Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT01030000234575.c.a.a.a.b #31	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b
Ballan wrasse	MODERN SPECIES	363													ENSLBEG00000009585 #19	ENSLBEG00000009564 #20	CRHR1 (ENSLBEG00000009498) #21	FAM171A2 (ENSLBEG00000009452) #22	grnb (ENSLBEG00000009347) #23	ENSLBEG00000009296 #24	ARF1 (ENSLBEG00000009272) #25	GRB7 (ENSLBEG00000009245) #26	SRCIN1 (ENSLBEG00000009097) #27	ENSLBEG00000009023 #28	ccr10 (ENSLBEG00000008994) #29	ENSLBEG00000008961 #30	ENSLBEG00000008921 #31	ENSLBEG00000008893 #32	ENSLBEG00000008883 #33	ENSLBEG00000008854 #34	ENSLBEG00000008829 #35	ENSLBEG00000008802 #36	cep131 (ENSLBEG00000008605) #37
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT01030000234575.c.a.a.a.b #31	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c.d	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b	ENSGT00390000003070.a.b.b
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000156830.a	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c.d	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b	ENSGT00390000003070.a.b.b
Stickleback	MODERN SPECIES	5	chad (ENSGACG00000004134)	ENSGACG00000004139	SLC16A5 (ENSGACG00000004150)	kctd2 (ENSGACG00000004164)	tubgcp2 (ENSGACG00000004173)	ENSGACG00000004175	chuk (ENSGACG00000004179)	ENSGACG00000004204	PSD (ENSGACG00000004207)	zgc:92749 (ENSGACG00000004214)	ENSGACG00000004220	MAT1A (ENSGACG00000004225)	ENSGACG00000004243	KANSL1 (ENSGACG00000004258)	CRHR1 (ENSGACG00000004272) #21	FAM171A2 (ENSGACG00000004288) #22	grnb (ENSGACG00000004305) #23	ENSGACG00000004334 #24	ENSGACG00000004343 #25	ENSGACG00000004358	GRB7 (ENSGACG00000004362) #26	ENSGACG00000004377 #27	FMNL1 (ENSGACG00000004388) #28	ccr10 (ENSGACG00000004402) #29	ENSGACG00000004411	cpped1 (ENSGACG00000004415)	ercc4 (ENSGACG00000004432)	MRTFB (ENSGACG00000004442)	ubald1b (ENSGACG00000004450)	foxj1b (ENSGACG00000004462)	ENSGACG00000004465
Lumpfish	MODERN SPECIES	10	nploc4 (ENSCLMG00005003122)	pde6gb (ENSCLMG00005003084)	OXLD1 (ENSCLMG00005003082)	gprc5c (ENSCLMG00005003074)	GPR142 (ENSCLMG00005003072)	ENSCLMG00005003068	ENSCLMG00005003059	CHUK (ENSCLMG00005002340)	ENSCLMG00005002312	ELOVL3 (ENSCLMG00005002309)	ENSCLMG00005002308	ENSCLMG00005002306	ENSCLMG00005002305	KANSL1 (ENSCLMG00005002304)	CRHR1 (ENSCLMG00005002253) #21	FAM171A2 (ENSCLMG00005002198) #22	ENSCLMG00005002197	ENSCLMG00005002196 #23	ENSCLMG00005002195 #24	ENSCLMG00005002194 #25	GRB7 (ENSCLMG00005002193) #26	SRCIN1 (ENSCLMG00005002192) #27	ENSCLMG00005002182 ##28	ccr10 (ENSCLMG00005002178) #29	ENSCLMG00005002177 #30	ENSCLMG00005002174 #32	ENSCLMG00005002172 #33	ENSCLMG00005002170 #34	ENSCLMG00005002168 #35	ENSCLMG00005002164	HID1 (ENSCLMG00005002159)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156830.a	ENSGT00940000166090	ENSGT00940000159666.c.d	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT01030000234575.c.a.a.a.b #31	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Pike perch	MODERN SPECIES	3	acsf2 (ENSSLUG00000004459)	ENSSLUG00000004114	SLC16A5 (ENSSLUG00000004083)	kctd2 (ENSSLUG00000004071)	tubgcp2 (ENSSLUG00000004021)	ENSSLUG00000003974	chuk (ENSSLUG00000003917)	PSD (ENSSLUG00000003861)	zgc:92749 (ENSSLUG00000003854)	ENSSLUG00000003849	ENSSLUG00000003844	ENSSLUG00000003488	ENSSLUG00000003352	KANSL1 (ENSSLUG00000003306)	CRHR1 (ENSSLUG00000003239) #21	FAM171A2 (ENSSLUG00000003217) #22	grnb (ENSSLUG00000003177) #23	ENSSLUG00000020381 #25	GRB7 (ENSSLUG00000020310) #26	ENSSLUG00000020295	SRCIN1 (ENSSLUG00000020265) #27	FMNL1 (ENSSLUG00000019870) #28	ccr10 (ENSSLUG00000019813) #29	ENSSLUG00000019810 #30	ENSSLUG00000019805 #32	ENSSLUG00000019800	exoc7 (ENSSLUG00000019662)	tvp23b (ENSSLUG00000019620)	trim16 (ENSSLUG00000019618)	FADS6 (ENSSLUG00000019612)	USH1G (ENSSLUG00000019604)
Channel bull blenny	MODERN SPECIES	10	acsf2 (ENSCGOG00000018879)	SLC16A5 (ENSCGOG00000018870)	kctd2 (ENSCGOG00000018866)	tubgcp2 (ENSCGOG00000018863)	ENSCGOG00000018862	chuk (ENSCGOG00000018218)	ENSCGOG00000017559	zgc:92749 (ENSCGOG00000017529)	ENSCGOG00000017528	ENSCGOG00000016722	ghrhr2 (ENSCGOG00000016694)	ENSCGOG00000016670	KANSL1 (ENSCGOG00000016664)	ENSCGOG00000016663	CRHR1 (ENSCGOG00000016622) #21	FAM171A2 (ENSCGOG00000016607) #22	grnb (ENSCGOG00000016598) #23	ENSCGOG00000016594 #24	ENSCGOG00000016540 #25	GRB7 (ENSCGOG00000016530) #26	SRCIN1 (ENSCGOG00000016523) #27	FMNL1 (ENSCGOG00000016150) #28	ccr10 (ENSCGOG00000016135) #29	ENSCGOG00000016131 #30	ENSCGOG00000016128 #31	ENSCGOG00000016125 #33	ENSCGOG00000016124 #34	ENSCGOG00000016123 #35	ENSCGOG00000016105	HID1 (ENSCGOG00000015729)	OTOP3 (ENSCGOG00000015720)
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT01030000234575.c.a.a.a.b #31	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b	ENSGT00390000003070.a.b.b
Gilthead seabream	MODERN SPECIES	12	acsf2 (ENSSAUG00010025074)	ENSSAUG00010025044	SLC16A5 (ENSSAUG00010025043)	kctd2 (ENSSAUG00010025042)	tubgcp2 (ENSSAUG00010025037)	ENSSAUG00010025033	chuk (ENSSAUG00010025022)	ENSSAUG00010024473	zgc:92749 (ENSSAUG00010024466)	ENSSAUG00010024465	ENSSAUG00010024454	ghrhr2 (ENSSAUG00010024453)	ENSSAUG00010024452	KANSL1 (ENSSAUG00010024449)	CRHR1 (ENSSAUG00010023307) #21	FAM171A2 (ENSSAUG00010023288) #22	grnb (ENSSAUG00010023287) #23	ENSSAUG00010023286 #24	ENSSAUG00010023284 #25	GRB7 (ENSSAUG00010023281) #26	SRCIN1 (ENSSAUG00010023262) #27	FMNL1 (ENSSAUG00010021212) #28	ccr10 (ENSSAUG00010021155) #29	ENSSAUG00010021154 #30	ENSSAUG00010021152 #32	ENSSAUG00010021150 #33	ENSSAUG00010021148 #34	ENSSAUG00010021146 #35	ENSSAUG00010021142	HID1 (ENSSAUG00010021127)	OTOP3 (ENSSAUG00010021125)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	27	ENSGT00940000161826.C	ENSGT00940000166090	ENSGT00940000159666.c	ENSGT00940000158336	ENSGT00940000156697	ENSGT00940000158585.g.b	ENSGT00950000182937.A.a.o	ENSGT00940000155061.a.b.k.b	ENSGT01050000244965.a.a	ENSGT01030000234578.A.b.a.a.a.a.a	ENSGT00950000183185.c.a.b.a.b	ENSGT00940000166534	ENSGT00940000155494.j	ENSGT00530000063688.b.nb.a	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #23	ENSGT00940000156497.b #24	ENSGT00950000183080.a.b.b.a.b #25	ENSGT00940000158710 #26	ENSGT00940000157961.A #27	ENSGT00940000156292.g.a #28	ENSGT01030000234667.a.a.a.a.a #29	ENSGT00940000168205 #30	ENSGT01030000234575.c.a.a.a.b #31	ENSGT00940000165400 #32	ENSGT01030000234592.A.b.b.b.a #33	ENSGT00940000164286.j.a.a.a #34	ENSGT00940000164286.j.a.b.a #35	ENSGT00940000159778.b	ENSGT00940000164426.c
European seabass	MODERN SPECIES	11	ENSDLAG00005001660	ENSDLAG00005001686	kctd2 (ENSDLAG00005027650)	TUBGCP2 (ENSDLAG00005001711)	ENSDLAG00005001793	ENSDLAG00005001836	ENSDLAG00005001991	ENSDLAG00005027391	ENSDLAG00005002289	ENSDLAG00005027928	ENSDLAG00005002164	ENSDLAG00005002171	ENSDLAG00005002216	ENSDLAG00005002239	ENSDLAG00005002695 #21	ENSDLAG00005027422 #22	grnb (ENSDLAG00005005875) #23	ENSDLAG00005005934 #24	ENSDLAG00005029537 #25	ENSDLAG00005005980 #26	ENSDLAG00005006070 #27	ENSDLAG00005006315	ccr10 (ENSDLAG00005010705) #29	ENSDLAG00005010712 #30	ENSDLAG00005028436 #31	ENSDLAG00005026661 #32	ENSDLAG00005031195 #32	ENSDLAG00005010738 #33	ENSDLAG00005010744 #34	ENSDLAG00005027435 #35	ENSDLAG00005010755
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005017275 #36	ENSLCRG00005017279	ENSLCRG00005017280	ENSLCRG00005017281	ENSLCRG00005017282	AATK (ENSLCRG00005017283)	BAIAP2 (ENSLCRG00005017285)	CHMP6 (ENSLCRG00005017289)	ENSLCRG00005017293	ELOVL6 (ENSLCRG00005017296)	ENSLCRG00005017298	ENSLCRG00005017300	ENSLCRG00005017314	KANSL1 (ENSLCRG00005017316)	CRHR1 (ENSLCRG00005017330) #21	FAM171A2 (ENSLCRG00005019394) #22	grnb (ENSLCRG00005019396) #23	ENSLCRG00005019399 #24	ENSLCRG00005019402 #25	GRB7 (ENSLCRG00005019403) #26	SRCIN1 (ENSLCRG00005019405) #27	FMNL1 (ENSLCRG00005019414) #28	ccr10 (ENSLCRG00005019675) #29	ENSLCRG00005019676	ENSLCRG00005019677 #32	ENSLCRG00005019678 #33	ENSLCRG00005019679 #34	ENSLCRG00005019680 #35	ENSLCRG00005019681	ENSLCRG00005019683 #32	SOST (ENSLCRG00005019685)