Murinae	ANCESTRAL SPECIES	39	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.b.a.a.a.b.a.a.b ##33	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b ##33	ENSGT00940000155274.a.b.c.a.a.b ##37	ENSGT00940000155274.a.b.c.a.b.a.b.a.a ##37	ENSGT00940000155274.a.b.c.a.b.a.b.a.b #37	ENSGT00940000154251.A.h.a #35
Mus	ANCESTRAL SPECIES	22	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #19	ENSGT00860000135976 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a #34	ENSGT00940000153165.a.b.a.a.a.a.a.b #33	ENSGT00940000154251.A.h.a.b #35	ENSGT00940000155274.a.b.c.a.b.a.b.a.b #37	ENSGT00940000155274.a.b.c.a.b.a.b.a.a ##37
Mus_A	ANCESTRAL SPECIES	14	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #19	ENSGT00860000135976 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a ##33	ENSGT00940000153165.a.b.a.a.a.a.a.b #33	ENSGT00940000153165.a.b.a.a.a.a.a.a.b #34	ENSGT00940000169481 #36	ENSGT00940000154251.A.h.a.b #35
Ryukyu mouse	MODERN SPECIES	4	Nkd2 (MGP_CAROLIEiJ_G0018709) #7	Slc12a7 (MGP_CAROLIEiJ_G0018708) #8	Slc6a19 (MGP_CAROLIEiJ_G0018707) #9	Slc6a18 (MGP_CAROLIEiJ_G0018706) #10	Tert (MGP_CAROLIEiJ_G0018705) #11	Clptm1l (MGP_CAROLIEiJ_G0018704) #12	Slc6a3 (MGP_CAROLIEiJ_G0018703) #13	Lpcat1 (MGP_CAROLIEiJ_G0018702) #14	Mrpl36 (MGP_CAROLIEiJ_G0018701) #15	Ndufs6 (MGP_CAROLIEiJ_G0018700) #16	Irx4 (MGP_CAROLIEiJ_G0018699) #17	Irx2 (MGP_CAROLIEiJ_G0018698) #18	Irx1 (MGP_CAROLIEiJ_G0018697) #19	MGP_CAROLIEiJ_G0018696 #20	Adamts16 (MGP_CAROLIEiJ_G0018695) #21	Ice1 (MGP_CAROLIEiJ_G0018694) #22	MGP_CAROLIEiJ_G0018693 #23	Ube2ql1 (MGP_CAROLIEiJ_G0018692) #24	Srd5a1 (MGP_CAROLIEiJ_G0018691) #25	Nsun2 (MGP_CAROLIEiJ_G0018690) #26	Tent4a (MGP_CAROLIEiJ_G0018689) #27	Adcy2 (MGP_CAROLIEiJ_G0018688) #28	Cfap90 (MGP_CAROLIEiJ_G0018687) #29	Fastkd3 (MGP_CAROLIEiJ_G0018686) #30	Mtrr (MGP_CAROLIEiJ_G0018685) #31	BC048507 (MGP_CAROLIEiJ_G0018684) #32	Zfp493 (MGP_CAROLIEiJ_G0018683) #33	Zfp85 (MGP_CAROLIEiJ_G0018682) #34	MGP_CAROLIEiJ_G0018681 #35	MGP_CAROLIEiJ_G0018680 #36	Zfp729a (MGP_CAROLIEiJ_G0018679) #37
Mus_B	ANCESTRAL SPECIES	13	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.m #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #19	ENSGT00860000135976 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a ##33	ENSGT00940000153165.a.b.a.a.a.a.a.b #33	ENSGT00940000153165.a.b.a.a.a.a.a.a.b #34	ENSGT00940000169481 #36	ENSGT00940000154251.A.h.a.b #35
Mouse	MODERN SPECIES	4	Trip13 (ENSMUSG00000021569)	Nkd2 (ENSMUSG00000021567) #7	Slc12a7 (ENSMUSG00000017756) #8	Slc6a19 (ENSMUSG00000021565) #9	Slc6a18 (ENSMUSG00000021612) #10	Tert (ENSMUSG00000021611) #11	Clptm1l (ENSMUSG00000021610) #12	Slc6a3 (ENSMUSG00000021609) #13	Lpcat1 (ENSMUSG00000021608) #14	Mrpl36 (ENSMUSG00000021607) #15	Ndufs6 (ENSMUSG00000021606) #16	Irx4 (ENSMUSG00000021604) #17	Irx2 (ENSMUSG00000001504) #18	Irx1 (ENSMUSG00000060969) #19	Adamts16 (ENSMUSG00000049538) #21	Ice1 (ENSMUSG00000034525) #22	Med10 (ENSMUSG00000021598)	Ube2ql1 (ENSMUSG00000052981) #24	Srd5a1 (ENSMUSG00000021594) #25	Nsun2 (ENSMUSG00000021595) #26	Tent4a (ENSMUSG00000034575) #27	Adcy2 (ENSMUSG00000021536) #28	Cfap90 (ENSMUSG00000021534) #29	Fastkd3 (ENSMUSG00000021532) #30	Mtrr (ENSMUSG00000034617) #31	BC048507 (ENSMUSG00000064063) #32	Gm10037 (ENSMUSG00000058246)	Zfp273 (ENSMUSG00000030446) ##33	Zfp493 (ENSMUSG00000090659) #33	Zfp85 (ENSMUSG00000058331) #34	Zfp65 (ENSMUSG00000071281) #36
Mus_C	ANCESTRAL SPECIES	10	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.m #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #19	ENSGT00860000135976 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a ##33	ENSGT00940000153165.a.b.a.a.a.a.a.b #33	ENSGT00940000169481 #36	ENSGT00940000154251.A.h.a.b #35	ENSGT00940000155274.a.b.c.a.b.a.b.a.b #37
Steppe mouse	MODERN SPECIES	3330	Slc12a7 (ENSMSIG00000016137) #8	ENSMSIG00000016283	Slc6a19 (ENSMSIG00000016300) #9	Slc6a18 (ENSMSIG00000016330) #10	Tert (ENSMSIG00000016999) #11	Clptm1l (ENSMSIG00000017023) #12	Slc6a3 (ENSMSIG00000017069) #13	Lpcat1 (ENSMSIG00000017129) #14	Mrpl36 (ENSMSIG00000017166) #15	Ndufs6 (ENSMSIG00000017174) #16	Irx4 (ENSMSIG00000017201) #17	Irx2 (ENSMSIG00000017231) #18	Irx1 (ENSMSIG00000017250) #19	ENSMSIG00000017283 #20	Adamts16 (ENSMSIG00000017303) #21	Ice1 (ENSMSIG00000017478) #22	ENSMSIG00000017532	ENSMSIG00000017563 #23	ENSMSIG00000017620 #24	Nsun2 (ENSMSIG00000017636) #26	Srd5a1 (ENSMSIG00000017747) #25	ENSMSIG00000017762 #27	ENSMSIG00000017798
spretus	MODERN SPECIES	4	Nkd2 (MGP_SPRETEiJ_G0019593) #7	Slc12a7 (MGP_SPRETEiJ_G0019592) #8	Slc6a19 (MGP_SPRETEiJ_G0019591) #9	Slc6a18 (MGP_SPRETEiJ_G0019590) #10	Tert (MGP_SPRETEiJ_G0019589) #11	Clptm1l (MGP_SPRETEiJ_G0019588) #12	Slc6a3 (MGP_SPRETEiJ_G0019587) #13	Lpcat1 (MGP_SPRETEiJ_G0019586) #14	Mrpl36 (MGP_SPRETEiJ_G0019585) #15	Ndufs6 (MGP_SPRETEiJ_G0019584) #16	Irx4 (MGP_SPRETEiJ_G0019583) #17	Irx2 (MGP_SPRETEiJ_G0019582) #18	Irx1 (MGP_SPRETEiJ_G0019581) #19	MGP_SPRETEiJ_G0019580 #20	Adamts16 (MGP_SPRETEiJ_G0019579) #21	Ice1 (MGP_SPRETEiJ_G0019578) #22	MGP_SPRETEiJ_G0019577 #23	MGP_SPRETEiJ_G0019576 #24	Srd5a1 (MGP_SPRETEiJ_G0019575) #25	Nsun2 (MGP_SPRETEiJ_G0019574) #26	Tent4a (MGP_SPRETEiJ_G0019573) #27	Adcy2 (MGP_SPRETEiJ_G0019572) #28	Cfap90 (MGP_SPRETEiJ_G0019571) #29	Fastkd3 (MGP_SPRETEiJ_G0019570) #30	Mtrr (MGP_SPRETEiJ_G0019569) #31	BC048507 (MGP_SPRETEiJ_G0019568) #32	MGP_SPRETEiJ_G0019567 ##33	Zfp493 (MGP_SPRETEiJ_G0019566) #33	MGP_SPRETEiJ_G0019565	Zfp65 (MGP_SPRETEiJ_G0019564) #36	MGP_SPRETEiJ_G0019563 #35
Shrew mouse	MODERN SPECIES	2	Nkd2 (MGP_PahariEiJ_G0015790) #7	Slc12a7 (MGP_PahariEiJ_G0015789) #8	Slc6a19 (MGP_PahariEiJ_G0015788) #9	Slc6a18 (MGP_PahariEiJ_G0015787) #10	Tert (MGP_PahariEiJ_G0015786) #11	Clptm1l (MGP_PahariEiJ_G0015785) #12	Slc6a3 (MGP_PahariEiJ_G0015784) #13	Lpcat1 (MGP_PahariEiJ_G0015783) #14	Mrpl36 (MGP_PahariEiJ_G0015782) #15	Ndufs6 (MGP_PahariEiJ_G0015781) #16	Irx4 (MGP_PahariEiJ_G0015780) #17	Irx2 (MGP_PahariEiJ_G0015779) #18	Irx1 (MGP_PahariEiJ_G0015778) #19	MGP_PahariEiJ_G0015777 #20	Adamts16 (MGP_PahariEiJ_G0015776) #21	Ice1 (MGP_PahariEiJ_G0015775) #22	MGP_PahariEiJ_G0015774 #23	Ube2ql1 (MGP_PahariEiJ_G0015773) #24	Srd5a1 (MGP_PahariEiJ_G0015772) #25	Nsun2 (MGP_PahariEiJ_G0015771) #26	Tent4a (MGP_PahariEiJ_G0015770) #27	Adcy2 (MGP_PahariEiJ_G0015769) #28	Cfap90 (MGP_PahariEiJ_G0015768) #29	Fastkd3 (MGP_PahariEiJ_G0015767) #30	Mtrr (MGP_PahariEiJ_G0015766) #31	BC048507 (MGP_PahariEiJ_G0015765) #32	MGP_PahariEiJ_G0015764 #34	MGP_PahariEiJ_G0015763 #34	Zfp493 (MGP_PahariEiJ_G0015762) #33	MGP_PahariEiJ_G0015761 #36	Zfp729a (MGP_PahariEiJ_G0015760) #37
Rat	MODERN SPECIES		Trip13 (ENSRNOG00000015810)	Nkd2 (ENSRNOG00000016103) #7	Slc12a7 (ENSRNOG00000016372) #8	Slc6a19 (ENSRNOG00000026501) #9	Slc6a18 (ENSRNOG00000016253) #10	Tert (ENSRNOG00000025327) #11	Clptm1l (ENSRNOG00000016923) #12	Slc6a3 (ENSRNOG00000017302) #13	Lpcat1 (ENSRNOG00000017930) #14	Mrpl36 (ENSRNOG00000023407) #15	Ndufs6l1 (ENSRNOG00000062531) #16	Irx4 (ENSRNOG00000012720) #17	Irx2 (ENSRNOG00000012742) #18	Irx1 (ENSRNOG00000033609) #19	Adamts16 (ENSRNOG00000016812) #21	Ice1 (ENSRNOG00000023053) #22	Dlat-ps1 (ENSRNOG00000017095)	Med10 (ENSRNOG00000017150) #23	Ube2ql1 (ENSRNOG00000034075) #24	Nsun2 (ENSRNOG00000017254) #26	Srd5a1 (ENSRNOG00000017601) #25	Tent4a (ENSRNOG00000017613) #27	Ap2b1-ps1 (ENSRNOG00000017678)	Adcy2 (ENSRNOG00000032150) #28	Cfap90 (ENSRNOG00000047406) #29	Fastkd3 (ENSRNOG00000027422) #30	Mtrr (ENSRNOG00000017826) #31	Zfp455l1 (ENSRNOG00000042308) ##33	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963) ##33	LOC102547287 (ENSRNOG00000016462) ##33