Osteoglossocephalai	ANCESTRAL SPECIES	258					ENSGT00940000157015.j	ENSGT00940000158410.h ##21	ENSGT00940000155494.i ##19	ENSGT00950000182860.a.a.a.ub.b	ENSGT00950000182818.D	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b #20	ENSGT00950000182950.C	ENSGT00940000158410.g #21	ENSGT00950000183184.b.a #22	ENSGT00940000166739	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000176123	ENSGT00940000160724	ENSGT00950000183184.b.b ##22	ENSGT00470000042293.a.b.b ##24
Clupeocephala	ANCESTRAL SPECIES	43	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000154363.B	ENSGT00940000167352	ENSGT01100000264459	ENSGT00940000166534 #18	ENSGT01030000234570.d.b.a.b.b.a.b	ENSGT01000000221280	ENSGT00950000182818.D	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000162478	ENSGT00550000075038	ENSGT00950000183160.A	ENSGT00940000163949.a
Euteleosteomorpha	ANCESTRAL SPECIES	227														ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000162478	ENSGT00550000075038	ENSGT00950000183160.A	ENSGT00940000163949.a
Acanthomorphata	ANCESTRAL SPECIES	81								ENSGT00940000155111	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000162478	ENSGT00550000075038
Euacanthomorphacea	ANCESTRAL SPECIES	21	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000155111	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000162478	ENSGT00550000075038
Percomorphaceae	ANCESTRAL SPECIES	21	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00940000164426.c
Percomorphaceae_B	ANCESTRAL SPECIES	23	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.b ##24	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Percomorphaceae_C	ANCESTRAL SPECIES	14	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Eupercaria	ANCESTRAL SPECIES	10	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Tetraodontidae	ANCESTRAL SPECIES	23	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Fugu	MODERN SPECIES		acsf2 (ENSTRUG00000010766)	chad (ENSTRUG00000011014) #7	ENSTRUG00000010603 #8	SLC16A5 (ENSTRUG00000010436) #9	kctd2 (ENSTRUG00000022690) #10	tubgcp2 (ENSTRUG00000010073) #11	ENSTRUG00000009792 #12	chuk (ENSTRUG00000009078) #13	PSD (ENSTRUG00000008695) #14	zgc:92749 (ENSTRUG00000008595) #15	ENSTRUG00000008543 #16	ENSTRUG00000025576 #19	ENSTRUG00000031032	KANSL1 (ENSTRUG00000008242) #20	CRHR1 (ENSTRUG00000008096) #21	FAM171A2 (ENSTRUG00000031143) #22	grnb (ENSTRUG00000007585) #24	ENSTRUG00000031093 #25	ENSTRUG00000028911 #26	GRB7 (ENSTRUG00000007194) #27	SRCIN1 (ENSTRUG00000006934) #28	FMNL1 (ENSTRUG00000006067) #29	ccr10 (ENSTRUG00000025631) #30	ENSTRUG00000029384 #31	ENSTRUG00000005835 #33	ENSTRUG00000019779 #34	ENSTRUG00000025069 #36	ENSTRUG00000005457 #37	HID1 (ENSTRUG00000005259)	ENSTRUG00000024162	USH1G (ENSTRUG00000004939)
Tetraodon	MODERN SPECIES	13	ndel1a (ENSTNIG00000011838)	armc7 (ENSTNIG00000011839)	acsf2 (ENSTNIG00000011841)	chad (ENSTNIG00000011840) #7	ENSTNIG00000011842 #8	SLC16A5 (ENSTNIG00000011843) #9	kctd2 (ENSTNIG00000011844) #10	tubgcp2 (ENSTNIG00000011845) #11	ADAM8 (ENSTNIG00000011846) #12	chuk (ENSTNIG00000011847) #13	ENSTNIG00000011848	zgc:92749 (ENSTNIG00000011849) #15	ENSTNIG00000011850 #17	ENSTNIG00000011851 #19	CRHR1 (ENSTNIG00000011852) #21	FAM171A2 (ENSTNIG00000011853) #22	grnb (ENSTNIG00000011854) #24	ENSTNIG00000011855 #25	ARF1 (ENSTNIG00000002029) #26	GRB7 (ENSTNIG00000011856) #27	SRCIN1 (ENSTNIG00000011857) #28	FMNL1 (ENSTNIG00000011858) #29	ccr10 (ENSTNIG00000011859) #30	ENSTNIG00000011860 #33	ENSTNIG00000011861 #34	ENSTNIG00000011862 #35	ENSTNIG00000011863 #36	ENSTNIG00000011864 #37	HID1 (ENSTNIG00000011865)	OTOP3 (ENSTNIG00000011866)	USH1G (ENSTNIG00000011867)
Eupecaria_A	ANCESTRAL SPECIES	22	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Ballan wrasse	MODERN SPECIES	363													ENSLBEG00000009585	ENSLBEG00000009564	CRHR1 (ENSLBEG00000009498) #21	FAM171A2 (ENSLBEG00000009452) #22	grnb (ENSLBEG00000009347) #24	ENSLBEG00000009296 #25	ARF1 (ENSLBEG00000009272) #26	GRB7 (ENSLBEG00000009245) #27	SRCIN1 (ENSLBEG00000009097) #28	ENSLBEG00000009023 #29	ccr10 (ENSLBEG00000008994) #30	ENSLBEG00000008961 #31	ENSLBEG00000008921 #32	ENSLBEG00000008893 #33	ENSLBEG00000008883 #34	ENSLBEG00000008854 #35	ENSLBEG00000008829 #36	ENSLBEG00000008802	cep131 (ENSLBEG00000008605)
Eupecaria_B	ANCESTRAL SPECIES	22	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Perciformes	ANCESTRAL SPECIES	9	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Cottioidei	ANCESTRAL SPECIES	12	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Stickleback	MODERN SPECIES	5	chad (ENSGACG00000004134) #7	ENSGACG00000004139 #8	SLC16A5 (ENSGACG00000004150) #9	kctd2 (ENSGACG00000004164) #10	tubgcp2 (ENSGACG00000004173) #11	ENSGACG00000004175 #12	chuk (ENSGACG00000004179) #13	ENSGACG00000004204	PSD (ENSGACG00000004207) #14	zgc:92749 (ENSGACG00000004214) #15	ENSGACG00000004220 #16	MAT1A (ENSGACG00000004225) #17	ENSGACG00000004243 #19	KANSL1 (ENSGACG00000004258) #20	CRHR1 (ENSGACG00000004272) #21	FAM171A2 (ENSGACG00000004288) #22	grnb (ENSGACG00000004305) #24	ENSGACG00000004334 #25	ENSGACG00000004343 #26	ENSGACG00000004358	GRB7 (ENSGACG00000004362) #27	ENSGACG00000004377 #28	FMNL1 (ENSGACG00000004388) #29	ccr10 (ENSGACG00000004402) #30	ENSGACG00000004411	cpped1 (ENSGACG00000004415)	ercc4 (ENSGACG00000004432)	MRTFB (ENSGACG00000004442)	ubald1b (ENSGACG00000004450)	foxj1b (ENSGACG00000004462)	ENSGACG00000004465
Lumpfish	MODERN SPECIES	10	nploc4 (ENSCLMG00005003122)	pde6gb (ENSCLMG00005003084)	OXLD1 (ENSCLMG00005003082)	gprc5c (ENSCLMG00005003074)	GPR142 (ENSCLMG00005003072)	ENSCLMG00005003068	ENSCLMG00005003059 #12	CHUK (ENSCLMG00005002340) #13	ENSCLMG00005002312 #14	ELOVL3 (ENSCLMG00005002309) #15	ENSCLMG00005002308 #16	ENSCLMG00005002306 #19	ENSCLMG00005002305	KANSL1 (ENSCLMG00005002304) #20	CRHR1 (ENSCLMG00005002253) #21	FAM171A2 (ENSCLMG00005002198) #22	ENSCLMG00005002197 #23	ENSCLMG00005002196 #24	ENSCLMG00005002195 #25	ENSCLMG00005002194 #26	GRB7 (ENSCLMG00005002193) #27	SRCIN1 (ENSCLMG00005002192) #28	ENSCLMG00005002182 ##29	ccr10 (ENSCLMG00005002178) #30	ENSCLMG00005002177 #31	ENSCLMG00005002174 #33	ENSCLMG00005002172 #34	ENSCLMG00005002170 #35	ENSCLMG00005002168 #36	ENSCLMG00005002164 #37	HID1 (ENSCLMG00005002159)
Perciformes_a	ANCESTRAL SPECIES	8	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c.d #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Pike perch	MODERN SPECIES	3	acsf2 (ENSSLUG00000004459)	ENSSLUG00000004114 #8	SLC16A5 (ENSSLUG00000004083) #9	kctd2 (ENSSLUG00000004071) #10	tubgcp2 (ENSSLUG00000004021) #11	ENSSLUG00000003974 #12	chuk (ENSSLUG00000003917) #13	PSD (ENSSLUG00000003861) #14	zgc:92749 (ENSSLUG00000003854) #15	ENSSLUG00000003849 #16	ENSSLUG00000003844	ENSSLUG00000003488 #17	ENSSLUG00000003352 #19	KANSL1 (ENSSLUG00000003306) #20	CRHR1 (ENSSLUG00000003239) #21	FAM171A2 (ENSSLUG00000003217) #22	grnb (ENSSLUG00000003177) #24	ENSSLUG00000020381 #26	GRB7 (ENSSLUG00000020310) #27	ENSSLUG00000020295	SRCIN1 (ENSSLUG00000020265) #28	FMNL1 (ENSSLUG00000019870) #29	ccr10 (ENSSLUG00000019813) #30	ENSSLUG00000019810 #31	ENSSLUG00000019805 #33	ENSSLUG00000019800	exoc7 (ENSSLUG00000019662)	tvp23b (ENSSLUG00000019620)	trim16 (ENSSLUG00000019618)	FADS6 (ENSSLUG00000019612)	USH1G (ENSSLUG00000019604)
Channel bull blenny	MODERN SPECIES	10	acsf2 (ENSCGOG00000018879)	SLC16A5 (ENSCGOG00000018870) #9	kctd2 (ENSCGOG00000018866) #10	tubgcp2 (ENSCGOG00000018863) #11	ENSCGOG00000018862 #12	chuk (ENSCGOG00000018218) #13	ENSCGOG00000017559 #14	zgc:92749 (ENSCGOG00000017529) #15	ENSCGOG00000017528 #16	ENSCGOG00000016722 #17	ghrhr2 (ENSCGOG00000016694) #18	ENSCGOG00000016670 #19	KANSL1 (ENSCGOG00000016664) #20	ENSCGOG00000016663	CRHR1 (ENSCGOG00000016622) #21	FAM171A2 (ENSCGOG00000016607) #22	grnb (ENSCGOG00000016598) #24	ENSCGOG00000016594 #25	ENSCGOG00000016540 #26	GRB7 (ENSCGOG00000016530) #27	SRCIN1 (ENSCGOG00000016523) #28	FMNL1 (ENSCGOG00000016150) #29	ccr10 (ENSCGOG00000016135) #30	ENSCGOG00000016131 #31	ENSCGOG00000016128 #32	ENSCGOG00000016125 #34	ENSCGOG00000016124 #35	ENSCGOG00000016123 #36	ENSCGOG00000016105 #37	HID1 (ENSCGOG00000015729)	OTOP3 (ENSCGOG00000015720)
Eupecaria_C	ANCESTRAL SPECIES	23	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Gilthead seabream	MODERN SPECIES	12	acsf2 (ENSSAUG00010025074)	ENSSAUG00010025044 #8	SLC16A5 (ENSSAUG00010025043) #9	kctd2 (ENSSAUG00010025042) #10	tubgcp2 (ENSSAUG00010025037) #11	ENSSAUG00010025033 #12	chuk (ENSSAUG00010025022) #13	ENSSAUG00010024473 #14	zgc:92749 (ENSSAUG00010024466) #15	ENSSAUG00010024465 #16	ENSSAUG00010024454 #17	ghrhr2 (ENSSAUG00010024453) #18	ENSSAUG00010024452 #19	KANSL1 (ENSSAUG00010024449) #20	CRHR1 (ENSSAUG00010023307) #21	FAM171A2 (ENSSAUG00010023288) #22	grnb (ENSSAUG00010023287) #24	ENSSAUG00010023286 #25	ENSSAUG00010023284 #26	GRB7 (ENSSAUG00010023281) #27	SRCIN1 (ENSSAUG00010023262) #28	FMNL1 (ENSSAUG00010021212) #29	ccr10 (ENSSAUG00010021155) #30	ENSSAUG00010021154 #31	ENSSAUG00010021152 #33	ENSSAUG00010021150 #34	ENSSAUG00010021148 #35	ENSSAUG00010021146 #36	ENSSAUG00010021142 #37	HID1 (ENSSAUG00010021127)	OTOP3 (ENSSAUG00010021125)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	27	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00940000164426.c
European seabass	MODERN SPECIES	11	ENSDLAG00005001660 #8	ENSDLAG00005001686 #9	kctd2 (ENSDLAG00005027650) #10	TUBGCP2 (ENSDLAG00005001711) #11	ENSDLAG00005001793 #12	ENSDLAG00005001836 #13	ENSDLAG00005001991 #14	ENSDLAG00005027391 #15	ENSDLAG00005002289 #20	ENSDLAG00005027928 #15	ENSDLAG00005002164 #16	ENSDLAG00005002171 #17	ENSDLAG00005002216 #18	ENSDLAG00005002239 #19	ENSDLAG00005002695 #21	ENSDLAG00005027422 #22	grnb (ENSDLAG00005005875) #24	ENSDLAG00005005934 #25	ENSDLAG00005029537 #26	ENSDLAG00005005980 #27	ENSDLAG00005006070 #28	ENSDLAG00005006315	ccr10 (ENSDLAG00005010705) #30	ENSDLAG00005010712 #31	ENSDLAG00005028436 #32	ENSDLAG00005026661 #33	ENSDLAG00005031195 #33	ENSDLAG00005010738 #34	ENSDLAG00005010744 #35	ENSDLAG00005027435 #36	ENSDLAG00005010755
Large yellow croaker	MODERN SPECIES	488	ENSLCRG00005017275	ENSLCRG00005017279	ENSLCRG00005017280	ENSLCRG00005017281	ENSLCRG00005017282	AATK (ENSLCRG00005017283)	BAIAP2 (ENSLCRG00005017285)	CHMP6 (ENSLCRG00005017289)	ENSLCRG00005017293	ELOVL6 (ENSLCRG00005017296) #15	ENSLCRG00005017298 #16	ENSLCRG00005017300 #17	ENSLCRG00005017314 #19	KANSL1 (ENSLCRG00005017316) #20	CRHR1 (ENSLCRG00005017330) #21	FAM171A2 (ENSLCRG00005019394) #22	grnb (ENSLCRG00005019396) #24	ENSLCRG00005019399 #25	ENSLCRG00005019402 #26	GRB7 (ENSLCRG00005019403) #27	SRCIN1 (ENSLCRG00005019405) #28	FMNL1 (ENSLCRG00005019414) #29	ccr10 (ENSLCRG00005019675) #30	ENSLCRG00005019676	ENSLCRG00005019677 #33	ENSLCRG00005019678 #34	ENSLCRG00005019679 #35	ENSLCRG00005019680 #36	ENSLCRG00005019681 #37	ENSLCRG00005019683 #33	SOST (ENSLCRG00005019685)
Percomorphaceae_D	ANCESTRAL SPECIES	13	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Anabantaria	ANCESTRAL SPECIES	18	ENSGT00940000164193	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Zig-zag eel	MODERN SPECIES	10	ENSMAMG00000007519	acsf2 (ENSMAMG00000007483)	chad (ENSMAMG00000007557) #7	ENSMAMG00000007570 #8	ENSMAMG00000007579 #9	kctd2 (ENSMAMG00000007590) #10	ENSMAMG00000007610 #11	ENSMAMG00000007782 #12	ENSMAMG00000007678 #13	ENSMAMG00000007831 #14	ENSMAMG00000007893 #15	ENSMAMG00000007906 #16	ENSMAMG00000007921 #19	ENSMAMG00000007954 #20	ENSMAMG00000007978 #21	ENSMAMG00000026862 #22	grnb (ENSMAMG00000008026) #24	ENSMAMG00000008064 #25	ENSMAMG00000008079 #26	ENSMAMG00000008095 #27	ENSMAMG00000008207 #29	ccr10 (ENSMAMG00000008230) #30	ENSMAMG00000028669 #31	ENSMAMG00000008251 #33	ENSMAMG00000025114 #34	ENSMAMG00000028265 #35	ENSMAMG00000026152 #36	ENSMAMG00000008281 #37	HID1 (ENSMAMG00000008310)	OTOP3 (ENSMAMG00000008355)	USH1G (ENSMAMG00000008365)
Anabantoidei	ANCESTRAL SPECIES	10	ENSGT00940000164193	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Siamese fighting fish	MODERN SPECIES	9	ENSBSLG00000016671	st6galnac1.1 (ENSBSLG00000016703)	trim8b (ENSBSLG00000016764)	arl3b (ENSBSLG00000016824)	sfxn2 (ENSBSLG00000016946)	timp2a (ENSBSLG00000017048)	cyth1b (ENSBSLG00000017091)	PGS1 (ENSBSLG00000017336)	SOCS3 (ENSBSLG00000017426)	tha1 (ENSBSLG00000017493)	eef2k (ENSBSLG00000017517)	polr3e (ENSBSLG00000017669)	ENSBSLG00000017708 #20	ENSBSLG00000017776 #19	ENSBSLG00000018322 #21	FAM171A2 (ENSBSLG00000020930) #22	grnb (ENSBSLG00000020965) #24	ENSBSLG00000021017 #25	ENSBSLG00000021056 #26	GRB7 (ENSBSLG00000021113) #27	ENSBSLG00000021224 #28	FMNL1 (ENSBSLG00000021383) #29	ccr10 (ENSBSLG00000021530) #30	ENSBSLG00000021536 #31	ENSBSLG00000021549 #33	ENSBSLG00000021554 #34	HID1 (ENSBSLG00000021562)	OTOP3 (ENSBSLG00000021736)	ENSBSLG00000021858	OTOP3 (ENSBSLG00000021880)	OTOP3 (ENSBSLG00000021971)
Climbing perch	MODERN SPECIES	10	armc7 (ENSATEG00000027928)	acsf2 (ENSATEG00000009182)	chad (ENSATEG00000009298) #7	ENSATEG00000009312 #8	ENSATEG00000009322 #9	kctd2 (ENSATEG00000025275) #10	ENSATEG00000009366 #11	ENSATEG00000009430 #12	ENSATEG00000009455 #13	ENSATEG00000009471 #14	ENSATEG00000009487 #15	ENSATEG00000009501 #16	ENSATEG00000009516 #19	ENSATEG00000009542 #20	ENSATEG00000009552 #21	ENSATEG00000026255 #22	grnb (ENSATEG00000009621) #24	ENSATEG00000009636 #25	ENSATEG00000009653 #26	ENSATEG00000009673 #27	ENSATEG00000009703 #28	ENSATEG00000009891 #29	ccr10 (ENSATEG00000009925) #30	ENSATEG00000029323 #31	ENSATEG00000009942 #32	ENSATEG00000009949 #33	ENSATEG00000028645 #34	ENSATEG00000009974 #35	ENSATEG00000009982 #36	ENSATEG00000009994 #37	HID1 (ENSATEG00000010006)
Carangaria	ANCESTRAL SPECIES	13	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Carangaria_A	ANCESTRAL SPECIES	5	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Seriola	ANCESTRAL SPECIES	1	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000155336.h.b	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Greater amberjack	MODERN SPECIES	27	SLC16A5 (ENSSDUG00000008557) #9	kctd2 (ENSSDUG00000008540) #10	tubgcp2 (ENSSDUG00000008508) #11	ENSSDUG00000008476 #12	chuk (ENSSDUG00000008446) #13	ENSSDUG00000008314 #14	ENSSDUG00000008278 #14	zgc:92749 (ENSSDUG00000008267) #15	ENSSDUG00000008257 #16	ENSSDUG00000008242 #17	ghrhr2 (ENSSDUG00000008218) #18	ENSSDUG00000008131 #19	KANSL1 (ENSSDUG00000008104) #20	CRHR1 (ENSSDUG00000008083) #21	ENSSDUG00000008071	FAM171A2 (ENSSDUG00000008062) #22	grnb (ENSSDUG00000007840) #24	ENSSDUG00000007780 #26	ENSSDUG00000005984	GRB7 (ENSSDUG00000005770) #27	SRCIN1 (ENSSDUG00000005747) #28	ccr10 (ENSSDUG00000005735) #30	FMNL1 (ENSSDUG00000005640) #29	ENSSDUG00000005625 #31	ENSSDUG00000005613 #32	ENSSDUG00000005604 #33	ENSSDUG00000005584 #34	ENSSDUG00000005589 #35	ENSSDUG00000005577 #36	ENSSDUG00000005549 #37	HID1 (ENSSDUG00000005474)
Yellowtail amberjack	MODERN SPECIES	2977															ENSSLDG00000021709 #21	FAM171A2 (ENSSLDG00000021697) #22	grnb (ENSSLDG00000021669) #24	ENSSLDG00000021651 #25	ENSSLDG00000021639 #26	ENSSLDG00000021632	GRB7 (ENSSLDG00000021609) #27	SRCIN1 (ENSSLDG00000021557) #28	FMNL1 (ENSSLDG00000021527) #29	ccr10 (ENSSLDG00000021518) #30	ENSSLDG00000021506 #31	ENSSLDG00000021500 #33	ENSSLDG00000021482 #32	ENSSLDG00000021474 #34	ENSSLDG00000021464 #35	ENSSLDG00000021460 #36	ENSSLDG00000021440 #37
Barramundi perch	MODERN SPECIES	143	ENSLCAG00010014830 #8	SLC16A5 (ENSLCAG00010014836) #9	kctd2 (ENSLCAG00010014844) #10	tubgcp2 (ENSLCAG00010014853) #11	ENSLCAG00010014860 #12	chuk (ENSLCAG00010014923) #13	ENSLCAG00010015175 #14	ENSLCAG00010015472 #15	ENSLCAG00010015474 #16	ENSLCAG00010015479 #17	ghrhr2 (ENSLCAG00010015485) #18	ENSLCAG00010015495	ENSLCAG00010015499 #19	KANSL1 (ENSLCAG00010015501) #20	CRHR1 (ENSLCAG00010015523) #21	FAM171A2 (ENSLCAG00010015569) #22	grnb (ENSLCAG00010015570) #24	ENSLCAG00010015573 #25	ENSLCAG00010015581 #26	GRB7 (ENSLCAG00010015593) #27	FMNL1 (ENSLCAG00010015674) #29	ccr10 (ENSLCAG00010015838) #30	ENSLCAG00010015842 #31	ENSLCAG00010015844 #32	ENSLCAG00010015847 #33	ENSLCAG00010015851 #34	ENSLCAG00010015852 #35	ENSLCAG00010015854 #36	ENSLCAG00010015860 #37	HID1 (ENSLCAG00010015876)	OTOP3 (ENSLCAG00010015902)
Pleuronectoidei	ANCESTRAL SPECIES	6	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Tongue sole	MODERN SPECIES	18	erbb2 (ENSCSEG00000009269)	pgap3 (ENSCSEG00000009322)	mylpfb (ENSCSEG00000009341)	ENSCSEG00000009358	ENSCSEG00000009366	pkmyt1 (ENSCSEG00000009368)	ENSCSEG00000009385	TGFB1I1 (ENSCSEG00000009399)	ENSCSEG00000009438	ENSCSEG00000009456 #16	MAT1A (ENSCSEG00000009470) #17	ghrhr2 (ENSCSEG00000009510) #18	ENSCSEG00000009557 #19	KANSL1 (ENSCSEG00000009618) #20	CRHR1 (ENSCSEG00000009657) #21	FAM171A2 (ENSCSEG00000009686) #22	grnb (ENSCSEG00000009698) #24	ENSCSEG00000009747 #26	GRB7 (ENSCSEG00000009771) #27	SRCIN1 (ENSCSEG00000009797) #28	entpd1 (ENSCSEG00000009884)	PTPRE (ENSCSEG00000009910)	CLRN3 (ENSCSEG00000010005)	foxi1 (ENSCSEG00000010013)	dock1 (ENSCSEG00000010022)	INSYN2A (ENSCSEG00000010108)	ADAM12 (ENSCSEG00000010171)	bccip (ENSCSEG00000010665)	UROS (ENSCSEG00000010684)	mmp21 (ENSCSEG00000010781)	CTBP2 (ENSCSEG00000010803)
Turbot	MODERN SPECIES	9	acsf2 (ENSSMAG00000009930)	chad (ENSSMAG00000009975) #7	ENSSMAG00000009981 #8	ENSSMAG00000009996 #9	kctd2 (ENSSMAG00000010010) #10	ENSSMAG00000010024 #11	ENSSMAG00000010145 #12	ENSSMAG00000010179 #13	ENSSMAG00000010277 #14	ELOVL6 (ENSSMAG00000032915) #15	ENSSMAG00000010307 #16	ENSSMAG00000010343 #17	ENSSMAG00000010405 #19	ENSSMAG00000010492 #20	ENSSMAG00000010506 #21	ENSSMAG00000026589 #22	ENSSMAG00000024219 #23	grnb (ENSSMAG00000010720) #24	ENSSMAG00000010770 #26	ENSSMAG00000010785 #27	ENSSMAG00000026771 #28	ENSSMAG00000010833 #29	ccr10 (ENSSMAG00000010897) #30	ENSSMAG00000033593 #31	ENSSMAG00000010919 #32	ENSSMAG00000010925 #33	ENSSMAG00000027442 #34	ENSSMAG00000027815 #35	ENSSMAG00000010947 #36	ENSSMAG00000010952 #37	HID1 (ENSSMAG00000010985)
Ovalentaria	ANCESTRAL SPECIES	13	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.b ##24	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Atherinomorphae	ANCESTRAL SPECIES	10	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	13	ENSGT00940000164193	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Aplocheiloidei	ANCESTRAL SPECIES	4	ENSGT00940000164193	ENSGT00940000161826.C #7	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000164426.c	ENSGT00390000003070.a.b.b	ENSGT00390000017548.b.b
Mangrove rivulus	MODERN SPECIES	110															ENSKMAG00000014465	FAM171A2 (ENSKMAG00000014446) #22	ENSKMAG00000014430	FAM135B (ENSKMAG00000014389)	ENSKMAG00000014343	ENSKMAG00000014312	kcnk9 (ENSKMAG00000014301)	capns1b (ENSKMAG00000014268)	zgc:153990 (ENSKMAG00000014235)	nova1 (ENSKMAG00000014225)	kptn (ENSKMAG00000014205)	crx (ENSKMAG00000014191)	h3f3c (ENSKMAG00000014172)	ENSKMAG00000014151	ENSKMAG00000014134	hspa8b (ENSKMAG00000014084)	lim2.3 (ENSKMAG00000014049)
Turquoise killifish	MODERN SPECIES	1621	gprc5c (ENSNFUG00015025058)	GPR142 (ENSNFUG00015025056)	BTBD17 (ENSNFUG00015025055)	map2k6 (ENSNFUG00015025054)	ENSNFUG00015025052	KCNJ2 (ENSNFUG00015025050)	KCNJ16 (ENSNFUG00015025047)	GALR3 (ENSNFUG00015025044)	EXOC7 (ENSNFUG00015024816)	tvp23b (ENSNFUG00015024728)	trim16 (ENSNFUG00015024725)	ENSNFUG00015024722 #16	ENSNFUG00015024713 #19	KANSL1 (ENSNFUG00015024706) #20	CRHR1 (ENSNFUG00015024657) #21	FAM171A2 (ENSNFUG00015024640) #22	ENSNFUG00015024606 #24	ENSNFUG00015024580 #25	ARF1L (ENSNFUG00015024559) #26	GRB7 (ENSNFUG00015024554) #27	ENSNFUG00015024321 #29	SRCIN1 (ENSNFUG00015024298) #28	ENSNFUG00015024293	ENSNFUG00015024291	ccr10 (ENSNFUG00015024290) #30	ENSNFUG00015024288 #31	Nfu_g_1_000811 (ENSNFUG00015024287) #33	Nfu_g_1_000857 (ENSNFUG00015024285) #34	ENSNFUG00015024284 #35	ENSNFUG00015024281 #36	HID1 (ENSNFUG00015024250)
Cyprinodontoidei	ANCESTRAL SPECIES	17	ENSGT00940000157054.c.b	ENSGT00940000167489	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303.f	ENSGT00940000155310.b	ENSGT00390000001094	ENSGT01030000234528.A.a.b	ENSGT00530000066456	ENSGT00940000160819	ENSGT00390000012745	ENSGT00940000165932	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Poeciliinae	ANCESTRAL SPECIES	10	ENSGT00940000157054.c.b	ENSGT00940000167489	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303.f	ENSGT00940000155310.b	ENSGT00390000001094	ENSGT01030000234528.A.a.b	ENSGT00530000066456	ENSGT00940000160819	ENSGT00390000012745	ENSGT00940000165932	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Poecilia	ANCESTRAL SPECIES	15	ENSGT00940000157054.c.b	ENSGT00940000167489	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303.f	ENSGT00940000155310.b	ENSGT00390000001094	ENSGT01030000234528.A.a.b	ENSGT00530000066456	ENSGT00940000160819	ENSGT00390000012745	ENSGT00940000165932	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00980000200843 #23	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
NAME_6	ANCESTRAL SPECIES		ENSGT00940000157054.c.b	ENSGT00940000167489	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303.f	ENSGT00940000155310.b	ENSGT00390000001094	ENSGT01030000234528.A.a.b	ENSGT00530000066456	ENSGT00940000160819	ENSGT00390000012745	ENSGT00940000165932	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00390000017548.b.b
Amazon molly	MODERN SPECIES	259	gna13a (ENSPFOG00000014170)	ENSPFOG00000014162	BICRAL (ENSPFOG00000014135)	tbcc (ENSPFOG00000020445)	prph2a (ENSPFOG00000014115)	qki2 (ENSPFOG00000014078)	timm23a (ENSPFOG00000014021)	zgc:112285 (ENSPFOG00000014003)	ENSPFOG00000020444	ENSPFOG00000013989	nat9 (ENSPFOG00000013945)	lrrc59 (ENSPFOG00000013902)	ENSPFOG00000013872 #19	KANSL1 (ENSPFOG00000013694) #20	ENSPFOG00000013545 #21	FAM171A2 (ENSPFOG00000013489) #22	grnb (ENSPFOG00000013384) #24	ENSPFOG00000013357 #25	ENSPFOG00000013339 #26	GRB7 (ENSPFOG00000013244) #27	ENSPFOG00000023417	SRCIN1 (ENSPFOG00000013080) #28	FMNL1 (ENSPFOG00000012821) #29	ccr10 (ENSPFOG00000020443) #30	ENSPFOG00000012809 #31	ENSPFOG00000020442 #33	ENSPFOG00000012798 #35	ENSPFOG00000012802 #34	ENSPFOG00000012797 #36	ENSPFOG00000012721 #37	HID1 (ENSPFOG00000012585)
Sailfin molly	MODERN SPECIES	84	rgs9b (ENSPLAG00000020258)	gna13a (ENSPLAG00000020281)	ENSPLAG00000020301	BICRAL (ENSPLAG00000020308)	tbcc (ENSPLAG00000020320)	prph2a (ENSPLAG00000020330)	qki2 (ENSPLAG00000020354)	timm23a (ENSPLAG00000020382)	zgc:112285 (ENSPLAG00000020400)	ENSPLAG00000020430	nat9 (ENSPLAG00000020495)	lrrc59 (ENSPLAG00000020505)	ENSPLAG00000020541 #19	KANSL1 (ENSPLAG00000020554) #20	ENSPLAG00000020586 #21	FAM171A2 (ENSPLAG00000020597) #22	grnb (ENSPLAG00000020671) #24	ENSPLAG00000020696 #26	GRB7 (ENSPLAG00000020703) #27	srcin1b (ENSPLAG00000020721) #28
Guppy	MODERN SPECIES	449	GRIN2C (ENSPREG00000009399)	rgs9b (ENSPREG00000009308)	GNA13 (ENSPREG00000009253)	BICRAL (ENSPREG00000009220)	tbcc (ENSPREG00000009205)	prph2a (ENSPREG00000009197)	qki2 (ENSPREG00000009154)	timm23a (ENSPREG00000009107)	zgc:112285 (ENSPREG00000009082)	ENSPREG00000009039	nat9 (ENSPREG00000009007)	lrrc59 (ENSPREG00000008989)	ENSPREG00000008838 #19	KANSL1 (ENSPREG00000008762) #20	ENSPREG00000008701 #21	FAM171A2 (ENSPREG00000008687) #22	ENSPREG00000008677 #23	ENSPREG00000008670 #24	ENSPREG00000008653 #25	ENSPREG00000008632 #26	GRB7 (ENSPREG00000008605) #27	ENSPREG00000008564 #28	ENSPREG00000008532 #29	ccr10 (ENSPREG00000008518) #30	ENSPREG00000008505 #31	ENSPREG00000008499 #33	ENSPREG00000008486 #34	ENSPREG00000008477 #35	ENSPREG00000008465 #36	ENSPREG00000008445	HID1 (ENSPREG00000008380)
Platyfish	MODERN SPECIES	1	gna13a (ENSXMAG00000017092)	ENSXMAG00000028831	BICRAL (ENSXMAG00000017077)	tbcc (ENSXMAG00000019868)	prph2a (ENSXMAG00000017072)	qki2 (ENSXMAG00000017056)	timm23a (ENSXMAG00000017027)	zgc:112285 (ENSXMAG00000029160)	ENSXMAG00000017022	nat9 (ENSXMAG00000017020)	lrrc59 (ENSXMAG00000017011)	ENSXMAG00000017005 #19	KANSL1 (ENSXMAG00000016995) #20	ENSXMAG00000022679	CRHR1 (ENSXMAG00000016969) #21	FAM171A2 (ENSXMAG00000016963) #22	grnb (ENSXMAG00000016952) #24	ENSXMAG00000016947 #25	ENSXMAG00000016938 #26	GRB7 (ENSXMAG00000016919) #27	SRCIN1 (ENSXMAG00000016908) #28	FMNL1 (ENSXMAG00000016886) #29	ccr10 (ENSXMAG00000016885) #30	ENSXMAG00000023326 #31	ENSXMAG00000019865 #33	ENSXMAG00000016880 #34	ENSXMAG00000024696 #35	ENSXMAG00000027937 #36	ENSXMAG00000016862 #37	HID1 (ENSXMAG00000016830)	USH1G (ENSXMAG00000016823)
NAME_4	ANCESTRAL SPECIES	22	ENSGT00940000178967	ENSGT00940000157054.c.b	ENSGT00940000167489	ENSGT00940000159766	ENSGT00940000162058	ENSGT00940000157303.f	ENSGT00940000155310.b	ENSGT00390000001094	ENSGT01030000234528.A.a.b	ENSGT00940000160819	ENSGT00390000012745	ENSGT00940000165932	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00390000017548.b.b
Mummichog	MODERN SPECIES	2198	rgs9b (ENSFHEG00000009313)	gna13a (ENSFHEG00000009329)	ENSFHEG00000000798	BICRAL (ENSFHEG00000009344)	tbcc (ENSFHEG00000009360)	prph2a (ENSFHEG00000009400)	qki2 (ENSFHEG00000009423)	timm23a (ENSFHEG00000009448)	zgc:112285 (ENSFHEG00000009471)	ENSFHEG00000009506	nat9 (ENSFHEG00000009523)	lrrc59 (ENSFHEG00000009536)	ENSFHEG00000009597 #19	KANSL1 (ENSFHEG00000009624) #20	ENSFHEG00000010071 #21	FAM171A2 (ENSFHEG00000010187) #22	grnb (ENSFHEG00000010211) #24	GRB7 (ENSFHEG00000010225) #27	ENSFHEG00000010448 #28	ENSFHEG00000010491 #29	ccr10 (ENSFHEG00000010513) #30	ENSFHEG00000010520 #34	ENSFHEG00000010539 #35	ENSFHEG00000010542 #36	ENSFHEG00000000241 #37	HID1 (ENSFHEG00000010668)	USH1G (ENSFHEG00000010681)	FADS6 (ENSFHEG00000010703)	trim16 (ENSFHEG00000010712)	tvp23b (ENSFHEG00000010736)	exoc7 (ENSFHEG00000010965)
Sheepshead minnow	MODERN SPECIES	567	ENSCVAG00000006146	ercc4 (ENSCVAG00000006171)	cpped1 (ENSCVAG00000006186)	ENSCVAG00000006215	ubald1b (ENSCVAG00000006223)	foxj1b (ENSCVAG00000006225)	ENSCVAG00000006259	hbae4 (ENSCVAG00000006268)	ENSCVAG00000006305	ENSCVAG00000006378	cep131 (ENSCVAG00000006408)	ENSCVAG00000006447	ENSCVAG00000006460	ENSCVAG00000006491	CRHR1 (ENSCVAG00000006507) #21	FAM171A2 (ENSCVAG00000006523) #22	grnb (ENSCVAG00000006563) #24	ENSCVAG00000006578 #25	ENSCVAG00000000745 #26
Oryzias	ANCESTRAL SPECIES	11	ENSGT00940000164435	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a #22	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00940000164426.c
Oryzias_b	ANCESTRAL SPECIES	45	ENSGT00940000161748	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a #22	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000164426.c	ENSGT00390000003070.a.b.b
Javanese ricefish	MODERN SPECIES	10	exoc6 (ENSOJAG00000007409)	HHEX (ENSOJAG00000007367)	trub1 (ENSOJAG00000007327)	LRRC45 (ENSOJAG00000006981)	rac3b (ENSOJAG00000006807)	dcxr (ENSOJAG00000006784)	rfng (ENSOJAG00000006612)	atp6v0a1b (ENSOJAG00000006270)	cavin1b (ENSOJAG00000006202)	stat5b (ENSOJAG00000005822)	NAGLU (ENSOJAG00000005667)	ipmkb (ENSOJAG00000005644)	tfam (ENSOJAG00000005636)	ENSOJAG00000004340	ENSOJAG00000004311	FAM171A2 (ENSOJAG00000004291) #22	ENSOJAG00000004262	grnb (ENSOJAG00000003985) #24	ENSOJAG00000003945 #25	ENSOJAG00000003908 #26	GRB7 (ENSOJAG00000003682) #27	srcin1b (ENSOJAG00000003625) #28	ENSOJAG00000003537 #28	FMNL1 (ENSOJAG00000022422) #29	ccr10 (ENSOJAG00000022386) #30	ENSOJAG00000022376 #31	ENSOJAG00000022373 #33	ENSOJAG00000022368 #34	ENSOJAG00000022366 #35	ENSOJAG00000022363 #36	ENSOJAG00000022331 #24
Indian medaka	MODERN SPECIES	17	ENSOMEG00000002975 #15	ENSOMEG00000002967 #16	ENSOMEG00000002953 #17	ENSOMEG00000002899 #19	KANSL1 (ENSOMEG00000002820) #20	CRHR1 (ENSOMEG00000002806) #21	ENSOMEG00000002789	mettl9 (ENSOMEG00000002750)	kdelr2b (ENSOMEG00000002743)	ENSOMEG00000002735	wdr45b (ENSOMEG00000002726)	foxk2a (ENSOMEG00000002711)	mtr (ENSOMEG00000002695)	ENSOMEG00000002662	ENSOMEG00000002604	FAM171A2 (ENSOMEG00000002596) #22	grnb (ENSOMEG00000002589) #24	ENSOMEG00000002568 #25	ENSOMEG00000002559 #26	GRB7 (ENSOMEG00000002544) #27	ENSOMEG00000002509	vps8 (ENSOMEG00000002421)	ENSOMEG00000002336	PTS (ENSOMEG00000022440)	ENSOMEG00000022418	gas7a (ENSOMEG00000022385)	RSPH1 (ENSOMEG00000022351)	adprm (ENSOMEG00000022302)	map2k4b (ENSOMEG00000022222)	MYOCD (ENSOMEG00000022092)	ENSOMEG00000021972
Oryzias_a	ANCESTRAL SPECIES	49	ENSGT00940000158962	ENSGT00940000154003.B.f	ENSGT00940000153500.a.b.e.b.d	ENSGT00940000154873	ENSGT00940000160801	ENSGT00950000182881.a.a.b.i.a	ENSGT00950000182910.b.g.a	ENSGT00950000182910.b.h	ENSGT01080000257420.C.b.b.c.b	ENSGT00390000005900	ENSGT00940000155309	ENSGT00440000039001	ENSGT00420000029824	ENSGT00940000153713.A	ENSGT00940000154610.e.a	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000176945
Japanese Medaka HdrR	MODERN SPECIES	10	LRRC45 (ENSORLG00000002696)	rac3b (ENSORLG00000002677)	ENSORLG00000028041	dcxr (ENSORLG00000002658)	rfng (ENSORLG00000014473)	atp6v0a1b (ENSORLG00000014447)	cavin1b (ENSORLG00000014348)	ENSORLG00000028175	ENSORLG00000014335	NAGLU (ENSORLG00000025072)	ipmkb (ENSORLG00000021897)	tfam (ENSORLG00000026096)	mtr (ENSORLG00000014271)	ENSORLG00000014229	ENSORLG00000014180	FAM171A2 (ENSORLG00000014147) #22	grnb (ENSORLG00000014130) #24	ENSORLG00000014119 #25	ENSORLG00000029190 #26	GRB7 (ENSORLG00000014102) #27	ENSORLG00000026400	ENSORLG00000014080 #28	ENSORLG00000014055	ccr10 (ENSORLG00000014046) #30	ENSORLG00000021967 #31	ENSORLG00000014037 #33	ENSORLG00000014029 #34	ENSORLG00000014023 #35	ENSORLG00000014020 #36	plaub (ENSORLG00000014015)	HID1 (ENSORLG00000013960)
Chinese medaka	MODERN SPECIES	4201																ENSOSIG00000013770 #22
Ovalentaria_B	ANCESTRAL SPECIES	21	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.b ##24	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Pomacentridae	ANCESTRAL SPECIES	41	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00510000050089.a.b.d	ENSGT00730000111991	ENSGT00940000176991	ENSGT00940000167352	ENSGT00940000177267	ENSGT00940000171531	ENSGT00940000177233	ENSGT00940000165336.a.a.a.g	ENSGT00950000183002.C.c.b	ENSGT00940000154078.a.a.a	ENSGT00390000004495	ENSGT00390000015375
Pomacentridae_A	ANCESTRAL SPECIES	39	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00510000050089.a.b.d	ENSGT00730000111991	ENSGT00940000176991	ENSGT00940000167352	ENSGT00940000171531	ENSGT00940000177233	ENSGT00940000165336.a.a.a.g	ENSGT00950000183002.C.c.b	ENSGT00940000154078.a.a.a	ENSGT00390000004495	ENSGT00390000015375	ENSGT00940000157186.c
Amphiprion	ANCESTRAL SPECIES	59	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000180881	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00510000050089.a.b.d	ENSGT00730000111991	ENSGT00940000176991	ENSGT00940000167352	ENSGT00940000171531	ENSGT00940000177233	ENSGT00940000165336.a.a.a.g	ENSGT00950000183002.C.c.b	ENSGT00940000154078.a.a.a	ENSGT00390000004495	ENSGT00390000015375	ENSGT00940000157186.c
Clown anemonefish	MODERN SPECIES	1101																FAM171A2 (ENSAOCG00000004432) #22	grnb (ENSAOCG00000004418) #24	ENSAOCG00000004396 #25	ENSAOCG00000001809 #26	ENSAOCG00000004369	ENSAOCG00000002281	ENSAOCG00000004329	scn4aa (ENSAOCG00000004120)	ENSAOCG00000003514	ENSAOCG00000003510	ENSAOCG00000003504	selenou1b (ENSAOCG00000003495)	ENSAOCG00000003488	fam172a (ENSAOCG00000000092)	ENSAOCG00000003471	ENSAOCG00000003463
Orange clownfish	MODERN SPECIES	10	SLC16A5 (ENSAPEG00000004055) #9	ENSAPEG00000004039	kctd2 (ENSAPEG00000004002) #10	tubgcp2 (ENSAPEG00000003938) #11	ENSAPEG00000003909 #12	chuk (ENSAPEG00000003851) #13	PSD (ENSAPEG00000003822) #14	zgc:92749 (ENSAPEG00000003813) #15	ENSAPEG00000003796 #16	ENSAPEG00000003760 #17	ghrhr2 (ENSAPEG00000003716) #18	ENSAPEG00000003673 #19	KANSL1 (ENSAPEG00000003654) #20	ENSAPEG00000003591	CRHR1 (ENSAPEG00000003526) #21	FAM171A2 (ENSAPEG00000003506) #22	grnb (ENSAPEG00000003470) #24	ENSAPEG00000003398 #25	ENSAPEG00000003390 #26	ENSAPEG00000003238	ENSAPEG00000003080	ENSAPEG00000003069	ENSAPEG00000003064	scn4aa (ENSAPEG00000002925)	ENSAPEG00000002896	ENSAPEG00000002893	selenou1b (ENSAPEG00000002848)	PDZD7 (ENSAPEG00000002780)	LZTS2 (ENSAPEG00000002760)	twnk (ENSAPEG00000002711)	mrpl43 (ENSAPEG00000002700)
Spiny chromis	MODERN SPECIES	886												ENSAPOG00000021397 #19	KANSL1 (ENSAPOG00000021201) #20	ENSAPOG00000021170	CRHR1 (ENSAPOG00000021142) #21	FAM171A2 (ENSAPOG00000021069) #22	grnb (ENSAPOG00000021060) #24	ENSAPOG00000021053 #26	ENSAPOG00000021026	ENSAPOG00000020814	scn4aa (ENSAPOG00000020794)	ENSAPOG00000000588	ENSAPOG00000020656	selenou1b (ENSAPOG00000020654)	PDZD7 (ENSAPOG00000020616)	LZTS2 (ENSAPOG00000020543)	twnk (ENSAPOG00000020517)	mrpl43 (ENSAPOG00000020476)
Bicolor damselfish	MODERN SPECIES	1516																FAM171A2 (ENSSPAG00000007547) #22	grnb (ENSSPAG00000007502) #24	ENSSPAG00000007474 #25	ENSSPAG00000007465 #26	ENSSPAG00000007448	ENSSPAG00000007362	ENSSPAG00000007330	scn4aa (ENSSPAG00000007270)	ENSSPAG00000007245	selenou1b (ENSSPAG00000007195)	PDZD7 (ENSSPAG00000007109)
Cichlidae	ANCESTRAL SPECIES	15	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.b ##24	ENSGT00980000201950	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37
Pseudocrenilabrinae	ANCESTRAL SPECIES	9	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00950000182996.b.b.d.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	7	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00950000182996.b.b.d.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b	ENSGT00940000160638
Haplochromini	ANCESTRAL SPECIES	17	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00950000182996.b.b.d.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400.c #33	ENSGT00940000165400.d #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Burton s mouthbrooder	MODERN SPECIES	274	chad (ENSHBUG00000004113) #7	ENSHBUG00000004091 #8	SLC16A5 (ENSHBUG00000004078) #9	kctd2 (ENSHBUG00000004065) #10	tubgcp2 (ENSHBUG00000004036) #11	ENSHBUG00000003987 #12	chuk (ENSHBUG00000003941) #13	ENSHBUG00000003897 #14	zgc:92749 (ENSHBUG00000003868) #15	ENSHBUG00000003844 #16	ENSHBUG00000000955 #17	ENSHBUG00000003789	ENSHBUG00000003772 #19	KANSL1 (ENSHBUG00000003739) #20	ENSHBUG00000003724 #21	FAM171A2 (ENSHBUG00000003681) #22	grnb (ENSHBUG00000003674) #24	ENSHBUG00000003654 #26	GRB7 (ENSHBUG00000003637) #27	SRCIN1 (ENSHBUG00000003567) #28	FMNL1 (ENSHBUG00000000076) #29	ccr10 (ENSHBUG00000003468) #30	ENSHBUG00000003463 #31	ENSHBUG00000003450	ENSHBUG00000003437 #33	ENSHBUG00000003432 #34	ENSHBUG00000003428 #35	ENSHBUG00000003415 #36	ENSHBUG00000003410 #37	HID1 (ENSHBUG00000003380)	OTOP3 (ENSHBUG00000003267)
Haplochromini_A	ANCESTRAL SPECIES	16	ENSGT00940000161826.C #7	ENSGT00940000156830.a	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400.c #33	ENSGT00940000165400.d #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Haplochromini_B	ANCESTRAL SPECIES	15	ENSGT00940000156830.a	ENSGT00940000161826.C #7	ENSGT00940000166090 #8	ENSGT00940000159666.c #9	ENSGT00940000158336 #10	ENSGT00940000156697 #11	ENSGT00940000158585.g.b #12	ENSGT00950000182937.A.a.o #13	ENSGT00940000155061.a.b.k.b #14	ENSGT01050000244965.a.a #15	ENSGT01030000234578.A.b.a.a.a.a.a #16	ENSGT00950000183185.c.a.b.a.b #17	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00940000158410.g.b #21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT00940000165400.c #33	ENSGT00940000165400.d #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000164286.j.a.a.a #35	ENSGT00940000164286.j.a.b.a #36	ENSGT00940000159778.b #37	ENSGT00390000003070.a.b.b
Eastern happy	MODERN SPECIES	20	ENSACLG00000023109 #8	SLC16A5 (ENSACLG00000023090) #9	kctd2 (ENSACLG00000023069) #10	tubgcp2 (ENSACLG00000023020) #11	ENSACLG00000023000 #12	chuk (ENSACLG00000022851) #13	ENSACLG00000022794 #14	zgc:92749 (ENSACLG00000022773) #15	ENSACLG00000022732 #16	ENSACLG00000022689 #17	ENSACLG00000022670	ENSACLG00000022654	ENSACLG00000022424 #19	KANSL1 (ENSACLG00000022326) #20	CRHR1 (ENSACLG00000022257) #21	FAM171A2 (ENSACLG00000022238) #22	grnb (ENSACLG00000022188) #24	ENSACLG00000022154 #25	ENSACLG00000022124 #26	GRB7 (ENSACLG00000022097) #27	ENSACLG00000022094	SRCIN1 (ENSACLG00000022001) #28	FMNL1 (ENSACLG00000021859) #29	ccr10 (ENSACLG00000021839) #30	ENSACLG00000021823 #31	ENSACLG00000021786 #33	ENSACLG00000021778 #33	ENSACLG00000021771 #34	ENSACLG00000021762 #35	ENSACLG00000021755 #36	ENSACLG00000021716 #37
Zebra mbuna	MODERN SPECIES	1111	acsf2 (ENSMZEG00005008586)	chad (ENSMZEG00005008601) #7	ENSMZEG00005008608 #8	SLC16A5 (ENSMZEG00005008629) #9	kctd2 (ENSMZEG00005008638) #10	tubgcp2 (ENSMZEG00005008651) #11	ENSMZEG00005008699 #12	chuk (ENSMZEG00005008726) #13	ENSMZEG00005008792 #14	zgc:92749 (ENSMZEG00005008820) #15	ENSMZEG00005008836 #16	ENSMZEG00005008856 #17	ENSMZEG00005008879 #19	KANSL1 (ENSMZEG00005008930) #20	ENSMZEG00005008950 #21	FAM171A2 (ENSMZEG00005008985) #22	grnb (ENSMZEG00005009003) #24	ENSMZEG00005009018 #25	ENSMZEG00005009037 #26	GRB7 (ENSMZEG00005009054) #27	ENSMZEG00005009102 #28	FMNL1 (ENSMZEG00005009159) #29	ccr10 (ENSMZEG00005009201) #30	ENSMZEG00005009207 #31	ENSMZEG00005009220 #33	ENSMZEG00005009244 #33	ENSMZEG00005009251 #34	ENSMZEG00005009253 #35	ENSMZEG00005009258 #36	ENSMZEG00005009265 #37	HID1 (ENSMZEG00005009279)
P. nyererei	MODERN SPECIES	312	chad (ENSPNYG00000000417) #7	acsf2 (ENSPNYG00000000376)	ENSPNYG00000000358 #8	SLC16A5 (ENSPNYG00000000355) #9	ENSPNYG00000000350 #10	tubgcp2 (ENSPNYG00000000335) #11	ENSPNYG00000020916 #12	chuk (ENSPNYG00000020836) #13	ENSPNYG00000020806 #14	zgc:92749 (ENSPNYG00000020784) #15	ENSPNYG00000020758 #16	ENSPNYG00000020735 #17	ENSPNYG00000020674 #19	KANSL1 (ENSPNYG00000020644) #20	CRHR1 (ENSPNYG00000020616) #21	FAM171A2 (ENSPNYG00000020605) #22	grnb (ENSPNYG00000020588) #24	ENSPNYG00000020567 #25	ENSPNYG00000020555 #26	GRB7 (ENSPNYG00000020529) #27	SRCIN1 (ENSPNYG00000020443) #28	ENSPNYG00000020402 #29	ccr10 (ENSPNYG00000020391) #30	ENSPNYG00000020379 #31	ENSPNYG00000020368 #33	ENSPNYG00000020362 #35	ENSPNYG00000020356 #36	ENSPNYG00000020330	HID1 (ENSPNYG00000020281)	OTOP3 (ENSPNYG00000020253)	USH1G (ENSPNYG00000020235)
Lyretail cichlid	MODERN SPECIES	317	ENSNBRG00000023620	ENSNBRG00000023626 #8	SLC16A5 (ENSNBRG00000023632) #9	kctd2 (ENSNBRG00000023638) #10	tubgcp2 (ENSNBRG00000023649) #11	ADAM8 (ENSNBRG00000023680) #12	chuk (ENSNBRG00000023728) #13	ENSNBRG00000023736 #14	ENSNBRG00000023743 #14	ENSNBRG00000023749 #15	ENSNBRG00000023759 #16	ENSNBRG00000023760 #17	ENSNBRG00000023768 #19	KANSL1 (ENSNBRG00000023776) #20	ENSNBRG00000023786 #21	FAM171A2 (ENSNBRG00000023792) #22	ENSNBRG00000023796 ##24	ENSNBRG00000023803 #26	GRB7 (ENSNBRG00000023809) #27	srcin1b (ENSNBRG00000023816) #28	ENSNBRG00000023824 #29	ccr10 (ENSNBRG00000023831) #30	ENSNBRG00000023835 #31	ENSNBRG00000023838 #33	ENSNBRG00000023841 ##34	ENSNBRG00000023843 #35	ENSNBRG00000023850 #37	ENSNBRG00000023855	USH1G (ENSNBRG00000023861)	FADS6 (ENSNBRG00000023864)	ENSNBRG00000023871
Nile tilapia	MODERN SPECIES	20	acsf2 (ENSONIG00000018174)	ENSONIG00000018168 #8	SLC16A5 (ENSONIG00000032659) #9	kctd2 (ENSONIG00000018163) #10	tubgcp2 (ENSONIG00000018159) #11	ENSONIG00000018157 #12	chuk (ENSONIG00000018146) #13	ENSONIG00000018143 #14	zgc:92749 (ENSONIG00000039199) #15	ENSONIG00000035850 #16	ENSONIG00000040716	ENSONIG00000018138 #17	ENSONIG00000018136 #19	KANSL1 (ENSONIG00000018135) #20	CRHR1 (ENSONIG00000038106) #21	FAM171A2 (ENSONIG00000018126) #22	grnb (ENSONIG00000018119) #24	ENSONIG00000018118	ENSONIG00000018116	ENSONIG00000035868 #25	ENSONIG00000041559 #26	GRB7 (ENSONIG00000018112) #27	SRCIN1 (ENSONIG00000018109) #28	FMNL1 (ENSONIG00000018104) #29	ccr10 (ENSONIG00000038579) #30	ENSONIG00000032308	ENSONIG00000033191 #33	ENSONIG00000043195 #33	ENSONIG00000018100 #34	ENSONIG00000018099 #35	ENSONIG00000029134 #36
Midas cichlid	MODERN SPECIES	358	ENSACIG00000013470	ENSACIG00000013462	tubgcp2 (ENSACIG00000013433) #11	ENSACIG00000013380 #12	ENSACIG00000013369	chuk (ENSACIG00000013304) #13	ENSACIG00000013285 #14	ENSACIG00000013263 #14	zgc:92749 (ENSACIG00000013253) #15	ENSACIG00000013239 #16	ENSACIG00000013217 #17	ghrhr2 (ENSACIG00000013192) #18	ENSACIG00000013174 #19	KANSL1 (ENSACIG00000013150) #20	CRHR1 (ENSACIG00000013100) #21	FAM171A2 (ENSACIG00000013076) #22	ENSACIG00000013067	grnb (ENSACIG00000012938) #24	ENSACIG00000012912 #26	GRB7 (ENSACIG00000012887) #27	SRCIN1 (ENSACIG00000012804) #28	ENSACIG00000012765 #29	ccr10 (ENSACIG00000012757) #30	ENSACIG00000012749 #31	ENSACIG00000012739 #33	ENSACIG00000012732 #33	ENSACIG00000012712 #34	ENSACIG00000012706 #35	ENSACIG00000012696 #36	ENSACIG00000012671	HID1 (ENSACIG00000012619)
Tiger tail seahorse	MODERN SPECIES	235	ENSHCOG00000017536	asah2 (ENSHCOG00000017625)	ENSHCOG00000017655	A1CF (ENSHCOG00000017669)	chad (ENSHCOG00000017719) #7	acsf2 (ENSHCOG00000017730)	ENSHCOG00000017754 #8	SLC16A5 (ENSHCOG00000017763) #9	kctd2 (ENSHCOG00000017772) #10	tubgcp2 (ENSHCOG00000017851) #11	chuk (ENSHCOG00000017888) #13	ENSHCOG00000017900 #14	ENSHCOG00000017968 #19	KANSL1 (ENSHCOG00000017990) #20	CRHR1 (ENSHCOG00000018007) #21	FAM171A2 (ENSHCOG00000018053) #22	grnb (ENSHCOG00000018097) #24	ENSHCOG00000018115 #25	ARF1 (ENSHCOG00000018128) ##26	GRB7 (ENSHCOG00000018144) #27	srcin1b (ENSHCOG00000018158) #28	ccr10 (ENSHCOG00000018169) #30	ENSHCOG00000018174	ENSHCOG00000018181 #35	ENSHCOG00000018211 #31	ENSHCOG00000018217 #36	ENSHCOG00000018310 #37	hid1b (ENSHCOG00000018402)	FADS6 (ENSHCOG00000018416)	trim16 (ENSHCOG00000018423)	tvp23b (ENSHCOG00000018437)
Pinecone sodierfish	MODERN SPECIES	10	acsl5 (ENSMMDG00005017524)	ENSMMDG00005023254	tectb (ENSMMDG00005023261)	ENSMMDG00005023264	plxdc1 (ENSMMDG00005023266)	LASP1 (ENSMMDG00005023270)	ENSMMDG00005023275	plekhm1 (ENSMMDG00005023279)	ENSMMDG00005023282	ENSMMDG00005023294	scn4aa (ENSMMDG00005023298)	ghrhr2 (ENSMMDG00005023308) #18	ENSMMDG00005023312 #19	KANSL1 (ENSMMDG00005023314) #20	CRHR1 (ENSMMDG00005023317) #21	FAM171A2 (ENSMMDG00005023321) #22	grnb (ENSMMDG00005023323) #24	ENSMMDG00005023327 #25	ENSMMDG00005023328 #26	GRB7 (ENSMMDG00005023330) #27	ENSMMDG00005023331 #28	ENSMMDG00005023332 #29	ccr10 (ENSMMDG00005023334) #30	ENSMMDG00005023335 #31	ENSMMDG00005023337	ENSMMDG00005023338 #33	ENSMMDG00005023339 #34	ENSMMDG00005023340 #35	ENSMMDG00005023341 #36	C1QL1 (ENSMMDG00005023342)	dcakd (ENSMMDG00005023343)
Cod	MODERN SPECIES	9	tmem204 (ENSGMOG00000013863)	ENSGMOG00000013794	ENSGMOG00000036843	ENSGMOG00000027901	metrn (ENSGMOG00000031031)	ENSGMOG00000005122	ENSGMOG00000036224	ENSGMOG00000020429	ENSGMOG00000024983	ENSGMOG00000035228	ENSGMOG00000036342	ENSGMOG00000027465	ENSGMOG00000028001 #19	ENSGMOG00000014837 #20	ENSGMOG00000008818 #21	ENSGMOG00000035188 #22	ENSGMOG00000015066 #24	ENSGMOG00000032057	ENSGMOG00000030603	ENSGMOG00000024451	ENSGMOG00000025655	ENSGMOG00000027677 #24	ENSGMOG00000023605	ENSGMOG00000036898	ENSGMOG00000035770	aldoab (ENSGMOG00000009708)	ENSGMOG00000023640	ENSGMOG00000026852	ENSGMOG00000024565	ENSGMOG00000032775	ENSGMOG00000013990
Protacanthopterygii	ANCESTRAL SPECIES	69	ENSGT00550000075038	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT01100000264459	ENSGT00940000166534 #18	ENSGT00940000159417	ENSGT01030000234570.d.b.a.b.b.a.a	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361	ENSGT01080000257365.b.a.a.b.b.e.d
Salmoninae	ANCESTRAL SPECIES	9	ENSGT00940000163949.a	ENSGT00950000183160.A.g	ENSGT00550000075038	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT01100000264459	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361	ENSGT01080000257365.b.a.a.b.b.e.d
Salmoninae_a	ANCESTRAL SPECIES	17	ENSGT00940000163949.a	ENSGT00940000172928.b	ENSGT00950000183160.A.g	ENSGT00550000075038	ENSGT00940000162478.v	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361	ENSGT01080000257365.b.a.a.b.b.e.d
Oncorhynchus	ANCESTRAL SPECIES	26	ENSGT00550000075078	ENSGT00940000163949.a	ENSGT00940000172928.b	ENSGT00950000183160.A.g	ENSGT00550000075038	ENSGT00940000162478.v	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361.e	ENSGT01080000257365.b.a.a.b.b.e.d
Oncorhynchus_a	ANCESTRAL SPECIES	21	ENSGT00940000163949.a	ENSGT00940000172928.b	ENSGT00950000183160.A.g	ENSGT00550000075038	ENSGT00940000162478.v	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361.e	ENSGT01080000257365.b.a.a.b.b.e.d
Chinook salmon	MODERN SPECIES	16	ENSOTSG00005043989	ENSOTSG00005043992	pus3 (ENSOTSG00005043993)	dcakd (ENSOTSG00005043994)	C1QL1 (ENSOTSG00005043995)	ENSOTSG00005043996 #34	ENSOTSG00005043997 #33	ENSOTSG00005043998 #31	ccr10 (ENSOTSG00005044001) #30	ifnphi4 (ENSOTSG00005044003)	ENSOTSG00005044004	scn4aa (ENSOTSG00005044007)	ghrhr2 (ENSOTSG00005044036) #18	ENSOTSG00005044044 #19	ENSOTSG00005044055 #20	FAM171A2 (ENSOTSG00005044056) #22	zdhhc6 (ENSOTSG00005044058)	acsl5 (ENSOTSG00005044059)	tectb (ENSOTSG00005044079)	ENSOTSG00005044082	ENSOTSG00005044084	plxdc1 (ENSOTSG00005044087)	LASP1 (ENSOTSG00005044088)	ENSOTSG00005044089	ENSOTSG00005044090	acbd4 (ENSOTSG00005044091)	PLCD3 (ENSOTSG00005044093)	nmt1b (ENSOTSG00005044406)	ENSOTSG00005044542	ENSOTSG00005044567	ENSOTSG00005045144
Coho salmon	MODERN SPECIES	12	pus3 (ENSOKIG00005014859)	dcakd (ENSOKIG00005014867)	C1QL1 (ENSOKIG00005014876)	ENSOKIG00005014877 #34	ENSOKIG00005014888 #33	ENSOKIG00005014893 #31	ccr10 (ENSOKIG00005014896) #30	ENSOKIG00005014902	ifnphi4 (ENSOKIG00005014907)	ENSOKIG00005014915	scn4aa (ENSOKIG00005014952)	ghrhr2 (ENSOKIG00005015127) #18	ENSOKIG00005015162 #19	KANSL1 (ENSOKIG00005015222) #20	ENSOKIG00005015240	FAM171A2 (ENSOKIG00005015249) #22	zdhhc6 (ENSOKIG00005015273)	acsl5 (ENSOKIG00005015392)	ENSOKIG00005015582	tectb (ENSOKIG00005015650)	ENSOKIG00005015668	ENSOKIG00005015682	plxdc1 (ENSOKIG00005015691)	LASP1 (ENSOKIG00005015753)	ENSOKIG00005015763	ENSOKIG00005015775	acbd4 (ENSOKIG00005015788)	PLCD3 (ENSOKIG00005015805)	nmt1b (ENSOKIG00005015884)	ENSOKIG00005016309	ENSOKIG00005017215
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000075693	ENSOMYG00000032751 #34	ENSOMYG00000032772 #33	ENSOMYG00000073308 #31	ccr10 (ENSOMYG00000032778) #30	ENSOMYG00000071942	ENSOMYG00000068782	ifn5 (ENSOMYG00000032782)	ENSOMYG00000076007	scn4aa (ENSOMYG00000033247)	ENSOMYG00000076218	ghrhr2 (ENSOMYG00000035211) #18	ENSOMYG00000035281 #19	ENSOMYG00000052829	ENSOMYG00000035368 #20	ENSOMYG00000035382 #22	ENSOMYG00000060541	zdhhc6 (ENSOMYG00000035455)	acsl5 (ENSOMYG00000035653)	ENSOMYG00000036853	tectb (ENSOMYG00000036876)	ENSOMYG00000036889	plxdc1 (ENSOMYG00000036914)	ENSOMYG00000033216	ENSOMYG00000036950	acbd4 (ENSOMYG00000037002)	ENSOMYG00000037021	nmt1b (ENSOMYG00000037060)	ENSOMYG00000037274	ENSOMYG00000038778	znf281b (ENSOMYG00000038791)
Salmo	ANCESTRAL SPECIES	3	ENSGT00940000163949.a	ENSGT00940000172928.b	ENSGT00950000183160.A.g	ENSGT00550000075038	ENSGT00940000162478.v	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00510000050089.a.b	ENSGT00730000111991	ENSGT00940000167352	ENSGT00940000166534 #18	ENSGT00940000155494.j #19	ENSGT00530000063688.b.nb.a #20	ENSGT00950000183184.b.a #22	ENSGT00940000155642	ENSGT00940000156651	ENSGT00940000163069	ENSGT00940000159064	ENSGT00390000000221.B	ENSGT00440000033408.b.b	ENSGT00940000154775.c.a.a.a	ENSGT00940000157509.b	ENSGT00940000157982.a.a	ENSGT00940000160739	ENSGT00940000156993.c	ENSGT00390000017837.a.w	ENSGT00940000164099.b	ENSGT00940000166361	ENSGT01080000257365.b.a.a.b.b.e.d
Atlantic salmon	MODERN SPECIES	10	dcakd (ENSSSAG00000086896)	ENSSSAG00000083319	ENDD1 (ENSSSAG00000063056) #34	ud2a2 (ENSSSAG00000063059) #33	RAMP1 (ENSSSAG00000063065) #31	ccr10 (ENSSSAG00000063070) #30	ENSSSAG00000113249	ENSSSAG00000102905	ENSSSAG00000094541	scn4aa (ENSSSAG00000063232)	ENSSSAG00000089079	ghrhr2 (ENSSSAG00000084197) #18	ENSSSAG00000086680 #19	ENSSSAG00000067140	ENSSSAG00000067147 #20	ENSSSAG00000067157 #22	acsl5 (ENSSSAG00000101372)	zdhhc6 (ENSSSAG00000067169)	ENSSSAG00000067568	tectb (ENSSSAG00000067584)	ENSSSAG00000067589	plxdc1 (ENSSSAG00000067597)	lasp1 (ENSSSAG00000108898)	ENSSSAG00000067790	ENSSSAG00000067801	ENSSSAG00000096867	acbd4 (ENSSSAG00000117408)	ENSSSAG00000067830	nmt1b (ENSSSAG00000068629)	ENSSSAG00000109408	ENSSSAG00000068775
River trout	MODERN SPECIES	11	ENSSTUG00000026960	pus3 (ENSSTUG00000026988)	ENSSTUG00000026995	dcakd (ENSSTUG00000027003)	C1QL1 (ENSSTUG00000027013)	ENSSTUG00000027016 #34	ENSSTUG00000027028 #33	ENSSTUG00000027032 #31	ccr10 (ENSSTUG00000027040) #30	ifnphi4 (ENSSTUG00000027046)	ENSSTUG00000027061	scn4aa (ENSSTUG00000027071)	ghrhr2 (ENSSTUG00000027229) #18	ENSSTUG00000027251 #19	ENSSTUG00000027383 #20	FAM171A2 (ENSSTUG00000027391) #22	zdhhc6 (ENSSTUG00000027402)	acsl5 (ENSSTUG00000027452)	tectb (ENSSTUG00000029327)	ENSSTUG00000029342	plxdc1 (ENSSTUG00000029351)	LASP1 (ENSSTUG00000029378)	ENSSTUG00000029386	ENSSTUG00000029403	acbd4 (ENSSTUG00000029426)	PLCD3 (ENSSTUG00000029449)	nmt1b (ENSSTUG00000030136)	ENSSTUG00000030461	ENSSTUG00000031686	znf281b (ENSSTUG00000031699)	ENSSTUG00000031832
Huchen	MODERN SPECIES	659						ENSHHUG00000007531 #31	ccr10 (ENSHHUG00000007535) #30	ENSHHUG00000007547	ENSHHUG00000007551	ENSHHUG00000007560	scn4aa (ENSHHUG00000007564)	ENSHHUG00000007576	ghrhr2 (ENSHHUG00000007586) #18	ENSHHUG00000007626 #19	KANSL1 (ENSHHUG00000007806) #20	FAM171A2 (ENSHHUG00000007834) #22	zdhhc6 (ENSHHUG00000007884)	acsl5 (ENSHHUG00000007924)	ENSHHUG00000008535	ENSHHUG00000008540	ENSHHUG00000008562	ENSHHUG00000008564	ENSHHUG00000008569	tectb (ENSHHUG00000008573)	ENSHHUG00000008690	ENSHHUG00000008811
Northern pike	MODERN SPECIES	4	cavin1b (ENSELUG00000032131)	ENSELUG00000004647	ENSELUG00000006537	ENSELUG00000004638	ENSELUG00000006504	ENSELUG00000025675	ENSELUG00000006525	ENSELUG00000030744	ENSELUG00000004664	ENSELUG00000006512	ENSELUG00000031917	ENSELUG00000009361	ENSELUG00000009116	ENSELUG00000005800	ENSELUG00000000164	FAM171A2 (ENSELUG00000005670) #22	zdhhc6 (ENSELUG00000005659)	acsl5 (ENSELUG00000005610)	ENSELUG00000005533	tectb (ENSELUG00000005474)	ENSELUG00000005455	plxdc1 (ENSELUG00000005434)	LASP1 (ENSELUG00000005409)	ENSELUG00000005399	ENSELUG00000032659	ENSELUG00000029183	ENSELUG00000005360	ENSELUG00000025492	ARHGAP23 (ENSELUG00000005289)	ENSELUG00000029518	acbd4 (ENSELUG00000005215)
Otomorpha	ANCESTRAL SPECIES	295															ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25	ENSGT00950000183080.a.b.b.a.b #26	ENSGT00940000158710 #27	ENSGT00940000157961.A #28	ENSGT00940000156292.g.a #29	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000168205 #31	ENSGT01030000234575.c.a.a.a.b #32	ENSGT00940000165400 #33	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000162478	ENSGT00550000075038	ENSGT00950000183160.A	ENSGT00940000163949.a
Clupeiformes	ANCESTRAL SPECIES	183	ENSGT01020000230346.F	ENSGT00940000155348.B.d	ENSGT00940000160643.j	ENSGT00940000159914	ENSGT01100000263507.E.a.a.a.b.a.a	ENSGT00940000153912.A.a	ENSGT00940000155910.c.b.a.b.b	ENSGT00940000160064.a.a	ENSGT00390000015768.i.b	ENSGT00940000169682	ENSGT00940000155157.b	ENSGT00940000156955.a.b	ENSGT00390000017384	ENSGT00940000154883.e.a.e	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000156497.b #25
Atlantic herring	MODERN SPECIES		mpp2b (ENSCHAG00000008210)	pyyb (ENSCHAG00000008155)	tut1 (ENSCHAG00000008128)	ENSCHAG00000008115	ENSCHAG00000008076	ENSCHAG00000008058	GRID1 (ENSCHAG00000006048)	ENSCHAG00000005964	WAPL (ENSCHAG00000005808)	ENSCHAG00000005766	ENSCHAG00000005702	htra1b (ENSCHAG00000005536)	ENSCHAG00000005524	srsf2a (ENSCHAG00000005495)	CRHR1 (ENSCHAG00000000288) ##21	FAM171A2 (ENSCHAG00000000071) #22	grnb (ENSCHAG00000000066) #24	ENSCHAG00000000059 #25	ENSCHAG00000000058	ENSCHAG00000000056	ENSCHAG00000000054	ENSCHAG00000000052	ENSCHAG00000020401	ENSCHAG00000020328	ENSCHAG00000020311	ENSCHAG00000020301	atf4b (ENSCHAG00000020262)	ENSCHAG00000020086	mief1 (ENSCHAG00000020061)	ENSCHAG00000020029	mpst (ENSCHAG00000020020)
Denticle herring	MODERN SPECIES	11	ppp1r3cb (ENSDCDG00000033276)	MPP3 (ENSDCDG00000033280)	or63b2 (ENSDCDG00000033290)	rsph3 (ENSDCDG00000033291)	tut1 (ENSDCDG00000033292)	ENSDCDG00000033293	ENSDCDG00000033294	GRID1 (ENSDCDG00000033306)	ENSDCDG00000033329	WAPL (ENSDCDG00000000390)	PLEKHA1 (ENSDCDG00000000673)	htra1b (ENSDCDG00000000709)	ENSDCDG00000000750	srsf2a (ENSDCDG00000000754)	CRHR1 (ENSDCDG00000000851) ##21	FAM171A2 (ENSDCDG00000001412) #22	grnb (ENSDCDG00000001416) #24	ENSDCDG00000001420 #25	acmsd (ENSDCDG00000001425)	ENSDCDG00000001439	ENSDCDG00000001532	ENSDCDG00000001650	ENSDCDG00000001729	SPATA20 (ENSDCDG00000001757)	CACNA1G (ENSDCDG00000001876)	ENSDCDG00000001889	ENSDCDG00000001891	dnaaf3 (ENSDCDG00000001895)	llgl2 (ENSDCDG00000001964)	ENSDCDG00000002334	ENSDCDG00000002338
Otophysi	ANCESTRAL SPECIES	271												ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00550000075038	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000156292.g.a #29	ENSGT00940000157961.A #28	ENSGT00940000158710 #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00940000156497.b #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00950000183160.A	ENSGT00940000163949.a	ENSGT00550000075078
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00530000066748	ENSGT00940000154852.a	ENSGT00940000164903.a	ENSGT00390000001260	ENSGT00940000167095.A	ENSGT00550000075088.a.b.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00990000204511	ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00550000075038.b	ENSGT00550000075038.a	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000179222	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000156292.g.a #29	ENSGT00940000157961.A.d.a #28	ENSGT00940000158710 #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00940000156497.b #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00950000183160.A
Channel catfish	MODERN SPECIES		ENSIPUG00000000373	SBK1 (ENSIPUG00000000372)	ENSIPUG00000000368	cog7 (ENSIPUG00000000362)	ENSIPUG00000000357	ube2ib (ENSIPUG00000000347)	ENSIPUG00000000342	pdpk1b (ENSIPUG00000000337)	tsr3 (ENSIPUG00000000336)	gnptg (ENSIPUG00000000335)	ENSIPUG00000000331	dnaaf3 (ENSIPUG00000000326)	ENSIPUG00000000316	CPT1C (ENSIPUG00000000309)	CRHR1 (ENSIPUG00000000305) ##21	FAM171A2 (ENSIPUG00000000301) #22	dcakd (ENSIPUG00000000297)	ENSIPUG00000000296	ENSIPUG00000000293 #34	ENSIPUG00000000291 #31	ccr10 (ENSIPUG00000000289) #30	fmnl1 (ENSIPUG00000000282) #29	ENSIPUG00000000277 #28	ENSIPUG00000000273	srcin1b (ENSIPUG00000000270) #28	GRB10 (ENSIPUG00000000265) #27	ENSIPUG00000000262	MLF2 (ENSIPUG00000000256)	styk1b (ENSIPUG00000000248)	gstk1 (ENSIPUG00000000237)	ENSIPUG00000000229
Characiphysae_b	ANCESTRAL SPECIES	99	ENSGT00530000066748	ENSGT00940000154852.a	ENSGT00940000164903.a	ENSGT00390000001260	ENSGT00940000167095.A	ENSGT00550000075088.a.b.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00990000204511.a	ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00550000075038.b
Characoidei	ANCESTRAL SPECIES	60	ENSGT00530000066748	ENSGT00940000154852.a	ENSGT00940000164903.a	ENSGT00390000001260	ENSGT00940000167095.A	ENSGT00550000075088.a.b.a	ENSGT00940000160374	ENSGT00940000155267	ENSGT00390000014665	ENSGT00510000048359	ENSGT00990000204511.a	ENSGT00390000002069	ENSGT00940000160609.e	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00940000158410.g.a.b ##21	ENSGT00950000183184.b.a #22	ENSGT00550000075038.a	ENSGT00940000162478	ENSGT01030000234592.A.b.b.b.a #34	ENSGT00940000165400 #33	ENSGT00940000179222	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000156292.g.a #29	ENSGT00940000157961.A.d.a #28	ENSGT00940000158710 #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00940000156497.b #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00950000183160.A	ENSGT00940000163949.a	ENSGT00550000075078
Red-bellied piranha	MODERN SPECIES	70	ENSPNAG00000002526	SBK1 (ENSPNAG00000002535)	kcnc3b (ENSPNAG00000002550)	cog7 (ENSPNAG00000013140)	ENSPNAG00000013152	ube2ib (ENSPNAG00000002592)	ENSPNAG00000002624	pdpk1b (ENSPNAG00000013265)	tsr3 (ENSPNAG00000002671)	gnptg (ENSPNAG00000002682)	ENSPNAG00000013288	dnaaf3 (ENSPNAG00000002694)	ENSPNAG00000014014	ENSPNAG00000003026	CRHR1 (ENSPNAG00000014160) ##21	FAM171A2 (ENSPNAG00000014175) #22	dcakd (ENSPNAG00000014194)	C1QL1 (ENSPNAG00000014205)	ENSPNAG00000014220 #34	ENSPNAG00000014225 #33	ccr10 (ENSPNAG00000014227) #30	ENSPNAG00000014244	FMNL1 (ENSPNAG00000014303) #29	SRCIN1 (ENSPNAG00000014388) #28	ENSPNAG00000014410	GRB7 (ENSPNAG00000014468) #27	arf2b (ENSPNAG00000006183) ##26	ENSPNAG00000003149 #25	grnb (ENSPNAG00000003156) #24	pus3 (ENSPNAG00000014541)	ENSPNAG00000003173
Mexicana tetra	MODERN SPECIES	2	cluap1 (ENSAMXG00000007155)	NLRC3 (ENSAMXG00000007153)	kcnc3b (ENSAMXG00000011957)	cog7 (ENSAMXG00000011966)	ENSAMXG00000040411	ube2ib (ENSAMXG00000031406)	ENSAMXG00000011993	pdpk1b (ENSAMXG00000012001)	tsr3 (ENSAMXG00000034086)	gnptg (ENSAMXG00000038348)	ENSAMXG00000037020	dnaaf3 (ENSAMXG00000012033)	ENSAMXG00000012044	ENSAMXG00000012048	CRHR1 (ENSAMXG00000038656) ##21	FAM171A2 (ENSAMXG00000032013) #22	ENSAMXG00000039987	dcakd (ENSAMXG00000012074)	C1QL1 (ENSAMXG00000035401)	ENSAMXG00000037172 #34	ENSAMXG00000025619 #33	ENSAMXG00000033024	pogzb (ENSAMXG00000000037)	ENSAMXG00000041950	plekho1b (ENSAMXG00000000053)	mrap2a (ENSAMXG00000000057)	cep162 (ENSAMXG00000000062)	si:ch211-198c19.1 (ENSAMXG00000000065)
Electric eel	MODERN SPECIES	339								xbp1 (ENSEEEG00000008589)	ZNRF3 (ENSEEEG00000008586)	coq5 (ENSEEEG00000008534)	gnptg (ENSEEEG00000008531)	ENSEEEG00000008529	dnaaf3 (ENSEEEG00000008528)	ENSEEEG00000008206	CRHR1 (ENSEEEG00000008179) ##21	FAM171A2 (ENSEEEG00000008178) #22	dcakd (ENSEEEG00000008176)	ENSEEEG00000008174	ralbp1 (ENSEEEG00000008137)	C2CD4C (ENSEEEG00000008134)	gna11b (ENSEEEG00000008115)	ENSEEEG00000008109	tle2c (ENSEEEG00000008104)	PLPP2 (ENSEEEG00000008103)	shda (ENSEEEG00000008101)	yju2 (ENSEEEG00000008098)	ENSEEEG00000008097	scn12aa (ENSEEEG00000008071)	ACVR2B (ENSEEEG00000008066)	ENSEEEG00000008063	ENSEEEG00000008062
Cyprinoidei	ANCESTRAL SPECIES	98	ENSGT00940000160173	ENSGT00390000008957	ENSGT00940000159861	ENSGT00530000066748	ENSGT00940000154852.a	ENSGT00510000048359	ENSGT00390000014665	ENSGT00940000155267	ENSGT00940000160374	ENSGT00550000075088.a.b.a	ENSGT00940000167095.A	ENSGT00390000001260	ENSGT00940000164903.a	ENSGT00390000002069	ENSGT01060000248595.b.a.b.b.a.b	ENSGT00950000183184.b.a #22	ENSGT00550000075038	ENSGT00940000162478	ENSGT00940000165400 #33	ENSGT00940000168205 #31	ENSGT01030000234667.a.a.a.a.a #30	ENSGT00940000157371.lb.a	ENSGT00940000156292.g.a #29	ENSGT00940000157961.A #28	ENSGT00940000158710 #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00940000156497.b #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00950000183160.A	ENSGT00940000175331
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	617	ENSGT00940000160173	ENSGT00390000008957.g.a	ENSGT00940000159861.j	ENSGT00940000154852.a.h	ENSGT00510000048359.e	ENSGT00390000014665.h	ENSGT00940000155267.s.b	ENSGT00940000160374.d.a.b	ENSGT00550000075088.a.b.a.a	ENSGT00940000167095.A.a	ENSGT00390000001260.h	ENSGT00940000164903.a.d	ENSGT01050000246604.B	ENSGT01050000246604.A	ENSGT01060000248595.b.a.b.b.a.b.b	ENSGT00950000183184.b.a.a.a #22
Goldfish	MODERN SPECIES	16	NLRC3 (ENSCARG00000023489)	pdpk1b (ENSCARG00000023556)	SBK1 (ENSCARG00000023702)	gnptg (ENSCARG00000023708)	ENSCARG00000023719	tsr3 (ENSCARG00000023724)	ENSCARG00000023738	ENSCARG00000023768	cog7 (ENSCARG00000023780)	kcnc3b (ENSCARG00000023808)	ENSCARG00000023835	ENSCARG00000023838	ENSCARG00000023842	ENSCARG00000023849	ENSCARG00000023867	FAM171A2 (ENSCARG00000024165) #22	dcakd (ENSCARG00000024171)	C1QL1 (ENSCARG00000024175)	ENSCARG00000024181 #31	ccr10 (ENSCARG00000024197) #30	FMNL1 (ENSCARG00000024220) #29	srcin1b (ENSCARG00000024920) #28	rab11fip3 (ENSCARG00000024933)	telo2 (ENSCARG00000024964)	tmem204 (ENSCARG00000025244)	ENSCARG00000025259	ENSCARG00000025275	anks3 (ENSCARG00000025306)	zgc:112185 (ENSCARG00000025317)	ENSCARG00000025332	ENSCARG00000025340
Cyprininae_a	ANCESTRAL SPECIES	140	ENSGT00940000160173	ENSGT00390000008957.g.a	ENSGT00940000159861.j	ENSGT00530000066748.f	ENSGT00940000154852.a.h	ENSGT00510000048359.e	ENSGT00390000014665.h	ENSGT00940000155267.s.b	ENSGT00940000160374.d.a.b	ENSGT00940000167095.A.a	ENSGT00390000001260.h	ENSGT00940000164903.a.d	ENSGT01050000246604.B	ENSGT01050000246604.A	ENSGT01060000248595.b.a.b.b.a.b.b	ENSGT00950000183184.b.a.a.a #22	ENSGT00550000075038.c	ENSGT00940000162478.e.a	ENSGT00940000168205.a #31	ENSGT01030000234667.a.a.a.a.a.c #30	ENSGT00940000156292.g.a.f #29	ENSGT00940000157961.A.a.a.a #28	ENSGT00940000157961.A.b #28	ENSGT00940000158710.d #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00470000042293.a.b.a.a.o ##24	ENSGT00950000183160.A.a	ENSGT00550000075078.a	ENSGT00940000163949.a.f	ENSGT00940000157008.e	ENSGT00530000063835.b
Golden-line barbel	MODERN SPECIES	18	WDR90 (ENSSGRG00000007503)	cluap1 (ENSSGRG00000007507)	NLRC3 (ENSSGRG00000007508)	ENSSGRG00000007600	SBK1 (ENSSGRG00000007605)	gnptg (ENSSGRG00000007631)	tsr3 (ENSSGRG00000007710)	pdpk1b (ENSSGRG00000007764)	ENSSGRG00000008946	ube2ib (ENSSGRG00000008952)	cog7 (ENSSGRG00000009064)	kcnc3b (ENSSGRG00000009295)	ENSSGRG00000009302	ENSSGRG00000009303	ENSSGRG00000009336	ENSSGRG00000011083 #22	FAM171A2 (ENSSGRG00000011084) #22	dcakd (ENSSGRG00000011085)	C1QL1 (ENSSGRG00000011086)	ENSSGRG00000011087 #33	ENSSGRG00000011088 #31	ENSSGRG00000011089	ENSSGRG00000011090	FMNL1 (ENSSGRG00000011095) #29	ENSSGRG00000011300 #28	GRB7 (ENSSGRG00000011303) #27	arf2b (ENSSGRG00000011304) ##26	ENSSGRG00000011342 ##24	pus3 (ENSSGRG00000011345)	NAGLU (ENSSGRG00000011353)	coasy (ENSSGRG00000011354)
Common carp reference	MODERN SPECIES	40	rhbdl1 (ENSCCRG00000077333)	h1-0 (ENSCCRG00000057432)	rhot2 (ENSCCRG00000036930)	WDR90 (ENSCCRG00000038797)	cluap1 (ENSCCRG00000058859)	ENSCCRG00000073766	ENSCCRG00000079635	gnptg (ENSCCRG00000007081)	tsr3 (ENSCCRG00000007114)	pdpk1b (ENSCCRG00000007123)	ENSCCRG00000062020	ENSCCRG00000008015	cog7 (ENSCCRG00000008022)	kcnc3b (ENSCCRG00000060043)	ENSCCRG00000027957	ENSCCRG00000027938 #22	dcakd (ENSCCRG00000067163)	ENSCCRG00000079440	ENSCCRG00000073607 #31	ccr10 (ENSCCRG00000078278) #30	ENSCCRG00000075755 #29	ENSCCRG00000073782 #28	ENSCCRG00000046048 #25	pus3 (ENSCCRG00000046053)	coasy (ENSCCRG00000060220)	ENSCCRG00000065976	ENSCCRG00000074505	riok3 (ENSCCRG00000001500)	ENSCCRG00000076199	rbbp8 (ENSCCRG00000062274)	ENSCCRG00000020658
Cyprininae	ANCESTRAL SPECIES	191	ENSGT00940000158109.c	ENSGT00390000008957.h	ENSGT00940000159861.i	ENSGT00530000066748	ENSGT00940000154852.a.g	ENSGT00510000048359.f	ENSGT00390000014665.g	ENSGT00940000155267.s.a	ENSGT00940000160374.d.a.a	ENSGT00550000075088.a.b.a.b	ENSGT00940000167095.A.b	ENSGT00390000001260.g	ENSGT00940000154641.C.b.k.b	ENSGT00390000002069.a	ENSGT01060000248595.b.a.b.b.a.b.a	ENSGT00950000183184.b.a.a.b #22	ENSGT00550000075038.d	ENSGT00940000162478.e.b	ENSGT00940000165400 #33	ENSGT00940000168205.b #31	ENSGT01030000234667.a.a.a.a.a.d #30	ENSGT00940000157371.lb.a	ENSGT00940000156292.g.a.e #29	ENSGT00940000157961.A.a.a.b #28	ENSGT00940000158710.c #27	ENSGT00940000157961.A.b #28	ENSGT00940000158710.d #27	ENSGT00950000183080.a.b.b.a.a ##26	ENSGT00940000156497.b.a #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00980000200843 #23
Goldfish	MODERN SPECIES	1513	h1-0 (ENSCARG00000042361)	NLRC3 (ENSCARG00000042899)	ENSCARG00000043086	SBK1 (ENSCARG00000043179)	tsr3 (ENSCARG00000043191)	pdpk1b (ENSCARG00000043425)	ENSCARG00000046296	ENSCARG00000046336	ube2ib (ENSCARG00000046367)	cog7 (ENSCARG00000046443)	kcnc3b (ENSCARG00000046571)	ENSCARG00000046606	ENSCARG00000046643	dnaaf3 (ENSCARG00000028963)	CPT1C (ENSCARG00000029049)	FAM171A2 (ENSCARG00000029762) #22	C1QL1 (ENSCARG00000029770)	ENSCARG00000029772 #33	ccr10 (ENSCARG00000029777) #30	ENSCARG00000029785	FMNL1 (ENSCARG00000029794) #29	SRCIN1 (ENSCARG00000029951) #28	GRB7 (ENSCARG00000030010) #27	arf2b (ENSCARG00000030040) ##26	ENSCARG00000030050 #25	grnb (ENSCARG00000030067) #24	ENSCARG00000030149 #23	si:ch211-40k21.9 (ENSCARG00000030158)	coasy (ENSCARG00000030172)	ENSCARG00000030187	ENSCARG00000030208
Cyprininae_a	ANCESTRAL SPECIES	100	ENSGT00390000008957.h	ENSGT00940000159861.i	ENSGT00530000066748.e	ENSGT00940000154852.a.g	ENSGT00510000048359.f	ENSGT00390000014665.g	ENSGT00940000155267.s.a	ENSGT00940000160374.d.a.a	ENSGT00550000075088.a.b.a.b	ENSGT00550000075088.a.b.a.a	ENSGT00940000167095.A.b	ENSGT00390000001260.g	ENSGT00940000154641.C.b.k.b	ENSGT00390000002069.a	ENSGT01060000248595.b.a.b.b.a.b.a	ENSGT00950000183184.b.a.a.b #22	ENSGT00550000075038.d	ENSGT00940000162478.e.b	ENSGT00940000165400 #33	ENSGT00940000168205.b #31	ENSGT01030000234667.a.a.a.a.a.d #30	ENSGT00940000157371.lb.a	ENSGT00940000156292.g.a.e #29	ENSGT00940000157961.A.a.a.b #28	ENSGT00940000158710.c #27	ENSGT00940000163657.r	ENSGT00940000156497.b.a #25	ENSGT00470000042293.a.b.a.b #24	ENSGT00940000175331	ENSGT00950000183160.A.b	ENSGT00390000005900
Common carp reference	MODERN SPECIES	14	ENSCCRG00000052310	ENSCCRG00000079349	ENSCCRG00000078512	gnptg (ENSCCRG00000056331)	tsr3 (ENSCCRG00000008029)	pdpk1b (ENSCCRG00000052983)	ENSCCRG00000055061	ube2ib (ENSCCRG00000007989)	ENSCCRG00000067688	cog7 (ENSCCRG00000013907)	kcnc3b (ENSCCRG00000053153)	ENSCCRG00000003033	ENSCCRG00000073034	dnaaf3 (ENSCCRG00000006457)	ENSCCRG00000002988	ENSCCRG00000055649 #22	ENSCCRG00000059641	ENSCCRG00000080949 #33	ENSCCRG00000081868 #31	ccr10 (ENSCCRG00000017530) #30	ENSCCRG00000067883	ENSCCRG00000053799 #29	ENSCCRG00000056595 #28	ENSCCRG00000005320 #27	ENSCCRG00000022469	ENSCCRG00000056255 #25	grnb (ENSCCRG00000005303) #24	si:ch211-40k21.9 (ENSCCRG00000005295)	pus3 (ENSCCRG00000059480)	coasy (ENSCCRG00000005281)	ENSCCRG00000004619
Golden-line barbel	MODERN SPECIES	269									ENSSGRG00000048880	ube2ib (ENSSGRG00000048872)	cog7 (ENSSGRG00000048698)	kcnc3b (ENSSGRG00000048693)	ENSSGRG00000048691	ENSSGRG00000048690	CPT1C (ENSSGRG00000048198)	FAM171A2 (ENSSGRG00000048190) #22	dcakd (ENSSGRG00000048189)	C1QL1 (ENSSGRG00000048188)	ENSSGRG00000048187 #33	ccr10 (ENSSGRG00000048186) #30	ENSSGRG00000048185 #31	FMNL1 (ENSSGRG00000048183) #29	srcin1b (ENSSGRG00000048180) #28	GRB7 (ENSSGRG00000048179) #27	ENSSGRG00000048178	ENSSGRG00000048177	grnb (ENSSGRG00000048174) #24	si:ch211-40k21.9 (ENSSGRG00000048173)	pus3 (ENSSGRG00000048172)	NAGLU (ENSSGRG00000048171)	coasy (ENSSGRG00000048170)
Cyprininae	ANCESTRAL SPECIES	879																ENSGT00950000183184.b.a.b #22	ENSGT00550000075038.c	ENSGT00940000162478.e.a	ENSGT00940000168205.a #31	ENSGT01030000234667.a.a.a.a.a.c #30	ENSGT00940000156292.g.a.f #29	ENSGT00940000157961.A.a.a.a #28
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000183184.b.a.b #22
Golden-line barbel	MODERN SPECIES	18	cluap1 (ENSSGRG00000007507)	NLRC3 (ENSSGRG00000007508)	ENSSGRG00000007600	SBK1 (ENSSGRG00000007605)	gnptg (ENSSGRG00000007631)	tsr3 (ENSSGRG00000007710)	pdpk1b (ENSSGRG00000007764)	ENSSGRG00000008946	ube2ib (ENSSGRG00000008952)	cog7 (ENSSGRG00000009064)	kcnc3b (ENSSGRG00000009295)	ENSSGRG00000009302	ENSSGRG00000009303	ENSSGRG00000009336	ENSSGRG00000011083 #22	FAM171A2 (ENSSGRG00000011084) #22	dcakd (ENSSGRG00000011085)	C1QL1 (ENSSGRG00000011086)	ENSSGRG00000011087 #33	ENSSGRG00000011088 #31	ENSSGRG00000011089	ENSSGRG00000011090	FMNL1 (ENSSGRG00000011095) #29	ENSSGRG00000011300 #28	GRB7 (ENSSGRG00000011303) #27	arf2b (ENSSGRG00000011304) ##26	ENSSGRG00000011342 ##24	pus3 (ENSSGRG00000011345)	NAGLU (ENSSGRG00000011353)	coasy (ENSSGRG00000011354)	ENSSGRG00000011368
Zebrafish	MODERN SPECIES	16	WDR90 (ENSDARG00000079241)	cluap1 (ENSDARG00000079110)	NLRC3 (ENSDARG00000103146)	ENSDARG00000092499	SBK1 (ENSDARG00000056294)	gnptg (ENSDARG00000038566)	tsr3 (ENSDARG00000038567)	pdpk1b (ENSDARG00000018285)	KCTD5 (ENSDARG00000098817)	ube2ib (ENSDARG00000007438)	cog7 (ENSDARG00000061372)	kcnc3b (ENSDARG00000098816)	dnaaf3 (ENSDARG00000092662)	ENSDARG00000036304	ENSDARG00000061660	FAM171A2 (ENSDARG00000079656) #22	dcakd (ENSDARG00000061638)	ENSDARG00000061672 #33	ENSDARG00000087020 #31	ccr10 (ENSDARG00000040643) #30	ENSDARG00000056502	ENSDARG00000104263 #29	srcin1b (ENSDARG00000101812) #28	GRB7 (ENSDARG00000042726) #27	arf2b (ENSDARG00000016393) ##26	ENSDARG00000056582 #25	grnb (ENSDARG00000025081) #24	si:ch211-40k21.9 (ENSDARG00000097546)	pus3 (ENSDARG00000028976)	NAGLU (ENSDARG00000030156)	coasy (ENSDARG00000042747)
Osteoglossiformes	ANCESTRAL SPECIES	43	ENSGT00440000033966	ENSGT00390000014892	ENSGT00940000159871.b.a.b.b	ENSGT00390000016262	ENSGT00950000182860.a.a.a.ub.b	ENSGT00940000155111	ENSGT00940000154363.B	ENSGT00940000167352	ENSGT01100000264459	ENSGT00940000166534 #18	ENSGT01030000234570.d.b.a.b.b.a.a.b	ENSGT00940000155494.j.b #19	ENSGT00530000063688.b.lb.a #20	ENSGT00950000182950.C.e	ENSGT00940000158410.g #21	ENSGT00950000183184.b.a #22	ENSGT00940000166739	ENSGT00470000042293.a.b.a.b #24
P. kingsleyae	MODERN SPECIES	427																FAM171A2 (ENSPKIG00000005169) #22	slc25a39 (ENSPKIG00000005073)	grnb (ENSPKIG00000004991) #24	ifi35 (ENSPKIG00000004959)	ENSPKIG00000004909 ##25	gpatch8 (ENSPKIG00000004860)	gosr2 (ENSPKIG00000004821)	wnt9b (ENSPKIG00000004782)	ENSPKIG00000004758 #26	GRB7 (ENSPKIG00000004691) #27	SRCIN1 (ENSPKIG00000004506) #28
Asian bonytongue	MODERN SPECIES	18	vps25 (ENSSFOG00015009436)	ENSSFOG00015009378	coa3a (ENSSFOG00015009349)	ARHGAP27 (ENSSFOG00015009227)	plekhm1 (ENSSFOG00015009202)	ENSSFOG00015009185	ENSSFOG00015009177	scn4aa (ENSSFOG00015009051)	ENSSFOG00015020849	ghrhr2 (ENSSFOG00015008984) #18	myl4 (ENSSFOG00015008956)	ENSSFOG00015029310 #19	KANSL1 (ENSSFOG00015008914) #20	cdc27 (ENSSFOG00015008828)	CRHR1 (ENSSFOG00015008760) #21	FAM171A2 (ENSSFOG00015029692) #22	slc25a39 (ENSSFOG00015032300)	ENSSFOG00015024275 #24	ENSSFOG00015031692	HIP1 (ENSSFOG00015008378)	ENSSFOG00015008290	tbl2 (ENSSFOG00015004684)	bcl7bb (ENSSFOG00015008252)	mks1 (ENSSFOG00015008232)	FZD9 (ENSSFOG00015031095)	fkbp6 (ENSSFOG00015008196)	zgc:171740 (ENSSFOG00015027109)	rfc2 (ENSSFOG00015008136)	eif4h (ENSSFOG00015008101)	mybbp1a (ENSSFOG00015008056)	si:dkey-183i3.5 (ENSSFOG00015008012)