNEG00000037962	ASB7 (ENSMNEG00000043346)	LINS1 (ENSMNEG00000029684)	CERS3 (ENSMNEG00000035788) ##22	ADAMTS17 (ENSMNEG00000042254)
Macaca_a	ANCESTRAL SPECIES	2	ENSGT00940000162920	ENSGT00940000162706	ENSGT00940000162683	ENSGT00940000163067	ENSGT00940000163199	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.a.b	ENSGT00940000160583	ENSGT00910000147385	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000170417	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00940000164709.a.b.b.a.b.a.a.a.a.a.b.b	ENSGT01100000263539.a.a.b.b.b.a.a.b.b.a	ENSGT00940000160523	ENSGT00940000157540.A
Crab-eating macaque	MODERN SPECIES	17	ENSMFAG00000060991	OR4F15 (ENSMFAG00000050806)	OR4F6 (ENSMFAG00000056063)	ENSMFAG00000003286	TARS3 (ENSMFAG00000001902)	TM2D3 (ENSMFAG00000021961)	PCSK6 (ENSMFAG00000032907)	SNRPA1 (ENSMFAG00000021023)	SELENOS (ENSMFAG00000001376)	CHSY1 (ENSMFAG00000041311)	LRRK1 (ENSMFAG00000023538)	ALDH1A3 (ENSMFAG00000041683)	ENSMFAG00000050890	ASB7 (ENSMFAG00000032871)	LINS1 (ENSMFAG00000044048)	CERS3 (ENSMFAG00000043799) ##22	ENSMFAG00000050621	ENSMFAG00000059311	ADAMTS17 (ENSMFAG00000005645)	ENSMFAG00000031279	ENSMFAG00000031744	ENSMFAG00000050734	ENSMFAG00000058401	ENSMFAG00000055169	LYSMD4 (ENSMFAG00000063244)	ENSMFAG00000036413	MEF2A (ENSMFAG00000041738)	ENSMFAG00000041446	LRRC28 (ENSMFAG00000033850)	TTC23 (ENSMFAG00000031232)	SYNM (ENSMFAG00000037324)
Rhesus	MODERN SPECIES	17	OR4N5 (ENSMMUG00000061666)	ENSMMUG00000023314	OR4F15 (ENSMMUG00000052931)	OR4F6 (ENSMMUG00000055595)	ENSMMUG00000057402	TARS3 (ENSMMUG00000000278)	TM2D3 (ENSMMUG00000000277)	PCSK6 (ENSMMUG00000011829)	SNRPA1 (ENSMMUG00000053633)	ENSMMUG00000057980	CHSY1 (ENSMMUG00000011819)	LRRK1 (ENSMMUG00000013325)	ALDH1A3 (ENSMMUG00000006659)	ASB7 (ENSMMUG00000016504)	LINS1 (ENSMMUG00000016503)	CERS3 (ENSMMUG00000016498) ##22	ADAMTS17 (ENSMMUG00000021160)	ENSMMUG00000052374	ENSMMUG00000045944	LYSMD4 (ENSMMUG00000018124)	ENSMMUG00000054929	ENSMMUG00000056179	MEF2A (ENSMMUG00000018122)	LRRC28 (ENSMMUG00000005226)	TTC23 (ENSMMUG00000005224)	SYNM (ENSMMUG00000005220)	PGPEP1L (ENSMMUG00000012309)	IGF1R (ENSMMUG00000012305)	ENSMMUG00000058735	ENSMMUG00000063552	ENSMMUG00000002531
Cercopithecinae_b	ANCESTRAL SPECIES	8	ENSGT00940000164231	ENSGT00940000162920	ENSGT01010000222921.a	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506.k	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000147756	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291
Olive baboon	MODERN SPECIES	17	ENSPANG00000045149	ENSPANG00000041857	OR4F15 (ENSPANG00000050342)	OR4F6 (ENSPANG00000048360)	TARS3 (ENSPANG00000022401)	TM2D3 (ENSPANG00000022400)	ENSPANG00000045861	ENSPANG00000011167	SNRPA1 (ENSPANG00000020921)	SELENOS (ENSPANG00000005903)	CHSY1 (ENSPANG00000011169)	LRRK1 (ENSPANG00000003917)	ALDH1A3 (ENSPANG00000020509)	ASB7 (ENSPANG00000022569)	LINS1 (ENSPANG00000020510)	CERS3 (ENSPANG00000018569) ##22	ENSPANG00000046869	ADAMTS17 (ENSPANG00000024123)	LYSMD4 (ENSPANG00000026182)	MEF2A (ENSPANG00000026183)	LRRC28 (ENSPANG00000021052)	ENSPANG00000046080	TTC23 (ENSPANG00000026184)	SYNM (ENSPANG00000020514)	PGPEP1L (ENSPANG00000020511)	IGF1R (ENSPANG00000021053)	ENSPANG00000048949	ENSPANG00000045122	ENSPANG00000020922	NR2F2 (ENSPANG00000023215)	MCTP2 (ENSPANG00000023213)
Cercopithecinae_d	ANCESTRAL SPECIES	60	ENSGT00940000163860	ENSGT00940000164231	ENSGT01010000222921.a	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506.k	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000147756	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00530000062932.c.a.a.a.a.a.b.a.a.b.b	ENSGT00940000160583	ENSGT00910000147385	ENSGT00910000146870	ENSGT00940000156205	ENSGT00910000148191	ENSGT00940000157771	ENSGT01020000230401.b.a.m.a	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00510000048902.b	ENSGT00390000011698.c.a.c.a.i
Drill	MODERN SPECIES	1451		ENSMLEG00000032204	ENSMLEG00000036484	TARS3 (ENSMLEG00000035535)	TM2D3 (ENSMLEG00000032831)	PCSK6 (ENSMLEG00000038209)	SNRPA1 (ENSMLEG00000037995)	SELENOS (ENSMLEG00000039157)	CHSY1 (ENSMLEG00000031188)	LRRK1 (ENSMLEG00000043361)	ALDH1A3 (ENSMLEG00000042904)	ENSMLEG00000038414	ASB7 (ENSMLEG00000035896)	LINS1 (ENSMLEG00000030448)	ENSMLEG00000043442	CERS3 (ENSMLEG00000036165) ##22
Sooty mangabey	MODERN SPECIES	215	OR4Q2 (ENSCATG00000042411)	OR4K13 (ENSCATG00000016978)	OR4K17 (ENSCATG00000005459)	ENSCATG00000041544	TARS3 (ENSCATG00000037383)	TM2D3 (ENSCATG00000045049)	PCSK6 (ENSCATG00000010791)	SNRPA1 (ENSCATG00000025462)	SELENOS (ENSCATG00000031412)	CHSY1 (ENSCATG00000040050)	LRRK1 (ENSCATG00000044160)	ALDH1A3 (ENSCATG00000028904)	ENSCATG00000032691	ASB7 (ENSCATG00000030092)	LINS1 (ENSCATG00000038557)	CERS3 (ENSCATG00000042107) ##22	ADAMTS17 (ENSCATG00000022071)	ENSCATG00000039199	LYSMD4 (ENSCATG00000045215)	ENSCATG00000041680	MEF2A (ENSCATG00000013642)	ENSCATG00000022742	LRRC28 (ENSCATG00000040008)	ENSCATG00000013868	TTC23 (ENSCATG00000030495)	SYNM (ENSCATG00000025065)	PGPEP1L (ENSCATG00000028080)	IGF1R (ENSCATG00000027553)	ENSCATG00000036401	ENSCATG00000037029	ARRDC4 (ENSCATG00000042268)
Vervet Monkey	MODERN SPECIES	21	ENSCSAG00000000362	ENSCSAG00000016813	ENSCSAG00000016817	OR4F6 (ENSCSAG00000000363)	ENSCSAG00000016821	TARS3 (ENSCSAG00000016828)	TM2D3 (ENSCSAG00000016830)	PCSK6 (ENSCSAG00000016835)	SNRPA1 (ENSCSAG00000016839)	SELENOS (ENSCSAG00000016843)	CHSY1 (ENSCSAG00000016847)	LRRK1 (ENSCSAG00000016858)	ALDH1A3 (ENSCSAG00000016862)	ASB7 (ENSCSAG00000016864)	LINS1 (ENSCSAG00000016869)	CERS3 (ENSCSAG00000016875) ##22	ADAMTS17 (ENSCSAG00000016882)	ENSCSAG00000016905	LYSMD4 (ENSCSAG00000016917)	MEF2A (ENSCSAG00000016929)	ENSCSAG00000000364	LRRC28 (ENSCSAG00000016935)	TTC23 (ENSCSAG00000016940)	SYNM (ENSCSAG00000016942)	PGPEP1L (ENSCSAG00000016947)	IGF1R (ENSCSAG00000016951)	ENSCSAG00000000365	ENSCSAG00000016956	ARRDC4 (ENSCSAG00000016967)	ENSCSAG00000000366	NR2F2 (ENSCSAG00000016974)
Rhinopithecus	ANCESTRAL SPECIES	388				ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000147756	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773
Black snub-nosed monkey	MODERN SPECIES	1369																CERS3 (ENSRBIG00000036358) ##22	ADAMTS17 (ENSRBIG00000027514)
Golden snub-nosed monkey	MODERN SPECIES	2292				TARS3 (ENSRROG00000029492)	TM2D3 (ENSRROG00000045294)	PCSK6 (ENSRROG00000037272)	SNRPA1 (ENSRROG00000038577)	SELENOS (ENSRROG00000039643)	CHSY1 (ENSRROG00000041010)	LRRK1 (ENSRROG00000044403)	ALDH1A3 (ENSRROG00000029441)	ENSRROG00000043733	ENSRROG00000019957	ASB7 (ENSRROG00000040932)	LINS1 (ENSRROG00000038652)	CERS3 (ENSRROG00000015894) ##22	ADAMTS17 (ENSRROG00000029698)
Platyrrhini	ANCESTRAL SPECIES	38	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00910000146969	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000170417	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00940000157540.A	ENSGT00940000156291
Cebidae	ANCESTRAL SPECIES	36	ENSGT00940000156900	ENSGT00390000018637	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000170417	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00940000157540.A	ENSGT00940000156291
Cebidae_a	ANCESTRAL SPECIES	86	ENSGT00940000156900	ENSGT00390000018637	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00910000146810	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a
Capuchin	MODERN SPECIES	19				ENSCCAG00000028933	TJP1 (ENSCCAG00000036081)	TARS3 (ENSCCAG00000030068)	TM2D3 (ENSCCAG00000033979)	PCSK6 (ENSCCAG00000029734)	ENSCCAG00000023765	SELENOS (ENSCCAG00000025586)	CHSY1 (ENSCCAG00000030422)	LRRK1 (ENSCCAG00000030657)	ALDH1A3 (ENSCCAG00000028268)	ASB7 (ENSCCAG00000029646)	LINS1 (ENSCCAG00000029271)	CERS3 (ENSCCAG00000020766) ##22	ADAMTS17 (ENSCCAG00000037999)	LYSMD4 (ENSCCAG00000022661)	ENSCCAG00000027834	MEF2A (ENSCCAG00000036413)	LRRC28 (ENSCCAG00000025495)	TTC23 (ENSCCAG00000026153)	SYNM (ENSCCAG00000034101)	IGF1R (ENSCCAG00000030475)	PGPEP1L (ENSCCAG00000025538)	ENSCCAG00000037829	ARRDC4 (ENSCCAG00000020954)	ENSCCAG00000024021	ENSCCAG00000033723	NR2F2 (ENSCCAG00000023106)	ENSCCAG00000034983
Bolivian squirrel monkey	MODERN SPECIES	171	MTMR10 (ENSSBOG00000033433)	FAN1 (ENSSBOG00000022330)	APBA2 (ENSSBOG00000024456)	ENTREP2 (ENSSBOG00000020757)	TJP1 (ENSSBOG00000018738)	TARS3 (ENSSBOG00000029807)	TM2D3 (ENSSBOG00000022550)	PCSK6 (ENSSBOG00000021859)	SNRPA1 (ENSSBOG00000010939)	SELENOS (ENSSBOG00000026383)	CHSY1 (ENSSBOG00000028161)	LRRK1 (ENSSBOG00000033278)	ALDH1A3 (ENSSBOG00000024642)	ASB7 (ENSSBOG00000031530)	LINS1 (ENSSBOG00000024548)	CERS3 (ENSSBOG00000024850) ##22	ADAMTS17 (ENSSBOG00000030629)	LYSMD4 (ENSSBOG00000030181)	ENSSBOG00000032207	MEF2A (ENSSBOG00000020776)	ENSSBOG00000028727	LRRC28 (ENSSBOG00000024533)	TTC23 (ENSSBOG00000023034)	SYNM (ENSSBOG00000010504)	IGF1R (ENSSBOG00000022023)	ENSSBOG00000032516	ENSSBOG00000030960	ARRDC4 (ENSSBOG00000030656)
Marmoset	MODERN SPECIES	18	ENSCJAG00000076541	ENSCJAG00000073911	ENSCJAG00000083661	TJP1 (ENSCJAG00000017370)	TARS3 (ENSCJAG00000017350)	TM2D3 (ENSCJAG00000017340)	PCSK6 (ENSCJAG00000017309)	ENSCJAG00000017268	SELENOS (ENSCJAG00000017258)	CHSY1 (ENSCJAG00000058237)	LRRK1 (ENSCJAG00000017202)	ALDH1A3 (ENSCJAG00000017159)	ENSCJAG00000074763	ASB7 (ENSCJAG00000017150)	LINS1 (ENSCJAG00000017135)	CERS3 (ENSCJAG00000017114) ##22	ADAMTS17 (ENSCJAG00000017094)	LYSMD4 (ENSCJAG00000046782)	MEF2A (ENSCJAG00000017029)	LRRC28 (ENSCJAG00000016965)	ENSCJAG00000076891	TTC23 (ENSCJAG00000016950)	SYNM (ENSCJAG00000016926)	IGF1R (ENSCJAG00000016895)	ENSCJAG00000075634	ENSCJAG00000016887	ARRDC4 (ENSCJAG00000016533)	ENSCJAG00000077952	NR2F2 (ENSCJAG00000047032)	ENSCJAG00000083850	MCTP2 (ENSCJAG00000005975)
Mas night monkey	MODERN SPECIES	785	TICAM2 (ENSANAG00000014623)	TMED7 (ENSANAG00000026472)	ENSANAG00000024133	AGBL1 (ENSANAG00000030461)	NTRK3 (ENSANAG00000034807)	ENSANAG00000034587	MRPL46 (ENSANAG00000023769)	MRPS11 (ENSANAG00000035828)	DET1 (ENSANAG00000031474)	AEN (ENSANAG00000026698)	ENSANAG00000023023	ACAN (ENSANAG00000022078)	HAPLN3 (ENSANAG00000016050)	MFGE8 (ENSANAG00000020190)	LINS1 (ENSANAG00000024421)	CERS3 (ENSANAG00000033014) ##22	ADAMTS17 (ENSANAG00000019818)	LYSMD4 (ENSANAG00000029865)	MEF2A (ENSANAG00000023103)	ENSANAG00000031589	ENSANAG00000030562	TTC23 (ENSANAG00000019664)	ENSANAG00000030470	SYNM (ENSANAG00000036475)	IGF1R (ENSANAG00000037101)	ENSANAG00000034817	ENSANAG00000036512	ENSANAG00000027233	ARRDC4 (ENSANAG00000024674)	ENSANAG00000022018	NR2F2 (ENSANAG00000033910)
Tarsier	MODERN SPECIES	6348														ASB7 (ENSTSYG00000000308)	LINS1 (ENSTSYG00000008283)	CERS3 (ENSTSYG00000005846) ##22
Strepsirrhini	ANCESTRAL SPECIES	2	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Lemuriformes	ANCESTRAL SPECIES	43	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Mouse lemur	MODERN SPECIES	31	MCEE (ENSMICG00000003827)	APBA2 (ENSMICG00000006447)	ENTREP2 (ENSMICG00000006458)	TJP1 (ENSMICG00000006875)	TARS3 (ENSMICG00000013039)	TM2D3 (ENSMICG00000013029)	PCSK6 (ENSMICG00000013008)	SNRPA1 (ENSMICG00000034886)	SELENOS (ENSMICG00000034165)	CHSY1 (ENSMICG00000012976)	ENSMICG00000032515	LRRK1 (ENSMICG00000014823)	ALDH1A3 (ENSMICG00000014808)	ASB7 (ENSMICG00000048035)	LINS1 (ENSMICG00000014778)	CERS3 (ENSMICG00000041869) ##22	ADAMTS17 (ENSMICG00000014739)	LYSMD4 (ENSMICG00000033077)	MEF2A (ENSMICG00000034803)	LRRC28 (ENSMICG00000028987)	TTC23 (ENSMICG00000007312)	SYNM (ENSMICG00000007299)	IGF1R (ENSMICG00000010119)	ENSMICG00000010148	ENSMICG00000045619	ARRDC4 (ENSMICG00000037963)	NR2F2 (ENSMICG00000035561)	ENSMICG00000016758	RGMA (ENSMICG00000026641)	CHD2 (ENSMICG00000000332)	FAM174B (ENSMICG00000046366)
Lemuriformes_a	ANCESTRAL SPECIES	59	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00910000146870	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Greater bamboo lemur	MODERN SPECIES	400	MCEE (ENSPSMG00000006734)	APBA2 (ENSPSMG00000006809)	ENTREP2 (ENSPSMG00000006909)	TJP1 (ENSPSMG00000007148)	ENSPSMG00000007467	TARS3 (ENSPSMG00000007528)	TM2D3 (ENSPSMG00000007576)	PCSK6 (ENSPSMG00000007699)	SNRPA1 (ENSPSMG00000007736)	SELENOS (ENSPSMG00000007785)	CHSY1 (ENSPSMG00000007798)	LRRK1 (ENSPSMG00000007866)	ALDH1A3 (ENSPSMG00000007915)	ASB7 (ENSPSMG00000007939)	ENSPSMG00000007947	CERS3 (ENSPSMG00000007972) ##22	ADAMTS17 (ENSPSMG00000007996)	LYSMD4 (ENSPSMG00000008005)	MEF2A (ENSPSMG00000008190)	LRRC28 (ENSPSMG00000008382)	TTC23 (ENSPSMG00000008409)	SYNM (ENSPSMG00000008451)	IGF1R (ENSPSMG00000008504)	ENSPSMG00000008525	ENSPSMG00000008534	ARRDC4 (ENSPSMG00000008558)
Coquerels sifaka	MODERN SPECIES	266	MCEE (ENSPCOG00000016879)	APBA2 (ENSPCOG00000028736)	ENTREP2 (ENSPCOG00000023045)	ENSPCOG00000028232	TJP1 (ENSPCOG00000017607)	TARS3 (ENSPCOG00000026095)	TM2D3 (ENSPCOG00000000142)	PCSK6 (ENSPCOG00000023960)	SNRPA1 (ENSPCOG00000023397)	SELENOS (ENSPCOG00000020828)	CHSY1 (ENSPCOG00000013861)	LRRK1 (ENSPCOG00000014106)	ALDH1A3 (ENSPCOG00000017094)	ASB7 (ENSPCOG00000014092)	LINS1 (ENSPCOG00000024522)	CERS3 (ENSPCOG00000019634) ##22	ENSPCOG00000023224
Bushbaby	MODERN SPECIES	144	AP3S2 (ENSOGAG00000030982)	ANPEP (ENSOGAG00000032572)	MESP2 (ENSOGAG00000025742)	WDR93 (ENSOGAG00000016610)	PEX11A (ENSOGAG00000009370)	PLIN1 (ENSOGAG00000004946)	PCSK6 (ENSOGAG00000003833)	ENSOGAG00000016898	ENSOGAG00000028584	SELENOS (ENSOGAG00000016896)	CHSY1 (ENSOGAG00000003832)	ENSOGAG00000005869	ENSOGAG00000026287	ALDH1A3 (ENSOGAG00000005864)	ASB7 (ENSOGAG00000000971)	CERS3 (ENSOGAG00000008051) ##22	ADAMTS17 (ENSOGAG00000008047)	LYSMD4 (ENSOGAG00000004357)	MEF2A (ENSOGAG00000008728)	LRRC28 (ENSOGAG00000013426)	TTC23 (ENSOGAG00000013422)	SYNM (ENSOGAG00000028673)	ENSOGAG00000030280	IGF1R (ENSOGAG00000012193)	ENSOGAG00000012202	ENSOGAG00000016690	ARRDC4 (ENSOGAG00000013581)	NR2F2 (ENSOGAG00000032816)	MCTP2 (ENSOGAG00000008665)	ENSOGAG00000025213	RGMA (ENSOGAG00000010419)
Euarchontoglires_A	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Tree shrew	MODERN SPECIES	2662																ENSTBEG00000006374 ##22
Glires	ANCESTRAL SPECIES	15	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Lagomorpha	ANCESTRAL SPECIES	84	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b
Rabbit	MODERN SPECIES	486														ASB7 (ENSOCUG00000014169)	LINS1 (ENSOCUG00000016265)	CERS3 (ENSOCUG00000003828) ##22	ADAMTS17 (ENSOCUG00000015227)	LYSMD4 (ENSOCUG00000024722)	MEF2A (ENSOCUG00000010966)	LRRC28 (ENSOCUG00000006434)	TTC23 (ENSOCUG00000006429)	ENSOCUG00000003341	IGF1R (ENSOCUG00000014795)	ENSOCUG00000014817	ENSOCUG00000005032
Pika	MODERN SPECIES	2344												LRRK1 (ENSOPRG00000006202)	ALDH1A3 (ENSOPRG00000006186)	ASB7 (ENSOPRG00000006179)	LINS1 (ENSOPRG00000006175)	CERS3 (ENSOPRG00000006156) ##22
Rodentia	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Rodentia_A	ANCESTRAL SPECIES	2	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Sciuridae	ANCESTRAL SPECIES	11	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348.b	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Marmotini	ANCESTRAL SPECIES	46	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348.b	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Marmotini_b	ANCESTRAL SPECIES	42	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348.b	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Arctic ground squirrel	MODERN SPECIES	144					ENSUPAG00010009887	TM2D3 (ENSUPAG00010009894)	PCSK6 (ENSUPAG00010009948)	ENSUPAG00010010022	SELENOS (ENSUPAG00010010044)	CHSY1 (ENSUPAG00010010063)	LRRK1 (ENSUPAG00010010074)	ENSUPAG00010010103	ALDH1A3 (ENSUPAG00010010112)	ASB7 (ENSUPAG00010010142)	LINS1 (ENSUPAG00010010149)	CERS3 (ENSUPAG00010010153) ##22	ADAMTS17 (ENSUPAG00010010165)	ENSUPAG00010010228	LYSMD4 (ENSUPAG00010010303)	MEF2A (ENSUPAG00010010308)	ENSUPAG00010010468	LRRC28 (ENSUPAG00010010471)	TTC23 (ENSUPAG00010010490)	SYNM (ENSUPAG00010010495)	IGF1R (ENSUPAG00010010504)	ENSUPAG00010010530	ARRDC4 (ENSUPAG00010010582)
Squirrel	MODERN SPECIES	83	NSMCE3 (ENSSTOG00000000177)	ENSSTOG00000030901	TJP1 (ENSSTOG00000011142)	TARS3 (ENSSTOG00000032725)	TM2D3 (ENSSTOG00000009090)	PCSK6 (ENSSTOG00000009068)	ENSSTOG00000031974	ENSSTOG00000009055	SELENOS (ENSSTOG00000009048)	CHSY1 (ENSSTOG00000009033)	ENSSTOG00000022852	LRRK1 (ENSSTOG00000008982)	ALDH1A3 (ENSSTOG00000008968)	ASB7 (ENSSTOG00000024134)	LINS1 (ENSSTOG00000004562)	CERS3 (ENSSTOG00000004541) ##22	ADAMTS17 (ENSSTOG00000004497)	LYSMD4 (ENSSTOG00000005427)	MEF2A (ENSSTOG00000028856)	LRRC28 (ENSSTOG00000004380)	TTC23 (ENSSTOG00000004362)	SYNM (ENSSTOG00000022419)	IGF1R (ENSSTOG00000011400)	ENSSTOG00000011427	ENSSTOG00000021739	ARRDC4 (ENSSTOG00000012169)	NR2F2 (ENSSTOG00000025965)	ENSSTOG00000022562	MCTP2 (ENSSTOG00000026484)	RGMA (ENSSTOG00000023280)	CHD2 (ENSSTOG00000001270)
Alpin marmot	MODERN SPECIES	33	APBA2 (ENSMMMG00000021344)	ENTREP2 (ENSMMMG00000021334)	TJP1 (ENSMMMG00000021295)	ENSMMMG00000021280	TARS3 (ENSMMMG00000021271)	TM2D3 (ENSMMMG00000021261)	PCSK6 (ENSMMMG00000021221)	SNRPA1 (ENSMMMG00000021206)	SELENOS (ENSMMMG00000021199)	CHSY1 (ENSMMMG00000021189)	LRRK1 (ENSMMMG00000021169)	ALDH1A3 (ENSMMMG00000021150)	ENSMMMG00000021145	ASB7 (ENSMMMG00000021137)	LINS1 (ENSMMMG00000021112)	CERS3 (ENSMMMG00000021095) ##22	ENSMMMG00000021070	ADAMTS17 (ENSMMMG00000021021)	ENSMMMG00000021014	LYSMD4 (ENSMMMG00000021007)	MEF2A (ENSMMMG00000020978)	LRRC28 (ENSMMMG00000020957)	TTC23 (ENSMMMG00000020943)	SYNM (ENSMMMG00000020891)	IGF1R (ENSMMMG00000020867)	ENSMMMG00000020860	ENSMMMG00000020824	ARRDC4 (ENSMMMG00000020820)	ENSMMMG00000020815	NR2F2 (ENSMMMG00000020806)	MCTP2 (ENSMMMG00000020783)
Eurasian red squirrel	MODERN SPECIES	11	ENSSVLG00005000860	TJP1 (ENSSVLG00005000933)	TARS3 (ENSSVLG00005001030)	TM2D3 (ENSSVLG00005001095)	PCSK6 (ENSSVLG00005001247)	SNRPA1 (ENSSVLG00005001365)	ENSSVLG00005001386	ENSSVLG00005001395	SELENOS (ENSSVLG00005001411)	CHSY1 (ENSSVLG00005001428)	LRRK1 (ENSSVLG00005001450)	ALDH1A3 (ENSSVLG00005001477)	ENSSVLG00005001507	ASB7 (ENSSVLG00005001524)	LINS1 (ENSSVLG00005001550)	CERS3 (ENSSVLG00005001575) ##22	ENSSVLG00005001603	ADAMTS17 (ENSSVLG00005001631)	LYSMD4 (ENSSVLG00005001675)	MEF2A (ENSSVLG00005001742)	ENSSVLG00005001869	ENSSVLG00005001915	TTC23 (ENSSVLG00005001983)	SYNM (ENSSVLG00005002041)	IGF1R (ENSSVLG00005002096)	ENSSVLG00005002151	ENSSVLG00005002216	NR2F2 (ENSSVLG00005002243)	ENSSVLG00005002275	RGMA (ENSSVLG00005002308)	CHD2 (ENSSVLG00005002368)
Hystricomorpha	ANCESTRAL SPECIES	40	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Hystricomorpha_a	ANCESTRAL SPECIES	25	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Hystricomorpha_b	ANCESTRAL SPECIES	20	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Long-tailed chinchilla	MODERN SPECIES	123	MPHOSPH10 (ENSCLAG00000012756)	MCEE (ENSCLAG00000011216)	APBA2 (ENSCLAG00000009202)	ENTREP2 (ENSCLAG00000012714)	TJP1 (ENSCLAG00000017350)	TARS3 (ENSCLAG00000016873)	TM2D3 (ENSCLAG00000012439)	PCSK6 (ENSCLAG00000013888)	SNRPA1 (ENSCLAG00000016402)	SELENOS (ENSCLAG00000014232)	CHSY1 (ENSCLAG00000010522)	LRRK1 (ENSCLAG00000015781)	ALDH1A3 (ENSCLAG00000010903)	ASB7 (ENSCLAG00000009854)	LINS1 (ENSCLAG00000010190)	CERS3 (ENSCLAG00000010671) ##22	ADAMTS17 (ENSCLAG00000011560)	LYSMD4 (ENSCLAG00000008806)	MEF2A (ENSCLAG00000010314)	ENSCLAG00000013280	LRRC28 (ENSCLAG00000010143)	TTC23 (ENSCLAG00000013426)	SYNM (ENSCLAG00000012214)	IGF1R (ENSCLAG00000012853)	PGPEP1L (ENSCLAG00000012011)	ENSCLAG00000008778	ARRDC4 (ENSCLAG00000009891)	NR2F2 (ENSCLAG00000010451)	MCTP2 (ENSCLAG00000014312)	RGMA (ENSCLAG00000012655)	CHD2 (ENSCLAG00000016269)
Degu	MODERN SPECIES	43	APBA2 (ENSODEG00000015323)	ENTREP2 (ENSODEG00000013447)	TJP1 (ENSODEG00000015556)	TARS3 (ENSODEG00000014454)	TM2D3 (ENSODEG00000014026)	PCSK6 (ENSODEG00000013651)	SNRPA1 (ENSODEG00000014103)	SELENOS (ENSODEG00000014112)	ENSODEG00000014481	ENSODEG00000014373	LRRK1 (ENSODEG00000014764)	ALDH1A3 (ENSODEG00000015012)	ASB7 (ENSODEG00000014474)	LINS1 (ENSODEG00000015320)	ENSODEG00000014357	CERS3 (ENSODEG00000014221) ##22	ADAMTS17 (ENSODEG00000014089)	LYSMD4 (ENSODEG00000014842)	MEF2A (ENSODEG00000014682)	ENSODEG00000014090	LRRC28 (ENSODEG00000015213)	TTC23 (ENSODEG00000014192)	SYNM (ENSODEG00000014754)	IGF1R (ENSODEG00000014019)	ENSODEG00000015288	ENSODEG00000014398	ENSODEG00000014516	ARRDC4 (ENSODEG00000014345)	ENSODEG00000014492	NR2F2 (ENSODEG00000014227)	MCTP2 (ENSODEG00000016400)
Naked mole-rat female	MODERN SPECIES	6	MCEE (ENSHGLG00000009474)	ENSHGLG00000010225	ENSHGLG00000010825	ENSHGLG00000011310	ENSHGLG00000011618	TM2D3 (ENSHGLG00000012566)	PCSK6 (ENSHGLG00000012908)	SNRPA1 (ENSHGLG00000012987)	VIMP (ENSHGLG00000013427)	ENSHGLG00000013695	LRRK1 (ENSHGLG00000013404)	ALDH1A3 (ENSHGLG00000013998)	ENSHGLG00000005801	ASB7 (ENSHGLG00000039786)	LINS (ENSHGLG00000034641)	CERS3 (ENSHGLG00000014885) ##22	ADAMTS17 (ENSHGLG00000014955)	ENSHGLG00000038548	ENSHGLG00000036552	MEF2A (ENSHGLG00000015444)	ENSHGLG00000039304	LRRC28 (ENSHGLG00000041379)	ENSHGLG00000041295	ENSHGLG00000018053	ENSHGLG00000015122	ENSHGLG00000039241	ENSHGLG00000047709	ENSHGLG00000015148	ENSHGLG00000015153	ENSHGLG00000048628	ENSHGLG00000034785
Rodentia_B	ANCESTRAL SPECIES	11	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Kangaroo rat	MODERN SPECIES	334	Apba2 (ENSDORG00000004960)	Nsmce3 (ENSDORG00000004984)	ENSDORG00000014998	Entrep2 (ENSDORG00000004962)	Tjp1 (ENSDORG00000013416)	Tarsl2 (ENSDORG00000009653)	Tm2d3 (ENSDORG00000009651)	Pcsk6 (ENSDORG00000000370)	Snrpa1 (ENSDORG00000000924)	Selenos (ENSDORG00000000922)	Chsy1 (ENSDORG00000000921)	Lrrk1 (ENSDORG00000012588)	Aldh1a3 (ENSDORG00000000437)	Asb7 (ENSDORG00000008451)	Lins1 (ENSDORG00000008450)	Cers3 (ENSDORG00000008447) ##22	Adamts17 (ENSDORG00000001554)	Lysmd4 (ENSDORG00000015221)	Mef2a (ENSDORG00000015216)	ENSDORG00000011292	Ttc23 (ENSDORG00000011289)	Synm (ENSDORG00000015364)	Igf1r (ENSDORG00000004530)	Pgpep1l (ENSDORG00000004531)	Fam169b (ENSDORG00000026590)	Arrdc4 (ENSDORG00000010971)	Nr2f2 (ENSDORG00000026489)	Mctp2 (ENSDORG00000011605)	Rgma (ENSDORG00000027417)	ENSDORG00000029445	ENSDORG00000029319
Myomorpha	ANCESTRAL SPECIES	13	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Lesser Egyptian jerboa	MODERN SPECIES	65	ENSJJAG00000009888	ENSJJAG00000020014	Mphosph10 (ENSJJAG00000015017)	Mcee (ENSJJAG00000019373)	ENSJJAG00000022341	Nsmce3 (ENSJJAG00000006681)	Tjp1 (ENSJJAG00000016703)	Tm2d3 (ENSJJAG00000010106)	Pcsk6 (ENSJJAG00000018978)	Snrpa1 (ENSJJAG00000002769)	ENSJJAG00000014263	Lrrk1 (ENSJJAG00000021788)	Aldh1a3 (ENSJJAG00000004688)	Asb7 (ENSJJAG00000004197)	Lins1 (ENSJJAG00000015527)	Cers3 (ENSJJAG00000000723) ##22	Adamts17 (ENSJJAG00000023730)	Mef2a (ENSJJAG00000002371)	Lrrc28 (ENSJJAG00000015208)	Ttc23 (ENSJJAG00000024024)	ENSJJAG00000015758	Igf1r (ENSJJAG00000012323)	Pgpep1l (ENSJJAG00000023509)	Fam169b (ENSJJAG00000010402)	ENSJJAG00000002911	Mctp2 (ENSJJAG00000014138)	Rgma (ENSJJAG00000021940)	Chd2 (ENSJJAG00000000213)	Fam174b (ENSJJAG00000000216)	St8sia2 (ENSJJAG00000012574)	Slco3a1 (ENSJJAG00000014694)
Muroidea	ANCESTRAL SPECIES	12	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Muroidea_A	ANCESTRAL SPECIES		ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343
Cricetidae	ANCESTRAL SPECIES	1	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Cricetinae	ANCESTRAL SPECIES	15	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000165193	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00860000135967	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Golden Hamster	MODERN SPECIES	1																Cers3 (ENSMAUG00000002994) ##22
Chinese hamster chok1gshd	MODERN SPECIES	101	Entrep2 (ENSCGRG00001021998)	Tjp1 (ENSCGRG00001006076)	ENSCGRG00001019466	Tarsl2 (ENSCGRG00001020827)	Tm2d3 (ENSCGRG00001000383)	ENSCGRG00001008890	Pcsk6 (ENSCGRG00001018811)	Snrpa1 (ENSCGRG00001008779)	Selenos (ENSCGRG00001011589)	Chsy1 (ENSCGRG00001021727)	Lrrk1 (ENSCGRG00001013893)	ENSCGRG00001008545	Aldh1a3 (ENSCGRG00001010590)	Asb7 (ENSCGRG00001013196)	Lins1 (ENSCGRG00001016676)	Cers3 (ENSCGRG00001019177) ##22	Adamts17 (ENSCGRG00001015416)	Lysmd4 (ENSCGRG00001023024)	Mef2a (ENSCGRG00001010696)	Lrrc28 (ENSCGRG00001005872)	Ttc23 (ENSCGRG00001014885)	Synm (ENSCGRG00001009711)	Igf1r (ENSCGRG00001024468)	Pgpep1l (ENSCGRG00001013682)	Fam169b (ENSCGRG00001013956)	Arrdc4 (ENSCGRG00001021034)	ENSCGRG00001022756	Nr2f2 (ENSCGRG00001011537)	ENSCGRG00001008245	Mctp2 (ENSCGRG00001021616)	ENSCGRG00001006608
Cricetidae_B	ANCESTRAL SPECIES	33	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Prairie vole	MODERN SPECIES	9	Apba2 (ENSMOCG00000014547)	ENSMOCG00000005919	Nsmce3 (ENSMOCG00000020910)	ENSMOCG00000009123	Tjp1 (ENSMOCG00000018692)	Tarsl2 (ENSMOCG00000014909)	Tm2d3 (ENSMOCG00000020623)	Pcsk6 (ENSMOCG00000003355)	Snrpa1 (ENSMOCG00000008501)	Selenos (ENSMOCG00000004767)	ENSMOCG00000022634	Lrrk1 (ENSMOCG00000004090)	Aldh1a3 (ENSMOCG00000002659)	Asb7 (ENSMOCG00000022928)	Lins1 (ENSMOCG00000020979)	Cers3 (ENSMOCG00000014900) ##22	Adamts17 (ENSMOCG00000020471)	Lysmd4 (ENSMOCG00000012052)	Mef2a (ENSMOCG00000020513)	Lrrc28 (ENSMOCG00000011205)	Ttc23 (ENSMOCG00000015902)	Synm (ENSMOCG00000013384)	Igf1r (ENSMOCG00000001481)	Fam169b (ENSMOCG00000012543)	Arrdc4 (ENSMOCG00000015443)	Nr2f2 (ENSMOCG00000017767)	Mctp2 (ENSMOCG00000006816)	Rgma (ENSMOCG00000020663)	Chd2 (ENSMOCG00000015124)	ENSMOCG00000008402	ENSMOCG00000019953
Northern American deer mouse	MODERN SPECIES		Mphosph10 (ENSPEMG00000019667)	Mcee (ENSPEMG00000013474)	Apba2 (ENSPEMG00000000431)	Entrep2 (ENSPEMG00000019895)	Tjp1 (ENSPEMG00000020140)	Tarsl2 (ENSPEMG00000019852)	Tm2d3 (ENSPEMG00000009183)	Pcsk6 (ENSPEMG00000019946)	ENSPEMG00000019673	Selenos (ENSPEMG00000019545)	Chsy1 (ENSPEMG00000019829)	Lrrk1 (ENSPEMG00000019367)	Aldh1a3 (ENSPEMG00000021611)	Asb7 (ENSPEMG00000022462)	Lins1 (ENSPEMG00000023050)	Cers3 (ENSPEMG00000023207) ##22	Adamts17 (ENSPEMG00000010644)	ENSPEMG00000000590	Mef2a (ENSPEMG00000031349)	Lrrc28 (ENSPEMG00000003238)	Ttc23 (ENSPEMG00000017817)	Synm (ENSPEMG00000012779)	Igf1r (ENSPEMG00000015935)	Pgpep1l (ENSPEMG00000013597)	ENSPEMG00000001646	ENSPEMG00000027311	Arrdc4 (ENSPEMG00000015729)	ENSPEMG00000000829	ENSPEMG00000012279	ENSPEMG00000025656	Mctp2 (ENSPEMG00000013075)
Murinae	ANCESTRAL SPECIES		ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343
Mus	ANCESTRAL SPECIES		ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000169314	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000169314	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00860000135967	ENSGT00940000156291	ENSGT00950000183112.a
Mus_B	ANCESTRAL SPECIES		ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000169314	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00860000135967	ENSGT00940000156291	ENSGT00950000183112.a
Mouse	MODERN SPECIES	16	Entrep2 (ENSMUSG00000030518)	Nsmce3 (ENSMUSG00000070520)	Tjp1 (ENSMUSG00000030516)	Tarsl2 (ENSMUSG00000030515)	Tm2d3 (ENSMUSG00000078681)	Pcsk6 (ENSMUSG00000030513)	Gm45213 (ENSMUSG00000108793)	Snrpa1 (ENSMUSG00000030512)	Selenos (ENSMUSG00000075701)	Chsy1 (ENSMUSG00000032640)	Lrrk1 (ENSMUSG00000015133)	Gm10974 (ENSMUSG00000078677)	Aldh1a3 (ENSMUSG00000015134)	Asb7 (ENSMUSG00000030509)	Lins1 (ENSMUSG00000053091)	Cers3 (ENSMUSG00000030510) ##22	Adamts17 (ENSMUSG00000058145)	Lysmd4 (ENSMUSG00000043831)	Mef2a (ENSMUSG00000030557)	Lrrc28 (ENSMUSG00000030556)	Ttc23 (ENSMUSG00000030555)	Synm (ENSMUSG00000030554)	Igf1r (ENSMUSG00000005533)	Pgpep1l (ENSMUSG00000030553)	Fam169b (ENSMUSG00000074071)	Arrdc4 (ENSMUSG00000042659)	Nr2f2 (ENSMUSG00000030551)	Mctp2 (ENSMUSG00000032776)	Rgma (ENSMUSG00000070509)	Chd2 (ENSMUSG00000078671)	Fam174b (ENSMUSG00000078670)
Mus_C	ANCESTRAL SPECIES	13	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627.d.a	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000169314	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000156153.r	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00860000135967	ENSGT00940000156291	ENSGT00950000183112.a
spretus	MODERN SPECIES	16	Apba2 (MGP_SPRETEiJ_G0030933)	Entrep2 (MGP_SPRETEiJ_G0030934)	Nsmce3 (MGP_SPRETEiJ_G0030935)	Tjp1 (MGP_SPRETEiJ_G0030936)	Tm2d3 (MGP_SPRETEiJ_G0030937)	Tarsl2 (MGP_SPRETEiJ_G0030938)	Pcsk6 (MGP_SPRETEiJ_G0030939)	MGP_SPRETEiJ_G0030940	Snrpa1 (MGP_SPRETEiJ_G0030941)	Selenos (MGP_SPRETEiJ_G0030942)	Chsy1 (MGP_SPRETEiJ_G0030943)	Lrrk1 (MGP_SPRETEiJ_G0030944)	Aldh1a3 (MGP_SPRETEiJ_G0030945)	Asb7 (MGP_SPRETEiJ_G0030946)	Lins1 (MGP_SPRETEiJ_G0030947)	Cers3 (MGP_SPRETEiJ_G0030948) ##22	Adamts17 (MGP_SPRETEiJ_G0030949)	Lysmd4 (MGP_SPRETEiJ_G0030950)	Mef2a (MGP_SPRETEiJ_G0030951)	Lrrc28 (MGP_SPRETEiJ_G0030952)	Ttc23 (MGP_SPRETEiJ_G0030953)	Synm (MGP_SPRETEiJ_G0030954)	Igf1r (MGP_SPRETEiJ_G0030955)	MGP_SPRETEiJ_G0030956	Arrdc4 (MGP_SPRETEiJ_G0030957)	Nr2f2 (MGP_SPRETEiJ_G0030958)	MGP_SPRETEiJ_G0030959	Mctp2 (MGP_SPRETEiJ_G0030960)	Rgma (MGP_SPRETEiJ_G0030961)	Chd2 (MGP_SPRETEiJ_G0030962)	Fam174b (MGP_SPRETEiJ_G0030963)
Steppe mouse	MODERN SPECIES	3311	Entrep2 (ENSMSIG00000021764)	Tjp1 (ENSMSIG00000021781)	ENSMSIG00000022163	Tarsl2 (ENSMSIG00000022170)	Tm2d3 (ENSMSIG00000022212)	ENSMSIG00000022279	ENSMSIG00000022283	Pcsk6 (ENSMSIG00000022295)	Snrpa1 (ENSMSIG00000022376)	Selenos (ENSMSIG00000022389)	Chsy1 (ENSMSIG00000022418)	Lrrk1 (ENSMSIG00000022433)	Aldh1a3 (ENSMSIG00000022507)	Asb7 (ENSMSIG00000022550)	Lins1 (ENSMSIG00000022573)	Cers3 (ENSMSIG00000022609) ##22	Adamts17 (ENSMSIG00000022658)
Ryukyu mouse	MODERN SPECIES	16	Apba2 (MGP_CAROLIEiJ_G0029830)	Entrep2 (MGP_CAROLIEiJ_G0029831)	Nsmce3 (MGP_CAROLIEiJ_G0029832)	MGP_CAROLIEiJ_G0029833	Tarsl2 (MGP_CAROLIEiJ_G0029834)	Tm2d3 (MGP_CAROLIEiJ_G0029835)	Pcsk6 (MGP_CAROLIEiJ_G0029836)	MGP_CAROLIEiJ_G0029837	Snrpa1 (MGP_CAROLIEiJ_G0029838)	Selenos (MGP_CAROLIEiJ_G0029839)	Chsy1 (MGP_CAROLIEiJ_G0029840)	Lrrk1 (MGP_CAROLIEiJ_G0029841)	Aldh1a3 (MGP_CAROLIEiJ_G0029842)	Asb7 (MGP_CAROLIEiJ_G0029843)	Lins1 (MGP_CAROLIEiJ_G0029844)	Cers3 (MGP_CAROLIEiJ_G0029845) ##22	Adamts17 (MGP_CAROLIEiJ_G0029846)	Lysmd4 (MGP_CAROLIEiJ_G0029847)	Mef2a (MGP_CAROLIEiJ_G0029848)	Lrrc28 (MGP_CAROLIEiJ_G0029849)	MGP_CAROLIEiJ_G0029850	Ttc23 (MGP_CAROLIEiJ_G0029851)	Synm (MGP_CAROLIEiJ_G0029852)	Igf1r (MGP_CAROLIEiJ_G0029853)	MGP_CAROLIEiJ_G0029854	Arrdc4 (MGP_CAROLIEiJ_G0029855)	Nr2f2 (MGP_CAROLIEiJ_G0029856)	MGP_CAROLIEiJ_G0029857	Mctp2 (MGP_CAROLIEiJ_G0029858)	Rgma (MGP_CAROLIEiJ_G0029859)	Chd2 (MGP_CAROLIEiJ_G0029860)
Shrew mouse	MODERN SPECIES		Apba2 (MGP_PahariEiJ_G0013055)	Entrep2 (MGP_PahariEiJ_G0013056)	Nsmce3 (MGP_PahariEiJ_G0013057)	Tjp1 (MGP_PahariEiJ_G0013058)	Tarsl2 (MGP_PahariEiJ_G0013059)	Tm2d3 (MGP_PahariEiJ_G0013060)	Pcsk6 (MGP_PahariEiJ_G0013061)	MGP_PahariEiJ_G0013062	Snrpa1 (MGP_PahariEiJ_G0013063)	Selenos (MGP_PahariEiJ_G0013064)	Chsy1 (MGP_PahariEiJ_G0013065)	Lrrk1 (MGP_PahariEiJ_G0013066)	Aldh1a3 (MGP_PahariEiJ_G0013067)	Asb7 (MGP_PahariEiJ_G0013068)	Lins1 (MGP_PahariEiJ_G0013069)	Cers3 (MGP_PahariEiJ_G0013070) ##22	Adamts17 (MGP_PahariEiJ_G0013071)	Lysmd4 (MGP_PahariEiJ_G0013072)	Mef2a (MGP_PahariEiJ_G0013073)	Lrrc28 (MGP_PahariEiJ_G0013074)	Ttc23 (MGP_PahariEiJ_G0013075)	Synm (MGP_PahariEiJ_G0013076)	Igf1r (MGP_PahariEiJ_G0013077)	Arrdc4 (MGP_PahariEiJ_G0013078)	Nr2f2 (MGP_PahariEiJ_G0013079)	Mctp2 (MGP_PahariEiJ_G0013080)	Rgma (MGP_PahariEiJ_G0013081)	Chd2 (MGP_PahariEiJ_G0013082)	Fam174b (MGP_PahariEiJ_G0013083)	St8sia2 (MGP_PahariEiJ_G0013084)	Slco3a1 (MGP_PahariEiJ_G0013085)
Rat	MODERN SPECIES		Entrep2 (ENSRNOG00000023496)	AABR07004112.1 (ENSRNOG00000016498)	Tjp1 (ENSRNOG00000011077)	Tars3 (ENSRNOG00000024460)	Tm2d3 (ENSRNOG00000011290)	AABR07004134.1 (ENSRNOG00000056928)	Pcsk6 (ENSRNOG00000011526)	ENSRNOG00000070428	Snrpa1 (ENSRNOG00000011932)	Selenos (ENSRNOG00000012576)	Chsy1 (ENSRNOG00000012698)	Lrrk1 (ENSRNOG00000012730)	Aldh1a3 (ENSRNOG00000052070)	Asb7 (ENSRNOG00000013795)	Lins1 (ENSRNOG00000042776)	Cers3 (ENSRNOG00000013823) ##22	Adamts17 (ENSRNOG00000037080)	Lysmd4 (ENSRNOG00000050624)	Mef2a (ENSRNOG00000047756)	Lrrc28 (ENSRNOG00000023274)	Ttc23 (ENSRNOG00000013877)	Synm (ENSRNOG00000014030)	LOC108349848 (ENSRNOG00000070349)	Igf1r (ENSRNOG00000014187)	Pgpep1l (ENSRNOG00000070202)	Fam169b (ENSRNOG00000022822)	LOC102551255 (ENSRNOG00000049257)	Arrdc4 (ENSRNOG00000010775)	ENSRNOG00000065206	Nr2f2 (ENSRNOG00000010308)	Mctp2 (ENSRNOG00000009932)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1493				Tjp1 (ENSNGAG00000020850)	ENSNGAG00000012775	Tarsl2 (ENSNGAG00000020451)	Tm2d3 (ENSNGAG00000021108)	Pcsk6 (ENSNGAG00000019875)	ENSNGAG00000018606	Selenos (ENSNGAG00000015323)	Chsy1 (ENSNGAG00000010613)	Lrrk1 (ENSNGAG00000003967)	Aldh1a3 (ENSNGAG00000017800)	Asb7 (ENSNGAG00000014776)	Lins1 (ENSNGAG00000013666)	Cers3 (ENSNGAG00000010966) ##22	Adamts17 (ENSNGAG00000014108)	Lysmd4 (ENSNGAG00000013974)	Mef2a (ENSNGAG00000000879)
Laurasiatheria	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00960000191040
Laurasiatheria_a	ANCESTRAL SPECIES	2	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00960000191040
Artiodactyla	ANCESTRAL SPECIES	3	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Suina	ANCESTRAL SPECIES	12	ENSGT00950000185118	ENSGT00940000163006	ENSGT00940000163084	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000154289.A.b	ENSGT00940000154209.a.a	ENSGT00390000009816	ENSGT00940000155312	ENSGT01090000260005.a.b.a.b.b	ENSGT00940000154710.b
Pig	MODERN SPECIES		NDN (ENSSSCG00000004834)	UBE3A (ENSSSCG00000004832)	ENSSSCG00000054906	ENSSSCG00000004830	ENSSSCG00000043519	GABRB3 (ENSSSCG00000038547)	GABRA5 (ENSSSCG00000004827)	GABRG3 (ENSSSCG00000035584)	SELENOS (ENSSSCG00000004826)	CHSY1 (ENSSSCG00000004825)	LRRK1 (ENSSSCG00000004823)	ALDH1A3 (ENSSSCG00000004822)	ENSSSCG00000038358	ASB7 (ENSSSCG00000004821)	LINS1 (ENSSSCG00000004820)	CERS3 (ENSSSCG00000004819) ##22	ENSSSCG00000056799	ADAMTS17 (ENSSSCG00000038452)	LYSMD4 (ENSSSCG00000030487)	MEF2A (ENSSSCG00000028771)	ENSSSCG00000004814	ENSSSCG00000056777	TTC23 (ENSSSCG00000004813)	ENSSSCG00000035223	ENSSSCG00000041479	IGF1R (ENSSSCG00000030560)	ENSSSCG00000004811	ENSSSCG00000027232	FMN1 (ENSSSCG00000044690)	GREM1 (ENSSSCG00000033657)	SCG5 (ENSSSCG00000004807)
Chacoan peccary	MODERN SPECIES	160					UBE3A (ENSCWAG00000008186)	ATP10A (ENSCWAG00000008228)	GABRB3 (ENSCWAG00000008459)	GABRA5 (ENSCWAG00000008932)	GABRG3 (ENSCWAG00000009036)	SELENOS (ENSCWAG00000009194)	CHSY1 (ENSCWAG00000009271)	LRRK1 (ENSCWAG00000009332)	ALDH1A3 (ENSCWAG00000009539)	ASB7 (ENSCWAG00000009674)	ENSCWAG00000009711	CERS3 (ENSCWAG00000009754) ##22	ADAMTS17 (ENSCWAG00000009807)	LYSMD4 (ENSCWAG00000009871)	MEF2A (ENSCWAG00000009911)
Artiodactyla_a	ANCESTRAL SPECIES	2	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Artiodactyla_b	ANCESTRAL SPECIES	2	ENSGT00390000009320	ENSGT00940000164524	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Cetacea	ANCESTRAL SPECIES	2	ENSGT00940000163006	ENSGT00940000163084	ENSGT00390000009320.ab.a	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f.a	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Odontoceti	ANCESTRAL SPECIES	2	ENSGT00940000163006	ENSGT00940000163084	ENSGT00390000009320.ab.a.a	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f.a	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00490000044635	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Odontoceti_a	ANCESTRAL SPECIES	2	ENSGT00940000163006	ENSGT00940000163084	ENSGT00390000009320.ab.a.a	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f.a	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00490000044635	ENSGT00940000157540.A	ENSGT00940000155338.a	ENSGT00940000156291	ENSGT00950000183112.a
Dolphin	MODERN SPECIES	5412														ASB7 (ENSTTRG00000000296)	LINS1 (ENSTTRG00000000297)	CERS3 (ENSTTRG00000000298) ##22
Odontoceti_b	ANCESTRAL SPECIES	2	ENSGT00940000163006	ENSGT00940000163084	ENSGT00390000009320.ab.a.a	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f.a	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000174256	ENSGT00900000143321	ENSGT00940000157540.A	ENSGT00940000155338.a	ENSGT00940000156291
Monodontidae	ANCESTRAL SPECIES	22			ENSGT00390000009320.ab.a.a	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f.a	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000174256	ENSGT00900000143321	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00940000155909.i
Narwhal	MODERN SPECIES	308	ENSMMNG00015011691	ENSMMNG00015011671	SNRPN (ENSMMNG00015011647)	UBE3A (ENSMMNG00015011456)	ENSMMNG00015011428	ENSMMNG00015011410	GABRB3 (ENSMMNG00015011375)	ENSMMNG00015011346	GABRG3 (ENSMMNG00015011324)	SELENOS (ENSMMNG00015011300)	CHSY1 (ENSMMNG00015011277)	LRRK1 (ENSMMNG00015011239)	ALDH1A3 (ENSMMNG00015011205)	ASB7 (ENSMMNG00015011178)	LINS1 (ENSMMNG00015011141)	CERS3 (ENSMMNG00015011108) ##22	ADAMTS17 (ENSMMNG00015011079)	LYSMD4 (ENSMMNG00015011058)	MEF2A (ENSMMNG00015011012)	LRRC28 (ENSMMNG00015010990)	TTC23 (ENSMMNG00015010960)	SYNM (ENSMMNG00015010915)	IGF1R (ENSMMNG00015010863)	ENSMMNG00015010840	ENSMMNG00015010816	ARRDC4 (ENSMMNG00015010758)	ENSMMNG00015010739	ENSMMNG00015010730	NR2F2 (ENSMMNG00015010693)	ENSMMNG00015010668	MCTP2 (ENSMMNG00015010543)
Beluga whale	MODERN SPECIES	52			ENSDLEG00000014207	SNRPN (ENSDLEG00000014174)	UBE3A (ENSDLEG00000007113)	ATP10A (ENSDLEG00000007092)	GABRB3 (ENSDLEG00000007078)	GABRA5 (ENSDLEG00000007067)	GABRG3 (ENSDLEG00000007042)	SELENOS (ENSDLEG00000007037)	CHSY1 (ENSDLEG00000007027)	LRRK1 (ENSDLEG00000007002)	ALDH1A3 (ENSDLEG00000006994)	ASB7 (ENSDLEG00000006990)	LINS1 (ENSDLEG00000006980)	CERS3 (ENSDLEG00000006971) ##22	ADAMTS17 (ENSDLEG00000006922)	LYSMD4 (ENSDLEG00000006906)	MEF2A (ENSDLEG00000006900)	LRRC28 (ENSDLEG00000006888)	TTC23 (ENSDLEG00000006882)	SYNM (ENSDLEG00000006876)	IGF1R (ENSDLEG00000006865)	ENSDLEG00000006861	ENSDLEG00000006848	ARRDC4 (ENSDLEG00000006837)	ENSDLEG00000006833	ENSDLEG00000006828	NR2F2 (ENSDLEG00000006824)	MCTP2 (ENSDLEG00000006742)	ENSDLEG00000006716
Vaquita	MODERN SPECIES	11	MAGEL2 (ENSPSNG00000008680)	NDN (ENSPSNG00000008660)	ENSPSNG00000008608	SNRPN (ENSPSNG00000008506)	UBE3A (ENSPSNG00000008097)	ATP10A (ENSPSNG00000008042)	GABRB3 (ENSPSNG00000007853)	ENSPSNG00000007765	GABRG3 (ENSPSNG00000007646)	SELENOS (ENSPSNG00000007584)	CHSY1 (ENSPSNG00000007562)	LRRK1 (ENSPSNG00000007511)	ALDH1A3 (ENSPSNG00000007352)	ASB7 (ENSPSNG00000007278)	LINS1 (ENSPSNG00000007209)	CERS3 (ENSPSNG00000007138) ##22	ADAMTS17 (ENSPSNG00000007060)	LYSMD4 (ENSPSNG00000007014)	MEF2A (ENSPSNG00000006923)	LRRC28 (ENSPSNG00000006850)	TTC23 (ENSPSNG00000006787)	SYNM (ENSPSNG00000006738)	IGF1R (ENSPSNG00000006634)	ENSPSNG00000006559	ENSPSNG00000006523	ARRDC4 (ENSPSNG00000006485)	ENSPSNG00000006439	ENSPSNG00000006420	NR2F2 (ENSPSNG00000006377)	ENSPSNG00000004222	MCTP2 (ENSPSNG00000004190)
Sperm whale	MODERN SPECIES	2	NDN (ENSPCTG00005008795)	SNURF (ENSPCTG00005008825)	SNRPN (ENSPCTG00005008845)	UBE3A (ENSPCTG00005009396)	ATP10A (ENSPCTG00005009469)	GABRB3 (ENSPCTG00005009807)	GABRA5 (ENSPCTG00005010049)	GABRG3 (ENSPCTG00005010080)	SELENOS (ENSPCTG00005010343)	CHSY1 (ENSPCTG00005010429)	ENSPCTG00005010476	LRRK1 (ENSPCTG00005010536)	ALDH1A3 (ENSPCTG00005010651)	ASB7 (ENSPCTG00005010877)	LINS1 (ENSPCTG00005010944)	CERS3 (ENSPCTG00005011060) ##22	ADAMTS17 (ENSPCTG00005011170)	LYSMD4 (ENSPCTG00005011348)	MEF2A (ENSPCTG00005011471)	LRRC28 (ENSPCTG00005011551)	TTC23 (ENSPCTG00005011662)	SYNM (ENSPCTG00005011737)	IGF1R (ENSPCTG00005011814)	ENSPCTG00005011890	ENSPCTG00005011931	ARRDC4 (ENSPCTG00005011970)	NR2F2 (ENSPCTG00005012099)	ENSPCTG00005012170	MCTP2 (ENSPCTG00005012205)	ENSPCTG00005012340	ENSPCTG00005012383
Blue whale	MODERN SPECIES	11	SNRPN (ENSBMSG00010008520)	UBE3A (ENSBMSG00010008323)	ATP10A (ENSBMSG00010008266)	ENSBMSG00010008236	ENSBMSG00010008226	GABRB3 (ENSBMSG00010008145)	ENSBMSG00010008110	GABRG3 (ENSBMSG00010008082)	SELENOS (ENSBMSG00010008057)	CHSY1 (ENSBMSG00010008026)	LRRK1 (ENSBMSG00010007999)	ALDH1A3 (ENSBMSG00010007886)	ENSBMSG00010007868	ASB7 (ENSBMSG00010007863)	LINS1 (ENSBMSG00010007852)	CERS3 (ENSBMSG00010007841) ##22	ADAMTS17 (ENSBMSG00010007680)	LYSMD4 (ENSBMSG00010007634)	ENSBMSG00010007622	MEF2A (ENSBMSG00010007583)	LRRC28 (ENSBMSG00010007523)	TTC23 (ENSBMSG00010007472)	SYNM (ENSBMSG00010007452)	IGF1R (ENSBMSG00010007366)	ENSBMSG00010007338	ENSBMSG00010007279	ENSBMSG00010007241	NR2F2 (ENSBMSG00010007223)	ENSBMSG00010007193	MCTP2 (ENSBMSG00010007150)	RGMA (ENSBMSG00010007129)
Pecora	ANCESTRAL SPECIES	18	ENSGT00940000164524	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT01100000263481.n.a.b.b	ENSGT00390000018141.i.a.b.b.b.b	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Percora_a	ANCESTRAL SPECIES	20	ENSGT00940000164524	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT01100000263481.n.a.b.b	ENSGT00390000018141.i.a.b.b.b.b	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000153342.b.j	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Bovidae	ANCESTRAL SPECIES	20	ENSGT00940000164524	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT01100000263481.n.a.b.b	ENSGT00390000018141.i.a.b.b.b.b	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000153342.b.j	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Caprinae	ANCESTRAL SPECIES	22	ENSGT00940000158222	ENSGT00390000009320.y	ENSGT00940000164524	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000015688.a	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771.h	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000153342.b.j	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Goat	MODERN SPECIES	13	UBE3A (ENSCHIG00000017576)	ENSCHIG00000017789	ATP10A (ENSCHIG00000007182)	ENSCHIG00000022386	GABRB3 (ENSCHIG00000021468)	GABRA5 (ENSCHIG00000023746)	ENSCHIG00000014564	GABRG3 (ENSCHIG00000024578)	ENSCHIG00000023151	ENSCHIG00000023492	CHSY1 (ENSCHIG00000026238)	LRRK1 (ENSCHIG00000024029)	ALDH1A3 (ENSCHIG00000020729)	ASB7 (ENSCHIG00000009823)	LINS1 (ENSCHIG00000009033)	CERS3 (ENSCHIG00000025546) ##22	ADAMTS17 (ENSCHIG00000016863)	LYSMD4 (ENSCHIG00000018838)	MEF2A (ENSCHIG00000024497)	ENSCHIG00000010197	TTC23 (ENSCHIG00000014563)	SYNM (ENSCHIG00000016711)	IGF1R (ENSCHIG00000023990)	ENSCHIG00000022156	ENSCHIG00000016623	ENSCHIG00000011322	ARRDC4 (ENSCHIG00000021973)	ENSCHIG00000006032	NR2F2 (ENSCHIG00000023141)	MCTP2 (ENSCHIG00000024924)	RGMA (ENSCHIG00000014333)
Rambouillet Sheep	MODERN SPECIES	9	SNURF (ENSOARG00020008154)	UBE3A (ENSOARG00020003405)	ATP10A (ENSOARG00020003485)	RPS25 (ENSOARG00020003579)	ENSOARG00020003603	GABRB3 (ENSOARG00020003644)	GABRA5 (ENSOARG00020003769)	GABRG3 (ENSOARG00020003804)	ENSOARG00020003880	ENSOARG00020003892	ENSOARG00020003929	LRRK1 (ENSOARG00020003980)	ALDH1A3 (ENSOARG00020004379)	ENSOARG00020004515	ASB7 (ENSOARG00020004526)	CERS3 (ENSOARG00020004593) ##22	ADAMTS17 (ENSOARG00020004620)	LYSMD4 (ENSOARG00020004742)	MEF2A (ENSOARG00020004819)	ENSOARG00020004927	TTC23 (ENSOARG00020005052)	SYNM (ENSOARG00020005117)	IGF1R (ENSOARG00020005176)	ARRDC4 (ENSOARG00020005803)	ENSOARG00020005858	ENSOARG00020005874	NR2F2 (ENSOARG00020005894)	ENSOARG00020005988	ENSOARG00020006012	MCTP2 (ENSOARG00020006028)	RGMA (ENSOARG00020006145)
Bovinae	ANCESTRAL SPECIES	45	ENSGT00390000009320.y	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000009588.pb.a.a.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00940000154451.l.b.b.a.b
Bos	ANCESTRAL SPECIES	18	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000009588.pb.a.a.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.a.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00950000183841.a	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.d	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00390000007133.ib.a.b	ENSGT00950000183112.a
Bos_a	ANCESTRAL SPECIES	79	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.e.b	ENSGT00940000156234.f	ENSGT00940000156234.e.a	ENSGT00940000155607	ENSGT00390000009588.pb.a.a.b.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00950000183841.a	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.d	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00390000007133.ib.a.b	ENSGT00950000183112.a
Wild yak	MODERN SPECIES	190											LRRK1 (ENSBMUG00000001421)	ALDH1A3 (ENSBMUG00000001380)	ENSBMUG00000001286	ASB7 (ENSBMUG00000001278)	LINS1 (ENSBMUG00000001267)	CERS3 (ENSBMUG00000001247) ##22	ENSBMUG00000001223	ADAMTS17 (ENSBMUG00000001197)
Domestic yak	MODERN SPECIES	8	ATP10A (ENSBGRG00000003850)	ENSBGRG00000003908	GABRB3 (ENSBGRG00000003940)	ENSBGRG00000004040	GABRA5 (ENSBGRG00000004069)	GABRG3 (ENSBGRG00000004154)	ENSBGRG00000004250	ENSBGRG00000004294	SELENOS (ENSBGRG00000004321)	CHSY1 (ENSBGRG00000004426)	LRRK1 (ENSBGRG00000004461)	ALDH1A3 (ENSBGRG00000004521)	ENSBGRG00000004632	ASB7 (ENSBGRG00000004639)	LINS1 (ENSBGRG00000004716)	CERS3 (ENSBGRG00000004770) ##22	ADAMTS17 (ENSBGRG00000004987)	LYSMD4 (ENSBGRG00000005456)	MEF2A (ENSBGRG00000005494)	LRRC28 (ENSBGRG00000005615)	TTC23 (ENSBGRG00000005798)	SYNM (ENSBGRG00000005981)	IGF1R (ENSBGRG00000006060)	ENSBGRG00000006259	ENSBGRG00000006286	ENSBGRG00000006316	ARRDC4 (ENSBGRG00000006339)	NR2F2 (ENSBGRG00000006400)	ENSBGRG00000006472	ENSBGRG00000006524	ENSBGRG00000006535
Bos_b	ANCESTRAL SPECIES	44	ENSGT00940000158222	ENSGT00940000155050	ENSGT00940000157895	ENSGT00940000154713.A	ENSGT00940000156234.f	ENSGT00940000155607	ENSGT00390000009588.pb.a.a.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT01100000263481.n.a.b.b.a.b.b.a.a.a.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00900000143686	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00950000183841.a	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.d	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00390000007133.ib.a.b	ENSGT00950000183112.a
Cow	MODERN SPECIES	13	UBE3A (ENSBTAG00000002487)	ATP10A (ENSBTAG00000027081)	GABRB3 (ENSBTAG00000013422)	GABRA5 (ENSBTAG00000003392)	ENSBTAG00000051536	ENSBTAG00000035184	GABRG3 (ENSBTAG00000052298)	ENSBTAG00000034398	SELENOS (ENSBTAG00000000640)	CHSY1 (ENSBTAG00000007357)	LRRK1 (ENSBTAG00000001567)	ALDH1A3 (ENSBTAG00000009125)	ENSBTAG00000048684	ASB7 (ENSBTAG00000010514)	LINS1 (ENSBTAG00000016495)	CERS3 (ENSBTAG00000006987) ##22	ENSBTAG00000049667	ADAMTS17 (ENSBTAG00000019823)	LYSMD4 (ENSBTAG00000010192)	MEF2A (ENSBTAG00000010649)	LRRC28 (ENSBTAG00000000539)	TTC23 (ENSBTAG00000011185)	SYNM (ENSBTAG00000011752)	IGF1R (ENSBTAG00000021527)	PGPEP1L (ENSBTAG00000021531)	ENSBTAG00000020514	ARRDC4 (ENSBTAG00000018252)	NR2F2 (ENSBTAG00000018007)	MCTP2 (ENSBTAG00000013689)	ENSBTAG00000033335	ENSBTAG00000027075
Hybrid Bos Indicus	MODERN SPECIES	13	ENSBIXG00005025106	GABRB3 (ENSBIXG00005025037)	ENSBIXG00005024946	GABRA5 (ENSBIXG00005024931)	GABRG3 (ENSBIXG00005004245)	ENSBIXG00005024736	SELENOS (ENSBIXG00005024692)	CHSY1 (ENSBIXG00005024627)	ENSBIXG00005006488	LRRK1 (ENSBIXG00005006062)	ALDH1A3 (ENSBIXG00005024423)	ENSBIXG00005024290	ASB7 (ENSBIXG00005024255)	LINS1 (ENSBIXG00005006486)	ENSBIXG00005024210	CERS3 (ENSBIXG00005024198) ##22	ENSBIXG00005024158	ADAMTS17 (ENSBIXG00005024103)	LYSMD4 (ENSBIXG00005023954)	MEF2A (ENSBIXG00005023860)	LRRC28 (ENSBIXG00005023571)	TTC23 (ENSBIXG00005023444)	SYNM (ENSBIXG00005003996)	IGF1R (ENSBIXG00005023256)	ENSBIXG00005023207	ENSBIXG00005003959	ARRDC4 (ENSBIXG00005006000)	NR2F2 (ENSBIXG00005003928)	ENSBIXG00005022923	MCTP2 (ENSBIXG00005022868)	ENSBIXG00005007765
American bison	MODERN SPECIES	3141	ENSBBBG00000009724	ATP10A (ENSBBBG00000009719)	GABRB3 (ENSBBBG00000009697)	GABRA5 (ENSBBBG00000009693)	ENSBBBG00000009690	ENSBBBG00000001576	GABRG3 (ENSBBBG00000009677)	ENSBBBG00000009671	SELENOS (ENSBBBG00000025499)	CHSY1 (ENSBBBG00000025389)	LRRK1 (ENSBBBG00000025376)	ALDH1A3 (ENSBBBG00000007771)	ENSBBBG00000025129	ASB7 (ENSBBBG00000006653)	LINS1 (ENSBBBG00000025096)	CERS3 (ENSBBBG00000008075) ##22	ADAMTS17 (ENSBBBG00000025028)	LYSMD4 (ENSBBBG00000024984)	MEF2A (ENSBBBG00000024972)	LRRC28 (ENSBBBG00000024946)	TTC23 (ENSBBBG00000024916)	ENSBBBG00000006816	IGF1R (ENSBBBG00000006525)	ENSBBBG00000006470	ENSBBBG00000006456	ARRDC4 (ENSBBBG00000006433)
Siberian musk deer	MODERN SPECIES	1279										CHSY1 (ENSMMSG00000014585)	LRRK1 (ENSMMSG00000014530)	ALDH1A3 (ENSMMSG00000014488)	ENSMMSG00000014474	ASB7 (ENSMMSG00000014449)	LINS1 (ENSMMSG00000014428)	CERS3 (ENSMMSG00000014392) ##22	ADAMTS17 (ENSMMSG00000014339)	LYSMD4 (ENSMMSG00000014321)	ENSMMSG00000014308	MEF2A (ENSMMSG00000014165)	LRRC28 (ENSMMSG00000014116)	TTC23 (ENSMMSG00000014084)	ENSMMSG00000014069	ENSMMSG00000014049	IGF1R (ENSMMSG00000014002)	ENSMMSG00000013975	ENSMMSG00000013884	ARRDC4 (ENSMMSG00000013851)	ENSMMSG00000013831	NR2F2 (ENSMMSG00000013806)
Yarkand deer	MODERN SPECIES	4	UBE3A (ENSCHYG00000005478)	ENSCHYG00000005530	ENSCHYG00000005590	ENSCHYG00000005608	GABRB3 (ENSCHYG00000005619)	ENSCHYG00000005633	GABRA5 (ENSCHYG00000005654)	GABRG3 (ENSCHYG00000005703)	SELENOS (ENSCHYG00000005762)	CHSY1 (ENSCHYG00000005857)	LRRK1 (ENSCHYG00000005930)	ALDH1A3 (ENSCHYG00000006301)	ENSCHYG00000006386	ASB7 (ENSCHYG00000006398)	LINS1 (ENSCHYG00000006425)	CERS3 (ENSCHYG00000006461) ##22	ADAMTS17 (ENSCHYG00000006512)	ENSCHYG00000006649	MEF2A (ENSCHYG00000006733)	LRRC28 (ENSCHYG00000006817)	TTC23 (ENSCHYG00000006873)	SYNM (ENSCHYG00000006912)	IGF1R (ENSCHYG00000006955)	ENSCHYG00000007085	ENSCHYG00000007128	ARRDC4 (ENSCHYG00000007186)	ENSCHYG00000007241	ENSCHYG00000007264	ENSCHYG00000007283	ENSCHYG00000007293	MCTP2 (ENSCHYG00000007330)
Camelidae	ANCESTRAL SPECIES	21	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Arabian camel	MODERN SPECIES	19	MCEE (ENSCDRG00005004885)	APBA2 (ENSCDRG00005004934)	ENTREP2 (ENSCDRG00005005159)	TJP1 (ENSCDRG00005005213)	TARS3 (ENSCDRG00005005662)	TM2D3 (ENSCDRG00005017633)	PCSK6 (ENSCDRG00005017712)	SNRPA1 (ENSCDRG00005017916)	ENSCDRG00005017960	CHSY1 (ENSCDRG00005018015)	LRRK1 (ENSCDRG00005018052)	ALDH1A3 (ENSCDRG00005018258)	ASB7 (ENSCDRG00005018331)	ENSCDRG00005018378	ENSCDRG00005018433	CERS3 (ENSCDRG00005018454) ##22	ADAMTS17 (ENSCDRG00005018609)	LYSMD4 (ENSCDRG00005019481)	MEF2A (ENSCDRG00005019509)	LRRC28 (ENSCDRG00005019671)	TTC23 (ENSCDRG00005019711)	ENSCDRG00005019723	IGF1R (ENSCDRG00005019740)	PGPEP1L (ENSCDRG00005019859)	ARRDC4 (ENSCDRG00005019889)	NR2F2 (ENSCDRG00005019929)	MCTP2 (ENSCDRG00005019963)	RGMA (ENSCDRG00005020035)	CHD2 (ENSCDRG00005020100)	FAM174B (ENSCDRG00005020166)	ST8SIA2 (ENSCDRG00005020171)
Alpaca	MODERN SPECIES	762																CERS3 (ENSVPAG00000004939) ##22	ENSVPAG00000004938
Laurasiatheria_b	ANCESTRAL SPECIES	3	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00930000152882
Carnivora	ANCESTRAL SPECIES		ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00960000191040
Caniformia	ANCESTRAL SPECIES	12	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Caniformia_b	ANCESTRAL SPECIES	15	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Ursidae	ANCESTRAL SPECIES	40	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT01090000261322	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Ursus	ANCESTRAL SPECIES	161					ENSGT01090000261322	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888.g	ENSGT00730000111392
Polar bear	MODERN SPECIES	143	APBA2 (ENSUMAG00000023494)	ENSUMAG00000023529	ENSUMAG00000023535	TJP1 (ENSUMAG00000023575)	ENSUMAG00000024350	TARS3 (ENSUMAG00000024371)	TM2D3 (ENSUMAG00000024478)	PCSK6 (ENSUMAG00000024481)	SNRPA1 (ENSUMAG00000024485)	SELENOS (ENSUMAG00000024486)	CHSY1 (ENSUMAG00000024487)	LRRK1 (ENSUMAG00000024490)	ALDH1A3 (ENSUMAG00000024498)	ASB7 (ENSUMAG00000025076)	LINS1 (ENSUMAG00000025077)	CERS3 (ENSUMAG00000025078) ##22	ADAMTS17 (ENSUMAG00000025080)	LYSMD4 (ENSUMAG00000025081)	MEF2A (ENSUMAG00000025083)	LRRC28 (ENSUMAG00000025084)	TTC23 (ENSUMAG00000025085)	ENSUMAG00000025086	IGF1R (ENSUMAG00000025099)	ENSUMAG00000025378	ENSUMAG00000025379	ARRDC4 (ENSUMAG00000025384)	ENSUMAG00000025389	MCTP2 (ENSUMAG00000025392)	RGMA (ENSUMAG00000025394)	CHD2 (ENSUMAG00000000083)	ENSUMAG00000000175
American black bear	MODERN SPECIES	3128														ASB7 (ENSUAMG00000016750)	LINS1 (ENSUAMG00000016743)	CERS3 (ENSUAMG00000016736) ##22
Giant Panda	MODERN SPECIES	19	ENSAMEG00000015316	ENSAMEG00000015319	ENSAMEG00000003123	ENSAMEG00000024112	ENSAMEG00000003074	TM2D3 (ENSAMEG00000003063)	PCSK6 (ENSAMEG00000003004)	ENSAMEG00000007128	SELENOS (ENSAMEG00000007115)	CHSY1 (ENSAMEG00000014296)	LRRK1 (ENSAMEG00000014302)	ALDH1A3 (ENSAMEG00000014337)	ENSAMEG00000026618	ASB7 (ENSAMEG00000014437)	LINS1 (ENSAMEG00000014445)	CERS3 (ENSAMEG00000014447) ##22	ADAMTS17 (ENSAMEG00000014487)	LYSMD4 (ENSAMEG00000029222)	MEF2A (ENSAMEG00000003398)	LRRC28 (ENSAMEG00000005543)	ENSAMEG00000005555	ENSAMEG00000005568	ENSAMEG00000005572	ENSAMEG00000005705	ENSAMEG00000005707	ENSAMEG00000012316	ENSAMEG00000031190	MCTP2 (ENSAMEG00000015858)	RGMA (ENSAMEG00000008809)	CHD2 (ENSAMEG00000010805)	FAM174B (ENSAMEG00000026861)
Mustelinae	ANCESTRAL SPECIES	36	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363.b	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Ferret	MODERN SPECIES	235	ENTREP2 (ENSMPUG00000011061)	TJP1 (ENSMPUG00000011043)	TARS3 (ENSMPUG00000011032)	TM2D3 (ENSMPUG00000010985)	PCSK6 (ENSMPUG00000010974)	SNRPA1 (ENSMPUG00000010938)	SELENOS (ENSMPUG00000010935)	CHSY1 (ENSMPUG00000010931)	ENSMPUG00000010926	ENSMPUG00000010925	ENSMPUG00000010924	ENSMPUG00000010919	ALDH1A3 (ENSMPUG00000010914)	ASB7 (ENSMPUG00000010907)	LINS1 (ENSMPUG00000010901)	CERS3 (ENSMPUG00000010895) ##22	ENSMPUG00000010893	ADAMTS17 (ENSMPUG00000010864)	LYSMD4 (ENSMPUG00000010862)	ENSMPUG00000010826	LRRC28 (ENSMPUG00000010802)	ENSMPUG00000010798	TTC23 (ENSMPUG00000010767)	ENSMPUG00000010763	ENSMPUG00000010758	IGF1R (ENSMPUG00000010753)	ENSMPUG00000010734	ENSMPUG00000010726	ARRDC4 (ENSMPUG00000010684)	NR2F2 (ENSMPUG00000010683)	ENSMPUG00000010681
American mink	MODERN SPECIES	134	MPP10 (ENSNVIG00000005923)	MCEE (ENSNVIG00000005968)	APBA2 (ENSNVIG00000005991)	ENTREP2 (ENSNVIG00000006142)	TJP1 (ENSNVIG00000006179)	TARS3 (ENSNVIG00000006378)	TM2D3 (ENSNVIG00000006409)	PCSK6 (ENSNVIG00000006442)	SNRPA1 (ENSNVIG00000006530)	SELENOS (ENSNVIG00000006582)	CHSY1 (ENSNVIG00000006623)	LRRK1 (ENSNVIG00000006642)	ALDH1A3 (ENSNVIG00000006746)	ASB7 (ENSNVIG00000006801)	LINS1 (ENSNVIG00000006824)	CERS3 (ENSNVIG00000006870) ##22	ADAMTS17 (ENSNVIG00000006898)	LYSM4 (ENSNVIG00000006927)	MEF2A (ENSNVIG00000006952)	LRRC28 (ENSNVIG00000007079)
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.eb	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790.k	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00960000191040
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00940000153941.a.a	ENSGT00940000153288.a.b.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.eb	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790.k	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT01090000260046.e.b.b.a.b.a.a.b.a.a.a.b.b.b	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.k.a	ENSGT00940000153533.a.m.b.a	ENSGT00940000156291	ENSGT00950000183112.a
Dingo	MODERN SPECIES	138	ENSCAFG00020023827	ENTREP2 (ENSCAFG00020023826)	ENSCAFG00020023821	TJP1 (ENSCAFG00020021329)	TARS3 (ENSCAFG00020020868)	TM2D3 (ENSCAFG00020020812)	PCSK6 (ENSCAFG00020020483)	ENSCAFG00020020462	SELENOS (ENSCAFG00020020453)	ENSCAFG00020020451	CHSY1 (ENSCAFG00020020449)	LRRK1 (ENSCAFG00020020272)	ALDH1A3 (ENSCAFG00020020018)	ASB7 (ENSCAFG00020019968)	LINS1 (ENSCAFG00020019963)	CERS3 (ENSCAFG00020019956) ##22	ADAMTS17 (ENSCAFG00020019920)	LYSMD4 (ENSCAFG00020019914)	MEF2A (ENSCAFG00020019905)	ENSCAFG00020019892	LRRC28 (ENSCAFG00020019891)	TTC23 (ENSCAFG00020019860)	ENSCAFG00020019857	ENSCAFG00020019844	IGF1R (ENSCAFG00020019842)	ENSCAFG00020019822	ENSCAFG00020019802	ARRDC4 (ENSCAFG00020019786)	ENSCAFG00020019754	ENSCAFG00020019734	MCTP2 (ENSCAFG00020019712)
Dog	MODERN SPECIES	22	ENSCAFG00845000242	ENSCAFG00845000277	TJP1 (ENSCAFG00845000384)	ENSCAFG00845000546	TM2D3 (ENSCAFG00845000657)	PCSK6 (ENSCAFG00845000759)	ENSCAFG00845000855	ENSCAFG00845000873	SELENOS (ENSCAFG00845000893)	CHSY1 (ENSCAFG00845000910)	ENSCAFG00845000925	LRRK1 (ENSCAFG00845000977)	ALDH1A3 (ENSCAFG00845001112)	ASB7 (ENSCAFG00845001149)	LINS1 (ENSCAFG00845001173)	CERS3 (ENSCAFG00845001223) ##22	ADAMTS17 (ENSCAFG00845001303)	LYSMD4 (ENSCAFG00845001356)	MEF2A (ENSCAFG00845001432)	ENSCAFG00845001496	ENSCAFG00845001584	TTC23 (ENSCAFG00845001619)	ENSCAFG00845001675	IGF1R (ENSCAFG00845001742)	ENSCAFG00845001843	FAM169B (ENSCAFG00845001867)	ENSCAFG00845001895	ENSCAFG00845001937	NR2F2 (ENSCAFG00845002076)	ENSCAFG00845002137	MCTP2 (ENSCAFG00845002206)
Red fox	MODERN SPECIES	1		ENSVVUG00000019932	APBA2 (ENSVVUG00000019909)	ENTREP2 (ENSVVUG00000019897)	TJP1 (ENSVVUG00000019842)	TARS3 (ENSVVUG00000014742)	TM2D3 (ENSVVUG00000014697)	PCSK6 (ENSVVUG00000014669)	SNRPA1 (ENSVVUG00000014562)	SELENOS (ENSVVUG00000014525)	CHSY1 (ENSVVUG00000014518)	LRRK1 (ENSVVUG00000014496)	ALDH1A3 (ENSVVUG00000014482)	ASB7 (ENSVVUG00000014453)	ENSVVUG00000014447	CERS3 (ENSVVUG00000014395) ##22	ADAMTS17 (ENSVVUG00000014291)	LYSMD4 (ENSVVUG00000014281)	MEF2A (ENSVVUG00000014258)	ENSVVUG00000014251	LRRC28 (ENSVVUG00000014237)	TTC23 (ENSVVUG00000014215)	ENSVVUG00000014213	ENSVVUG00000014200	IGF1R (ENSVVUG00000014162)	ENSVVUG00000014135	ENSVVUG00000014134	ENSVVUG00000014117	ARRDC4 (ENSVVUG00000014081)	NR2F2 (ENSVVUG00000014034)	ENSVVUG00000014025
Felidae	ANCESTRAL SPECIES	1	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT01000000220998	ENSGT00940000155164	ENSGT00960000190734	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00960000191040
Panthera	ANCESTRAL SPECIES	31	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT01000000220998	ENSGT00940000155164	ENSGT00960000190734	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.bb.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.l	ENSGT00940000157540.A.k.a	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Tiger	MODERN SPECIES	510	MCEE (ENSPTIG00000016474)	APBA2 (ENSPTIG00000010141)	ENTREP2 (ENSPTIG00000007810)	TJP1 (ENSPTIG00000016789)	TARS3 (ENSPTIG00000015184)	TM2D3 (ENSPTIG00000013716)	ENSPTIG00000012806	ENSPTIG00000009442	ENSPTIG00000007565	SELENOS (ENSPTIG00000005783)	CHSY1 (ENSPTIG00000004486)	LRRK1 (ENSPTIG00000021943)	ALDH1A3 (ENSPTIG00000020879)	ASB7 (ENSPTIG00000020501)	LINS1 (ENSPTIG00000019042)	CERS3 (ENSPTIG00000017954) ##22	ADAMTS17 (ENSPTIG00000015799)	LYSMD4 (ENSPTIG00000015532)	MEF2A (ENSPTIG00000012384)	LRRC28 (ENSPTIG00000008408)
Panthera_a	ANCESTRAL SPECIES	33	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT01000000220998	ENSGT00940000155164	ENSGT00960000190734	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b.bb.a	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00950000182901.a.a.b.b.a.a.d	ENSGT00940000157540.A.k.a	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
lion	MODERN SPECIES	6	APBA2 (ENSPLOG00000002596)	ENTREP2 (ENSPLOG00000002504)	ENSPLOG00000002440	TJP1 (ENSPLOG00000002196)	ENSPLOG00000002112	TARS3 (ENSPLOG00000002019)	TM2D3 (ENSPLOG00000001911)	PCSK6 (ENSPLOG00000001748)	SNRPA1 (ENSPLOG00000001692)	SELENOS (ENSPLOG00000001590)	CHSY1 (ENSPLOG00000001571)	LRRK1 (ENSPLOG00000001478)	ALDH1A3 (ENSPLOG00000001423)	ASB7 (ENSPLOG00000001405)	LINS1 (ENSPLOG00000001395)	CERS3 (ENSPLOG00000001374) ##22	ADAMTS17 (ENSPLOG00000001341)	LYSMD4 (ENSPLOG00000001315)	MEF2A (ENSPLOG00000001260)	ENSPLOG00000001230	LRRC28 (ENSPLOG00000001103)	TTC23 (ENSPLOG00000000979)	SYNM (ENSPLOG00000000942)	IGF1R (ENSPLOG00000000864)	ENSPLOG00000000777	ENSPLOG00000000759	ARRDC4 (ENSPLOG00000000729)	ENSPLOG00000000714	NR2F2 (ENSPLOG00000000687)	MCTP2 (ENSPLOG00000000608)	RGMA (ENSPLOG00000000561)
leopard	MODERN SPECIES	35	MPHOSPH10 (ENSPPRG00000003464)	MCEE (ENSPPRG00000003392)	APBA2 (ENSPPRG00000003278)	ENTREP2 (ENSPPRG00000001142)	TJP1 (ENSPPRG00000000374)	TARS3 (ENSPPRG00000017275)	TM2D3 (ENSPPRG00000011846)	PCSK6 (ENSPPRG00000010213)	ENSPPRG00000006797	SELENOS (ENSPPRG00000006154)	CHSY1 (ENSPPRG00000005175)	LRRK1 (ENSPPRG00000004870)	ALDH1A3 (ENSPPRG00000003584)	ASB7 (ENSPPRG00000002431)	LINS1 (ENSPPRG00000001306)	CERS3 (ENSPPRG00000000651) ##22	ADAMTS17 (ENSPPRG00000000286)	LYSMD4 (ENSPPRG00000023514)	MEF2A (ENSPPRG00000022408)	LRRC28 (ENSPPRG00000010463)	TTC23 (ENSPPRG00000010033)	ENSPPRG00000007913	IGF1R (ENSPPRG00000007786)	ENSPPRG00000006835	ENSPPRG00000006489	ARRDC4 (ENSPPRG00000005787)	ENSPPRG00000005608	ENSPPRG00000005558	MCTP2 (ENSPPRG00000005306)	RGMA (ENSPPRG00000002931)	ENSPPRG00000001629
Cat	MODERN SPECIES	237	APBA2 (ENSFCAG00000008067)	ENTREP2 (ENSFCAG00000008069)	ENSFCAG00000051704	ENSFCAG00000004346	TJP1 (ENSFCAG00000012043)	TARS3 (ENSFCAG00000008836)	TM2D3 (ENSFCAG00000029210)	PCSK6 (ENSFCAG00000013386)	SNRPA1 (ENSFCAG00000018594)	SELENOS (ENSFCAG00000028822)	CHSY1 (ENSFCAG00000037350)	LRRK1 (ENSFCAG00000001973)	ALDH1A3 (ENSFCAG00000010734)	ASB7 (ENSFCAG00000025849)	LINS1 (ENSFCAG00000036635)	CERS3 (ENSFCAG00000007543) ##22	ADAMTS17 (ENSFCAG00000015286)	LYSMD4 (ENSFCAG00000015285)	MEF2A (ENSFCAG00000022495)	LRRC28 (ENSFCAG00000013343)	TTC23 (ENSFCAG00000024404)	SYNM (ENSFCAG00000042066)	IGF1R (ENSFCAG00000018164)	ENSFCAG00000041281	ENSFCAG00000044819	ARRDC4 (ENSFCAG00000028328)	NR2F2 (ENSFCAG00000029941)	MCTP2 (ENSFCAG00000001135)	RGMA (ENSFCAG00000025034)	CHD2 (ENSFCAG00000003208)	ENSFCAG00000048059
Laurasiatheria_c	ANCESTRAL SPECIES	1	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00930000152882
Equus	ANCESTRAL SPECIES	4	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00390000011048.e.a	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Horse	MODERN SPECIES		MPHOSPH10 (ENSECAG00000005944)	MCEE (ENSECAG00000005917)	APBA2 (ENSECAG00000015516)	ENTREP2 (ENSECAG00000012223)	TJP1 (ENSECAG00000020528)	TARS3 (ENSECAG00000024315)	TM2D3 (ENSECAG00000022561)	PCSK6 (ENSECAG00000001688)	SNRPA1 (ENSECAG00000049484)	SELENOS (ENSECAG00000012386)	CHSY1 (ENSECAG00000010914)	LRRK1 (ENSECAG00000024161)	ALDH1A3 (ENSECAG00000008871)	ASB7 (ENSECAG00000003905)	LINS1 (ENSECAG00000018867)	CERS3 (ENSECAG00000013052) ##22	ADAMTS17 (ENSECAG00000000579)	LYSMD4 (ENSECAG00000000376)	MEF2A (ENSECAG00000011593)	LRRC28 (ENSECAG00000010529)	TTC23 (ENSECAG00000009104)	SYNM (ENSECAG00000000487)	IGF1R (ENSECAG00000021238)	PGPEP1L (ENSECAG00000018071)	ENSECAG00000040104	ENSECAG00000017976	ARRDC4 (ENSECAG00000009400)	ENSECAG00000048483	NR2F2 (ENSECAG00000008381)	MCTP2 (ENSECAG00000022677)	RGMA (ENSECAG00000020167)
Donkey	MODERN SPECIES	11	ENSEASG00005017746	ENSEASG00005017743	ENSEASG00005017737	ENSEASG00005017731	ENSEASG00005017725	ENSEASG00005017718	TM2D3 (ENSEASG00005017716)	PCSK6 (ENSEASG00005017712)	SNRPA1 (ENSEASG00005017706)	SELENOS (ENSEASG00005017704)	CHSY1 (ENSEASG00005017701)	LRRK1 (ENSEASG00005017696)	ALDH1A3 (ENSEASG00005017694)	ASB7 (ENSEASG00005017690)	LINS1 (ENSEASG00005036218)	CERS3 (ENSEASG00005017687) ##22	ADAMTS17 (ENSEASG00005017668)	LYSMD4 (ENSEASG00005036183)	MEF2A (ENSEASG00005017659)	LRRC28 (ENSEASG00005017658)	ENSEASG00005017656	ENSEASG00005017655	ENSEASG00005017653	ENSEASG00005017652	ENSEASG00005017651	ENSEASG00005017650	ENSEASG00005017648	ENSEASG00005017644	ENSEASG00005017640	ENSEASG00005016629	TM2D2 (ENSEASG00005031099)
Chiroptera	ANCESTRAL SPECIES	43	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Microchiroptera	ANCESTRAL SPECIES	42	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000163627	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Greater horseshoe bat	MODERN SPECIES	20	MPHOSPH10 (ENSRFEG00010016930)	MCEE (ENSRFEG00010016873)	APBA2 (ENSRFEG00010016756)	ENTREP2 (ENSRFEG00010016590)	TJP1 (ENSRFEG00010016082)	TARS3 (ENSRFEG00010015547)	TM2D3 (ENSRFEG00010015298)	PCSK6 (ENSRFEG00010014200)	SNRPA1 (ENSRFEG00010013941)	SELENOS (ENSRFEG00010013825)	CHSY1 (ENSRFEG00010013762)	LRRK1 (ENSRFEG00010013669)	ALDH1A3 (ENSRFEG00010013510)	ASB7 (ENSRFEG00010013431)	LINS1 (ENSRFEG00010013393)	CERS3 (ENSRFEG00010013357) ##22	ADAMTS17 (ENSRFEG00010013302)	LYSMD4 (ENSRFEG00010013232)	MEF2A (ENSRFEG00010012816)	LRRC28 (ENSRFEG00010012612)	TTC23 (ENSRFEG00010012513)	SYNM (ENSRFEG00010012407)	IGF1R (ENSRFEG00010012281)	ENSRFEG00010012112	ENSRFEG00010012055	ARRDC4 (ENSRFEG00010012007)	NR2F2 (ENSRFEG00010011894)	MCTP2 (ENSRFEG00010011139)	ENSRFEG00010011043	RGMA (ENSRFEG00010011018)	CHD2 (ENSRFEG00010010750)
Microbat	MODERN SPECIES	1458												ENSMLUG00000011989	ALDH1A3 (ENSMLUG00000013456)	ASB7 (ENSMLUG00000011079)	LINS1 (ENSMLUG00000004157)	CERS3 (ENSMLUG00000002945) ##22	ADAMTS17 (ENSMLUG00000002925)	LYSMD4 (ENSMLUG00000026294)	MEF2A (ENSMLUG00000016420)	LRRC28 (ENSMLUG00000001826)	TTC23 (ENSMLUG00000007933)	ENSMLUG00000016533
Megabat	MODERN SPECIES	938																CERS3 (ENSPVAG00000004485) ##22	ENSPVAG00000004484	ADAMTS17 (ENSPVAG00000004472)
Eulipotyphla	ANCESTRAL SPECIES	525														ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22
Common shrew	MODERN SPECIES	3791																ENSSARG00000003719 ##22
Hedgehog	MODERN SPECIES	4910														ASB7 (ENSEEUG00000002586)	LINS1 (ENSEEUG00000002562)	CERS3 (ENSEEUG00000002537) ##22
Marsupialia	ANCESTRAL SPECIES		ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000167112	ENSGT00530000063847.a	ENSGT00940000159268.f	ENSGT00940000159268.e	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a
Marsupialia_b	ANCESTRAL SPECIES		ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000167112	ENSGT00530000063847.a	ENSGT00940000159268.f	ENSGT00940000159268.e	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a
Diprotodontia	ANCESTRAL SPECIES		ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000167112	ENSGT00530000063847.a	ENSGT00940000159268.e	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888
Diprotodontia_a	ANCESTRAL SPECIES	1	ENSGT00390000011359	ENSGT00940000153941.a.a	ENSGT00940000158943	ENSGT00530000063335.A	ENSGT00940000155164	ENSGT00940000159348	ENSGT00940000158389	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000167112	ENSGT00530000063847.a	ENSGT00940000159268.e	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00970000198114	ENSGT00940000156291	ENSGT00950000183112.a
koala	MODERN SPECIES	6					TJP1 (ENSPCIG00000022463)	TARS3 (ENSPCIG00000022481)	TM2D3 (ENSPCIG00000022485)	PCSK6 (ENSPCIG00000027014)	SNRPA1 (ENSPCIG00000027264)	SELENOS (ENSPCIG00000030872)	CHSY1 (ENSPCIG00000011094)	LRRK1 (ENSPCIG00000010171)	ALDH1A3 (ENSPCIG00000011711)	ASB7 (ENSPCIG00000024081)	ENSPCIG00000024079	CERS3 (ENSPCIG00000024074) ##22	ADAMTS17 (ENSPCIG00000024064)	LYSMD4 (ENSPCIG00000016226)	MEF2A (ENSPCIG00000033941)	ENSPCIG00000016215	LRRC28 (ENSPCIG00000021863)	ENSPCIG00000033003	TTC23 (ENSPCIG00000021865)	ENSPCIG00000021866	IGF1R (ENSPCIG00000021906)	ENSPCIG00000026202	ENSPCIG00000026206	ENSPCIG00000026211	ARRDC4 (ENSPCIG00000026213)	ENSPCIG00000025821	ENSPCIG00000024158
Common wonbat	MODERN SPECIES	581	MPHOSPH10 (ENSVURG00010015493)	MCEE (ENSVURG00010015487)	APBA2 (ENSVURG00010015428)	ENTREP2 (ENSVURG00010015413)	TJP1 (ENSVURG00010014693)	TARS3 (ENSVURG00010009741)	TM2D3 (ENSVURG00010009626)	PCSK6 (ENSVURG00010009599)	SNRPA1 (ENSVURG00010009577)	SELENOS (ENSVURG00010009570)	CHSY1 (ENSVURG00010009566)	LRRK1 (ENSVURG00010009533)	ALDH1A3 (ENSVURG00010009507)	ASB7 (ENSVURG00010009488)	ENSVURG00010009474	CERS3 (ENSVURG00010009458) ##22	ADAMTS17 (ENSVURG00010009093)	LYSMD4 (ENSVURG00010009029)	MEF2A (ENSVURG00010008788)	LRRC28 (ENSVURG00010008740)	ENSVURG00010008734	TTC23 (ENSVURG00010008723)	ENSVURG00010008708	ENSVURG00010008695	IGF1R (ENSVURG00010008673)	ENSVURG00010008635	ENSVURG00010008616	ARRDC4 (ENSVURG00010008567)	NR2F2 (ENSVURG00010008510)	ENSVURG00010008422	MCTP2 (ENSVURG00010008372)
Wallaby	MODERN SPECIES	5995																CERS3 (ENSMEUG00000001077) ##22
Tasmanian devil	MODERN SPECIES	1	ENSSHAG00000029415	ENSSHAG00000015470	ENSSHAG00000028460	ENSSHAG00000025894	ENSSHAG00000012218	ENSSHAG00000010266	TM2D3 (ENSSHAG00000030739)	PCSK6 (ENSSHAG00000006838)	SNRPA1 (ENSSHAG00000006364)	SELENOS (ENSSHAG00000029939)	CHSY1 (ENSSHAG00000023490)	LRRK1 (ENSSHAG00000009850)	ALDH1A3 (ENSSHAG00000009473)	ASB7 (ENSSHAG00000005887)	LINS1 (ENSSHAG00000005100)	CERS3 (ENSSHAG00000002330) ##22	ADAMTS17 (ENSSHAG00000017515)	LYSMD4 (ENSSHAG00000026967)	MEF2A (ENSSHAG00000016994)	LRRC28 (ENSSHAG00000016134)	TTC23 (ENSSHAG00000015829)	ENSSHAG00000015672	ENSSHAG00000031535	ENSSHAG00000013808	ENSSHAG00000013419	ENSSHAG00000024142	ENSSHAG00000032214	ENSSHAG00000024770	NR2F2 (ENSSHAG00000023641)	ENSSHAG00000029236	MCTP2 (ENSSHAG00000006074)
Opossum	MODERN SPECIES		APBA2 (ENSMODG00000011835)	ENSMODG00000046838	ENTREP2 (ENSMODG00000011845)	ENSMODG00000041272	TJP1 (ENSMODG00000011885)	TARS3 (ENSMODG00000011941)	TM2D3 (ENSMODG00000011956)	PCSK6 (ENSMODG00000012001)	SNRPA1 (ENSMODG00000012020)	SELENOS (ENSMODG00000012032)	CHSY1 (ENSMODG00000012037)	LRRK1 (ENSMODG00000012068)	ALDH1A3 (ENSMODG00000012141)	ASB7 (ENSMODG00000038455)	LINS1 (ENSMODG00000012160)	CERS3 (ENSMODG00000012165) ##22	ADAMTS17 (ENSMODG00000012713)	LYSMD4 (ENSMODG00000012716)	MEF2A (ENSMODG00000012725)	ENSMODG00000012734	LRRC28 (ENSMODG00000012729)	TTC23 (ENSMODG00000012741)	ENSMODG00000012752	ENSMODG00000039789	IGF1R (ENSMODG00000012761)	ENSMODG00000012771	ENSMODG00000028693	ARRDC4 (ENSMODG00000012796)	ENSMODG00000045377	ENSMODG00000001936	ENSMODG00000012810
Platypus	MODERN SPECIES	16	SLC25A37 (ENSOANG00000008028)	ENSOANG00000008027	ENSOANG00000041651	STC1 (ENSOANG00000008026)	ENSOANG00000008025	ENSOANG00000008023	ENSOANG00000008022	ENSOANG00000008021	PCSK6 (ENSOANG00000002267)	SNRPA1 (ENSOANG00000011754)	ENSOANG00000002268	CHSY1 (ENSOANG00000015911)	ALDH1A3 (ENSOANG00000004381)	ASB7 (ENSOANG00000039282)	LINS1 (ENSOANG00000011000)	CERS3 (ENSOANG00000007333) ##22	ADAMTS17 (ENSOANG00000000145)	LYSMD4 (ENSOANG00000043818)	MEF2A (ENSOANG00000000143)	LRRC28 (ENSOANG00000000142)	TTC23 (ENSOANG00000000140)	ENSOANG00000000137	IGF1R (ENSOANG00000000134)	ENSOANG00000040180	ARRDC4 (ENSOANG00000009427)	NR2F2 (ENSOANG00000009426)	MCTP2 (ENSOANG00000007231)	RGMA (ENSOANG00000004384)	CHD2 (ENSOANG00000004385)	FAM174B (ENSOANG00000011485)	ST8SIA2 (ENSOANG00000046042)
Sauria	ANCESTRAL SPECIES	10	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000165193	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Lepidosauria	ANCESTRAL SPECIES	19	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Episquamata	ANCESTRAL SPECIES	9	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Toxicofera	ANCESTRAL SPECIES	15	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.c	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291
Elapidae	ANCESTRAL SPECIES	12	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645.c	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a.e	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205.a	ENSGT00940000157771	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392	ENSGT00950000183119.b.i	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f	ENSGT00950000182940.b.a.a	ENSGT00390000007857	ENSGT00390000017625	ENSGT00390000017392
Indian cobra	MODERN SPECIES	14	DET1 (ENSNNAG00000006677)	MRPS11 (ENSNNAG00000006701)	MRPL46 (ENSNNAG00000006724)	NTRK3 (ENSNNAG00000006741)	AGBL1 (ENSNNAG00000006780)	KLHL25 (ENSNNAG00000006876)	AKAP13 (ENSNNAG00000006972)	PLEKHO2 (ENSNNAG00000007978) ##32	PCSK6 (ENSNNAG00000008026)	SNRPA1 (ENSNNAG00000008089)	CHSY1 (ENSNNAG00000008149)	LRRK1 (ENSNNAG00000008221)	ALDH1A3 (ENSNNAG00000008422)	ASB7 (ENSNNAG00000008457)	LINS1 (ENSNNAG00000008465)	CERS3 (ENSNNAG00000008497) ##22	ADAMTS17 (ENSNNAG00000008597)	LYSMD4 (ENSNNAG00000009491)	MEF2A (ENSNNAG00000009515)	LRRC28 (ENSNNAG00000009572)	RGMA (ENSNNAG00000009627)	ENSNNAG00000009653	CHD2 (ENSNNAG00000009804)	FAM174B (ENSNNAG00000012241)	ENSNNAG00000012286	ST8SIA2 (ENSNNAG00000012336)	SLCO3A1 (ENSNNAG00000012344)	SV2B (ENSNNAG00000012357)	ENSNNAG00000012435	ENSNNAG00000012453	CLPX (ENSNNAG00000012472)
Elapidae_a	ANCESTRAL SPECIES	37	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a.e	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.u	ENSGT00940000160363	ENSGT00940000158815.d	ENSGT01050000244857.C.a.a.v	ENSGT00940000165193	ENSGT00940000158815.c	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205.a	ENSGT00940000157771	ENSGT00950000183112.a	ENSGT00940000155888.c	ENSGT00730000111392	ENSGT00950000183119.b.i	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f	ENSGT00950000182940.b.a.a	ENSGT00390000007857	ENSGT00390000017625	ENSGT00390000017392	ENSGT00390000008092.b
Blue-lipped sea krait	MODERN SPECIES	8112																ENSLLTG00000010451 ##22
Acanthophiinae	ANCESTRAL SPECIES	37	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a.e	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a.u	ENSGT00940000160363	ENSGT00940000158815.d	ENSGT01050000244857.C.a.a.v	ENSGT00940000165193	ENSGT00940000158815.c	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205.a	ENSGT00940000157771	ENSGT00950000183112.a	ENSGT00940000155888.c	ENSGT00730000111392	ENSGT00950000183119.b.i	ENSGT01030000234535.F.a	ENSGT01080000257410.A.f	ENSGT00950000182940.b.a.a	ENSGT00390000007857	ENSGT00390000017625	ENSGT00390000017392	ENSGT00390000008092.b
Mainland tiger snake	MODERN SPECIES	49		AGBL1 (ENSNSUG00000002113)	KLHL25 (ENSNSUG00000002135)	ENSNSUG00000002143	ENSNSUG00000002174	PLEKHO2 (ENSNSUG00000002176) ##32	PCSK6 (ENSNSUG00000002201)	ENSNSUG00000002202	SNRPA1 (ENSNSUG00000002204)	ENSNSUG00000002206	CHSY1 (ENSNSUG00000002209)	ENSNSUG00000002221	ALDH1A3 (ENSNSUG00000002611)	ASB7 (ENSNSUG00000002621)	ENSNSUG00000002625	CERS3 (ENSNSUG00000002627) ##22	ADAMTS17 (ENSNSUG00000002636)	LYSMD4 (ENSNSUG00000002785)	MEF2A (ENSNSUG00000002792)	ENSNSUG00000002798	LRRC28 (ENSNSUG00000002803)	RGMA (ENSNSUG00000002809)	ENSNSUG00000002811	ENSNSUG00000002817	ENSNSUG00000002825	ENSNSUG00000002827	ST8SIA2 (ENSNSUG00000002829)	SLCO3A1 (ENSNSUG00000002833)	SV2B (ENSNSUG00000002839)	SPG21 (ENSNSUG00000002842)	CLPX (ENSNSUG00000002848)
Eastern brown snake	MODERN SPECIES	43	MRPL46 (ENSPTXG00000005378)	NTRK3 (ENSPTXG00000005357)	AGBL1 (ENSPTXG00000005356)	KLHL25 (ENSPTXG00000005355)	AKAP13 (ENSPTXG00000005277)	PLEKHO2 (ENSPTXG00000005273) ##32	PCSK6 (ENSPTXG00000005043)	SNRPA1 (ENSPTXG00000005038)	ENSPTXG00000005036	CHSY1 (ENSPTXG00000005035)	LRRK1 (ENSPTXG00000005033)	ENSPTXG00000005032	ENSPTXG00000005031	ASB7 (ENSPTXG00000005030)	ENSPTXG00000005028	CERS3 (ENSPTXG00000005027) ##22	ADAMTS17 (ENSPTXG00000005026)	LYSMD4 (ENSPTXG00000005023)	MEF2A (ENSPTXG00000005022)	LRRC28 (ENSPTXG00000005021)	RGMA (ENSPTXG00000005020)	FAM174B (ENSPTXG00000003943)	ENSPTXG00000003942	ST8SIA2 (ENSPTXG00000003941)	SLCO3A1 (ENSPTXG00000003940)	SV2B (ENSPTXG00000003939)	SPG21 (ENSPTXG00000003938)	CLPX (ENSPTXG00000003937)	PDCD7 (ENSPTXG00000015762)	UBAP1L (ENSPTXG00000015759)	KBTBD13 (ENSPTXG00000015758)
Lizard	MODERN SPECIES	996												ENSACAG00000045464	ALDH1A3 (ENSACAG00000009322)	ASB7 (ENSACAG00000041021)	LINS1 (ENSACAG00000009809)	CERS3 (ENSACAG00000009830) ##22	ADAMTS17 (ENSACAG00000009834)	LYSMD4 (ENSACAG00000009916)	MEF2A (ENSACAG00000009923)	LRRC28 (ENSACAG00000008251)	SYNM (ENSACAG00000008247)	ENSACAG00000008089	ENSACAG00000008064
Laterata	ANCESTRAL SPECIES	16	ENSGT00390000016068	ENSGT00390000015400	ENSGT00940000155645	ENSGT00940000160936	ENSGT00950000182983.B.b	ENSGT00940000154146.a	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771.c	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Common wall lizard	MODERN SPECIES	5	AGBL1 (ENSPMRG00000019798)	KLHL25 (ENSPMRG00000019810)	ENSPMRG00000019815	ENSPMRG00000019839	PLEKHO2 (ENSPMRG00000019841) ##32	PCSK6 (ENSPMRG00000019850)	ENSPMRG00000019864	SNRPA1 (ENSPMRG00000019866)	ENSPMRG00000012891	ENSPMRG00000012892	CHSY1 (ENSPMRG00000012894)	ENSPMRG00000012897	LRRK1 (ENSPMRG00000012922)	ALDH1A3 (ENSPMRG00000013100)	ASB7 (ENSPMRG00000013109)	ENSPMRG00000013121 ##22	ENSPMRG00000013143	ENSPMRG00000013147	ENSPMRG00000013151	ADAMTS17 (ENSPMRG00000013159)	ENSPMRG00000013174	LYSMD4 (ENSPMRG00000013177)	MEF2A (ENSPMRG00000013184)	LRRC28 (ENSPMRG00000013197)	SYNM (ENSPMRG00000013204)	IGF1R (ENSPMRG00000013211)	PGPEP1L (ENSPMRG00000013228)	ENSPMRG00000013239	ARRDC4 (ENSPMRG00000013254)	ENSPMRG00000013263	NR2F2 (ENSPMRG00000013269)
Argentine black and white tegu	MODERN SPECIES	46	NTRK3 (ENSSMRG00000022292)	ENSSMRG00000022291	AGBL1 (ENSSMRG00000022289)	KLHL25 (ENSSMRG00000022288)	AKAP13 (ENSSMRG00000022287)	ENSSMRG00000022286	PLEKHO2 (ENSSMRG00000022285) ##32	PCSK6 (ENSSMRG00000022284)	SNRPA1 (ENSSMRG00000022283)	ENSSMRG00000022282	CHSY1 (ENSSMRG00000022281)	LRRK1 (ENSSMRG00000022280)	ALDH1A3 (ENSSMRG00000022279)	ASB7 (ENSSMRG00000022278)	LINS1 (ENSSMRG00000022277)	CERS3 (ENSSMRG00000022276) ##22	ADAMTS17 (ENSSMRG00000022275)	LYSMD4 (ENSSMRG00000022274)	MEF2A (ENSSMRG00000022273)	ENSSMRG00000022272	ENSSMRG00000022271	SYNM (ENSSMRG00000022270)	IGF1R (ENSSMRG00000022269)	ENSSMRG00000022268	ENSSMRG00000022267	ARRDC4 (ENSSMRG00000022266)	ENSSMRG00000022262	NR2F2 (ENSSMRG00000022261)	ENSSMRG00000022256	MCTP2 (ENSSMRG00000022255)	RGMA (ENSSMRG00000022252)
tuatara	MODERN SPECIES	1605	UBAP1L (ENSSPUG00000010040)	PDCD7 (ENSSPUG00000010062)	CLPX (ENSSPUG00000010113)	SPG21 (ENSSPUG00000010154)	ANKDD1A (ENSSPUG00000010169)	PLEKHO2 (ENSSPUG00000010218) ##32	PCSK6 (ENSSPUG00000010521)	SNRPA1 (ENSSPUG00000010899)	SELENOS (ENSSPUG00000010909)	CHSY1 (ENSSPUG00000010922)	LRRK1 (ENSSPUG00000010954)	ALDH1A3 (ENSSPUG00000011084)	ASB7 (ENSSPUG00000011103)	ENSSPUG00000011116	ENSSPUG00000011126	CERS3 (ENSSPUG00000011135) ##22	ADAMTS17 (ENSSPUG00000011161)	LYSMD4 (ENSSPUG00000011194)	MEF2A (ENSSPUG00000011223)	LRRC28 (ENSSPUG00000011250)	SYNM (ENSSPUG00000011271)	IGF1R (ENSSPUG00000011330)	ENSSPUG00000011577	ARRDC4 (ENSSPUG00000011601)	NR2F2 (ENSSPUG00000011649)
Archelosauria	ANCESTRAL SPECIES	13	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Archosauria	ANCESTRAL SPECIES	9	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Aves	ANCESTRAL SPECIES	14	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
African ostrich	MODERN SPECIES	834	ENSSCUG00000013230	KBTBD13 (ENSSCUG00000013233)	CLPX (ENSSCUG00000013235)	SPG21 (ENSSCUG00000013243)	ANKDD1A (ENSSCUG00000013249)	PLEKHO2 (ENSSCUG00000013256) ##32	PCSK6 (ENSSCUG00000013263)	SNRPA1 (ENSSCUG00000013266)	ENSSCUG00000013267	CHSY1 (ENSSCUG00000013269)	LRRK1 (ENSSCUG00000013278)	ALDH1A3 (ENSSCUG00000013282)	ENSSCUG00000013284	ASB7 (ENSSCUG00000013288)	LINS1 (ENSSCUG00000013289)	CERS3 (ENSSCUG00000013292) ##22	ADAMTS17 (ENSSCUG00000013297)	LYSMD4 (ENSSCUG00000013305)	MEF2A (ENSSCUG00000013307)	LRRC28 (ENSSCUG00000013313)	SYNM (ENSSCUG00000013316)	IGF1R (ENSSCUG00000013320)	PGPEP1L (ENSSCUG00000013324)	ENSSCUG00000013326	ENSSCUG00000013327	ARRDC4 (ENSSCUG00000013328)	NR2F2 (ENSSCUG00000013332)	MCTP2 (ENSSCUG00000013344)	RGMA (ENSSCUG00000013347)	CHD2 (ENSSCUG00000013486)	FAM174B (ENSSCUG00000013749)
Neognathae	ANCESTRAL SPECIES	11	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Neognathae_b	ANCESTRAL SPECIES	13	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Passeriformes	ANCESTRAL SPECIES	12	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Passeriformes_d	ANCESTRAL SPECIES	12	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Passeriformes_g	ANCESTRAL SPECIES	13	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Medium ground finch	MODERN SPECIES	69	RASL12 (ENSGFOG00000010043)	KBTBD13 (ENSGFOG00000010042)	UBAP1L (ENSGFOG00000010035)	CLPX (ENSGFOG00000010023)	SPG21 (ENSGFOG00000010013)	ANKDD1A (ENSGFOG00000009999)	PLEKHO2 (ENSGFOG00000009993) ##32	PCSK6 (ENSGFOG00000009712)	SNRPA1 (ENSGFOG00000009677)	ENSGFOG00000009658	CHSY1 (ENSGFOG00000009653)	LRRK1 (ENSGFOG00000009280)	ALDH1A3 (ENSGFOG00000009239)	ASB7 (ENSGFOG00000009228)	LINS1 (ENSGFOG00000009215)	CERS3 (ENSGFOG00000009195) ##22	ADAMTS17 (ENSGFOG00000009139)	LYSMD4 (ENSGFOG00000013214)	MEF2A (ENSGFOG00000013210)	LRRC28 (ENSGFOG00000013207)	SYNM (ENSGFOG00000013202)	IGF1R (ENSGFOG00000013193)	PGPEP1L (ENSGFOG00000013191)	ENSGFOG00000013186
Passeroidea	ANCESTRAL SPECIES	12	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00390000015688	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT01030000235343	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Zebra finch	MODERN SPECIES	1	RASL12 (ENSTGUG00000009081)	KBTBD13 (ENSTGUG00000020316)	PDCD7 (ENSTGUG00000009069)	CLPX (ENSTGUG00000009033)	SPG21 (ENSTGUG00000019593)	ANKDD1A (ENSTGUG00000009014)	PLEKHO2 (ENSTGUG00000009006) ##32	PCSK6 (ENSTGUG00000008972)	SNRPA1 (ENSTGUG00000008957)	SELENOS (ENSTGUG00000008949)	CHSY1 (ENSTGUG00000008945)	LRRK1 (ENSTGUG00000008909)	ALDH1A3 (ENSTGUG00000008854)	ASB7 (ENSTGUG00000008846)	LINS1 (ENSTGUG00000008844)	CERS3 (ENSTGUG00000008811) ##22	ADAMTS17 (ENSTGUG00000008763)	LYSMD4 (ENSTGUG00000008759)	MEF2A (ENSTGUG00000008733)	LRRC28 (ENSTGUG00000008713)	SYNM (ENSTGUG00000008704)	IGF1R (ENSTGUG00000008636)	PGPEP1L (ENSTGUG00000008630)	ENSTGUG00000008622	ARRDC4 (ENSTGUG00000008606)	NR2F2 (ENSTGUG00000008599)	MCTP2 (ENSTGUG00000008595)	ENSTGUG00000024518	RGMA (ENSTGUG00000029290)	CHD2 (ENSTGUG00000008540)	FAM174B (ENSTGUG00000021975)
Common canary	MODERN SPECIES	12	KBTBD13 (ENSSCAG00000010108)	UBAP1L (ENSSCAG00000010105)	PDCD7 (ENSSCAG00000010101)	CLPX (ENSSCAG00000010094)	SPG21 (ENSSCAG00000010087)	ANKDD1A (ENSSCAG00000010071)	PLEKHO2 (ENSSCAG00000010064) ##32	PCSK6 (ENSSCAG00000009697)	SNRPA1 (ENSSCAG00000009581)	SELENOS (ENSSCAG00000009576)	CHSY1 (ENSSCAG00000009547)	LRRK1 (ENSSCAG00000009533)	ALDH1A3 (ENSSCAG00000008577)	ASB7 (ENSSCAG00000008427)	LINS1 (ENSSCAG00000008423)	CERS3 (ENSSCAG00000008412) ##22	ADAMTS17 (ENSSCAG00000008214)	ENSSCAG00000008160	MEF2A (ENSSCAG00000008135)	LRRC28 (ENSSCAG00000008126)	SYNM (ENSSCAG00000008116)	IGF1R (ENSSCAG00000008094)	ENSSCAG00000008082	ENSSCAG00000008075	ARRDC4 (ENSSCAG00000008061)	NR2F2 (ENSSCAG00000008045)	MCTP2 (ENSSCAG00000008024)	ENSSCAG00000008002	RGMA (ENSSCAG00000007999)	CHD2 (ENSSCAG00000006666)	FAM174B (ENSSCAG00000006353)
Great tit	MODERN SPECIES	1	UBAP1L (ENSPMJG00000009813)	PDCD7 (ENSPMJG00000009809)	CLPX (ENSPMJG00000009789)	SPG21 (ENSPMJG00000009786)	ANKDD1A (ENSPMJG00000009785)	PLEKHO2 (ENSPMJG00000009784) ##32	ENSPMJG00000009781	ENSPMJG00000009780	SNRPA1 (ENSPMJG00000009778)	ENSPMJG00000009776	CHSY1 (ENSPMJG00000009774)	LRRK1 (ENSPMJG00000009770)	ALDH1A3 (ENSPMJG00000009765)	ASB7 (ENSPMJG00000009756)	LINS1 (ENSPMJG00000009754)	CERS3 (ENSPMJG00000009748) ##22	ADAMTS17 (ENSPMJG00000009743)	LYSMD4 (ENSPMJG00000009728)	MEF2A (ENSPMJG00000009721)	LRRC28 (ENSPMJG00000009718)	SYNM (ENSPMJG00000009716)	IGF1R (ENSPMJG00000009712)	PGPEP1L (ENSPMJG00000009703)	ENSPMJG00000009692	ENSPMJG00000009683	ARRDC4 (ENSPMJG00000009682)	NR2F2 (ENSPMJG00000009666)	MCTP2 (ENSPMJG00000009636)	ENSPMJG00000009583	RGMA (ENSPMJG00000009581)	CHD2 (ENSPMJG00000002477)
Neognathae_c	ANCESTRAL SPECIES	15	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00960000192825	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Golden eagle	MODERN SPECIES	21	KBTBD13 (ENSACCG00020008880)	UBAP1L (ENSACCG00020008862)	PDCD7 (ENSACCG00020008848)	CLPX (ENSACCG00020008811)	SPG21 (ENSACCG00020008780)	ANKDD1A (ENSACCG00020008748)	PLEKHO2 (ENSACCG00020008731) ##32	PCSK6 (ENSACCG00020008704)	SNRPA1 (ENSACCG00020008695)	ENSACCG00020008684	CHSY1 (ENSACCG00020008668)	LRRK1 (ENSACCG00020008628)	ALDH1A3 (ENSACCG00020008600)	ASB7 (ENSACCG00020008576)	ENSACCG00020008555	CERS3 (ENSACCG00020008531) ##22	ADAMTS17 (ENSACCG00020008487)	LYSMD4 (ENSACCG00020008454)	MEF2A (ENSACCG00020008432)	LRRC28 (ENSACCG00020008404)	SYNM (ENSACCG00020008386)	IGF1R (ENSACCG00020008027)	PGPEP1L (ENSACCG00020007599)	ENSACCG00020007583	ARRDC4 (ENSACCG00020007572)	NR2F2 (ENSACCG00020007558)	ENSACCG00020007541	ENSACCG00020007528	ENSACCG00020007515	RGMA (ENSACCG00020007505)	CHD2 (ENSACCG00020006864)
Kakapo	MODERN SPECIES	1	UBAP1L (ENSSHBG00005014999)	PDCD7 (ENSSHBG00005015010)	CLPX (ENSSHBG00005015027)	SPG21 (ENSSHBG00005015042)	ANKDD1A (ENSSHBG00005015083)	PLEKHO2 (ENSSHBG00005015094) ##32	PCSK6 (ENSSHBG00005015101)	SNRPA1 (ENSSHBG00005015122)	ENSSHBG00005015133	CHSY1 (ENSSHBG00005015141)	ENSSHBG00005015144	LRRK1 (ENSSHBG00005015156)	ALDH1A3 (ENSSHBG00005015357)	ASB7 (ENSSHBG00005017700)	LINS1 (ENSSHBG00005017706)	CERS3 (ENSSHBG00005017724) ##22	ADAMTS17 (ENSSHBG00005017732)	LYSMD4 (ENSSHBG00005017740)	MEF2A (ENSSHBG00005017744)	LRRC28 (ENSSHBG00005017754)	SYNM (ENSSHBG00005017763)	IGF1R (ENSSHBG00005017772)	PGPEP1L (ENSSHBG00005017780)	ENSSHBG00005017785	ARRDC4 (ENSSHBG00005017791)	NR2F2 (ENSSHBG00005017820)	MCTP2 (ENSSHBG00005017867)	RGMA (ENSSHBG00005017952)	ENSSHBG00005017955	CHD2 (ENSSHBG00005018022)	FAM174B (ENSSHBG00005018738)
Galloanserae	ANCESTRAL SPECIES	10	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Anatidae	ANCESTRAL SPECIES	36	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A.m
Pink-footed goose	MODERN SPECIES	52	KBTBD13 (ENSABRG00000009312)	UBAP1L (ENSABRG00000009337)	ENSABRG00000009376	CLPX (ENSABRG00000009416)	SPG21 (ENSABRG00000009446)	ANKDD1A (ENSABRG00000009479)	PLEKHO2 (ENSABRG00000009497) ##32	PCSK6 (ENSABRG00000009522)	SNRPA1 (ENSABRG00000009755)	ENSABRG00000009769	CHSY1 (ENSABRG00000009770)	LRRK1 (ENSABRG00000009784)	ALDH1A3 (ENSABRG00000009908)	ASB7 (ENSABRG00000009929)	LINS1 (ENSABRG00000009945)	CERS3 (ENSABRG00000009958) ##22	ADAMTS17 (ENSABRG00000009967)	LYSMD4 (ENSABRG00000009987)	MEF2A (ENSABRG00000009993)	LRRC28 (ENSABRG00000010004)	SYNM (ENSABRG00000010010)	IGF1R (ENSABRG00000010013)	PGPEP1L (ENSABRG00000010035)	ENSABRG00000010042	ARRDC4 (ENSABRG00000010051)	NR2F2 (ENSABRG00000010079)
Duck	MODERN SPECIES	2	RASL12 (ENSAPLG00000015628)	KBTBD13 (ENSAPLG00000015571)	UBAP1L (ENSAPLG00000023567)	CLPX (ENSAPLG00000014863)	SPG21 (ENSAPLG00000014668)	ANKDD1A (ENSAPLG00000014397)	PLEKHO2 (ENSAPLG00000027780) ##32	PCSK6 (ENSAPLG00000005333)	SNRPA1 (ENSAPLG00000005771)	ENSAPLG00000005939	CHSY1 (ENSAPLG00000005992)	LRRK1 (ENSAPLG00000005994)	ALDH1A3 (ENSAPLG00000006274)	ASB7 (ENSAPLG00000006684)	LINS1 (ENSAPLG00000006710)	CERS3 (ENSAPLG00000006825) ##22	ADAMTS17 (ENSAPLG00000006978)	MEF2A (ENSAPLG00000007352)	LRRC28 (ENSAPLG00000008018)	SYNM (ENSAPLG00000008430)	IGF1R (ENSAPLG00000008504)	PGPEP1L (ENSAPLG00000009905)	ENSAPLG00000010042	ARRDC4 (ENSAPLG00000010161)	ENSAPLG00000021743	MCTP2 (ENSAPLG00000010678)	ENSAPLG00000023765	RGMA (ENSAPLG00000024033)	ENSAPLG00000022985	ENSAPLG00000011141	ENSAPLG00000016881
Phasianidae	ANCESTRAL SPECIES	11	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888	ENSGT00730000111392
Japanese quail	MODERN SPECIES	1	RASL12 (ENSCJPG00005020755)	KBTBD13 (ENSCJPG00005020754)	UBAP1L (ENSCJPG00005020753)	PDCD7 (ENSCJPG00005020752)	CLPX (ENSCJPG00005020729)	SPG21 (ENSCJPG00005020726)	PLEKHO2 (ENSCJPG00005020725) ##32	PCSK6 (ENSCJPG00005020709)	SNRPA1 (ENSCJPG00005020683)	ENSCJPG00005020679	CHSY1 (ENSCJPG00005020677)	LRRK1 (ENSCJPG00005020655)	ALDH1A3 (ENSCJPG00005020654)	ASB7 (ENSCJPG00005020652)	LINS1 (ENSCJPG00005020651)	CERS3 (ENSCJPG00005020650) ##22	ADAMTS17 (ENSCJPG00005020649)	LYSMD4 (ENSCJPG00005020648)	MEF2A (ENSCJPG00005020647)	ENSCJPG00005020646	ENSCJPG00005020645	SYNM (ENSCJPG00005020644)	IGF1R (ENSCJPG00005020642)	PGPEP1L (ENSCJPG00005020641)	ENSCJPG00005020640	ARRDC4 (ENSCJPG00005020636)	NR2F2 (ENSCJPG00005020621)	MCTP2 (ENSCJPG00005020603)	ENSCJPG00005020593	RGMA (ENSCJPG00005020589)	ENSCJPG00005020588
Phasianidae_b	ANCESTRAL SPECIES	11	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392	ENSGT01030000234535.F.a
Chicken	MODERN SPECIES	1	KBTBD13 (ENSGALG00010017654)	UBAP1L (ENSGALG00010017620)	PDCD7 (ENSGALG00010017616)	CLPX (ENSGALG00010017577)	SPG21 (ENSGALG00010019230)	ANKDD1A (ENSGALG00010019185)	PLEKHO2 (ENSGALG00010019123) ##32	PCSK6 (ENSGALG00010019081)	SNRPA1 (ENSGALG00010019068)	SELENOS (ENSGALG00010019046)	CHSY1 (ENSGALG00010019026)	LRRK1 (ENSGALG00010019013)	ALDH1A3 (ENSGALG00010019001)	ASB7 (ENSGALG00010018961)	LINS1 (ENSGALG00010018925)	CERS3 (ENSGALG00010018916) ##22	ADAMTS17 (ENSGALG00010018887)	LYSMD4 (ENSGALG00010018854)	MEF2A (ENSGALG00010018848)	LRRC28 (ENSGALG00010018819)	SYNM (ENSGALG00010018753)	IGF1R (ENSGALG00010018730)	PGPEP1L (ENSGALG00010018704)	FAM169B (ENSGALG00010018654)	ARRDC4 (ENSGALG00010018623)	NR2F2 (ENSGALG00010016558)	MCTP2 (ENSGALG00010018602)	ENSGALG00010018562	ENSGALG00010018553	RGMA (ENSGALG00010018548)	CHD2 (ENSGALG00010018539)
Turkey	MODERN SPECIES	3	MTFMT (ENSMGAG00000009584)	RASL12 (ENSMGAG00000009547)	KBTBD13 (ENSMGAG00000009546)	UBAP1L (ENSMGAG00000017613)	CLPX (ENSMGAG00000009513)	ENSMGAG00000009485	ENSMGAG00000009470 ##32	PCSK6 (ENSMGAG00000009429)	SNRPA1 (ENSMGAG00000009427)	ENSMGAG00000019541	CHSY1 (ENSMGAG00000009415)	LRRK1 (ENSMGAG00000009400)	ALDH1A3 (ENSMGAG00000009365)	ASB7 (ENSMGAG00000009356)	LINS1 (ENSMGAG00000009350)	CERS3 (ENSMGAG00000018099) ##22	ADAMTS17 (ENSMGAG00000009321)	LYSMD4 (ENSMGAG00000009319)	MEF2A (ENSMGAG00000009283)	LRRC28 (ENSMGAG00000009272)	SYNM (ENSMGAG00000009261)	ENSMGAG00000009164	ENSMGAG00000009160	ENSMGAG00000009156	ARRDC4 (ENSMGAG00000009134)	MCTP2 (ENSMGAG00000009089)	RGMA (ENSMGAG00000018555)	CHD2 (ENSMGAG00000008966)	ST8SIA2 (ENSMGAG00000008949)	SLCO3A1 (ENSMGAG00000008934)	SV2B (ENSMGAG00000008885)
Australian saltwater crocodile	MODERN SPECIES	31	ENSCPRG00005000092	CLPX (ENSCPRG00005000076)	SPG21 (ENSCPRG00005000063)	ANKDD1A (ENSCPRG00005018498)	PLEKHO2 (ENSCPRG00005018494) ##32	PCSK6 (ENSCPRG00005018373)	SNRPA1 (ENSCPRG00005018268)	SELENOS (ENSCPRG00005018265)	CHSY1 (ENSCPRG00005018263)	LRRK1 (ENSCPRG00005018261)	ALDH1A3 (ENSCPRG00005017924)	ENSCPRG00005017721	ENSCPRG00005017719	ENSCPRG00005017716	LINS1 (ENSCPRG00005017710)	CERS3 (ENSCPRG00005017704) ##22	ADAMTS17 (ENSCPRG00005017685)	LYSMD4 (ENSCPRG00005017681)	MEF2A (ENSCPRG00005017679)	LRRC28 (ENSCPRG00005017672)	TTC23 (ENSCPRG00005017669)	ENSCPRG00005017667	ENSCPRG00005017665	IGF1R (ENSCPRG00005017652)	ENSCPRG00005017647	ENSCPRG00005017641	ARRDC4 (ENSCPRG00005017633)	NR2F2 (ENSCPRG00005017631)	MCTP2 (ENSCPRG00005017616)	RGMA (ENSCPRG00005017606)	ENSCPRG00005017604
Cryptodira	ANCESTRAL SPECIES	13	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Testudinoidea	ANCESTRAL SPECIES	6	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.k	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Emydidae	ANCESTRAL SPECIES	21	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00390000017392	ENSGT00390000017625	ENSGT00390000007857	ENSGT00940000154170.B	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268.a	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.l	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT00940000155888	ENSGT00730000111392
Three-toed box turtle	MODERN SPECIES	27	RASL12 (ENSTMTG00000006934)	KBTBD13 (ENSTMTG00000006908)	UBAP1L (ENSTMTG00000006872)	PDCD7 (ENSTMTG00000006848)	CLPX (ENSTMTG00000006784)	SPG21 (ENSTMTG00000006774)	PLEKHO2 (ENSTMTG00000006762) ##32	PCSK6 (ENSTMTG00000006373)	SNRPA1 (ENSTMTG00000006322)	ENSTMTG00000006305	CHSY1 (ENSTMTG00000006292)	LRRK1 (ENSTMTG00000005995)	ALDH1A3 (ENSTMTG00000005802)	ASB7 (ENSTMTG00000005777)	LINS1 (ENSTMTG00000005758)	CERS3 (ENSTMTG00000005548) ##22	ADAMTS17 (ENSTMTG00000005388)	LYSMD4 (ENSTMTG00000005345)	MEF2A (ENSTMTG00000005327)	LRRC28 (ENSTMTG00000005301)	TTC23 (ENSTMTG00000005276)	ENSTMTG00000005261	ENSTMTG00000005256	IGF1R (ENSTMTG00000004192)	PGPEP1L (ENSTMTG00000004109)	ENSTMTG00000004081	NR2F2 (ENSTMTG00000004071)	MCTP2 (ENSTMTG00000003294)	ENSTMTG00000003219	RGMA (ENSTMTG00000003200)	CHD2 (ENSTMTG00000000844)
painted turtle	MODERN SPECIES	2428	RASL12 (ENSCPBG00000019681)	UBAP1L (ENSCPBG00000019676)	PDCD7 (ENSCPBG00000019669)	CLPX (ENSCPBG00000019660)	SPG21 (ENSCPBG00000019655)	ANKDD1A (ENSCPBG00000019650)	PLEKHO2 (ENSCPBG00000019640) ##32	PCSK6 (ENSCPBG00000019628)	SNRPA1 (ENSCPBG00000019625)	ENSCPBG00000019621	CHSY1 (ENSCPBG00000019619)	LRRK1 (ENSCPBG00000019610)	ALDH1A3 (ENSCPBG00000019604)	ASB7 (ENSCPBG00000019600)	LINS1 (ENSCPBG00000019595)	CERS3 (ENSCPBG00000019593) ##22	ADAMTS17 (ENSCPBG00000019583)	LYSMD4 (ENSCPBG00000019575)	MEF2A (ENSCPBG00000019567)	LRRC28 (ENSCPBG00000019555)	ENSCPBG00000019551	SYNM (ENSCPBG00000019546)	IGF1R (ENSCPBG00000019537)	PGPEP1L (ENSCPBG00000019533)	ENSCPBG00000019530	ARRDC4 (ENSCPBG00000019526)	NR2F2 (ENSCPBG00000019514)	MCTP2 (ENSCPBG00000019501)	RGMA (ENSCPBG00000019493)	CHD2 (ENSCPBG00000018049)	FAM174B (ENSCPBG00000018037)
Testudinidae	ANCESTRAL SPECIES	3	ENSGT00940000160167	ENSGT00940000161629	ENSGT00390000008092.b	ENSGT00960000189242	ENSGT00390000017625	ENSGT00390000007857	ENSGT00530000063760.a ##32	ENSGT00940000159506	ENSGT00940000153289.b	ENSGT00940000166109	ENSGT01050000244857.C.a.a	ENSGT00940000160363	ENSGT00940000158815	ENSGT00940000158068	ENSGT00390000001790	ENSGT01030000234515.a.b.a.b ##22	ENSGT00940000158773	ENSGT00940000160583	ENSGT00940000156205	ENSGT00940000157771	ENSGT00530000063847.a	ENSGT00940000159268	ENSGT00940000156682	ENSGT00390000015368.a.b	ENSGT00510000048902.b	ENSGT00940000160523.k	ENSGT00940000157540.A	ENSGT00940000156291	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000155888
Goode s thornscrub tortoise	MODERN SPECIES	1	ENSGEVG00005006705	KBTBD13 (ENSGEVG00005006765)	UBAP1L (ENSGEVG00005006777)	ENSGEVG00005006801	CLPX (ENSGEVG00005006842)	SPG21 (ENSGEVG00005006892)	PLEKHO2 (ENSGEVG00005006925) ##32	PCSK6 (ENSGEVG00005007031)	SNRPA1 (ENSGEVG00005007565)	ENSGEVG00005007611	CHSY1 (ENSGEVG00005007634)	LRRK1 (ENSGEVG00005007673)	ALDH1A3 (ENSGEVG00005007742)	ASB7 (ENSGEVG00005007846)	LINS1 (ENSGEVG00005007867)	CERS3 (ENSGEVG00005007885) ##22	ADAMTS17 (ENSGEVG00005007954)	LYSMD4 (ENSGEVG00005008178)	MEF2A (ENSGEVG00005008231)	LRRC28 (ENSGEVG00005008352)	TTC23 (ENSGEVG00005008404)	SYNM (ENSGEVG00005008569)	IGF1R (ENSGEVG00005008591)	PGPEP1L (ENSGEVG00005008625)	ENSGEVG00005008642	ENSGEVG00005008671	ARRDC4 (ENSGEVG00005008692)	NR2F2 (ENSGEVG00005008731)	ENSGEVG00005008764	ENSGEVG00005008821	RGMA (ENSGEVG00005008884)
Abingdon island giant tortoise	MODERN SPECIES	2548	MTFMT (ENSCABG00000013646)	RASL12 (ENSCABG00000013642)	KBTBD13 (ENSCABG00000013639)	UBAP1L (ENSCABG00000013636)	CLPX (ENSCABG00000013633)	SPG21 (ENSCABG00000013631)	PLEKHO2 (ENSCABG00000013628) ##32	PCSK6 (ENSCABG00000013580)	SNRPA1 (ENSCABG00000013576)	ENSCABG00000013575	CHSY1 (ENSCABG00000013574)	ENSCABG00000013572	ALDH1A3 (ENSCABG00000013571)	ASB7 (ENSCABG00000013570)	LINS1 (ENSCABG00000013569)	CERS3 (ENSCABG00000013568) ##22	ADAMTS17 (ENSCABG00000013567)
Chinese turtle	MODERN SPECIES	1534	KBTBD13 (ENSPSIG00000000666)	UBAP1L (ENSPSIG00000013562)	PDCD7 (ENSPSIG00000013569)	CLPX (ENSPSIG00000013590)	SPG21 (ENSPSIG00000013709)	ANKDD1A (ENSPSIG00000013712)	PLEKHO2 (ENSPSIG00000013721) ##32	PCSK6 (ENSPSIG00000013729)	SNRPA1 (ENSPSIG00000013954)	SELENOS (ENSPSIG00000013962)	CHSY1 (ENSPSIG00000013984)	LRRK1 (ENSPSIG00000014010)	ALDH1A3 (ENSPSIG00000014175)	ASB7 (ENSPSIG00000014716)	LINS1 (ENSPSIG00000014719)	CERS3 (ENSPSIG00000014723) ##22	ADAMTS17 (ENSPSIG00000014855)	LYSMD4 (ENSPSIG00000014985)	MEF2A (ENSPSIG00000015011)	LRRC28 (ENSPSIG00000015022)	SYNM (ENSPSIG00000015098)	IGF1R (ENSPSIG00000015104)	ENSPSIG00000000269	PGPEP1L (ENSPSIG00000015110)	ENSPSIG00000015115
Anura	ANCESTRAL SPECIES		ENSGT00730000111392	ENSGT00940000155888	ENSGT00950000183112.a	ENSGT01030000235343	ENSGT00940000156291	ENSGT00940000157540.A	ENSGT00940000160523	ENSGT00510000048902.b	ENSGT00390000015368.a.b	ENSGT00940000156682	ENSGT00940000159268	ENSGT00940000157771	ENSGT00940000156205	ENSGT00940000160583	ENSGT00940000158773	ENSGT01030000234515.a.b.a.b ##22	ENSGT00390000001790	ENSGT00940000158068	ENSGT00940000158815	ENSGT00940000160363	ENSGT01050000244857.C.a.a	ENSGT00390000015688	ENSGT00940000153289.b	ENSGT00940000159506	ENSGT00530000063760.a ##32	ENSGT00940000154170.B	ENSGT00390000007857	ENSGT00390000017625	ENSGT00390000017392.g	ENSGT00390000008092.b	ENSGT00940000161629
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000004657	ENSLLEG00000004675	ENSLLEG00000004679	ARRDC4 (ENSLLEG00000004688)	ENSLLEG00000004707	ENSLLEG00000004728	ENSLLEG00000004740	ENSLLEG00000004756	ENSLLEG00000004781	ENSLLEG00000004794	ENSLLEG00000004803	LRRC28 (ENSLLEG00000004827)	MEF2A (ENSLLEG00000004885)	LYSMD4 (ENSLLEG00000004955)	ADAMTS17 (ENSLLEG00000004979)	ENSLLEG00000005068 ##22	ENSLLEG00000005104	LINS1 (ENSLLEG00000005125)	ASB7 (ENSLLEG00000005169)	ALDH1A3 (ENSLLEG00000005216)	LRRK1 (ENSLLEG00000005249)	ENSLLEG00000005464	CHSY1 (ENSLLEG00000005492)	SELENOS (ENSLLEG00000005521)	SNRPA1 (ENSLLEG00000005574)	PCSK6 (ENSLLEG00000005649)	ENSLLEG00000006114	PLEKHO2 (ENSLLEG00000006192) ##32	ENSLLEG00000006380	ANKDD1A (ENSLLEG00000006400)	SPG21 (ENSLLEG00000006584)
Frog	MODERN SPECIES	3	mctp2 (ENSXETG00000024140)	ENSXETG00000047214	ENSXETG00000041652	nr2f2 (ENSXETG00000022346)	arrdc4 (ENSXETG00000002108)	fam169b (ENSXETG00000037935)	pgpep1l (ENSXETG00000002109)	igf1r (ENSXETG00000002112)	synm (ENSXETG00000039139)	lrrc28 (ENSXETG00000018804)	ENSXETG00000047452	mef2a (ENSXETG00000018788)	ENSXETG00000048597	lysmd4 (ENSXETG00000038655)	adamts17 (ENSXETG00000018779)	cers3 (ENSXETG00000027994) ##22	lins1 (ENSXETG00000018766)	asb7 (ENSXETG00000018765)	aldh1a3 (ENSXETG00000018751)	lrrk1 (ENSXETG00000015924)	chsy1 (ENSXETG00000018744)	selenos (ENSXETG00000027997)	snrpa1 (ENSXETG00000006663)	plekho2 (ENSXETG00000006662) ##32	ankdd1a (ENSXETG00000006661)	spg21 (ENSXETG00000006659)	clpx (ENSXETG00000006656)	pdcd7 (ENSXETG00000040352)	ubap1l (ENSXETG00000036190)	kbtbd13 (ENSXETG00000006653)	rasl12 (ENSXETG00000040362)
Coelacanth	MODERN SPECIES	280								PCSK6 (ENSLACG00000018242)	SNRPA1 (ENSLACG00000018217)	selenos (ENSLACG00000018206)	CHSY1 (ENSLACG00000018092)	LRRK1 (ENSLACG00000017936)	ALDH1A3 (ENSLACG00000017897)	ASB7 (ENSLACG00000017743)	LINS1 (ENSLACG00000017725)	CERS3 (ENSLACG00000017653) ##22	ADAMTS17 (ENSLACG00000017235)	LYSMD4 (ENSLACG00000017183)	CLPX (ENSLACG00000017095)	PDCD7 (ENSLACG00000017066)	KBTBD13 (ENSLACG00000016995)	RASL12 (ENSLACG00000016896)	MTFMT (ENSLACG00000016817)	si:ch73-314g15.3 (ENSLACG00000016787)	CILP (ENSLACG00000016729)	gnrhr1 (ENSLACG00000016584)	ENSLACG00000016540	PARP16 (ENSLACG00000016410)	IGDCC3 (ENSLACG00000015818)	IGDCC4 (ENSLACG00000014876)	DPP8 (ENSLACG00000014154)
Cyclostomata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.a #22
Hagfish	MODERN SPECIES	90				ENSEBUG00000001027	ENSEBUG00000005206	ENSEBUG00000008526	ENSEBUG00000013127 #13	ENSEBUG00000013962	ENSEBUG00000008746	ENSEBUG00000011645	ENSEBUG00000015319	cox5aa (ENSEBUG00000007464)	ENSEBUG00000008223	ENSEBUG00000015709	ENSEBUG00000006009	ENSEBUG00000010805 #22	ENSEBUG00000012554	ENSEBUG00000006520	ENSEBUG00000014114	ENSEBUG00000005825	got2b (ENSEBUG00000005634)	ENSEBUG00000004711	cog4 (ENSEBUG00000013243)	ENSEBUG00000012297	ENSEBUG00000015900	ENSEBUG00000011290	ENSEBUG00000013697	ELMO1 (ENSEBUG00000012797)	ENSEBUG00000008055	ENSEBUG00000016419	cnot10 (ENSEBUG00000014450)
Vertebrata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b ##22
Euteleostomi	ANCESTRAL SPECIES	158	ENSGT00390000012434	ENSGT00390000007212	ENSGT00940000166580	ENSGT00940000162714	ENSGT00530000063553.b.a	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000
Actinopterygii	ANCESTRAL SPECIES	288					ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.a.a	ENSGT00510000047872	ENSGT00940000155273	ENSGT00940000165840	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b
Neopterygii	ANCESTRAL SPECIES	67	ENSGT00940000160926	ENSGT00390000012913.a	ENSGT00940000159946	ENSGT00940000161913	ENSGT00390000013841	ENSGT00950000183110.b.a	ENSGT00940000160036	ENSGT00940000159258	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b	ENSGT00940000164686	ENSGT00940000155138	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	72	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.c	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C.c	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155138
Clupeocephala	ANCESTRAL SPECIES	4										ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.B.a.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Otomorpha	ANCESTRAL SPECIES	31								ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777	ENSGT00940000154779.a.a.d
Clupeiformes	ANCESTRAL SPECIES	9	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777	ENSGT00940000154779.a.a.d
Atlantic herring	MODERN SPECIES	1	prdm5 (ENSCHAG00000021298)	ndnf (ENSCHAG00000021283)	CPEB2 (ENSCHAG00000021191)	fbxl5 (ENSCHAG00000021161)	CC2D2A (ENSCHAG00000020750)	C1QTNF7 (ENSCHAG00000020734)	zgc:194221 (ENSCHAG00000020720)	ENSCHAG00000020682	ENSCHAG00000020666	marchf2 (ENSCHAG00000020646)	ENSCHAG00000020582	hnrnpm (ENSCHAG00000019546)	timm44 (ENSCHAG00000020190)	CTXN1 (ENSCHAG00000019520)	fbn2b (ENSCHAG00000016353)	cers4a (ENSCHAG00000016263) ##22	ENSCHAG00000016253	lsm7 (ENSCHAG00000016232)	ENSCHAG00000016219	timm13 (ENSCHAG00000016192)	enc3 (ENSCHAG00000016176)	ARHGEF18 (ENSCHAG00000016034)	insrb (ENSCHAG00000005950)	use1 (ENSCHAG00000005482)	MYO9B (ENSCHAG00000004904)	s1pr4 (ENSCHAG00000004854)	ncln (ENSCHAG00000004644)	CERS1 (ENSCHAG00000004630) ##22	tnfaip8l1 (ENSCHAG00000004596) ##12	mydgf (ENSCHAG00000004580)	loxl5a (ENSCHAG00000004515)
Denticle herring	MODERN SPECIES	4	hapln4 (ENSDCDG00000032416)	tm6sf2b (ENSDCDG00000032415)	SBNO2 (ENSDCDG00000032402)	tjp3 (ENSDCDG00000032292)	ARHGAP45 (ENSDCDG00000031528)	ENSDCDG00000031508	ENSDCDG00000031504	ENSDCDG00000031414	ENSDCDG00000031377	marchf2 (ENSDCDG00000031369)	ENSDCDG00000031365	hnrnpm (ENSDCDG00000031346)	timm44 (ENSDCDG00000031285)	CTXN1 (ENSDCDG00000031272)	fbn2b (ENSDCDG00000028772)	cers4a (ENSDCDG00000028672) ##22	ENSDCDG00000028670	lsm7 (ENSDCDG00000028667)	ENSDCDG00000028657	timm13 (ENSDCDG00000028654)	enc3 (ENSDCDG00000028653)	ARHGEF18 (ENSDCDG00000028647)	insrb (ENSDCDG00000027198)	use1 (ENSDCDG00000027172)	MYO9B (ENSDCDG00000027057)	s1pr4 (ENSDCDG00000027040)	ncln (ENSDCDG00000027020)	CERS1 (ENSDCDG00000027018) ##22	tnfaip8l1 (ENSDCDG00000027016) ##12	mydgf (ENSDCDG00000027013)	loxl5a (ENSDCDG00000027005)
Otophysi	ANCESTRAL SPECIES	3	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000165115.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00940000153617.A.a.a	ENSGT00940000159248	ENSGT00390000008296.a	ENSGT00940000163706	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.d	ENSGT00390000002505	ENSGT00730000111147	ENSGT00940000163917.a.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00970000198139	ENSGT00940000158364.b	ENSGT00940000165007.b	ENSGT00940000154779.a.a.d	ENSGT00390000000777	ENSGT00390000003488.a.b.a ##12	ENSGT01030000234515.b ##22
Characiphysae	ANCESTRAL SPECIES	28	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000165115.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00940000153617.A.a.a.c.a	ENSGT00940000159248.f	ENSGT00390000008296.a	ENSGT00940000163706	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.d	ENSGT00390000002505	ENSGT00730000111147	ENSGT00940000163917.a.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00970000198139	ENSGT00940000158364.b	ENSGT00940000165007.b	ENSGT00940000154779.a.a.d	ENSGT00390000000777	ENSGT00390000003488.a.b.a ##12	ENSGT01030000234515.b ##22
Channel catfish	MODERN SPECIES	1	ENSIPUG00000024932	rpl36 (ENSIPUG00000024935)	LONP1 (ENSIPUG00000024938)	ftsj3 (ENSIPUG00000024942)	LIM2 (ENSIPUG00000024943)	ENSIPUG00000024945	Gipc3 (ENSIPUG00000024947)	TBXA2R (ENSIPUG00000024950)	PTPRS (ENSIPUG00000024952)	kdm4b (ENSIPUG00000024981)	uhrf1 (ENSIPUG00000024984)	ticam1 (ENSIPUG00000024988)	timm44 (ENSIPUG00000024989)	CTXN1 (ENSIPUG00000024991)	fbn2b (ENSIPUG00000024993)	cers4 (ENSIPUG00000024995) ##22	ENSIPUG00000024999	rad23ab (ENSIPUG00000025000)	calr3a (ENSIPUG00000025003)	c10h19orf44 (ENSIPUG00000025007)	cherp (ENSIPUG00000025008)	rx1 (ENSIPUG00000025009)	MATK (ENSIPUG00000025013)	ENSIPUG00000025015	ATCAY (ENSIPUG00000025016)	mibp (ENSIPUG00000025018)	mydgf (ENSIPUG00000025020)	tnfaip8l1 (ENSIPUG00000025021) ##12	ttc39c (ENSIPUG00000025023)	ENSIPUG00000025029	ENSIPUG00000025030
Characiphysae_b	ANCESTRAL SPECIES	25	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000165115.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00940000153617.A.a.a.c.a	ENSGT00940000153617.A.a.a.c.b	ENSGT00940000159248.f	ENSGT00390000008296.a	ENSGT00940000163706	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.d	ENSGT00390000002505	ENSGT00730000111147	ENSGT00940000163917.a.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00970000198139	ENSGT00940000158364.b	ENSGT00940000165007.b	ENSGT00940000154779.a.a.d	ENSGT00390000000777	ENSGT00390000003488.a.b.a ##12	ENSGT01030000234515.b ##22
Characoidei	ANCESTRAL SPECIES	26	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT00940000165115.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00940000153617.A.a.a.d	ENSGT00940000159248.f	ENSGT00390000008296.a	ENSGT00940000163706	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00390000012078.a.a	ENSGT00950000182915.b.b.a.b.d	ENSGT00390000002505	ENSGT00730000111147	ENSGT00940000163917.a.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364.b	ENSGT00940000165007.b	ENSGT00940000154779.a.a.d	ENSGT00390000000777	ENSGT00390000003488.a.b.a ##12	ENSGT01030000234515.b ##22	ENSGT00500000044945.a
Red-bellied piranha	MODERN SPECIES	396											uhrf1 (ENSPNAG00000016453)	ENSPNAG00000016462	timm44 (ENSPNAG00000016707)	CTXN1 (ENSPNAG00000016728)	fbn2b (ENSPNAG00000016951)	cers4a (ENSPNAG00000016987) ##22	ENSPNAG00000017000	rad23ab (ENSPNAG00000017077)	ENSPNAG00000017127	ENSPNAG00000017155	cherp (ENSPNAG00000017179)	ENSPNAG00000017189
Mexicana tetra	MODERN SPECIES	20	LONP1 (ENSAMXG00000021567)	ftsj3 (ENSAMXG00000021571)	lim2.2 (ENSAMXG00000021574)	ENSAMXG00000034594	gipc3 (ENSAMXG00000021581)	tbxa2r (ENSAMXG00000021585)	PTPRS (ENSAMXG00000021586)	ENSAMXG00000041793	ENSAMXG00000030566	kdm4b (ENSAMXG00000021589)	uhrf1 (ENSAMXG00000021593)	ENSAMXG00000025274	timm44 (ENSAMXG00000021595)	CTXN1 (ENSAMXG00000021596)	fbn2b (ENSAMXG00000021616)	cers4a (ENSAMXG00000021631) ##22	ENSAMXG00000021632	rad23ab (ENSAMXG00000021634)	ENSAMXG00000021635	ENSAMXG00000021636	cherp (ENSAMXG00000021637)	rx1 (ENSAMXG00000021639)	MATK (ENSAMXG00000021640)	ENSAMXG00000021641	ATCAY (ENSAMXG00000039401)	mibp (ENSAMXG00000021643)	loxl5a (ENSAMXG00000021644)	mydgf (ENSAMXG00000033685)	tnfaip8l1 (ENSAMXG00000021647) ##12	CERS1 (ENSAMXG00000021648) ##22	ncln (ENSAMXG00000021649)
Electric eel	MODERN SPECIES	157															ENSEEEG00000009944	cers4a (ENSEEEG00000009962) ##22	ENSEEEG00000010043	rad23ab (ENSEEEG00000010046)	ENSEEEG00000010141	cherp (ENSEEEG00000010143)	ENSEEEG00000010147	ENSEEEG00000010149	MATK (ENSEEEG00000010161)	ZFR2 (ENSEEEG00000010349)	ENSEEEG00000010353	ATCAY (ENSEEEG00000010356)	mibp (ENSEEEG00000010357)	ENSEEEG00000010359	ENSEEEG00000010361	mydgf (ENSEEEG00000010363)	tnfaip8l1 (ENSEEEG00000010364) ##12
Cyprinoidei	ANCESTRAL SPECIES	96	ENSGT01050000244814.a.a.b.b.b.a.b	ENSGT01040000240444.A.b.a.b.i.a	ENSGT01040000240444.A.b.a.b.i.b	ENSGT00940000165115.a	ENSGT00390000003420.b	ENSGT01030000234559.a.a.a	ENSGT00940000153617.A.a.a	ENSGT00940000179034	ENSGT01100000263531.G.r.a.a	ENSGT00940000159248	ENSGT00390000008296.a	ENSGT00940000163706	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A.a	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000155273	ENSGT00390000002505	ENSGT00730000111147	ENSGT00940000163917.a.a	ENSGT00940000160775	ENSGT00940000162148	ENSGT00940000158364.b	ENSGT00940000165007.b	ENSGT00940000154779.a.a.d	ENSGT00390000000777	ENSGT00390000003488.a.b.a ##12	ENSGT01030000234515.b ##22	ENSGT00500000044945.a	ENSGT01050000244887.B	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.b.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	390	ENSGT00390000011943.b.r	ENSGT00530000063553.b.a.e	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b.e.a	ENSGT01040000240444.A.b.a.b.i.b	ENSGT00940000165115.a.d	ENSGT00390000003420.b.d	ENSGT01030000234559.a.a.a.b	ENSGT00940000153617.A.a.a.f	ENSGT00940000159248.d.a	ENSGT00390000008296.a.l	ENSGT00940000163706.b	ENSGT00390000000051.a.c	ENSGT00940000154412.C.d.c	ENSGT00950000183158.A.a.b	ENSGT01030000234515.a.b.b.a.a ##22	ENSGT00390000012078.a.a.a	ENSGT01030000234965	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.a.a.a.a.b.b.b.b.b.a.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.a.a.a.a.b.b.b.b.b.a.a.a
Cyprininae_a	ANCESTRAL SPECIES	344	ENSGT00530000063553.b.a.e	ENSGT00550000075004	ENSGT01050000244814.a.a.b.b.b.a.b.e.a	ENSGT01040000240444.A.b.a.b.i.a.b	ENSGT01040000240444.A.b.a.b.i.b	ENSGT00940000165115.a.d	ENSGT00390000003420.b.d	ENSGT01030000234559.a.a.a.b	ENSGT00940000153617.A.a.a.f	ENSGT00940000159248.d.a	ENSGT00390000008296.a.l	ENSGT00940000163706.b	ENSGT00390000000051.a.c	ENSGT00940000154412.C.d.c	ENSGT00950000183158.A.a.b	ENSGT01030000234515.a.b.b.a.a ##22	ENSGT00390000012078.a.a.a	ENSGT00950000182915.b.b.a.b.d	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.a.a.a.a.b.b.b.b.b.a.b	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.a.a.a.a.b.b.b.b.b.a.a.a
Golden-line barbel	MODERN SPECIES	780								ENSSGRG00000032064	ENSSGRG00000032063	kdm4b (ENSSGRG00000032062)	uhrf1 (ENSSGRG00000031743)	ENSSGRG00000031738	timm44 (ENSSGRG00000031324)	CTXN1 (ENSSGRG00000031321)	fbn2b (ENSSGRG00000031320)	cers4a (ENSSGRG00000031319) ##22	rad23ab (ENSSGRG00000031262)	ENSSGRG00000031255	ENSSGRG00000031253	ENSSGRG00000031129
Common carp reference	MODERN SPECIES	5	ftsj3 (ENSCCRG00000031491)	lim2.2 (ENSCCRG00000015563)	ENSCCRG00000077079	gpr35.1 (ENSCCRG00000052772)	ENSCCRG00000065948	gipc3 (ENSCCRG00000059787)	tbxa2r (ENSCCRG00000030539)	ENSCCRG00000056519	ENSCCRG00000081499	kdm4b (ENSCCRG00000044985)	uhrf1 (ENSCCRG00000048034)	ticam1 (ENSCCRG00000068129)	timm44 (ENSCCRG00000016355)	ENSCCRG00000074868	fbn2b (ENSCCRG00000078419)	cers4a (ENSCCRG00000077309) ##22	ENSCCRG00000001153	ENSCCRG00000075199	ENSCCRG00000060148	ENSCCRG00000026290	ENSCCRG00000037137	ENSCCRG00000028646	ENSCCRG00000075516	ENSCCRG00000067870	ENSCCRG00000025128	ENSCCRG00000074303	ENSCCRG00000026192	ENSCCRG00000060338	ENSCCRG00000017462	ENSCCRG00000056217	ENSCCRG00000010454
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3128															ENSCARG00000049621	cers4a (ENSCARG00000049690) ##22	calr3a (ENSCARG00000049729)
Goldfish	MODERN SPECIES	14	ENSCARG00000054551	ENSCARG00000054521	ENSCARG00000054517	ENSCARG00000054512	ENSCARG00000054500	ENSCARG00000054486	ENSCARG00000054473	ENSCARG00000054446	ENSCARG00000054382	ENSCARG00000054373	ENSCARG00000054360	kdm4b (ENSCARG00000054062)	uhrf1 (ENSCARG00000053875)	timm44 (ENSCARG00000053129)	CTXN1 (ENSCARG00000053110)	cers4a (ENSCARG00000051254) ##22	rad23ab (ENSCARG00000051170)	calr3a (ENSCARG00000051121)	ENSCARG00000051109	ENSCARG00000051095	ENSCARG00000051083	ENSCARG00000051076	ENSCARG00000051065	ENSCARG00000016200	ENSCARG00000016196	ENSCARG00000016178	ENSCARG00000016188	ENSCARG00000016156	ENSCARG00000016150	ENSCARG00000016144
Cyprininae	ANCESTRAL SPECIES	358								ENSGT01100000263531.G.r.a.a.a.b.b.a	ENSGT01100000263531.G.r.a.a.a.b.b.b	ENSGT00940000159248.c	ENSGT00390000008296.a.k	ENSGT00940000163706.a	ENSGT00390000000051.a.d	ENSGT00940000154412.C.d.d	ENSGT00950000183158.A.a.a	ENSGT01030000234515.a.b.b.a.b ##22	ENSGT00940000163715.b	ENSGT00390000012078.a.a.b	ENSGT00950000182915.b.b.a.b.d	ENSGT00390000002505	ENSGT00730000111147.b	ENSGT00940000163917.a.a.c	ENSGT00730000111147.a	ENSGT00940000163917.a.a.d	ENSGT00940000160775	ENSGT00940000162148.a.a	ENSGT00940000158364.b.e	ENSGT00940000165007.b.b	ENSGT00940000162148.b	ENSGT00940000158364.b.f	ENSGT00940000165007.b.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3508												ticam1 (ENSCARG00000064035)	timm44 (ENSCARG00000064169)	CTXN1 (ENSCARG00000064886)	fbn2b (ENSCARG00000065071)	cers4a (ENSCARG00000066869) ##22	ENSCARG00000066887	ENSCARG00000066910	ENSCARG00000066919	ENSCARG00000066924	ENSCARG00000066934	ENSCARG00000066966	ENSCARG00000066944	ENSCARG00000066974	ENSCARG00000066983	ENSCARG00000066986	ENSCARG00000066989	ENSCARG00000066997	ENSCARG00000067005	ENSCARG00000067016	ENSCARG00000046916
Goldfish	MODERN SPECIES	2441										kdm4b (ENSCARG00000051402)	uhrf1 (ENSCARG00000050840)	ticam1 (ENSCARG00000050823)	timm44 (ENSCARG00000049895)	CTXN1 (ENSCARG00000049854)	fbn2b (ENSCARG00000049413)	cers4a (ENSCARG00000049317) ##22	ENSCARG00000049296	rad23ab (ENSCARG00000049236)
Cyprininae_a	ANCESTRAL SPECIES	1127																ENSGT01030000234515.a.b.b.a.b ##22	ENSGT00940000155273.f
Common carp reference	MODERN SPECIES	43	gipc3 (ENSCCRG00000052769)	ENSCCRG00000056764	ENSCCRG00000030978	ENSCCRG00000012380	ENSCCRG00000079558	ENSCCRG00000066939	ENSCCRG00000078533	kdm4b (ENSCCRG00000048245)	uhrf1 (ENSCCRG00000048086)	ticam1 (ENSCCRG00000048082)	timm44 (ENSCCRG00000048065)	fbn2b (ENSCCRG00000016415)	ENSCCRG00000074014	ENSCCRG00000071406	ENSCCRG00000064275	cers4a (ENSCCRG00000018102) ##22	ENSCCRG00000075148	ENSCCRG00000001187	ENSCCRG00000037260	ENSCCRG00000036744	ENSCCRG00000029714	ENSCCRG00000000659	ENSCCRG00000081960	ENSCCRG00000071901	ENSCCRG00000039920	cherp (ENSCCRG00000039932)	ENSCCRG00000032149	rx1 (ENSCCRG00000074717)	ENSCCRG00000032140	ENSCCRG00000032130	mibp (ENSCCRG00000032098)
Zebrafish	MODERN SPECIES	14	ENSDARG00000100533	ENSDARG00000110077	gpr35.1 (ENSDARG00000074633)	ENSDARG00000103522	gipc3 (ENSDARG00000053074)	tbxa2r (ENSDARG00000104717)	PTPRS (ENSDARG00000059738)	ENSDARG00000039164	ENSDARG00000059039	kdm4b (ENSDARG00000099675)	uhrf1 (ENSDARG00000103409)	ticam1 (ENSDARG00000102493)	timm44 (ENSDARG00000104771)	CTXN1 (ENSDARG00000098284)	fbn2b (ENSDARG00000098237)	cers4a (ENSDARG00000031387) ##22	ENSDARG00000106298	rad23ab (ENSDARG00000058984)	calr3a (ENSDARG00000103979)	ENSDARG00000092732	ENSDARG00000112301	ENSDARG00000095493	zgc:195170 (ENSDARG00000076264)	ENSDARG00000093574	ENSDARG00000095120	ENSDARG00000095398	ENSDARG00000078519	ENSDARG00000094604	ENSDARG00000071653	ENSDARG00000092513	ENSDARG00000090673
Euteleosteomorpha	ANCESTRAL SPECIES	46										ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.B.a.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Acanthomorphata	ANCESTRAL SPECIES	11	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.B.a.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Euacanthomorphacea	ANCESTRAL SPECIES	9	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913.b	ENSGT00940000165680.A	ENSGT00940000170739	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000163126.a.b	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Percomorphaceae	ANCESTRAL SPECIES	12	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Tiger tail seahorse	MODERN SPECIES	292	nexn (ENSHCOG00000019403)	ENSHCOG00000019501	alkal1 (ENSHCOG00000019536)	IQCA1 (ENSHCOG00000019749)	ENSHCOG00000019774	ENSHCOG00000019791	ENSHCOG00000019838	guk1b (ENSHCOG00000019863)	ENSHCOG00000019873	dmap1 (ENSHCOG00000019899)	hnrnpm (ENSHCOG00000019984)	timm44 (ENSHCOG00000020071)	CTXN1 (ENSHCOG00000020089)	fbn2b (ENSHCOG00000020189)	ENSHCOG00000020203	cers4a (ENSHCOG00000020233) ##22	ENSHCOG00000020250	lsm7 (ENSHCOG00000020252)	ENSHCOG00000000540	timm13 (ENSHCOG00000020307)	enc3 (ENSHCOG00000020311)	ARHGEF18 (ENSHCOG00000000620)	insrb (ENSHCOG00000020384)
Percomorphaceae_B	ANCESTRAL SPECIES	9	ENSGT00940000177473	ENSGT00940000154756.B.v	ENSGT00940000168428.a	ENSGT00940000178390	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478
Percomorphaceae_C	ANCESTRAL SPECIES	8	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Eupercaria	ANCESTRAL SPECIES	8	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Tetraodontidae	ANCESTRAL SPECIES	5	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000155273	ENSGT00390000004877	ENSGT00940000162251	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478
Fugu	MODERN SPECIES	12	tmem47 (ENSTRUG00000017681)	tab3 (ENSTRUG00000017685)	nexn (ENSTRUG00000017690)	ENSTRUG00000017697	alkal1 (ENSTRUG00000026112)	IQCA1 (ENSTRUG00000017703)	ENSTRUG00000026068	ENSTRUG00000029522	guk1b (ENSTRUG00000014041)	RNF220 (ENSTRUG00000027296)	dmap1 (ENSTRUG00000013929)	hnrnpm (ENSTRUG00000013783)	timm44 (ENSTRUG00000013690)	CTXN1 (ENSTRUG00000013685)	fbn2b (ENSTRUG00000012996)	cers4a (ENSTRUG00000012847) ##22	ENSTRUG00000012838	lsm7 (ENSTRUG00000022913)	ENSTRUG00000012735	timm13 (ENSTRUG00000032063)	enc3 (ENSTRUG00000012650)	ARHGEF18 (ENSTRUG00000012535)	insrb (ENSTRUG00000012281)	use1 (ENSTRUG00000019549)	MYO9B (ENSTRUG00000011915)	s1pr4 (ENSTRUG00000011913)	ncln (ENSTRUG00000011791)	CERS1 (ENSTRUG00000011752) ##22	cope (ENSTRUG00000011693)	tnfaip8l1 (ENSTRUG00000029290) ##12	mydgf (ENSTRUG00000011621)
Tetraodon	MODERN SPECIES		ENSTNIG00000015541	ENSTNIG00000015540	cpox (ENSTNIG00000015539)	prrg1 (ENSTNIG00000019762)	tmem47 (ENSTNIG00000015538)	tab3 (ENSTNIG00000015537)	nexn (ENSTNIG00000015536)	ENSTNIG00000015535	zgc:153738 (ENSTNIG00000015534)	ENSTNIG00000015533	guk1b (ENSTNIG00000015532)	dmap1 (ENSTNIG00000015531)	hnrnpm (ENSTNIG00000015530)	timm44 (ENSTNIG00000015529)	fbn2b (ENSTNIG00000015528)	cers4a (ENSTNIG00000015527) ##22	ENSTNIG00000015526	lsm7 (ENSTNIG00000015525)	ENSTNIG00000015524	ENSTNIG00000015523	timm13 (ENSTNIG00000015522)	enc3 (ENSTNIG00000015521)	enc3 (ENSTNIG00000015520)	ARHGEF18 (ENSTNIG00000015519)	insrb (ENSTNIG00000015518)	use1 (ENSTNIG00000015517)	ENSTNIG00000015516	s1pr4 (ENSTNIG00000015515)	ncln (ENSTNIG00000015514)	CERS1 (ENSTNIG00000015513) ##22	cope (ENSTNIG00000015512)
Eupecaria_A	ANCESTRAL SPECIES	11	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Ballan wrasse	MODERN SPECIES	122	ENSLBEG00000004156	alkal1 (ENSLBEG00000004193)	zgc:153738 (ENSLBEG00000004215)	ENSLBEG00000004258	ENSLBEG00000004303	ENSLBEG00000004342	ENSLBEG00000004377	guk1b (ENSLBEG00000004423)	ENSLBEG00000004451	RNF220 (ENSLBEG00000004468)	dmap1 (ENSLBEG00000004484)	hnrnpm (ENSLBEG00000004545)	timm44 (ENSLBEG00000004604)	CTXN1 (ENSLBEG00000004660)	fbn2b (ENSLBEG00000004782)	cers4a (ENSLBEG00000005164) ##22	ENSLBEG00000005177	lsm7 (ENSLBEG00000005203)	ENSLBEG00000005249	timm13 (ENSLBEG00000005369)	enc3 (ENSLBEG00000005380)	ARHGEF18 (ENSLBEG00000005402)	insrb (ENSLBEG00000005467)	use1 (ENSLBEG00000005541)	usf1l (ENSLBEG00000005586)	gna15.4 (ENSLBEG00000005634)	C2CD4C (ENSLBEG00000005647)	cdc34a (ENSLBEG00000005657)	ap3d1 (ENSLBEG00000005725)	hdgfl2 (ENSLBEG00000005864)	fh (ENSLBEG00000005899)
Eupecaria_B	ANCESTRAL SPECIES	10	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Eupecaria_C	ANCESTRAL SPECIES	4	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	3	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
European seabass	MODERN SPECIES	17	prrg1 (ENSDLAG00005027771)	tmem47 (ENSDLAG00005006885)	tab3 (ENSDLAG00005006896)	nexn (ENSDLAG00005006907)	ENSDLAG00005007086	alkal1 (ENSDLAG00005007111)	zgc:153738 (ENSDLAG00005007126)	ENSDLAG00005029309	guk1b (ENSDLAG00005007285)	ENSDLAG00005007340	dmap1 (ENSDLAG00005007370)	ENSDLAG00005007457	timm44 (ENSDLAG00005007613)	ENSDLAG00005027887	ENSDLAG00005008432	cers4a (ENSDLAG00005034667) ##22	ENSDLAG00005009280	ENSDLAG00005027045	timm13 (ENSDLAG00005028836)	enc3 (ENSDLAG00005009313)	ENSDLAG00005009327	insrb (ENSDLAG00005009460)	use1 (ENSDLAG00005028648)	ENSDLAG00005014930	s1pr4 (ENSDLAG00005018036)	ncln (ENSDLAG00005030273)	ENSDLAG00005030951 ##22	ENSDLAG00005018560	tnfaip8l1 (ENSDLAG00005030047) ##12	mydgf (ENSDLAG00005018703)	loxl5a (ENSDLAG00005018726)
Large yellow croaker	MODERN SPECIES	489	prrg1 (ENSLCRG00005021454)	tmem47 (ENSLCRG00005021453)	tab3 (ENSLCRG00005021452)	nexn (ENSLCRG00005021448)	ENSLCRG00005021439	alkal1 (ENSLCRG00005021438)	zgc:153738 (ENSLCRG00005021435)	ENSLCRG00005021433	guk1b (ENSLCRG00005021430)	RNF220 (ENSLCRG00005021424)	dmap1 (ENSLCRG00005021418)	hnrnpm (ENSLCRG00005021403)	timm44 (ENSLCRG00005021177)	ENSLCRG00005021155	fbn2b (ENSLCRG00005021077)	cers4a (ENSLCRG00005021048) ##22	ENSLCRG00005021047	lsm7 (ENSLCRG00005021046)	ENSLCRG00005021045	ENSLCRG00005021042	timm13 (ENSLCRG00005021040)	enc3 (ENSLCRG00005021039)	ENSLCRG00005021038	insrb (ENSLCRG00005019382)	use1 (ENSLCRG00005019347)	MYO9B (ENSLCRG00005019165)	s1pr4 (ENSLCRG00005019151)	ncln (ENSLCRG00005019137)	CERS1 (ENSLCRG00005019135) ##22	cope (ENSLCRG00005019064)	tnfaip8l1 (ENSLCRG00005019057) ##12
Gilthead seabream	MODERN SPECIES	2	tab3 (ENSSAUG00010026975)	nexn (ENSSAUG00010026953)	ENSSAUG00010026946	ENSSAUG00010026941	zgc:153738 (ENSSAUG00010026938)	ENSSAUG00010026935	ENSSAUG00010026933	ENSSAUG00010026930	guk1b (ENSSAUG00010026920)	RNF220 (ENSSAUG00010026908)	dmap1 (ENSSAUG00010026902)	hnrnpm (ENSSAUG00010026894)	timm44 (ENSSAUG00010026893)	CTXN1 (ENSSAUG00010026890)	fbn2b (ENSSAUG00010026868)	cers4a (ENSSAUG00010026854) ##22	ENSSAUG00010026852	lsm7 (ENSSAUG00010026851)	ENSSAUG00010026847	Tim13 (ENSSAUG00010026842)	enc3 (ENSSAUG00010026838)	ARHGEF18 (ENSSAUG00010026833)	insrb (ENSSAUG00010026476)	use1 (ENSSAUG00010026460)	MYO9B (ENSSAUG00010026277)	ncln (ENSSAUG00010026120)	CERS1 (ENSSAUG00010026113) ##22	cope (ENSSAUG00010026111)	tnfaip8l1 (ENSSAUG00010026107) ##12	mydgf (ENSSAUG00010026106)	loxl5a (ENSSAUG00010026104)
Perciformes	ANCESTRAL SPECIES	8	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181.c.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Cottioidei	ANCESTRAL SPECIES	5	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000168181.c.b	ENSGT00940000168181.c.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Lumpfish	MODERN SPECIES	19	ENSCLMG00005022437	ENSCLMG00005022438	ENSCLMG00005022439	zgc:153738 (ENSCLMG00005022442)	ENSCLMG00005022447	ENSCLMG00005022448	ENSCLMG00005022449	guk1b (ENSCLMG00005022450)	ENSCLMG00005022451	dmap1 (ENSCLMG00005022452)	hnrnpm (ENSCLMG00005022453)	timm44 (ENSCLMG00005022460)	CTXN1 (ENSCLMG00005022551)	ENSCLMG00005022552	fbn2b (ENSCLMG00005022553)	cers4a (ENSCLMG00005022557) ##22	ENSCLMG00005022596	lsm7 (ENSCLMG00005022598)	ENSCLMG00005022599	timm13 (ENSCLMG00005022600)	enc3 (ENSCLMG00005022601)	ARHGEF18 (ENSCLMG00005022606)	ENSCLMG00005022612	ENSCLMG00005022613	insrb (ENSCLMG00005022671)	use1 (ENSCLMG00005002825)	MYO9B (ENSCLMG00005003085)	s1pr4 (ENSCLMG00005005694)	ncln (ENSCLMG00005005696)	CERS1 (ENSCLMG00005005714) ##22	cope (ENSCLMG00005005717)
Stickleback	MODERN SPECIES	8	prrg1 (ENSGACG00000010095)	tmem47 (ENSGACG00000010104)	tab3 (ENSGACG00000010107)	nexn (ENSGACG00000010119)	ENSGACG00000010129	zgc:153738 (ENSGACG00000010143)	ENSGACG00000010162	ENSGACG00000010184	guk1b (ENSGACG00000010211)	RNF220 (ENSGACG00000010240)	dmap1 (ENSGACG00000010250)	hnrnpm (ENSGACG00000010265)	timm44 (ENSGACG00000010289)	CTXN1 (ENSGACG00000010319)	fbn2b (ENSGACG00000010321)	cers4a (ENSGACG00000010353) ##22	lsm7 (ENSGACG00000010390)	ENSGACG00000010394	timm13 (ENSGACG00000010398)	enc3 (ENSGACG00000010425)	ENSGACG00000010465	ARHGEF18 (ENSGACG00000010468)	insrb (ENSGACG00000010475)	use1 (ENSGACG00000010489)	MYO9B (ENSGACG00000010494)	s1pr4 (ENSGACG00000010526)	ncln (ENSGACG00000010528)	CERS1 (ENSGACG00000010560) ##22	cope (ENSGACG00000010568)	tnfaip8l1 (ENSGACG00000010593) ##12	ENSGACG00000010610
Perciformes_a	ANCESTRAL SPECIES	6	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181.c.a	ENSGT00940000154067.c	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777	ENSGT00940000154779.a.a.d
Channel bull blenny	MODERN SPECIES	18	ENSCGOG00000013947	ENSCGOG00000013767	ENSCGOG00000013753	ENSCGOG00000013751	ENSCGOG00000013749	EFNA2 (ENSCGOG00000013746)	PTBP1 (ENSCGOG00000013058)	ENSCGOG00000013037	guk1b (ENSCGOG00000012984)	RNF220 (ENSCGOG00000012976)	dmap1 (ENSCGOG00000012828)	hnrnpm (ENSCGOG00000012800)	timm44 (ENSCGOG00000012571)	CTXN1 (ENSCGOG00000012568)	fbn2b (ENSCGOG00000012309)	cers4a (ENSCGOG00000012265) ##22	ENSCGOG00000012261	lsm7 (ENSCGOG00000012255)	ENSCGOG00000012254	ENSCGOG00000012252	timm13 (ENSCGOG00000012245)	enc3 (ENSCGOG00000012243)	ARHGEF18 (ENSCGOG00000012239)	insrb (ENSCGOG00000007810)	use1 (ENSCGOG00000007697)	MYO9B (ENSCGOG00000006491)	s1pr4 (ENSCGOG00000006459)	ENSCGOG00000006455	cope (ENSCGOG00000006264)	tnfaip8l1 (ENSCGOG00000006254) ##12	mydgf (ENSCGOG00000006251)
Pike perch	MODERN SPECIES	21	tab3 (ENSSLUG00000000403)	nexn (ENSSLUG00000000378)	ENSSLUG00000000350	alkal1 (ENSSLUG00000000336)	ENSSLUG00000019423	ENSSLUG00000019418	ENSSLUG00000019407	ENSSLUG00000019405	guk1b (ENSSLUG00000019400)	RNF220 (ENSSLUG00000019397)	dmap1 (ENSSLUG00000019394)	hnrnpm (ENSSLUG00000019376)	timm44 (ENSSLUG00000018913)	CTXN1 (ENSSLUG00000018874)	fbn2b (ENSSLUG00000018814)	cers4a (ENSSLUG00000018794) ##22	lsm7 (ENSSLUG00000018783)	ENSSLUG00000018716	timm13 (ENSSLUG00000018699)	enc3 (ENSSLUG00000018691)	ARHGEF18 (ENSSLUG00000018655)	ENSSLUG00000018641	insrb (ENSSLUG00000014921)	use1 (ENSSLUG00000014764)	MYO9B (ENSSLUG00000013040)	s1pr4 (ENSSLUG00000012993)	CERS1 (ENSSLUG00000012985) ##22	ncln (ENSSLUG00000012944)	CERS1 (ENSSLUG00000012920) ##22	cope (ENSSLUG00000012899)	tnfaip8l1 (ENSSLUG00000012891) ##12
Percomorphaceae_D	ANCESTRAL SPECIES	8	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000168181	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Anabantaria	ANCESTRAL SPECIES	7	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.a	ENSGT00940000177273	ENSGT00940000154756.B.v	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777	ENSGT00940000154779.a.a.d
Zig-zag eel	MODERN SPECIES	18	tab3 (ENSMAMG00000005849)	nexn (ENSMAMG00000005794)	ENSMAMG00000005779	ENSMAMG00000005774	zgc:153738 (ENSMAMG00000005761)	ENSMAMG00000024461	ENSMAMG00000005737	ENSMAMG00000024567	guk1b (ENSMAMG00000005650)	ENSMAMG00000005640	dmap1 (ENSMAMG00000005629)	ENSMAMG00000005612	timm44 (ENSMAMG00000005591)	ENSMAMG00000005576	ENSMAMG00000005472	cers4a (ENSMAMG00000005432) ##22	ENSMAMG00000005414	lsm7 (ENSMAMG00000005410)	ENSMAMG00000005370	timm13 (ENSMAMG00000026432)	enc3 (ENSMAMG00000005355)	ENSMAMG00000005328	insrb (ENSMAMG00000005288)	use1 (ENSMAMG00000005262)	ENSMAMG00000005167	s1pr4 (ENSMAMG00000005150)	ncln (ENSMAMG00000005097)	ENSMAMG00000005082 ##22	ENSMAMG00000005043	tnfaip8l1 (ENSMAMG00000026836) ##12	mydgf (ENSMAMG00000005019)
Anabantoidei	ANCESTRAL SPECIES	6	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.a	ENSGT00940000177273	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777	ENSGT00940000154779.a.a.d
Siamese fighting fish	MODERN SPECIES	15	tmem47 (ENSBSLG00000016436)	tab3 (ENSBSLG00000016433)	nexn (ENSBSLG00000016416)	ENSBSLG00000016405	alkal1 (ENSBSLG00000016399)	zgc:153738 (ENSBSLG00000016381)	ENSBSLG00000016380	ENSBSLG00000016374	guk1b (ENSBSLG00000016365)	RNF220 (ENSBSLG00000016358)	dmap1 (ENSBSLG00000016354)	dmap1 (ENSBSLG00000016340)	hnrnpm (ENSBSLG00000016324)	timm44 (ENSBSLG00000016038)	CTXN1 (ENSBSLG00000016020)	cers4a (ENSBSLG00000015343) ##22	lsm7 (ENSBSLG00000015283)	ENSBSLG00000015212	timm13 (ENSBSLG00000015179)	enc3 (ENSBSLG00000015153)	ARHGEF18 (ENSBSLG00000015047)	insrb (ENSBSLG00000008798)	use1 (ENSBSLG00000008645)	MYO9B (ENSBSLG00000006954)	s1pr4 (ENSBSLG00000005801)	ncln (ENSBSLG00000005664)	CERS1 (ENSBSLG00000005634) ##22	cope (ENSBSLG00000004968)	tnfaip8l1 (ENSBSLG00000004816) ##12	mydgf (ENSBSLG00000004784)	loxl5a (ENSBSLG00000004761)
Climbing perch	MODERN SPECIES	17	prrg1 (ENSATEG00000009411)	tmem47 (ENSATEG00000009400)	tab3 (ENSATEG00000009378)	nexn (ENSATEG00000009343)	ENSATEG00000009328	alkal1 (ENSATEG00000029369)	zgc:153738 (ENSATEG00000009250)	guk1b (ENSATEG00000009187)	ENSATEG00000009183	dmap1 (ENSATEG00000009145)	ENSATEG00000008976	timm44 (ENSATEG00000008853)	ENSATEG00000008845	ENSATEG00000008621	ENSATEG00000027515	cers4a (ENSATEG00000008600) ##22	ENSATEG00000027293	lsm7 (ENSATEG00000026156)	ENSATEG00000008476	timm13 (ENSATEG00000029496)	enc3 (ENSATEG00000008432)	ENSATEG00000008386	insrb (ENSATEG00000008275)	use1 (ENSATEG00000008250)	ENSATEG00000008105	s1pr4 (ENSATEG00000008095)	ncln (ENSATEG00000008012)	ENSATEG00000007989 ##22	ENSATEG00000007929	tnfaip8l1 (ENSATEG00000007914) ##12	mydgf (ENSATEG00000027535)
Carangaria	ANCESTRAL SPECIES	7	ENSGT00390000018244	ENSGT00390000017311	ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000168181	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Carangaria_A	ANCESTRAL SPECIES	3	ENSGT00940000166042.a	ENSGT01090000260051.b.b.dc.a	ENSGT00940000154067.c	ENSGT00940000177273	ENSGT00940000177473	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Barramundi perch	MODERN SPECIES	43	ENSLCAG00010023248	alkal1 (ENSLCAG00010023257)	zgc:153738 (ENSLCAG00010023264)	ENSLCAG00010023276	ENSLCAG00010023277	ENSLCAG00010023280	ENSLCAG00010023288	ENSLCAG00010023293	guk1b (ENSLCAG00010023296)	RNF220 (ENSLCAG00010023298)	dmap1 (ENSLCAG00010023299)	hnrnpm (ENSLCAG00010023305)	timm44 (ENSLCAG00010023382)	CTXN1 (ENSLCAG00010023508)	fbn2b (ENSLCAG00010023593)	cers4a (ENSLCAG00010023874) ##22	ENSLCAG00010023879	lsm7 (ENSLCAG00010023883)	ENSLCAG00010023891	ENSLCAG00010023898	timm13 (ENSLCAG00010023902)	enc3 (ENSLCAG00010023905)	ARHGEF18 (ENSLCAG00010023913)	insrb (ENSLCAG00010024130)	use1 (ENSLCAG00010024635)	MYO9B (ENSLCAG00010024751)	s1pr4 (ENSLCAG00010025015)	ncln (ENSLCAG00010025034)	CERS1 (ENSLCAG00010025066) ##22	cope (ENSLCAG00010025076)	tnfaip8l1 (ENSLCAG00010025088) ##12
Seriola	ANCESTRAL SPECIES		ENSGT00940000158538	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499.j	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000168181	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Greater amberjack	MODERN SPECIES		nexn (ENSSDUG00000002646)	ENSSDUG00000002564	ENSSDUG00000002528	zgc:153738 (ENSSDUG00000002484)	ENSSDUG00000002465	ENSSDUG00000002451	ENSSDUG00000002370	guk1b (ENSSDUG00000002345)	RNF220 (ENSSDUG00000002315)	dmap1 (ENSSDUG00000002281)	hnrnpm (ENSSDUG00000002188)	timm44 (ENSSDUG00000002132)	ENSSDUG00000002122	CTXN1 (ENSSDUG00000002111)	fbn2b (ENSSDUG00000001962)	cers4a (ENSSDUG00000001904) ##22	ENSSDUG00000001881	lsm7 (ENSSDUG00000001863)	ENSSDUG00000001835	timm13 (ENSSDUG00000001818)	enc3 (ENSSDUG00000001809)	ARHGEF18 (ENSSDUG00000001719)	insrb (ENSSDUG00000001593)	use1 (ENSSDUG00000001559)	MYO9B (ENSSDUG00000001469)	s1pr4 (ENSSDUG00000001452)	ncln (ENSSDUG00000001384)	CERS1 (ENSSDUG00000001367) ##22	cope (ENSSDUG00000001320)	tnfaip8l1 (ENSSDUG00000001302) ##12	mydgf (ENSSDUG00000001272)
Yellowtail amberjack	MODERN SPECIES	2246	tab3 (ENSSLDG00000017260)	nexn (ENSSLDG00000017207)	ENSSLDG00000017147	alkal1 (ENSSLDG00000017121)	zgc:153738 (ENSSLDG00000017098)	ENSSLDG00000017082	ENSSLDG00000017018	guk1b (ENSSLDG00000016977)	ENSSLDG00000016966	RNF220 (ENSSLDG00000016933)	dmap1 (ENSSLDG00000016882)	hnrnpm (ENSSLDG00000016713)	timm44 (ENSSLDG00000016573)	CTXN1 (ENSSLDG00000016545)	fbn2b (ENSSLDG00000016403)	cers4a (ENSSLDG00000016360) ##22	ENSSLDG00000016352	lsm7 (ENSSLDG00000016339)	timm13 (ENSSLDG00000016325)	ENSSLDG00000016245	enc3 (ENSSLDG00000016197)	ARHGEF18 (ENSSLDG00000016133)	insrb (ENSSLDG00000016088)	use1 (ENSSLDG00000016051)	ENSSLDG00000016034	s1pr4 (ENSSLDG00000016017)	ncln (ENSSLDG00000015927)	CERS1 (ENSSLDG00000015902) ##22	cope (ENSSLDG00000015863)	tnfaip8l1 (ENSSLDG00000015851) ##12	mydgf (ENSSLDG00000015838)
Pleuronectoidei	ANCESTRAL SPECIES	30	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000155273	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Turbot	MODERN SPECIES	3	tmem47 (ENSSMAG00000003365)	tab3 (ENSSMAG00000003398)	nexn (ENSSMAG00000003429)	ENSSMAG00000003515	alkal1 (ENSSMAG00000003554)	ENSSMAG00000003615	ENSSMAG00000003849	ENSSMAG00000003886	guk1b (ENSSMAG00000003901)	ENSSMAG00000003928	ENSSMAG00000003948	dmap1 (ENSSMAG00000003952)	ENSSMAG00000003992	ENSSMAG00000004030	ENSSMAG00000022554	ENSSMAG00000004045 ##22	ENSSMAG00000004184	lsm7 (ENSSMAG00000004195)	ENSSMAG00000004210	timm13 (ENSSMAG00000004298)	enc3 (ENSSMAG00000004360)	ENSSMAG00000004408	ENSSMAG00000029449	insrb (ENSSMAG00000004638)	use1 (ENSSMAG00000004710)	ENSSMAG00000004758	s1pr4 (ENSSMAG00000005123)	ncln (ENSSMAG00000005136)	ENSSMAG00000005198 ##22	ENSSMAG00000005216	tnfaip8l1 (ENSSMAG00000031021) ##12
Tongue sole	MODERN SPECIES	11	ncl (ENSCSEG00000015089)	nppc (ENSCSEG00000015075)	ENSCSEG00000015070	alpi.1 (ENSCSEG00000015058)	alpi.2 (ENSCSEG00000015050)	ENSCSEG00000015038	nr5a2 (ENSCSEG00000015019)	dmap1 (ENSCSEG00000015009)	hnrnpm (ENSCSEG00000014980)	timm44 (ENSCSEG00000014962)	CTXN1 (ENSCSEG00000014957)	ENSCSEG00000014952	ENSCSEG00000014942	ENSCSEG00000014928	ENSCSEG00000014916	cers4a (ENSCSEG00000014909) ##22	lsm7 (ENSCSEG00000014900)	ENSCSEG00000014893	ENSCSEG00000014886	timm13 (ENSCSEG00000014883)	enc3 (ENSCSEG00000014875)	RNF220 (ENSCSEG00000014870)	guk1b (ENSCSEG00000014852)	ENSCSEG00000014817	ENSCSEG00000014812	ENSCSEG00000014806	ENSCSEG00000014801	ENSCSEG00000014791	ENSCSEG00000014777	zgc:153738 (ENSCSEG00000014764)	ENSCSEG00000014758
Ovalentaria	ANCESTRAL SPECIES	9	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT01030000239658	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT01030000235960	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478
Atherinomorphae	ANCESTRAL SPECIES	7	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478
Cyprinodontiformes	ANCESTRAL SPECIES	7	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478
Aplocheiloidei	ANCESTRAL SPECIES	3	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Turquoise killifish	MODERN SPECIES	1626	TMEM47 (ENSNFUG00015025426)	TAB3 (ENSNFUG00015025427)	nexn (ENSNFUG00015025428)	ENSNFUG00015025429	ENSNFUG00015025430	IQCA1 (ENSNFUG00015025431)	ENSNFUG00015025432	guk1b (ENSNFUG00015025433)	RNF220 (ENSNFUG00015025434)	ENSNFUG00015025435	DMAP1 (ENSNFUG00015025436)	hnrnpm (ENSNFUG00015025437)	timm44 (ENSNFUG00015025438)	CTXN1 (ENSNFUG00015025439)	fbn2b (ENSNFUG00015025440)	cers4a (ENSNFUG00015025441) ##22	ENSNFUG00015025442	lsm7 (ENSNFUG00015025443)	ENSNFUG00015025444	ENSNFUG00015025445	timm13 (ENSNFUG00015025446)	ENC1L (ENSNFUG00015025447)	ARHGEF18 (ENSNFUG00015025449)	INSRB (ENSNFUG00015025450)	ENSNFUG00015025451	USE1 (ENSNFUG00015025452)	MYO9B (ENSNFUG00015025453)	s1pr4 (ENSNFUG00015025454)	ENSNFUG00015025455	ncln (ENSNFUG00015025458)	CERS1 (ENSNFUG00015025459) ##22
Mangrove rivulus	MODERN SPECIES	8	nexn (ENSKMAG00000022115)	ENSKMAG00000022119	alkal1 (ENSKMAG00000022122)	zgc:153738 (ENSKMAG00000022125)	ENSKMAG00000022127	ENSKMAG00000022129	ENSKMAG00000022130	guk1b (ENSKMAG00000022132)	ENSKMAG00000022133	RNF220 (ENSKMAG00000022134)	dmap1 (ENSKMAG00000022135)	hnrnpm (ENSKMAG00000022136)	timm44 (ENSKMAG00000022137)	CTXN1 (ENSKMAG00000022142)	fbn2b (ENSKMAG00000022145)	cers4a (ENSKMAG00000022149) ##22	ENSKMAG00000022150	lsm7 (ENSKMAG00000022151)	ENSKMAG00000022152	ENSKMAG00000022153	timm13 (ENSKMAG00000022156)	enc3 (ENSKMAG00000022158)	ARHGEF18 (ENSKMAG00000022161)	insrb (ENSKMAG00000022163)	use1 (ENSKMAG00000022165)	MYO9B (ENSKMAG00000022167)	s1pr4 (ENSKMAG00000022170)	ncln (ENSKMAG00000022175)	CERS1 (ENSKMAG00000022179) ##22	cope (ENSKMAG00000022180)	tnfaip8l1 (ENSKMAG00000022183) ##12
Cyprinodontoidei	ANCESTRAL SPECIES	10	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Poeciliinae	ANCESTRAL SPECIES	7	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.b	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Poecilia	ANCESTRAL SPECIES	1	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.b	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
NAME_6	ANCESTRAL SPECIES	19	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000168181	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.b	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Amazon molly	MODERN SPECIES	303	prrg1 (ENSPFOG00000014309)	tmem47 (ENSPFOG00000014295)	tab3 (ENSPFOG00000014274)	nexn (ENSPFOG00000014196)	ENSPFOG00000014169	alkal1 (ENSPFOG00000021789)	IQCA1 (ENSPFOG00000014080)	ENSPFOG00000013946	guk1b (ENSPFOG00000013888)	RNF220 (ENSPFOG00000013774)	dmap1 (ENSPFOG00000013730)	hnrnpm (ENSPFOG00000013612)	timm44 (ENSPFOG00000013565)	CTXN1 (ENSPFOG00000020001)	fbn2b (ENSPFOG00000012783)	cers4a (ENSPFOG00000012524) ##22	ENSPFOG00000012496	lsm7 (ENSPFOG00000012467)	ENSPFOG00000012424	timm13 (ENSPFOG00000012405)	ENSPFOG00000020000	enc3 (ENSPFOG00000012378)	ARHGEF18 (ENSPFOG00000012251)	ENSPFOG00000012136	insrb (ENSPFOG00000011513)	use1 (ENSPFOG00000011442)	MYO9B (ENSPFOG00000011070)	s1pr4 (ENSPFOG00000019999)	ncln (ENSPFOG00000010844)	CERS1 (ENSPFOG00000010753) ##22	cope (ENSPFOG00000010691)
Sailfin molly	MODERN SPECIES	645											dmap1 (ENSPLAG00000011015)	hnrnpm (ENSPLAG00000011139)	timm44 (ENSPLAG00000011172)	CTXN1 (ENSPLAG00000011181)	fbn2b (ENSPLAG00000011360)	cers4a (ENSPLAG00000011373) ##22	ENSPLAG00000011389	lsm7 (ENSPLAG00000000252)	ENSPLAG00000011454	timm13 (ENSPLAG00000011464)	enc3 (ENSPLAG00000011472)
Guppy	MODERN SPECIES	456	IQCA1 (ENSPREG00000015897)	ENSPREG00000015940	ENSPREG00000015960	ENSPREG00000015977	ENSPREG00000015987	ENSPREG00000016001	guk1b (ENSPREG00000016011)	ENSPREG00000016040	RNF220 (ENSPREG00000016057)	dmap1 (ENSPREG00000016078)	hnrnpm (ENSPREG00000016114)	timm44 (ENSPREG00000016196)	CTXN1 (ENSPREG00000016283)	ENSPREG00000016329	ENSPREG00000016552	cers4a (ENSPREG00000016605) ##22	ENSPREG00000016703	lsm7 (ENSPREG00000016718)	ENSPREG00000016734	timm13 (ENSPREG00000016743)	enc3 (ENSPREG00000016753)	ARHGEF18 (ENSPREG00000016800)	ENSPREG00000016870	use1 (ENSPREG00000016894)	MYO9B (ENSPREG00000017023)	s1pr4 (ENSPREG00000017375)	ncln (ENSPREG00000017424)	CERS1 (ENSPREG00000017449) ##22	ENSPREG00000017472	cope (ENSPREG00000017488)	tnfaip8l1 (ENSPREG00000017508) ##12
Platyfish	MODERN SPECIES	23	ENSXMAG00000022590	ENSXMAG00000023498	ENSXMAG00000020898	ENSXMAG00000025783	ENSXMAG00000027607	guk1b (ENSXMAG00000018473)	ENSXMAG00000018478	dmap1 (ENSXMAG00000018492)	hnrnpm (ENSXMAG00000018502)	timm44 (ENSXMAG00000018511)	CTXN1 (ENSXMAG00000019960)	ENSXMAG00000026777	ENSXMAG00000022955	ENSXMAG00000021484	ENSXMAG00000029730	cers4a (ENSXMAG00000028396) ##22	ENSXMAG00000018626	lsm7 (ENSXMAG00000018630)	ENSXMAG00000018631	timm13 (ENSXMAG00000022411)	enc3 (ENSXMAG00000018635)	ARHGEF18 (ENSXMAG00000018641)	insrb (ENSXMAG00000018648)	use1 (ENSXMAG00000022582)	MYO9B (ENSXMAG00000018704)	s1pr4 (ENSXMAG00000021378)	ncln (ENSXMAG00000018708)	CERS1 (ENSXMAG00000018726) ##22	cope (ENSXMAG00000018730)	tnfaip8l1 (ENSXMAG00000018738) ##12	mydgf (ENSXMAG00000028233)
NAME_4	ANCESTRAL SPECIES	17	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000155273	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000181720	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Sheepshead minnow	MODERN SPECIES	142	prrg1 (ENSCVAG00000020507)	tmem47 (ENSCVAG00000020521)	tab3 (ENSCVAG00000020548)	nexn (ENSCVAG00000020621)	ENSCVAG00000020634	alkal1 (ENSCVAG00000020641)	ENSCVAG00000020681	ENSCVAG00000020698	guk1b (ENSCVAG00000020727)	RNF220 (ENSCVAG00000020747)	dmap1 (ENSCVAG00000020823)	hnrnpm (ENSCVAG00000020838)	timm44 (ENSCVAG00000020856)	CTXN1 (ENSCVAG00000020871)	fbn2b (ENSCVAG00000021044)	cers4a (ENSCVAG00000021056) ##22	ENSCVAG00000021074	lsm7 (ENSCVAG00000021091)	ENSCVAG00000021461	timm13 (ENSCVAG00000021490)	enc3 (ENSCVAG00000021503)	ARHGEF18 (ENSCVAG00000021523)	ENSCVAG00000021533	insrb (ENSCVAG00000021557)	use1 (ENSCVAG00000021584)	MYO9B (ENSCVAG00000021647)	s1pr4 (ENSCVAG00000021655)	ncln (ENSCVAG00000021714)	CERS1 (ENSCVAG00000021722) ##22	cope (ENSCVAG00000021751)	tnfaip8l1 (ENSCVAG00000021771) ##12
Mummichog	MODERN SPECIES	2394	nexn (ENSFHEG00000007103)	ENSFHEG00000007077	alkal1 (ENSFHEG00000007065)	ENSFHEG00000007061	ENSFHEG00000007040	ENSFHEG00000007021	ENSFHEG00000007009	guk1b (ENSFHEG00000006991)	RNF220 (ENSFHEG00000006727)	hnrnpm (ENSFHEG00000006712)	dmap1 (ENSFHEG00000006666)	timm44 (ENSFHEG00000006601)	CTXN1 (ENSFHEG00000006587)	fbn2b (ENSFHEG00000006574)	ENSFHEG00000006386	cers4a (ENSFHEG00000006377) ##22	ENSFHEG00000006356	lsm7 (ENSFHEG00000006349)	ENSFHEG00000006334	ENSFHEG00000006276	timm13 (ENSFHEG00000006257)	enc3 (ENSFHEG00000006243)	ARHGEF18 (ENSFHEG00000006212)	ENSFHEG00000005998	insrb (ENSFHEG00000005985)	use1 (ENSFHEG00000005919)	ENSFHEG00000005910	MYO9B (ENSFHEG00000005893)	s1pr4 (ENSFHEG00000005776)	ncln (ENSFHEG00000005759)	CERS1 (ENSFHEG00000000880) ##22
Oryzias	ANCESTRAL SPECIES	5	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT01030000235960	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a.h ##12
Oryzias_b	ANCESTRAL SPECIES	15	ENSGT00530000063484.b.b.d.a	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.b.b	ENSGT00940000168428.b.a	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a.h ##12	ENSGT00390000000777
Indian medaka	MODERN SPECIES	13	ENSOMEG00000000333	ENSOMEG00000013333	ENSOMEG00000013299	guk1b (ENSOMEG00000013267)	RNF220 (ENSOMEG00000013214)	dmap1 (ENSOMEG00000000330)	hnrnpm (ENSOMEG00000013075)	timm44 (ENSOMEG00000013003)	CTXN1 (ENSOMEG00000012973)	ENSOMEG00000012960	ENSOMEG00000012931	ENSOMEG00000012925	ENSOMEG00000012914	ENSOMEG00000012891	ENSOMEG00000012879	cers4a (ENSOMEG00000012858) ##22	ENSOMEG00000012817	lsm7 (ENSOMEG00000012806)	ENSOMEG00000012764	timm13 (ENSOMEG00000012645)	enc3 (ENSOMEG00000012634)	ARHGEF18 (ENSOMEG00000012588)	insrb (ENSOMEG00000000314)	use1 (ENSOMEG00000012330)	ENSOMEG00000012309	s1pr4 (ENSOMEG00000012290)	ncln (ENSOMEG00000012264)	CERS1 (ENSOMEG00000012203) ##22	cope (ENSOMEG00000012167)	tnfaip8l1 (ENSOMEG00000012123) ##12	mydgf (ENSOMEG00000012113)
Javanese ricefish	MODERN SPECIES	18	prrg1 (ENSOJAG00000021368)	tmem47 (ENSOJAG00000021363)	tab3 (ENSOJAG00000021357)	ENSOJAG00000021254	alkal1 (ENSOJAG00000021245)	zgc:153738 (ENSOJAG00000021199)	ENSOJAG00000021187	ENSOJAG00000021176	guk1b (ENSOJAG00000021142)	RNF220 (ENSOJAG00000021134)	dmap1 (ENSOJAG00000021112)	hnrnpm (ENSOJAG00000021087)	timm44 (ENSOJAG00000021063)	CTXN1 (ENSOJAG00000021054)	fbn2b (ENSOJAG00000020033)	cers4a (ENSOJAG00000019952) ##22	lsm7 (ENSOJAG00000019931)	ENSOJAG00000019919	ENSOJAG00000019908	ENSOJAG00000019896	timm13 (ENSOJAG00000019883)	enc3 (ENSOJAG00000019874)	ENSOJAG00000019716	insrb (ENSOJAG00000018677)	use1 (ENSOJAG00000018599)	s1pr4 (ENSOJAG00000016869)	ncln (ENSOJAG00000016226)	CERS1 (ENSOJAG00000016185) ##22	cope (ENSOJAG00000016051)	tnfaip8l1 (ENSOJAG00000016024) ##12	mydgf (ENSOJAG00000016018)
Oryzias_a	ANCESTRAL SPECIES	14	ENSGT00940000159499	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000168428.b.a	ENSGT00940000154756.B.v	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT01030000235960	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00390000008279.b	ENSGT00950000183049.C.a.a	ENSGT00940000156705	ENSGT00940000155914.c.a	ENSGT00390000013515	ENSGT00390000006337	ENSGT00940000159808	ENSGT00390000006809
Japanese Medaka HdrR	MODERN SPECIES	18	ENSORLG00000024022	alkal1 (ENSORLG00000005531)	IQCA1 (ENSORLG00000005527)	ENSORLG00000026776	ENSORLG00000005498	ENSORLG00000026704	ENSORLG00000028667	guk1b (ENSORLG00000005472)	ENSORLG00000005449	dmap1 (ENSORLG00000005421)	hnrnpm (ENSORLG00000005400)	timm44 (ENSORLG00000005377)	CTXN1 (ENSORLG00000005358)	fbn2b (ENSORLG00000005344)	ENSORLG00000005166	cers4a (ENSORLG00000005206) ##22	lsm7 (ENSORLG00000023951)	ENSORLG00000023312	ENSORLG00000005158	timm13 (ENSORLG00000024730)	enc3 (ENSORLG00000005152)	arhgef18b (ENSORLG00000028828)	tmem59l (ENSORLG00000028151)	ssbp4 (ENSORLG00000005123)	fkbp8 (ENSORLG00000005099)	ell (ENSORLG00000005084)	DOT1L (ENSORLG00000005068)	amh (ENSORLG00000005044)	oaz1a (ENSORLG00000005036)	org (ENSORLG00000025930)	lingo3a (ENSORLG00000005032)
Chinese medaka	MODERN SPECIES	256														CTXN1 (ENSOSIG00000010386)	ENSOSIG00000010385	cers4a (ENSOSIG00000010381) ##22	ENSOSIG00000010379	lsm7 (ENSOSIG00000010378)	ENSOSIG00000010375	ENSOSIG00000010374	timm13 (ENSOSIG00000010372)	enc3 (ENSOSIG00000010370)	ARHGEF18 (ENSOSIG00000010356)	tmem59l (ENSOSIG00000010351)
Ovalentaria_B	ANCESTRAL SPECIES	8	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Cichlidae	ANCESTRAL SPECIES	17	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Pseudocrenilabrinae	ANCESTRAL SPECIES	10	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	26	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000177117	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
Haplochromini	ANCESTRAL SPECIES	16	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.u.a	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Burton s mouthbrooder	MODERN SPECIES	394	ENSHBUG00000023170	ENSHBUG00000023189	zgc:153738 (ENSHBUG00000023231)	ENSHBUG00000023247	ENSHBUG00000023275	guk1b (ENSHBUG00000023326)	RNF220 (ENSHBUG00000023350)	dmap1 (ENSHBUG00000023390)	hnrnpm (ENSHBUG00000023451)	timm44 (ENSHBUG00000023470)	CTXN1 (ENSHBUG00000023484)	ENSHBUG00000023539	ENSHBUG00000023570	ENSHBUG00000023592	ENSHBUG00000000724	cers4a (ENSHBUG00000004592) ##22	ENSHBUG00000004610	lsm7 (ENSHBUG00000004616)	timm13 (ENSHBUG00000004633)	ENSHBUG00000004650	ENSHBUG00000004671	enc3 (ENSHBUG00000004684)	ARHGEF18 (ENSHBUG00000004734)	insrb (ENSHBUG00000004766)	use1 (ENSHBUG00000004811)	MYO9B (ENSHBUG00000004905)	s1pr4 (ENSHBUG00000004919)	ncln (ENSHBUG00000005001)	CERS1 (ENSHBUG00000005009) ##22	cope (ENSHBUG00000005056)	tnfaip8l1 (ENSHBUG00000005068) ##12
Haplochromini_A	ANCESTRAL SPECIES	15	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.u.a	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000154756.B.v	ENSGT00940000168428.b.a	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.u.a	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Haplochromini_B	ANCESTRAL SPECIES	10	ENSGT00730000111176	ENSGT00940000159600	ENSGT00940000159969.a	ENSGT00940000154067.c	ENSGT00940000154756.B.v	ENSGT00940000168428.b.b.b	ENSGT00940000177273	ENSGT00940000167421	ENSGT00940000155815.p	ENSGT00390000016573.c.a	ENSGT00390000016466	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c	ENSGT00940000155404.i.b	ENSGT00390000014361	ENSGT00940000156845.u.a	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12	ENSGT00390000000777
Zebra mbuna	MODERN SPECIES	135																ENSMZEG00005028057 ##22	ENSMZEG00005028056	lsm7 (ENSMZEG00005028055)	ENSMZEG00005028054	timm13 (ENSMZEG00005028053)	ENSMZEG00005028052	ARHGEF18 (ENSMZEG00005028050)	enc3 (ENSMZEG00005028049)	insrb (ENSMZEG00005028048)	ENSMZEG00005028047
Eastern happy	MODERN SPECIES	14	nexn (ENSACLG00000020196)	ENSACLG00000020213	alkal1 (ENSACLG00000020242)	zgc:153738 (ENSACLG00000020261)	ENSACLG00000020369	ENSACLG00000020395	ENSACLG00000020402	ENSACLG00000020415	guk1b (ENSACLG00000020424)	RNF220 (ENSACLG00000020448)	dmap1 (ENSACLG00000020455)	hnrnpm (ENSACLG00000020495)	timm44 (ENSACLG00000020675)	CTXN1 (ENSACLG00000020707)	fbn2b (ENSACLG00000020763)	cers4a (ENSACLG00000020931) ##22	lsm7 (ENSACLG00000021021)	ENSACLG00000021095	ENSACLG00000021120	timm13 (ENSACLG00000021201)	ENSACLG00000021213	enc3 (ENSACLG00000021240)	ARHGEF18 (ENSACLG00000021252)	insrb (ENSACLG00000021318)	use1 (ENSACLG00000021469)	MYO9B (ENSACLG00000021513)	s1pr4 (ENSACLG00000021610)	ncln (ENSACLG00000021634)	CERS1 (ENSACLG00000021733) ##22	cope (ENSACLG00000021749)	tnfaip8l1 (ENSACLG00000021825) ##12
P. nyererei	MODERN SPECIES	478	nexn (ENSPNYG00000006090)	ENSPNYG00000006167	alkal1 (ENSPNYG00000006204)	zgc:153738 (ENSPNYG00000006235)	ENSPNYG00000006303	ENSPNYG00000006328	ENSPNYG00000006350	ENSPNYG00000006384	guk1b (ENSPNYG00000006461)	RNF220 (ENSPNYG00000006482)	dmap1 (ENSPNYG00000006495)	hnrnpm (ENSPNYG00000006542)	timm44 (ENSPNYG00000006701)	CTXN1 (ENSPNYG00000006736)	fbn2b (ENSPNYG00000006768)	cers4a (ENSPNYG00000006898) ##22	ENSPNYG00000006923	lsm7 (ENSPNYG00000006938)	ENSPNYG00000006986	timm13 (ENSPNYG00000007215)	enc3 (ENSPNYG00000007231)	ARHGEF18 (ENSPNYG00000007253)	insrb (ENSPNYG00000007318)	use1 (ENSPNYG00000007375)	MYO9B (ENSPNYG00000007412)	s1pr4 (ENSPNYG00000007509)	ncln (ENSPNYG00000007548)	CERS1 (ENSPNYG00000007584) ##22	cope (ENSPNYG00000007615)	tnfaip8l1 (ENSPNYG00000007660) ##12	mydgf (ENSPNYG00000007672)
Lyretail cichlid	MODERN SPECIES	390	ENSNBRG00000016265	alkal1 (ENSNBRG00000016237)	zgc:153738 (ENSNBRG00000016211)	ENSNBRG00000016180	ENSNBRG00000016165	ENSNBRG00000016148	ENSNBRG00000016138	guk1b (ENSNBRG00000016119)	RNF220 (ENSNBRG00000016103)	dmap1 (ENSNBRG00000016076)	hnrnpm (ENSNBRG00000015999)	timm44 (ENSNBRG00000015975)	CTXN1 (ENSNBRG00000015968)	ENSNBRG00000015944	ENSNBRG00000015836	cers4a (ENSNBRG00000015790) ##22	ENSNBRG00000015780	lsm7 (ENSNBRG00000015770)	ENSNBRG00000015760	ENSNBRG00000015708	timm13 (ENSNBRG00000015631)	enc3 (ENSNBRG00000015614)	ARHGEF18 (ENSNBRG00000015464)	insrb (ENSNBRG00000015391)	ENSNBRG00000015369	use1 (ENSNBRG00000015351)	ENSNBRG00000015344	s1pr4 (ENSNBRG00000015337)	ncln (ENSNBRG00000015281)	ENSNBRG00000015253 ##22	cope (ENSNBRG00000015227)
Nile tilapia	MODERN SPECIES	14	tab3 (ENSONIG00000001728)	nexn (ENSONIG00000001730)	mindy4 (ENSONIG00000001734)	alkal1 (ENSONIG00000001740)	zgc:153738 (ENSONIG00000001741)	ENSONIG00000029077	ENSONIG00000034952	ENSONIG00000040351	guk1b (ENSONIG00000001750)	ENSONIG00000034651	RNF220 (ENSONIG00000001753)	dmap1 (ENSONIG00000001756)	hnrnpm (ENSONIG00000001758)	timm44 (ENSONIG00000001772)	CTXN1 (ENSONIG00000020816)	cers4a (ENSONIG00000001795) ##22	lsm7 (ENSONIG00000001801)	ENSONIG00000001803	ENSONIG00000001805	timm13 (ENSONIG00000031033)	enc3 (ENSONIG00000001808)	ARHGEF18 (ENSONIG00000001810)	insrb (ENSONIG00000001811)	use1 (ENSONIG00000001829)	MYO9B (ENSONIG00000001830)	s1pr4 (ENSONIG00000001832)	ENSONIG00000036656	ncln (ENSONIG00000001833)	CERS1 (ENSONIG00000001845) ##22	cope (ENSONIG00000001847)	tnfaip8l1 (ENSONIG00000037367) ##12
Midas cichlid	MODERN SPECIES	46	tab3 (ENSACIG00000012305)	nexn (ENSACIG00000012274)	ENSACIG00000012246	alkal1 (ENSACIG00000012220)	ENSACIG00000012180	ENSACIG00000012168	ENSACIG00000012114	ENSACIG00000012044	guk1b (ENSACIG00000012028)	RNF220 (ENSACIG00000012014)	dmap1 (ENSACIG00000011992)	hnrnpm (ENSACIG00000011870)	timm44 (ENSACIG00000011801)	CTXN1 (ENSACIG00000011795)	fbn2b (ENSACIG00000011658)	cers4a (ENSACIG00000011621) ##22	ENSACIG00000011607
Pomacentridae	ANCESTRAL SPECIES	223															ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a
Pomacentridae_A	ANCESTRAL SPECIES	241														ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a
Amphiprion	ANCESTRAL SPECIES	70	ENSGT00390000012166.k	ENSGT00390000012166.l	ENSGT00940000174387	ENSGT00940000164178	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000179641	ENSGT00950000182879.a.b.a.b.a.a	ENSGT00950000182879.a.b.a.b.a.b	ENSGT00950000182879.a.b.a.a.a.g.b	ENSGT00950000182879.a.b.a.a.a.g.a.b	ENSGT00950000182879.a.b.a.a.a.g.a.a.a	ENSGT00940000154412.C.c.b	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00510000047872	ENSGT00940000159993	ENSGT00940000155138	ENSGT00390000014000	ENSGT00950000182983.B.a.a
Orange clownfish	MODERN SPECIES	11	ENSAPEG00000024247	ENSAPEG00000024254	ENSAPEG00000024256	ENSAPEG00000024260	XCR1 (ENSAPEG00000024272)	FYCO1 (ENSAPEG00000024287)	GHRHR (ENSAPEG00000024321)	ENSAPEG00000024345	ENSAPEG00000024351	ENSAPEG00000024361	ENSAPEG00000024375	ENSAPEG00000024380	ENSAPEG00000024384	CTXN1 (ENSAPEG00000024387)	fbn2b (ENSAPEG00000024403)	cers4a (ENSAPEG00000024438) ##22	lsm7 (ENSAPEG00000024447)	ENSAPEG00000024453	ENSAPEG00000024461	ENSAPEG00000024470	timm13 (ENSAPEG00000024492)	enc3 (ENSAPEG00000024496)	enc3 (ENSAPEG00000024507)	timm13 (ENSAPEG00000024511)	ENSAPEG00000000302	lsm7 (ENSAPEG00000000694)	ENSAPEG00000000734	ENSAPEG00000000805	insrb (ENSAPEG00000000991)	use1 (ENSAPEG00000001100)	MYO9B (ENSAPEG00000001154)
Clown anemonefish	MODERN SPECIES	973																cers4a (ENSAOCG00000015535) ##22	ENSAOCG00000015546	lsm7 (ENSAOCG00000001077)	thrap3b (ENSAOCG00000015572)	eva1bb (ENSAOCG00000015588)	LSM10 (ENSAOCG00000015607)	LSM10 (ENSAOCG00000015618)
Spiny chromis	MODERN SPECIES	972														CTXN1 (ENSAPOG00000015095)	fbn2b (ENSAPOG00000015388)	cers4a (ENSAPOG00000015416) ##22	ENSAPOG00000015437	lsm7 (ENSAPOG00000015573)	ENSAPOG00000015713	timm13 (ENSAPOG00000015737)	enc3 (ENSAPOG00000015755)
Bicolor damselfish	MODERN SPECIES	2209																cers4a (ENSSPAG00000015169) ##22	lsm7 (ENSSPAG00000015221)	ENSSPAG00000015248	ENSSPAG00000015265	ENSSPAG00000015275	timm13 (ENSSPAG00000015296)	enc3 (ENSSPAG00000015305)
Pinecone sodierfish	MODERN SPECIES	18	tm6sf2b (ENSMMDG00005015173)	SBNO2 (ENSMMDG00005015169)	tjp3 (ENSMMDG00005014918)	ARHGAP45 (ENSMMDG00005011391)	POLR2E (ENSMMDG00005011297)	ENSMMDG00005011293	ENSMMDG00005011292	PIP5K1C (ENSMMDG00005011290)	ENSMMDG00005011287	marchf2 (ENSMMDG00005011285)	ENSMMDG00005011283	hnrnpm (ENSMMDG00005011253)	timm44 (ENSMMDG00005011188)	CTXN1 (ENSMMDG00005011180)	fbn2b (ENSMMDG00005010538)	cers4a (ENSMMDG00005010450) ##22	lsm7 (ENSMMDG00005010441)	ENSMMDG00005010439	timm13 (ENSMMDG00005010433)	enc3 (ENSMMDG00005010431)	ARHGEF18 (ENSMMDG00005010427)	insrb (ENSMMDG00005010402)	use1 (ENSMMDG00005010388)	MYO9B (ENSMMDG00005006005)	s1pr4 (ENSMMDG00005005872)	ncln (ENSMMDG00005005859)	ENSMMDG00005005846	CERS1 (ENSMMDG00005005838) ##22	cope (ENSMMDG00005005736)	tnfaip8l1 (ENSMMDG00005005726) ##12	mydgf (ENSMMDG00005005721)
Cod	MODERN SPECIES	46																ENSGMOG00000006529 ##22	ENSGMOG00000037208
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES	13	ENSGT00390000012913.a.b.c	ENSGT00940000159946	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841.db.b	ENSGT00940000161913.b	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a.b	ENSGT00940000154595	ENSGT00390000000051.a	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00940000163715.b	ENSGT00940000159993	ENSGT01030000235960	ENSGT00390000014000	ENSGT00940000165636.d	ENSGT00390000007212	ENSGT00390000012434	ENSGT00950000182993.A.a.i	ENSGT00940000158588	ENSGT00390000005338	ENSGT00900000141362.a.b	ENSGT00940000165287.a.b	ENSGT00940000160888	ENSGT01030000235192	ENSGT00940000159972
Salmoninae	ANCESTRAL SPECIES	11	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000170739	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib	ENSGT00390000000051.a.b	ENSGT00940000154412.C.d.a	ENSGT00950000183158.A.e.a	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00990000208947	ENSGT00390000014000.c	ENSGT00390000007212.d	ENSGT00390000012434.a	ENSGT00950000182993.A.a.i.c	ENSGT00940000158588.d.a.b	ENSGT00390000005338.a	ENSGT00900000141362.a.b.b	ENSGT00940000160888.d	ENSGT01030000235192.d	ENSGT00940000159972.i.b	ENSGT00390000002877.g	ENSGT00940000161678.eb	ENSGT00940000157246.b.a	ENSGT00950000182891.a.a.b.a.a.c
Salmoninae_a	ANCESTRAL SPECIES	22	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib	ENSGT00390000000051.a.b	ENSGT00940000154412.C.d.a	ENSGT00950000183158.A.e.a	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00990000208947	ENSGT00390000014000.c	ENSGT00390000007212.d	ENSGT00390000012434.a	ENSGT00950000182993.A.a.i.c	ENSGT00940000158588.d.a.b	ENSGT00390000005338.a	ENSGT00900000141362.a.b.b	ENSGT00940000160888.d	ENSGT01030000235192.d	ENSGT00940000159972.i.b	ENSGT00390000002877.g	ENSGT00940000161678.eb	ENSGT00940000157246.b.a	ENSGT00950000182891.a.a.b.a.a.c
Salmo	ANCESTRAL SPECIES	14	ENSGT00940000158649.a.a.a	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib	ENSGT00390000000051.a.b	ENSGT00940000154412.C.d.a	ENSGT00950000183158.A.e.a	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00990000208947	ENSGT00390000014000.c	ENSGT00390000007212.d	ENSGT00390000012434.a	ENSGT00950000182993.A.a.i.c	ENSGT00940000158588.d.a.b	ENSGT00390000005338.a	ENSGT00900000141362.a.b.b	ENSGT00990000212527	ENSGT00940000160888.d	ENSGT01030000235192.d	ENSGT00940000159972.i.b	ENSGT00390000002877.g	ENSGT00940000161678.eb	ENSGT00940000157246.b.a
Atlantic salmon	MODERN SPECIES	1	ENSSSAG00000097869	NCAN (ENSSSAG00000063786)	hapln4 (ENSSSAG00000063760)	tm6sf2b (ENSSSAG00000063746)	ENSSSAG00000063326	tjp3 (ENSSSAG00000063260)	ENSSSAG00000058332	gpx4a (ENSSSAG00000058124)	ENSSSAG00000056411	ENSSSAG00000056122	ENSSSAG00000095065	ENSSSAG00000114371	hnrpm (ENSSSAG00000056055)	timm44 (ENSSSAG00000055890)	fbn2b (ENSSSAG00000007909)	cers4a (ENSSSAG00000007285) ##22	ENSSSAG00000007264	TIM13 (ENSSSAG00000007258)	ENSSSAG00000007254	nduab (ENSSSAG00000007249)	ENSSSAG00000071191	ranb3 (ENSSSAG00000007242)	ctns (ENSSSAG00000007234)	ENSSSAG00000007228	ENSSSAG00000007224	ENSSSAG00000116706	ccl44 (ENSSSAG00000007216)	ENSSSAG00000007183	tax1bp3 (ENSSSAG00000095414)	hsh2d (ENSSSAG00000007170)	ENSSSAG00000007160
River trout	MODERN SPECIES	14	ENSSTUG00000044063	hapln4 (ENSSTUG00000044054)	tm6sf2b (ENSSTUG00000044043)	ENSSTUG00000043793	tjp3 (ENSSTUG00000043703)	ARHGAP45 (ENSSTUG00000043344)	gpx4a (ENSSTUG00000043325)	PIP5K1C (ENSSTUG00000041728)	ENSSTUG00000041457	marchf2 (ENSSTUG00000041424)	ENSSTUG00000041378	hnrnpm (ENSSTUG00000041137)	timm44 (ENSSTUG00000040985)	CTXN1 (ENSSTUG00000040963)	fbn2b (ENSSTUG00000034318)	cers4a (ENSSTUG00000034083) ##22	timm13 (ENSSTUG00000034066)	VMAC (ENSSTUG00000034061)	ndufa11 (ENSSTUG00000034053)	ENSSTUG00000034047	RANBP3 (ENSSTUG00000034008)	ctns (ENSSTUG00000033944)	ccl25b (ENSSTUG00000033940)	ENSSTUG00000033934	pole4 (ENSSTUG00000033925)	ccl44 (ENSSTUG00000033916)	slc1a6 (ENSSTUG00000032850)	tax1bp3 (ENSSTUG00000032815)	hsh2d (ENSSTUG00000032804)	RAB8A (ENSSTUG00000032783)	ENSSTUG00000032751
Oncorhynchus	ANCESTRAL SPECIES	8	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00390000013841.db.b.a	ENSGT00980000198641	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib	ENSGT00390000000051.a.b	ENSGT00940000154412.C.d.a	ENSGT00950000183158.A.e.a	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00390000014000.c	ENSGT00390000007212.d	ENSGT00390000012434.a	ENSGT00950000182993.A.a.i.c	ENSGT00940000158588.d.a.b	ENSGT00390000005338.a	ENSGT00900000141362.a.b.b	ENSGT00940000160888.d	ENSGT01030000235192.d	ENSGT00940000159972.i.b	ENSGT00390000002877.g	ENSGT00940000161678.eb	ENSGT00940000157246.b.a	ENSGT00950000182891.a.a.b.a.a.c	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b.b
Rainbow trout	MODERN SPECIES	26	ENSOMYG00000011414	tjp3 (ENSOMYG00000011022)	ENSOMYG00000010704	ENSOMYG00000061676	gpx4a (ENSOMYG00000054982)	ENSOMYG00000010544	ENSOMYG00000010482	ENSOMYG00000010431	ENSOMYG00000010385	ENSOMYG00000077314	ENSOMYG00000010314	timm44 (ENSOMYG00000010138)	ENSOMYG00000010059	ENSOMYG00000058318	fbn2b (ENSOMYG00000009828)	cers4a (ENSOMYG00000009657) ##22	ENSOMYG00000061589	ENSOMYG00000009641	ENSOMYG00000009602	ndufa11 (ENSOMYG00000009588)	ENSOMYG00000061253	ENSOMYG00000050465	ENSOMYG00000009517	ctns (ENSOMYG00000067836)	ENSOMYG00000050369	ccl25b (ENSOMYG00000009409)	pole4 (ENSOMYG00000009390)	ccl44 (ENSOMYG00000052538)	slc1a6 (ENSOMYG00000009337)	tax1bp3 (ENSOMYG00000009299)	hsh2d (ENSOMYG00000009280)
Oncorhynchus_a	ANCESTRAL SPECIES	14	ENSGT00940000160926.d	ENSGT00390000012913.a.b.c	ENSGT00940000159946.e	ENSGT00940000160036.e	ENSGT00950000183110.b.a.c.h	ENSGT00980000198641	ENSGT00940000170739	ENSGT00940000159258.d.d	ENSGT00940000163126.a.b.i.b	ENSGT00940000158995.a.g	ENSGT00940000163126.a.b.i.a	ENSGT00940000154595.ib	ENSGT00390000000051.a.b	ENSGT00940000154412.C.d.a	ENSGT00950000183158.A.e.a	ENSGT01030000234515.a.b.b.a.c ##22	ENSGT00390000014000.c	ENSGT00390000007212.d	ENSGT00390000012434.a	ENSGT00950000182993.A.a.i.c	ENSGT00940000158588.d.a.b	ENSGT00900000141362.a.b.b	ENSGT00940000160888.d	ENSGT00940000159972.i.b	ENSGT00390000002877.g	ENSGT00940000161678.eb	ENSGT00940000157246.b.a	ENSGT00950000182891.a.a.b.a.a.c	ENSGT01030000234542.b.b.a.a.a.b.wb.a.b.b	ENSGT00940000157178.h.h	ENSGT00940000166556.a
Coho salmon	MODERN SPECIES	4	tm6sf2b (ENSOKIG00005005345)	SBNO2 (ENSOKIG00005005403)	tjp3 (ENSOKIG00005005822)	ARHGAP45 (ENSOKIG00005005934)	gpx4a (ENSOKIG00005006312)	POLR2E (ENSOKIG00005006325)	ENSOKIG00005006382	PIP5K1C (ENSOKIG00005006405)	ENSOKIG00005006489	MARCHF2 (ENSOKIG00005006620)	ENSOKIG00005006638	HNRNPM (ENSOKIG00005006677)	timm44 (ENSOKIG00005006764)	CTXN1 (ENSOKIG00005006925)	fbn2b (ENSOKIG00005007419)	cers4a (ENSOKIG00005015221) ##22	TIMM13 (ENSOKIG00005015341)	VMAC (ENSOKIG00005015362)	ndufa11 (ENSOKIG00005015366)	ENSOKIG00005015375	ENSOKIG00005015380	ENSOKIG00005015389	RANBP3 (ENSOKIG00005015396)	ccl25b (ENSOKIG00005015413)	pole4 (ENSOKIG00005015425)	slc1a6 (ENSOKIG00005015460)	tax1bp3 (ENSOKIG00005015499)	hsh2d (ENSOKIG00005015515)	RAB8A (ENSOKIG00005015521)	ENSOKIG00005015550	TPM4 (ENSOKIG00005015593)
Chinook salmon	MODERN SPECIES	29	tm6sf2b (ENSOTSG00005035943)	SBNO2 (ENSOTSG00005035723)	tjp3 (ENSOTSG00005035701)	ARHGAP45 (ENSOTSG00005035344)	ENSOTSG00005035333	ENSOTSG00005035332	gpx4a (ENSOTSG00005035330)	ENSOTSG00005035328	PIP5K1C (ENSOTSG00005034853)	ENSOTSG00005034775	marchf2 (ENSOTSG00005034769)	ENSOTSG00005034755	hnrnpm (ENSOTSG00005034749)	timm44 (ENSOTSG00005034744)	fbn2b (ENSOTSG00005033873)	cers4a (ENSOTSG00005033853) ##22	timm13 (ENSOTSG00005033851)	VMAC (ENSOTSG00005033849)	ndufa11 (ENSOTSG00005033848)	ENSOTSG00005033847	RANBP3 (ENSOTSG00005033844)	ccl25b (ENSOTSG00005033838)	ENSOTSG00005033836	slc1a6 (ENSOTSG00005033052)	tax1bp3 (ENSOTSG00005033049)	hsh2d (ENSOTSG00005033048)	RAB8A (ENSOTSG00005033046)	ENSOTSG00005033045	tpm4a (ENSOTSG00005032766)	lpl (ENSOTSG00005031029)	ENSOTSG00005030956
Huchen	MODERN SPECIES	835																cers4a (ENSHHUG00000041164) ##22	ENSHHUG00000041157	timm13 (ENSHHUG00000041142)	VMAC (ENSHHUG00000041140)	ndufa11 (ENSHHUG00000041135)	ENSHHUG00000041115	ENSHHUG00000041110	ENSHHUG00000041101	RANBP3 (ENSHHUG00000041095)	ctns (ENSHHUG00000041082)	ccl25b (ENSHHUG00000041080)	ENSHHUG00000041061	slc1a6 (ENSHHUG00000040994)	tax1bp3 (ENSHHUG00000040992)	hsh2d (ENSHHUG00000040991)	RAB8A (ENSHHUG00000040923)
Northern pike	MODERN SPECIES	7	hapln4 (ENSELUG00000020165)	tm6sf2b (ENSELUG00000020227)	SBNO2 (ENSELUG00000020457)	tjp3 (ENSELUG00000020504)	ARHGAP45 (ENSELUG00000020523)	polr2e (ENSELUG00000020646)	GPX4 (ENSELUG00000001177)	PIP5K1C (ENSELUG00000020850)	ENSELUG00000000916	marchf2 (ENSELUG00000020908)	ENSELUG00000020948	hnrnpm (ENSELUG00000021183)	timm44 (ENSELUG00000021214)	CTXN1 (ENSELUG00000021223)	fbn2b (ENSELUG00000021359)	cers4a (ENSELUG00000021425) ##22	ENSELUG00000021433	ENSELUG00000021624	ENSELUG00000026582	timm13 (ENSELUG00000025209)	larp6b (ENSELUG00000031284)	VMAC (ENSELUG00000021677)	NDUAB (ENSELUG00000030012)	ENSELUG00000021701	RANBP3 (ENSELUG00000021738)	ctns (ENSELUG00000021756)	ccl25b (ENSELUG00000021813)	ENSELUG00000021846	pole4 (ENSELUG00000025074)	ccl44 (ENSELUG00000021883)	slc1a6 (ENSELUG00000021906)
Protacanthopterygii	ANCESTRAL SPECIES	422															ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.a.d ##22
Salmoninae	ANCESTRAL SPECIES	996															ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.a.d ##22	ENSGT00940000155273.j	ENSGT00940000159993	ENSGT00510000049239.a.d.a	ENSGT00940000160104
Salmoninae_a	ANCESTRAL SPECIES	1	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00950000183110.b.a.c.g	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000163126.a.b.j.b	ENSGT00940000158995.a.h	ENSGT00940000163126.a.b.j.a	ENSGT00940000154595.hb	ENSGT00390000000051.a.a	ENSGT00940000154412.C.d.b	ENSGT00950000183158.A.e.b	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.a.d ##22	ENSGT00940000155273.j	ENSGT00940000163715.b	ENSGT00940000159993	ENSGT00940000160104.v	ENSGT00390000014000.d	ENSGT00940000165636.d	ENSGT00390000007212.c	ENSGT00390000012434.b	ENSGT00950000182993.A.a.i.d	ENSGT00940000158588.d.a.a	ENSGT00940000176016	ENSGT00940000169448	ENSGT00390000005338.b	ENSGT00900000141362.a.b.a	ENSGT00940000165287.a.b
Oncorhynchus	ANCESTRAL SPECIES	2	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000161659.z	ENSGT00940000158995.a.h	ENSGT00940000163126.a.b.j.a	ENSGT00940000154595.hb	ENSGT00390000000051.a.a	ENSGT00940000154412.C.d.b	ENSGT00950000183158.A.e.b	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.a.d ##22	ENSGT00940000163715.b	ENSGT00940000159993	ENSGT00940000160104.v	ENSGT00390000014000.d	ENSGT00940000165636.d	ENSGT00390000007212.c	ENSGT00390000012434.b	ENSGT00950000182993.A.a.i.d	ENSGT00940000158588.d.a.a	ENSGT00940000176016	ENSGT00940000169448	ENSGT00390000005338.b	ENSGT00900000141362.a.b.a	ENSGT00940000165287.a.b	ENSGT00940000160888.c
Oncorhynchus_a	ANCESTRAL SPECIES	1	ENSGT00940000160926.c	ENSGT00390000012913.a.b.d	ENSGT00940000159946.f	ENSGT00940000160036.f	ENSGT00390000013841.db.b.b	ENSGT00940000161913.b	ENSGT00940000159258.d.c	ENSGT00940000161659.z	ENSGT00940000158995.a.h	ENSGT00940000163126.a.b.j.a	ENSGT00940000154595.hb	ENSGT00390000000051.a.a	ENSGT00940000154412.C.d.b	ENSGT00950000183158.A.e.b	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.a.d ##22	ENSGT00940000163715.b	ENSGT00940000159993	ENSGT00940000160104.v	ENSGT00390000014000.d	ENSGT00940000165636.d	ENSGT00390000007212.c	ENSGT00390000012434.b	ENSGT00950000182993.A.a.i.d	ENSGT00940000158588.d.a.a	ENSGT00940000176016	ENSGT00940000169448	ENSGT00390000005338.b	ENSGT00900000141362.a.b.a	ENSGT00940000165287.a.b	ENSGT00940000160888.c
Chinook salmon	MODERN SPECIES	30	bsg (ENSOTSG00005034047)	RNF126 (ENSOTSG00005034046)	hapln4 (ENSOTSG00005034045)	tm6sf2b (ENSOTSG00005034044)	ENSOTSG00005034043	ENSOTSG00005033995	tjp3 (ENSOTSG00005033899)	POLR2E (ENSOTSG00005033858)	gpx4b (ENSOTSG00005033856)	PIP5K1C (ENSOTSG00005033823)	rab11ba (ENSOTSG00005033811)	marchf2 (ENSOTSG00005033809)	ENSOTSG00005033710	hnrnpm (ENSOTSG00005033702)	ENSOTSG00005033698	cers4a (ENSOTSG00005033549) ##22	ENSOTSG00005033543	ENSOTSG00005033542	ENSOTSG00005033541	timm13 (ENSOTSG00005033540)	larp6b (ENSOTSG00005033539)	VMAC (ENSOTSG00005033538)	ndufa11 (ENSOTSG00005033537)	ENSOTSG00005033536	RANBP3 (ENSOTSG00005033535)	ENSOTSG00005033534	ctns (ENSOTSG00005033532)	ccl25b (ENSOTSG00005033528)	ENSOTSG00005033527	pole4 (ENSOTSG00005033526)	ccl44 (ENSOTSG00005033525)
Coho salmon	MODERN SPECIES	24	NCAN (ENSOKIG00005006893)	hapln4 (ENSOKIG00005006870)	tm6sf2b (ENSOKIG00005006832)	SBNO2 (ENSOKIG00005003865)	tjp3 (ENSOKIG00005003661)	POLR2E (ENSOKIG00005003644)	gpx4a (ENSOKIG00005003635)	PIP5K1C (ENSOKIG00005003580)	ENSOKIG00005003533	marchf2 (ENSOKIG00005003528)	ENSOKIG00005003507	hnrnpm (ENSOKIG00005003428)	timm44 (ENSOKIG00005003384)	CTXN1 (ENSOKIG00005003363)	fbn2b (ENSOKIG00005001689)	ENSOKIG00005001573 ##22	ENSOKIG00005001568	ENSOKIG00005001563	ENSOKIG00005001523	ENSOKIG00005001506	timm13 (ENSOKIG00005001502)	ENSOKIG00005001498	larp6b (ENSOKIG00005001496)	VMAC (ENSOKIG00005001491)	ndufa11 (ENSOKIG00005001489)	ENSOKIG00005001482	RANBP3 (ENSOKIG00005001478)	ENSOKIG00005001474	ctns (ENSOKIG00005001466)	ccl25b (ENSOKIG00005001459)	ENSOKIG00005001454
Rainbow trout	MODERN SPECIES		hapln4 (ENSOMYG00000018953)	tm6sf2b (ENSOMYG00000018927)	ENSOMYG00000017800	ENSOMYG00000017619	ENSOMYG00000017608	ENSOMYG00000017142	rab11ba (ENSOMYG00000017065)	ENSOMYG00000017055	ENSOMYG00000016866	ENSOMYG00000056328	hnrnpm (ENSOMYG00000016801)	ENSOMYG00000015162	ENSOMYG00000059265	ENSOMYG00000006445	ENSOMYG00000075861	cers4a (ENSOMYG00000002074) ##22	ENSOMYG00000002035	ENSOMYG00000056939	ENSOMYG00000001903	ENSOMYG00000060303	ENSOMYG00000001586	ENSOMYG00000001559	ENSOMYG00000001534	ENSOMYG00000001492	ndufa11 (ENSOMYG00000001434)	ENSOMYG00000070591	ENSOMYG00000001372	ctns (ENSOMYG00000001351)	ccl25b (ENSOMYG00000056584)	ENSOMYG00000001253	pole4 (ENSOMYG00000001207)
Osteoglossiformes	ANCESTRAL SPECIES	2									ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000158995.a.a.a	ENSGT00940000163126.b.b	ENSGT00390000000051	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00950000182983.B.a.a	ENSGT00940000157375.c.a	ENSGT00940000155404.g	ENSGT00940000164530.f	ENSGT00940000156845	ENSGT01050000244887.B	ENSGT00500000044945.a	ENSGT01030000234515.b ##22	ENSGT00390000003478	ENSGT00390000003488.a.b.a ##12
P. kingsleyae	MODERN SPECIES	4	ENSPKIG00000012246	si:ch211-262h13.5 (ENSPKIG00000012235)	ENSPKIG00000012202	ENSPKIG00000012168	anos1b (ENSPKIG00000012096)	hps3 (ENSPKIG00000011984)	cp (ENSPKIG00000011931)	gpx4a (ENSPKIG00000011901)	PIP5K1C (ENSPKIG00000011758)	ENSPKIG00000011703	marchf2 (ENSPKIG00000011668)	rab11bb (ENSPKIG00000011640)	timm44 (ENSPKIG00000011604)	CTXN1 (ENSPKIG00000011592)	fbn2b (ENSPKIG00000011440)	cers4a (ENSPKIG00000011374) ##22	ENSPKIG00000011358	lsm7 (ENSPKIG00000011325)	sppl2 (ENSPKIG00000011242)	ENSPKIG00000011197	timm13 (ENSPKIG00000011170)	enc3 (ENSPKIG00000011160)	ARHGEF18 (ENSPKIG00000011091)	ENSPKIG00000011061	INSR (ENSPKIG00000010986)	ENSPKIG00000010912	MYO9B (ENSPKIG00000010594)	s1pr4 (ENSPKIG00000010500)	ncln (ENSPKIG00000010457)	CERS1 (ENSPKIG00000010433) ##22	tnfaip8l1 (ENSPKIG00000010419) ##12
Asian bonytongue	MODERN SPECIES	24	hapln4 (ENSSFOG00015005804)	tm6sf2b (ENSSFOG00015005813)	sbno2a (ENSSFOG00015005861)	tjp3 (ENSSFOG00015006025)	ARHGAP45 (ENSSFOG00015006049)	ENSSFOG00015006102	ENSSFOG00015031818	polr2eb (ENSSFOG00015006073)	PIP5K1C (ENSSFOG00015006149)	ENSSFOG00015027051	marchf2 (ENSSFOG00015031063)	ENSSFOG00015027151	timm44 (ENSSFOG00015006426)	CTXN1 (ENSSFOG00015025184)	fbn2b (ENSSFOG00015006450)	cers4a (ENSSFOG00015006652) ##22	ENSSFOG00015006709	lsm7 (ENSSFOG00015006728)	sppl2 (ENSSFOG00015006776)	ENSSFOG00015006815	timm13 (ENSSFOG00015006900)	enc3 (ENSSFOG00015024763)	ARHGEF18 (ENSSFOG00015006935)	INSR (ENSSFOG00015006996)	ENSSFOG00015026640	MYO9B (ENSSFOG00015007204)	s1pr4 (ENSSFOG00015007287)	ncln (ENSSFOG00015007294)	CERS1 (ENSSFOG00015007346) ##22	tnfaip8l1 (ENSSFOG00015007357) ##12	loxl5a (ENSSFOG00015007376)
Osteoglossocephalai	ANCESTRAL SPECIES	72	ENSGT00940000160036	ENSGT00950000183110.b.a	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.c	ENSGT00980000198641	ENSGT00940000159258.d	ENSGT00940000161659	ENSGT00940000158995.a	ENSGT00940000163126.a	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C.c	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000154412.C.d	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b.a ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155138
Clupeocephala	ANCESTRAL SPECIES	38	ENSGT00390000013329	ENSGT00940000161021.a.a	ENSGT00390000000289	ENSGT01030000236342	ENSGT00940000159994	ENSGT00940000177177	ENSGT00510000053055	ENSGT00730000113192	ENSGT00940000153593	ENSGT00940000158081.o.a	ENSGT00730000111231	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00390000015368.a.a.d	ENSGT00610000086173	ENSGT00940000162806.b.b	ENSGT00940000158959.b.a	ENSGT00940000164492.a.b	ENSGT00940000160620	ENSGT00940000164804.b	ENSGT00940000157050.i.b	ENSGT00940000157166.c	ENSGT01030000235156	ENSGT00390000010652.D.a.a
Otomorpha	ANCESTRAL SPECIES	5	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000165680.A	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a	ENSGT00940000157924	ENSGT01030000234542.b.b.a.a.a.b.wb.b	ENSGT00940000157178.g
Otophysi	ANCESTRAL SPECIES	52	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.a.a	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a	ENSGT00940000157924
Characiphysae	ANCESTRAL SPECIES	34	ENSGT00940000159179.g	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.a.b	ENSGT00940000153593.h.a.a	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a
Channel catfish	MODERN SPECIES	12	ENSIPUG00000019406	MBD3 (ENSIPUG00000019419)	MEX3D (ENSIPUG00000019444)	UNC13A (ENSIPUG00000019460)	btbd2 (ENSIPUG00000019506)	Armc6 (ENSIPUG00000019528)	slc25a42 (ENSIPUG00000019552)	Ncan (ENSIPUG00000019592)	tm6sf2 (ENSIPUG00000019656)	sbno2 (ENSIPUG00000019672)	ARHGAP45 (ENSIPUG00000019753)	polr2ea (ENSIPUG00000019801)	gpx4b (ENSIPUG00000019856)	PIP5K1C (ENSIPUG00000019881)	rab11bb (ENSIPUG00000019927)	ENSIPUG00000019970 ##22	HOMER3 (ENSIPUG00000005017)	uba52 (ENSIPUG00000005058)	UPF1 (ENSIPUG00000005108)	Pgpep1 (ENSIPUG00000005216)	jund (ENSIPUG00000005241)	Lox (ENSIPUG00000005255)	nmrk2 (ENSIPUG00000005267)	ATCAY (ENSIPUG00000005280)	cplx4c (ENSIPUG00000005311)	rx2 (ENSIPUG00000005326)	CALR (ENSIPUG00000005374)	ENSIPUG00000005411	ENSIPUG00000005421	ENSIPUG00000006478	Klf2 (ENSIPUG00000006554)
Characiphysae_b	ANCESTRAL SPECIES	57	ENSGT00940000159179.g	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.a.b	ENSGT00940000153593.h.a.a	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a
Electric eel	MODERN SPECIES	471					ENSEEEG00000022908	tm6sf2a (ENSEEEG00000022912)	sbno2a (ENSEEEG00000022924)	ARHGAP45 (ENSEEEG00000022933)	POLR2E (ENSEEEG00000022939)	gpx4b (ENSEEEG00000022942)	ENSEEEG00000022944	PIP5K1C (ENSEEEG00000022945)	rab11bb (ENSEEEG00000022947)	TIMM44 (ENSEEEG00000022954)	CTXN1 (ENSEEEG00000022955)	ENSEEEG00000022960 ##22	uba52 (ENSEEEG00000022967)	HOMER3 (ENSEEEG00000022969)	upf1 (ENSEEEG00000000063)	pgpep1 (ENSEEEG00000000084)	jund (ENSEEEG00000000093)	loxl5b (ENSEEEG00000000155)	nmrk2 (ENSEEEG00000000205)	ATCAY (ENSEEEG00000000232)	cplx4c (ENSEEEG00000000270)	rx2 (ENSEEEG00000000298)	ENSEEEG00000000320	ENSEEEG00000000338
Characoidei	ANCESTRAL SPECIES	45	ENSGT00940000161905.b	ENSGT00940000159179.g	ENSGT00940000154662.d	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.b.b	ENSGT00940000153593.h.a.a	ENSGT00940000158081.o.b	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a	ENSGT00940000164495.c.a
Red-bellied piranha	MODERN SPECIES	48	ENSPNAG00000027188	BTBD2 (ENSPNAG00000027052)	eef2b (ENSPNAG00000027010)	ARMC6 (ENSPNAG00000006370)	slc25a42 (ENSPNAG00000026892)	ENSPNAG00000026808	tm6sf2a (ENSPNAG00000026691)	sbno2a (ENSPNAG00000026609)	ARHGAP45 (ENSPNAG00000026372)	POLR2E (ENSPNAG00000026263)	gpx4b (ENSPNAG00000026183)	PIP5K1C (ENSPNAG00000006737)	ENSPNAG00000006431	TIMM44 (ENSPNAG00000026001)	CTXN1 (ENSPNAG00000025942)	ENSPNAG00000025924 ##22	uba52 (ENSPNAG00000025916)	HOMER3 (ENSPNAG00000025639)	upf1 (ENSPNAG00000025614)	pgpep1 (ENSPNAG00000025537)	jund (ENSPNAG00000006056)	ENSPNAG00000025498	loxl5b (ENSPNAG00000006766)	nmrk2 (ENSPNAG00000003921)	ATCAY (ENSPNAG00000025397)	cplx4c (ENSPNAG00000025384)	ENSPNAG00000003912	rx2 (ENSPNAG00000025348)	ENSPNAG00000025330	ENSPNAG00000005719	klf2b (ENSPNAG00000025132)
Mexicana tetra	MODERN SPECIES	8	UNC13A (ENSAMXG00000017978)	BTBD2 (ENSAMXG00000006626)	eef2b (ENSAMXG00000006645)	ARMC6 (ENSAMXG00000006664)	slc25a42 (ENSAMXG00000006680)	ENSAMXG00000038802	tm6sf2a (ENSAMXG00000040821)	sbno2a (ENSAMXG00000018868)	ARHGAP45 (ENSAMXG00000018912)	POLR2E (ENSAMXG00000018915)	gpx4b (ENSAMXG00000041988)	PIP5K1C (ENSAMXG00000041140)	rab11bb (ENSAMXG00000042655)	TIMM44 (ENSAMXG00000018942)	CTXN1 (ENSAMXG00000026132)	ENSAMXG00000018965 ##22	UBA52 (ENSAMXG00000037850)	ENSAMXG00000018993	upf1 (ENSAMXG00000042187)	pgpep1 (ENSAMXG00000038090)	jund (ENSAMXG00000026133)	loxl5b (ENSAMXG00000019021)	nmrk2 (ENSAMXG00000034655)	cplx4c (ENSAMXG00000041674)	rx2 (ENSAMXG00000041205)	ENSAMXG00000015116	ENSAMXG00000039725	klf2b (ENSAMXG00000038341)	ap1m1 (ENSAMXG00000040077)	ENSAMXG00000040121	ENSAMXG00000038945
Cyprinoidei	ANCESTRAL SPECIES	17	ENSGT00390000014856	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.g	ENSGT00940000160036	ENSGT00950000183110.b.a.c	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000170739	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.a.b	ENSGT00940000158081.o.a.f	ENSGT00940000157413	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000181505	ENSGT00940000154779.a.a.c	ENSGT00940000153593.h.a.a	ENSGT00940000158081.o.b	ENSGT00940000165007.a	ENSGT00940000158364.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b	ENSGT00950000182915.b.b.a.b.c.b	ENSGT00940000155438.a
Cyprininae	ANCESTRAL SPECIES	324	ENSGT00940000159946.h.a	ENSGT00940000158163.a.a	ENSGT00940000158649.a.b.a.b	ENSGT00390000012913.a.a.d	ENSGT00940000159946.h.b	ENSGT00950000183110.b.a.d	ENSGT00390000013841.ib	ENSGT00940000161913.d.a.a	ENSGT00940000159258.c.a	ENSGT00940000163126.a.a.a.b	ENSGT00940000154412.C.c.a.b	ENSGT00940000161913.d.a.b	ENSGT00940000159258.c.b	ENSGT00940000163126.a.a.a.a	ENSGT00940000154412.C.c.a.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.h.a.b	ENSGT00940000153593.h.b.b	ENSGT00940000158081.o.b.b	ENSGT00940000157413.i	ENSGT00390000015368.a.a.c.b	ENSGT00940000162806.b.a	ENSGT00940000154779.a.a.c.a	ENSGT00940000165007.a.b	ENSGT00940000158364.a.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b.a	ENSGT00950000182915.b.b.a.b.c.b.b	ENSGT00940000155438.a.r	ENSGT00940000164495.c.a	ENSGT00940000157924.f
Cyprininae_a	DUPLICATION
Cyprininae_a	ANCESTRAL SPECIES	59	ENSGT00950000183005.b.a.b	ENSGT00940000162613.f	ENSGT00940000161905.b.b	ENSGT00940000159179.g.b	ENSGT00940000154662.d.u	ENSGT00390000002913	ENSGT00940000158163.a.b	ENSGT00940000158649.a.b.a.a	ENSGT00390000012913.a.a.c	ENSGT00940000159946.h.a	ENSGT00950000183110.b.a.d.b	ENSGT00940000161913.d.a.b	ENSGT00940000159258.c.b	ENSGT00940000163126.a.a.a.a	ENSGT00940000154412.C.c.a.a	ENSGT01030000234515.a.b.b.b.a ##22	ENSGT00940000153593.h.b.a	ENSGT00940000158081.o.b.a	ENSGT00940000157413.j	ENSGT00390000015368.a.a.c.a	ENSGT00940000154779.a.a.c.b	ENSGT00940000165007.a.a	ENSGT00940000158364.a.b	ENSGT00940000163917.a.b.b	ENSGT00950000182915.b.b.a.b.c.b.a	ENSGT00940000155438.a.q	ENSGT00940000164495.c.a.a	ENSGT00940000155363.w	ENSGT00940000160466.b	ENSGT00940000165063.g	ENSGT00390000005847.a
Common carp reference	MODERN SPECIES	29	ENSCCRG00000055311	eef2b (ENSCCRG00000064570)	MEX3D (ENSCCRG00000055684)	ENSCCRG00000070880	ENSCCRG00000014462	ENSCCRG00000035161	slc25a42 (ENSCCRG00000082753)	ENSCCRG00000001521	tm6sf2a (ENSCCRG00000061917)	sbno2a (ENSCCRG00000078397)	ENSCCRG00000022982	gpx4b (ENSCCRG00000058980)	ENSCCRG00000037725	rab11bb (ENSCCRG00000003636)	ENSCCRG00000071775	ENSCCRG00000067269 ##22	uba52 (ENSCCRG00000007704)	ENSCCRG00000007775	upf1 (ENSCCRG00000007785)	pgpep1 (ENSCCRG00000007790)	loxl5b (ENSCCRG00000074189)	nmrk2 (ENSCCRG00000051935)	ENSCCRG00000051906	rx2 (ENSCCRG00000007794)	ENSCCRG00000076172	ENSCCRG00000053619	klf2b (ENSCCRG00000006413)	ENSCCRG00000049877	ENSCCRG00000007837	ENSCCRG00000076191	ENSCCRG00000052584
Golden-line barbel	MODERN SPECIES	455	tcf3a (ENSSGRG00000000322)	ENSSGRG00000000377	MEX3D (ENSSGRG00000000455)	BTBD2 (ENSSGRG00000000457)	eef2b (ENSSGRG00000000497)	ARMC6 (ENSSGRG00000001841)	slc25a42 (ENSSGRG00000001842)	ENSSGRG00000001845	tm6sf2a (ENSSGRG00000001851)	sbno2a (ENSSGRG00000001866)	ARHGAP45 (ENSSGRG00000002091)	gpx4b (ENSSGRG00000002092)	ENSSGRG00000002108	rab11bb (ENSSGRG00000004582)	CTXN1 (ENSSGRG00000004684)	ENSSGRG00000004686 ##22	HOMER3 (ENSSGRG00000004689)	upf1 (ENSSGRG00000004701)	pgpep1 (ENSSGRG00000004992)	jund (ENSSGRG00000004993)	nmrk2 (ENSSGRG00000004999)	ATCAY (ENSSGRG00000005215)	ENSSGRG00000005235	ENSSGRG00000006659	klf2b (ENSSGRG00000006665)	ap1m1 (ENSSGRG00000006676)	LPL (ENSSGRG00000006955)	ENSSGRG00000007137	ENSSGRG00000007642	CIB3 (ENSSGRG00000007644)	admp (ENSSGRG00000007661)
Cyprininae_a	ANCESTRAL SPECIES	162						ENSGT00940000158163.a.a	ENSGT00940000158649.a.b.a.b	ENSGT00390000012913.a.a.d	ENSGT00940000159946.h.b	ENSGT00950000183110.b.a.d.a	ENSGT00390000013841.ib	ENSGT00940000161913.d.a.a	ENSGT00940000159258.c.a	ENSGT00940000163126.a.a.a.b	ENSGT00940000154412.C.c.a.b	ENSGT01030000234515.a.b.b.b.b ##22	ENSGT00940000153593.h.b.b	ENSGT00940000158081.o.b.b	ENSGT00940000157413.i	ENSGT00390000015368.a.a.c.b	ENSGT00940000162806.b.a	ENSGT00940000154779.a.a.c.a	ENSGT00940000165007.a.b	ENSGT00940000158364.a.a	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000163917.a.b.a	ENSGT00950000182915.b.b.a.b.c.b.b	ENSGT00940000155438.a.r	ENSGT00940000164495.c.a.b	ENSGT00940000157924.f	ENSGT01030000234542.b.b.a.a.a.b.wb.b.b
Common carp reference	MODERN SPECIES	21	MEX3D (ENSCCRG00000058664)	ENSCCRG00000039392	ENSCCRG00000035403	eef2b (ENSCCRG00000035228)	ENSCCRG00000011585	slc25a42 (ENSCCRG00000080212)	ENSCCRG00000065346	tm6sf2a (ENSCCRG00000073164)	sbno2a (ENSCCRG00000020152)	ARHGAP45 (ENSCCRG00000012460)	ENSCCRG00000012408	gpx4b (ENSCCRG00000071825)	ENSCCRG00000045930	rab11bb (ENSCCRG00000000721)	ENSCCRG00000073664	ENSCCRG00000026536 ##22	uba52 (ENSCCRG00000016171)	ENSCCRG00000058571	upf1 (ENSCCRG00000051892)	pgpep1 (ENSCCRG00000073516)	jund (ENSCCRG00000035101)	loxl5b (ENSCCRG00000045132)	nmrk2 (ENSCCRG00000045258)	ENSCCRG00000045180	cplx4c (ENSCCRG00000079094)	rx2 (ENSCCRG00000075008)	ENSCCRG00000019801	ENSCCRG00000081626	klf2b (ENSCCRG00000011217)	ENSCCRG00000016932	ap1m1 (ENSCCRG00000049217)
Golden-line barbel	MODERN SPECIES	215	MEX3D (ENSSGRG00000045102)	ENSSGRG00000043912	ENSSGRG00000043880	ENSSGRG00000043878	eef2b (ENSSGRG00000042990)	ARMC6 (ENSSGRG00000042967)	slc25a42 (ENSSGRG00000042966)	ENSSGRG00000042965	tm6sf2a (ENSSGRG00000042962)	sbno2a (ENSSGRG00000042888)	ARHGAP45 (ENSSGRG00000042886)	POLR2E (ENSSGRG00000042825)	gpx4b (ENSSGRG00000042824)	ENSSGRG00000042100	ENSSGRG00000042092	ENSSGRG00000042091 ##22	uba52 (ENSSGRG00000042090)	ENSSGRG00000042060	upf1 (ENSSGRG00000041785)	pgpep1 (ENSSGRG00000041779)	jund (ENSSGRG00000041777)	loxl5b (ENSSGRG00000041775)	nmrk2 (ENSSGRG00000041715)	ENSSGRG00000041711	ATCAY (ENSSGRG00000041709)	cplx4c (ENSSGRG00000041707)	ENSSGRG00000040310	ENSSGRG00000040301	klf2b (ENSSGRG00000040298)	AP1M1 (ENSSGRG00000040228)	LPL (ENSSGRG00000039985)
Goldfish	DUPLICATION
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	19	UBA52 (ENSCARG00000010005)	BTBD2 (ENSCARG00000010021)	eef2b (ENSCARG00000010095)	ENSCARG00000010425	ARMC6 (ENSCARG00000010432)	slc25a42 (ENSCARG00000010448)	ENSCARG00000010458	ENSCARG00000010468	tm6sf2a (ENSCARG00000010494)	sbno2a (ENSCARG00000010535)	ARHGAP45 (ENSCARG00000011156)	gpx4b (ENSCARG00000011225)	ENSCARG00000011245	rab11bb (ENSCARG00000011327)	CTXN1 (ENSCARG00000011388)	ENSCARG00000011400 ##22	uba52 (ENSCARG00000011408)	HOMER3 (ENSCARG00000011431)	upf1 (ENSCARG00000011474)	pgpep1 (ENSCARG00000011489)	jund (ENSCARG00000011501)	loxl5b (ENSCARG00000011513)	ENSCARG00000011526	nmrk2 (ENSCARG00000011532)	ATCAY (ENSCARG00000020674)	rx2 (ENSCARG00000020728)	ENSCARG00000020750	ENSCARG00000021214	klf2b (ENSCARG00000021223)	ap1m1 (ENSCARG00000021242)	LPL (ENSCARG00000021713)
Goldfish	MODERN SPECIES	19	ONECUT3 (ENSCARG00000007986)	ENSCARG00000007994	ENSCARG00000008001	map2k2b (ENSCARG00000008010)	tcf3a (ENSCARG00000008083)	UQCR11 (ENSCARG00000008133)	mbd3a (ENSCARG00000008142)	MEX3D (ENSCARG00000008158)	UNC13A (ENSCARG00000008314)	BTBD2 (ENSCARG00000009449)	gpx4b (ENSCARG00000009457)	ENSCARG00000009474	ENSCARG00000009536	rab11bb (ENSCARG00000009876)	CTXN1 (ENSCARG00000009924)	ENSCARG00000009932 ##22	jund (ENSCARG00000009940)	pgpep1 (ENSCARG00000009948)	upf1 (ENSCARG00000009967)	HOMER3 (ENSCARG00000009993)	UBA52 (ENSCARG00000010005)	BTBD2 (ENSCARG00000010021)	eef2b (ENSCARG00000010095)	ENSCARG00000010425	ARMC6 (ENSCARG00000010432)	slc25a42 (ENSCARG00000010448)	ENSCARG00000010458	ENSCARG00000010468	tm6sf2a (ENSCARG00000010494)	sbno2a (ENSCARG00000010535)	ARHGAP45 (ENSCARG00000011156)
Goldfish	MODERN SPECIES	11	ENSCARG00000003318	ENSCARG00000003312	ENSCARG00000003306	ISYNA1 (ENSCARG00000003281)	plekhj1 (ENSCARG00000003264)	sf3a2 (ENSCARG00000003259)	ENSCARG00000003257	ONECUT3 (ENSCARG00000003254)	pias4b (ENSCARG00000003249)	tcf3a (ENSCARG00000003229)	UQCR11 (ENSCARG00000003217)	ENSCARG00000003211	MEX3D (ENSCARG00000003200)	ENSCARG00000001476	BTBD2 (ENSCARG00000001324)	ENSCARG00000001319 ##22	UBA52 (ENSCARG00000001315)	ENSCARG00000001299	upf1 (ENSCARG00000001254)	pgpep1 (ENSCARG00000001246)	jund (ENSCARG00000001240)	loxl5b (ENSCARG00000001231)	nmrk2 (ENSCARG00000001230)	ATCAY (ENSCARG00000001223)	cplx4c (ENSCARG00000001220)	rx2 (ENSCARG00000001217)	ENSCARG00000001214	CTXN1 (ENSCARG00000001212)	rab11bb (ENSCARG00000001208)	ENSCARG00000001128	gpx4b (ENSCARG00000001104)
Zebrafish	MODERN SPECIES	11	tcf3a (ENSDARG00000005915)	mbd3a (ENSDARG00000061774)	BTBD2 (ENSDARG00000104653)	eef2b (ENSDARG00000100371)	ARMC6 (ENSDARG00000103770)	slc25a42 (ENSDARG00000099368)	ENSDARG00000115552	tm6sf2a (ENSDARG00000105208)	sbno2a (ENSDARG00000098801)	ARHGAP45 (ENSDARG00000052496)	POLR2E (ENSDARG00000074274)	gpx4b (ENSDARG00000076836)	PIP5K1C (ENSDARG00000100313)	rab11bb (ENSDARG00000090086)	ctxn1 (ENSDARG00000113270)	ENSDARG00000018619 ##22	uba52 (ENSDARG00000041435)	ENSDARG00000102532	upf1 (ENSDARG00000016302)	pgpep1 (ENSDARG00000054666)	jund (ENSDARG00000067850)	ENSDARG00000097617	loxl5b (ENSDARG00000076904)	nmrk2 (ENSDARG00000067848)	ENSDARG00000112703	ATCAY (ENSDARG00000059781)	cplx4c (ENSDARG00000094889)	rx2 (ENSDARG00000040321)	calr3b (ENSDARG00000102808)	ENSDARG00000100700	klf2b (ENSDARG00000040432)
Clupeiformes	ANCESTRAL SPECIES	177	ENSGT00390000004097.a.f	ENSGT00390000012198.b.d	ENSGT00390000014810.b.c	ENSGT00390000002913	ENSGT00940000158163.a	ENSGT00940000158649.a.b	ENSGT00390000012913.a.a	ENSGT00940000159946.h	ENSGT00950000183110.b.a.d	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000159258.c	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22
Denticle herring	MODERN SPECIES	14	ENSDCDG00000022049	ARMC6 (ENSDCDG00000022040)	ENSDCDG00000022030	ARMC6 (ENSDCDG00000022034)	slc25a42 (ENSDCDG00000022012)	ENSDCDG00000021977	tm6sf2a (ENSDCDG00000021974)	sbno2a (ENSDCDG00000021954)	ARHGAP45 (ENSDCDG00000021926)	polr2eb (ENSDCDG00000021709)	gpx4b (ENSDCDG00000021692)	PIP5K1C (ENSDCDG00000020330)	rab11bb (ENSDCDG00000020298)	TIMM44 (ENSDCDG00000020293)	CTXN1 (ENSDCDG00000020291)	ENSDCDG00000020289 ##22	PRKAB2 (ENSDCDG00000020287)	ENSDCDG00000020284	ENSDCDG00000020282	ENSDCDG00000020281	ENSDCDG00000020277	ENSDCDG00000020225	FEM1A (ENSDCDG00000020218)	PTPRS (ENSDCDG00000001350)	ENSDCDG00000000502	abhd17aa (ENSDCDG00000000479)	SEMA6B (ENSDCDG00000000459)	ENSDCDG00000000447	rorcb (ENSDCDG00000000364)	sh3gl1a (ENSDCDG00000000204)	stap2a (ENSDCDG00000000183)
Atlantic herring	MODERN SPECIES	14	ENSCHAG00000019627	gucy1a1 (ENSCHAG00000019638)	gucy1b1 (ENSCHAG00000019652)	fabp2 (ENSCHAG00000019745)	fabp2 (ENSCHAG00000019796)	ENSCHAG00000019806	ENSCHAG00000019859	SMU1 (ENSCHAG00000019885)	ENSCHAG00000019906	ENSCHAG00000019913	sbno2a (ENSCHAG00000019960)	ARHGAP45 (ENSCHAG00000021266)	PIP5K1C (ENSCHAG00000021415)	ENSCHAG00000021922	ENSCHAG00000021925	ENSCHAG00000021948 ##22	ENSCHAG00000022153	ENSCHAG00000022158	ENSCHAG00000022163	ENSCHAG00000022169	ENSCHAG00000022200	ENSCHAG00000022203	ENSCHAG00000022228	ENSCHAG00000022239	paip2b (ENSCHAG00000022251)	ENSCHAG00000022285	ENSCHAG00000022305	ENSCHAG00000022314	ENSCHAG00000022321	TESK1 (ENSCHAG00000022343)	faah2a (ENSCHAG00000022384)
Euteleosteomorpha	ANCESTRAL SPECIES	63	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Acanthomorphata	ANCESTRAL SPECIES		ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.b.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00390000010450	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a
Euacanthomorphacea	ANCESTRAL SPECIES	4	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Percomorphaceae	ANCESTRAL SPECIES	6	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Tiger tail seahorse	MODERN SPECIES	377								rbp1.1 (ENSHCOG00000000700)	NMNAT3 (ENSHCOG00000002482)	clstn2a (ENSHCOG00000002473)	spsb4a (ENSHCOG00000002448)	slc25a36a (ENSHCOG00000002442)	MARCHF2 (ENSHCOG00000002433)	rab11bb (ENSHCOG00000002423)	CTXN1 (ENSHCOG00000002404)	ENSHCOG00000002352 ##22	ENSHCOG00000002184	jund (ENSHCOG00000002134)	RAB3A (ENSHCOG00000002125)	ENSHCOG00000002081	ifi30 (ENSHCOG00000001984)	pik3r2 (ENSHCOG00000001948)	ENSHCOG00000001877	si:dkey-56i24.1 (ENSHCOG00000001857)
Percomorphaceae_B	ANCESTRAL SPECIES	8	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a
Percomorphaceae_C	ANCESTRAL SPECIES	6	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00990000206484	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Eupercaria	ANCESTRAL SPECIES	22	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00990000206484	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Tetraodontidae	ANCESTRAL SPECIES	13	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00990000206484	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475	ENSGT00940000158174.b
Tetraodon	MODERN SPECIES	6	slc25a12 (ENSTNIG00000011093)	DYNC1I2 (ENSTNIG00000011092)	and3 (ENSTNIG00000011091)	pcyt1aa (ENSTNIG00000011090)	ap2m1a (ENSTNIG00000011089)	dvl3a (ENSTNIG00000011088)	copb2 (ENSTNIG00000011087)	NMNAT3 (ENSTNIG00000011086)	clstn2a (ENSTNIG00000011085)	spsb4a (ENSTNIG00000011084)	slc25a36a (ENSTNIG00000011083)	MARCHF2 (ENSTNIG00000011082)	rab11bb (ENSTNIG00000011081)	TIMM44 (ENSTNIG00000011080)	CTXN1 (ENSTNIG00000011079)	ENSTNIG00000011078 ##22	HOMER3 (ENSTNIG00000011077)	upf1 (ENSTNIG00000011076)	pgpep1 (ENSTNIG00000011075)	RAB3A (ENSTNIG00000011073)	ENSTNIG00000011072	ifi30 (ENSTNIG00000011071)	pik3r2 (ENSTNIG00000011070)	MAST3 (ENSTNIG00000011069)	ENSTNIG00000011068	crtc1a (ENSTNIG00000011067)	MED26 (ENSTNIG00000011066)	CNN3 (ENSTNIG00000011065)	rps15 (ENSTNIG00000011064)	DPP9 (ENSTNIG00000011063)	angptl4 (ENSTNIG00000011062)
Fugu	MODERN SPECIES	14	and3 (ENSTRUG00000025029)	pcyt1aa (ENSTRUG00000000674)	ap2m1a (ENSTRUG00000000587)	dvl3a (ENSTRUG00000000483)	copb2 (ENSTRUG00000000411)	rbp1.1 (ENSTRUG00000000390)	NMNAT3 (ENSTRUG00000000361)	clstn2a (ENSTRUG00000000290)	spsb4a (ENSTRUG00000023923)	ENSTRUG00000000285	slc25a36a (ENSTRUG00000000258)	MARCHF2 (ENSTRUG00000000243)	rab11bb (ENSTRUG00000033264)	TIMM44 (ENSTRUG00000000206)	CTXN1 (ENSTRUG00000000204)	ENSTRUG00000000191 ##22	HOMER3 (ENSTRUG00000000171)	upf1 (ENSTRUG00000000150)	pgpep1 (ENSTRUG00000026311)	jund (ENSTRUG00000024983)	RAB3A (ENSTRUG00000011189)	ENSTRUG00000011028	ifi30 (ENSTRUG00000010959)	pik3r2 (ENSTRUG00000010476)	MAST3 (ENSTRUG00000010313)	ENSTRUG00000031956	crtc1a (ENSTRUG00000010109)	MED26 (ENSTRUG00000031403)	CNN3 (ENSTRUG00000020175)	rps15 (ENSTRUG00000009730)	DPP9 (ENSTRUG00000009395)
Eupecaria_A	ANCESTRAL SPECIES	8	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Ballan wrasse	MODERN SPECIES	218		ENSLBEG00000015680	dvl3a (ENSLBEG00000015569)	copb2 (ENSLBEG00000015514)	rbp2b (ENSLBEG00000015473)	rbp1.1 (ENSLBEG00000015461)	NMNAT3 (ENSLBEG00000015448)	clstn2a (ENSLBEG00000015393)	zgc:136870 (ENSLBEG00000015372)	spsb4a (ENSLBEG00000015356)	slc25a36a (ENSLBEG00000015309)	MARCHF2 (ENSLBEG00000015279)	rab11bb (ENSLBEG00000015248)	TIMM44 (ENSLBEG00000015213)	CTXN1 (ENSLBEG00000015199)	ENSLBEG00000015169 ##22	HOMER3 (ENSLBEG00000014982)	upf1 (ENSLBEG00000014862)	pgpep1 (ENSLBEG00000014837)	jund (ENSLBEG00000014823)	RAB3A (ENSLBEG00000014792)	ENSLBEG00000014543	ifi30 (ENSLBEG00000014482)	pik3r2 (ENSLBEG00000014394)	ENSLBEG00000014236	ENSLBEG00000014147	ENSLBEG00000014130	ENSLBEG00000014104	crtc1a (ENSLBEG00000014081)	MED26 (ENSLBEG00000014054)	ENSLBEG00000013737
Eupecaria_B	ANCESTRAL SPECIES	8	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Eupecaria_C	ANCESTRAL SPECIES	10	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Gilthead seabream	MODERN SPECIES	13	cadm3 (ENSSAUG00010008993)	SDHC (ENSSAUG00010008991)	atp1a2a (ENSSAUG00010007626)	mpz (ENSSAUG00010007608)	lig1 (ENSSAUG00010007574)	ENSSAUG00010007522	PIP4P1 (ENSSAUG00010007517)	dnaaf6 (ENSSAUG00010007515)	ENSSAUG00010007513	eif3f (ENSSAUG00010007511)	KCNJ9 (ENSSAUG00010007508)	ENSSAUG00010007507	SVIL (ENSSAUG00010007007)	ENSSAUG00010006986	ZEB1 (ENSSAUG00010006978)	ENSSAUG00010006975 ##22	uba52 (ENSSAUG00010006967)	HOMER3 (ENSSAUG00010006962)	upf1 (ENSSAUG00010006947)	pgpep1 (ENSSAUG00010006940)	jund (ENSSAUG00010006938)	RAB3A (ENSSAUG00010006934)	ENSSAUG00010006739	pik3r2 (ENSSAUG00010006682)	MAST3 (ENSSAUG00010006678)	ENSSAUG00010006676	crtc1a (ENSSAUG00010006670)	MED26 (ENSSAUG00010006667)	ENSSAUG00010006664	rps15 (ENSSAUG00010006634)	DPP9 (ENSSAUG00010003300)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	8	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
European seabass	MODERN SPECIES		ENSDLAG00005008795	ENSDLAG00005008772	ENSDLAG00005008457	copb2 (ENSDLAG00005007428)	rbp2b (ENSDLAG00005007381)	rbp1.1 (ENSDLAG00005027822)	NMNAT3 (ENSDLAG00005007373)	clstn2a (ENSDLAG00005007311)	zgc:136870 (ENSDLAG00005007302)	spsb4a (ENSDLAG00005007295)	ENSDLAG00005007214	ENSDLAG00005007195	rab11bb (ENSDLAG00005006977)	ENSDLAG00005031877	ENSDLAG00005006586	ENSDLAG00005006568 ##22	ENSDLAG00005006531	upf1 (ENSDLAG00005005647)	jund (ENSDLAG00005033524)	ENSDLAG00005026750	ENSDLAG00005003922	ifi30 (ENSDLAG00005003806)	pik3r2 (ENSDLAG00005003340)	ENSDLAG00005002659	ENSDLAG00005002544	crtc1a (ENSDLAG00005011972)	ENSDLAG00005011964	ENSDLAG00005011937	ENSDLAG00005003495	ENSDLAG00005010733	angptl4 (ENSDLAG00005010693)
Large yellow croaker	MODERN SPECIES	483	pcyt1aa (ENSLCRG00005023416)	ap2m1a (ENSLCRG00005023420)	dvl3a (ENSLCRG00005023423)	copb2 (ENSLCRG00005023427)	rbp2b (ENSLCRG00005023513)	rbp1.1 (ENSLCRG00005023514)	NMNAT3 (ENSLCRG00005023515)	clstn2a (ENSLCRG00005023521)	spsb4a (ENSLCRG00005023571)	zgc:136870 (ENSLCRG00005023572)	slc25a36a (ENSLCRG00005023573)	MARCHF2 (ENSLCRG00005023574)	rab11bb (ENSLCRG00005023575)	TIMM44 (ENSLCRG00005023576)	ENSLCRG00005023589	ENSLCRG00005023590 ##22	uba52 (ENSLCRG00005023591)	HOMER3 (ENSLCRG00005023593)	upf1 (ENSLCRG00005023597)	pgpep1 (ENSLCRG00005023637)	jund (ENSLCRG00005023638)	RAB3A (ENSLCRG00005023639)	ENSLCRG00005023641	ifi30 (ENSLCRG00005023645)	pik3r2 (ENSLCRG00005023647)	ENSLCRG00005023658	rps15 (ENSLCRG00005023659)	ENSLCRG00005023663	crtc1a (ENSLCRG00005023665)	MED26 (ENSLCRG00005023666)	ENSLCRG00005023667
Perciformes	ANCESTRAL SPECIES	5	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.f	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d.b	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Cottioidei	ANCESTRAL SPECIES	15	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.f	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d.b	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Lumpfish	MODERN SPECIES	8	and3 (ENSCLMG00005007900)	pcyt1aa (ENSCLMG00005007903)	ap2m1a (ENSCLMG00005007959)	dvl3a (ENSCLMG00005007983)	copb2 (ENSCLMG00005008047)	rbp2b (ENSCLMG00005009140)	rbp1.1 (ENSCLMG00005009141)	NMNAT3 (ENSCLMG00005009145)	clstn2a (ENSCLMG00005009148)	spsb4a (ENSCLMG00005009153)	slc25a36a (ENSCLMG00005009154)	MARCHF2 (ENSCLMG00005009155)	rab11bb (ENSCLMG00005009159)	TIMM44 (ENSCLMG00005009244)	CTXN1 (ENSCLMG00005009257)	CERS4 (ENSCLMG00005009260) ##22	uba52 (ENSCLMG00005009262)	ENSCLMG00005009265	ENSCLMG00005009267	upf1 (ENSCLMG00005009276)	pgpep1 (ENSCLMG00005009453)	jund (ENSCLMG00005009472)	RAB3A (ENSCLMG00005009473)	ENSCLMG00005009477	ifi30 (ENSCLMG00005009629)	pik3r2 (ENSCLMG00005009644)	MAST3 (ENSCLMG00005011111)	ENSCLMG00005011114	crtc1a (ENSCLMG00005011115)	MED26 (ENSCLMG00005011116)	ENSCLMG00005011118
Stickleback	MODERN SPECIES	2	slc25a12 (ENSGACG00000015426)	DYNC1I2 (ENSGACG00000015431)	and3 (ENSGACG00000015438)	pcyt1aa (ENSGACG00000015442)	ap2m1a (ENSGACG00000015444)	dvl3a (ENSGACG00000015451)	copb2 (ENSGACG00000015455)	NMNAT3 (ENSGACG00000015460)	clstn2a (ENSGACG00000015468)	spsb4a (ENSGACG00000015471)	slc25a36a (ENSGACG00000015473)	MARCHF2 (ENSGACG00000015477)	rab11bb (ENSGACG00000015479)	TIMM44 (ENSGACG00000015487)	ENSGACG00000015495	CERS4 (ENSGACG00000015496) ##22	ENSGACG00000015501	upf1 (ENSGACG00000015504)	pgpep1 (ENSGACG00000015509)	jund (ENSGACG00000015511)	RAB3A (ENSGACG00000015513)	ENSGACG00000015515	ifi30 (ENSGACG00000015519)	pik3r2 (ENSGACG00000015520)	MAST3 (ENSGACG00000015523)	ENSGACG00000015527	ENSGACG00000015528	crtc1a (ENSGACG00000015531)	MED26 (ENSGACG00000015536)	ENSGACG00000015538	rps15 (ENSGACG00000015549)
Perciformes_a	ANCESTRAL SPECIES	17	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.f	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d.b	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Channel bull blenny	MODERN SPECIES	8	and3 (ENSCGOG00000012296)	pcyt1aa (ENSCGOG00000012307)	ap2m1a (ENSCGOG00000012546)	dvl3a (ENSCGOG00000012594)	copb2 (ENSCGOG00000013176)	rbp2b (ENSCGOG00000014126)	rbp1.1 (ENSCGOG00000014153)	NMNAT3 (ENSCGOG00000014162)	clstn2a (ENSCGOG00000014188)	spsb4a (ENSCGOG00000014851)	slc25a36a (ENSCGOG00000014854)	MARCHF2 (ENSCGOG00000014860)	rab11bb (ENSCGOG00000014861)	TIMM44 (ENSCGOG00000014872)	CTXN1 (ENSCGOG00000015256)	ENSCGOG00000015260 ##22	uba52 (ENSCGOG00000015279)	HOMER3 (ENSCGOG00000015280)	upf1 (ENSCGOG00000015291)	pgpep1 (ENSCGOG00000015544)	RAB3A (ENSCGOG00000015547)	jund (ENSCGOG00000015574)	ENSCGOG00000015645	ifi30 (ENSCGOG00000017696)	pik3r2 (ENSCGOG00000017734)	ENSCGOG00000018385	ENSCGOG00000018388	crtc1a (ENSCGOG00000018393)	MED26 (ENSCGOG00000018398)	ENSCGOG00000018400	rps15 (ENSCGOG00000018403)
Pike perch	MODERN SPECIES	55	and3 (ENSSLUG00000023638)	pcyt1aa (ENSSLUG00000023650)	ap2m1a (ENSSLUG00000023669)	dvl3a (ENSSLUG00000023682)	copb2 (ENSSLUG00000023763)	rbp2b (ENSSLUG00000024153)	rbp1.1 (ENSSLUG00000001482)	NMNAT3 (ENSSLUG00000001488)	clstn2a (ENSSLUG00000001936)	spsb4a (ENSSLUG00000003305)	slc25a36a (ENSSLUG00000003329)	MARCHF2 (ENSSLUG00000003365)	rab11bb (ENSSLUG00000003397)	TIMM44 (ENSSLUG00000003631)	CTXN1 (ENSSLUG00000004074)	ENSSLUG00000004097 ##22	HOMER3 (ENSSLUG00000004119)	upf1 (ENSSLUG00000004153)	pgpep1 (ENSSLUG00000004242)	jund (ENSSLUG00000004248)	RAB3A (ENSSLUG00000004254)	ENSSLUG00000004338	ifi30 (ENSSLUG00000004635)	pik3r2 (ENSSLUG00000004691)	MAST3 (ENSSLUG00000005343)	ENSSLUG00000005443	ENSSLUG00000005448	crtc1a (ENSSLUG00000005455)	ENSSLUG00000005469	ENSSLUG00000005482	rps15 (ENSSLUG00000005506)
Percomorphaceae_D	ANCESTRAL SPECIES	6	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00990000206484	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Anabantaria	ANCESTRAL SPECIES	8	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Zig-zag eel	MODERN SPECIES	8	ENSMAMG00000006685	ENSMAMG00000006654	ENSMAMG00000006605	copb2 (ENSMAMG00000006528)	rbp2b (ENSMAMG00000006509)	rbp1.1 (ENSMAMG00000006493)	NMNAT3 (ENSMAMG00000006484)	clstn2a (ENSMAMG00000006456)	zgc:136870 (ENSMAMG00000006438)	spsb4a (ENSMAMG00000006429)	ENSMAMG00000024459	ENSMAMG00000006383	rab11bb (ENSMAMG00000006378)	ENSMAMG00000006367	ENSMAMG00000006355	ENSMAMG00000006327 ##22	uba52 (ENSMAMG00000006321)	ENSMAMG00000006299	upf1 (ENSMAMG00000006229)	pgpep1 (ENSMAMG00000006217)	jund (ENSMAMG00000006203)	ENSMAMG00000006185	ENSMAMG00000006043	ifi30 (ENSMAMG00000006032)	pik3r2 (ENSMAMG00000005988)	ENSMAMG00000005957	ENSMAMG00000005932	crtc1a (ENSMAMG00000024320)	ENSMAMG00000005892	ENSMAMG00000005876	ENSMAMG00000005870
Anabantoidei	ANCESTRAL SPECIES	18	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475	ENSGT00940000158174.b
Climbing perch	MODERN SPECIES	8	ENSATEG00000017306	ENSATEG00000017335	ENSATEG00000017381	copb2 (ENSATEG00000017430)	rbp2b (ENSATEG00000017508)	rbp1.1 (ENSATEG00000017531)	NMNAT3 (ENSATEG00000017549)	clstn2a (ENSATEG00000017562)	zgc:136870 (ENSATEG00000025289)	spsb4a (ENSATEG00000017626)	ENSATEG00000017649	ENSATEG00000017679	rab11bb (ENSATEG00000017696)	TIMM44 (ENSATEG00000029811)	ENSATEG00000017721	ENSATEG00000017729 ##22	ENSATEG00000017747	upf1 (ENSATEG00000017867)	pgpep1 (ENSATEG00000017928)	jund (ENSATEG00000017942)	ENSATEG00000016038	ENSATEG00000017963	ifi30 (ENSATEG00000017995)	pik3r2 (ENSATEG00000018016)	ENSATEG00000018067	ENSATEG00000018108	crtc1a (ENSATEG00000028370)	ENSATEG00000018140	ENSATEG00000018146	ENSATEG00000018167	ENSATEG00000018179
Siamese fighting fish	MODERN SPECIES	8	DYNC1I2 (ENSBSLG00000025146)	and3 (ENSBSLG00000025301)	pcyt1aa (ENSBSLG00000025304)	ap2m1a (ENSBSLG00000025307)	dvl3a (ENSBSLG00000025490)	copb2 (ENSBSLG00000025730)	rbp2b (ENSBSLG00000025784)	rbp1.1 (ENSBSLG00000025786)	NMNAT3 (ENSBSLG00000025789)	clstn2a (ENSBSLG00000026017)	spsb4a (ENSBSLG00000026084)	slc25a36a (ENSBSLG00000026093)	MARCHF2 (ENSBSLG00000026100)	rab11bb (ENSBSLG00000026102)	TIMM44 (ENSBSLG00000026140)	CERS4 (ENSBSLG00000026180) ##22	HOMER3 (ENSBSLG00000026184)	upf1 (ENSBSLG00000026232)	jund (ENSBSLG00000026263)	RAB3A (ENSBSLG00000026265)	ENSBSLG00000026267	ifi30 (ENSBSLG00000026282)	pik3r2 (ENSBSLG00000026300)	ENSBSLG00000026340	ENSBSLG00000026355	crtc1a (ENSBSLG00000026358)	MED26 (ENSBSLG00000026361)	ENSBSLG00000026364	rps15 (ENSBSLG00000026371)	DPP9 (ENSBSLG00000026398)	angptl4 (ENSBSLG00000026413)
Carangaria	ANCESTRAL SPECIES	5	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Seriola	ANCESTRAL SPECIES		ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Yellowtail amberjack	MODERN SPECIES	3160	ap2m1a (ENSSLDG00000020332)	dvl3a (ENSSLDG00000020388)	ENSSLDG00000020405	copb2 (ENSSLDG00000020433)	rbp2b (ENSSLDG00000020513)	rbp1.1 (ENSSLDG00000020526)	NMNAT3 (ENSSLDG00000020535)	clstn2a (ENSSLDG00000020561)	spsb4a (ENSSLDG00000020633)	zgc:136870 (ENSSLDG00000020640)	slc25a36a (ENSSLDG00000020649)	MARCHF2 (ENSSLDG00000020670)	rab11bb (ENSSLDG00000020676)	TIMM44 (ENSSLDG00000020686)	CTXN1 (ENSSLDG00000020704)	CERS4 (ENSSLDG00000020711) ##22	uba52 (ENSSLDG00000020739)	HOMER3 (ENSSLDG00000020840)	upf1 (ENSSLDG00000020868)	pgpep1 (ENSSLDG00000020900)	jund (ENSSLDG00000020919)	RAB3A (ENSSLDG00000020924)	ENSSLDG00000020948	ifi30 (ENSSLDG00000021006)	pik3r2 (ENSSLDG00000021025)	MAST3 (ENSSLDG00000021107)	ENSSLDG00000021162	ENSSLDG00000021167	crtc1a (ENSSLDG00000021185)	MED26 (ENSSLDG00000021208)	ENSSLDG00000021218
Greater amberjack	MODERN SPECIES	83	pcyt1aa (ENSSDUG00000013919)	ap2m1a (ENSSDUG00000013877)	dvl3a (ENSSDUG00000013838)	copb2 (ENSSDUG00000013764)	rbp2b (ENSSDUG00000013743)	rbp1.1 (ENSSDUG00000013706)	NMNAT3 (ENSSDUG00000013697)	clstn2a (ENSSDUG00000013636)	zgc:136870 (ENSSDUG00000013620)	spsb4a (ENSSDUG00000013610)	slc25a36a (ENSSDUG00000013585)	MARCHF2 (ENSSDUG00000013566)	rab11bb (ENSSDUG00000013558)	TIMM44 (ENSSDUG00000013532)	CTXN1 (ENSSDUG00000013526)	CERS4 (ENSSDUG00000013462) ##22	uba52 (ENSSDUG00000013436)	HOMER3 (ENSSDUG00000013419)	upf1 (ENSSDUG00000013320)	pgpep1 (ENSSDUG00000013291)	jund (ENSSDUG00000013277)	RAB3A (ENSSDUG00000013259)	ENSSDUG00000013184	ifi30 (ENSSDUG00000013153)	pik3r2 (ENSSDUG00000013068)	MAST3 (ENSSDUG00000012940)	ENSSDUG00000012917	crtc1a (ENSSDUG00000012878)	MED26 (ENSSDUG00000012866)	ENSSDUG00000012852	rps15 (ENSSDUG00000012842)
Barramundi perch	MODERN SPECIES	69	pcyt1aa (ENSLCAG00010020649)	ap2m1a (ENSLCAG00010020671)	dvl3a (ENSLCAG00010020676)	copb2 (ENSLCAG00010020835)	rbp2b (ENSLCAG00010021293)	rbp1.1 (ENSLCAG00010021298)	NMNAT3 (ENSLCAG00010021301)	clstn2a (ENSLCAG00010021304)	spsb4a (ENSLCAG00010021315)	zgc:136870 (ENSLCAG00010021318)	slc25a36a (ENSLCAG00010021326)	MARCHF2 (ENSLCAG00010021331)	rab11bb (ENSLCAG00010021340)	TIMM44 (ENSLCAG00010021394)	CTXN1 (ENSLCAG00010021496)	CERS4 (ENSLCAG00010021499) ##22	uba52 (ENSLCAG00010021500)	HOMER3 (ENSLCAG00010021508)	upf1 (ENSLCAG00010021515)	pgpep1 (ENSLCAG00010021529)	jund (ENSLCAG00010021531)	RAB3A (ENSLCAG00010021537)	ENSLCAG00010021553	ifi30 (ENSLCAG00010021559)	pik3r2 (ENSLCAG00010021561)	MAST3 (ENSLCAG00010021565)	ENSLCAG00010021568	crtc1a (ENSLCAG00010021571)	MED26 (ENSLCAG00010021575)	ENSLCAG00010021577	rps15 (ENSLCAG00010021579)
Pleuronectoidei	ANCESTRAL SPECIES	1	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00990000206484	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475	ENSGT00940000158174.b
Turbot	MODERN SPECIES	19	ENSSMAG00000004543	ENSSMAG00000004560	dvl3a (ENSSMAG00000004618)	copb2 (ENSSMAG00000004635)	rbp2b (ENSSMAG00000020703)	rbp1.1 (ENSSMAG00000004704)	NMNAT3 (ENSSMAG00000022760)	clstn2a (ENSSMAG00000004743)	spsb4a (ENSSMAG00000004857)	ENSSMAG00000004876	slc25a36a (ENSSMAG00000004893)	ENSSMAG00000004909	rab11bb (ENSSMAG00000004922)	ENSSMAG00000004929	ENSSMAG00000004955	ENSSMAG00000004963 ##22	ENSSMAG00000005036	upf1 (ENSSMAG00000005055)	pgpep1 (ENSSMAG00000005111)	jund (ENSSMAG00000005129)	ENSSMAG00000005141	ENSSMAG00000005152	ifi30 (ENSSMAG00000005240)	pik3r2 (ENSSMAG00000005255)	ENSSMAG00000005306	ENSSMAG00000005337	crtc1a (ENSSMAG00000005344)	ENSSMAG00000027684	ENSSMAG00000005375	ENSSMAG00000005382	ENSSMAG00000005413
Ovalentaria	ANCESTRAL SPECIES	5	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00770000121812	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a
Atherinomorphae	ANCESTRAL SPECIES	4	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000161095
Cyprinodontiformes	ANCESTRAL SPECIES	5	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00940000154395.a.a.a.b.a	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497
Aplocheiloidei	ANCESTRAL SPECIES	19	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00940000154395.a.a.a.b.a	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497
Mangrove rivulus	MODERN SPECIES	64	ENSKMAG00000008520	pcyt1aa (ENSKMAG00000008554)	ap2m1a (ENSKMAG00000008592)	dvl3a (ENSKMAG00000008628)	copb2 (ENSKMAG00000008663)	rbp2b (ENSKMAG00000008760)	rbp1.1 (ENSKMAG00000008788)	NMNAT3 (ENSKMAG00000008800)	clstn2a (ENSKMAG00000008838)	spsb4a (ENSKMAG00000008932)	slc25a36a (ENSKMAG00000008956)	MARCHF2 (ENSKMAG00000009002)	rab11bb (ENSKMAG00000009033)	TIMM44 (ENSKMAG00000009060)	CTXN1 (ENSKMAG00000009121)	CERS4 (ENSKMAG00000009138) ##22	ENSKMAG00000009157	PDC (ENSKMAG00000009178)	kifap3b (ENSKMAG00000009197)	ENSKMAG00000009283	ENSKMAG00000009312	OLFML2B (ENSKMAG00000009333)	ENSKMAG00000009357	dusp12 (ENSKMAG00000009384)	TPR (ENSKMAG00000009412)	odr4 (ENSKMAG00000009510)	dpydb (ENSKMAG00000009544)	ptbp2b (ENSKMAG00000009644)	CHD7 (ENSKMAG00000009724)	rab2a (ENSKMAG00000009799)	ca8 (ENSKMAG00000009850)
Turquoise killifish	MODERN SPECIES	1618	ONECUT3 (ENSNFUG00015017880)	LINGO3 (ENSNFUG00015017886)	ENSNFUG00015017891	dvl3a (ENSNFUG00015017928)	COPB2 (ENSNFUG00015018238)	rbp2b (ENSNFUG00015019621)	NMNAT3 (ENSNFUG00015019671)	NMNAT3 (ENSNFUG00015019677)	clstn2a (ENSNFUG00015019721)	SPSB4 (ENSNFUG00015020062)	slc25a36a (ENSNFUG00015020070)	MARCH2 (ENSNFUG00015020081)	Nfu_g_1_020481 (ENSNFUG00015020092)	TIMM44 (ENSNFUG00015020126)	CTXN1 (ENSNFUG00015020167)	CERS4 (ENSNFUG00015020174) ##22	OLPD-R (ENSNFUG00015020202)	KIFAP3B (ENSNFUG00015020250)	ENSNFUG00015021367	OLFML2BB (ENSNFUG00015021376)	dusp12 (ENSNFUG00015021389)	prg4a (ENSNFUG00015021413)	TPRA (ENSNFUG00015021506)	C2H1ORF27 (ENSNFUG00015023001)	dpydb (ENSNFUG00015023011)	PTBP2B (ENSNFUG00015023143)	CHD7 (ENSNFUG00015023198)	ENSNFUG00015023291	RAB2A (ENSNFUG00015023295)	ENSNFUG00015023305	CA8 (ENSNFUG00015023308)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00940000154395.a.a.a.b.a	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497
NAME_4	ANCESTRAL SPECIES	9	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000154882
Mummichog	MODERN SPECIES	2326	DYNC1I2 (ENSFHEG00000018845)	and3 (ENSFHEG00000018762)	pcyt1aa (ENSFHEG00000018749)	ap2m1a (ENSFHEG00000018703)	dvl3a (ENSFHEG00000018651)	copb2 (ENSFHEG00000018594)	rbp1.1 (ENSFHEG00000018522)	NMNAT3 (ENSFHEG00000018505)	clstn2a (ENSFHEG00000018475)	spsb4a (ENSFHEG00000018422)	slc25a36a (ENSFHEG00000018399)	MARCHF2 (ENSFHEG00000018375)	rab11bb (ENSFHEG00000018353)	TIMM44 (ENSFHEG00000018339)	CTXN1 (ENSFHEG00000018270)	ENSFHEG00000018261 ##22
Sheepshead minnow	MODERN SPECIES	336								ENSCVAG00000016794	clstn2a (ENSCVAG00000016907)	spsb4a (ENSCVAG00000016921)	ENSCVAG00000016936	slc25a36a (ENSCVAG00000016985)	MARCHF2 (ENSCVAG00000016997)	rab11bb (ENSCVAG00000017021)	TIMM44 (ENSCVAG00000017060)	ENSCVAG00000017123 ##22	PDC (ENSCVAG00000017136)	kifap3b (ENSCVAG00000017254)	ENSCVAG00000017271	OLFML2B (ENSCVAG00000017284)	dusp12 (ENSCVAG00000017311)	TPR (ENSCVAG00000017444)	odr4 (ENSCVAG00000017457)	dpydb (ENSCVAG00000017559)	ptbp2b (ENSCVAG00000017566)	CHD7 (ENSCVAG00000017584)	rab2a (ENSCVAG00000017623)	ca8 (ENSCVAG00000017645)	tox (ENSCVAG00000000458)	cryz (ENSCVAG00000017754)	DARS2 (ENSCVAG00000017840)
Poeciliinae	ANCESTRAL SPECIES	6	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00940000154395.a.a.a.b.a	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497
Poecilia	ANCESTRAL SPECIES	19	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00940000154395.a.a.a.b.a	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497
NAME_6	ANCESTRAL SPECIES	228	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22
Sailfin molly	MODERN SPECIES	1959											slc25a36a (ENSPLAG00000001581)	MARCHF2 (ENSPLAG00000001587)	rab11bb (ENSPLAG00000001598)	TIMM44 (ENSPLAG00000001606)	CTXN1 (ENSPLAG00000001608)	ENSPLAG00000001628 ##22
Amazon molly	MODERN SPECIES	422	slc25a12 (ENSPFOG00000009599)	DYNC1I2 (ENSPFOG00000009232)	and3 (ENSPFOG00000009203)	pcyt1aa (ENSPFOG00000009131)	ap2m1a (ENSPFOG00000009058)	dvl3a (ENSPFOG00000008888)	copb2 (ENSPFOG00000008606)	rbp1.1 (ENSPFOG00000023452)	NMNAT3 (ENSPFOG00000008559)	clstn2a (ENSPFOG00000007644)	spsb4a (ENSPFOG00000007613)	slc25a36a (ENSPFOG00000007512)	MARCHF2 (ENSPFOG00000007476)	rab11bb (ENSPFOG00000024114)	TIMM44 (ENSPFOG00000007215)	CERS4 (ENSPFOG00000007021) ##22	ENSPFOG00000006956	OLFML2B (ENSPFOG00000006875)	ENSPFOG00000020348	dusp12 (ENSPFOG00000006822)	prg4a (ENSPFOG00000006768)	ENSPFOG00000006006	odr4 (ENSPFOG00000005978)	dpydb (ENSPFOG00000005785)	ptbp2b (ENSPFOG00000005646)	CHD7 (ENSPFOG00000004891)	rab2a (ENSPFOG00000004786)	ca8 (ENSPFOG00000004700)	tox (ENSPFOG00000004558)	ENSPFOG00000004532	cryz (ENSPFOG00000004423)
Guppy	MODERN SPECIES	447	pcyt1aa (ENSPREG00000014022)	ap2m1a (ENSPREG00000014057)	dvl3a (ENSPREG00000014078)	ENSPREG00000014095	copb2 (ENSPREG00000014106)	rbp1.1 (ENSPREG00000014144)	NMNAT3 (ENSPREG00000014156)	clstn2a (ENSPREG00000014196)	spsb4a (ENSPREG00000014221)	ENSPREG00000014238	ENSPREG00000014251	MARCHF2 (ENSPREG00000014259)	rab11bb (ENSPREG00000014269)	TIMM44 (ENSPREG00000014295)	CTXN1 (ENSPREG00000014346)	ENSPREG00000014369 ##22	PDC (ENSPREG00000014388)	kifap3b (ENSPREG00000014417)	ENSPREG00000014481	ENSPREG00000014488	OLFML2B (ENSPREG00000014496)	dusp12 (ENSPREG00000014521)	prg4a (ENSPREG00000014538)	ENSPREG00000014558	ENSPREG00000014589	odr4 (ENSPREG00000014667)	dpydb (ENSPREG00000014688)	ptbp2b (ENSPREG00000014711)	CHD7 (ENSPREG00000014744)	ENSPREG00000014865	ENSPREG00000014870
Platyfish	MODERN SPECIES	20	DYNC1I2 (ENSXMAG00000019032)	and3 (ENSXMAG00000019029)	pcyt1aa (ENSXMAG00000019014)	ap2m1a (ENSXMAG00000019001)	dvl3a (ENSXMAG00000018981)	copb2 (ENSXMAG00000018937)	rbp1.1 (ENSXMAG00000018933)	NMNAT3 (ENSXMAG00000018929)	clstn2a (ENSXMAG00000018890)	spsb4a (ENSXMAG00000018887)	slc25a36a (ENSXMAG00000018866)	MARCHF2 (ENSXMAG00000018861)	rab11bb (ENSXMAG00000011926)	TIMM44 (ENSXMAG00000018819)	CTXN1 (ENSXMAG00000026623)	ENSXMAG00000018778 ##22	PDC (ENSXMAG00000018762)	kifap3b (ENSXMAG00000018739)	ENSXMAG00000026629	OLFML2B (ENSXMAG00000018729)	ENSXMAG00000027606	dusp12 (ENSXMAG00000018722)	prg4a (ENSXMAG00000018717)	TPR (ENSXMAG00000018684)	odr4 (ENSXMAG00000018668)	dpydb (ENSXMAG00000018645)	ptbp2b (ENSXMAG00000018642)	CHD7 (ENSXMAG00000018590)	rab2a (ENSXMAG00000024267)	ca8 (ENSXMAG00000018565)	tox (ENSXMAG00000018560)
Oryzias	ANCESTRAL SPECIES	12	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000161095
Oryzias_b	ANCESTRAL SPECIES	8	ENSGT00940000155442.o	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000161095
Indian medaka	MODERN SPECIES	10	DYNC1I2 (ENSOMEG00000018565)	and3 (ENSOMEG00000018463)	pcyt1aa (ENSOMEG00000018447)	ap2m1a (ENSOMEG00000018414)	dvl3a (ENSOMEG00000018321)	copb2 (ENSOMEG00000018165)	rbp2b (ENSOMEG00000018095)	rbp1.1 (ENSOMEG00000018083)	NMNAT3 (ENSOMEG00000018039)	clstn2a (ENSOMEG00000017977)	spsb4a (ENSOMEG00000017906)	slc25a36a (ENSOMEG00000017859)	MARCHF2 (ENSOMEG00000017834)	rab11bb (ENSOMEG00000017806)	TIMM44 (ENSOMEG00000017767)	ENSOMEG00000017667 ##22	PDC (ENSOMEG00000017603)	kifap3b (ENSOMEG00000017545)	ENSOMEG00000017421	dusp12 (ENSOMEG00000017380)	ENSOMEG00000017301	prg4a (ENSOMEG00000017284)	ENSOMEG00000017267	odr4 (ENSOMEG00000017193)	dpydb (ENSOMEG00000017058)	ptbp2b (ENSOMEG00000016950)	CHD7 (ENSOMEG00000016881)	rab2a (ENSOMEG00000016752)	ca8 (ENSOMEG00000016716)	tox (ENSOMEG00000016675)	ENSOMEG00000016646
Javanese ricefish	MODERN SPECIES	8	DYNC1I2 (ENSOJAG00000017447)	and3 (ENSOJAG00000017410)	pcyt1aa (ENSOJAG00000017391)	ap2m1a (ENSOJAG00000017316)	dvl3a (ENSOJAG00000017146)	copb2 (ENSOJAG00000016214)	rbp2b (ENSOJAG00000016169)	rbp1.1 (ENSOJAG00000016154)	NMNAT3 (ENSOJAG00000016137)	clstn2a (ENSOJAG00000015617)	spsb4a (ENSOJAG00000015580)	slc25a36a (ENSOJAG00000015573)	MARCHF2 (ENSOJAG00000015558)	rab11bb (ENSOJAG00000015481)	TIMM44 (ENSOJAG00000014954)	ENSOJAG00000014871 ##22	PDC (ENSOJAG00000014844)	kifap3b (ENSOJAG00000014522)	ENSOJAG00000014489	OLFML2B (ENSOJAG00000014470)	dusp12 (ENSOJAG00000014454)	prg4a (ENSOJAG00000014427)	TPR (ENSOJAG00000011778)	odr4 (ENSOJAG00000011649)	ptbp2b (ENSOJAG00000009624)	rab2a (ENSOJAG00000022968)	ca8 (ENSOJAG00000022960)	tox (ENSOJAG00000022955)	ENSOJAG00000022952	cryz (ENSOJAG00000022906)	DARS2 (ENSOJAG00000022820)
Oryzias_a	ANCESTRAL SPECIES	7	ENSGT00390000005067.b	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000156236.a.b	ENSGT00390000003574.b	ENSGT00940000154149.b.a.h	ENSGT00940000157757.g.b	ENSGT00930000151041	ENSGT00530000063751.a.b	ENSGT00730000111014.o.a	ENSGT00390000012568	ENSGT00500000044896	ENSGT01050000244924.a.b.h	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000154882
Japanese Medaka HdrR	MODERN SPECIES	8	and3 (ENSORLG00000014208)	pcyt1aa (ENSORLG00000014200)	ap2m1a (ENSORLG00000014164)	dvl3a (ENSORLG00000014122)	copb2 (ENSORLG00000014074)	rbp1.1 (ENSORLG00000014005)	rbp2b (ENSORLG00000028914)	clstn2a (ENSORLG00000022231)	ENSORLG00000026151	spsb4a (ENSORLG00000013981)	slc25a36a (ENSORLG00000013978)	ENSORLG00000013951	rab11bb (ENSORLG00000013938)	TIMM44 (ENSORLG00000013927)	ENSORLG00000026451	ENSORLG00000013903 ##22	pdca (ENSORLG00000013896)	kifap3b (ENSORLG00000013884)	ENSORLG00000024886	ENSORLG00000013860	dusp12 (ENSORLG00000013816)	prg4a (ENSORLG00000013785)	ENSORLG00000013763	odr4 (ENSORLG00000013679)	dpydb (ENSORLG00000013626)	ptbp2b (ENSORLG00000013557)	CHD7 (ENSORLG00000013492)	rab2a (ENSORLG00000013432)	ca8 (ENSORLG00000013410)	tox (ENSORLG00000013382)	cryz (ENSORLG00000013362)
Chinese medaka	MODERN SPECIES	522	and3 (ENSOSIG00000020533)	pcyt1aa (ENSOSIG00000020532)	ap2m1a (ENSOSIG00000020528)	dvl3a (ENSOSIG00000020491)	copb2 (ENSOSIG00000020483)	rbp2b (ENSOSIG00000020472)	rbp1.1 (ENSOSIG00000020468)	NMNAT3 (ENSOSIG00000020465)	clstn2a (ENSOSIG00000017760)	spsb4a (ENSOSIG00000017585)	slc25a36a (ENSOSIG00000017582)	MARCHF2 (ENSOSIG00000017579)	rab11bb (ENSOSIG00000017577)	ENSOSIG00000017572	TIMM44 (ENSOSIG00000017570)	ENSOSIG00000017515 ##22	PDC (ENSOSIG00000017506)	kifap3b (ENSOSIG00000017501)	ENSOSIG00000017499	OLFML2B (ENSOSIG00000017493)	dusp12 (ENSOSIG00000017483)	prg4a (ENSOSIG00000017475)	TPR (ENSOSIG00000017181)	dpydb (ENSOSIG00000017085)	ptbp2b (ENSOSIG00000012898)	CHD7 (ENSOSIG00000012096)	rab2a (ENSOSIG00000012069)	ca8 (ENSOSIG00000012067)	ENSOSIG00000012066	ENSOSIG00000012065	cryz (ENSOSIG00000012019)
Ovalentaria_B	ANCESTRAL SPECIES	6	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Pomacentridae	ANCESTRAL SPECIES	6	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Pomacentridae_A	ANCESTRAL SPECIES	18	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Amphiprion	ANCESTRAL SPECIES	56	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Orange clownfish	MODERN SPECIES	1	pcyt1aa (ENSAPEG00000016980)	ap2m1a (ENSAPEG00000016947)	dvl3a (ENSAPEG00000016879)	copb2 (ENSAPEG00000016809)	rbp2b (ENSAPEG00000016791)	rbp1.1 (ENSAPEG00000016783)	NMNAT3 (ENSAPEG00000016768)	clstn2a (ENSAPEG00000016707)	zgc:136870 (ENSAPEG00000016668)	spsb4a (ENSAPEG00000016656)	slc25a36a (ENSAPEG00000016623)	MARCHF2 (ENSAPEG00000016600)	rab11bb (ENSAPEG00000016590)	TIMM44 (ENSAPEG00000016535)	CTXN1 (ENSAPEG00000016527)	ENSAPEG00000016515 ##22	uba52 (ENSAPEG00000016505)	HOMER3 (ENSAPEG00000016482)	upf1 (ENSAPEG00000016344)	pgpep1 (ENSAPEG00000016314)	jund (ENSAPEG00000016308)	RAB3A (ENSAPEG00000016297)	ENSAPEG00000016224	ifi30 (ENSAPEG00000016204)	pik3r2 (ENSAPEG00000016119)	ENSAPEG00000016073	ENSAPEG00000016053	crtc1a (ENSAPEG00000016019)	MED26 (ENSAPEG00000016014)	ENSAPEG00000015970	rps15 (ENSAPEG00000015950)
Clown anemonefish	MODERN SPECIES	694											slc25a36a (ENSAOCG00000018206)	MARCHF2 (ENSAOCG00000018227)	rab11bb (ENSAOCG00000018239)	TIMM44 (ENSAOCG00000018254)	CTXN1 (ENSAOCG00000018267)	ENSAOCG00000018339 ##22	uba52 (ENSAOCG00000018365)	HOMER3 (ENSAOCG00000018407)	upf1 (ENSAOCG00000018519)	pgpep1 (ENSAOCG00000018549)	jund (ENSAOCG00000018564)	RAB3A (ENSAOCG00000018573)	ENSAOCG00000001336	ENSAOCG00000018626	ifi30 (ENSAOCG00000018652)	pik3r2 (ENSAOCG00000001345)	ENSAOCG00000018850	ENSAOCG00000002362	crtc1a (ENSAOCG00000018918)	MED26 (ENSAOCG00000018938)	ENSAOCG00000018981
Spiny chromis	MODERN SPECIES	158								clstn2a (ENSAPOG00000023252)	zgc:136870 (ENSAPOG00000023257)	spsb4a (ENSAPOG00000023306)	slc25a36a (ENSAPOG00000023367)	MARCHF2 (ENSAPOG00000023418)	rab11bb (ENSAPOG00000023455)	TIMM44 (ENSAPOG00000023542)	CTXN1 (ENSAPOG00000023565)	ENSAPOG00000023625 ##22	HOMER3 (ENSAPOG00000023680)	upf1 (ENSAPOG00000023773)	pgpep1 (ENSAPOG00000023806)	jund (ENSAPOG00000023818)	RAB3A (ENSAPOG00000000673)	ENSAPOG00000023917	ifi30 (ENSAPOG00000023955)	pik3r2 (ENSAPOG00000024009)	ENSAPOG00000024069	myl1 (ENSAPOG00000024090)	CPS1 (ENSAPOG00000024457)	ENSAPOG00000024494
Bicolor damselfish	MODERN SPECIES	1215							xpo7 (ENSSPAG00000011560)	pbdc1 (ENSSPAG00000011515)	zgc:136870 (ENSSPAG00000011499)	spsb4a (ENSSPAG00000011489)	slc25a36a (ENSSPAG00000011459)	MARCHF2 (ENSSPAG00000011441)	rab11bb (ENSSPAG00000011419)	TIMM44 (ENSSPAG00000011387)	CTXN1 (ENSSPAG00000011381)	ENSSPAG00000011357 ##22
Cichlidae	ANCESTRAL SPECIES	2	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	7	ENSGT00940000155442.o	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	4	ENSGT00940000155442.o	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000181786	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a
Haplochromini	ANCESTRAL SPECIES	2	ENSGT00940000155442.o	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000181786	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a
Burton s mouthbrooder	MODERN SPECIES	306	DYNC1I2 (ENSHBUG00000015379)	pcyt1aa (ENSHBUG00000015337)	ap2m1a (ENSHBUG00000015302)	dvl3a (ENSHBUG00000015268)	copb2 (ENSHBUG00000015177)	rbp2b (ENSHBUG00000014989)	rbp1.1 (ENSHBUG00000014944)	NMNAT3 (ENSHBUG00000014910)	clstn2a (ENSHBUG00000014896)	spsb4a (ENSHBUG00000014842)	zgc:136870 (ENSHBUG00000014834)	slc25a36a (ENSHBUG00000014826)	MARCHF2 (ENSHBUG00000000436)	rab11bb (ENSHBUG00000014777)	TIMM44 (ENSHBUG00000014769)	ENSHBUG00000014765 ##22	HOMER3 (ENSHBUG00000014740)	ENSHBUG00000014718	upf1 (ENSHBUG00000014694)	pgpep1 (ENSHBUG00000000426)	jund (ENSHBUG00000014447)	RAB3A (ENSHBUG00000014437)	ENSHBUG00000014429	ifi30 (ENSHBUG00000014409)	pik3r2 (ENSHBUG00000014380)	ENSHBUG00000014224	ENSHBUG00000011494	crtc1a (ENSHBUG00000011475)	MED26 (ENSHBUG00000011460)	ENSHBUG00000011449	rps15 (ENSHBUG00000011425)
Haplochromini_A	ANCESTRAL SPECIES	3	ENSGT00940000155442.o	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164492.b	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b
Haplochromini_B	ANCESTRAL SPECIES	12	ENSGT00940000155442.o.a	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT01030000234629.C.a	ENSGT00940000162556.D.b.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.b	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475	ENSGT00940000158174.b
Eastern happy	MODERN SPECIES	9	DYNC1I2 (ENSACLG00000006306)	pcyt1aa (ENSACLG00000006334)	ap2m1a (ENSACLG00000006350)	dvl3a (ENSACLG00000006365)	copb2 (ENSACLG00000006378)	rbp2b (ENSACLG00000006428)	rbp1.1 (ENSACLG00000006586)	NMNAT3 (ENSACLG00000006594)	clstn2a (ENSACLG00000006605)	spsb4a (ENSACLG00000007040)	zgc:136870 (ENSACLG00000007054)	slc25a36a (ENSACLG00000007062)	MARCHF2 (ENSACLG00000007071)	rab11bb (ENSACLG00000007076)	TIMM44 (ENSACLG00000007080)	CERS4 (ENSACLG00000007099) ##22	HOMER3 (ENSACLG00000007133)	upf1 (ENSACLG00000007181)	pgpep1 (ENSACLG00000007217)	jund (ENSACLG00000007226)	RAB3A (ENSACLG00000007231)	ENSACLG00000007240	ifi30 (ENSACLG00000007526)	pik3r2 (ENSACLG00000007541)	ENSACLG00000007576	ENSACLG00000007990	crtc1a (ENSACLG00000007997)	MED26 (ENSACLG00000008014)	ENSACLG00000008019	rps15 (ENSACLG00000008029)	DPP9 (ENSACLG00000008036)
Zebra mbuna	MODERN SPECIES	1100	DYNC1I2 (ENSMZEG00005002671)	pcyt1aa (ENSMZEG00005002705)	ap2m1a (ENSMZEG00005002719)	dvl3a (ENSMZEG00005002747)	copb2 (ENSMZEG00005002832)	rbp2b (ENSMZEG00005002902)	rbp1.1 (ENSMZEG00005003083)	NMNAT3 (ENSMZEG00005003102)	clstn2a (ENSMZEG00005003196)	spsb4a (ENSMZEG00005003260)	zgc:136870 (ENSMZEG00005003269)	slc25a36a (ENSMZEG00005003295)	MARCHF2 (ENSMZEG00005003339)	rab11bb (ENSMZEG00005003352)	TIMM44 (ENSMZEG00005003361)	CERS4 (ENSMZEG00005003420) ##22	ENSMZEG00005003430	HOMER3 (ENSMZEG00005003452)	upf1 (ENSMZEG00005003489)	pgpep1 (ENSMZEG00005003549)	jund (ENSMZEG00005003568)	RAB3A (ENSMZEG00005003592)	ENSMZEG00005003607	ifi30 (ENSMZEG00005003671)	pik3r2 (ENSMZEG00005003704)	ENSMZEG00005003753	ENSMZEG00005003826	crtc1a (ENSMZEG00005003843)	MED26 (ENSMZEG00005003877)	ENSMZEG00005003884	rps15 (ENSMZEG00005003902)
P. nyererei	MODERN SPECIES	299	pcyt1aa (ENSPNYG00000004498)	ap2m1a (ENSPNYG00000004468)	dvl3a (ENSPNYG00000004421)	copb2 (ENSPNYG00000004364)	rbp2b (ENSPNYG00000004334)	rbp1.1 (ENSPNYG00000004312)	NMNAT3 (ENSPNYG00000004294)	clstn2a (ENSPNYG00000004231)	zgc:136870 (ENSPNYG00000004207)	spsb4a (ENSPNYG00000004191)	slc25a36a (ENSPNYG00000004157)	MARCHF2 (ENSPNYG00000004130)	rab11bb (ENSPNYG00000004098)	TIMM44 (ENSPNYG00000004070)	uba52 (ENSPNYG00000003911)	ENSPNYG00000003807 ##22	HOMER3 (ENSPNYG00000003778)	upf1 (ENSPNYG00000003694)	pgpep1 (ENSPNYG00000003672)	jund (ENSPNYG00000003650)	RAB3A (ENSPNYG00000003624)	ENSPNYG00000003553	ENSPNYG00000003518	ifi30 (ENSPNYG00000003489)	pik3r2 (ENSPNYG00000003416)	ENSPNYG00000003345	ENSPNYG00000003324	crtc1a (ENSPNYG00000003288)	MED26 (ENSPNYG00000003282)	ENSPNYG00000003255	rps15 (ENSPNYG00000003242)
Lyretail cichlid	MODERN SPECIES	300	DYNC1I2 (ENSNBRG00000022681)	pcyt1aa (ENSNBRG00000022706)	ap2m1a (ENSNBRG00000022722)	dvl3a (ENSNBRG00000022744)	copb2 (ENSNBRG00000022777)	rbp2b (ENSNBRG00000022801)	rbp1.1 (ENSNBRG00000022813)	NMNAT3 (ENSNBRG00000022863)	clstn2a (ENSNBRG00000022882)	spsb4a (ENSNBRG00000022916)	zgc:136870 (ENSNBRG00000022923)	slc25a36a (ENSNBRG00000000318)	MARCHF2 (ENSNBRG00000000345)	rab11bb (ENSNBRG00000000372)	TIMM44 (ENSNBRG00000000376)	CERS4 (ENSNBRG00000000500) ##22	uba52 (ENSNBRG00000000583)	HOMER3 (ENSNBRG00000000598)	ENSNBRG00000000632	upf1 (ENSNBRG00000000670)	pgpep1 (ENSNBRG00000000761)	jund (ENSNBRG00000000825)	RAB3A (ENSNBRG00000000839)	ENSNBRG00000000846	ifi30 (ENSNBRG00000000901)	pik3r2 (ENSNBRG00000000914)	ENSNBRG00000000988	ENSNBRG00000001060	crtc1a (ENSNBRG00000001070)	MED26 (ENSNBRG00000001138)	ENSNBRG00000001145
Nile tilapia	MODERN SPECIES	9	DYNC1I2 (ENSONIG00000010393)	pcyt1aa (ENSONIG00000010401)	ap2m1a (ENSONIG00000010404)	dvl3a (ENSONIG00000010406)	copb2 (ENSONIG00000042202)	rbp2b (ENSONIG00000010410)	NMNAT3 (ENSONIG00000033479)	clstn2a (ENSONIG00000010418)	zgc:136870 (ENSONIG00000010431)	ENSONIG00000043177	spsb4a (ENSONIG00000010430)	slc25a36a (ENSONIG00000010432)	MARCHF2 (ENSONIG00000010434)	ENSONIG00000035378	TIMM44 (ENSONIG00000010437)	CERS4 (ENSONIG00000010441) ##22	ENSONIG00000031764	HOMER3 (ENSONIG00000010448)	upf1 (ENSONIG00000010452)	pgpep1 (ENSONIG00000035992)	jund (ENSONIG00000021437)	RAB3A (ENSONIG00000040136)	ENSONIG00000010458	ifi30 (ENSONIG00000010474)	pik3r2 (ENSONIG00000010477)	ENSONIG00000010481	ENSONIG00000010487	crtc1a (ENSONIG00000010488)	MED26 (ENSONIG00000010491)	ENSONIG00000010492	rps15 (ENSONIG00000010495)
Midas cichlid	MODERN SPECIES	235	ap2m1a (ENSACIG00000019325)	dvl3a (ENSACIG00000019339)	copb2 (ENSACIG00000019369)	rbp2b (ENSACIG00000019401)	rbp1.1 (ENSACIG00000019416)	NMNAT3 (ENSACIG00000019503)	clstn2a (ENSACIG00000019526)	ENSACIG00000019567	spsb4a (ENSACIG00000019576)	zgc:136870 (ENSACIG00000019585)	slc25a36a (ENSACIG00000019600)	MARCHF2 (ENSACIG00000019618)	rab11bb (ENSACIG00000019631)	TIMM44 (ENSACIG00000019644)	CTXN1 (ENSACIG00000019666)	ENSACIG00000019677 ##22	uba52 (ENSACIG00000019707)	HOMER3 (ENSACIG00000019924)	lzic (ENSACIG00000019942)	upf1 (ENSACIG00000019949)	pgpep1 (ENSACIG00000019992)	jund (ENSACIG00000020001)	RAB3A (ENSACIG00000020019)	ENSACIG00000020265	IFI30 (ENSACIG00000020300)	pik3r2 (ENSACIG00000020433)	ENSACIG00000020452	ENSACIG00000020471	ENSACIG00000020474	crtc1a (ENSACIG00000020482)	MED26 (ENSACIG00000020502)
Pinecone sodierfish	MODERN SPECIES	8	ap2m1a (ENSMMDG00005018230)	dvl3a (ENSMMDG00005018119)	copb2 (ENSMMDG00005016919)	rbp2b (ENSMMDG00005016897)	rbp1.1 (ENSMMDG00005016895)	NMNAT3 (ENSMMDG00005016893)	ENSMMDG00005016891	clstn2a (ENSMMDG00005016797)	zgc:136870 (ENSMMDG00005016783)	spsb4a (ENSMMDG00005016781)	slc25a36a (ENSMMDG00005016779)	MARCHF2 (ENSMMDG00005016775)	rab11bb (ENSMMDG00005016770)	TIMM44 (ENSMMDG00005016705)	CTXN1 (ENSMMDG00005016693)	ENSMMDG00005016688 ##22	uba52 (ENSMMDG00005016682)	HOMER3 (ENSMMDG00005016621)	upf1 (ENSMMDG00005015515)	pgpep1 (ENSMMDG00005015307)	jund (ENSMMDG00005015297)	RAB3A (ENSMMDG00005015295)	ENSMMDG00005015290	ifi30 (ENSMMDG00005015289)	pik3r2 (ENSMMDG00005014416)	MAST3 (ENSMMDG00005014384)	ENSMMDG00005014383	crtc1a (ENSMMDG00005014379)	MED26 (ENSMMDG00005014375)	ENSMMDG00005014369	rps15 (ENSMMDG00005014342)
Cod	MODERN SPECIES	21	ENSGMOG00000007857	ENSGMOG00000007864	copb2 (ENSGMOG00000007877)	rbp2b (ENSGMOG00000035830)	rbp1.1 (ENSGMOG00000026517)	NMNAT3 (ENSGMOG00000007890)	clstn2a (ENSGMOG00000009159)	spsb4a (ENSGMOG00000034486)	slc25a36a (ENSGMOG00000023978)	ENSGMOG00000009200	ENSGMOG00000009211	ENSGMOG00000031425	ENSGMOG00000028248	ENSGMOG00000027799	ENSGMOG00000010623	ENSGMOG00000018197 ##22	ENSGMOG00000024170	ENSGMOG00000000668	ENSGMOG00000000685	ENSGMOG00000000694	ifi30 (ENSGMOG00000010157)	pik3r2 (ENSGMOG00000010166)	ENSGMOG00000027994	crtc1a (ENSGMOG00000010220)	ENSGMOG00000027213	ENSGMOG00000010240	ENSGMOG00000010247	ENSGMOG00000010252	angptl4 (ENSGMOG00000010268)	rps28 (ENSGMOG00000010283)	ENSGMOG00000010292
Protacanthopterygii	ANCESTRAL SPECIES	60	ENSGT00940000157384.a	ENSGT00940000159223.d	ENSGT00950000182903.a.a.d	ENSGT00900000141083.c.a	ENSGT00940000160165.b	ENSGT00940000159675	ENSGT00950000183179.b.b	ENSGT00950000183086.a.a.b.h.b	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a	ENSGT00940000154369.g.a	ENSGT00940000158995.b	ENSGT00940000163126.a.a	ENSGT00390000000051.b	ENSGT00940000154412.C.c.a	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b	ENSGT00940000158081.o.b	ENSGT00940000157413.h	ENSGT00390000015368.a.a.c	ENSGT00940000162806.b.a	ENSGT00940000158959.a.a.a	ENSGT00940000164492.a.a	ENSGT00940000164804.a	ENSGT00940000157050.i.a	ENSGT00940000157166.d	ENSGT00940000161872	ENSGT00390000010652.D.a.b	ENSGT00390000000259.k.a	ENSGT00940000154539.a.b	ENSGT00390000000475
Salmoninae	ANCESTRAL SPECIES	83	ENSGT00940000180772	ENSGT00940000161729.m.a.a	ENSGT00940000157384.a.c	ENSGT00940000159223.d.b	ENSGT00950000182903.a.a.d.f	ENSGT00900000141083.c.a.b	ENSGT00940000160165.b	ENSGT00940000159675.b	ENSGT00950000183086.a.a.b.h.b.c	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a.a	ENSGT00940000154369.g.a.g	ENSGT00940000158995.b.a	ENSGT00940000163126.a.a.c	ENSGT00390000000051.b.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b.g.a	ENSGT00940000158081.o.b.c	ENSGT00940000157413.h.b	ENSGT00390000015368.a.a.c.h	ENSGT00940000162806.b.a.g	ENSGT00940000158959.a.a.a.a	ENSGT00940000164492.a.a.e	ENSGT00940000160620.w.a	ENSGT00940000164804.a.e	ENSGT00940000157050.i.a.d	ENSGT00940000157166.d.d	ENSGT00940000161872.g	ENSGT00390000010652.D.a.b.d.b	ENSGT00390000000259.k.a.d	ENSGT00940000154539.a.b.a
Huchen	DUPLICATION
Huchen	MODERN SPECIES	636								ENSHHUG00000037655	clstn2a (ENSHHUG00000037660)	spsb4a (ENSHHUG00000037714)	ENSHHUG00000037723	slc25a36a (ENSHHUG00000037726)	MARCHF2 (ENSHHUG00000037734)	rab11bb (ENSHHUG00000037740)	TIMM44 (ENSHHUG00000037749)	ENSHHUG00000037767 ##22	uba52 (ENSHHUG00000037841)	HOMER3 (ENSHHUG00000037867)	upf1 (ENSHHUG00000037879)	pgpep1 (ENSHHUG00000037923)	jund (ENSHHUG00000037933)	RAB3A (ENSHHUG00000037938)
Huchen	MODERN SPECIES	430										spsb4a (ENSHHUG00000013651)	slc25a36a (ENSHHUG00000013659)	MARCHF2 (ENSHHUG00000013667)	rab11bb (ENSHHUG00000013675)	TIMM44 (ENSHHUG00000013704)	CTXN1 (ENSHHUG00000013737)	ENSHHUG00000013743 ##22	uba52 (ENSHHUG00000013789)	HOMER3 (ENSHHUG00000014096)	upf1 (ENSHHUG00000014328)	pgpep1 (ENSHHUG00000014353)	jund (ENSHHUG00000014358)	RAB3A (ENSHHUG00000014367)	ENSHHUG00000014434	ifi30 (ENSHHUG00000014453)	pik3r2 (ENSHHUG00000014480)	MAST3 (ENSHHUG00000014602)	ENSHHUG00000014609	ENSHHUG00000014634	ENSHHUG00000014650	ENSHHUG00000014665	crtc1a (ENSHHUG00000014671)
Salmoninae_a	ANCESTRAL SPECIES	2	ENSGT00940000180772	ENSGT00940000161729.m.a.a	ENSGT00940000157384.a.c	ENSGT00940000159223.d.b	ENSGT00950000182903.a.a.d.f	ENSGT00900000141083.c.a.b	ENSGT00940000160165.b	ENSGT00940000159675.b	ENSGT00950000183086.a.a.b.h.b.c	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a.a	ENSGT00940000154369.g.a.g	ENSGT00940000158995.b.a	ENSGT00940000163126.a.a.c	ENSGT00390000000051.b.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b.g.b.b.a	ENSGT00940000158081.o.b.c	ENSGT00940000157413.h.b	ENSGT00390000015368.a.a.c.h	ENSGT00940000162806.b.a.g	ENSGT00940000158959.a.a.a.a	ENSGT00940000164492.a.a.e	ENSGT00940000160620.w.a	ENSGT00940000164804.a.e	ENSGT00940000157050.i.a.d	ENSGT00940000157166.d.d	ENSGT00940000161872.g	ENSGT00390000010652.D.a.b.d.b	ENSGT00390000000259.k.a.d	ENSGT00940000154539.a.b.a
Salmo	ANCESTRAL SPECIES	35	ENSGT00940000161729.m.a.a	ENSGT00940000157384.a.c	ENSGT00940000159223.d.b	ENSGT00950000182903.a.a.d.f	ENSGT00900000141083.c.a.b	ENSGT00940000160165.b	ENSGT00940000159675.b	ENSGT00990000213390	ENSGT00950000183086.a.a.b.h.b.c	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a.a	ENSGT00940000154369.g.a.g	ENSGT00940000158995.b.a	ENSGT00940000163126.a.a.c	ENSGT00390000000051.b.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b.g.b.b.a	ENSGT00940000158081.o.b.c	ENSGT00940000157413.h.b	ENSGT00390000015368.a.a.c.h	ENSGT00940000162806.b.a.g	ENSGT00940000158959.a.a.a.a	ENSGT00940000164492.a.a.e	ENSGT00940000160620.w.a	ENSGT00940000164804.a.e	ENSGT00940000157050.i.a.d	ENSGT00940000157166.d.d	ENSGT00940000161872.g	ENSGT00390000010652.D.a.b.d.b	ENSGT00390000000259.k.a.d	ENSGT00940000154539.a.b.a
Atlantic salmon	MODERN SPECIES	5	ENSSSAG00000074540	copb2 (ENSSSAG00000074067)	RBP2 (ENSSSAG00000074042)	RET1 (ENSSSAG00000074041)	ENSSSAG00000074039	ENSSSAG00000111638	clstn2a (ENSSSAG00000073830)	zgc:136870 (ENSSSAG00000073812)	ENSSSAG00000087769	ENSSSAG00000073809	ENSSSAG00000087588	ENSSSAG00000086180	ENSSSAG00000073798	rab11bb (ENSSSAG00000107231)	ENSSSAG00000073759	ENSSSAG00000073752 ##22	UBIQ (ENSSSAG00000073744)	ENSSSAG00000073735	upf1 (ENSSSAG00000073685)	pgpep1 (ENSSSAG00000073672)	ENSSSAG00000084399	JUND (ENSSSAG00000073669)	ENSSSAG00000073643	mpv17l2 (ENSSSAG00000103221)	ifi30 (ENSSSAG00000073631)	pik3r2 (ENSSSAG00000073374)	MAST3 (ENSSSAG00000073352)	ENSSSAG00000088811	ENSSSAG00000076855	crtc1a (ENSSSAG00000099366)	ENSSSAG00000073324
River trout	MODERN SPECIES	13	pcyt1aa (ENSSTUG00000025829)	AP2M1 (ENSSTUG00000025794)	DVL3 (ENSSTUG00000025749)	copb2 (ENSSTUG00000047339)	rbp1.1 (ENSSTUG00000047325)	ENSSTUG00000047323	clstn2a (ENSSTUG00000046411)	ENSSTUG00000046381	zgc:136870 (ENSSTUG00000046379)	ENSSTUG00000046370	spsb4a (ENSSTUG00000046366)	slc25a36a (ENSSTUG00000046315)	MARCHF2 (ENSSTUG00000046310)	rab11bb (ENSSTUG00000046273)	TIMM44 (ENSSTUG00000045610)	ENSSTUG00000045550 ##22	uba52 (ENSSTUG00000045528)	HOMER3 (ENSSTUG00000045507)	upf1 (ENSSTUG00000045435)	pgpep1 (ENSSTUG00000045411)	jund (ENSSTUG00000045408)	RAB3A (ENSSTUG00000045399)	ENSSTUG00000045342	mpv17l2 (ENSSTUG00000045307)	ifi30 (ENSSTUG00000045291)	pik3r2 (ENSSTUG00000045156)	MAST3 (ENSSTUG00000045055)	ENSSTUG00000045032	crtc1a (ENSSTUG00000044995)	MED26 (ENSSTUG00000044982)	ENSSTUG00000044962
Oncorhynchus	ANCESTRAL SPECIES	11	ENSGT00940000180772	ENSGT00940000161729.m.a.a	ENSGT00940000157384.a.c	ENSGT00940000159223.d.b	ENSGT00950000182903.a.a.d.f	ENSGT00900000141083.c.a.b	ENSGT00940000160165.b	ENSGT00940000159675.b	ENSGT00950000183086.a.a.b.h.b.c	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a.a	ENSGT00940000154369.g.a.g	ENSGT00940000158995.b.a	ENSGT00940000163126.a.a.c	ENSGT00390000000051.b.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.f	ENSGT00940000158081.o.b.c	ENSGT00940000157413.h.b	ENSGT00390000015368.a.a.c.h	ENSGT00940000162806.b.a.g	ENSGT00940000158959.a.a.a.a	ENSGT00940000164492.a.a.e	ENSGT00940000160620.w.a	ENSGT00940000164804.a.e	ENSGT00940000157050.i.a.d	ENSGT00940000157166.d.d	ENSGT00940000161872.g	ENSGT00390000010652.D.a.b.d.b	ENSGT00390000000259.k.a.d	ENSGT00940000154539.a.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	37	ENSGT00940000180772	ENSGT00940000161729.m.a.a	ENSGT00940000157384.a.c	ENSGT00940000159223.d.b	ENSGT00950000182903.a.a.d.f	ENSGT00900000141083.c.a.b	ENSGT00940000160165.b	ENSGT00940000159675.b	ENSGT00950000183086.a.a.b.h.b.c	ENSGT00940000162556.D.b.a	ENSGT01030000234629.C.a.a	ENSGT00940000154369.g.a.g	ENSGT00940000158995.b.a	ENSGT00940000163126.a.a.c	ENSGT00390000000051.b.b	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000153593.e.b.g.b.b.a	ENSGT00940000158081.o.b.c	ENSGT00940000157413.h.b	ENSGT00390000015368.a.a.c.h	ENSGT00940000162806.b.a.g	ENSGT00940000158959.a.a.a.a	ENSGT00940000164492.a.a.e	ENSGT00940000160620.w.a	ENSGT00940000164804.a.e	ENSGT00940000157050.i.a.d	ENSGT00940000157166.d.d	ENSGT00940000161872.g	ENSGT00390000010652.D.a.b.d.b	ENSGT00390000000259.k.a.d	ENSGT00940000154539.a.b.a
Chinook salmon	MODERN SPECIES	1	selenot1a (ENSOTSG00005035229)	SERP1 (ENSOTSG00005035228)	pcyt1aa (ENSOTSG00005035227)	AP2M1 (ENSOTSG00005035211)	DVL3 (ENSOTSG00005035208)	copb2 (ENSOTSG00005034708)	rbp2b (ENSOTSG00005034699)	rbp1.1 (ENSOTSG00005034697)	clstn2a (ENSOTSG00005034298)	zgc:136870 (ENSOTSG00005034297)	spsb4a (ENSOTSG00005034296)	slc25a36a (ENSOTSG00005034288)	MARCHF2 (ENSOTSG00005034282)	rab11bb (ENSOTSG00005034280)	TIMM44 (ENSOTSG00005032758)	ENSOTSG00005032740 ##22	uba52 (ENSOTSG00005032711)	HOMER3 (ENSOTSG00005032705)	upf1 (ENSOTSG00005032079)	pgpep1 (ENSOTSG00005032074)	jund (ENSOTSG00005032073)	RAB3A (ENSOTSG00005032072)	ENSOTSG00005032068	mpv17l2 (ENSOTSG00005032066)	ifi30 (ENSOTSG00005032065)	pik3r2 (ENSOTSG00005031258)	MAST3 (ENSOTSG00005031247)	ENSOTSG00005031245	crtc1a (ENSOTSG00005031243)	MED26 (ENSOTSG00005031241)	ENSOTSG00005031240
Coho salmon	MODERN SPECIES	23	selenot1a (ENSOKIG00005036806)	ENSOKIG00005036801	SERP1 (ENSOKIG00005036785)	pcyt1aa (ENSOKIG00005036745)	AP2M1 (ENSOKIG00005036681)	DVL3 (ENSOKIG00005036594)	ENSOKIG00005035958	rbp1.1 (ENSOKIG00005035895)	clstn2a (ENSOKIG00005034701)	ENSOKIG00005034614	spsb4a (ENSOKIG00005034605)	slc25a36a (ENSOKIG00005034598)	MARCHF2 (ENSOKIG00005034573)	rab11bb (ENSOKIG00005034516)	TIMM44 (ENSOKIG00005034165)	ENSOKIG00005034115 ##22	uba52 (ENSOKIG00005034082)	HOMER3 (ENSOKIG00005034071)	upf1 (ENSOKIG00005033533)	pgpep1 (ENSOKIG00005033478)	jund (ENSOKIG00005033465)	ENSOKIG00005033039	mpv17l2 (ENSOKIG00005033005)	ifi30 (ENSOKIG00005032978)	pik3r2 (ENSOKIG00005032870)	ENSOKIG00005032770	crtc1a (ENSOKIG00005032750)	MED26 (ENSOKIG00005032738)	ENSOKIG00005032699	rps15 (ENSOKIG00005032599)	DPP9 (ENSOKIG00005029450)
Rainbow trout	MODERN SPECIES	29	selenot1a (ENSOMYG00000004828)	ENSOMYG00000076782	ENSOMYG00000058103	pcyt1aa (ENSOMYG00000004765)	ap2m1 (ENSOMYG00000004709)	ENSOMYG00000004665	copb2 (ENSOMYG00000004282)	rbp1 (ENSOMYG00000068944)	clstn2a (ENSOMYG00000003476)	spsb4a (ENSOMYG00000003071)	slc25a36a (ENSOMYG00000003050)	ENSOMYG00000073077	rb11a (ENSOMYG00000003016)	ENSOMYG00000002736	ENSOMYG00000076562	ENSOMYG00000002163 ##22	uba52 (ENSOMYG00000002136)	ENSOMYG00000002121	upf1 (ENSOMYG00000002069)	pgpep1 (ENSOMYG00000001889)	jund (ENSOMYG00000001855)	ENSOMYG00000001849	ENSOMYG00000001762	mpv17l2 (ENSOMYG00000001579)	ifi30 (ENSOMYG00000001539)	pik3r2 (ENSOMYG00000001470)	MAST3 (ENSOMYG00000001409)	ENSOMYG00000013304	crtc1a (ENSOMYG00000013246)	ENSOMYG00000013223	ENSOMYG00000013200
Northern pike	MODERN SPECIES	2	zgc:92744 (ENSELUG00000021578)	pcyt1aa (ENSELUG00000021543)	ap2m1a (ENSELUG00000021515)	dvl3a (ENSELUG00000021493)	copb2 (ENSELUG00000021442)	rbp2b (ENSELUG00000021410)	rbp1.1 (ENSELUG00000021393)	NMNAT3 (ENSELUG00000021366)	clstn2a (ENSELUG00000021303)	spsb4a (ENSELUG00000021197)	slc25a36a (ENSELUG00000021181)	MARCHF2 (ENSELUG00000000931)	rab11bb (ENSELUG00000021148)	TIMM44 (ENSELUG00000021107)	CTXN1 (ENSELUG00000000927)	CERS4 (ENSELUG00000020996) ##22	uba52 (ENSELUG00000027664)	HOMER3 (ENSELUG00000020980)	upf1 (ENSELUG00000020917)	pgpep1 (ENSELUG00000020843)	jund (ENSELUG00000020828)	RAB3A (ENSELUG00000032538)	ENSELUG00000020697	mpv17l2 (ENSELUG00000020559)	ifi30 (ENSELUG00000020539)	pik3r2 (ENSELUG00000001241)	MAST3 (ENSELUG00000020448)	ENSELUG00000026162	crtc1a (ENSELUG00000020357)	MED26 (ENSELUG00000000890)	ENSELUG00000020289
Osteoglossiformes	ANCESTRAL SPECIES	21	ENSGT00940000165199	ENSGT00940000160753	ENSGT00390000017748	ENSGT00940000158649.a.a	ENSGT00940000160926	ENSGT00390000012913.a.b	ENSGT00940000159946.i	ENSGT00940000160036	ENSGT00950000183110.b.a.f	ENSGT00390000013841	ENSGT00940000161913	ENSGT00940000159258.c	ENSGT00940000158995.a.a.b	ENSGT00940000154595	ENSGT00940000154412.C.c	ENSGT01030000234515.a.b.b.b ##22	ENSGT00940000157375.c.b	ENSGT00940000155404.h	ENSGT00390000014361	ENSGT00940000164530.e	ENSGT00390000000777	ENSGT00940000154779.a.a.c	ENSGT00940000158364.a	ENSGT00940000162148	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00730000111147	ENSGT00950000182915.b.b.a.b.a	ENSGT00940000155438.b	ENSGT00940000164495.c.b	ENSGT00390000018044.b.b.f
P. kingsleyae	MODERN SPECIES	17	si:ch211-188c16.1 (ENSPKIG00000002090)	PLPP3 (ENSPKIG00000002028)	bloc1s2 (ENSPKIG00000001971)	USP24 (ENSPKIG00000001856)	dhcr24 (ENSPKIG00000001778)	ENSPKIG00000001741	lurap1 (ENSPKIG00000001725)	ENSPKIG00000001642	OSBPL9 (ENSPKIG00000001482)	ONECUT3 (ENSPKIG00000001423)	ENSPKIG00000001410	ENSPKIG00000001389	marchf2 (ENSPKIG00000001364)	hnrnpm (ENSPKIG00000001332)	CTXN1 (ENSPKIG00000001312)	ENSPKIG00000001257 ##22	ARHGEF18 (ENSPKIG00000001069)	ENSPKIG00000000920	use1 (ENSPKIG00000000876)	mfsd14a2 (ENSPKIG00000000844)	ENSPKIG00000000729	CERS1 (ENSPKIG00000000675) ##22	mydgf (ENSPKIG00000000657)	cope (ENSPKIG00000000623)	loxl5b (ENSPKIG00000000573)	ATCAY (ENSPKIG00000000549)	ZFR2 (ENSPKIG00000000524)	cplx4c (ENSPKIG00000000506)	ENSPKIG00000000493	cherp (ENSPKIG00000000423)	ENSPKIG00000000371
Asian bonytongue	MODERN SPECIES	17	MAU2 (ENSSFOG00015009561)	ARMC6 (ENSSFOG00015033233)	slc25a42 (ENSSFOG00015009477)	tmem161a (ENSSFOG00015009392)	borcs8 (ENSSFOG00015009345)	ENSSFOG00015026145	tm6sf2a (ENSSFOG00015009281)	ARHGAP45 (ENSSFOG00015009214)	ENSSFOG00015009196	ENSSFOG00015032093	PIP5K1C (ENSSFOG00015009080)	rab11bb (ENSSFOG00015006245)	MARCHF2 (ENSSFOG00015009018)	hnrnpm (ENSSFOG00015008815)	CTXN1 (ENSSFOG00015032822)	ENSSFOG00015008767 ##22	ARHGEF18 (ENSSFOG00015008667)	INSR (ENSSFOG00015008555)	use1 (ENSSFOG00015025821)	mfsd14a2 (ENSSFOG00015007072)	ENSSFOG00015028704	CERS1 (ENSSFOG00015008357) ##22	cope (ENSSFOG00015008318)	mydgf (ENSSFOG00015008264)	loxl5b (ENSSFOG00015008206)	ATCAY (ENSSFOG00015008182)	ZFR2 (ENSSFOG00015008157)	cplx4c (ENSSFOG00015030852)	ENSSFOG00015008092	cherp (ENSSFOG00015008022)	ENSSFOG00015007997
Spotted gar	MODERN SPECIES	657	hapln4 (ENSLOCG00000004701)	tm6sf2a (ENSLOCG00000004678)	sbno2a (ENSLOCG00000004643)	gpx4b (ENSLOCG00000004616)	polr2eb (ENSLOCG00000004599)	ARHGAP45 (ENSLOCG00000004582)	tjp3 (ENSLOCG00000004553)	PIP5K1C (ENSLOCG00000004517)	ENSLOCG00000004508	rab11ba (ENSLOCG00000004490)	marchf2 (ENSLOCG00000004473)	hnrnpm (ENSLOCG00000004456)	timm44 (ENSLOCG00000004442)	CTXN1 (ENSLOCG00000017632)	fbn2b (ENSLOCG00000004413)	cers4a (ENSLOCG00000004390) ##22	ENSLOCG00000004375	lsm7 (ENSLOCG00000004356)	sppl2 (ENSLOCG00000004334)	TMPRSS9 (ENSLOCG00000004321)	timm13 (ENSLOCG00000004301)	ENSLOCG00000004281	ENSLOCG00000004259	enc3 (ENSLOCG00000017631)	ENSLOCG00000004244	insrb (ENSLOCG00000004179)	use1 (ENSLOCG00000004161)	MYO9B (ENSLOCG00000004111)	mfsd14a2 (ENSLOCG00000004101)	ENSLOCG00000004092	s1pr4 (ENSLOCG00000017630)
Reedfish	MODERN SPECIES	3	ENSECRG00000019424	ENSECRG00000018354	ENSECRG00000018207	ENSECRG00000018163	ENSECRG00000018130	ENSECRG00000018099	ENSECRG00000018073	ENSECRG00000018056	ENSECRG00000018029	ENSECRG00000017968	ENSECRG00000017818	ENSECRG00000017770	ENSECRG00000017754	ENSECRG00000017740	fbn2b (ENSECRG00000016720)	cers4a (ENSECRG00000016237) ##22	lsm7 (ENSECRG00000016204)	sppl2 (ENSECRG00000016173)	ENSECRG00000016132	ENSECRG00000016015	timm13 (ENSECRG00000015961)	ENSECRG00000015947	enc3 (ENSECRG00000015936)	ncln (ENSECRG00000015892)	s1pr4 (ENSECRG00000015875)	mfsd14a2 (ENSECRG00000015839)	ENSECRG00000015802	use1 (ENSECRG00000015778)	insrb (ENSECRG00000015724)	arhgef18a (ENSECRG00000015672)	ENSECRG00000015646
Sarcopterygii	ANCESTRAL SPECIES	22	ENSGT00940000164644	ENSGT00940000155528	ENSGT00990000211583	ENSGT00390000006553	ENSGT00910000144227	ENSGT00940000154886.a.a	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000162714	ENSGT00940000166580	ENSGT00950000182993.A.a	ENSGT00390000012434	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588
Tetrapoda	ANCESTRAL SPECIES	59	ENSGT00530000063460.B	ENSGT00940000164644	ENSGT00940000155528	ENSGT00940000166621	ENSGT00990000211583	ENSGT00390000006553	ENSGT00910000144227	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000162714	ENSGT00940000166580	ENSGT00950000182993.A.a	ENSGT00390000012434	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588
Amniota	ANCESTRAL SPECIES	63	ENSGT00940000166621	ENSGT00990000211583	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00950000186377	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000162714	ENSGT00940000166580	ENSGT00390000012434	ENSGT00390000007212	ENSGT00940000162442	ENSGT00940000158588
Sauria	DUPLICATION
Sauria	ANCESTRAL SPECIES	50	ENSGT00940000164521	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.s.b	ENSGT00990000211583	ENSGT00390000006553	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00950000186377	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00940000162442	ENSGT00390000007212
Lepidosauria	ANCESTRAL SPECIES	129	ENSGT00530000063460.B	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22
Episquamata	ANCESTRAL SPECIES	18	ENSGT00940000164644	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Laterata	ANCESTRAL SPECIES	56	ENSGT00950000182993.A.a	ENSGT00550000075134	ENSGT00940000158800	ENSGT00940000155332.A	ENSGT01050000244879.a.a.a	ENSGT00390000016128	ENSGT00730000110920.b.a.a	ENSGT00950000182907.b ##31	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Common wall lizard	MODERN SPECIES	9	ENSPMRG00000022255	RFX2 (ENSPMRG00000022305)	ENSPMRG00000022430	PRR22 (ENSPMRG00000022432)	ACER1 (ENSPMRG00000022435)	ENSPMRG00000022439 ##31	ANGPTL4 (ENSPMRG00000022446)	ENSPMRG00000022448	MARCHF2 (ENSPMRG00000022454)	ENSPMRG00000022458	ENSPMRG00000022463	TIMM44 (ENSPMRG00000022478)	CTXN1 (ENSPMRG00000022489)	ENSPMRG00000022496	FBN3 (ENSPMRG00000022515)	ENSPMRG00000022527 ##22	ENSPMRG00000022557	GDF15 (ENSPMRG00000022696)	ENSPMRG00000022701	SSBP4 (ENSPMRG00000022706)	ISYNA1 (ENSPMRG00000022714)	ELL (ENSPMRG00000022721)	MRPL34 (ENSPMRG00000022728)	DDA1 (ENSPMRG00000022730)	ANO8 (ENSPMRG00000022737)	GTPBP3 (ENSPMRG00000022752)	ENSPMRG00000022755	GNA15 (ENSPMRG00000022760)	GNA11 (ENSPMRG00000022765)	ENSPMRG00000022772	ENSPMRG00000022776
Argentine black and white tegu	MODERN SPECIES	109	NRTN (ENSSMRG00000019626)	DUS3L (ENSSMRG00000019625)	MLLT1 (ENSSMRG00000019624)	ACSBG2 (ENSSMRG00000019531)	RFX2 (ENSSMRG00000019530)	PRR22 (ENSSMRG00000019529)	ACER1 (ENSSMRG00000019527)	ENSSMRG00000019526 ##31	ANGPTL4 (ENSSMRG00000019523)	ENSSMRG00000019521	MARCHF2 (ENSSMRG00000019520)	ENSSMRG00000019519	ENSSMRG00000019518	TIMM44 (ENSSMRG00000019517)	FBN3 (ENSSMRG00000017819)	CERS4 (ENSSMRG00000017801) ##22	ENSSMRG00000017791	REEP6 (ENSSMRG00000017789)	ENSSMRG00000017788	ENSSMRG00000017787	ELAVL1 (ENSSMRG00000017783)	MYDGF (ENSSMRG00000017781)	TNFAIP8L1 (ENSSMRG00000017780) ##12	SEMA6B (ENSSMRG00000017769)	ENSSMRG00000017764	ENSSMRG00000017763	ENSSMRG00000017762	HDGFL2 (ENSSMRG00000017749)	GNA11 (ENSSMRG00000017747)	GNA15 (ENSSMRG00000017742)	ENSSMRG00000017736
Toxicofera	ANCESTRAL SPECIES	60	ENSGT00940000160888	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Elapidae	DUPLICATION
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.a ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.a ##22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.a ##22
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	555														ENSNSUG00000017297 ##22	ENSNSUG00000017295	ENSNSUG00000017294 ##22
Mainland tiger snake	MODERN SPECIES	555														ENSNSUG00000017294 ##22	ENSNSUG00000017295	ENSNSUG00000017297 ##22
Eastern brown snake	MODERN SPECIES	266															ENSPTXG00000009965	ENSPTXG00000009966 ##22	ENSPTXG00000009967	ENSPTXG00000009990	ENSPTXG00000009996	ENSPTXG00000010000
Indian cobra	MODERN SPECIES		ENSNNAG00000002391	ENSNNAG00000002397	ENSNNAG00000002405	ENSNNAG00000002413	ENSNNAG00000002417	ANKRD24 (ENSNNAG00000002428)	SIRT6 (ENSNNAG00000002440)	CREB3L3 (ENSNNAG00000002452)	ENSNNAG00000002482	ZBTB7A (ENSNNAG00000002492)	PIAS4 (ENSNNAG00000002501)	EEF2 (ENSNNAG00000002519)	DAPK3 (ENSNNAG00000002558)	ENSNNAG00000002566	ENSNNAG00000002577	ENSNNAG00000002600 ##22	ENSNNAG00000002674	ENSNNAG00000002684	ENSNNAG00000002692	ENSNNAG00000002708	ENSNNAG00000002720	ENSNNAG00000002731	ENSNNAG00000002741	ENSNNAG00000002753	ENSNNAG00000002772	ENSNNAG00000002783	ENSNNAG00000002800	NMRK2 (ENSNNAG00000002808)	ATCAY (ENSNNAG00000002815)	ANGPTL4 (ENSNNAG00000002840)	ENSNNAG00000002847
Elapidae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.b ##22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.b ##22
Acanthophiinae	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.c.a.b ##22
Eastern brown snake	DUPLICATION
Eastern brown snake	MODERN SPECIES	724																ENSPTXG00000016885 ##22
Eastern brown snake	MODERN SPECIES	723																ENSPTXG00000016883 ##22
Elapidae	ANCESTRAL SPECIES	59		ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.b ##22	ENSGT00940000161989	ENSGT00940000161493	ENSGT00940000163917.b
Elapidae_a	ANCESTRAL SPECIES	130	ENSGT00940000164521	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000154886.a.a	ENSGT00940000155876.m	ENSGT00950000185125	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00960000193104	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.b ##22	ENSGT00940000161989
Acanthophiinae	ANCESTRAL SPECIES	159									ENSGT00950000182907.b ##31	ENSGT00940000159478	ENSGT00960000193104	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.b ##22	ENSGT00940000161989
Mainland tiger snake	MODERN SPECIES	1278																ENSNSUG00000011282 ##22
Eastern brown snake	MODERN SPECIES	226								ENSPTXG00000016511 ##31	ANGPTL4 (ENSPTXG00000016508)	ENSPTXG00000016506	HNRNPM (ENSPTXG00000016504)	TIMM44 (ENSPTXG00000016502)	CTXN1 (ENSPTXG00000016500)	ENSPTXG00000016499	ENSPTXG00000016497	ENSPTXG00000016496 ##22	ENSPTXG00000016481	ENSPTXG00000016479	ENSPTXG00000016478	ENSPTXG00000016474
tuatara	MODERN SPECIES	183																ENSSPUG00000012001 ##22
Archelosauria	ANCESTRAL SPECIES	20	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000007212	ENSGT00390000012434
Cryptodira	DUPLICATION
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993.j	ENSGT00940000159993.i.b	ENSGT00940000155418.a.a	ENSGT00940000159993.i.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588
Testudinoidea	ANCESTRAL SPECIES	39	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993.j	ENSGT00940000159993.i.b	ENSGT00940000155418.a.a	ENSGT00940000159993.i.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588
Testudinidae	ANCESTRAL SPECIES	49	ENSGT00940000164644	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000154886.a.a.hb.a	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005016367	ENSGEVG00005016382	ANGPTL4 (ENSGEVG00005016482)	RAB11B (ENSGEVG00005016921)	MARCHF2 (ENSGEVG00005016941)	ENSGEVG00005016957	ENSGEVG00005016972	TIMM44 (ENSGEVG00005017014)	ENSGEVG00005017044	CTXN1 (ENSGEVG00005017067)	FBN3 (ENSGEVG00005017147)	ENSGEVG00005017835	ENSGEVG00005017860	ENSGEVG00005017885	ENSGEVG00005017895	ENSGEVG00005017925 ##22	ENSGEVG00005017948 ##22	ENSGEVG00005018004	ENSGEVG00005018025	LSM7 (ENSGEVG00005018042)	ENSGEVG00005018069	TMPRSS9 (ENSGEVG00005018126)	ENSGEVG00005018158	TIMM13 (ENSGEVG00005018175)	LMNB2 (ENSGEVG00005018184)	ENSGEVG00005018205	LONP1 (ENSGEVG00005018218)	ENSGEVG00005018250	SLC1A6 (ENSGEVG00005018272)	RANBP3 (ENSGEVG00005018328)	ENSGEVG00005018415
Abingdon island giant tortoise	MODERN SPECIES	841	ENSCABG00000021351	PIN1 (ENSCABG00000021350)	UBL5 (ENSCABG00000021349)	FBXL12 (ENSCABG00000021348)	ENSCABG00000021347	ENSCABG00000021346	ENSCABG00000021345	ATP13A1 (ENSCABG00000021336)	MVB12A (ENSCABG00000021322)	DSN1 (ENSCABG00000021320)	PBX4 (ENSCABG00000021317)	LPAR2 (ENSCABG00000021314)	GMIP (ENSCABG00000021313)	NXNL1 (ENSCABG00000021311)	ENSCABG00000021310	ENSCABG00000021308 ##22
Emydidae	ANCESTRAL SPECIES	14	ENSGT01060000249141	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00510000047872
painted turtle	MODERN SPECIES	9																ENSCPBG00000021303 ##22	ENSCPBG00000021306 ##22	ENSCPBG00000021310	LSM7 (ENSCPBG00000021317)	ENSCPBG00000021319	ENSCPBG00000021325	WWC3 (ENSCPBG00000021327)	CLCN4 (ENSCPBG00000021337)	MID1 (ENSCPBG00000021339)	ARHGAP6 (ENSCPBG00000021345)
Three-toed box turtle	MODERN SPECIES	323		ENSTMTG00000018784	ENSTMTG00000018804	ENSTMTG00000018819	ENSTMTG00000018828	NDUFA7 (ENSTMTG00000018834)	ENSTMTG00000018843	ENSTMTG00000018856	ANGPTL4 (ENSTMTG00000018884)	ENSTMTG00000018897	MARCHF2 (ENSTMTG00000018916)	HNRNPM (ENSTMTG00000018939)	TIMM44 (ENSTMTG00000019096)	CTXN1 (ENSTMTG00000019144)	FBN3 (ENSTMTG00000019349)	ENSTMTG00000020619 ##22	ENSTMTG00000020643 ##22	ENSTMTG00000020795	ENSTMTG00000020800	ENSTMTG00000020807	ENSTMTG00000020824	ENSTMTG00000020835	ENSTMTG00000020844	ENSTMTG00000020871	ENSTMTG00000020881	LMNB2 (ENSTMTG00000020896)	RPL36 (ENSTMTG00000020915)	LONP1 (ENSTMTG00000020921)	SLC1A6 (ENSTMTG00000020930)	ENSTMTG00000020942	RANBP3 (ENSTMTG00000020948)
Chinese turtle	MODERN SPECIES	1234						ANGPTL4 (ENSPSIG00000009486)	ENSPSIG00000010242	ENSPSIG00000010905	MARCHF2 (ENSPSIG00000011348)	HNRNPM (ENSPSIG00000011477)	TIMM44 (ENSPSIG00000012758)	CTXN1 (ENSPSIG00000000531)	ENSPSIG00000014464	ENSPSIG00000016223	ENSPSIG00000016309	ENSPSIG00000016314 ##22	ENSPSIG00000016617	LSM7 (ENSPSIG00000017149)	SPPL2B (ENSPSIG00000017155)	ENSPSIG00000017773	LMNB2 (ENSPSIG00000004232)	MLLT1 (ENSPSIG00000004320)	ACER1 (ENSPSIG00000004328)	ENSPSIG00000004364 ##31	ENSPSIG00000004503	ADAMTS10 (ENSPSIG00000004842)	ZAP70 (ENSPSIG00000004880)	ENSPSIG00000004970
Cryptodira	ANCESTRAL SPECIES	19	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993.j	ENSGT00940000159993.i.b	ENSGT00940000155418.a.a	ENSGT00940000159993.i.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000007212
Testudinoidea	ANCESTRAL SPECIES	39	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00960000188000	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993.j	ENSGT00940000159993.i.b	ENSGT00940000155418.a.a	ENSGT00940000159993.i.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000007212
Testudinidae	ANCESTRAL SPECIES	49	ENSGT00940000160888	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000154886.a.a.hb.a	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b
Goode s thornscrub tortoise	MODERN SPECIES	14	ENSGEVG00005016382	ANGPTL4 (ENSGEVG00005016482)	RAB11B (ENSGEVG00005016921)	MARCHF2 (ENSGEVG00005016941)	ENSGEVG00005016957	ENSGEVG00005016972	TIMM44 (ENSGEVG00005017014)	ENSGEVG00005017044	CTXN1 (ENSGEVG00005017067)	FBN3 (ENSGEVG00005017147)	ENSGEVG00005017835	ENSGEVG00005017860	ENSGEVG00005017885	ENSGEVG00005017895	ENSGEVG00005017925 ##22	ENSGEVG00005017948 ##22	ENSGEVG00005018004	ENSGEVG00005018025	LSM7 (ENSGEVG00005018042)	ENSGEVG00005018069	TMPRSS9 (ENSGEVG00005018126)	ENSGEVG00005018158	TIMM13 (ENSGEVG00005018175)	LMNB2 (ENSGEVG00005018184)	ENSGEVG00005018205	LONP1 (ENSGEVG00005018218)	ENSGEVG00005018250	SLC1A6 (ENSGEVG00005018272)	RANBP3 (ENSGEVG00005018328)	ENSGEVG00005018415	ENSGEVG00005018453
Abingdon island giant tortoise	MODERN SPECIES	481																ENSCABG00000010596 ##22	ENSCABG00000010594	LSM7 (ENSCABG00000010593)	ENSCABG00000010591
Emydidae	ANCESTRAL SPECIES	14	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553.i	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c.c ##22	ENSGT01030000234515.a.b.b.c.d ##22	ENSGT00940000163715.b	ENSGT00510000047872
painted turtle	MODERN SPECIES	9															ENSCPBG00000021303 ##22	ENSCPBG00000021306 ##22	ENSCPBG00000021310	LSM7 (ENSCPBG00000021317)	ENSCPBG00000021319	ENSCPBG00000021325	WWC3 (ENSCPBG00000021327)	CLCN4 (ENSCPBG00000021337)	MID1 (ENSCPBG00000021339)	ARHGAP6 (ENSCPBG00000021345)
Three-toed box turtle	MODERN SPECIES	323	ENSTMTG00000018784	ENSTMTG00000018804	ENSTMTG00000018819	ENSTMTG00000018828	NDUFA7 (ENSTMTG00000018834)	ENSTMTG00000018843	ENSTMTG00000018856	ANGPTL4 (ENSTMTG00000018884)	ENSTMTG00000018897	MARCHF2 (ENSTMTG00000018916)	HNRNPM (ENSTMTG00000018939)	TIMM44 (ENSTMTG00000019096)	CTXN1 (ENSTMTG00000019144)	FBN3 (ENSTMTG00000019349)	ENSTMTG00000020619 ##22	ENSTMTG00000020643 ##22	ENSTMTG00000020795	ENSTMTG00000020800	ENSTMTG00000020807	ENSTMTG00000020824	ENSTMTG00000020835	ENSTMTG00000020844	ENSTMTG00000020871	ENSTMTG00000020881	LMNB2 (ENSTMTG00000020896)	RPL36 (ENSTMTG00000020915)	LONP1 (ENSTMTG00000020921)	SLC1A6 (ENSTMTG00000020930)	ENSTMTG00000020942	RANBP3 (ENSTMTG00000020948)	ENSTMTG00000020957
Archosauria	ANCESTRAL SPECIES	16	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00950000186377	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000007212	ENSGT00390000012434
Aves	ANCESTRAL SPECIES	20	ENSGT00390000005847	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a
Neognathae	ANCESTRAL SPECIES	21												ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a
Neognathae_b	ANCESTRAL SPECIES	22																ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.c.b.a.a.a.b.b
Neognathae_c	ANCESTRAL SPECIES	24																ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993.b	ENSGT00940000155418.a.a	ENSGT00940000159993.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e
Golden eagle	MODERN SPECIES	3	ENSACCG00020014657	UHMK1 (ENSACCG00020014642)	UAP1 (ENSACCG00020014625)	DDR2 (ENSACCG00020014598)	HSD17B7 (ENSACCG00020014578)	OLFML2B (ENSACCG00020014565)	ATF6 (ENSACCG00020014542)	ENSACCG00020014486	ENSACCG00020014454	HTATIP2 (ENSACCG00020014439)	RGS5 (ENSACCG00020014426)	RGS4 (ENSACCG00020014415)	RGS18 (ENSACCG00020014385)	RGS21 (ENSACCG00020014376)	RGS1 (ENSACCG00020014364)	ENSACCG00020014349 ##22	ENSACCG00020014334	LSM7 (ENSACCG00020014318)	SPPL2B (ENSACCG00020014307)	ENSACCG00020014235	ENSACCG00020014045	ENSACCG00020013947	TIMM13 (ENSACCG00020013930)	LMNB2 (ENSACCG00020013893)	RPL36 (ENSACCG00020013872)	ENSACCG00020013853	LONP1 (ENSACCG00020013830)	SLC1A6 (ENSACCG00020013794)	RANBP3 (ENSACCG00020013758)	NDUFA11 (ENSACCG00020013705)	ENSACCG00020013683
Kakapo	MODERN SPECIES	13	EPS15L1 (ENSSHBG00005018556)	CALR3 (ENSSHBG00005018541)	C19orf44 (ENSSHBG00005018538)	CHERP (ENSSHBG00005018536)	SLC35E1 (ENSSHBG00005018530)	MED26 (ENSSHBG00005018529)	TMEM38A (ENSSHBG00005018528)	ENSSHBG00005018526	SMIM7 (ENSSHBG00005018524)	SIN3B (ENSSHBG00005018521)	F2RL3 (ENSSHBG00005018516)	CPAMD8 (ENSSHBG00005018501)	HAUS8 (ENSSHBG00005018488)	MYO9B (ENSSHBG00005017297)	USE1 (ENSSHBG00005017255)	ENSSHBG00005017251 ##22	ENSSHBG00005017248	LSM7 (ENSSHBG00005017245)	SPPL2B (ENSSHBG00005017241)	ENSSHBG00005017183	ENSSHBG00005017173	ENSSHBG00005017170	TIMM13 (ENSSHBG00005017163)	LMNB2 (ENSSHBG00005017159)	HNRNPM (ENSSHBG00005017146)	TIMM44 (ENSSHBG00005017134)	DUS3L (ENSSHBG00005017130)	ENSSHBG00005017126	ATCAY (ENSSHBG00005017123)	ENSSHBG00005017120	ENSSHBG00005017116
Passeriformes	ANCESTRAL SPECIES	27	ENSGT00940000160775	ENSGT00940000155528	ENSGT00940000164644	ENSGT00530000063460.B	ENSGT00940000160888	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000158668.c.i.a.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000164143.a	ENSGT00940000163073.e
Great tit	MODERN SPECIES	21	MATK (ENSPMJG00000004576)	ELAVL1 (ENSPMJG00000004561)	ENSPMJG00000004552	ENSPMJG00000004531	POLE4 (ENSPMJG00000004528)	ENSPMJG00000004514	ENSPMJG00000004507	RPS28 (ENSPMJG00000004504)	ENSPMJG00000004478	NDUFA7 (ENSPMJG00000004474)	KANK3 (ENSPMJG00000004465)	ANGPTL4 (ENSPMJG00000004451)	ENSPMJG00000004446	MARCHF2 (ENSPMJG00000004429)	ENSPMJG00000004426	ENSPMJG00000004414 ##22	ENSPMJG00000004413	ENSPMJG00000004411	ENSPMJG00000004407	SPPL2B (ENSPMJG00000004404)	TMPRSS9 (ENSPMJG00000004393)	TIMM13 (ENSPMJG00000004388)	LMNB2 (ENSPMJG00000004383)	RPL36 (ENSPMJG00000004382)	LONP1 (ENSPMJG00000004375)	SLC1A6 (ENSPMJG00000004370)	RANBP3 (ENSPMJG00000004358)	NDUFA11 (ENSPMJG00000004349)	ENSPMJG00000004348	ENSPMJG00000004346
Passeriformes_d	ANCESTRAL SPECIES	28	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000160775	ENSGT00940000155528	ENSGT00940000164644	ENSGT00530000063460.B	ENSGT00940000160888	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000158668.c.i.a.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000164143.a	ENSGT00940000163073.e	ENSGT00940000154596.b.x.c.a.a
Flycatcher	MODERN SPECIES	20	ENSFALG00000011714	MATK (ENSFALG00000011720)	ENSFALG00000011725	ENSFALG00000011740	ENSFALG00000023088	ENSFALG00000023564	ENSFALG00000011771	ENSFALG00000011787	NDUFA7 (ENSFALG00000011794)	KANK3 (ENSFALG00000011816)	ENSFALG00000027521	ANGPTL4 (ENSFALG00000011805)	ENSFALG00000011828	MARCHF2 (ENSFALG00000011843)	ENSFALG00000025676	ENSFALG00000011870 ##22	ENSFALG00000011904	LSM7 (ENSFALG00000011912)	SPPL2B (ENSFALG00000011932)	TMPRSS9 (ENSFALG00000011951)	TIMM13 (ENSFALG00000011956)	LMNB2 (ENSFALG00000011960)	ENSFALG00000011964	ENSFALG00000011975	ENSFALG00000011989	ENSFALG00000011992	ENSFALG00000012010	ENSFALG00000012002	ENSFALG00000012021	ENSFALG00000012025	ENSFALG00000028207
Passeriformes_g	ANCESTRAL SPECIES	29	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000160775	ENSGT00940000155528	ENSGT00940000164644	ENSGT00530000063460.B	ENSGT00940000160888	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000158668.c.i.a.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000164143.a	ENSGT00940000163073.e	ENSGT00940000154596.b.x.c.a.a
Passeroidea	ANCESTRAL SPECIES	29	ENSGT00950000182938.b.b.b.b.b.a	ENSGT00940000160775	ENSGT00940000155528	ENSGT00940000164644	ENSGT00530000063460.B	ENSGT00940000160888	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000158668.c.i.a.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT00940000155273.lb.a	ENSGT00940000155273.lb.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000164143.a	ENSGT00940000163073.e	ENSGT00940000154596.b.x.c.a.a
Common canary	MODERN SPECIES	44	ENSSCAG00000001011	ENSSCAG00000000989	MATK (ENSSCAG00000000977)	ELAVL1 (ENSSCAG00000000962)	ENSSCAG00000000890	ENSSCAG00000000860	ENSSCAG00000000847	ENSSCAG00000000842	ENSSCAG00000000837	NDUFA7 (ENSSCAG00000000829)	KANK3 (ENSSCAG00000000806)	ANGPTL4 (ENSSCAG00000000791)	ENSSCAG00000000780	MARCHF2 (ENSSCAG00000000774)	ENSSCAG00000000768	CERS4 (ENSSCAG00000000761) ##22	ENSSCAG00000000751	ENSSCAG00000000746	LSM7 (ENSSCAG00000000739)	SPPL2B (ENSSCAG00000000726)	ENSSCAG00000000706	ENSSCAG00000000694	ENSSCAG00000000685	TIMM13 (ENSSCAG00000000680)	LMNB2 (ENSSCAG00000000663)	RPL36 (ENSSCAG00000000651)	LONP1 (ENSSCAG00000000414)	SLC1A6 (ENSSCAG00000000322)	RANBP3 (ENSSCAG00000000274)	NDUFA11 (ENSSCAG00000000256)	ENSSCAG00000000245
Zebra finch	MODERN SPECIES	21	RAX2 (ENSTGUG00000000137)	ENSTGUG00000023054	MATK (ENSTGUG00000000123)	ELAVL1 (ENSTGUG00000000118)	ENSTGUG00000000105	ENSTGUG00000019237	POLE4 (ENSTGUG00000000102)	ENSTGUG00000020421	ENSTGUG00000000100	ENSTGUG00000000098	NDUFA7 (ENSTGUG00000018969)	KANK3 (ENSTGUG00000000089)	ANGPTL4 (ENSTGUG00000000086)	ENSTGUG00000029625	MARCHF2 (ENSTGUG00000000080)	ENSTGUG00000000070 ##22	ENSTGUG00000000068	ENSTGUG00000025887	SPPL2B (ENSTGUG00000000063)	TMPRSS9 (ENSTGUG00000000057)	TIMM13 (ENSTGUG00000020964)	LMNB2 (ENSTGUG00000000051)	ENSTGUG00000022738	RPL36 (ENSTGUG00000000049)	LONP1 (ENSTGUG00000000038)	SLC1A6 (ENSTGUG00000000032)	RANBP3 (ENSTGUG00000000023)	ENSTGUG00000024287	NDUFA11 (ENSTGUG00000026250)	ENSTGUG00000000020	ENSTGUG00000029667
Medium ground finch	MODERN SPECIES	144	ENSGFOG00000012410	ENSGFOG00000012415	MATK (ENSGFOG00000012418)	ELAVL1 (ENSGFOG00000012421)	ENSGFOG00000012426	ENSGFOG00000012450	ENSGFOG00000012457	ENSGFOG00000012463	ENSGFOG00000012467	KANK3 (ENSGFOG00000012473)	ANGPTL4 (ENSGFOG00000012478)	ENSGFOG00000012483	MARCHF2 (ENSGFOG00000012488)	ENSGFOG00000012490	ENSGFOG00000012491	CERS4 (ENSGFOG00000012494) ##22	ENSGFOG00000012495	ENSGFOG00000012497	SPPL2B (ENSGFOG00000012498)	TMPRSS9 (ENSGFOG00000012505)	LMNB2 (ENSGFOG00000012515)	RPL36 (ENSGFOG00000012523)	LONP1 (ENSGFOG00000012543)	SLC1A6 (ENSGFOG00000012653)	RANBP3 (ENSGFOG00000012662)	NDUFA11 (ENSGFOG00000012672)	ENSGFOG00000012679	ENSGFOG00000012682
Galloanserae	ANCESTRAL SPECIES	20												ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e
Anatidae	ANCESTRAL SPECIES	57	ENSGT00530000063615.a	ENSGT00940000160050.k	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000159842	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01030000234515.a.b.b.d ##22	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.d.rb	ENSGT00940000158995
Duck	MODERN SPECIES	20	UHRF1 (ENSAPLG00000014609)	FEM1A (ENSAPLG00000000639)	DPP9 (ENSAPLG00000013927)	TNFAIP8L1 (ENSAPLG00000013525) ##12	ENSAPLG00000022793	ENSAPLG00000007778	CHAF1A (ENSAPLG00000008289)	SH3GL1 (ENSAPLG00000002520)	PIAS4 (ENSAPLG00000010840)	EEF2 (ENSAPLG00000010503)	ENSAPLG00000024763	HNRNPM (ENSAPLG00000010149)	TIMM44 (ENSAPLG00000009557)	CTXN1 (ENSAPLG00000001242)	FBN3 (ENSAPLG00000007523)	ENSAPLG00000012475 ##22	ENSAPLG00000022757 ##22	ENSAPLG00000029055	LSM7 (ENSAPLG00000020930)	SPPL2B (ENSAPLG00000011803)	TMPRSS9 (ENSAPLG00000011476)	TIMM13 (ENSAPLG00000016799)	LMNB2 (ENSAPLG00000011044)	RPL36 (ENSAPLG00000018797)	LONP1 (ENSAPLG00000010693)	SLC1A6 (ENSAPLG00000010390)	RANBP3 (ENSAPLG00000010044)	NDUFA11 (ENSAPLG00000010040)	ENSAPLG00000009942	ENSAPLG00000024808	ENSAPLG00000025050
Pink-footed goose	MODERN SPECIES	328	YJU2 (ENSABRG00000013209)	EBI3 (ENSABRG00000013200)	ANKRD24 (ENSABRG00000013170)	SIRT6 (ENSABRG00000013168)	CREB3L3 (ENSABRG00000013162)	MAP2K2 (ENSABRG00000013052)	ZBTB7A (ENSABRG00000013020)	PIAS4 (ENSABRG00000013013)	EEF2 (ENSABRG00000012999)	DAPK3 (ENSABRG00000012994)	NMRK2 (ENSABRG00000012985)	HNRNPM (ENSABRG00000012911)	TIMM44 (ENSABRG00000012895)	CTXN1 (ENSABRG00000012885)	FBN3 (ENSABRG00000012106)	ENSABRG00000011913 ##22	ENSABRG00000011894 ##22
Phasianidae	ANCESTRAL SPECIES	19	ENSGT00940000158588	ENSGT00940000159972	ENSGT00530000063553.b.a	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000163715.b	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927
Japanese quail	MODERN SPECIES	20	SLC1A6 (ENSCJPG00005006091)	LONP1 (ENSCJPG00005006078)	ENSCJPG00005006077	LMNB2 (ENSCJPG00005006076)	TIMM13 (ENSCJPG00005006075)	TMPRSS9 (ENSCJPG00005006072)	KANK3 (ENSCJPG00005006068)	SPPL2B (ENSCJPG00005006065)	LSM7 (ENSCJPG00005006063)	ENSCJPG00005006062	ENSCJPG00005006061 ##22	HNRNPM (ENSCJPG00005006060)	TIMM44 (ENSCJPG00005006059)	CTXN1 (ENSCJPG00005006058)	FBN3 (ENSCJPG00005005593)	ENSCJPG00005005576 ##22
Phasianidae_b	ANCESTRAL SPECIES	20	ENSGT00940000158588	ENSGT00940000159972	ENSGT00530000063553.b.a	ENSGT00390000011943.b	ENSGT00940000160274	ENSGT00390000014000	ENSGT00940000159993	ENSGT00940000158753	ENSGT00510000047872	ENSGT00940000163715.b	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927
Chicken	MODERN SPECIES	20	RPL36 (ENSGALG00010027609)	LMNB2 (ENSGALG00010028375)	TIMM13 (ENSGALG00010028368)	TMPRSS9 (ENSGALG00010028362)	SPPL2C (ENSGALG00010028357)	LSM7 (ENSGALG00010028344)	ENSGALG00010028337	ENSGALG00010028333 ##22	HNRNPM (ENSGALG00010028328)	TIMM44 (ENSGALG00010028316)	ENSGALG00010028311	FBN3 (ENSGALG00010028301)	ENSGALG00010028747	ENSGALG00010028292	ENSGALG00010028297	ENSGALG00010028283 ##22	ENSGALG00010028259	ENSGALG00010028253	MVP (ENSGALG00010028247)	ENSGALG00010028242
Turkey	MODERN SPECIES	23								ENSMGAG00000000721	ENSMGAG00000022186	ENSMGAG00000000729 ##22	ENSMGAG00000018472	ENSMGAG00000019292	ENSMGAG00000000754	ENSMGAG00000000700	ENSMGAG00000000689	ENSMGAG00000014680 ##22	ENSMGAG00000020607	ENSMGAG00000021121	ENSMGAG00000010163	ENSMGAG00000022044	ENSMGAG00000000808	ENSMGAG00000000763	ENSMGAG00000000877	ENSMGAG00000000852	ENSMGAG00000019659	ENSMGAG00000000850	ENSMGAG00000000846	MARCHF2 (ENSMGAG00000000837)	ENSMGAG00000000832	ENSMGAG00000006435	ENSMGAG00000018454
African ostrich	MODERN SPECIES	203											MARCHF2 (ENSSCUG00000002272)	HNRNPM (ENSSCUG00000002277)	TIMM44 (ENSSCUG00000002285)	CTXN1 (ENSSCUG00000002291)	FBN3 (ENSSCUG00000002355)	ENSSCUG00000002395 ##22	ENSSCUG00000002402	ENSSCUG00000002404	ENSSCUG00000002407	ENSSCUG00000002410
Sauria	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.d ##22
Archelosauria	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.d ##22
Archosauria	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.d ##22
Aves	ANCESTRAL SPECIES	20	ENSGT00940000165063	ENSGT00940000164521	ENSGT00530000066804	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a
Neognathae	ANCESTRAL SPECIES	21										ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00940000155418.a.a	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.c.b.a.a.a.b.b
Galloanserae	ANCESTRAL SPECIES	20										ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01040000240927	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.c.b.a.a.a.b.b	ENSGT01030000234669.A.e.a.a.a.a.a.a.a.c.a
Anatidae	ANCESTRAL SPECIES	57	ENSGT00940000160050.k	ENSGT00940000159237	ENSGT00940000160088	ENSGT00940000159261	ENSGT00940000153487.b.a	ENSGT00940000162053	ENSGT01030000234539.a.a.a	ENSGT00940000154662	ENSGT00940000161753	ENSGT00940000159842	ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.c ##22	ENSGT01030000234515.a.b.b.d ##22	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.d.rb	ENSGT00940000158995	ENSGT00940000163126
Duck	MODERN SPECIES	20	FEM1A (ENSAPLG00000000639)	DPP9 (ENSAPLG00000013927)	TNFAIP8L1 (ENSAPLG00000013525) ##12	ENSAPLG00000022793	ENSAPLG00000007778	CHAF1A (ENSAPLG00000008289)	SH3GL1 (ENSAPLG00000002520)	PIAS4 (ENSAPLG00000010840)	EEF2 (ENSAPLG00000010503)	ENSAPLG00000024763	HNRNPM (ENSAPLG00000010149)	TIMM44 (ENSAPLG00000009557)	CTXN1 (ENSAPLG00000001242)	FBN3 (ENSAPLG00000007523)	ENSAPLG00000012475 ##22	ENSAPLG00000022757 ##22	ENSAPLG00000029055	LSM7 (ENSAPLG00000020930)	SPPL2B (ENSAPLG00000011803)	TMPRSS9 (ENSAPLG00000011476)	TIMM13 (ENSAPLG00000016799)	LMNB2 (ENSAPLG00000011044)	RPL36 (ENSAPLG00000018797)	LONP1 (ENSAPLG00000010693)	SLC1A6 (ENSAPLG00000010390)	RANBP3 (ENSAPLG00000010044)	NDUFA11 (ENSAPLG00000010040)	ENSAPLG00000009942	ENSAPLG00000024808	ENSAPLG00000025050	ENSAPLG00000009418
Pink-footed goose	MODERN SPECIES	328	EBI3 (ENSABRG00000013200)	ANKRD24 (ENSABRG00000013170)	SIRT6 (ENSABRG00000013168)	CREB3L3 (ENSABRG00000013162)	MAP2K2 (ENSABRG00000013052)	ZBTB7A (ENSABRG00000013020)	PIAS4 (ENSABRG00000013013)	EEF2 (ENSABRG00000012999)	DAPK3 (ENSABRG00000012994)	NMRK2 (ENSABRG00000012985)	HNRNPM (ENSABRG00000012911)	TIMM44 (ENSABRG00000012895)	CTXN1 (ENSABRG00000012885)	FBN3 (ENSABRG00000012106)	ENSABRG00000011913 ##22	ENSABRG00000011894 ##22
Phasianidae	ANCESTRAL SPECIES	19										ENSGT01040000240927	ENSGT01030000234515.a.b.b.c ##22	ENSGT00950000183158.B.b	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000154595	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00390000012434	ENSGT00940000159238.a	ENSGT00940000163073.e	ENSGT00940000153527.c.b.a.a.a.b.b	ENSGT01030000234669.A.e.a.a.a.a.a.a.a.c.a
Japanese quail	MODERN SPECIES	20											ENSCJPG00005005576 ##22	FBN3 (ENSCJPG00005005593)	CTXN1 (ENSCJPG00005006058)	TIMM44 (ENSCJPG00005006059)	HNRNPM (ENSCJPG00005006060)	ENSCJPG00005006061 ##22	ENSCJPG00005006062	LSM7 (ENSCJPG00005006063)	SPPL2B (ENSCJPG00005006065)	KANK3 (ENSCJPG00005006068)	TMPRSS9 (ENSCJPG00005006072)	TIMM13 (ENSCJPG00005006075)	LMNB2 (ENSCJPG00005006076)	ENSCJPG00005006077	LONP1 (ENSCJPG00005006078)	SLC1A6 (ENSCJPG00005006091)	RANBP3 (ENSCJPG00005006096)	ENSCJPG00005006105	ENSCJPG00005006106	ENSCJPG00005006111	ENSCJPG00005006114
Phasianidae_b	ANCESTRAL SPECIES	20										ENSGT01040000240927	ENSGT01030000234515.a.b.b.c ##22	ENSGT00950000183158.B.b	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000154595	ENSGT01030000234515.a.b.b.d ##22	ENSGT00940000163715.b	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b	ENSGT00530000063553.b.a	ENSGT00940000159972	ENSGT00940000158588	ENSGT00940000163073.e	ENSGT00940000159238.a	ENSGT00390000012434	ENSGT00940000153527.c.b.a.a.a.b.b	ENSGT01030000234669.A.e.a.a.a.a.a.a.a.c.a
Turkey	MODERN SPECIES	23														ENSMGAG00000000721	ENSMGAG00000022186	ENSMGAG00000000729 ##22	ENSMGAG00000018472	ENSMGAG00000019292	ENSMGAG00000000754	ENSMGAG00000000700	ENSMGAG00000000689	ENSMGAG00000014680 ##22	ENSMGAG00000020607	ENSMGAG00000021121	ENSMGAG00000010163	ENSMGAG00000022044	ENSMGAG00000000808	ENSMGAG00000000763	ENSMGAG00000000877	ENSMGAG00000000852	ENSMGAG00000019659
Chicken	MODERN SPECIES	20				ENSGALG00010028242	MVP (ENSGALG00010028247)	ENSGALG00010028253	ENSGALG00010028259	ENSGALG00010028283 ##22	ENSGALG00010028297	ENSGALG00010028292	ENSGALG00010028747	FBN3 (ENSGALG00010028301)	ENSGALG00010028311	TIMM44 (ENSGALG00010028316)	HNRNPM (ENSGALG00010028328)	ENSGALG00010028333 ##22	ENSGALG00010028337	LSM7 (ENSGALG00010028344)	SPPL2C (ENSGALG00010028357)	TMPRSS9 (ENSGALG00010028362)	TIMM13 (ENSGALG00010028368)	LMNB2 (ENSGALG00010028375)	RPL36 (ENSGALG00010027609)	LONP1 (ENSGALG00010027614)	SLC1A6 (ENSGALG00010027636)	RANBP3 (ENSGALG00010027668)	ENSGALG00010027708	ENSGALG00010027710	ENSGALG00010027713	ENSGALG00010027718	BTN1A1 (ENSGALG00010027725)
Lepidosauria	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.d ##22
tuatara	MODERN SPECIES	402																ENSSPUG00000012281 ##22	ENSSPUG00000012265	ENSSPUG00000012260	SPPL2B (ENSSPUG00000012250)	TMPRSS9 (ENSSPUG00000012204)	TIMM13 (ENSSPUG00000012184)	ENSSPUG00000012174	LMNB2 (ENSSPUG00000012162)	ENSSPUG00000012130	SLC1A6 (ENSSPUG00000012067)	ENSSPUG00000012065	ENSSPUG00000012056
Mammalia	ANCESTRAL SPECIES	108	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.t	ENSGT00960000190059	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000165170	ENSGT00940000164512	ENSGT00940000164521	ENSGT00940000160888	ENSGT00530000063460.B	ENSGT00940000164644	ENSGT00940000155528	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22
Theria	ANCESTRAL SPECIES	48	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.a.a ##22
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.a.a ##22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.a.a ##22
Diprotodontia_a	ANCESTRAL SPECIES	51	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a.e	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Common wonbat	MODERN SPECIES	1126	MYO1F (ENSVURG00010024751)	ENSVURG00010024748	ENSVURG00010024745 ##31	ENSVURG00010024740	HNRNPM (ENSVURG00010024736)	MARCHF2 (ENSVURG00010024730)	ENSVURG00010024728	ANGPTL4 (ENSVURG00010024725)	KANK3 (ENSVURG00010024723)	ENSVURG00010024719	ENSVURG00010024717	ENSVURG00010024715	ENSVURG00010024712 ##22	ENSVURG00010024707 ##22	ENSVURG00010024704 ##22	ENSVURG00010024700 ##22	ENSVURG00010024699 ##22	ENSVURG00010024695 ##22	FBN3 (ENSVURG00010024556)	ENSVURG00010024507	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024502	CTXN1 (ENSVURG00010024497)	ENSVURG00010024495
koala	MODERN SPECIES	330	ENSPCIG00000020108	HNRNPM (ENSPCIG00000020115)	MARCHF2 (ENSPCIG00000020366)	ENSPCIG00000020371	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020513	ENSPCIG00000034480	ENSPCIG00000020515	ENSPCIG00000020517	ENSPCIG00000020521	ENSPCIG00000020523 ##22	ENSPCIG00000020526 ##22	ENSPCIG00000020528	ENSPCIG00000020541 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000020799 ##22	FBN3 (ENSPCIG00000020814)	ENSPCIG00000023515	ENSPCIG00000023516	TIMM44 (ENSPCIG00000024984)	CTXN1 (ENSPCIG00000024985)	ENSPCIG00000024986
Opossum	DUPLICATION
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000003801	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003841	ANGPTL4 (ENSMODG00000049909)	KANK3 (ENSMODG00000003881)	ENSMODG00000003890	ENSMODG00000050183	ENSMODG00000037072	ENSMODG00000004320 ##22	ENSMODG00000025633 ##22	ENSMODG00000029681 ##22	ENSMODG00000038212 ##22	ENSMODG00000004533 ##22	ENSMODG00000004875 ##22	ENSMODG00000047978 ##22	ENSMODG00000004916 ##22	FBN3 (ENSMODG00000005011)	ENSMODG00000028064	ENSMODG00000043426	ELAVL1 (ENSMODG00000005041)	TIMM44 (ENSMODG00000005061)	ENSMODG00000005069	ENSMODG00000047141	ENSMODG00000043793	ACTL9 (ENSMODG00000023884)	ENSMODG00000049115	ENSMODG00000038159	MAP2K7 (ENSMODG00000014960)	LRRC8E (ENSMODG00000014962)	EVI5L (ENSMODG00000014976)	ENSMODG00000027477
Opossum	MODERN SPECIES	2	EVI5L (ENSMODG00000014976)	LRRC8E (ENSMODG00000014962)	MAP2K7 (ENSMODG00000014960)	ENSMODG00000038159	ENSMODG00000049115	ACTL9 (ENSMODG00000023884)	ENSMODG00000043793	ENSMODG00000047141	ENSMODG00000005069	TIMM44 (ENSMODG00000005061)	ELAVL1 (ENSMODG00000005041)	ENSMODG00000043426	ENSMODG00000028064	FBN3 (ENSMODG00000005011)	ENSMODG00000004916 ##22	ENSMODG00000047978 ##22	ENSMODG00000004875 ##22	ENSMODG00000004533 ##22	ENSMODG00000038212 ##22	ENSMODG00000029681 ##22	ENSMODG00000025633 ##22	ENSMODG00000004320 ##22	ENSMODG00000037072	ENSMODG00000050183	ENSMODG00000003890	KANK3 (ENSMODG00000003881)	ANGPTL4 (ENSMODG00000049909)	ENSMODG00000003841	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003801	ENSMODG00000003629 ##31
Opossum	MODERN SPECIES	2	ENSMODG00000049115	ACTL9 (ENSMODG00000023884)	ENSMODG00000043793	ENSMODG00000047141	ENSMODG00000005069	TIMM44 (ENSMODG00000005061)	ELAVL1 (ENSMODG00000005041)	ENSMODG00000043426	ENSMODG00000028064	FBN3 (ENSMODG00000005011)	ENSMODG00000004916 ##22	ENSMODG00000047978 ##22	ENSMODG00000004875 ##22	ENSMODG00000004533 ##22	ENSMODG00000038212 ##22	ENSMODG00000029681 ##22	ENSMODG00000025633 ##22	ENSMODG00000004320 ##22	ENSMODG00000037072	ENSMODG00000050183	ENSMODG00000003890	KANK3 (ENSMODG00000003881)	ANGPTL4 (ENSMODG00000049909)	ENSMODG00000003841	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003801	ENSMODG00000003629 ##31	ENSMODG00000037452	MYO1F (ENSMODG00000003610)	ENSMODG00000003530	ENSMODG00000037358
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00940000154595.eb	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Opossum	MODERN SPECIES	2	ENSMODG00000037452	ENSMODG00000003629 ##31	ENSMODG00000003801	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003841	ANGPTL4 (ENSMODG00000049909)	KANK3 (ENSMODG00000003881)	ENSMODG00000003890	ENSMODG00000050183	ENSMODG00000037072	ENSMODG00000004320 ##22	ENSMODG00000025633 ##22	ENSMODG00000029681 ##22	ENSMODG00000038212 ##22	ENSMODG00000004533 ##22	ENSMODG00000004875 ##22	ENSMODG00000047978 ##22	ENSMODG00000004916 ##22	FBN3 (ENSMODG00000005011)	ENSMODG00000028064	ENSMODG00000043426	ELAVL1 (ENSMODG00000005041)	TIMM44 (ENSMODG00000005061)	ENSMODG00000005069	ENSMODG00000047141	ENSMODG00000043793	ACTL9 (ENSMODG00000023884)	ENSMODG00000049115	ENSMODG00000038159	MAP2K7 (ENSMODG00000014960)	LRRC8E (ENSMODG00000014962)
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.eb	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Diprotodontia	ANCESTRAL SPECIES	55	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Diprotodontia_a	ANCESTRAL SPECIES	51	ENSGT00530000063460.B	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a.e	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
koala	MODERN SPECIES	330	MARCHF2 (ENSPCIG00000020366)	ENSPCIG00000020371	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020513	ENSPCIG00000034480	ENSPCIG00000020515	ENSPCIG00000020517	ENSPCIG00000020521	ENSPCIG00000020523 ##22	ENSPCIG00000020526 ##22	ENSPCIG00000020528	ENSPCIG00000020541 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000020799 ##22	FBN3 (ENSPCIG00000020814)	ENSPCIG00000023515	ENSPCIG00000023516	TIMM44 (ENSPCIG00000024984)	CTXN1 (ENSPCIG00000024985)	ENSPCIG00000024986
Common wonbat	MODERN SPECIES	1126	ENSVURG00010024745 ##31	ENSVURG00010024740	HNRNPM (ENSVURG00010024736)	MARCHF2 (ENSVURG00010024730)	ENSVURG00010024728	ANGPTL4 (ENSVURG00010024725)	KANK3 (ENSVURG00010024723)	ENSVURG00010024719	ENSVURG00010024717	ENSVURG00010024715	ENSVURG00010024712 ##22	ENSVURG00010024707 ##22	ENSVURG00010024704 ##22	ENSVURG00010024700 ##22	ENSVURG00010024699 ##22	ENSVURG00010024695 ##22	FBN3 (ENSVURG00010024556)	ENSVURG00010024507	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024502	CTXN1 (ENSVURG00010024497)	ENSVURG00010024495
Wallaby	MODERN SPECIES	642																ENSMEUG00000001452 ##22
Tasmanian devil	MODERN SPECIES		MYO1F (ENSSHAG00000003887)	ENSSHAG00000022999	ENSSHAG00000005528 ##31	ENSSHAG00000026011	HNRNPM (ENSSHAG00000005864)	MARCHF2 (ENSSHAG00000027201)	ENSSHAG00000006816	ANGPTL4 (ENSSHAG00000007289)	ENSSHAG00000008037	RPS28 (ENSSHAG00000022170)	ENSSHAG00000027876	ENSSHAG00000008548 ##22	ENSSHAG00000003870 ##22	ENSSHAG00000001540 ##22	ENSSHAG00000001747 ##22	ENSSHAG00000029219 ##22	FBN3 (ENSSHAG00000005977)	ENSSHAG00000028488	ENSSHAG00000007438	ENSSHAG00000022882	ENSSHAG00000026987	ENSSHAG00000030676	ENSSHAG00000004998	ENSSHAG00000002010	ENSSHAG00000000907	PTBP1 (ENSSHAG00000024397)	ENSSHAG00000021299	PALM (ENSSHAG00000027719)	ENSSHAG00000008219	PRSS57 (ENSSHAG00000008275)	FSTL3 (ENSSHAG00000008333)
Marsupialia	DUPLICATION
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	16							ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.eb	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b	ENSGT00940000163012
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000038159	ENSMODG00000049115	ACTL9 (ENSMODG00000023884)	ENSMODG00000043793	ENSMODG00000047141	ENSMODG00000005069	TIMM44 (ENSMODG00000005061)	ELAVL1 (ENSMODG00000005041)	ENSMODG00000043426	ENSMODG00000028064	FBN3 (ENSMODG00000005011)	ENSMODG00000004916 ##22	ENSMODG00000047978 ##22	ENSMODG00000004875 ##22	ENSMODG00000004533 ##22	ENSMODG00000038212 ##22	ENSMODG00000029681 ##22	ENSMODG00000025633 ##22	ENSMODG00000004320 ##22	ENSMODG00000037072	ENSMODG00000050183	ENSMODG00000003890	KANK3 (ENSMODG00000003881)	ANGPTL4 (ENSMODG00000049909)	ENSMODG00000003841	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003801	ENSMODG00000003629 ##31	ENSMODG00000037452	MYO1F (ENSMODG00000003610)	ENSMODG00000003530
Opossum	MODERN SPECIES	2	ACTL9 (ENSMODG00000023884)	ENSMODG00000043793	ENSMODG00000047141	ENSMODG00000005069	TIMM44 (ENSMODG00000005061)	ELAVL1 (ENSMODG00000005041)	ENSMODG00000043426	ENSMODG00000028064	FBN3 (ENSMODG00000005011)	ENSMODG00000004916 ##22	ENSMODG00000047978 ##22	ENSMODG00000004875 ##22	ENSMODG00000004533 ##22	ENSMODG00000038212 ##22	ENSMODG00000029681 ##22	ENSMODG00000025633 ##22	ENSMODG00000004320 ##22	ENSMODG00000037072	ENSMODG00000050183	ENSMODG00000003890	KANK3 (ENSMODG00000003881)	ANGPTL4 (ENSMODG00000049909)	ENSMODG00000003841	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003801	ENSMODG00000003629 ##31	ENSMODG00000037452	MYO1F (ENSMODG00000003610)	ENSMODG00000003530	ENSMODG00000037358	ZAP70 (ENSMODG00000003486)
Marsupialia_b	DUPLICATION
Marsupialia_b	ANCESTRAL SPECIES	17							ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00940000154595.eb	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870
Diprotodontia	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22
Diprotodontia_a	ANCESTRAL SPECIES	51						ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a.e	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870
Common wonbat	MODERN SPECIES	1126							ENSVURG00010024495	CTXN1 (ENSVURG00010024497)	ENSVURG00010024502	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024507	FBN3 (ENSVURG00010024556)	ENSVURG00010024695 ##22	ENSVURG00010024699 ##22	ENSVURG00010024700 ##22	ENSVURG00010024704 ##22	ENSVURG00010024707 ##22	ENSVURG00010024712 ##22	ENSVURG00010024715	ENSVURG00010024717	ENSVURG00010024719	KANK3 (ENSVURG00010024723)	ANGPTL4 (ENSVURG00010024725)	ENSVURG00010024728	MARCHF2 (ENSVURG00010024730)	HNRNPM (ENSVURG00010024736)	ENSVURG00010024740	ENSVURG00010024745 ##31	ENSVURG00010024748	MYO1F (ENSVURG00010024751)	ENSVURG00010024757
koala	MODERN SPECIES	330							ENSPCIG00000024986	CTXN1 (ENSPCIG00000024985)	TIMM44 (ENSPCIG00000024984)	ENSPCIG00000023516	ENSPCIG00000023515	FBN3 (ENSPCIG00000020814)	ENSPCIG00000020799 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000020541 ##22	ENSPCIG00000020528	ENSPCIG00000020526 ##22	ENSPCIG00000020523 ##22	ENSPCIG00000020521	ENSPCIG00000020517	ENSPCIG00000020515	ENSPCIG00000034480	ENSPCIG00000020513	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020371	MARCHF2 (ENSPCIG00000020366)	HNRNPM (ENSPCIG00000020115)	ENSPCIG00000020108	ENSPCIG00000020107 ##31
Tasmanian devil	MODERN SPECIES		ENSSHAG00000008219	PALM (ENSSHAG00000027719)	ENSSHAG00000021299	PTBP1 (ENSSHAG00000024397)	ENSSHAG00000000907	ENSSHAG00000002010	ENSSHAG00000004998	ENSSHAG00000030676	ENSSHAG00000026987	ENSSHAG00000022882	ENSSHAG00000007438	ENSSHAG00000028488	FBN3 (ENSSHAG00000005977)	ENSSHAG00000029219 ##22	ENSSHAG00000001747 ##22	ENSSHAG00000001540 ##22	ENSSHAG00000003870 ##22	ENSSHAG00000008548 ##22	ENSSHAG00000027876	RPS28 (ENSSHAG00000022170)	ENSSHAG00000008037	ANGPTL4 (ENSSHAG00000007289)	ENSSHAG00000006816	MARCHF2 (ENSSHAG00000027201)	HNRNPM (ENSSHAG00000005864)	ENSSHAG00000026011	ENSSHAG00000005528 ##31	ENSSHAG00000022999	MYO1F (ENSSHAG00000003887)	ADAMTS10 (ENSSHAG00000002176)	ENSSHAG00000004075
Marsupialia_b	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22
Diprotodontia	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22
Diprotodontia_a	ANCESTRAL SPECIES	51					ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a.e	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
koala	MODERN SPECIES	330						ENSPCIG00000024986	CTXN1 (ENSPCIG00000024985)	TIMM44 (ENSPCIG00000024984)	ENSPCIG00000023516	ENSPCIG00000023515	FBN3 (ENSPCIG00000020814)	ENSPCIG00000020799 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000020541 ##22	ENSPCIG00000020528	ENSPCIG00000020526 ##22	ENSPCIG00000020523 ##22	ENSPCIG00000020521	ENSPCIG00000020517	ENSPCIG00000020515	ENSPCIG00000034480	ENSPCIG00000020513	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020371	MARCHF2 (ENSPCIG00000020366)	HNRNPM (ENSPCIG00000020115)	ENSPCIG00000020108	ENSPCIG00000020107 ##31	ENSPCIG00000020105
Common wonbat	MODERN SPECIES	1126						ENSVURG00010024495	CTXN1 (ENSVURG00010024497)	ENSVURG00010024502	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024507	FBN3 (ENSVURG00010024556)	ENSVURG00010024695 ##22	ENSVURG00010024699 ##22	ENSVURG00010024700 ##22	ENSVURG00010024704 ##22	ENSVURG00010024707 ##22	ENSVURG00010024712 ##22	ENSVURG00010024715	ENSVURG00010024717	ENSVURG00010024719	KANK3 (ENSVURG00010024723)	ANGPTL4 (ENSVURG00010024725)	ENSVURG00010024728	MARCHF2 (ENSVURG00010024730)	HNRNPM (ENSVURG00010024736)	ENSVURG00010024740	ENSVURG00010024745 ##31	ENSVURG00010024748	MYO1F (ENSVURG00010024751)	ENSVURG00010024757	ENSVURG00010024762
Marsupialia	ANCESTRAL SPECIES	16	ENSGT00940000164108.b	ENSGT00940000159185	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00940000154595.eb	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Marsupialia_b	ANCESTRAL SPECIES	17	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.eb	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Diprotodontia	ANCESTRAL SPECIES	55	ENSGT00940000158404	ENSGT00940000158870	ENSGT00390000006876	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Diprotodontia_a	ANCESTRAL SPECIES	51	ENSGT00950000182907.b ##31	ENSGT00530000063460.B	ENSGT00940000154595.db.b	ENSGT00940000158995	ENSGT00940000163126	ENSGT00940000159478	ENSGT00940000161178	ENSGT00910000144227.s.a.e	ENSGT00390000006553	ENSGT00940000165170	ENSGT01030000234515.a.b.b.f ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT00950000183158.B.b	ENSGT01010000222539	ENSGT00940000166621	ENSGT00940000155528	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407
Common wonbat	MODERN SPECIES	1126	ENSVURG00010024748	ENSVURG00010024745 ##31	ENSVURG00010024740	HNRNPM (ENSVURG00010024736)	MARCHF2 (ENSVURG00010024730)	ENSVURG00010024728	ANGPTL4 (ENSVURG00010024725)	KANK3 (ENSVURG00010024723)	ENSVURG00010024719	ENSVURG00010024717	ENSVURG00010024715	ENSVURG00010024712 ##22	ENSVURG00010024707 ##22	ENSVURG00010024704 ##22	ENSVURG00010024700 ##22	ENSVURG00010024699 ##22	ENSVURG00010024695 ##22	FBN3 (ENSVURG00010024556)	ENSVURG00010024507	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024502	CTXN1 (ENSVURG00010024497)	ENSVURG00010024495
koala	MODERN SPECIES	330	HNRNPM (ENSPCIG00000020115)	MARCHF2 (ENSPCIG00000020366)	ENSPCIG00000020371	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020513	ENSPCIG00000034480	ENSPCIG00000020515	ENSPCIG00000020517	ENSPCIG00000020521	ENSPCIG00000020523 ##22	ENSPCIG00000020526 ##22	ENSPCIG00000020528	ENSPCIG00000020541 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000020799 ##22	FBN3 (ENSPCIG00000020814)	ENSPCIG00000023515	ENSPCIG00000023516	TIMM44 (ENSPCIG00000024984)	CTXN1 (ENSPCIG00000024985)	ENSPCIG00000024986
Tasmanian devil	MODERN SPECIES		ADAMTS10 (ENSSHAG00000002176)	MYO1F (ENSSHAG00000003887)	ENSSHAG00000022999	ENSSHAG00000005528 ##31	ENSSHAG00000026011	HNRNPM (ENSSHAG00000005864)	MARCHF2 (ENSSHAG00000027201)	ENSSHAG00000006816	ANGPTL4 (ENSSHAG00000007289)	ENSSHAG00000008037	RPS28 (ENSSHAG00000022170)	ENSSHAG00000027876	ENSSHAG00000008548 ##22	ENSSHAG00000003870 ##22	ENSSHAG00000001540 ##22	ENSSHAG00000001747 ##22	ENSSHAG00000029219 ##22	FBN3 (ENSSHAG00000005977)	ENSSHAG00000028488	ENSSHAG00000007438	ENSSHAG00000022882	ENSSHAG00000026987	ENSSHAG00000030676	ENSSHAG00000004998	ENSSHAG00000002010	ENSSHAG00000000907	PTBP1 (ENSSHAG00000024397)	ENSSHAG00000021299	PALM (ENSSHAG00000027719)	ENSSHAG00000008219	PRSS57 (ENSSHAG00000008275)
Opossum	MODERN SPECIES	2	MYO1F (ENSMODG00000003610)	ENSMODG00000037452	ENSMODG00000003629 ##31	ENSMODG00000003801	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003841	ANGPTL4 (ENSMODG00000049909)	KANK3 (ENSMODG00000003881)	ENSMODG00000003890	ENSMODG00000050183	ENSMODG00000037072	ENSMODG00000004320 ##22	ENSMODG00000025633 ##22	ENSMODG00000029681 ##22	ENSMODG00000038212 ##22	ENSMODG00000004533 ##22	ENSMODG00000004875 ##22	ENSMODG00000047978 ##22	ENSMODG00000004916 ##22	FBN3 (ENSMODG00000005011)	ENSMODG00000028064	ENSMODG00000043426	ELAVL1 (ENSMODG00000005041)	TIMM44 (ENSMODG00000005061)	ENSMODG00000005069	ENSMODG00000047141	ENSMODG00000043793	ACTL9 (ENSMODG00000023884)	ENSMODG00000049115	ENSMODG00000038159	MAP2K7 (ENSMODG00000014960)
Marsupialia	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b.e.b.b ##22
Marsupialia_b	ANCESTRAL SPECIES	17						ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00940000154595.eb	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Tasmanian devil	MODERN SPECIES		PALM (ENSSHAG00000027719)	ENSSHAG00000021299	PTBP1 (ENSSHAG00000024397)	ENSSHAG00000000907	ENSSHAG00000002010	ENSSHAG00000004998	ENSSHAG00000030676	ENSSHAG00000026987	ENSSHAG00000022882	ENSSHAG00000007438	ENSSHAG00000028488	FBN3 (ENSSHAG00000005977)	ENSSHAG00000029219 ##22	ENSSHAG00000001747 ##22	ENSSHAG00000001540 ##22	ENSSHAG00000003870 ##22	ENSSHAG00000008548 ##22	ENSSHAG00000027876	RPS28 (ENSSHAG00000022170)	ENSSHAG00000008037	ANGPTL4 (ENSSHAG00000007289)	ENSSHAG00000006816	MARCHF2 (ENSSHAG00000027201)	HNRNPM (ENSSHAG00000005864)	ENSSHAG00000026011	ENSSHAG00000005528 ##31	ENSSHAG00000022999	MYO1F (ENSSHAG00000003887)	ADAMTS10 (ENSSHAG00000002176)	ENSSHAG00000004075	ENSSHAG00000027862
Diprotodontia	ANCESTRAL SPECIES	55							ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185
Diprotodontia_a	ANCESTRAL SPECIES	51				ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a.e	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185
koala	MODERN SPECIES	330				ENSPCIG00000024986	CTXN1 (ENSPCIG00000024985)	TIMM44 (ENSPCIG00000024984)	ENSPCIG00000023516	ENSPCIG00000023515	FBN3 (ENSPCIG00000020814)	ENSPCIG00000020799 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000020541 ##22	ENSPCIG00000020528	ENSPCIG00000020526 ##22	ENSPCIG00000020523 ##22	ENSPCIG00000020521	ENSPCIG00000020517	ENSPCIG00000020515	ENSPCIG00000034480	ENSPCIG00000020513	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020371	MARCHF2 (ENSPCIG00000020366)	HNRNPM (ENSPCIG00000020115)	ENSPCIG00000020108	ENSPCIG00000020107 ##31	ENSPCIG00000020105	MYO1F (ENSPCIG00000020103)	ENSPCIG00000031301
Marsupialia	ANCESTRAL SPECIES	16						ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.eb	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00530000063861.a
Opossum	MODERN SPECIES	2	ENSMODG00000043793	ENSMODG00000047141	ENSMODG00000005069	TIMM44 (ENSMODG00000005061)	ELAVL1 (ENSMODG00000005041)	ENSMODG00000043426	ENSMODG00000028064	FBN3 (ENSMODG00000005011)	ENSMODG00000004916 ##22	ENSMODG00000047978 ##22	ENSMODG00000004875 ##22	ENSMODG00000004533 ##22	ENSMODG00000038212 ##22	ENSMODG00000029681 ##22	ENSMODG00000025633 ##22	ENSMODG00000004320 ##22	ENSMODG00000037072	ENSMODG00000050183	ENSMODG00000003890	KANK3 (ENSMODG00000003881)	ANGPTL4 (ENSMODG00000049909)	ENSMODG00000003841	MARCHF2 (ENSMODG00000003824)	ENSMODG00000003801	ENSMODG00000003629 ##31	ENSMODG00000037452	MYO1F (ENSMODG00000003610)	ENSMODG00000003530	ENSMODG00000037358	ZAP70 (ENSMODG00000003486)	PLPP2 (ENSMODG00000006556)
Marsupialia_b	ANCESTRAL SPECIES	17					ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00940000154595.eb	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185
Diprotodontia	ANCESTRAL SPECIES	55						ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b
Diprotodontia_a	ANCESTRAL SPECIES	51			ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT00940000166621	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b.e.a.b ##22	ENSGT01030000234515.a.b.b.e.b.a.b ##22	ENSGT01030000234515.a.b.b.e.a.a ##22	ENSGT01030000234515.a.b.b.e.b.a.a.c ##22	ENSGT01030000234515.a.b.b.e.b.a.a.d ##22	ENSGT01030000234515.a.b.b.e.b.b ##22	ENSGT01030000234515.a.b.b.f ##22	ENSGT00940000165170	ENSGT00390000006553	ENSGT00910000144227.s.a.e	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.db.b	ENSGT00530000063460.B	ENSGT00950000182907.b ##31	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000159185	ENSGT00940000164108.b
Common wonbat	MODERN SPECIES	1126					ENSVURG00010024495	CTXN1 (ENSVURG00010024497)	ENSVURG00010024502	ELAVL1 (ENSVURG00010024505)	ENSVURG00010024507	FBN3 (ENSVURG00010024556)	ENSVURG00010024695 ##22	ENSVURG00010024699 ##22	ENSVURG00010024700 ##22	ENSVURG00010024704 ##22	ENSVURG00010024707 ##22	ENSVURG00010024712 ##22	ENSVURG00010024715	ENSVURG00010024717	ENSVURG00010024719	KANK3 (ENSVURG00010024723)	ANGPTL4 (ENSVURG00010024725)	ENSVURG00010024728	MARCHF2 (ENSVURG00010024730)	HNRNPM (ENSVURG00010024736)	ENSVURG00010024740	ENSVURG00010024745 ##31	ENSVURG00010024748	MYO1F (ENSVURG00010024751)	ENSVURG00010024757	ENSVURG00010024762	ZAP70 (ENSVURG00010024765)
koala	MODERN SPECIES	330			ENSPCIG00000024986	CTXN1 (ENSPCIG00000024985)	TIMM44 (ENSPCIG00000024984)	ENSPCIG00000023516	ENSPCIG00000023515	FBN3 (ENSPCIG00000020814)	ENSPCIG00000020799 ##22	ENSPCIG00000020796 ##22	ENSPCIG00000015691 ##22	ENSPCIG00000020545 ##22	ENSPCIG00000020541 ##22	ENSPCIG00000020528	ENSPCIG00000020526 ##22	ENSPCIG00000020523 ##22	ENSPCIG00000020521	ENSPCIG00000020517	ENSPCIG00000020515	ENSPCIG00000034480	ENSPCIG00000020513	ANGPTL4 (ENSPCIG00000020509)	ENSPCIG00000020371	MARCHF2 (ENSPCIG00000020366)	HNRNPM (ENSPCIG00000020115)	ENSPCIG00000020108	ENSPCIG00000020107 ##31	ENSPCIG00000020105	MYO1F (ENSPCIG00000020103)	ENSPCIG00000031301	ADAMTS10 (ENSPCIG00000019816)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000021299	PTBP1 (ENSSHAG00000024397)	ENSSHAG00000000907	ENSSHAG00000002010	ENSSHAG00000004998	ENSSHAG00000030676	ENSSHAG00000026987	ENSSHAG00000022882	ENSSHAG00000007438	ENSSHAG00000028488	FBN3 (ENSSHAG00000005977)	ENSSHAG00000029219 ##22	ENSSHAG00000001747 ##22	ENSSHAG00000001540 ##22	ENSSHAG00000003870 ##22	ENSSHAG00000008548 ##22	ENSSHAG00000027876	RPS28 (ENSSHAG00000022170)	ENSSHAG00000008037	ANGPTL4 (ENSSHAG00000007289)	ENSSHAG00000006816	MARCHF2 (ENSSHAG00000027201)	HNRNPM (ENSSHAG00000005864)	ENSSHAG00000026011	ENSSHAG00000005528 ##31	ENSSHAG00000022999	MYO1F (ENSSHAG00000003887)	ADAMTS10 (ENSSHAG00000002176)	ENSSHAG00000004075	ENSSHAG00000027862	ENSSHAG00000026426
Eutheria	ANCESTRAL SPECIES	27	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Glires	ANCESTRAL SPECIES	21	ENSGT00940000155012.f.a	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Rodentia_B	ANCESTRAL SPECIES	28	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00950000183069.b.b.a.b
Myomorpha	ANCESTRAL SPECIES	27	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00950000183069.b.b.a.b.c.a.b.b
Muroidea	ANCESTRAL SPECIES	70	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.d	ENSGT00940000162906.c.b.c	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00950000183069.b.b.a.a.f
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.c	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00950000183069.b.b.a.a.f
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000161836	ENSGT00940000155012.f.a.a.d	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00940000162734	ENSGT00940000162586	ENSGT00400000022306	ENSGT00950000183078.b.b	ENSGT00390000016767	ENSGT00390000004796	ENSGT00940000161539	ENSGT00390000010194	ENSGT01020000230351.A	ENSGT00390000012041	ENSGT00940000160709	ENSGT00940000156599	ENSGT00390000016776	ENSGT00550000075141	ENSGT00940000154764
Golden Hamster	MODERN SPECIES	804	Fcer2a (ENSMAUG00000015342)	Clec4g (ENSMAUG00000002022)	Cd209a (ENSMAUG00000016298)	Cd209e (ENSMAUG00000011892)	Cd209b (ENSMAUG00000015887)	Cd209c (ENSMAUG00000013062)	Evi5l (ENSMAUG00000014934)	Prr36 (ENSMAUG00000001714)	Lrrc8e (ENSMAUG00000016048)	Map2k7 (ENSMAUG00000003663)	Snapc2 (ENSMAUG00000015015)	Ctxn1 (ENSMAUG00000000773)	Timm44 (ENSMAUG00000019937)	Elavl1 (ENSMAUG00000000924)	ENSMAUG00000012972	Cers4 (ENSMAUG00000020952) ##22	ENSMAUG00000013889	ENSMAUG00000019276	ENSMAUG00000003676	Chfr (ENSMAUG00000018146)	Golga3 (ENSMAUG00000017308)	Ankle2 (ENSMAUG00000020311)	Pgam5 (ENSMAUG00000008878)	Pxmp2 (ENSMAUG00000012927)	ENSMAUG00000020143	ENSMAUG00000018639	ENSMAUG00000000910	P2rx2 (ENSMAUG00000011915)	Lrcol1 (ENSMAUG00000021578)	Fbrsl1 (ENSMAUG00000020661)	Galnt9 (ENSMAUG00000015583)
Chinese hamster chok1gshd	MODERN SPECIES	130	Cd209d (ENSCGRG00001012454)	Cd209b (ENSCGRG00001018164)	Cd209c (ENSCGRG00001013767)	ENSCGRG00001012657	Cd209f (ENSCGRG00001013648)	Cd209g (ENSCGRG00001023340)	Evi5l (ENSCGRG00001024938)	Prr36 (ENSCGRG00001010019)	Lrrc8e (ENSCGRG00001024603)	Map2k7 (ENSCGRG00001018547)	Snapc2 (ENSCGRG00001006223)	Ctxn1 (ENSCGRG00001000838)	Timm44 (ENSCGRG00001023723)	Elavl1 (ENSCGRG00001013676)	ENSCGRG00001022971	ENSCGRG00001017924 ##22	ENSCGRG00001000880	ENSCGRG00001023214	ENSCGRG00001013619	Zfp605 (ENSCGRG00001025071)	Chfr (ENSCGRG00001021486)	Golga3 (ENSCGRG00001024610)	Ankle2 (ENSCGRG00001015292)	Pgam5 (ENSCGRG00001023531)	Pxmp2 (ENSCGRG00001020745)	Pole (ENSCGRG00001009740)	P2rx2 (ENSCGRG00001020311)	Lrcol1 (ENSCGRG00001024930)	Fbrsl1 (ENSCGRG00001017064)	Galnt9 (ENSCGRG00001017127)	Noc4l (ENSCGRG00001004291)
Cricetidae_B	ANCESTRAL SPECIES	49	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.c	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00950000183069.b.b.a.a.f
Prairie vole	MODERN SPECIES	98	Cd209a (ENSMOCG00000013815)	Cd209e (ENSMOCG00000011986)	Cd209b (ENSMOCG00000014532)	Cd209c (ENSMOCG00000021128)	Cd209g (ENSMOCG00000022897)	Evi5l (ENSMOCG00000009326)	ENSMOCG00000006668	Lrrc8e (ENSMOCG00000017877)	ENSMOCG00000011434	Tgfbr3l (ENSMOCG00000016850)	Snapc2 (ENSMOCG00000019080)	Ctxn1 (ENSMOCG00000002103)	Timm44 (ENSMOCG00000010356)	Elavl1 (ENSMOCG00000014588)	ENSMOCG00000012263	Cers4 (ENSMOCG00000000689) ##22
Northern American deer mouse	MODERN SPECIES	15	Cd209f (ENSPEMG00000011771)	Cd209g (ENSPEMG00000014567)	Evi5l (ENSPEMG00000023714)	Prr36 (ENSPEMG00000021651)	Lrrc8e (ENSPEMG00000023328)	Map2k7 (ENSPEMG00000021355)	Tgfbr3l (ENSPEMG00000021626)	Snapc2 (ENSPEMG00000009767)	Ctxn1 (ENSPEMG00000027712)	Timm44 (ENSPEMG00000023598)	Elavl1 (ENSPEMG00000025293)	ENSPEMG00000010434	ENSPEMG00000022546	ENSPEMG00000030491	ENSPEMG00000026677	Cers4 (ENSPEMG00000021295) ##22	ENSPEMG00000025357	ENSPEMG00000027722	ENSPEMG00000022587	ENSPEMG00000028296	ENSPEMG00000027927	ENSPEMG00000015454	Cdk8 (ENSPEMG00000012706)	Wasf3 (ENSPEMG00000011510)	ENSPEMG00000030961	Gpr12 (ENSPEMG00000010665)	Usp12 (ENSPEMG00000008193)	Rpl21 (ENSPEMG00000006041)	Rasl11a (ENSPEMG00000004475)	Gtf3a (ENSPEMG00000003201)	Mtif3 (ENSPEMG00000000930)
Murinae	ANCESTRAL SPECIES	28	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.d	ENSGT00940000162906.c.b.c	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00950000183069.b.b.a.a.f
Mus	ANCESTRAL SPECIES	6	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.d	ENSGT00940000162906.c.b.c	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00940000161310	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000155868	ENSGT00730000111249	ENSGT00940000155696	ENSGT00860000133881	ENSGT00940000158114	ENSGT01030000238791	ENSGT00940000157536.b	ENSGT00940000158920	ENSGT00940000161407	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024	ENSGT00390000000917
Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.d	ENSGT00940000162906.c.b.c.a.a	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00940000161310	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000155868	ENSGT00900000143557	ENSGT00730000111249	ENSGT00940000155696	ENSGT00860000133881	ENSGT00940000158114	ENSGT01030000238791	ENSGT00940000157536.b	ENSGT00940000158920	ENSGT00940000161407	ENSGT00940000157678	ENSGT00940000157234	ENSGT00940000161024
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.d	ENSGT00940000162906.c.b.c.a.a	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00940000153805.q.b.a.a.b.a.a	ENSGT00940000161310	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000155868	ENSGT00900000143557	ENSGT00730000111249	ENSGT00940000155696	ENSGT00860000133881	ENSGT00940000158114	ENSGT01030000238791	ENSGT00940000157536.b	ENSGT00940000158920	ENSGT00940000161407	ENSGT00940000157678	ENSGT00940000157234
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.b.d	ENSGT00940000155012.f.a.b.c	ENSGT00940000155012.e	ENSGT00940000162906.c.b.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT01030000234515.a.b.b ##22	ENSGT00940000153805.q.b.a.a.b.a.a	ENSGT00940000161310	ENSGT00950000182808.a.a.a.a.a	ENSGT00940000155868	ENSGT00900000143557	ENSGT00730000111249	ENSGT00940000155696	ENSGT00860000133881	ENSGT00940000158114	ENSGT01030000238791	ENSGT00940000157536.b	ENSGT00940000158920	ENSGT00940000161407	ENSGT00940000157678	ENSGT00940000157234
Steppe mouse	MODERN SPECIES	2421				Cd209g (ENSMSIG00000031055)	ENSMSIG00000031053	ENSMSIG00000031050	Evi5l (ENSMSIG00000031036)	Lrrc8e (ENSMSIG00000031033)	Map2k7 (ENSMSIG00000031016)	Tgfbr3l (ENSMSIG00000031012)	Snapc2 (ENSMSIG00000031008)	Ctxn1 (ENSMSIG00000031007)	Timm44 (ENSMSIG00000030996)	Elavl1 (ENSMSIG00000030993)	Ccl25 (ENSMSIG00000030978)	Cers4 (ENSMSIG00000030972) ##22
spretus	MODERN SPECIES	17	Cd209e (MGP_SPRETEiJ_G0031893)	Cd209d (MGP_SPRETEiJ_G0031894)	Cd209b (MGP_SPRETEiJ_G0031895)	Cd209c (MGP_SPRETEiJ_G0031896)	MGP_SPRETEiJ_G0031897	Evi5l (MGP_SPRETEiJ_G0031898)	Prr36 (MGP_SPRETEiJ_G0031899)	Lrrc8e (MGP_SPRETEiJ_G0031900)	Map2k7 (MGP_SPRETEiJ_G0031901)	Tgfbr3l (MGP_SPRETEiJ_G0031902)	Snapc2 (MGP_SPRETEiJ_G0031903)	Ctxn1 (MGP_SPRETEiJ_G0031904)	Timm44 (MGP_SPRETEiJ_G0031905)	Elavl1 (MGP_SPRETEiJ_G0031906)	Ccl25 (MGP_SPRETEiJ_G0031907)	Cers4 (MGP_SPRETEiJ_G0031908) ##22	Zfp958 (MGP_SPRETEiJ_G0031909)	MGP_SPRETEiJ_G0031910	Shcbp1 (MGP_SPRETEiJ_G0031911)	Slc10a2 (MGP_SPRETEiJ_G0031912)	Efnb2 (MGP_SPRETEiJ_G0031913)	MGP_SPRETEiJ_G0031914	Arglu1 (MGP_SPRETEiJ_G0031915)	Nalf1 (MGP_SPRETEiJ_G0031916)	Lig4 (MGP_SPRETEiJ_G0031917)	Abhd13 (MGP_SPRETEiJ_G0031918)	Tnfsf13b (MGP_SPRETEiJ_G0031919)	Myo16 (MGP_SPRETEiJ_G0031920)	Irs2 (MGP_SPRETEiJ_G0031921)	Col4a1 (MGP_SPRETEiJ_G0031922)	MGP_SPRETEiJ_G0031923
Mouse	MODERN SPECIES	17	Cd209d (ENSMUSG00000031495)	Cd209b (ENSMUSG00000065987)	Cd209c (ENSMUSG00000040165)	Cd209f (ENSMUSG00000051906)	Cd209g (ENSMUSG00000079168)	Evi5l (ENSMUSG00000011832)	Prr36 (ENSMUSG00000064125)	Lrrc8e (ENSMUSG00000046589)	Map2k7 (ENSMUSG00000002948)	Tgfbr3l (ENSMUSG00000089736)	Snapc2 (ENSMUSG00000011837)	Ctxn1 (ENSMUSG00000048644)	Timm44 (ENSMUSG00000002949)	Elavl1 (ENSMUSG00000040028)	Ccl25 (ENSMUSG00000023235)	Cers4 (ENSMUSG00000008206) ##22	Zfp958 (ENSMUSG00000058748)	Shcbp1 (ENSMUSG00000022322)	Slc10a2 (ENSMUSG00000023073)	Efnb2 (ENSMUSG00000001300)	Arglu1 (ENSMUSG00000040459)	Nalf1 (ENSMUSG00000079157)	Lig4 (ENSMUSG00000049717)	Abhd13 (ENSMUSG00000040396)	Tnfsf13b (ENSMUSG00000031497)	Myo16 (ENSMUSG00000039057)	Irs2 (ENSMUSG00000038894)	Col4a1 (ENSMUSG00000031502)	Col4a2 (ENSMUSG00000031503)	Rab20 (ENSMUSG00000031504)	Naxd (ENSMUSG00000031505)
Ryukyu mouse	MODERN SPECIES	17	Cd209a (MGP_CAROLIEiJ_G0030784)	Cd209d (MGP_CAROLIEiJ_G0030785)	Cd209b (MGP_CAROLIEiJ_G0030786)	MGP_CAROLIEiJ_G0030788	Cd209g (MGP_CAROLIEiJ_G0030789)	Evi5l (MGP_CAROLIEiJ_G0030790)	MGP_CAROLIEiJ_G0030791	Lrrc8e (MGP_CAROLIEiJ_G0030792)	Map2k7 (MGP_CAROLIEiJ_G0030793)	Tgfbr3l (MGP_CAROLIEiJ_G0030794)	Snapc2 (MGP_CAROLIEiJ_G0030795)	Ctxn1 (MGP_CAROLIEiJ_G0030796)	Timm44 (MGP_CAROLIEiJ_G0030797)	Elavl1 (MGP_CAROLIEiJ_G0030798)	MGP_CAROLIEiJ_G0030799	Cers4 (MGP_CAROLIEiJ_G0030800) ##22	MGP_CAROLIEiJ_G0030801	Shcbp1 (MGP_CAROLIEiJ_G0030802)	MGP_CAROLIEiJ_G0030803	Slc10a2 (MGP_CAROLIEiJ_G0030804)	Efnb2 (MGP_CAROLIEiJ_G0030805)	MGP_CAROLIEiJ_G0030806	Arglu1 (MGP_CAROLIEiJ_G0030807)	Nalf1 (MGP_CAROLIEiJ_G0030808)	Lig4 (MGP_CAROLIEiJ_G0030809)	Abhd13 (MGP_CAROLIEiJ_G0030810)	Tnfsf13b (MGP_CAROLIEiJ_G0030811)	Myo16 (MGP_CAROLIEiJ_G0030812)	Irs2 (MGP_CAROLIEiJ_G0030813)	Col4a1 (MGP_CAROLIEiJ_G0030814)	Col4a2 (MGP_CAROLIEiJ_G0030815)
Shrew mouse	MODERN SPECIES	10	Stxbp2 (MGP_PahariEiJ_G0021248)	MGP_PahariEiJ_G0021249	MGP_PahariEiJ_G0021250	Cd209a (MGP_PahariEiJ_G0021251)	Cd209b (MGP_PahariEiJ_G0021252)	Cd209c (MGP_PahariEiJ_G0021253)	Evi5l (MGP_PahariEiJ_G0021254)	Prr36 (MGP_PahariEiJ_G0021255)	Lrrc8e (MGP_PahariEiJ_G0021256)	Map2k7 (MGP_PahariEiJ_G0021257)	Tgfbr3l (MGP_PahariEiJ_G0021258)	Ctxn1 (MGP_PahariEiJ_G0021259)	Timm44 (MGP_PahariEiJ_G0021260)	Elavl1 (MGP_PahariEiJ_G0021261)	MGP_PahariEiJ_G0021262	Cers4 (MGP_PahariEiJ_G0021263) ##22	Shcbp1 (MGP_PahariEiJ_G0021264)	Slc10a2 (MGP_PahariEiJ_G0021265)	Efnb2 (MGP_PahariEiJ_G0021266)	MGP_PahariEiJ_G0021267	Arglu1 (MGP_PahariEiJ_G0021268)	Nalf1 (MGP_PahariEiJ_G0021269)	Lig4 (MGP_PahariEiJ_G0021270)	Abhd13 (MGP_PahariEiJ_G0021271)	Tnfsf13b (MGP_PahariEiJ_G0021272)	Myo16 (MGP_PahariEiJ_G0021273)	Irs2 (MGP_PahariEiJ_G0021274)	Col4a1 (MGP_PahariEiJ_G0021275)	Col4a2 (MGP_PahariEiJ_G0021276)	Rab20 (MGP_PahariEiJ_G0021277)	Naxd (MGP_PahariEiJ_G0021278)
Rat	MODERN SPECIES	3	Uba3-ps2 (ENSRNOG00000054096)	RGD1564571 (ENSRNOG00000066613)	LOC100363064 (ENSRNOG00000001027)	Cd209f (ENSRNOG00000042317)	Evi5l (ENSRNOG00000001034)	Prr36 (ENSRNOG00000028892)	Lrrc8e (ENSRNOG00000028460)	Map2k7 (ENSRNOG00000001047)	Tgfbr3l (ENSRNOG00000050573)	Snapc2 (ENSRNOG00000001056)	Timm44 (ENSRNOG00000001058)	Elavl1 (ENSRNOG00000001069)	Ccl25 (ENSRNOG00000028531)	Higd2al1 (ENSRNOG00000001071)	Dppa1-ps1 (ENSRNOG00000028544)	Cers4 (ENSRNOG00000001072) ##22	Vom2r59 (ENSRNOG00000066069)	Pabpc4-ps1 (ENSRNOG00000028592)	Vom2r58 (ENSRNOG00000068363)	LOC120093129 (ENSRNOG00000070024)	ENSRNOG00000069956	LOC120095871 (ENSRNOG00000068541)	Zfp958 (ENSRNOG00000065430)	ENSRNOG00000065050	ENSRNOG00000070313	ENSRNOG00000062582	ENSRNOG00000070934	ENSRNOG00000069126	ENSRNOG00000070778	ENSRNOG00000063908	ENSRNOG00000069155
Upper Galilee mountains blind mole rat	MODERN SPECIES	1853			Cd209b (ENSNGAG00000014247)	ENSNGAG00000000873	Evi5l (ENSNGAG00000001370)	ENSNGAG00000014387	ENSNGAG00000014818	Lrrc8e (ENSNGAG00000016380)	Map2k7 (ENSNGAG00000018589)	Tgfbr3l (ENSNGAG00000011834)	Snapc2 (ENSNGAG00000014201)	Ctxn1 (ENSNGAG00000017104)	Timm44 (ENSNGAG00000017422)	Elavl1 (ENSNGAG00000019590)	ENSNGAG00000019571	Cers4 (ENSNGAG00000020478) ##22	Or1m1 (ENSNGAG00000014725)	ENSNGAG00000008092	Zfp558 (ENSNGAG00000017237)
Lesser Egyptian jerboa	MODERN SPECIES	226	ENSJJAG00000019453	ENSJJAG00000000156	Lrrc8e (ENSJJAG00000000184)	Map2k7 (ENSJJAG00000000574)	Snapc2 (ENSJJAG00000003060)	Ctxn1 (ENSJJAG00000012016)	Timm44 (ENSJJAG00000007309)	ENSJJAG00000011760	Elavl1 (ENSJJAG00000015838)	ENSJJAG00000011781	ENSJJAG00000016084	ENSJJAG00000016200	ENSJJAG00000016328	ENSJJAG00000011784	ENSJJAG00000011823	Cers4 (ENSJJAG00000016556) ##22	ENSJJAG00000016741	ENSJJAG00000016853	Cd320 (ENSJJAG00000016969)	ENSJJAG00000017167	ENSJJAG00000017384	ENSJJAG00000017674	Angptl4 (ENSJJAG00000018006)	ENSJJAG00000018891	Marchf2 (ENSJJAG00000019165)	Hnrnpm (ENSJJAG00000017319)	Pram1 (ENSJJAG00000001822)	Zfp414 (ENSJJAG00000005188)	Myo1f (ENSJJAG00000006946)	Adamts10 (ENSJJAG00000010365)
Kangaroo rat	MODERN SPECIES	489	Clec4g (ENSDORG00000023511)	ENSDORG00000027866	Cd209e (ENSDORG00000012009)	ENSDORG00000028409	Cd209c (ENSDORG00000029898)	Evi5l (ENSDORG00000013884)	Prr36 (ENSDORG00000013885)	Lrrc8e (ENSDORG00000024582)	Map2k7 (ENSDORG00000009150)	Tgfbr3l (ENSDORG00000030191)	Snapc2 (ENSDORG00000009155)	Ctxn1 (ENSDORG00000009156)	Timm44 (ENSDORG00000009157)	Elavl1 (ENSDORG00000009158)	ENSDORG00000026099	Cers4 (ENSDORG00000012322) ##22	Cd320 (ENSDORG00000012323)	Ndufa7 (ENSDORG00000012324)	Rps28 (ENSDORG00000027636)	ENSDORG00000027684	Angptl4 (ENSDORG00000007178)	Rab11b (ENSDORG00000006304)	Marchf2 (ENSDORG00000008103)	Hnrnpm (ENSDORG00000008105)	Zfp414 (ENSDORG00000008110)	Myo1f (ENSDORG00000024667)	Adamts10 (ENSDORG00000000568)	ENSDORG00000005491	ENSDORG00000025750	ENSDORG00000027752	ENSDORG00000025711
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000155012.f.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n.u	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Naked mole-rat female	MODERN SPECIES	21	FCER2 (ENSHGLG00000017734)	CLEC4G (ENSHGLG00000049245)	ENSHGLG00000017766	EVI5L (ENSHGLG00000006112)	PRR36 (ENSHGLG00000005714)	LRRC8E (ENSHGLG00000005847)	ENSHGLG00000050671	MAP2K7 (ENSHGLG00000009771)	TGFBR3L (ENSHGLG00000010450)	SNAPC2 (ENSHGLG00000040527)	CTXN1 (ENSHGLG00000042384)	TIMM44 (ENSHGLG00000018326)	ELAVL1 (ENSHGLG00000016101)	ENSHGLG00000016245	FBN3 (ENSHGLG00000039625)	CERS4 (ENSHGLG00000015118) ##22	ENSHGLG00000013199	RPS28 (ENSHGLG00000032809)	ENSHGLG00000015324	KANK3 (ENSHGLG00000034766)	ANGPTL4 (ENSHGLG00000014763)	ENSHGLG00000014984	MARCH2 (ENSHGLG00000006489)	ENSHGLG00000009796	ENSHGLG00000032626	ZNF414 (ENSHGLG00000010578)	MYO1F (ENSHGLG00000009662)	ADAMTS10 (ENSHGLG00000012867)	ENSHGLG00000038649	ENSHGLG00000043531	ENSHGLG00000044244
Hystricomorpha_a	ANCESTRAL SPECIES	69	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n.u	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b
Hystricomorpha_b	ANCESTRAL SPECIES	93	ENSGT00940000155012.f.b	ENSGT00940000155012.f.a.a.b	ENSGT00940000155012.e	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.A	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n.u	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a
Long-tailed chinchilla	MODERN SPECIES	270	ENSCLAG00000002265	ENSCLAG00000002179	ENSCLAG00000002053	ENSCLAG00000001953	ENSCLAG00000003602	EVI5L (ENSCLAG00000002315)	PRR36 (ENSCLAG00000003789)	LRRC8E (ENSCLAG00000003511)	MAP2K7 (ENSCLAG00000002675)	CTXN1 (ENSCLAG00000007134)	SNAPC2 (ENSCLAG00000006885)	TIMM44 (ENSCLAG00000008481)	ELAVL1 (ENSCLAG00000007826)	ENSCLAG00000007462	ENSCLAG00000002590	CERS4 (ENSCLAG00000002452) ##22	CD320 (ENSCLAG00000002375)	NDUFA7 (ENSCLAG00000002328)	RPS28 (ENSCLAG00000002218)	ENSCLAG00000002193	ANGPTL4 (ENSCLAG00000003396)	RAB11B (ENSCLAG00000003207)	MARCHF2 (ENSCLAG00000002760)	ENSCLAG00000011194	PRAM1 (ENSCLAG00000010229)	ZNF414 (ENSCLAG00000002700)	MYO1F (ENSCLAG00000002581)	ADAMTS10 (ENSCLAG00000002185)	OR2Z1 (ENSCLAG00000017458)	ENSCLAG00000004913	ZNF558 (ENSCLAG00000003907)
Degu	MODERN SPECIES	255	ENSODEG00000010680	ENSODEG00000012346	ENSODEG00000011218	ENSODEG00000012311	ENSODEG00000011113	ENSODEG00000010671	EVI5L (ENSODEG00000012663)	ENSODEG00000010815	LRRC8E (ENSODEG00000011497)	MAP2K7 (ENSODEG00000012972)	TGFBR3L (ENSODEG00000011690)	SNAPC2 (ENSODEG00000011415)	CTXN1 (ENSODEG00000019975)	TIMM44 (ENSODEG00000011966)	ELAVL1 (ENSODEG00000012189)	CERS4 (ENSODEG00000012322) ##22	CD320 (ENSODEG00000011308)	NDUFA7 (ENSODEG00000011906)	RPS28 (ENSODEG00000012169)	ENSODEG00000013962	ANGPTL4 (ENSODEG00000011879)	RAB11B (ENSODEG00000011371)	ENSODEG00000019849	ENSODEG00000010763	ENSODEG00000010314	ZNF414 (ENSODEG00000010741)	ENSODEG00000019782	MYO1F (ENSODEG00000010712)	ADAMTS10 (ENSODEG00000010286)	OR2Z1 (ENSODEG00000019889)	ENSODEG00000019765
Guinea pig	MODERN SPECIES	192					EVI5L (ENSCPOG00000009818)	ENSCPOG00000031478	LRRC8E (ENSCPOG00000003902)	MAP2K7 (ENSCPOG00000023036)	TGFBR3L (ENSCPOG00000039466)	SNAPC2 (ENSCPOG00000034229)	CTXN1 (ENSCPOG00000036871)	TIMM44 (ENSCPOG00000001987)	ELAVL1 (ENSCPOG00000011884)	ENSCPOG00000007131	ENSCPOG00000021546	CERS4 (ENSCPOG00000025376) ##22	ENSCPOG00000021105	CD320 (ENSCPOG00000031573)	NDUFA7 (ENSCPOG00000002035)	RPS28 (ENSCPOG00000022876)	ENSCPOG00000037757	ANGPTL4 (ENSCPOG00000008042)	RAB11B (ENSCPOG00000030154)	MARCHF2 (ENSCPOG00000015180)	HNRNPM (ENSCPOG00000015182)	PRAM1 (ENSCPOG00000031370)	ENSCPOG00000027253	MYO1F (ENSCPOG00000007831)	ADAMTS10 (ENSCPOG00000024367)	ACTL9 (ENSCPOG00000023954)	ENSCPOG00000001389
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000155012.f.a.a	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e.a	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528.g	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000155012.f.a.a	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e.a	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528.g	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183069.b.b.b.c
Alpin marmot	MODERN SPECIES	88	ENSMMMG00000021176	ENSMMMG00000021180	ENSMMMG00000021194	ENSMMMG00000021198	ENSMMMG00000021207	EVI5L (ENSMMMG00000021217)	LRRC8E (ENSMMMG00000021332)	MAP2K7 (ENSMMMG00000021333)	TGFBR3L (ENSMMMG00000021457)	SNAPC2 (ENSMMMG00000021464)	CTXN1 (ENSMMMG00000021465)	TIMM44 (ENSMMMG00000021466)	ELAVL1 (ENSMMMG00000021475)	ENSMMMG00000021486	ENSMMMG00000021496	CERS4 (ENSMMMG00000021500) ##22	CD320 (ENSMMMG00000021502)	NDUFA7 (ENSMMMG00000021517)	RPS28 (ENSMMMG00000021523)	ENSMMMG00000021529	ENSMMMG00000021532	ANGPTL4 (ENSMMMG00000021540)	RAB11B (ENSMMMG00000021547)	MARCHF2 (ENSMMMG00000021551)	HNRNPM (ENSMMMG00000021559)	PRAM1 (ENSMMMG00000021639)	ZNF414 (ENSMMMG00000021643)	MYO1F (ENSMMMG00000021651)	ADAMTS10 (ENSMMMG00000021664)	ENSMMMG00000021732	OR2Z1 (ENSMMMG00000021735)
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000155012.f.a.a	ENSGT00940000155012.f.a.b	ENSGT00940000155012.e.a	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528.g	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.k	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183069.b.b.b.c
Arctic ground squirrel	MODERN SPECIES	507					ENSUPAG00010003719	EVI5L (ENSUPAG00010003728)	LRRC8E (ENSUPAG00010003817)	MAP2K7 (ENSUPAG00010003826)	TGFBR3L (ENSUPAG00010004107)	SNAPC2 (ENSUPAG00010004119)	CTXN1 (ENSUPAG00010004123)	TIMM44 (ENSUPAG00010004130)	ELAVL1 (ENSUPAG00010004154)	ENSUPAG00010004163	FBN3 (ENSUPAG00010004184)	CERS4 (ENSUPAG00010004265) ##22	CD320 (ENSUPAG00010004295)	NDUFA7 (ENSUPAG00010004300)	RPS28 (ENSUPAG00010004310)	KANK3 (ENSUPAG00010004316)	ANGPTL4 (ENSUPAG00010004365)	RAB11B (ENSUPAG00010004384)	MARCHF2 (ENSUPAG00010004403)	HNRNPM (ENSUPAG00010004424)	PRAM1 (ENSUPAG00010004811)	ZNF414 (ENSUPAG00010004817)	MYO1F (ENSUPAG00010004834)	ADAMTS10 (ENSUPAG00010004866)	ACTL9 (ENSUPAG00010004897)	OR2Z1 (ENSUPAG00010004902)	ENSUPAG00010004916
Squirrel	MODERN SPECIES	188	ENSSTOG00000028847	ENSSTOG00000022637	ENSSTOG00000029769	ENSSTOG00000020523	ENSSTOG00000021108	EVI5L (ENSSTOG00000008992)	ENSSTOG00000028455	LRRC8E (ENSSTOG00000028937)	MAP2K7 (ENSSTOG00000009084)	TGFBR3L (ENSSTOG00000031738)	SNAPC2 (ENSSTOG00000009102)	CTXN1 (ENSSTOG00000030571)	TIMM44 (ENSSTOG00000019444)	ELAVL1 (ENSSTOG00000009130)	FBN3 (ENSSTOG00000003543)	CERS4 (ENSSTOG00000021515) ##22	CD320 (ENSSTOG00000008071)	NDUFA7 (ENSSTOG00000022681)	RPS28 (ENSSTOG00000022842)	KANK3 (ENSSTOG00000029027)	ANGPTL4 (ENSSTOG00000008075)	RAB11B (ENSSTOG00000031571)	MARCHF2 (ENSSTOG00000008089)	HNRNPM (ENSSTOG00000008112)	PRAM1 (ENSSTOG00000028598)	ZNF414 (ENSSTOG00000028879)	MYO1F (ENSSTOG00000008262)	ADAMTS10 (ENSSTOG00000026527)	ACTL9 (ENSSTOG00000010273)	OR2Z1 (ENSSTOG00000002427)	ZNF558 (ENSSTOG00000002432)
Eurasian red squirrel	MODERN SPECIES	7	FCER2 (ENSSVLG00005025781)	CLEC4G (ENSSVLG00005025786)	ENSSVLG00005025789	ENSSVLG00005025790	ENSSVLG00005016832	ENSSVLG00005016924	ENSSVLG00005016996	EVI5L (ENSSVLG00005017039)	LRRC8E (ENSSVLG00005017143)	MAP2K7 (ENSSVLG00005017196)	SNAPC2 (ENSSVLG00005017416)	CTXN1 (ENSSVLG00005017460)	TIMM44 (ENSSVLG00005017481)	ENSSVLG00005017547	ENSSVLG00005017716	CERS4 (ENSSVLG00005018470) ##22	CD320 (ENSSVLG00005018510)	NDUFA7 (ENSSVLG00005018613)	ENSSVLG00005018644	KANK3 (ENSSVLG00005018691)	ANGPTL4 (ENSSVLG00005018874)	RAB11B (ENSSVLG00005018946)	MARCHF2 (ENSSVLG00005019007)	ENSSVLG00005019076	PRAM1 (ENSSVLG00005019162)	ZNF414 (ENSSVLG00005019297)	MYO1F (ENSSVLG00005019668)	NFILZ (ENSSVLG00005020290)	ACTL9 (ENSSVLG00005020308)	ENSSVLG00005020329	OR2Z1 (ENSSVLG00005020355)
Lagomorpha	ANCESTRAL SPECIES	85	ENSGT00390000016177.e	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.f.a	ENSGT00940000159311.c	ENSGT00940000153846.a.b	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h.j.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Rabbit	MODERN SPECIES	500	RETN (ENSOCUG00000025105)	ENSOCUG00000000877	TRAPPC5 (ENSOCUG00000000878)	FCER2 (ENSOCUG00000024433)	ENSOCUG00000016293	ENSOCUG00000010890	LRRC8E (ENSOCUG00000029461)	EVI5L (ENSOCUG00000010898)	MAP2K7 (ENSOCUG00000024299)	TGFBR3L (ENSOCUG00000039514)	SNAPC2 (ENSOCUG00000027536)	TIMM44 (ENSOCUG00000023159)	ELAVL1 (ENSOCUG00000015871)	ENSOCUG00000025780	FBN3 (ENSOCUG00000011511)	CERS4 (ENSOCUG00000005369) ##22	CD320 (ENSOCUG00000025026)	NDUFA7 (ENSOCUG00000009522)	RPS28 (ENSOCUG00000021484)	KANK3 (ENSOCUG00000009525)	ANGPTL4 (ENSOCUG00000016603)	RAB11B (ENSOCUG00000028208)	MARCHF2 (ENSOCUG00000008321)	ENSOCUG00000000552	PRAM1 (ENSOCUG00000000555)	ZNF414 (ENSOCUG00000027412)	MYO1F (ENSOCUG00000000558)	ADAMTS10 (ENSOCUG00000026658)	ENSOCUG00000032497	ACTL9 (ENSOCUG00000029481)	OR2Z1 (ENSOCUG00000011183)
Primates	ANCESTRAL SPECIES	18	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000167383	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00910000148866	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b
Hominidae	ANCESTRAL SPECIES		ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000167383	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000167383	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000156197.s.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000167383	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000156197.s.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Pan	ANCESTRAL SPECIES	14	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000167383	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000156197.s.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000160844.a
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000045685	CD209 (ENSPTRG00000010403)	CLEC4M (ENSPTRG00000010404)	EVI5L (ENSPTRG00000010405)	PRR36 (ENSPTRG00000010406)	ENSPTRG00000043410	LRRC8E (ENSPTRG00000010408)	MAP2K7 (ENSPTRG00000010409)	TGFBR3L (ENSPTRG00000044481)	SNAPC2 (ENSPTRG00000042034)	CTXN1 (ENSPTRG00000051848)	TIMM44 (ENSPTRG00000010412)	ELAVL1 (ENSPTRG00000010413)	CCL25 (ENSPTRG00000010414)	FBN3 (ENSPTRG00000010415)	CERS4 (ENSPTRG00000010416) ##22	CD320 (ENSPTRG00000010417)	NDUFA7 (ENSPTRG00000010418)	RPS28 (ENSPTRG00000040141)	KANK3 (ENSPTRG00000010419)	ANGPTL4 (ENSPTRG00000010420)	RAB11B (ENSPTRG00000010422)	MARCHF2 (ENSPTRG00000010423)	HNRNPM (ENSPTRG00000010424)	PRAM1 (ENSPTRG00000010425)	ZNF414 (ENSPTRG00000010427)	MYO1F (ENSPTRG00000010428)	ADAMTS10 (ENSPTRG00000010429)	ACTL9 (ENSPTRG00000029143)	OR2Z1 (ENSPTRG00000010430)	ZNF558 (ENSPTRG00000050215)
Bonobo	MODERN SPECIES	10	ENSPPAG00000039972	ENSPPAG00000044101	ENSPPAG00000043675	EVI5L (ENSPPAG00000035922)	ENSPPAG00000039947	ENSPPAG00000026915	LRRC8E (ENSPPAG00000036697)	MAP2K7 (ENSPPAG00000039095)	TGFBR3L (ENSPPAG00000029580)	SNAPC2 (ENSPPAG00000032460)	CTXN1 (ENSPPAG00000010442)	TIMM44 (ENSPPAG00000043896)	ELAVL1 (ENSPPAG00000035262)	CCL25 (ENSPPAG00000031289)	FBN3 (ENSPPAG00000031224)	CERS4 (ENSPPAG00000041286) ##22	CD320 (ENSPPAG00000031620)	NDUFA7 (ENSPPAG00000043893)	RPS28 (ENSPPAG00000028825)	ENSPPAG00000033255	ANGPTL4 (ENSPPAG00000034759)	ENSPPAG00000028589	MARCHF2 (ENSPPAG00000000150)	HNRNPM (ENSPPAG00000039365)	ENSPPAG00000040760	MYO1F (ENSPPAG00000031899)	ADAMTS10 (ENSPPAG00000040699)	ACTL9 (ENSPPAG00000014650)	OR2Z1 (ENSPPAG00000018967)	ZNF558 (ENSPPAG00000035925)	MBD3L1 (ENSPPAG00000016338)
Human	MODERN SPECIES	10	FCER2 (ENSG00000104921)	CLEC4G (ENSG00000182566)	CD209 (ENSG00000090659)	CLEC4M (ENSG00000104938)	EVI5L (ENSG00000142459)	PRR36 (ENSG00000183248)	LRRC8E (ENSG00000171017)	MAP2K7 (ENSG00000076984)	TGFBR3L (ENSG00000260001)	SNAPC2 (ENSG00000104976)	CTXN1 (ENSG00000178531)	TIMM44 (ENSG00000104980)	ELAVL1 (ENSG00000066044)	CCL25 (ENSG00000131142)	FBN3 (ENSG00000142449)	CERS4 (ENSG00000090661) ##22	CD320 (ENSG00000167775)	NDUFA7 (ENSG00000267855)	RPS28 (ENSG00000233927)	KANK3 (ENSG00000186994)	ANGPTL4 (ENSG00000167772)	RAB11B (ENSG00000185236)	MARCHF2 (ENSG00000099785)	HNRNPM (ENSG00000099783)	PRAM1 (ENSG00000133246)	ZNF414 (ENSG00000133250)	MYO1F (ENSG00000142347)	ADAMTS10 (ENSG00000142303)	NFILZ (ENSG00000268480)	ACTL9 (ENSG00000181786)	OR2Z1 (ENSG00000181733)
Gorilla	MODERN SPECIES	10	FCER2 (ENSGGOG00000006991)	ENSGGOG00000006537	ENSGGOG00000005655	ENSGGOG00000025707	CLEC4M (ENSGGOG00000015715)	EVI5L (ENSGGOG00000001967)	PRR36 (ENSGGOG00000001971)	LRRC8E (ENSGGOG00000024318)	MAP2K7 (ENSGGOG00000012376)	TGFBR3L (ENSGGOG00000039729)	SNAPC2 (ENSGGOG00000022392)	TIMM44 (ENSGGOG00000005220)	ELAVL1 (ENSGGOG00000006100)	CCL25 (ENSGGOG00000005280)	FBN3 (ENSGGOG00000004780)	CERS4 (ENSGGOG00000011145) ##22	CD320 (ENSGGOG00000000923)	NDUFA7 (ENSGGOG00000000924)	RPS28 (ENSGGOG00000024725)	KANK3 (ENSGGOG00000000926)	ANGPTL4 (ENSGGOG00000014506)	ENSGGOG00000014516	MARCHF2 (ENSGGOG00000025279)	HNRNPM (ENSGGOG00000003498)	PRAM1 (ENSGGOG00000003508)	ZNF414 (ENSGGOG00000003514)	MYO1F (ENSGGOG00000027383)	ADAMTS10 (ENSGGOG00000009626)	ACTL9 (ENSGGOG00000014253)	ENSGGOG00000036817	ZNF558 (ENSGGOG00000043471)
Orangutan	MODERN SPECIES	10	TRAPPC5 (ENSPPYG00000009483)	FCER2 (ENSPPYG00000009484)	CLEC4G (ENSPPYG00000009485)	ENSPPYG00000009486	CD209 (ENSPPYG00000040087)	ENSPPYG00000009487	EVI5L (ENSPPYG00000009489)	LRRC8E (ENSPPYG00000009491)	ENSPPYG00000009493	SNAPC2 (ENSPPYG00000009494)	CTXN1 (ENSPPYG00000030057)	TIMM44 (ENSPPYG00000009495)	ELAVL1 (ENSPPYG00000009496)	CCL25 (ENSPPYG00000009497)	FBN3 (ENSPPYG00000009498)	CERS4 (ENSPPYG00000009499) ##22	ENSPPYG00000009500	ENSPPYG00000009501	ENSPPYG00000037647	KANK3 (ENSPPYG00000009502)	ANGPTL4 (ENSPPYG00000009503)	RAB11B (ENSPPYG00000009504)	MARCHF2 (ENSPPYG00000009505)	HNRNPM (ENSPPYG00000009506)	ZNF414 (ENSPPYG00000009508)	MYO1F (ENSPPYG00000009509)	ADAMTS10 (ENSPPYG00000009510)	NFILZ (ENSPPYG00000037268)	ACTL9 (ENSPPYG00000009511)	ZNF558 (ENSPPYG00000039432)	MBD3L1 (ENSPPYG00000009514)
Gibbon	MODERN SPECIES		ENSNLEG00000001157	ENSNLEG00000001167	CD209 (ENSNLEG00000001171)	CLEC4M (ENSNLEG00000001186)	ENSNLEG00000001208	ENSNLEG00000001219	ENSNLEG00000031179	ENSNLEG00000034660	MAP2K7 (ENSNLEG00000001225)	TGFBR3L (ENSNLEG00000001246)	SNAPC2 (ENSNLEG00000001250)	TIMM44 (ENSNLEG00000001311)	ELAVL1 (ENSNLEG00000001325)	ENSNLEG00000001348	FBN3 (ENSNLEG00000001354)	CERS4 (ENSNLEG00000001421) ##22	CD320 (ENSNLEG00000001512)	ENSNLEG00000001564	ENSNLEG00000036113	KANK3 (ENSNLEG00000001567)	ANGPTL4 (ENSNLEG00000001646)	RAB11B (ENSNLEG00000001733)	ENSNLEG00000035171	ENSNLEG00000001884	ENSNLEG00000001892	ZNF414 (ENSNLEG00000001897)	MYO1F (ENSNLEG00000001899)	ADAMTS10 (ENSNLEG00000001981)	ACTL9 (ENSNLEG00000019136)	ZNF558 (ENSNLEG00000036293)	ENSNLEG00000011958
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Macaca	ANCESTRAL SPECIES	24	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.a
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000030984	MCEMP1 (ENSMNEG00000018128)	FCER2 (ENSMNEG00000035318)	CLEC4G (ENSMNEG00000032330)	ENSMNEG00000006635	CD209 (ENSMNEG00000033113)	EVI5L (ENSMNEG00000032835)	PRR36 (ENSMNEG00000045017)	LRRC8E (ENSMNEG00000030858)	SNAPC2 (ENSMNEG00000039547)	CTXN1 (ENSMNEG00000016133)	TIMM44 (ENSMNEG00000036302)	ELAVL1 (ENSMNEG00000028431)	CCL25 (ENSMNEG00000043477)	FBN3 (ENSMNEG00000042833)	CERS4 (ENSMNEG00000035560) ##22	CD320 (ENSMNEG00000029539)	NDUFA7 (ENSMNEG00000035512)	RPS28 (ENSMNEG00000036447)	KANK3 (ENSMNEG00000032044)	ANGPTL4 (ENSMNEG00000039040)	ENSMNEG00000039759	ENSMNEG00000035563	HNRNPM (ENSMNEG00000036546)	PRAM1 (ENSMNEG00000036192)	ZNF414 (ENSMNEG00000033701)	MYO1F (ENSMNEG00000039218)	ADAMTS10 (ENSMNEG00000040648)	ZNF558 (ENSMNEG00000035004)	ZNF317 (ENSMNEG00000026253)	OR7E24 (ENSMNEG00000041152)
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000164709.a.b.b.a.a.b.b.a.b.a.b.a	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.a
Crab-eating macaque	MODERN SPECIES	10	FCER2 (ENSMFAG00000046023)	CLEC4G (ENSMFAG00000036659)	CD209 (ENSMFAG00000046257)	ENSMFAG00000054103	ENSMFAG00000061221	EVI5L (ENSMFAG00000045931)	LRRC8E (ENSMFAG00000038156)	MAP2K7 (ENSMFAG00000031756)	ENSMFAG00000050179	SNAPC2 (ENSMFAG00000034273)	TIMM44 (ENSMFAG00000037515)	ENSMFAG00000064115	ELAVL1 (ENSMFAG00000040787)	CCL25 (ENSMFAG00000034081)	FBN3 (ENSMFAG00000035371)	CERS4 (ENSMFAG00000044404) ##22	ENSMFAG00000053865	CD320 (ENSMFAG00000013824)	RPS28 (ENSMFAG00000042430)	ANGPTL4 (ENSMFAG00000003517)	ENSMFAG00000063041	ENSMFAG00000003654	MARCHF2 (ENSMFAG00000064335)	HNRNPM (ENSMFAG00000037617)	ENSMFAG00000062631	MYO1F (ENSMFAG00000050770)	ADAMTS10 (ENSMFAG00000040772)	ENSMFAG00000056242	NFILZ (ENSMFAG00000065017)	ACTL9 (ENSMFAG00000051542)	ZNF558 (ENSMFAG00000036165)
Rhesus	MODERN SPECIES	10	TRAPPC5 (ENSMMUG00000040778)	FCER2 (ENSMMUG00000043304)	CLEC4G (ENSMMUG00000055035)	CD209 (ENSMMUG00000022463)	ENSMMUG00000022459	EVI5L (ENSMMUG00000023303)	PRR36 (ENSMMUG00000014032)	LRRC8E (ENSMMUG00000005424)	TGFBR3L (ENSMMUG00000042364)	SNAPC2 (ENSMMUG00000006540)	CTXN1 (ENSMMUG00000063148)	TIMM44 (ENSMMUG00000006542)	ELAVL1 (ENSMMUG00000006544)	CCL25 (ENSMMUG00000010614)	FBN3 (ENSMMUG00000061632)	CERS4 (ENSMMUG00000011178) ##22	ENSMMUG00000052371	CD320 (ENSMMUG00000016695)	RPS28 (ENSMMUG00000028895)	KANK3 (ENSMMUG00000016699)	ANGPTL4 (ENSMMUG00000000698)	ENSMMUG00000050846	RAB11B (ENSMMUG00000010225)	MARCHF2 (ENSMMUG00000043959)	HNRNPM (ENSMMUG00000018806)	PRAM1 (ENSMMUG00000018808)	ZNF414 (ENSMMUG00000019918)	MYO1F (ENSMMUG00000014247)	ADAMTS10 (ENSMMUG00000016821)	NFILZ (ENSMMUG00000064610)	ACTL9 (ENSMMUG00000000818)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.a
Olive baboon	MODERN SPECIES	12	RETN (ENSPANG00000003097)	MCEMP1 (ENSPANG00000047630)	TRAPPC5 (ENSPANG00000038853)	FCER2 (ENSPANG00000034142)	CLEC4G (ENSPANG00000023737)	CD209 (ENSPANG00000038812)	EVI5L (ENSPANG00000006328)	LRRC8E (ENSPANG00000013864)	MAP2K7 (ENSPANG00000025885)	TGFBR3L (ENSPANG00000025884)	SNAPC2 (ENSPANG00000025882)	CTXN1 (ENSPANG00000014766)	TIMM44 (ENSPANG00000025880)	ELAVL1 (ENSPANG00000025878)	CCL25 (ENSPANG00000047735)	CERS4 (ENSPANG00000025898) ##22	CD320 (ENSPANG00000025896)	NDUFA7 (ENSPANG00000034306)	RPS28 (ENSPANG00000037243)	KANK3 (ENSPANG00000019662)	ANGPTL4 (ENSPANG00000024228)	RAB11B (ENSPANG00000007765)	MARCHF2 (ENSPANG00000003167)	HNRNPM (ENSPANG00000000283)	ZNF414 (ENSPANG00000000284)	MYO1F (ENSPANG00000023736)	ADAMTS10 (ENSPANG00000011403)	NFILZ (ENSPANG00000043417)	ACTL9 (ENSPANG00000049301)	ZNF558 (ENSPANG00000051164)	MBD3L1 (ENSPANG00000042687)
Cercopithecinae_d	ANCESTRAL SPECIES	145	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22
Sooty mangabey	MODERN SPECIES	142	FCER2 (ENSCATG00000030023)	CLEC4G (ENSCATG00000042048)	ENSCATG00000023735	CD209 (ENSCATG00000039635)	EVI5L (ENSCATG00000030291)	PRR36 (ENSCATG00000012311)	LRRC8E (ENSCATG00000040633)	MAP2K7 (ENSCATG00000011863)	TGFBR3L (ENSCATG00000010487)	SNAPC2 (ENSCATG00000037131)	CTXN1 (ENSCATG00000021193)	TIMM44 (ENSCATG00000042671)	ELAVL1 (ENSCATG00000032090)	CCL25 (ENSCATG00000039011)	FBN3 (ENSCATG00000018606)	CERS4 (ENSCATG00000040233) ##22
Drill	MODERN SPECIES	889																ENSMLEG00000027692 ##22
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00390000016177.e	ENSGT00390000007959	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00940000162241
Golden snub-nosed monkey	MODERN SPECIES	2705																ENSRROG00000040503 ##22	CD320 (ENSRROG00000038178)	NDUFA7 (ENSRROG00000041841)	KANK3 (ENSRROG00000042744)	RPS28 (ENSRROG00000009415)	ANGPTL4 (ENSRROG00000029593)	ENSRROG00000037812	MARCHF2 (ENSRROG00000045422)	ENSRROG00000038240	PRAM1 (ENSRROG00000034408)	ZNF414 (ENSRROG00000039297)	MYO1F (ENSRROG00000040817)	ADAMTS10 (ENSRROG00000041926)	ZNF558 (ENSRROG00000036466)	ZNF317 (ENSRROG00000045625)	OR7E24 (ENSRROG00000042290)
Black snub-nosed monkey	MODERN SPECIES	631	RETN (ENSRBIG00000010665)	MCEMP1 (ENSRBIG00000033977)	FCER2 (ENSRBIG00000016194)	ENSRBIG00000012863	CLEC4G (ENSRBIG00000030982)	CD209 (ENSRBIG00000032271)	EVI5L (ENSRBIG00000036815)	PRR36 (ENSRBIG00000041595)	LRRC8E (ENSRBIG00000040670)	MAP2K7 (ENSRBIG00000041907)	TGFBR3L (ENSRBIG00000039173)	SNAPC2 (ENSRBIG00000044314)	TIMM44 (ENSRBIG00000038040)	ENSRBIG00000032339	FBN3 (ENSRBIG00000036086)	CERS4 (ENSRBIG00000027720) ##22	CD320 (ENSRBIG00000001373)	NDUFA7 (ENSRBIG00000041772)	RPS28 (ENSRBIG00000042335)	KANK3 (ENSRBIG00000036072)	ANGPTL4 (ENSRBIG00000041585)	ENSRBIG00000013864	MARCHF2 (ENSRBIG00000038979)	HNRNPM (ENSRBIG00000041503)	PRAM1 (ENSRBIG00000034004)	ZNF414 (ENSRBIG00000038458)	MYO1F (ENSRBIG00000031467)	ADAMTS10 (ENSRBIG00000039319)	ZNF558 (ENSRBIG00000039683)	ZNF317 (ENSRBIG00000027750)	ENSRBIG00000023121
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00940000163044
Cebidae	ANCESTRAL SPECIES	20	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00940000163044
Marmoset	MODERN SPECIES	14	TRAPPC5 (ENSCJAG00000087099)	FCER2 (ENSCJAG00000008723)	CLEC4G (ENSCJAG00000015545)	ENSCJAG00000015556	CD209 (ENSCJAG00000006032)	EVI5L (ENSCJAG00000006059)	LRRC8E (ENSCJAG00000006077)	MAP2K7 (ENSCJAG00000082705)	TGFBR3L (ENSCJAG00000046411)	SNAPC2 (ENSCJAG00000006117)	CTXN1 (ENSCJAG00000046027)	TIMM44 (ENSCJAG00000006140)	ELAVL1 (ENSCJAG00000046587)	CCL25 (ENSCJAG00000006163)	FBN3 (ENSCJAG00000006168)	CERS4 (ENSCJAG00000010661) ##22	ENSCJAG00000038461	CD320 (ENSCJAG00000010700)	RPS28 (ENSCJAG00000010726)	KANK3 (ENSCJAG00000010732)	ENSCJAG00000077168	ANGPTL4 (ENSCJAG00000010768)	RAB11B (ENSCJAG00000010778)	MARCHF2 (ENSCJAG00000010794)	HNRNPM (ENSCJAG00000010802)	PRAM1 (ENSCJAG00000010913)	ZNF414 (ENSCJAG00000010927)	MYO1F (ENSCJAG00000038608)	ADAMTS10 (ENSCJAG00000010967)	ENSCJAG00000079050	ENSCJAG00000084738
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012.a	ENSGT00940000155012.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00940000162241	ENSGT00940000163210
Capuchin	MODERN SPECIES	263	FCER2 (ENSCCAG00000021488)	CLEC4G (ENSCCAG00000022021)	ENSCCAG00000020177	CD209 (ENSCCAG00000019752)	EVI5L (ENSCCAG00000036414)	PRR36 (ENSCCAG00000032270)	LRRC8E (ENSCCAG00000030598)	MAP2K7 (ENSCCAG00000026261)	TGFBR3L (ENSCCAG00000024020)	SNAPC2 (ENSCCAG00000034172)	CTXN1 (ENSCCAG00000020174)	TIMM44 (ENSCCAG00000031644)	ELAVL1 (ENSCCAG00000025328)	CCL25 (ENSCCAG00000025560)	FBN3 (ENSCCAG00000033590)	CERS4 (ENSCCAG00000034625) ##22	CD320 (ENSCCAG00000033119)	NDUFA7 (ENSCCAG00000022136)	RPS28 (ENSCCAG00000030298)	KANK3 (ENSCCAG00000021820)	ANGPTL4 (ENSCCAG00000025028)	RAB11B (ENSCCAG00000031042)	MARCHF2 (ENSCCAG00000024442)	HNRNPM (ENSCCAG00000018782)	PRAM1 (ENSCCAG00000028323)	ZNF414 (ENSCCAG00000025848)	MYO1F (ENSCCAG00000035877)	ADAMTS10 (ENSCCAG00000028986)	ZNF558 (ENSCCAG00000012617)	ENSCCAG00000024658	ZNF317 (ENSCCAG00000018106)
Bolivian squirrel monkey	MODERN SPECIES	150	MCEMP1 (ENSSBOG00000035055)	FCER2 (ENSSBOG00000022822)	CLEC4G (ENSSBOG00000033975)	ENSSBOG00000033786	CLEC4M (ENSSBOG00000032670)	EVI5L (ENSSBOG00000028287)	PRR36 (ENSSBOG00000025280)	LRRC8E (ENSSBOG00000027556)	MAP2K7 (ENSSBOG00000033007)	TGFBR3L (ENSSBOG00000034139)	SNAPC2 (ENSSBOG00000011587)	TIMM44 (ENSSBOG00000015126)	ELAVL1 (ENSSBOG00000028871)	CCL25 (ENSSBOG00000020279)	FBN3 (ENSSBOG00000027131)	CERS4 (ENSSBOG00000023727) ##22	CD320 (ENSSBOG00000035853)	NDUFA7 (ENSSBOG00000032110)	ENSSBOG00000012561	ENSSBOG00000036262	ANGPTL4 (ENSSBOG00000036274)	RAB11B (ENSSBOG00000035094)	MARCHF2 (ENSSBOG00000035515)	ENSSBOG00000033638	HNRNPM (ENSSBOG00000032416)	PRAM1 (ENSSBOG00000035353)	ZNF414 (ENSSBOG00000034279)	MYO1F (ENSSBOG00000013487)	ADAMTS10 (ENSSBOG00000033434)	ZNF558 (ENSSBOG00000026599)	ZNF317 (ENSSBOG00000018054)
Mas night monkey	MODERN SPECIES	937	MCEMP1 (ENSANAG00000023177)	FCER2 (ENSANAG00000032914)	CLEC4G (ENSANAG00000033934)	ENSANAG00000026389	EVI5L (ENSANAG00000028460)	PRR36 (ENSANAG00000033942)	LRRC8E (ENSANAG00000029805)	MAP2K7 (ENSANAG00000033002)	TGFBR3L (ENSANAG00000033435)	SNAPC2 (ENSANAG00000029939)	CTXN1 (ENSANAG00000016882)	TIMM44 (ENSANAG00000032251)	ENSANAG00000037170	CCL25 (ENSANAG00000034778)	FBN3 (ENSANAG00000036627)	CERS4 (ENSANAG00000035562) ##22	CD320 (ENSANAG00000035570)	ENSANAG00000021631	ENSANAG00000036427	KANK3 (ENSANAG00000036657)	ANGPTL4 (ENSANAG00000033820)	RAB11B (ENSANAG00000037616)	MARCHF2 (ENSANAG00000019800)	HNRNPM (ENSANAG00000025358)	PRAM1 (ENSANAG00000036679)	ZNF414 (ENSANAG00000037244)	MYO1F (ENSANAG00000017950)	ADAMTS10 (ENSANAG00000026146)	ZNF558 (ENSANAG00000007813)	ZNF317 (ENSANAG00000023090)	ENSANAG00000018556
Tarsier	MODERN SPECIES	6341																ENSTSYG00000036116 ##22
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00400000024336	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00390000007959	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Mouse lemur	MODERN SPECIES	16	MCEMP1 (ENSMICG00000037055)	FCER2 (ENSMICG00000046082)	CLEC4G (ENSMICG00000007511)	ENSMICG00000027611	EVI5L (ENSMICG00000009812)	PRR36 (ENSMICG00000033523)	LRRC8E (ENSMICG00000009651)	MAP2K7 (ENSMICG00000009656)	TGFBR3L (ENSMICG00000036269)	SNAPC2 (ENSMICG00000035695)	CTXN1 (ENSMICG00000043197)	TIMM44 (ENSMICG00000009680)	ELAVL1 (ENSMICG00000009699)	ENSMICG00000041953	ENSMICG00000032746	CERS4 (ENSMICG00000014575) ##22	CD320 (ENSMICG00000046176)	NDUFA7 (ENSMICG00000002422)	RPS28 (ENSMICG00000026849)	KANK3 (ENSMICG00000029751)	ANGPTL4 (ENSMICG00000002426)	ENSMICG00000034065	MARCHF2 (ENSMICG00000002527)	HNRNPM (ENSMICG00000002532)	PRAM1 (ENSMICG00000038402)	ZNF414 (ENSMICG00000006194)	MYO1F (ENSMICG00000006198)	ENSMICG00000006214	ZNF653 (ENSMICG00000034400)	ENSMICG00000045642	HOMER3 (ENSMICG00000038004)
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00390000007959	ENSGT00940000162574	ENSGT00940000161836	ENSGT00960000189690	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595.n	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Greater bamboo lemur	MODERN SPECIES	1027					ENSPSMG00000016413	EVI5L (ENSPSMG00000016492)	PRR36 (ENSPSMG00000016521)	LRRC8E (ENSPSMG00000016530)	MAP2K7 (ENSPSMG00000016564)	SNAPC2 (ENSPSMG00000016573)	CTXN1 (ENSPSMG00000016575)	TIMM44 (ENSPSMG00000016631)	ELAVL1 (ENSPSMG00000016697)	ENSPSMG00000016715	FBN3 (ENSPSMG00000016737)	CERS4 (ENSPSMG00000016761) ##22
Coquerels sifaka	MODERN SPECIES	226	FCER2 (ENSPCOG00000019619)	CLEC4G (ENSPCOG00000019386)	ENSPCOG00000016548	ENSPCOG00000020388	EVI5L (ENSPCOG00000019613)	PRR36 (ENSPCOG00000023012)	LRRC8E (ENSPCOG00000013872)	MAP2K7 (ENSPCOG00000008757)	TGFBR3L (ENSPCOG00000022751)	SNAPC2 (ENSPCOG00000026672)	CTXN1 (ENSPCOG00000007786)	TIMM44 (ENSPCOG00000021628)	ELAVL1 (ENSPCOG00000003300)	ENSPCOG00000019012	FBN3 (ENSPCOG00000019134)	CERS4 (ENSPCOG00000018408) ##22	CD320 (ENSPCOG00000021639)	NDUFA7 (ENSPCOG00000022876)	RPS28 (ENSPCOG00000018363)	KANK3 (ENSPCOG00000025645)	ANGPTL4 (ENSPCOG00000016753)	RAB11B (ENSPCOG00000028053)	MARCHF2 (ENSPCOG00000018109)	HNRNPM (ENSPCOG00000020227)	PRAM1 (ENSPCOG00000024323)	ZNF414 (ENSPCOG00000026830)	MYO1F (ENSPCOG00000015956)	ADAMTS10 (ENSPCOG00000026576)	ZNF558 (ENSPCOG00000023649)
Bushbaby	MODERN SPECIES	186						EVI5L (ENSOGAG00000012843)	ENSOGAG00000033034	LRRC8E (ENSOGAG00000012849)	ENSOGAG00000012864	MAP2K7 (ENSOGAG00000012868)	SNAPC2 (ENSOGAG00000012870)	CTXN1 (ENSOGAG00000027018)	TIMM44 (ENSOGAG00000012874)	ELAVL1 (ENSOGAG00000012877)	FBN3 (ENSOGAG00000012883)	CERS4 (ENSOGAG00000001041) ##22	CD320 (ENSOGAG00000006707)	NDUFA7 (ENSOGAG00000001043)	KANK3 (ENSOGAG00000028936)	ANGPTL4 (ENSOGAG00000003225)	RAB11B (ENSOGAG00000003227)	MARCHF2 (ENSOGAG00000003231)	ENSOGAG00000030987	PRAM1 (ENSOGAG00000024559)	ZNF414 (ENSOGAG00000003243)	MYO1F (ENSOGAG00000033035)	ADAMTS10 (ENSOGAG00000006542)	ACTL9 (ENSOGAG00000034725)	ENSOGAG00000032835	OR2Z1 (ENSOGAG00000030672)	ZNF558 (ENSOGAG00000008204)
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.t	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Artiodactyla	ANCESTRAL SPECIES	23	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b
Suina	ANCESTRAL SPECIES	16	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Chacoan peccary	MODERN SPECIES	770	ENSCWAG00000014568	TRAPPC5 (ENSCWAG00000014607)	CLEC4G (ENSCWAG00000014865)	ENSCWAG00000014957	EVI5L (ENSCWAG00000015041)	LRRC8E (ENSCWAG00000015188)	MAP2K7 (ENSCWAG00000015216)	TGFBR3L (ENSCWAG00000015286)	SNAPC2 (ENSCWAG00000015331)	CTXN1 (ENSCWAG00000015364)	TIMM44 (ENSCWAG00000015383)	ELAVL1 (ENSCWAG00000015443)	CCL25 (ENSCWAG00000015510)	FBN3 (ENSCWAG00000015622)	ENSCWAG00000016379	CERS4 (ENSCWAG00000016403) ##22	CD320 (ENSCWAG00000016478)	NDUFA7 (ENSCWAG00000016503)	RPS28 (ENSCWAG00000016528)	KANK3 (ENSCWAG00000016576)	ANGPTL4 (ENSCWAG00000016767)	RAB11B (ENSCWAG00000016886)	MARCHF2 (ENSCWAG00000016943)	HNRNPM (ENSCWAG00000017001)	ZNF414 (ENSCWAG00000017051)	MYO1F (ENSCWAG00000017093)	ADAMTS10 (ENSCWAG00000017445)	ZNF558 (ENSCWAG00000017577)	ENSCWAG00000017601	ACTL9 (ENSCWAG00000017641)	ENSCWAG00000017657
Pig	MODERN SPECIES	10	CLEC4G (ENSSSCG00000039007)	CD209 (ENSSSCG00000013579)	ENSSSCG00000046934	EVI5L (ENSSSCG00000013585)	ENSSSCG00000013584	LRRC8E (ENSSSCG00000013586)	MAP2K7 (ENSSSCG00000013588)	TGFBR3L (ENSSSCG00000040598)	SNAPC2 (ENSSSCG00000013589)	CTXN1 (ENSSSCG00000036220)	TIMM44 (ENSSSCG00000013591)	ELAVL1 (ENSSSCG00000013592)	CCL25 (ENSSSCG00000013593)	FBN3 (ENSSSCG00000013594)	ENSSSCG00000063352	CERS4 (ENSSSCG00000013595) ##22	CD320 (ENSSSCG00000032833)	NDUFA7 (ENSSSCG00000041220)	RPS28 (ENSSSCG00000013597)	KANK3 (ENSSSCG00000013598)	ANGPTL4 (ENSSSCG00000013599)	RAB11B (ENSSSCG00000013600)	MARCHF2 (ENSSSCG00000013601)	HNRNPM (ENSSSCG00000013602)	PRAM1 (ENSSSCG00000060035)	ZNF414 (ENSSSCG00000024810)	MYO1F (ENSSSCG00000013604)	ADAMTS10 (ENSSSCG00000026994)	NFILZ (ENSSSCG00000055667)	ACTL9 (ENSSSCG00000013605)	OR2Z1 (ENSSSCG00000013606)
Artiodactyla_a	ANCESTRAL SPECIES	24	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b
Camelidae	ANCESTRAL SPECIES	61	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00390000016735
Arabian camel	MODERN SPECIES	14	ENSCDRG00005014547	ENSCDRG00005014486	CLEC4G (ENSCDRG00005014424)	ENSCDRG00005014380	EVI5L (ENSCDRG00005014180)	PRR36 (ENSCDRG00005014132)	LRRC8E (ENSCDRG00005014110)	MAP2K7 (ENSCDRG00005013675)	TGFBR3L (ENSCDRG00005013598)	SNAPC2 (ENSCDRG00005013517)	CTXN1 (ENSCDRG00005013495)	TIMM44 (ENSCDRG00005013430)	ELAVL1 (ENSCDRG00005013355)	CCL25 (ENSCDRG00005013296)	FBN3 (ENSCDRG00005011636)	CERS4 (ENSCDRG00005011543) ##22	ENSCDRG00005011484	CD320 (ENSCDRG00005011455)	NDUFA7 (ENSCDRG00005011397)	RPS28 (ENSCDRG00005011369)	KANK3 (ENSCDRG00005011269)	ANGPTL4 (ENSCDRG00005011142)	RAB11B (ENSCDRG00005011000)	MARCHF2 (ENSCDRG00005010915)	HNRNPM (ENSCDRG00005010751)	PRAM1 (ENSCDRG00005010701)	ZNF414 (ENSCDRG00005010644)	MYO1F (ENSCDRG00005008914)	ADAMTS10 (ENSCDRG00005014083)	ACTL9 (ENSCDRG00005014023)	OR2Z1 (ENSCDRG00005013991)
Artiodactyla_b	ANCESTRAL SPECIES	25	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b
Cetacea	ANCESTRAL SPECIES	1	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT00390000007888.d.i.a	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00960000190059	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000000976	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT00390000007888.d.i.a	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00390000000976	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT00390000007888.d.i.a	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT00390000007888.d.i.a	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT00390000007888.d.i.a	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425
Narwhal	MODERN SPECIES	298	ENSMMNG00015018767	TRAPPC5 (ENSMMNG00015018788)	CLEC4G (ENSMMNG00015018814)	ENSMMNG00015018843	EVI5L (ENSMMNG00015018889)	LRRC8E (ENSMMNG00015018942)	MAP2K7 (ENSMMNG00015018984)	TGFBR3L (ENSMMNG00015019042)	SNAPC2 (ENSMMNG00015019070)	CTXN1 (ENSMMNG00015019111)	TIMM44 (ENSMMNG00015019128)	ELAVL1 (ENSMMNG00015019178)	CCL25 (ENSMMNG00015019210)	FBN3 (ENSMMNG00015019425)	ENSMMNG00015019781	CERS4 (ENSMMNG00015019809) ##22	CD320 (ENSMMNG00015019864)	NDUFA7 (ENSMMNG00015019887)	RPS28 (ENSMMNG00015019912)	KANK3 (ENSMMNG00015019936)	ANGPTL4 (ENSMMNG00015019994)	RAB11B (ENSMMNG00015020044)	MARCHF2 (ENSMMNG00015020080)	HNRNPM (ENSMMNG00015020142)	PRAM1 (ENSMMNG00015020241)	ZNF414 (ENSMMNG00015020270)	MYO1F (ENSMMNG00015020312)	ADAMTS10 (ENSMMNG00015020451)	ACTL9 (ENSMMNG00015020513)	ENSMMNG00015020529	ENSMMNG00015020570
Beluga whale	MODERN SPECIES	62	RETN (ENSDLEG00000016946)	MCEMP1 (ENSDLEG00000016940)	TRAPPC5 (ENSDLEG00000016930)	CLEC4G (ENSDLEG00000016910)	CD209 (ENSDLEG00000016903)	EVI5L (ENSDLEG00000016858)	LRRC8E (ENSDLEG00000016842)	MAP2K7 (ENSDLEG00000016809)	TGFBR3L (ENSDLEG00000016788)	SNAPC2 (ENSDLEG00000016775)	CTXN1 (ENSDLEG00000016768)	TIMM44 (ENSDLEG00000016738)	ELAVL1 (ENSDLEG00000016728)	CCL25 (ENSDLEG00000016722)	FBN3 (ENSDLEG00000014671)	CERS4 (ENSDLEG00000014299) ##22	ENSDLEG00000014271	NDUFA7 (ENSDLEG00000014266)	RPS28 (ENSDLEG00000014249)	KANK3 (ENSDLEG00000014113)	ANGPTL4 (ENSDLEG00000014044)	ENSDLEG00000013992	MARCH2 (ENSDLEG00000013953)	HNRNPM (ENSDLEG00000013836)	PRAM1 (ENSDLEG00000013796)	ZNF414 (ENSDLEG00000013766)	MYO1F (ENSDLEG00000012681)	ADAMTS10 (ENSDLEG00000012334)	ACTL9 (ENSDLEG00000012304)	ENSDLEG00000012289	ENSDLEG00000012286
Vaquita	MODERN SPECIES	14	PCP2 (ENSPSNG00000009463)	STXBP2 (ENSPSNG00000009550)	RETN (ENSPSNG00000009634)	ENSPSNG00000009724	TRAPPC5 (ENSPSNG00000009905)	CLEC4G (ENSPSNG00000009956)	EVI5L (ENSPSNG00000010109)	LRRC8E (ENSPSNG00000010205)	MAP2K7 (ENSPSNG00000010242)	TGFBR3L (ENSPSNG00000010343)	SNAPC2 (ENSPSNG00000010426)	TIMM44 (ENSPSNG00000010469)	ELAVL1 (ENSPSNG00000010542)	CCL25 (ENSPSNG00000010606)	FBN3 (ENSPSNG00000010787)	CERS4 (ENSPSNG00000012139) ##22	CD320 (ENSPSNG00000012230)	NDUFA7 (ENSPSNG00000012251)	RPS28 (ENSPSNG00000012286)	ANGPTL4 (ENSPSNG00000012876)	RAB11B (ENSPSNG00000013038)	MARCHF2 (ENSPSNG00000013117)	HNRNPM (ENSPSNG00000013194)	PRAM1 (ENSPSNG00000013286)	ZNF414 (ENSPSNG00000013396)	MYO1F (ENSPSNG00000013483)	ADAMTS10 (ENSPSNG00000014228)	NFILZ (ENSPSNG00000014433)	ACTL9 (ENSPSNG00000014452)	ENSPSNG00000014500	ENSPSNG00000014650
Dolphin	MODERN SPECIES	6696																CERS4 (ENSTTRG00000000585) ##22
Sperm whale	MODERN SPECIES	129															ENSPCTG00005013664	CERS4 (ENSPCTG00005013547) ##22	CD320 (ENSPCTG00005013509)	NDUFA7 (ENSPCTG00005013436)	RPS28 (ENSPCTG00005013385)	ENSPCTG00005013299
Blue whale	MODERN SPECIES	14	TRAPPC5 (ENSBMSG00010000411)	ENSBMSG00010000390	CLEC4G (ENSBMSG00010000361)	ENSBMSG00010000327	EVI5L (ENSBMSG00010000214)	LRRC8E (ENSBMSG00010000166)	MAP2K7 (ENSBMSG00010000122)	TGFBR3L (ENSBMSG00010000083)	SNAPC2 (ENSBMSG00010000068)	CTXN1 (ENSBMSG00010013911)	TIMM44 (ENSBMSG00010013825)	ELAVL1 (ENSBMSG00010013783)	CCL25 (ENSBMSG00010013764)	FBN3 (ENSBMSG00010013523)	ENSBMSG00010013439	CERS4 (ENSBMSG00010013405) ##22	CD320 (ENSBMSG00010013391)	NDUFA7 (ENSBMSG00010013384)	RPS28 (ENSBMSG00010013372)	ENSBMSG00010013362	KANK3 (ENSBMSG00010013350)	ANGPTL4 (ENSBMSG00010013227)	RAB11B (ENSBMSG00010013204)	MARCHF2 (ENSBMSG00010013179)	HNRNPM (ENSBMSG00010013163)	ZNF414 (ENSBMSG00010013078)	MYO1F (ENSBMSG00010012965)	ADAMTS10 (ENSBMSG00010012896)	ACTL9 (ENSBMSG00010012871)	ENSBMSG00010012848	ENSBMSG00010012830
Pecora	ANCESTRAL SPECIES		ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Percora_a	ANCESTRAL SPECIES		ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Bovidae	ANCESTRAL SPECIES		ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Caprinae	ANCESTRAL SPECIES	3	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051.e	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00940000154431.e.a.a.a.a.a.b
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020009725	ENSOARG00020009809	ENSOARG00020009851	ENSOARG00020009935	ENSOARG00020010029	EVI5L (ENSOARG00020010122)	LRRC8E (ENSOARG00020010408)	MAP2K7 (ENSOARG00020010429)	TGFBR3L (ENSOARG00020010674)	SNAPC2 (ENSOARG00020010765)	CTXN1 (ENSOARG00020010824)	TIMM44 (ENSOARG00020010857)	ELAVL1 (ENSOARG00020010922)	CCL25 (ENSOARG00020011002)	FBN3 (ENSOARG00020011123)	CERS4 (ENSOARG00020012847) ##22	ENSOARG00020012973	NDUFA7 (ENSOARG00020013027)	RPS28 (ENSOARG00020013105)	KANK3 (ENSOARG00020013158)	ANGPTL4 (ENSOARG00020013214)	RAB11B (ENSOARG00020013395)	ENSOARG00020013505	HNRNPM (ENSOARG00020013599)	ZNF414 (ENSOARG00020013759)	MYO1F (ENSOARG00020013845)	ADAMTS10 (ENSOARG00020014322)	ACTL9 (ENSOARG00020014551)	OR2Z1 (ENSOARG00020014568)	ENSOARG00020014583	ENSOARG00020014632
Goat	MODERN SPECIES	26	ENSCHIG00000020081	ENSCHIG00000025954	ENSCHIG00000023239	TRAPPC5 (ENSCHIG00000002183)	FCER2 (ENSCHIG00000014931)	CLEC4G (ENSCHIG00000025064)	ENSCHIG00000011063	EVI5L (ENSCHIG00000009385)	LRRC8E (ENSCHIG00000020260)	MAP2K7 (ENSCHIG00000021476)	CTXN1 (ENSCHIG00000008271)	ENSCHIG00000024164	ELAVL1 (ENSCHIG00000014334)	CCL25 (ENSCHIG00000026192)	FBN3 (ENSCHIG00000012166)	CERS4 (ENSCHIG00000006098) ##22	ENSCHIG00000021021	NDUFA7 (ENSCHIG00000009187)	RPS28 (ENSCHIG00000017787)	KANK3 (ENSCHIG00000012453)	ANGPTL4 (ENSCHIG00000023643)	ENSCHIG00000022426	ENSCHIG00000016628	HNRNPM (ENSCHIG00000026313)	PRAM1 (ENSCHIG00000006566)	ZNF414 (ENSCHIG00000003887)	MYO1F (ENSCHIG00000015009)	ADAMTS10 (ENSCHIG00000025021)	ACTL9 (ENSCHIG00000009183)	OR2Z1 (ENSCHIG00000009977)	ENSCHIG00000015823
Bovinae	ANCESTRAL SPECIES	2	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Bos	ANCESTRAL SPECIES	3	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000016177.e	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00910000144227.s.a.h	ENSGT00390000006553	ENSGT00910000144227.s.b	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Domestic yak	MODERN SPECIES	27	STXBP2 (ENSBGRG00000018414)	ENSBGRG00000018862	ENSBGRG00000018955	TRAPPC5 (ENSBGRG00000019065)	FCER2 (ENSBGRG00000019117)	CLEC4G (ENSBGRG00000019306)	ENSBGRG00000019544	EVI5L (ENSBGRG00000019640)	LRRC8E (ENSBGRG00000020268)	MAP2K7 (ENSBGRG00000020311)	SNAPC2 (ENSBGRG00000020523)	CTXN1 (ENSBGRG00000020556)	TIMM44 (ENSBGRG00000020570)	ELAVL1 (ENSBGRG00000020714)	ENSBGRG00000020776	CERS4 (ENSBGRG00000024900) ##22	ENSBGRG00000025012	NDUFA7 (ENSBGRG00000025025)	ENSBGRG00000025044	KANK3 (ENSBGRG00000025061)	ANGPTL4 (ENSBGRG00000025096)	ENSBGRG00000025122	MARCHF2 (ENSBGRG00000025151)	HNRNPM (ENSBGRG00000025188)	ZNF414 (ENSBGRG00000025292)	MYO1F (ENSBGRG00000025321)	ADAMTS10 (ENSBGRG00000025401)	ENSBGRG00000025413	ACTL9 (ENSBGRG00000025424)	OR2Z1 (ENSBGRG00000025427)	ENSBGRG00000025442
Wild yak	MODERN SPECIES	346													ELAVL1 (ENSBMUG00000025875)	ENSBMUG00000025871	FBN3 (ENSBMUG00000025855)	CERS4 (ENSBMUG00000025834) ##22	ENSBMUG00000025817	ENSBMUG00000025808	NDUFA7 (ENSBMUG00000025804)	KANK3 (ENSBMUG00000025802)	ANGPTL4 (ENSBMUG00000025787)	ENSBMUG00000025784	MARCHF2 (ENSBMUG00000025779)	HNRNPM (ENSBMUG00000025771)	PRAM1 (ENSBMUG00000025757)	ZNF414 (ENSBMUG00000025755)	MYO1F (ENSBMUG00000025738)	ADAMTS10 (ENSBMUG00000025711)	ACTL9 (ENSBMUG00000025640)	OR2Z1 (ENSBMUG00000025633)	ENSBMUG00000025627
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000016177.e	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Hybrid Bos Indicus	MODERN SPECIES	26	ENSBIXG00005009395	ENSBIXG00005009407	TRAPPC5 (ENSBIXG00005009421)	ENSBIXG00005009437	CLEC4G (ENSBIXG00005009451)	ENSBIXG00005009471	EVI5L (ENSBIXG00005009531)	PRR36 (ENSBIXG00005009562)	LRRC8E (ENSBIXG00005009576)	MAP2K7 (ENSBIXG00005009621)	SNAPC2 (ENSBIXG00005009650)	TIMM44 (ENSBIXG00005009674)	ELAVL1 (ENSBIXG00005009728)	ENSBIXG00005009754	FBN3 (ENSBIXG00005010056)	CERS4 (ENSBIXG00005007096) ##22	ENSBIXG00005005696	NDUFA7 (ENSBIXG00005010207)	RPS28 (ENSBIXG00005010232)	KANK3 (ENSBIXG00005000822)	ANGPTL4 (ENSBIXG00005010288)	ENSBIXG00005010314	MARCHF2 (ENSBIXG00005000850)	HNRNPM (ENSBIXG00005010359)	PRAM1 (ENSBIXG00005010383)	ZNF414 (ENSBIXG00005010399)	MYO1F (ENSBIXG00005000747)	ADAMTS10 (ENSBIXG00005000887)	NFILZ (ENSBIXG00005010493)	ACTL9 (ENSBIXG00005010501)	OR2Z1 (ENSBIXG00005000894)
Cow	MODERN SPECIES	26	RETN (ENSBTAG00000004716)	MCEMP1 (ENSBTAG00000004714)	TRAPPC5 (ENSBTAG00000004268)	FCER2 (ENSBTAG00000004270)	CLEC4G (ENSBTAG00000013429)	CD209 (ENSBTAG00000007312)	EVI5L (ENSBTAG00000004294)	PRR36 (ENSBTAG00000044018)	LRRC8E (ENSBTAG00000004300)	MAP2K7 (ENSBTAG00000010639)	SNAPC2 (ENSBTAG00000014926)	TIMM44 (ENSBTAG00000015567)	ELAVL1 (ENSBTAG00000000613)	CCL25 (ENSBTAG00000005581)	FBN3 (ENSBTAG00000000595)	CERS4 (ENSBTAG00000003434) ##22	CD320 (ENSBTAG00000004403)	NDUFA7 (ENSBTAG00000052280)	RPS28 (ENSBTAG00000002468)	KANK3 (ENSBTAG00000002469)	ANGPTL4 (ENSBTAG00000002473)	RAB11B (ENSBTAG00000002475)	MARCHF2 (ENSBTAG00000021036)	HNRNPM (ENSBTAG00000021039)	PRAM1 (ENSBTAG00000021041)	ZNF414 (ENSBTAG00000007660)	MYO1F (ENSBTAG00000007661)	ADAMTS10 (ENSBTAG00000014207)	ACTL9 (ENSBTAG00000011255)	OR2Z1 (ENSBTAG00000051841)	ENSBTAG00000054873
American bison	MODERN SPECIES	3349	STXBP2 (ENSBBBG00000018941)	RETN (ENSBBBG00000018950)	ENSBBBG00000018964	FCER2 (ENSBBBG00000004855)	CLEC4G (ENSBBBG00000019038)	ENSBBBG00000004868	EVI5L (ENSBBBG00000019083)	LRRC8E (ENSBBBG00000019097)	MAP2K7 (ENSBBBG00000019142)	SNAPC2 (ENSBBBG00000019170)	CTXN1 (ENSBBBG00000019174)	TIMM44 (ENSBBBG00000004941)	ELAVL1 (ENSBBBG00000019214)	CCL25 (ENSBBBG00000007318)	FBN3 (ENSBBBG00000008464)	CERS4 (ENSBBBG00000009183) ##22	ENSBBBG00000008608	NDUFA7 (ENSBBBG00000019425)	ENSBBBG00000019442	KANK3 (ENSBBBG00000019486)	ANGPTL4 (ENSBBBG00000005269)	ENSBBBG00000005273	MARCHF2 (ENSBBBG00000019538)	HNRNPM (ENSBBBG00000019587)	PRAM1 (ENSBBBG00000019627)	ZNF414 (ENSBBBG00000019648)	MYO1F (ENSBBBG00000005170)	ENSBBBG00000005155	ENSBBBG00000019753	ACTL9 (ENSBBBG00000019764)	OR2Z1 (ENSBBBG00000005355)
Siberian musk deer	MODERN SPECIES	99	TRAPPC5 (ENSMMSG00000002750)	ENSMMSG00000002759	CLEC4G (ENSMMSG00000002774)	ENSMMSG00000002797	EVI5L (ENSMMSG00000002831)	ENSMMSG00000002878	LRRC8E (ENSMMSG00000002889)	MAP2K7 (ENSMMSG00000002907)	TGFBR3L (ENSMMSG00000002965)	SNAPC2 (ENSMMSG00000002987)	CTXN1 (ENSMMSG00000002999)	TIMM44 (ENSMMSG00000003023)	ELAVL1 (ENSMMSG00000003085)	CCL25 (ENSMMSG00000003113)	FBN3 (ENSMMSG00000003200)	CERS4 (ENSMMSG00000003402) ##22	ENSMMSG00000003437	NDUFA7 (ENSMMSG00000003447)	RPS28 (ENSMMSG00000003457)	KANK3 (ENSMMSG00000003473)	ANGPTL4 (ENSMMSG00000003494)	RAB11B (ENSMMSG00000003516)	MARCHF2 (ENSMMSG00000003527)	ENSMMSG00000003560	ZNF414 (ENSMMSG00000003602)	MYO1F (ENSMMSG00000003634)	ADAMTS10 (ENSMMSG00000003662)	ACTL9 (ENSMMSG00000003682)	OR2Z1 (ENSMMSG00000003688)	ENSMMSG00000003695	ENSMMSG00000003703
Yarkand deer	MODERN SPECIES	32	FCER2 (ENSCHYG00000007716)	ENSCHYG00000007773	CLEC4G (ENSCHYG00000007784)	ENSCHYG00000007834	EVI5L (ENSCHYG00000007964)	PRR36 (ENSCHYG00000008468)	LRRC8E (ENSCHYG00000008493)	MAP2K7 (ENSCHYG00000008515)	TGFBR3L (ENSCHYG00000008745)	SNAPC2 (ENSCHYG00000008785)	CTXN1 (ENSCHYG00000008900)	TIMM44 (ENSCHYG00000008941)	ELAVL1 (ENSCHYG00000009131)	ENSCHYG00000009260	FBN3 (ENSCHYG00000009392)	CERS4 (ENSCHYG00000010722) ##22	ENSCHYG00000010861	NDUFA7 (ENSCHYG00000010918)	RPS28 (ENSCHYG00000010962)	KANK3 (ENSCHYG00000011010)	ANGPTL4 (ENSCHYG00000011094)	RAB11B (ENSCHYG00000011222)	MARCHF2 (ENSCHYG00000011284)	HNRNPM (ENSCHYG00000011387)	ENSCHYG00000011848	ZNF414 (ENSCHYG00000011878)	MYO1F (ENSCHYG00000012026)	ADAMTS10 (ENSCHYG00000012363)	NFILZ (ENSCHYG00000012650)	ACTL9 (ENSCHYG00000012673)	OR2Z1 (ENSCHYG00000012698)
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Canidae	ANCESTRAL SPECIES		ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000007959	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528.i	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Dog	MODERN SPECIES	12	ENSCAFG00845027907	TRAPPC5 (ENSCAFG00845028079)	FCER2 (ENSCAFG00845028136)	CLEC4G (ENSCAFG00845028231)	CD209 (ENSCAFG00845028310)	EVI5L (ENSCAFG00845028558)	ENSCAFG00845028652	LRRC8E (ENSCAFG00845028670)	MAP2K7 (ENSCAFG00845028690)	SNAPC2 (ENSCAFG00845028803)	CTXN1 (ENSCAFG00845028842)	TIMM44 (ENSCAFG00845028877)	ENSCAFG00845028908	CCL25 (ENSCAFG00845028954)	FBN3 (ENSCAFG00845029156)	CERS4 (ENSCAFG00845029643) ##22	ENSCAFG00845029681	ENSCAFG00845029699	NDUFA7 (ENSCAFG00845029721)	RPS28 (ENSCAFG00845005920)	KANK3 (ENSCAFG00845005960)	ANGPTL4 (ENSCAFG00845006010)	RAB11B (ENSCAFG00845006072)	MARCHF2 (ENSCAFG00845006157)	HNRNPM (ENSCAFG00845006315)	PRAM1 (ENSCAFG00845006650)	ZNF414 (ENSCAFG00845006747)	MYO1F (ENSCAFG00845006824)	ADAMTS10 (ENSCAFG00845006935)	NFILZ (ENSCAFG00845007057)	ACTL9 (ENSCAFG00845007084)
Dingo	MODERN SPECIES	112	ENSCAFG00020022879	TRAPPC5 (ENSCAFG00020022875)	ENSCAFG00020022871	CLEC4G (ENSCAFG00020022865)	ENSCAFG00020022863	EVI5L (ENSCAFG00020022858)	PRR36 (ENSCAFG00020022857)	LRRC8E (ENSCAFG00020022856)	MAP2K7 (ENSCAFG00020022853)	SNAPC2 (ENSCAFG00020022851)	CTXN1 (ENSCAFG00020022849)	TIMM44 (ENSCAFG00020022846)	ENSCAFG00020022841	ENSCAFG00020022839	FBN3 (ENSCAFG00020022324)	CERS4 (ENSCAFG00020022207) ##22	ENSCAFG00020022199	NDUFA7 (ENSCAFG00020022197)	KANK3 (ENSCAFG00020022189)	ANGPTL4 (ENSCAFG00020022186)	RAB11B (ENSCAFG00020022184)	MARCHF2 (ENSCAFG00020022180)	HNRNPM (ENSCAFG00020022128)	PRAM1 (ENSCAFG00020022122)	ZNF414 (ENSCAFG00020022119)	MYO1F (ENSCAFG00020021952)	ADAMTS10 (ENSCAFG00020021899)	ENSCAFG00020021888	ACTL9 (ENSCAFG00020021887)	OR2Z1 (ENSCAFG00020021885)	ENSCAFG00020021884
Red fox	MODERN SPECIES	212	ENSVVUG00000027080	ENSVVUG00000027079	CLEC4G (ENSVVUG00000027070)	ENSVVUG00000027068	ENSVVUG00000027066	EVI5L (ENSVVUG00000027064)	PRR36 (ENSVVUG00000027061)	LRRC8E (ENSVVUG00000027058)	MAP2K7 (ENSVVUG00000027000)	SNAPC2 (ENSVVUG00000026998)	CTXN1 (ENSVVUG00000026995)	TIMM44 (ENSVVUG00000026990)	ENSVVUG00000026988	ENSVVUG00000026986	FBN3 (ENSVVUG00000025403)	CERS4 (ENSVVUG00000025222) ##22	ENSVVUG00000025221	NDUFA7 (ENSVVUG00000025219)	RPS28 (ENSVVUG00000025217)	KANK3 (ENSVVUG00000025212)	ANGPTL4 (ENSVVUG00000025211)	RAB11B (ENSVVUG00000025210)	MARCH2 (ENSVVUG00000025209)	HNRNPM (ENSVVUG00000024984)	PRAM1 (ENSVVUG00000024967)	ZNF414 (ENSVVUG00000024965)	MYO1F (ENSVVUG00000024835)	ENSVVUG00000024831	ADAMTS10 (ENSVVUG00000024744)	ENSVVUG00000024730	ACTL9 (ENSVVUG00000024729)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Mustelinae	ANCESTRAL SPECIES	19	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b	ENSGT00940000162163
Ferret	MODERN SPECIES	326	ENSMPUG00000008197	TRAPPC5 (ENSMPUG00000008190)	FCER2 (ENSMPUG00000008140)	CLEC4G (ENSMPUG00000008133)	ENSMPUG00000008121	EVI5L (ENSMPUG00000008038)	ENSMPUG00000008026	LRRC8E (ENSMPUG00000008023)	MAP2K7 (ENSMPUG00000008015)	SNAPC2 (ENSMPUG00000008010)	CTXN1 (ENSMPUG00000019709)	TIMM44 (ENSMPUG00000007997)	ELAVL1 (ENSMPUG00000007991)	ENSMPUG00000007960	FBN3 (ENSMPUG00000007353)	CERS4 (ENSMPUG00000007336) ##22	CD320 (ENSMPUG00000007323)	NDUFA7 (ENSMPUG00000007302)	KANK3 (ENSMPUG00000007284)	ANGPTL4 (ENSMPUG00000007272)	RAB11B (ENSMPUG00000007263)	MARCHF2 (ENSMPUG00000007257)	ENSMPUG00000019708	HNRNPM (ENSMPUG00000007241)	ZNF414 (ENSMPUG00000007231)	MYO1F (ENSMPUG00000007207)	ADAMTS10 (ENSMPUG00000007181)	ENSMPUG00000007174	ACTL9 (ENSMPUG00000007168)	OR2Z1 (ENSMPUG00000019707)	ENSMPUG00000007161
American mink	MODERN SPECIES	175	STXBP2 (ENSNVIG00000018114)	ENSNVIG00000018107	CLEC4G (ENSNVIG00000018070)	ENSNVIG00000018065	EVI5L (ENSNVIG00000017850)	ENSNVIG00000017824	LRRC8E (ENSNVIG00000017818)	MAP2K7 (ENSNVIG00000017772)	TGFBR3L (ENSNVIG00000017754)	SNAPC2 (ENSNVIG00000017737)	CTXN1 (ENSNVIG00000017726)	TIMM44 (ENSNVIG00000017687)	ELAVL1 (ENSNVIG00000017648)	ENSNVIG00000017604	FBN3 (ENSNVIG00000017398)	CERS4 (ENSNVIG00000017330) ##22	ENSNVIG00000017324	CD320 (ENSNVIG00000017319)	NDUFA7 (ENSNVIG00000017312)	RPS28 (ENSNVIG00000017303)	KANK3 (ENSNVIG00000017288)	ANGPTL4 (ENSNVIG00000017269)	RAB11B (ENSNVIG00000017229)	MARH2 (ENSNVIG00000017185)	HNRNPM (ENSNVIG00000017104)	ZNF414 (ENSNVIG00000017053)	MYO1F (ENSNVIG00000016901)	ADAMTS10 (ENSNVIG00000016863)	ENSNVIG00000016819	ENSNVIG00000016802	ENSNVIG00000016792
Ursidae	ANCESTRAL SPECIES	20	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870.n	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
Ursus	ANCESTRAL SPECIES	16	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00950000186147	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870.n	ENSGT00940000158404	ENSGT00940000163012	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b
American black bear	MODERN SPECIES	231																CERS4 (ENSUAMG00000022326) ##22	CD320 (ENSUAMG00000022327)	NDUFA7 (ENSUAMG00000022328)	RPS28 (ENSUAMG00000022329)	KANK3 (ENSUAMG00000022330)
Polar bear	MODERN SPECIES	455	PCP2 (ENSUMAG00000015354)	STXBP2 (ENSUMAG00000015010)	ENSUMAG00000014974	ENSUMAG00000014969	TRAPPC5 (ENSUMAG00000014962)	FCER2 (ENSUMAG00000014881)	CLEC4G (ENSUMAG00000014855)	ENSUMAG00000014850	ENSUMAG00000014837	LRRC8E (ENSUMAG00000014821)	SNAPC2 (ENSUMAG00000014809)	TIMM44 (ENSUMAG00000014804)	ELAVL1 (ENSUMAG00000014798)	ENSUMAG00000014787	FBN3 (ENSUMAG00000014709)	CERS4 (ENSUMAG00000014653) ##22	ENSUMAG00000014644	NDUFA7 (ENSUMAG00000014641)	ENSUMAG00000014631	ENSUMAG00000014625	ANGPTL4 (ENSUMAG00000014616)	RAB11B (ENSUMAG00000014594)	MARCHF2 (ENSUMAG00000014582)	HNRNPM (ENSUMAG00000014575)	PRAM1 (ENSUMAG00000014561)	ZNF414 (ENSUMAG00000014560)	MYO1F (ENSUMAG00000013083)	ADAMTS10 (ENSUMAG00000012829)	ACTL9 (ENSUMAG00000012814)	OR2Z1 (ENSUMAG00000012810)	ENSUMAG00000012806
Giant Panda	MODERN SPECIES	14	ENSAMEG00000008547	TRAPPC5 (ENSAMEG00000026028)	FCER2 (ENSAMEG00000008548)	CLEC4G (ENSAMEG00000008566)	ENSAMEG00000008580	EVI5L (ENSAMEG00000008589)	ENSAMEG00000030048	LRRC8E (ENSAMEG00000008598)	MAP2K7 (ENSAMEG00000008601)	TGFBR3L (ENSAMEG00000024560)	SNAPC2 (ENSAMEG00000024571)	TIMM44 (ENSAMEG00000008627)	ELAVL1 (ENSAMEG00000008657)	ENSAMEG00000025518	FBN3 (ENSAMEG00000008689)	CERS4 (ENSAMEG00000004854) ##22	CD320 (ENSAMEG00000023536)	NDUFA7 (ENSAMEG00000004906)	RPS28 (ENSAMEG00000004917)	KANK3 (ENSAMEG00000004918)	ANGPTL4 (ENSAMEG00000030891)	RAB11B (ENSAMEG00000004955)	MARCHF2 (ENSAMEG00000004969)	HNRNPM (ENSAMEG00000004979)	PRAM1 (ENSAMEG00000030135)	ZNF414 (ENSAMEG00000005011)	MYO1F (ENSAMEG00000005023)	ADAMTS10 (ENSAMEG00000005088)	NFILZ (ENSAMEG00000027176)	ACTL9 (ENSAMEG00000018946)	ENSAMEG00000018965
Felidae	ANCESTRAL SPECIES	21	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Panthera	ANCESTRAL SPECIES	15	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000163126	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000162574	ENSGT00940000161836	ENSGT00910000144211.n.b	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT01090000260018.B.a.b
leopard	MODERN SPECIES	110	STXBP2 (ENSPPRG00000015733)	RETN (ENSPPRG00000013045)	FCER2 (ENSPPRG00000012302)	CLEC4G (ENSPPRG00000010388)	ENSPPRG00000010164	ENSPPRG00000009102	EVI5L (ENSPPRG00000008780)	PRR36 (ENSPPRG00000005576)	LRRC8E (ENSPPRG00000004190)	MAP2K7 (ENSPPRG00000004029)	TGFBR3L (ENSPPRG00000003390)	SNAPC2 (ENSPPRG00000003265)	CTXN1 (ENSPPRG00000015168)	TIMM44 (ENSPPRG00000003024)	ELAVL1 (ENSPPRG00000002521)	CERS4 (ENSPPRG00000011929) ##22	NDUFA7 (ENSPPRG00000011600)	RPS28 (ENSPPRG00000011146)	KANK3 (ENSPPRG00000011100)	ANGPTL4 (ENSPPRG00000010336)	RAB11B (ENSPPRG00000010160)	MARCHF2 (ENSPPRG00000009920)	HNRNPM (ENSPPRG00000009284)	PRAM1 (ENSPPRG00000007623)	ZNF414 (ENSPPRG00000006391)	MYO1F (ENSPPRG00000004883)	ADAMTS10 (ENSPPRG00000003456)	ACTL9 (ENSPPRG00000014868)	ENSPPRG00000000829	ADGRE1 (ENSPPRG00000000199)
lion	MODERN SPECIES	2	TRAPPC5 (ENSPLOG00000001688)	FCER2 (ENSPLOG00000001660)	CLEC4G (ENSPLOG00000001631)	ENSPLOG00000001611	ENSPLOG00000001596	EVI5L (ENSPLOG00000001498)	LRRC8E (ENSPLOG00000001451)	MAP2K7 (ENSPLOG00000001428)	TGFBR3L (ENSPLOG00000001412)	SNAPC2 (ENSPLOG00000001397)	CTXN1 (ENSPLOG00000001383)	TIMM44 (ENSPLOG00000001371)	ELAVL1 (ENSPLOG00000001337)	ENSPLOG00000001302	FBN3 (ENSPLOG00000001105)	CERS4 (ENSPLOG00000000936) ##22	CD320 (ENSPLOG00000000884)	NDUFA7 (ENSPLOG00000000859)	RPS28 (ENSPLOG00000000846)	KANK3 (ENSPLOG00000000830)	ANGPTL4 (ENSPLOG00000000798)	RAB11B (ENSPLOG00000000764)	MARCHF2 (ENSPLOG00000000740)	HNRNPM (ENSPLOG00000000698)	ZNF414 (ENSPLOG00000000611)	MYO1F (ENSPLOG00000000563)	ADAMTS10 (ENSPLOG00000000533)	NFILZ (ENSPLOG00000000510)	ACTL9 (ENSPLOG00000000500)	OR2Z1 (ENSPLOG00000000490)	ENSPLOG00000000477
Tiger	MODERN SPECIES	332	PNPLA6 (ENSPTIG00000019656)	ENSPTIG00000018710	PET100 (ENSPTIG00000017990)	PCP2 (ENSPTIG00000016978)	STXBP2 (ENSPTIG00000013956)	ENSPTIG00000011676	TRAPPC5 (ENSPTIG00000011386)	CLEC4G (ENSPTIG00000010368)	ENSPTIG00000010025	EVI5L (ENSPTIG00000020212)	LRRC8E (ENSPTIG00000019015)	MAP2K7 (ENSPTIG00000016520)	SNAPC2 (ENSPTIG00000016014)	TIMM44 (ENSPTIG00000014893)	ELAVL1 (ENSPTIG00000013602)	ENSPTIG00000015986 ##22	ENSPTIG00000015497	NDUFA7 (ENSPTIG00000015048)	ENSPTIG00000014735	ENSPTIG00000013659	ANGPTL4 (ENSPTIG00000013109)	ENSPTIG00000012555	ENSPTIG00000011939	MARCHF2 (ENSPTIG00000011536)	HNRNPM (ENSPTIG00000003024)	PRAM1 (ENSPTIG00000021389)	ENSPTIG00000020119	MYO1F (ENSPTIG00000015928)	ENSPTIG00000008136	ENSPTIG00000020462	ADGRE1 (ENSPTIG00000019039)
Cat	MODERN SPECIES	1	FCER2 (ENSFCAG00000001601)	CLEC4G (ENSFCAG00000001602)	ENSFCAG00000023117	EVI5L (ENSFCAG00000019097)	PRR36 (ENSFCAG00000045070)	LRRC8E (ENSFCAG00000014942)	MAP2K7 (ENSFCAG00000014944)	TGFBR3L (ENSFCAG00000040407)	SNAPC2 (ENSFCAG00000014945)	CTXN1 (ENSFCAG00000026644)	TIMM44 (ENSFCAG00000014946)	ELAVL1 (ENSFCAG00000034143)	ENSFCAG00000046096	FBN3 (ENSFCAG00000014948)	CD320 (ENSFCAG00000002180)	CERS4 (ENSFCAG00000024070) ##22	NDUFA7 (ENSFCAG00000015214)	RPS28 (ENSFCAG00000024931)	KANK3 (ENSFCAG00000024416)	ANGPTL4 (ENSFCAG00000015215)	RAB11B (ENSFCAG00000015216)	MARCHF2 (ENSFCAG00000015217)	HNRNPM (ENSFCAG00000015218)	ZNF414 (ENSFCAG00000015220)	MYO1F (ENSFCAG00000015221)	ADAMTS10 (ENSFCAG00000015222)	ENSFCAG00000048545	ACTL9 (ENSFCAG00000027714)	OR2Z1 (ENSFCAG00000052785)	ENSFCAG00000000243	ADGRE1 (ENSFCAG00000005054)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00950000183005.b.c.a
Chiroptera	ANCESTRAL SPECIES	31	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00960000189690	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000162163	ENSGT00940000161354
Microchiroptera	ANCESTRAL SPECIES	30	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00960000189690	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000162163	ENSGT00940000161354
Greater horseshoe bat	MODERN SPECIES	9	CLEC4G (ENSRFEG00010011529)	ENSRFEG00010011601	ENSRFEG00010011629	EVI5L (ENSRFEG00010011659)	PRR36 (ENSRFEG00010011799)	LRRC8E (ENSRFEG00010011841)	MAP2K7 (ENSRFEG00010011886)	TGFBR3L (ENSRFEG00010012012)	SNAPC2 (ENSRFEG00010012030)	CTXN1 (ENSRFEG00010012078)	TIMM44 (ENSRFEG00010012105)	ELAVL1 (ENSRFEG00010012172)	CCL25 (ENSRFEG00010012228)	ENSRFEG00010012244	ENSRFEG00010012272	CERS4 (ENSRFEG00010012440) ##22	CD320 (ENSRFEG00010012574)	ENSRFEG00010012682	RPS28 (ENSRFEG00010012761)	KANK3 (ENSRFEG00010012828)	ANGPTL4 (ENSRFEG00010012980)	RAB11B (ENSRFEG00010013186)	MARCHF2 (ENSRFEG00010013268)	ENSRFEG00010013395	PRAM1 (ENSRFEG00010013477)	ZNF414 (ENSRFEG00010013523)	MYO1F (ENSRFEG00010013682)	ADAMTS10 (ENSRFEG00010013786)	ENSRFEG00010013846	ENSRFEG00010010435	ADGRE1 (ENSRFEG00010011348)
Microbat	MODERN SPECIES	1558															ENSMLUG00000029231	CERS4 (ENSMLUG00000003180) ##22	CD320 (ENSMLUG00000003185)	NDUFA7 (ENSMLUG00000003194)	RPS28 (ENSMLUG00000023621)	KANK3 (ENSMLUG00000029771)	ANGPTL4 (ENSMLUG00000023180)	ENSMLUG00000006677	MARCHF2 (ENSMLUG00000006686)	ENSMLUG00000006696	PRAM1 (ENSMLUG00000006719)	ZNF414 (ENSMLUG00000006742)	MYO1F (ENSMLUG00000006755)	ADAMTS10 (ENSMLUG00000008143)
Megabat	MODERN SPECIES	510														ENSPVAG00000009628	FBN3 (ENSPVAG00000009630)	CERS4 (ENSPVAG00000009639) ##22	CD320 (ENSPVAG00000009641)	NDUFA7 (ENSPVAG00000009642)	KANK3 (ENSPVAG00000009643)	ANGPTL4 (ENSPVAG00000009644)	RAB11B (ENSPVAG00000009645)	MARCHF2 (ENSPVAG00000009646)	HNRNPM (ENSPVAG00000009647)	ENSPVAG00000009650	ZNF414 (ENSPVAG00000009654)	MYO1F (ENSPVAG00000009655)	ADAMTS10 (ENSPVAG00000009658)
Equus	ANCESTRAL SPECIES	34	ENSGT00940000161836.b.b	ENSGT00940000161836.b.a	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01100000263557.A.b.a.a.a.a	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a.h	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b
Horse	MODERN SPECIES	28	ENSECAG00000003702	ENSECAG00000050130	ENSECAG00000054445	ENSECAG00000021212	ENSECAG00000052053	EVI5L (ENSECAG00000023878)	PRR36 (ENSECAG00000033073)	LRRC8E (ENSECAG00000000299)	MAP2K7 (ENSECAG00000009412)	TGFBR3L (ENSECAG00000031937)	SNAPC2 (ENSECAG00000011011)	TIMM44 (ENSECAG00000011409)	ELAVL1 (ENSECAG00000019459)	CCL25 (ENSECAG00000020264)	FBN3 (ENSECAG00000036087)	CERS4 (ENSECAG00000000369) ##22	CD320 (ENSECAG00000013583)	NDUFA7 (ENSECAG00000014853)	KANK3 (ENSECAG00000017445)	ANGPTL4 (ENSECAG00000018927)	GPR83 (ENSECAG00000020552)	MRE11 (ENSECAG00000000295)	ANKRD49 (ENSECAG00000024188)	PIWIL4 (ENSECAG00000024385)	FUT4 (ENSECAG00000024199)	AMOTL1 (ENSECAG00000012681)	CWC15 (ENSECAG00000013314)	ENSECAG00000057140	ENSECAG00000036765	ENDOD1 (ENSECAG00000017667)	ENSECAG00000030703
Donkey	MODERN SPECIES	12	ENSEASG00005014366	ENSEASG00005014369	ENSEASG00005003843	ENSEASG00005003839	ENSEASG00005003835	EVI5L (ENSEASG00005003827)	ENSEASG00005034812	LRRC8E (ENSEASG00005003819)	MAP2K7 (ENSEASG00005025669)	ENSEASG00005029656	SNAPC2 (ENSEASG00005003809)	CTXN1 (ENSEASG00005003806)	TIMM44 (ENSEASG00005003802)	ELAVL1 (ENSEASG00005003790)	CCL25 (ENSEASG00005003785)	CERS4 (ENSEASG00005003733) ##22	CD320 (ENSEASG00005003728)	ENSEASG00005032734	RPS28 (ENSEASG00005003719)	KANK3 (ENSEASG00005032900)	ANGPTL4 (ENSEASG00005003697)	RAB11B (ENSEASG00005003708)	MARCHF2 (ENSEASG00005025812)	HNRNPM (ENSEASG00005022434)	PRAM1 (ENSEASG00005025992)	ZNF414 (ENSEASG00005022454)	MYO1F (ENSEASG00005022458)	ADAMTS10 (ENSEASG00005022481)	NFILZ (ENSEASG00005034919)	ENSEASG00005018314	ENSEASG00005032689
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT01030000234515.a.b.b ##22
Common shrew	MODERN SPECIES	7279																CERS4 (ENSSARG00000009918) ##22
Hedgehog	MODERN SPECIES	171																CERS4 (ENSEEUG00000012485) ##22
Atlantogenata	ANCESTRAL SPECIES	95	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00530000063861.a	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659.d	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404
Xenarthra	ANCESTRAL SPECIES	390																ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659.d	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158404
Armadillo	MODERN SPECIES	1178															ENSDNOG00000039283	CERS4 (ENSDNOG00000005364) ##22	CD320 (ENSDNOG00000018248)	ENSDNOG00000033615	RPS28 (ENSDNOG00000038487)	KANK3 (ENSDNOG00000011656)	ANGPTL4 (ENSDNOG00000036696)	ENSDNOG00000014618	MARCHF2 (ENSDNOG00000035885)	HNRNPM (ENSDNOG00000012157)	PRAM1 (ENSDNOG00000012184)	ZNF414 (ENSDNOG00000025224)	ADAMTS10 (ENSDNOG00000000872)
Afrotheria	ANCESTRAL SPECIES	96	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659.d	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT01090000260018.B.a.b
Afrotheria_a	ANCESTRAL SPECIES	98	ENSGT00390000000976	ENSGT00940000162574	ENSGT00940000161836	ENSGT00940000155012	ENSGT00940000162906.c.b	ENSGT00940000153846.a.b	ENSGT00940000154382.a.a	ENSGT00940000159311.c	ENSGT00940000158914	ENSGT00390000017407	ENSGT00940000154412.C	ENSGT00390000000051	ENSGT00940000155528	ENSGT01010000222539	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00730000111436	ENSGT00390000006553	ENSGT00910000144227.s.a	ENSGT00940000161178	ENSGT00940000159478	ENSGT00940000161659.d	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT01090000260018.B.a.b
Elephant	MODERN SPECIES	37	TRAPPC5 (ENSLAFG00000005857)	FCER2 (ENSLAFG00000028940)	CLEC4G (ENSLAFG00000021587)	ENSLAFG00000005594	ENSLAFG00000026544	EVI5L (ENSLAFG00000004779)	ENSLAFG00000023073	LRRC8E (ENSLAFG00000002159)	MAP2K7 (ENSLAFG00000005010)	SNAPC2 (ENSLAFG00000023323)	CTXN1 (ENSLAFG00000018067)	TIMM44 (ENSLAFG00000030514)	ELAVL1 (ENSLAFG00000004219)	ENSLAFG00000022991	FBN3 (ENSLAFG00000029310)	CERS4 (ENSLAFG00000012414) ##22	ENSLAFG00000014131	NDUFA7 (ENSLAFG00000018390)	RPS28 (ENSLAFG00000029923)	ENSLAFG00000014137	ANGPTL4 (ENSLAFG00000005770)	RAB11B (ENSLAFG00000013598)	MARCHF2 (ENSLAFG00000013602)	HNRNPM (ENSLAFG00000013603)	PRAM1 (ENSLAFG00000025890)	ZNF414 (ENSLAFG00000021907)	MYO1F (ENSLAFG00000011461)	ADAMTS10 (ENSLAFG00000011470)	OR2Z1 (ENSLAFG00000004122)	ENSLAFG00000028595
Tenrec	MODERN SPECIES	128																ENSETEG00000012683 ##22
Platypus	MODERN SPECIES	84	HNRNPM (ENSOANG00000010259)	MARCHF2 (ENSOANG00000044840)	ENSOANG00000045493	ENSOANG00000049344	ENSOANG00000040589	ENSOANG00000010058	RPS28 (ENSOANG00000047078)	NDUFA7 (ENSOANG00000041371)	ENSOANG00000044705	ENSOANG00000002981	ENSOANG00000002980	ENSOANG00000048974	ENSOANG00000014639	ELAVL1 (ENSOANG00000014244)	FBN3 (ENSOANG00000006384)	ENSOANG00000012135 ##22	ENSOANG00000050796	ADAMTS18 (ENSOANG00000000765)	ENSOANG00000044665	ENSOANG00000029789	ENSOANG00000036397	ENSOANG00000034044	ENSOANG00000049686	ENSOANG00000021183	ENSOANG00000031495	CDH8 (ENSOANG00000004496)	ENSOANG00000031988	ENSOANG00000030315	CDH11 (ENSOANG00000045203)	CDH5 (ENSOANG00000021655)	ENSOANG00000047853
Anura	ANCESTRAL SPECIES	263												ENSGT00940000154595	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00950000183158.B.b	ENSGT01030000234515.a.b.b ##22	ENSGT00510000047872	ENSGT00940000158753	ENSGT00940000159993	ENSGT00390000014000	ENSGT00940000160274	ENSGT00390000011943.b
Leishan spiny toad	MODERN SPECIES		ENSLLEG00000002675	ENSLLEG00000002660	SH2D4A (ENSLLEG00000002624)	CSGALNACT1 (ENSLLEG00000002574)	INTS10 (ENSLLEG00000002389)	HGSNAT (ENSLLEG00000002203)	POMK (ENSLLEG00000002153)	FNTA (ENSLLEG00000002129)	ENSLLEG00000002109	KCMF1 (ENSLLEG00000002059)	ENSLLEG00000002032	SLC20A2 (ENSLLEG00000001933)	ENSLLEG00000001893	ENSLLEG00000001878	ENSLLEG00000001715	ENSLLEG00000001652 ##22	ENSLLEG00000001635	LSM7 (ENSLLEG00000001566)	SPPL2B (ENSLLEG00000001488)	ENSLLEG00000001463	TMPRSS9 (ENSLLEG00000001418)	TIMM13 (ENSLLEG00000001377)	LMNB2 (ENSLLEG00000001327)	ENSLLEG00000001294	PPP1R3B (ENSLLEG00000001279)	ENSLLEG00000001256	ENSLLEG00000001244	SAFB (ENSLLEG00000001137)	ENSLLEG00000001115	ENSLLEG00000000630	ENSLLEG00000000501
Frog	MODERN SPECIES		ENSXETG00000047759	ENSXETG00000042954	ptprs (ENSXETG00000005350)	ENSXETG00000043297	ENSXETG00000044743	ENSXETG00000042124	ENSXETG00000041878	noa1 (ENSXETG00000005348)	polr2b (ENSXETG00000005329)	ENSXETG00000048239	rest (ENSXETG00000038650)	hnrnpm (ENSXETG00000001777)	timm44 (ENSXETG00000001779)	ctxn1 (ENSXETG00000046070)	fbn3 (ENSXETG00000001781)	cers4 (ENSXETG00000036458) ##22	lsm7 (ENSXETG00000022166)	sppl2b (ENSXETG00000001791)	ENSXETG00000047842	rpl36 (ENSXETG00000039651)	tmprss9 (ENSXETG00000001793)	timm13 (ENSXETG00000046447)	lmnb2 (ENSXETG00000001795)	lrrc14b (ENSXETG00000001796)	XB5954422 [provisional] (ENSXETG00000006382)	gramd2a (ENSXETG00000030132)	pias4 (ENSXETG00000006386)	fbxl16 (ENSXETG00000006391)	ENSXETG00000047159	dapk3 (ENSXETG00000006396)	atcay (ENSXETG00000006394)
Elephant shark	MODERN SPECIES	1570	ENSCMIG00000018208	ENSCMIG00000018207	lpl (ENSCMIG00000018205)	tpm4a (ENSCMIG00000018088)	ENSCMIG00000017983	ENSCMIG00000017967	ENSCMIG00000017966	ENSCMIG00000017965	ptbp1b (ENSCMIG00000017861)	wdr55 (ENSCMIG00000017792)	ENSCMIG00000017783	tax1bp3 (ENSCMIG00000017776)	ctns (ENSCMIG00000017768)	CIB3 (ENSCMIG00000017766)	ENSCMIG00000017764	ENSCMIG00000017762 ##22	acsbg2 (ENSCMIG00000017738)	mllt1b (ENSCMIG00000017728)	acer1 (ENSCMIG00000017723)	ENSCMIG00000017720	ENSCMIG00000017719 ##31	ENSCMIG00000017717	myo1f (ENSCMIG00000017505)	adamts10 (ENSCMIG00000017452)	zap70 (ENSCMIG00000017443)	ENSCMIG00000017441	ENSCMIG00000017439	ACTL9 (ENSCMIG00000017437)	ENSCMIG00000017435	ENSCMIG00000017431