Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Stickleback	MODERN SPECIES	5	chad (ENSGACG00000004134) #7	ENSGACG00000004139 #8	SLC16A5 (ENSGACG00000004150) #9	kctd2 (ENSGACG00000004164) #10	tubgcp2 (ENSGACG00000004173) #11	ENSGACG00000004175 #12	chuk (ENSGACG00000004179) #13	ENSGACG00000004204	PSD (ENSGACG00000004207) #14	zgc:92749 (ENSGACG00000004214) #15	ENSGACG00000004220 #16	MAT1A (ENSGACG00000004225) #17	ENSGACG00000004243 #19	KANSL1 (ENSGACG00000004258) #20	CRHR1 (ENSGACG00000004272) #21	FAM171A2 (ENSGACG00000004288) #22	grnb (ENSGACG00000004305) #24	ENSGACG00000004334 #25	ENSGACG00000004343 #26	ENSGACG00000004358	GRB7 (ENSGACG00000004362) #27	ENSGACG00000004377 #28	FMNL1 (ENSGACG00000004388) #29	ccr10 (ENSGACG00000004402) #30	ENSGACG00000004411	cpped1 (ENSGACG00000004415)	ercc4 (ENSGACG00000004432)	MRTFB (ENSGACG00000004442)	ubald1b (ENSGACG00000004450)	foxj1b (ENSGACG00000004462)	ENSGACG00000004465
Lumpfish	MODERN SPECIES	10	nploc4 (ENSCLMG00005003122)	pde6gb (ENSCLMG00005003084)	OXLD1 (ENSCLMG00005003082)	gprc5c (ENSCLMG00005003074)	GPR142 (ENSCLMG00005003072)	ENSCLMG00005003068	ENSCLMG00005003059 #12	CHUK (ENSCLMG00005002340) #13	ENSCLMG00005002312 #14	ELOVL3 (ENSCLMG00005002309) #15	ENSCLMG00005002308 #16	ENSCLMG00005002306 #19	ENSCLMG00005002305	KANSL1 (ENSCLMG00005002304) #20	CRHR1 (ENSCLMG00005002253) #21	FAM171A2 (ENSCLMG00005002198) #22	ENSCLMG00005002197 #23	ENSCLMG00005002196 #24	ENSCLMG00005002195 #25	ENSCLMG00005002194 #26	GRB7 (ENSCLMG00005002193) #27	SRCIN1 (ENSCLMG00005002192) #28	ENSCLMG00005002182 ##29	ccr10 (ENSCLMG00005002178) #30	ENSCLMG00005002177 #31	ENSCLMG00005002174 #33	ENSCLMG00005002172 #34	ENSCLMG00005002170 #35	ENSCLMG00005002168 #36	ENSCLMG00005002164 #37	HID1 (ENSCLMG00005002159)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Pike perch	MODERN SPECIES	3	acsf2 (ENSSLUG00000004459)	ENSSLUG00000004114 #8	SLC16A5 (ENSSLUG00000004083) #9	kctd2 (ENSSLUG00000004071) #10	tubgcp2 (ENSSLUG00000004021) #11	ENSSLUG00000003974 #12	chuk (ENSSLUG00000003917) #13	PSD (ENSSLUG00000003861) #14	zgc:92749 (ENSSLUG00000003854) #15	ENSSLUG00000003849 #16	ENSSLUG00000003844	ENSSLUG00000003488 #17	ENSSLUG00000003352 #19	KANSL1 (ENSSLUG00000003306) #20	CRHR1 (ENSSLUG00000003239) #21	FAM171A2 (ENSSLUG00000003217) #22	grnb (ENSSLUG00000003177) #24	ENSSLUG00000020381 #26	GRB7 (ENSSLUG00000020310) #27	ENSSLUG00000020295	SRCIN1 (ENSSLUG00000020265) #28	FMNL1 (ENSSLUG00000019870) #29	ccr10 (ENSSLUG00000019813) #30	ENSSLUG00000019810 #31	ENSSLUG00000019805 #33	ENSSLUG00000019800	exoc7 (ENSSLUG00000019662)	tvp23b (ENSSLUG00000019620)	trim16 (ENSSLUG00000019618)	FADS6 (ENSSLUG00000019612)	USH1G (ENSSLUG00000019604)
Channel bull blenny	MODERN SPECIES	10	acsf2 (ENSCGOG00000018879)	SLC16A5 (ENSCGOG00000018870) #9	kctd2 (ENSCGOG00000018866) #10	tubgcp2 (ENSCGOG00000018863) #11	ENSCGOG00000018862 #12	chuk (ENSCGOG00000018218) #13	ENSCGOG00000017559 #14	zgc:92749 (ENSCGOG00000017529) #15	ENSCGOG00000017528 #16	ENSCGOG00000016722 #17	ghrhr2 (ENSCGOG00000016694) #18	ENSCGOG00000016670 #19	KANSL1 (ENSCGOG00000016664) #20	ENSCGOG00000016663	CRHR1 (ENSCGOG00000016622) #21	FAM171A2 (ENSCGOG00000016607) #22	grnb (ENSCGOG00000016598) #24	ENSCGOG00000016594 #25	ENSCGOG00000016540 #26	GRB7 (ENSCGOG00000016530) #27	SRCIN1 (ENSCGOG00000016523) #28	FMNL1 (ENSCGOG00000016150) #29	ccr10 (ENSCGOG00000016135) #30	ENSCGOG00000016131 #31	ENSCGOG00000016128 #32	ENSCGOG00000016125 #34	ENSCGOG00000016124 #35	ENSCGOG00000016123 #36	ENSCGOG00000016105 #37	HID1 (ENSCGOG00000015729)	OTOP3 (ENSCGOG00000015720)
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Gilthead seabream	MODERN SPECIES	12	acsf2 (ENSSAUG00010025074)	ENSSAUG00010025044 #8	SLC16A5 (ENSSAUG00010025043) #9	kctd2 (ENSSAUG00010025042) #10	tubgcp2 (ENSSAUG00010025037) #11	ENSSAUG00010025033 #12	chuk (ENSSAUG00010025022) #13	ENSSAUG00010024473 #14	zgc:92749 (ENSSAUG00010024466) #15	ENSSAUG00010024465 #16	ENSSAUG00010024454 #17	ghrhr2 (ENSSAUG00010024453) #18	ENSSAUG00010024452 #19	KANSL1 (ENSSAUG00010024449) #20	CRHR1 (ENSSAUG00010023307) #21	FAM171A2 (ENSSAUG00010023288) #22	grnb (ENSSAUG00010023287) #24	ENSSAUG00010023286 #25	ENSSAUG00010023284 #26	GRB7 (ENSSAUG00010023281) #27	SRCIN1 (ENSSAUG00010023262) #28	FMNL1 (ENSSAUG00010021212) #29	ccr10 (ENSSAUG00010021155) #30	ENSSAUG00010021154 #31	ENSSAUG00010021152 #33	ENSSAUG00010021150 #34	ENSSAUG00010021148 #35	ENSSAUG00010021146 #36	ENSSAUG00010021142 #37	HID1 (ENSSAUG00010021127)	OTOP3 (ENSSAUG00010021125)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	27	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00940000164426.c
European seabass	MODERN SPECIES	11	ENSDLAG00005001660 #8	ENSDLAG00005001686 #9	kctd2 (ENSDLAG00005027650) #10	TUBGCP2 (ENSDLAG00005001711) #11	ENSDLAG00005001793 #12	ENSDLAG00005001836 #13	ENSDLAG00005001991 #14	ENSDLAG00005027391 #15	ENSDLAG00005002289 #20	ENSDLAG00005027928 #15	ENSDLAG00005002164 #16	ENSDLAG00005002171 #17	ENSDLAG00005002216 #18	ENSDLAG00005002239 #19	ENSDLAG00005002695 #21	ENSDLAG00005027422 #22	grnb (ENSDLAG00005005875) #24	ENSDLAG00005005934 #25	ENSDLAG00005029537 #26	ENSDLAG00005005980 #27	ENSDLAG00005006070 #28	ENSDLAG00005006315	ccr10 (ENSDLAG00005010705) #30	ENSDLAG00005010712 #31	ENSDLAG00005028436 #32	ENSDLAG00005026661 #33	ENSDLAG00005031195 #33	ENSDLAG00005010738 #34	ENSDLAG00005010744 #35	ENSDLAG00005027435 #36	ENSDLAG00005010755
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005017275	ENSLCRG00005017279	ENSLCRG00005017280	ENSLCRG00005017281	ENSLCRG00005017282	AATK (ENSLCRG00005017283)	BAIAP2 (ENSLCRG00005017285)	CHMP6 (ENSLCRG00005017289)	ENSLCRG00005017293	ELOVL6 (ENSLCRG00005017296) #15	ENSLCRG00005017298 #16	ENSLCRG00005017300 #17	ENSLCRG00005017314 #19	KANSL1 (ENSLCRG00005017316) #20	CRHR1 (ENSLCRG00005017330) #21	FAM171A2 (ENSLCRG00005019394) #22	grnb (ENSLCRG00005019396) #24	ENSLCRG00005019399 #25	ENSLCRG00005019402 #26	GRB7 (ENSLCRG00005019403) #27	SRCIN1 (ENSLCRG00005019405) #28	FMNL1 (ENSLCRG00005019414) #29	ccr10 (ENSLCRG00005019675) #30	ENSLCRG00005019676	ENSLCRG00005019677 #33	ENSLCRG00005019678 #34	ENSLCRG00005019679 #35	ENSLCRG00005019680 #36	ENSLCRG00005019681 #37	ENSLCRG00005019683 #33	SOST (ENSLCRG00005019685)
Ballan wrasse	MODERN SPECIES	363													ENSLBEG00000009585	ENSLBEG00000009564	CRHR1 (ENSLBEG00000009498) #21	FAM171A2 (ENSLBEG00000009452) #22	grnb (ENSLBEG00000009347) #24	ENSLBEG00000009296 #25	ARF1 (ENSLBEG00000009272) #26	GRB7 (ENSLBEG00000009245) #27	SRCIN1 (ENSLBEG00000009097) #28	ENSLBEG00000009023 #29	ccr10 (ENSLBEG00000008994) #30	ENSLBEG00000008961 #31	ENSLBEG00000008921 #32	ENSLBEG00000008893 #33	ENSLBEG00000008883 #34	ENSLBEG00000008854 #35	ENSLBEG00000008829 #36	ENSLBEG00000008802	cep131 (ENSLBEG00000008605)