Mus	ANCESTRAL SPECIES	22	ENSGT00440000033589.d #8	ENSGT00940000157657 #9	ENSGT00940000154896 #10	ENSGT00940000158906 #11	ENSGT00390000018531 #12	ENSGT00530000063461.A #13	ENSGT00940000161224 #14	ENSGT01030000234574.A.a #15	ENSGT00390000010866 #16	ENSGT00390000015775 #17	ENSGT00940000158596 #18	ENSGT00940000161198 #19	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a #34	ENSGT00940000153165.a.b.a.a.a.a.a.b #35	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00440000033589.d #8	ENSGT00940000157657 #9	ENSGT00940000154896.b #10	ENSGT00940000158906 #11	ENSGT00390000018531 #12	ENSGT00530000063461.A #13	ENSGT00940000161224 #14	ENSGT01030000234574.A.a #15	ENSGT00390000010866 #16	ENSGT00390000015775 #17	ENSGT00940000158596 #18	ENSGT00940000161198 #19	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a #34	ENSGT00940000153165.a.b.a.a.a.a.a.b #35	ENSGT00940000153165.a.b.a.a.a.a.a.a.b #36	ENSGT00940000169481 #37	ENSGT00940000154251.A.h.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00440000033589.d #8	ENSGT00940000157657 #9	ENSGT00940000154896.b #10	ENSGT00940000158906 #11	ENSGT00390000018531 #12	ENSGT00530000063461.A #13	ENSGT00940000161224 #14	ENSGT01030000234574.A.a #15	ENSGT00390000010866.m #16	ENSGT00390000015775 #17	ENSGT00940000158596 #18	ENSGT00940000161198 #19	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a #34	ENSGT00940000153165.a.b.a.a.a.a.a.b #35	ENSGT00940000153165.a.b.a.a.a.a.a.a.b #36	ENSGT00940000169481 #37	ENSGT00940000154251.A.h.a.b
Mouse	MODERN SPECIES	4	Trip13 (ENSMUSG00000021569) #7	Nkd2 (ENSMUSG00000021567) #8	Slc12a7 (ENSMUSG00000017756) #9	Slc6a19 (ENSMUSG00000021565) #10	Slc6a18 (ENSMUSG00000021612) #11	Tert (ENSMUSG00000021611) #12	Clptm1l (ENSMUSG00000021610) #13	Slc6a3 (ENSMUSG00000021609) #14	Lpcat1 (ENSMUSG00000021608) #15	Mrpl36 (ENSMUSG00000021607) #16	Ndufs6 (ENSMUSG00000021606) #17	Irx4 (ENSMUSG00000021604) #18	Irx2 (ENSMUSG00000001504) #19	Irx1 (ENSMUSG00000060969) #20	Adamts16 (ENSMUSG00000049538) #21	Ice1 (ENSMUSG00000034525) #22	Med10 (ENSMUSG00000021598) #23	Ube2ql1 (ENSMUSG00000052981) #24	Srd5a1 (ENSMUSG00000021594) #25	Nsun2 (ENSMUSG00000021595) #26	Tent4a (ENSMUSG00000034575) #27	Adcy2 (ENSMUSG00000021536) #28	Cfap90 (ENSMUSG00000021534) #29	Fastkd3 (ENSMUSG00000021532) #30	Mtrr (ENSMUSG00000034617) #31	BC048507 (ENSMUSG00000064063) #32	Gm10037 (ENSMUSG00000058246) #33	Zfp273 (ENSMUSG00000030446) #34	Zfp493 (ENSMUSG00000090659) #35	Zfp85 (ENSMUSG00000058331) #36	Zfp65 (ENSMUSG00000071281) #37
Mus_C	ANCESTRAL SPECIES	10	ENSGT00440000033589.d #8	ENSGT00940000157657 #9	ENSGT00940000154896.b #10	ENSGT00940000158906 #11	ENSGT00390000018531 #12	ENSGT00530000063461.A #13	ENSGT00940000161224 #14	ENSGT01030000234574.A.a #15	ENSGT00390000010866.m #16	ENSGT00390000015775 #17	ENSGT00940000158596 #18	ENSGT00940000161198 #19	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501	ENSGT00940000161612 #24	ENSGT00940000153665.a #26	ENSGT00950000182886.b.b #25	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p #32	ENSGT00940000153165.a.b.a.a.a.a.a.a.a #34	ENSGT00940000153165.a.b.a.a.a.a.a.b #35	ENSGT00940000169481 #37	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b
Steppe mouse	MODERN SPECIES	3330	Slc12a7 (ENSMSIG00000016137) #9	ENSMSIG00000016283	Slc6a19 (ENSMSIG00000016300) #10	Slc6a18 (ENSMSIG00000016330) #11	Tert (ENSMSIG00000016999) #12	Clptm1l (ENSMSIG00000017023) #13	Slc6a3 (ENSMSIG00000017069) #14	Lpcat1 (ENSMSIG00000017129) #15	Mrpl36 (ENSMSIG00000017166) #16	Ndufs6 (ENSMSIG00000017174) #17	Irx4 (ENSMSIG00000017201) #18	Irx2 (ENSMSIG00000017231) #19	Irx1 (ENSMSIG00000017250) #20	ENSMSIG00000017283	Adamts16 (ENSMSIG00000017303) #21	Ice1 (ENSMSIG00000017478) #22	ENSMSIG00000017532	ENSMSIG00000017563	ENSMSIG00000017620 #24	Nsun2 (ENSMSIG00000017636) #26	Srd5a1 (ENSMSIG00000017747) #25	ENSMSIG00000017762 #27	ENSMSIG00000017798
spretus	MODERN SPECIES	4	Nkd2 (MGP_SPRETEiJ_G0019593) #8	Slc12a7 (MGP_SPRETEiJ_G0019592) #9	Slc6a19 (MGP_SPRETEiJ_G0019591) #10	Slc6a18 (MGP_SPRETEiJ_G0019590) #11	Tert (MGP_SPRETEiJ_G0019589) #12	Clptm1l (MGP_SPRETEiJ_G0019588) #13	Slc6a3 (MGP_SPRETEiJ_G0019587) #14	Lpcat1 (MGP_SPRETEiJ_G0019586) #15	Mrpl36 (MGP_SPRETEiJ_G0019585) #16	Ndufs6 (MGP_SPRETEiJ_G0019584) #17	Irx4 (MGP_SPRETEiJ_G0019583) #18	Irx2 (MGP_SPRETEiJ_G0019582) #19	Irx1 (MGP_SPRETEiJ_G0019581) #20	MGP_SPRETEiJ_G0019580	Adamts16 (MGP_SPRETEiJ_G0019579) #21	Ice1 (MGP_SPRETEiJ_G0019578) #22	MGP_SPRETEiJ_G0019577	MGP_SPRETEiJ_G0019576 #24	Srd5a1 (MGP_SPRETEiJ_G0019575) #25	Nsun2 (MGP_SPRETEiJ_G0019574) #26	Tent4a (MGP_SPRETEiJ_G0019573) #27	Adcy2 (MGP_SPRETEiJ_G0019572) #28	Cfap90 (MGP_SPRETEiJ_G0019571) #29	Fastkd3 (MGP_SPRETEiJ_G0019570) #30	Mtrr (MGP_SPRETEiJ_G0019569) #31	BC048507 (MGP_SPRETEiJ_G0019568) #32	MGP_SPRETEiJ_G0019567 #34	Zfp493 (MGP_SPRETEiJ_G0019566) #35	MGP_SPRETEiJ_G0019565 ##33	Zfp65 (MGP_SPRETEiJ_G0019564) #37	MGP_SPRETEiJ_G0019563
Ryukyu mouse	MODERN SPECIES	4	Nkd2 (MGP_CAROLIEiJ_G0018709) #8	Slc12a7 (MGP_CAROLIEiJ_G0018708) #9	Slc6a19 (MGP_CAROLIEiJ_G0018707) #10	Slc6a18 (MGP_CAROLIEiJ_G0018706) #11	Tert (MGP_CAROLIEiJ_G0018705) #12	Clptm1l (MGP_CAROLIEiJ_G0018704) #13	Slc6a3 (MGP_CAROLIEiJ_G0018703) #14	Lpcat1 (MGP_CAROLIEiJ_G0018702) #15	Mrpl36 (MGP_CAROLIEiJ_G0018701) #16	Ndufs6 (MGP_CAROLIEiJ_G0018700) #17	Irx4 (MGP_CAROLIEiJ_G0018699) #18	Irx2 (MGP_CAROLIEiJ_G0018698) #19	Irx1 (MGP_CAROLIEiJ_G0018697) #20	MGP_CAROLIEiJ_G0018696	Adamts16 (MGP_CAROLIEiJ_G0018695) #21	Ice1 (MGP_CAROLIEiJ_G0018694) #22	MGP_CAROLIEiJ_G0018693	Ube2ql1 (MGP_CAROLIEiJ_G0018692) #24	Srd5a1 (MGP_CAROLIEiJ_G0018691) #25	Nsun2 (MGP_CAROLIEiJ_G0018690) #26	Tent4a (MGP_CAROLIEiJ_G0018689) #27	Adcy2 (MGP_CAROLIEiJ_G0018688) #28	Cfap90 (MGP_CAROLIEiJ_G0018687) #29	Fastkd3 (MGP_CAROLIEiJ_G0018686) #30	Mtrr (MGP_CAROLIEiJ_G0018685) #31	BC048507 (MGP_CAROLIEiJ_G0018684) #32	Zfp493 (MGP_CAROLIEiJ_G0018683) #35	Zfp85 (MGP_CAROLIEiJ_G0018682) #36	MGP_CAROLIEiJ_G0018681	MGP_CAROLIEiJ_G0018680 #37	Zfp729a (MGP_CAROLIEiJ_G0018679)
Shrew mouse	MODERN SPECIES	2	Nkd2 (MGP_PahariEiJ_G0015790) #8	Slc12a7 (MGP_PahariEiJ_G0015789) #9	Slc6a19 (MGP_PahariEiJ_G0015788) #10	Slc6a18 (MGP_PahariEiJ_G0015787) #11	Tert (MGP_PahariEiJ_G0015786) #12	Clptm1l (MGP_PahariEiJ_G0015785) #13	Slc6a3 (MGP_PahariEiJ_G0015784) #14	Lpcat1 (MGP_PahariEiJ_G0015783) #15	Mrpl36 (MGP_PahariEiJ_G0015782) #16	Ndufs6 (MGP_PahariEiJ_G0015781) #17	Irx4 (MGP_PahariEiJ_G0015780) #18	Irx2 (MGP_PahariEiJ_G0015779) #19	Irx1 (MGP_PahariEiJ_G0015778) #20	MGP_PahariEiJ_G0015777	Adamts16 (MGP_PahariEiJ_G0015776) #21	Ice1 (MGP_PahariEiJ_G0015775) #22	MGP_PahariEiJ_G0015774	Ube2ql1 (MGP_PahariEiJ_G0015773) #24	Srd5a1 (MGP_PahariEiJ_G0015772) #25	Nsun2 (MGP_PahariEiJ_G0015771) #26	Tent4a (MGP_PahariEiJ_G0015770) #27	Adcy2 (MGP_PahariEiJ_G0015769) #28	Cfap90 (MGP_PahariEiJ_G0015768) #29	Fastkd3 (MGP_PahariEiJ_G0015767) #30	Mtrr (MGP_PahariEiJ_G0015766) #31	BC048507 (MGP_PahariEiJ_G0015765) #32	MGP_PahariEiJ_G0015764 #34	MGP_PahariEiJ_G0015763 #34	Zfp493 (MGP_PahariEiJ_G0015762) #35	MGP_PahariEiJ_G0015761 #37	Zfp729a (MGP_PahariEiJ_G0015760)