Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000161819 #8	ENSGT00910000144349 #10	ENSGT00390000012939 #9	ENSGT00940000158938 #11	ENSGT00390000004940.a.b #12	ENSGT00390000012141.b #13	ENSGT00940000162826	ENSGT00390000000911 #14	ENSGT00390000001206 #15	ENSGT00390000017294 #16	ENSGT00940000158776 #17	ENSGT00510000048936 #18	ENSGT00940000155314 #19	ENSGT00940000156454 #20	ENSGT00940000156050 #21	ENSGT00950000183063.d #22	ENSGT00940000156138 #23	ENSGT00940000156015 #24	ENSGT00730000113107 #25	ENSGT00940000156670 #26	ENSGT00390000004327	ENSGT01030000234528.B.b.b #27	ENSGT00940000153675.a.a.b.e.a ##30	ENSGT00940000159654 #31	ENSGT00930000151052 #32	ENSGT00940000160469 #33	ENSGT00940000162143 #34	ENSGT00940000161227 #35	ENSGT00940000161091 #36	ENSGT00940000155503 #37	ENSGT00450000040404.a
Guinea pig	MODERN SPECIES	25	PLA2G2D (ENSCPOG00000008870) #7	PLA2G2F (ENSCPOG00000033719) #8	UBXN10 (ENSCPOG00000038807) #9	PLA2G2C (ENSCPOG00000031144) #10	VWA5B1 (ENSCPOG00000003014) #11	CAMK2N1 (ENSCPOG00000031753) #12	MUL1 (ENSCPOG00000034079) #13	CDA (ENSCPOG00000036030) #14	PINK1 (ENSCPOG00000024597) #15	DDOST (ENSCPOG00000002786) #16	KIF17 (ENSCPOG00000025758) #17	SH2D5 (ENSCPOG00000002788) #18	ENSCPOG00000013485 #19	EIF4G3 (ENSCPOG00000013487) #20	ECE1 (ENSCPOG00000011666) #21	ALPL (ENSCPOG00000007028) #22	RAP1GAP (ENSCPOG00000024422) #23	USP48 (ENSCPOG00000008464) #24	ENSCPOG00000034722 #25	HSPG2 (ENSCPOG00000026832) #26	ENSCPOG00000038881 #27	ENSCPOG00000032739 #28	ENSCPOG00000030052 #29	CDC42 (ENSCPOG00000006543) #30	WNT4 (ENSCPOG00000040292) #31	ZBTB40 (ENSCPOG00000012844) #32	EPHA8 (ENSCPOG00000021134) #33	C1QA (ENSCPOG00000030985) #34	C1QC (ENSCPOG00000031590) #35	C1QB (ENSCPOG00000008124) #36	EPHB2 (ENSCPOG00000010844) #37
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000161819 #8	ENSGT00910000144349 #10	ENSGT00390000012939 #9	ENSGT00940000158938 #11	ENSGT00390000004940.a.b #12	ENSGT00390000012141.b #13	ENSGT00940000162826	ENSGT00390000000911 #14	ENSGT00390000001206 #15	ENSGT00390000017294 #16	ENSGT00940000158776 #17	ENSGT00510000048936 #18	ENSGT00940000155314 #19	ENSGT00940000156454 #20	ENSGT00940000156050 #21	ENSGT00950000183063.d #22	ENSGT00940000156138 #23	ENSGT00940000156015 #24	ENSGT00730000113107 #25	ENSGT00940000156670 #26	ENSGT00390000004327	ENSGT01030000234528.B.b.b #27	ENSGT00940000153675.a.a.b.f #30	ENSGT00940000159654 #31	ENSGT00930000151052 #32	ENSGT00940000160469 #33	ENSGT00940000162143 #34	ENSGT00940000161227 #35	ENSGT00940000161091 #36	ENSGT00940000155503 #37	ENSGT00450000040404.a
Long-tailed chinchilla	MODERN SPECIES	159	PLA2G2F (ENSCLAG00000012631) #8	PLA2G2C (ENSCLAG00000010694) #10	UBXN10 (ENSCLAG00000007262) #9	ENSCLAG00000007802	VWA5B1 (ENSCLAG00000009213) #11	CAMK2N1 (ENSCLAG00000011210) #12	MUL1 (ENSCLAG00000007620) #13	FAM43B (ENSCLAG00000009147)	CDA (ENSCLAG00000009273) #14	PINK1 (ENSCLAG00000008925) #15	DDOST (ENSCLAG00000012871) #16	SH2D5 (ENSCLAG00000013408) #18	HP1BP3 (ENSCLAG00000016763) #19	EIF4G3 (ENSCLAG00000016985) #20	ECE1 (ENSCLAG00000012254) #21	ALPL (ENSCLAG00000007567) #22	RAP1GAP (ENSCLAG00000011156) #23	USP48 (ENSCLAG00000007619) #24	ENSCLAG00000008631 #25	HSPG2 (ENSCLAG00000009491) #26	ENSCLAG00000008501	ENSCLAG00000009037 #27	ENSCLAG00000009263	CDC42 (ENSCLAG00000011266) #30	WNT4 (ENSCLAG00000010626) #31	ZBTB40 (ENSCLAG00000015032) #32	ENSCLAG00000011831	EPHA8 (ENSCLAG00000014518) #33	C1QA (ENSCLAG00000009255) #34	C1QC (ENSCLAG00000009600) #35	C1QB (ENSCLAG00000011016) #36
Degu	MODERN SPECIES	133	ENSODEG00000020299	MUL1 (ENSODEG00000015312) #13	CDA (ENSODEG00000015598) #14	PINK1 (ENSODEG00000015121) #15	DDOST (ENSODEG00000015039) #16	ENSODEG00000020313	KIF17 (ENSODEG00000015337) #17	SH2D5 (ENSODEG00000015096) #18	ENSODEG00000015109 #19	ENSODEG00000014931	ENSODEG00000015879 #20	ENSODEG00000016820	ENSODEG00000014814 #20	ENSODEG00000015534	ECE1 (ENSODEG00000016105) #21	ALPL (ENSODEG00000014674) #22	RAP1GAP (ENSODEG00000015689) #23	USP48 (ENSODEG00000015315) #24	ENSODEG00000014605 #25	HSPG2 (ENSODEG00000015394) #26	ENSODEG00000014629 #27	ENSODEG00000014468 #27	ENSODEG00000014833	CDC42 (ENSODEG00000015760) ##30	WNT4 (ENSODEG00000014777) #31	ENSODEG00000014387	ENSODEG00000020316	ENSODEG00000016237	ZBTB40 (ENSODEG00000015208) #32	EPHA8 (ENSODEG00000014623) #33	C1QA (ENSODEG00000016110) #34