Bilateria	ANCESTRAL SPECIES																	ENSGT00950000183199 #22
Chordata	ANCESTRAL SPECIES																	ENSGT00950000183199 #22
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Gnathostomata	ANCESTRAL SPECIES	415															ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29
Euteleostomi	ANCESTRAL SPECIES	144			ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00390000010866 #15	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b
Sarcopterygii	ANCESTRAL SPECIES	169				ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b
Tetrapoda	ANCESTRAL SPECIES	97				ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Mammalia	ANCESTRAL SPECIES	65	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Theria	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Primates	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35
Vervet Monkey	MODERN SPECIES	23	NKD2 (ENSCSAG00000017405) #7	SLC12A7 (ENSCSAG00000017399) #8	SLC6A19 (ENSCSAG00000017393) #9	SLC6A18 (ENSCSAG00000017392) #10	TERT (ENSCSAG00000017381) #11	CLPTM1L (ENSCSAG00000017368) #12	SLC6A3 (ENSCSAG00000017367) #13	LPCAT1 (ENSCSAG00000017363) #14	MRPL36 (ENSCSAG00000018986) #15	NDUFS6 (ENSCSAG00000017360) #16	IRX4 (ENSCSAG00000017357) #17	IRX2 (ENSCSAG00000017353) #18	ENSCSAG00000017351 #19	IRX1 (ENSCSAG00000017349) #20	ADAMTS16 (ENSCSAG00000017347) #21	ICE1 (ENSCSAG00000017344) #22	MED10 (ENSCSAG00000017342) #23	UBE2QL1 (ENSCSAG00000017341) #24	NSUN2 (ENSCSAG00000017339) #25	SRD5A1 (ENSCSAG00000017337) #26	TENT4A (ENSCSAG00000017336) #27	ADCY2 (ENSCSAG00000017334) #28	CFAP90 (ENSCSAG00000017332) #29	FASTKD3 (ENSCSAG00000017331) #30	MTRR (ENSCSAG00000017329) #31	SEMA5A (ENSCSAG00000017328) #32	TAS2R1 (ENSCSAG00000018987) #33	ATPSCKMT (ENSCSAG00000017326) #34	CCT5 (ENSCSAG00000017323) #35	CMBL (ENSCSAG00000017321) #36	MARCHF6 (ENSCSAG00000017319) #37
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00960000188468	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a.k.a #25	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00960000188468	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.k.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00960000188468	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT01100000263493.a.b.a.b.a.b.a.a.a.a.b	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a.k.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36
Rhesus	MODERN SPECIES	16	SLC6A18 (ENSMMUG00000010938) #10	TERT (ENSMMUG00000010940) #11	CLPTM1L (ENSMMUG00000005193) #12	SLC6A3 (ENSMMUG00000005198) #13	LPCAT1 (ENSMMUG00000005199) #14	ENSMMUG00000059497	MRPL36 (ENSMMUG00000004451) #15	NDUFS6 (ENSMMUG00000004447) #16	IRX4 (ENSMMUG00000004220) #17	ENSMMUG00000057427	IRX2 (ENSMMUG00000005802) #18	ENSMMUG00000015889 #19	ENSMMUG00000050148	IRX1 (ENSMMUG00000002613) #20	ADAMTS16 (ENSMMUG00000019205) #21	ICE1 (ENSMMUG00000001063) #22	ENSMMUG00000064022	MED10 (ENSMMUG00000051644) #23	UBE2QL1 (ENSMMUG00000055877) #24	NSUN2 (ENSMMUG00000002561) #25	SRD5A1 (ENSMMUG00000013186) #26	TENT4A (ENSMMUG00000013189) #27	ENSMMUG00000058512	ENSMMUG00000063097	ADCY2 (ENSMMUG00000018742) #28	CFAP90 (ENSMMUG00000018745) #29	FASTKD3 (ENSMMUG00000018746) #30	MTRR (ENSMMUG00000018747) #31	SEMA5A (ENSMMUG00000020160) #32	TAS2R1 (ENSMMUG00000058066) #33	ENSMMUG00000064218
Crab-eating macaque	MODERN SPECIES	16	TERT (ENSMFAG00000033142) #11	CLPTM1L (ENSMFAG00000039815) #12	ENSMFAG00000065048	SLC6A3 (ENSMFAG00000003977) #13	ENSMFAG00000064340	ENSMFAG00000047980	ENSMFAG00000049680 #15	NDUFS6 (ENSMFAG00000032708) #16	IRX4 (ENSMFAG00000044841) #17	IRX2 (ENSMFAG00000064595) #18	ENSMFAG00000047364	ENSMFAG00000055380	IRX1 (ENSMFAG00000001989) #20	ENSMFAG00000052395	ADAMTS16 (ENSMFAG00000000579) #21	ICE1 (ENSMFAG00000037172) #22	MED10 (ENSMFAG00000036824) #23	ENSMFAG00000054504	UBE2QL1 (ENSMFAG00000050565) #24	NSUN2 (ENSMFAG00000045240) #25	SRD5A1 (ENSMFAG00000002749) #26	TENT4A (ENSMFAG00000038658) #27	ENSMFAG00000056143	ENSMFAG00000060338	ENSMFAG00000056296	ADCY2 (ENSMFAG00000001655) #28	ENSMFAG00000051771	CFAP90 (ENSMFAG00000036254) #29	FASTKD3 (ENSMFAG00000040312) #30	MTRR (ENSMFAG00000036712) #31	SEMA5A (ENSMFAG00000038895) #32
Pig-tailed macaque	MODERN SPECIES	156													IRX1 (ENSMNEG00000030402) #20	ENSMNEG00000008964	ADAMTS16 (ENSMNEG00000038384) #21	ICE1 (ENSMNEG00000035013) #22	MED10 (ENSMNEG00000030169) #23	UBE2QL1 (ENSMNEG00000041286) #24	ENSMNEG00000037437	NSUN2 (ENSMNEG00000033485) #25	SRD5A1 (ENSMNEG00000040802) #26	TENT4A (ENSMNEG00000029090) #27	ADCY2 (ENSMNEG00000045116) #28	CFAP90 (ENSMNEG00000036392) #29	FASTKD3 (ENSMNEG00000017265) #30	MTRR (ENSMNEG00000043016) #31	SEMA5A (ENSMNEG00000043946) #32	ENSMNEG00000041629	ATPSCKMT (ENSMNEG00000029572) #34	CCT5 (ENSMNEG00000037967) #35	CMBL (ENSMNEG00000015077) #36
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000153875.c	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00960000188468	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36
Olive baboon	MODERN SPECIES	15	SLC6A18 (ENSPANG00000014913) #10	SLC6A19 (ENSPANG00000012179) #9	SLC12A7 (ENSPANG00000025613) #8	NKD2 (ENSPANG00000012309) #7	TRIP13 (ENSPANG00000020838)	BRD9 (ENSPANG00000004217)	ENSPANG00000023865	MRPL36 (ENSPANG00000046315) #15	NDUFS6 (ENSPANG00000021407) #16	IRX4 (ENSPANG00000014386) #17	ENSPANG00000039393	IRX2 (ENSPANG00000003730) #18	ENSPANG00000004028 #19	IRX1 (ENSPANG00000019076) #20	ADAMTS16 (ENSPANG00000014911) #21	ICE1 (ENSPANG00000050694) #22	MED10 (ENSPANG00000016714) #23	UBE2QL1 (ENSPANG00000015779) #24	NSUN2 (ENSPANG00000004215) #25	SRD5A1 (ENSPANG00000010793) #26	TENT4A (ENSPANG00000004005) #27	ADCY2 (ENSPANG00000014159) #28	CFAP90 (ENSPANG00000003028) #29	FASTKD3 (ENSPANG00000004214) #30	MTRR (ENSPANG00000014385) #31	ENSPANG00000039496	SEMA5A (ENSPANG00000012025) #32	TAS2R1 (ENSPANG00000047467) #33	ATPSCKMT (ENSPANG00000015778) #34	CCT5 (ENSPANG00000006999) #35	CMBL (ENSPANG00000004379) #36
Cercopithecinae_d	ANCESTRAL SPECIES	117		ENSGT00940000161608.n	ENSGT00940000153875.c	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00910000147919	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36
Drill	MODERN SPECIES	1627												NDUFS6 (ENSMLEG00000031436) #16	IRX4 (ENSMLEG00000008142) #17	ENSMLEG00000035820	ADAMTS16 (ENSMLEG00000034561) #21	ICE1 (ENSMLEG00000033241) #22	MED10 (ENSMLEG00000032308) #23	UBE2QL1 (ENSMLEG00000031870) #24	ENSMLEG00000031622	NSUN2 (ENSMLEG00000017173) #25	SRD5A1 (ENSMLEG00000031030) #26	TENT4A (ENSMLEG00000030994) #27	ENSMLEG00000030823
Sooty mangabey	MODERN SPECIES	651		ENSCATG00000034475	TPPP (ENSCATG00000044991)	CEP72 (ENSCATG00000032209)	SLC9A3 (ENSCATG00000039469)	EXOC3 (ENSCATG00000009813)	AHRR (ENSCATG00000044957)	PDCD6 (ENSCATG00000043812)	NDUFS6 (ENSCATG00000032465) #16	IRX4 (ENSCATG00000031325) #17	IRX2 (ENSCATG00000007699) #18	ENSCATG00000003877 #19	IRX1 (ENSCATG00000039676) #20	ENSCATG00000015549	ADAMTS16 (ENSCATG00000010955) #21	ICE1 (ENSCATG00000039347) #22	MED10 (ENSCATG00000041948) #23	UBE2QL1 (ENSCATG00000032120) #24	ENSCATG00000029481	ENSCATG00000045020 #25	SRD5A1 (ENSCATG00000031904) #26	TENT4A (ENSCATG00000034531) #27	ENSCATG00000042677	ADCY2 (ENSCATG00000033939) #28	CFAP90 (ENSCATG00000036277) #29	FASTKD3 (ENSCATG00000028957) #30	MTRR (ENSCATG00000045027) #31	SEMA5A (ENSCATG00000042404) #32	ENSCATG00000029390	ATPSCKMT (ENSCATG00000040712) #34	CCT5 (ENSCATG00000030742) #35
Rhinopithecus	ANCESTRAL SPECIES	309									ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31
Black snub-nosed monkey	MODERN SPECIES	2428																ICE1 (ENSRBIG00000027772) #22	MED10 (ENSRBIG00000042305) #23	UBE2QL1 (ENSRBIG00000031668) #24	ENSRBIG00000036497	NSUN2 (ENSRBIG00000035794) #25	SRD5A1 (ENSRBIG00000035766) #26
Golden snub-nosed monkey	MODERN SPECIES	1911										IRX4 (ENSRROG00000038516) #17	IRX2 (ENSRROG00000029509) #18	ENSRROG00000031597 #19	IRX1 (ENSRROG00000027117) #20	ENSRROG00000030016	ADAMTS16 (ENSRROG00000030301) #21	ICE1 (ENSRROG00000031153) #22	MED10 (ENSRROG00000032049) #23	UBE2QL1 (ENSRROG00000030330) #24	ENSRROG00000032289	NSUN2 (ENSRROG00000035277) #25	ENSRROG00000039857
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.i.a #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.i.a #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Pan	ANCESTRAL SPECIES	21	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531.g #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.i.a #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00890000139491.f	ENSGT00940000160429 #20	ENSGT00910000147015	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988.u.b #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Chimpanzee	MODERN SPECIES	18	ENSPTRG00000044900 #11	TERT (ENSPTRG00000016696) #11	SLC6A3 (ENSPTRG00000016699) #13	ENSPTRG00000045264	LPCAT1 (ENSPTRG00000016701) #14	ENSPTRG00000051244	MRPL36 (ENSPTRG00000016705) #15	NDUFS6 (ENSPTRG00000016706) #16	IRX4 (ENSPTRG00000046893) #17	IRX2 (ENSPTRG00000016708) #18	IRX2-DT (ENSPTRG00000028783) #19	ENSPTRG00000050428	IRX1 (ENSPTRG00000016709) #20	ENSPTRG00000048810	ADAMTS16 (ENSPTRG00000016710) #21	ICE1 (ENSPTRG00000016711) #22	MED10 (ENSPTRG00000016713) #23	UBE2QL1 (ENSPTRG00000033811) #24	NSUN2 (ENSPTRG00000016715) #25	SRD5A1 (ENSPTRG00000016716) #26	TENT4A (ENSPTRG00000016717) #27	ENSPTRG00000051937	ADCY2 (ENSPTRG00000049665) #28	CFAP90 (ENSPTRG00000034032) #29	FASTKD3 (ENSPTRG00000016720) #30	MTRR (ENSPTRG00000016721) #31	SEMA5A (ENSPTRG00000016722) #32	TAS2R1 (ENSPTRG00000016723) #33	ATPSCKMT (ENSPTRG00000016724) #34	CCT5 (ENSPTRG00000016725) #35	CMBL (ENSPTRG00000045109) #36
Bonobo	MODERN SPECIES	18	SLC12A7 (ENSPPAG00000029396) #8	SLC6A19 (ENSPPAG00000038033) #9	SLC6A18 (ENSPPAG00000031319) #10	TERT (ENSPPAG00000029560) #11	CLPTM1L (ENSPPAG00000015621) #12	SLC6A3 (ENSPPAG00000027557) #13	LPCAT1 (ENSPPAG00000041910) #14	MRPL36 (ENSPPAG00000012362) #15	ENSPPAG00000038799 #16	IRX4 (ENSPPAG00000008767) #17	ENSPPAG00000035929 #19	ENSPPAG00000031042	IRX1 (ENSPPAG00000038233) #20	ENSPPAG00000039847	ADAMTS16 (ENSPPAG00000041798) #21	ICE1 (ENSPPAG00000039831) #22	MED10 (ENSPPAG00000031009) #23	NSUN2 (ENSPPAG00000036124) #25	SRD5A1 (ENSPPAG00000038450) #26	ENSPPAG00000034356 #27	ADCY2 (ENSPPAG00000035118) #28	CFAP90 (ENSPPAG00000041883) #29	FASTKD3 (ENSPPAG00000036254) #30	MTRR (ENSPPAG00000043987) #31	SEMA5A (ENSPPAG00000043389) #32	TAS2R1 (ENSPPAG00000010439) #33	ATPSCKMT (ENSPPAG00000042235) #34	CCT5 (ENSPPAG00000029058) #35	CMBL (ENSPPAG00000033069) #36	MARCHF6 (ENSPPAG00000036651) #37	ROPN1L (ENSPPAG00000027569)
Human	MODERN SPECIES	17	TRIP13 (ENSG00000071539)	NKD2 (ENSG00000145506) #7	SLC12A7 (ENSG00000113504) #8	SLC6A19 (ENSG00000174358) #9	SLC6A18 (ENSG00000164363) #10	TERT (ENSG00000164362) #11	CLPTM1L (ENSG00000049656) #12	SLC6A3 (ENSG00000142319) #13	LPCAT1 (ENSG00000153395) #14	MRPL36 (ENSG00000171421) #15	NDUFS6 (ENSG00000145494) #16	IRX4 (ENSG00000113430) #17	IRX2 (ENSG00000170561) #18	IRX1 (ENSG00000170549) #20	ADAMTS16 (ENSG00000145536) #21	ICE1 (ENSG00000164151) #22	MED10 (ENSG00000133398) #23	UBE2QL1 (ENSG00000215218) #24	NSUN2 (ENSG00000037474) #25	SRD5A1 (ENSG00000145545) #26	TENT4A (ENSG00000112941) #27	ADCY2 (ENSG00000078295) #28	CFAP90 (ENSG00000215217) #29	MTRR (ENSG00000124275) #31	FASTKD3 (ENSG00000124279) #30	SEMA5A (ENSG00000112902) #32	TAS2R1 (ENSG00000169777) #33	ATPSCKMT (ENSG00000150756) #34	CCT5 (ENSG00000150753) #35	CMBL (ENSG00000164237) #36	MARCHF6 (ENSG00000145495) #37
Gorilla	MODERN SPECIES	8	ENSGGOG00000038696 #10	TERT (ENSGGOG00000002607) #11	CLPTM1L (ENSGGOG00000015622) #12	SLC6A3 (ENSGGOG00000015631) #13	LPCAT1 (ENSGGOG00000015639) #14	ENSGGOG00000016949 #15	NDUFS6 (ENSGGOG00000016951) #16	ENSGGOG00000039292 #17	IRX2 (ENSGGOG00000015712) #18	ENSGGOG00000015708 #19	ENSGGOG00000040574	ENSGGOG00000042850 #20	ENSGGOG00000042745 #20	ENSGGOG00000039993	ADAMTS16 (ENSGGOG00000014865) #21	ICE1 (ENSGGOG00000025867) #22	MED10 (ENSGGOG00000003086) #23	UBE2QL1 (ENSGGOG00000024242) #24	NSUN2 (ENSGGOG00000016583) #25	SRD5A1 (ENSGGOG00000016593) #26	TENT4A (ENSGGOG00000013866) #27	ENSGGOG00000025545	ENSGGOG00000043809	ADCY2 (ENSGGOG00000011188) #28	CFAP90 (ENSGGOG00000011202) #29	FASTKD3 (ENSGGOG00000015994) #30	MTRR (ENSGGOG00000000958) #31	SEMA5A (ENSGGOG00000011428) #32	TAS2R1 (ENSGGOG00000013791) #33	ATPSCKMT (ENSGGOG00000014109) #34	CCT5 (ENSGGOG00000024064) #35
Orangutan	MODERN SPECIES	18	SLC6A19 (ENSPPYG00000015313) #9	SLC6A18 (ENSPPYG00000015314) #10	ENSPPYG00000015315 #11	ENSPPYG00000039637 #11	CLPTM1L (ENSPPYG00000015316) #12	SLC6A3 (ENSPPYG00000015318) #13	LPCAT1 (ENSPPYG00000015319) #14	ENSPPYG00000031434	MRPL36 (ENSPPYG00000015322) #15	ENSPPYG00000015323 #16	IRX4 (ENSPPYG00000015324) #17	IRX2 (ENSPPYG00000015325) #18	ENSPPYG00000015326 #19	ENSPPYG00000015327 #20	ADAMTS16 (ENSPPYG00000015328) #21	ICE1 (ENSPPYG00000015329) #22	MED10 (ENSPPYG00000015330) #23	UBE2QL1 (ENSPPYG00000015331) #24	NSUN2 (ENSPPYG00000015332) #25	SRD5A1 (ENSPPYG00000031135) #26	TENT4A (ENSPPYG00000015334) #27	ADCY2 (ENSPPYG00000015335) #28	ENSPPYG00000015336 #29	FASTKD3 (ENSPPYG00000015337) #30	MTRR (ENSPPYG00000015338) #31	SEMA5A (ENSPPYG00000015339) #32	TAS2R1 (ENSPPYG00000015340) #33	ATPSCKMT (ENSPPYG00000015341) #34	CCT5 (ENSPPYG00000015342) #35	CMBL (ENSPPYG00000015343) #36	MARCHF6 (ENSPPYG00000015344) #37
Gibbon	MODERN SPECIES	21	ENSNLEG00000011012 #7	SLC12A7 (ENSNLEG00000011016) #8	SLC6A19 (ENSNLEG00000026638) #9	SLC6A18 (ENSNLEG00000011105) #10	TERT (ENSNLEG00000011118) #11	CLPTM1L (ENSNLEG00000011133) #12	SLC6A3 (ENSNLEG00000011157) #13	LPCAT1 (ENSNLEG00000011167) #14	MRPL36 (ENSNLEG00000011197) #15	ENSNLEG00000011199 #16	ENSNLEG00000011213 #17	IRX2 (ENSNLEG00000011219) #18	ENSNLEG00000011229 #19	ENSNLEG00000027652	ADAMTS16 (ENSNLEG00000011241) #21	ICE1 (ENSNLEG00000011296) #22	MED10 (ENSNLEG00000034999) #23	NSUN2 (ENSNLEG00000011344) #25	ENSNLEG00000011414 #26	TENT4A (ENSNLEG00000011434) #27	ADCY2 (ENSNLEG00000011468) #28	CFAP90 (ENSNLEG00000011506) #29	FASTKD3 (ENSNLEG00000011510) #30	MTRR (ENSNLEG00000011522) #31	SEMA5A (ENSNLEG00000011566) #32	ATPSCKMT (ENSNLEG00000027427) #34	CCT5 (ENSNLEG00000032559) #35	CMBL (ENSNLEG00000011601) #36	MARCHF6 (ENSNLEG00000011608) #37	ROPN1L (ENSNLEG00000011687)	ENSNLEG00000032298
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183.l #36	ENSGT00940000155171.a.b #37
Cebidae	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183.l #36	ENSGT00940000155171.a.b #37
Cebidae_a	ANCESTRAL SPECIES	82	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183.l #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Capuchin	MODERN SPECIES	185													IRX2 (ENSCCAG00000024198) #18	IRX1 (ENSCCAG00000033188) #20	ADAMTS16 (ENSCCAG00000027839) #21	ICE1 (ENSCCAG00000027588) #22	MED10 (ENSCCAG00000034010) #23	UBE2QL1 (ENSCCAG00000021337) #24	ENSCCAG00000025648 #25	SRD5A1 (ENSCCAG00000026779) #26	TENT4A (ENSCCAG00000006730) #27
Bolivian squirrel monkey	MODERN SPECIES	92	ENSSBOG00000025272	BRD9 (ENSSBOG00000003529)	TRIP13 (ENSSBOG00000026544)	NKD2 (ENSSBOG00000027973) #7	SLC12A7 (ENSSBOG00000021997) #8	SLC6A19 (ENSSBOG00000024736) #9	SLC6A18 (ENSSBOG00000025040) #10	TERT (ENSSBOG00000030569) #11	CLPTM1L (ENSSBOG00000027261) #12	SLC6A3 (ENSSBOG00000018794) #13	LPCAT1 (ENSSBOG00000021403) #14	NDUFS6 (ENSSBOG00000029679) #16	IRX4 (ENSSBOG00000035465) #17	IRX1 (ENSSBOG00000031823) #20	ADAMTS16 (ENSSBOG00000031786) #21	ICE1 (ENSSBOG00000018773) #22	MED10 (ENSSBOG00000030219) #23	UBE2QL1 (ENSSBOG00000025393) #24	NSUN2 (ENSSBOG00000035262) #25	SRD5A1 (ENSSBOG00000032790) #26	TENT4A (ENSSBOG00000035549) #27	ADCY2 (ENSSBOG00000025740) #28	CFAP90 (ENSSBOG00000024374) #29	FASTKD3 (ENSSBOG00000020653) #30	MTRR (ENSSBOG00000028252) #31	SEMA5A (ENSSBOG00000032395) #32	ATPSCKMT (ENSSBOG00000021099) #34	CCT5 (ENSSBOG00000022734) #35	CMBL (ENSSBOG00000021093) #36	MARCHF6 (ENSSBOG00000020372) #37	ROPN1L (ENSSBOG00000021335)
Marmoset	MODERN SPECIES	11	NKD2 (ENSCJAG00000043259) #7	SLC12A7 (ENSCJAG00000077601) #8	SLC6A19 (ENSCJAG00000011196) #9	SLC6A18 (ENSCJAG00000036709) #10	TERT (ENSCJAG00000048026) #11	ENSCJAG00000047667 #12	SLC6A3 (ENSCJAG00000011089) #13	LPCAT1 (ENSCJAG00000011062) #14	ENSCJAG00000083587 #15	ENSCJAG00000075297 #16	IRX4 (ENSCJAG00000009376) #17	IRX2 (ENSCJAG00000008516) #18	IRX1 (ENSCJAG00000039020) #20	ENSCJAG00000086287	ADAMTS16 (ENSCJAG00000008588) #21	ICE1 (ENSCJAG00000008637) #22	MED10 (ENSCJAG00000008674) #23	UBE2QL1 (ENSCJAG00000008686) #24	NSUN2 (ENSCJAG00000008689) #25	SRD5A1 (ENSCJAG00000008724) #26	TENT4A (ENSCJAG00000008742) #27	ENSCJAG00000087014	ENSCJAG00000084205	ADCY2 (ENSCJAG00000008816) #28	CFAP90 (ENSCJAG00000076097) #29	FASTKD3 (ENSCJAG00000008921) #30	MTRR (ENSCJAG00000008934) #31	SEMA5A (ENSCJAG00000008962) #32	TAS2R1 (ENSCJAG00000077757) #33	ATPSCKMT (ENSCJAG00000070705) #34	ENSCJAG00000008977 #35
Mas night monkey	MODERN SPECIES	837	NKD2 (ENSANAG00000018792) #7	SLC12A7 (ENSANAG00000033651) #8	SLC6A19 (ENSANAG00000030219) #9	SLC6A18 (ENSANAG00000031192) #10	TERT (ENSANAG00000032128) #11	CLPTM1L (ENSANAG00000027142) #12	SLC6A3 (ENSANAG00000027816) #13	LPCAT1 (ENSANAG00000027756) #14	NDUFS6 (ENSANAG00000009591) #16	IRX4 (ENSANAG00000023256) #17	IRX2 (ENSANAG00000023050) #18	ENSANAG00000036927	ENSANAG00000019516	IRX1 (ENSANAG00000032866) #20	ADAMTS16 (ENSANAG00000025438) #21	ICE1 (ENSANAG00000023554) #22	ENSANAG00000018766	MED10 (ENSANAG00000030701) #23	UBE2QL1 (ENSANAG00000025279) #24	NSUN2 (ENSANAG00000034451) #25	SRD5A1 (ENSANAG00000020870) #26	TENT4A (ENSANAG00000037806) #27	ADCY2 (ENSANAG00000023768) #28	CFAP90 (ENSANAG00000032842) #29	FASTKD3 (ENSANAG00000021217) #30	MTRR (ENSANAG00000023571) #31	SEMA5A (ENSANAG00000021223) #32	ATPSCKMT (ENSANAG00000022943) #34	CCT5 (ENSANAG00000026097) #35	CMBL (ENSANAG00000029875) #36	MARCHF6 (ENSANAG00000037794) #37
Tarsier	MODERN SPECIES	3067															ADAMTS16 (ENSTSYG00000004013) #21	ENSTSYG00000035233 #22
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Lemuriformes	ANCESTRAL SPECIES	47	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Lemuriformes_a	ANCESTRAL SPECIES	135	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31
Greater bamboo lemur	MODERN SPECIES	11	ENSPSMG00000010472	NKD2 (ENSPSMG00000010442) #7	SLC12A7 (ENSPSMG00000010422) #8	SLC6A19 (ENSPSMG00000010402) #9	SLC6A18 (ENSPSMG00000010391) #10	ENSPSMG00000010376 #11	ENSPSMG00000010372	CLPTM1L (ENSPSMG00000010152) #12	SLC6A3 (ENSPSMG00000009991) #13	LPCAT1 (ENSPSMG00000009909) #14	NDUFS6 (ENSPSMG00000009866) #16	IRX4 (ENSPSMG00000009857) #17	IRX2 (ENSPSMG00000009849) #18	IRX1 (ENSPSMG00000009843) #20	ADAMTS16 (ENSPSMG00000009836) #21	ICE1 (ENSPSMG00000009793) #22	MED10 (ENSPSMG00000009767) #23	UBE2QL1 (ENSPSMG00000009761) #24	NSUN2 (ENSPSMG00000009727) #25	SRD5A1 (ENSPSMG00000009616) #26	TENT4A (ENSPSMG00000009588) #27	ADCY2 (ENSPSMG00000009550) #28	ENSPSMG00000009525 #29	FASTKD3 (ENSPSMG00000009521) #30	MTRR (ENSPSMG00000009513) #31	ENSPSMG00000009491 #32
Coquerels sifaka	MODERN SPECIES	515															ADAMTS16 (ENSPCOG00000015056) #21	ICE1 (ENSPCOG00000015680) #22	MED10 (ENSPCOG00000000065) #23	UBE2QL1 (ENSPCOG00000005715) #24	NSUN2 (ENSPCOG00000012979) #25	SRD5A1 (ENSPCOG00000001310) #26	ENSPCOG00000025593	TENT4A (ENSPCOG00000016295) #27
Mouse lemur	MODERN SPECIES	3	BRD9 (ENSMICG00000004306)	TRIP13 (ENSMICG00000028604)	NKD2 (ENSMICG00000029997) #7	SLC12A7 (ENSMICG00000028719) #8	SLC6A19 (ENSMICG00000033849) #9	SLC6A18 (ENSMICG00000010877) #10	TERT (ENSMICG00000010883) #11	CLPTM1L (ENSMICG00000000301) #12	SLC6A3 (ENSMICG00000017612) #13	LPCAT1 (ENSMICG00000032744) #14	NDUFS6 (ENSMICG00000014038) #16	IRX4 (ENSMICG00000029233) #17	IRX2 (ENSMICG00000013531) #18	IRX1 (ENSMICG00000011730) #20	ADAMTS16 (ENSMICG00000010718) #21	ICE1 (ENSMICG00000028221) #22	MED10 (ENSMICG00000013856) #23	UBE2QL1 (ENSMICG00000042851) #24	NSUN2 (ENSMICG00000016549) #25	SRD5A1 (ENSMICG00000016557) #26	TENT4A (ENSMICG00000016562) #27	ADCY2 (ENSMICG00000002952) #28	CFAP90 (ENSMICG00000034745) #29	FASTKD3 (ENSMICG00000002954) #30	MTRR (ENSMICG00000002955) #31	SEMA5A (ENSMICG00000002641) #32	ENSMICG00000010134	ATPSCKMT (ENSMICG00000043453) #34	CCT5 (ENSMICG00000000530) #35	CMBL (ENSMICG00000000533) #36	MARCHF6 (ENSMICG00000010632) #37
Bushbaby	MODERN SPECIES	303														IRX1 (ENSOGAG00000024732) #20	ADAMTS16 (ENSOGAG00000013842) #21	ICE1 (ENSOGAG00000029817) #22	MED10 (ENSOGAG00000005988) #23	UBE2QL1 (ENSOGAG00000032403) #24	NSUN2 (ENSOGAG00000015015) #25	SRD5A1 (ENSOGAG00000015026) #26	TENT4A (ENSOGAG00000015032) #27
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Glires	ANCESTRAL SPECIES	7	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Rodentia	ANCESTRAL SPECIES	7	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Kangaroo rat	MODERN SPECIES	340	Cep72 (ENSDORG00000014412)	Tppp (ENSDORG00000000450)	Zdhhc11 (ENSDORG00000003485)	Brd9 (ENSDORG00000003483)	Trip13 (ENSDORG00000003482)	Nkd2 (ENSDORG00000012275) #7	Slc12a7 (ENSDORG00000012278) #8	Slc6a19 (ENSDORG00000029059) #9	Slc6a18 (ENSDORG00000011176) #10	Clptm1l (ENSDORG00000010439) #12	Slc6a3 (ENSDORG00000001501) #13	Lpcat1 (ENSDORG00000012382) #14	Ndufs6 (ENSDORG00000024296) #16	Irx4 (ENSDORG00000015537) #17	Adamts16 (ENSDORG00000013854) #21	ENSDORG00000025435 #22	ENSDORG00000008413 #23	Ube2ql1 (ENSDORG00000026589) #24	Nsun2 (ENSDORG00000010247) #25	Srd5a1 (ENSDORG00000010248) #26	Tent4a (ENSDORG00000023216) #27	Adcy2 (ENSDORG00000010924) #28	Cfap90 (ENSDORG00000013670) #29	Fastkd3 (ENSDORG00000028341) #30	ENSDORG00000030090 #31	Sema5a (ENSDORG00000009214) #32	Cct5 (ENSDORG00000008787) #35	Cmbl (ENSDORG00000008783) #36	Marchf6 (ENSDORG00000009942) #37	Ropn1l (ENSDORG00000004133)	Dap (ENSDORG00000023386)
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Lesser Egyptian jerboa	MODERN SPECIES	128	Brd9 (ENSJJAG00000001706)	Zdhhc11 (ENSJJAG00000011440)	Tppp (ENSJJAG00000010294)	Cep72 (ENSJJAG00000008837)	Slc9a3 (ENSJJAG00000020607)	ENSJJAG00000020042	ENSJJAG00000017113	ENSJJAG00000015095	Hsd17b4 (ENSJJAG00000013321)	Ccnb1 (ENSJJAG00000007280)	Slc30a5 (ENSJJAG00000000942)	Pik3r1 (ENSJJAG00000020326)	Cd180 (ENSJJAG00000017107)	ENSJJAG00000011406	Adamts16 (ENSJJAG00000019243) #21	ENSJJAG00000010916 #22	ENSJJAG00000009945 #23	Ube2ql1 (ENSJJAG00000018046) #24	ENSJJAG00000017622	Nsun2 (ENSJJAG00000013996) #25	Srd5a1 (ENSJJAG00000009745) #26	Tent4a (ENSJJAG00000007205) #27
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.b.a.a.a.a.a	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	891															Adamts16 (ENSNGAG00000022318) #21	ENSNGAG00000004793 #22	ENSNGAG00000012262	ENSNGAG00000012870	ENSNGAG00000013849 #23	Ube2ql1 (ENSNGAG00000014214) #24	Nsun2 (ENSNGAG00000007424) #25	Srd5a1 (ENSNGAG00000012895) #26	Tent4a (ENSNGAG00000006352) #27	Adcy2 (ENSNGAG00000018235) #28	Cfap90 (ENSNGAG00000001479) #29	Fastkd3 (ENSNGAG00000010644) #30	ENSNGAG00000021798 #31	ENSNGAG00000022210
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.a.c.a	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775.d.a #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.d	ENSGT00940000154251.A	ENSGT00940000155274.a.b.c.a.b.c
Chinese hamster chok1gshd	MODERN SPECIES	1	Slc12a7 (ENSCGRG00001015337) #8	ENSCGRG00001012265	Slc6a19 (ENSCGRG00001011943) #9	Slc6a18 (ENSCGRG00001012926) #10	Tert (ENSCGRG00001012546) #11	Clptm1l (ENSCGRG00001016619) #12	Slc6a3 (ENSCGRG00001006359) #13	Lpcat1 (ENSCGRG00001005110) #14	Mrpl36 (ENSCGRG00001008138) #15	ENSCGRG00001016119 #16	Irx4 (ENSCGRG00001014881) #17	Irx2 (ENSCGRG00001014435) #18	ENSCGRG00001013677	Irx1 (ENSCGRG00001000951) #20	Adamts16 (ENSCGRG00001024673) #21	ENSCGRG00001024420 #22	ENSCGRG00001013263	MED10 (ENSCGRG00001014842) #23	Ube2ql1 (ENSCGRG00001007893) #24	Nsun2 (ENSCGRG00001003947) #25	Srd5a1 (ENSCGRG00001002045) #26	Tent4a (ENSCGRG00001014344) #27	Adcy2 (ENSCGRG00001012614) #28	Cfap90 (ENSCGRG00001012047) #29	Fastkd3 (ENSCGRG00001016248) #30	Mtrr (ENSCGRG00001015919) #31	ENSCGRG00001020262	ENSCGRG00001019143	ENSCGRG00001024688	ENSCGRG00001024555	ENSCGRG00001024303
Golden Hamster	MODERN SPECIES	619	Brd9 (ENSMAUG00000015050)	Trip13 (ENSMAUG00000018209)	Nkd2 (ENSMAUG00000011293) #7	Slc12a7 (ENSMAUG00000001535) #8	Slc6a19 (ENSMAUG00000021816) #9	Slc6a18 (ENSMAUG00000007818) #10	Tert (ENSMAUG00000008230) #11	Clptm1l (ENSMAUG00000011502) #12	Lpcat1 (ENSMAUG00000020192) #14	Ndufs6 (ENSMAUG00000011653) #16	Irx4 (ENSMAUG00000002904) #17	Irx2 (ENSMAUG00000014773) #18	ENSMAUG00000009392	Irx1 (ENSMAUG00000001495) #20	Adamts16 (ENSMAUG00000014925) #21	ENSMAUG00000008753 #22	ENSMAUG00000010296 #23	Ube2ql1 (ENSMAUG00000008423) #24	Nsun2 (ENSMAUG00000014207) #25	Srd5a1 (ENSMAUG00000020995) #26	Tent4a (ENSMAUG00000008017) #27	Adcy2 (ENSMAUG00000014023) #28	Cfap90 (ENSMAUG00000013591) #29	Fastkd3 (ENSMAUG00000016393) #30	Mtrr (ENSMAUG00000010077) #31	ENSMAUG00000014263	ENSMAUG00000019345	ENSMAUG00000016407	ENSMAUG00000016174	ENSMAUG00000016437	ENSMAUG00000014660
Cricetidae_B	ANCESTRAL SPECIES	37	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #32	ENSGT01100000263477.E #33
Prairie vole	MODERN SPECIES	6	Trip13 (ENSMOCG00000001629)	Nkd2 (ENSMOCG00000020604) #7	Slc12a7 (ENSMOCG00000005766) #8	Slc6a19 (ENSMOCG00000022361) #9	Slc6a18 (ENSMOCG00000014604) #10	Tert (ENSMOCG00000002105) #11	Clptm1l (ENSMOCG00000006930) #12	Slc6a3 (ENSMOCG00000000701) #13	Lpcat1 (ENSMOCG00000020107) #14	Mrpl36 (ENSMOCG00000004885) #15	Ndufs6 (ENSMOCG00000020730) #16	Irx4 (ENSMOCG00000003602) #17	Irx2 (ENSMOCG00000002016) #18	Irx1 (ENSMOCG00000001127) #20	Adamts16 (ENSMOCG00000006653) #21	ENSMOCG00000001781 #22	ENSMOCG00000016447	ENSMOCG00000012521 #23	ENSMOCG00000010244 #24	Nsun2 (ENSMOCG00000009613) #25	Srd5a1 (ENSMOCG00000013895) #26	Tent4a (ENSMOCG00000008477) #27	Adcy2 (ENSMOCG00000010329) #28	Cfap90 (ENSMOCG00000004801) #29	Fastkd3 (ENSMOCG00000018808) #30	Mtrr (ENSMOCG00000015617) #31	ENSMOCG00000021801	ENSMOCG00000019063	ENSMOCG00000016464	ENSMOCG00000000172	ENSMOCG00000020149
Northern American deer mouse	MODERN SPECIES	6	Trip13 (ENSPEMG00000006165)	Nkd2 (ENSPEMG00000009852) #7	Slc12a7 (ENSPEMG00000009080) #8	Slc6a19 (ENSPEMG00000016690) #9	Slc6a18 (ENSPEMG00000008103) #10	Tert (ENSPEMG00000013643) #11	Clptm1l (ENSPEMG00000007565) #12	Slc6a3 (ENSPEMG00000017495) #13	Lpcat1 (ENSPEMG00000015897) #14	Mrpl36 (ENSPEMG00000006495) #15	Ndufs6 (ENSPEMG00000012127) #16	Irx4 (ENSPEMG00000007372) #17	Irx2 (ENSPEMG00000000903) #18	Irx1 (ENSPEMG00000016721) #20	Adamts16 (ENSPEMG00000001407) #21	Ice1 (ENSPEMG00000029176) #22	ENSPEMG00000021408 #23	Ube2ql1 (ENSPEMG00000025343) #24	Nsun2 (ENSPEMG00000021790) #25	Srd5a1 (ENSPEMG00000021787) #26	Tent4a (ENSPEMG00000024121) #27	Adcy2 (ENSPEMG00000022387) #28	Cfap90 (ENSPEMG00000026544) #29	Fastkd3 (ENSPEMG00000021202) #30	Mtrr (ENSPEMG00000006807) #31	ENSPEMG00000011535	ENSPEMG00000022570	ENSPEMG00000025284	ENSPEMG00000020980	ENSPEMG00000027706	ENSPEMG00000020934
Murinae	ANCESTRAL SPECIES	39	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a
Mus	ANCESTRAL SPECIES	22	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.m #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b
Mouse	MODERN SPECIES	4	Trip13 (ENSMUSG00000021569)	Nkd2 (ENSMUSG00000021567) #7	Slc12a7 (ENSMUSG00000017756) #8	Slc6a19 (ENSMUSG00000021565) #9	Slc6a18 (ENSMUSG00000021612) #10	Tert (ENSMUSG00000021611) #11	Clptm1l (ENSMUSG00000021610) #12	Slc6a3 (ENSMUSG00000021609) #13	Lpcat1 (ENSMUSG00000021608) #14	Mrpl36 (ENSMUSG00000021607) #15	Ndufs6 (ENSMUSG00000021606) #16	Irx4 (ENSMUSG00000021604) #17	Irx2 (ENSMUSG00000001504) #18	Irx1 (ENSMUSG00000060969) #20	Adamts16 (ENSMUSG00000049538) #21	Ice1 (ENSMUSG00000034525) #22	Med10 (ENSMUSG00000021598)	Ube2ql1 (ENSMUSG00000052981) #24	Srd5a1 (ENSMUSG00000021594) #26	Nsun2 (ENSMUSG00000021595) #25	Tent4a (ENSMUSG00000034575) #27	Adcy2 (ENSMUSG00000021536) #28	Cfap90 (ENSMUSG00000021534) #29	Fastkd3 (ENSMUSG00000021532) #30	Mtrr (ENSMUSG00000034617) #31	BC048507 (ENSMUSG00000064063)	Gm10037 (ENSMUSG00000058246)	Zfp273 (ENSMUSG00000030446)	Zfp493 (ENSMUSG00000090659)	Zfp85 (ENSMUSG00000058331)	Zfp65 (ENSMUSG00000071281)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896.b #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866.m #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b
Steppe mouse	MODERN SPECIES	3330	Slc12a7 (ENSMSIG00000016137) #8	ENSMSIG00000016283	Slc6a19 (ENSMSIG00000016300) #9	Slc6a18 (ENSMSIG00000016330) #10	Tert (ENSMSIG00000016999) #11	Clptm1l (ENSMSIG00000017023) #12	Slc6a3 (ENSMSIG00000017069) #13	Lpcat1 (ENSMSIG00000017129) #14	Mrpl36 (ENSMSIG00000017166) #15	Ndufs6 (ENSMSIG00000017174) #16	Irx4 (ENSMSIG00000017201) #17	Irx2 (ENSMSIG00000017231) #18	Irx1 (ENSMSIG00000017250) #20	ENSMSIG00000017283	Adamts16 (ENSMSIG00000017303) #21	Ice1 (ENSMSIG00000017478) #22	ENSMSIG00000017532	ENSMSIG00000017563 #23	ENSMSIG00000017620 #24	Nsun2 (ENSMSIG00000017636) #25	Srd5a1 (ENSMSIG00000017747) #26	ENSMSIG00000017762 #27	ENSMSIG00000017798
spretus	MODERN SPECIES	4	Nkd2 (MGP_SPRETEiJ_G0019593) #7	Slc12a7 (MGP_SPRETEiJ_G0019592) #8	Slc6a19 (MGP_SPRETEiJ_G0019591) #9	Slc6a18 (MGP_SPRETEiJ_G0019590) #10	Tert (MGP_SPRETEiJ_G0019589) #11	Clptm1l (MGP_SPRETEiJ_G0019588) #12	Slc6a3 (MGP_SPRETEiJ_G0019587) #13	Lpcat1 (MGP_SPRETEiJ_G0019586) #14	Mrpl36 (MGP_SPRETEiJ_G0019585) #15	Ndufs6 (MGP_SPRETEiJ_G0019584) #16	Irx4 (MGP_SPRETEiJ_G0019583) #17	Irx2 (MGP_SPRETEiJ_G0019582) #18	Irx1 (MGP_SPRETEiJ_G0019581) #20	MGP_SPRETEiJ_G0019580	Adamts16 (MGP_SPRETEiJ_G0019579) #21	Ice1 (MGP_SPRETEiJ_G0019578) #22	MGP_SPRETEiJ_G0019577 #23	MGP_SPRETEiJ_G0019576 #24	Srd5a1 (MGP_SPRETEiJ_G0019575) #26	Nsun2 (MGP_SPRETEiJ_G0019574) #25	Tent4a (MGP_SPRETEiJ_G0019573) #27	Adcy2 (MGP_SPRETEiJ_G0019572) #28	Cfap90 (MGP_SPRETEiJ_G0019571) #29	Fastkd3 (MGP_SPRETEiJ_G0019570) #30	Mtrr (MGP_SPRETEiJ_G0019569) #31	BC048507 (MGP_SPRETEiJ_G0019568)	MGP_SPRETEiJ_G0019567	Zfp493 (MGP_SPRETEiJ_G0019566)	MGP_SPRETEiJ_G0019565	Zfp65 (MGP_SPRETEiJ_G0019564)	MGP_SPRETEiJ_G0019563
Ryukyu mouse	MODERN SPECIES	4	Nkd2 (MGP_CAROLIEiJ_G0018709) #7	Slc12a7 (MGP_CAROLIEiJ_G0018708) #8	Slc6a19 (MGP_CAROLIEiJ_G0018707) #9	Slc6a18 (MGP_CAROLIEiJ_G0018706) #10	Tert (MGP_CAROLIEiJ_G0018705) #11	Clptm1l (MGP_CAROLIEiJ_G0018704) #12	Slc6a3 (MGP_CAROLIEiJ_G0018703) #13	Lpcat1 (MGP_CAROLIEiJ_G0018702) #14	Mrpl36 (MGP_CAROLIEiJ_G0018701) #15	Ndufs6 (MGP_CAROLIEiJ_G0018700) #16	Irx4 (MGP_CAROLIEiJ_G0018699) #17	Irx2 (MGP_CAROLIEiJ_G0018698) #18	Irx1 (MGP_CAROLIEiJ_G0018697) #20	MGP_CAROLIEiJ_G0018696	Adamts16 (MGP_CAROLIEiJ_G0018695) #21	Ice1 (MGP_CAROLIEiJ_G0018694) #22	MGP_CAROLIEiJ_G0018693 #23	Ube2ql1 (MGP_CAROLIEiJ_G0018692) #24	Srd5a1 (MGP_CAROLIEiJ_G0018691) #26	Nsun2 (MGP_CAROLIEiJ_G0018690) #25	Tent4a (MGP_CAROLIEiJ_G0018689) #27	Adcy2 (MGP_CAROLIEiJ_G0018688) #28	Cfap90 (MGP_CAROLIEiJ_G0018687) #29	Fastkd3 (MGP_CAROLIEiJ_G0018686) #30	Mtrr (MGP_CAROLIEiJ_G0018685) #31	BC048507 (MGP_CAROLIEiJ_G0018684)	Zfp493 (MGP_CAROLIEiJ_G0018683)	Zfp85 (MGP_CAROLIEiJ_G0018682)	MGP_CAROLIEiJ_G0018681	MGP_CAROLIEiJ_G0018680	Zfp729a (MGP_CAROLIEiJ_G0018679)
Shrew mouse	MODERN SPECIES	2	Nkd2 (MGP_PahariEiJ_G0015790) #7	Slc12a7 (MGP_PahariEiJ_G0015789) #8	Slc6a19 (MGP_PahariEiJ_G0015788) #9	Slc6a18 (MGP_PahariEiJ_G0015787) #10	Tert (MGP_PahariEiJ_G0015786) #11	Clptm1l (MGP_PahariEiJ_G0015785) #12	Slc6a3 (MGP_PahariEiJ_G0015784) #13	Lpcat1 (MGP_PahariEiJ_G0015783) #14	Mrpl36 (MGP_PahariEiJ_G0015782) #15	Ndufs6 (MGP_PahariEiJ_G0015781) #16	Irx4 (MGP_PahariEiJ_G0015780) #17	Irx2 (MGP_PahariEiJ_G0015779) #18	Irx1 (MGP_PahariEiJ_G0015778) #20	MGP_PahariEiJ_G0015777	Adamts16 (MGP_PahariEiJ_G0015776) #21	Ice1 (MGP_PahariEiJ_G0015775) #22	MGP_PahariEiJ_G0015774 #23	Ube2ql1 (MGP_PahariEiJ_G0015773) #24	Srd5a1 (MGP_PahariEiJ_G0015772) #26	Nsun2 (MGP_PahariEiJ_G0015771) #25	Tent4a (MGP_PahariEiJ_G0015770) #27	Adcy2 (MGP_PahariEiJ_G0015769) #28	Cfap90 (MGP_PahariEiJ_G0015768) #29	Fastkd3 (MGP_PahariEiJ_G0015767) #30	Mtrr (MGP_PahariEiJ_G0015766) #31	BC048507 (MGP_PahariEiJ_G0015765)	MGP_PahariEiJ_G0015764	MGP_PahariEiJ_G0015763	Zfp493 (MGP_PahariEiJ_G0015762)	MGP_PahariEiJ_G0015761	Zfp729a (MGP_PahariEiJ_G0015760)
Rat	MODERN SPECIES		Trip13 (ENSRNOG00000015810)	Nkd2 (ENSRNOG00000016103) #7	Slc12a7 (ENSRNOG00000016372) #8	Slc6a19 (ENSRNOG00000026501) #9	Slc6a18 (ENSRNOG00000016253) #10	Tert (ENSRNOG00000025327) #11	Clptm1l (ENSRNOG00000016923) #12	Slc6a3 (ENSRNOG00000017302) #13	Lpcat1 (ENSRNOG00000017930) #14	Mrpl36 (ENSRNOG00000023407) #15	Ndufs6l1 (ENSRNOG00000062531) #16	Irx4 (ENSRNOG00000012720) #17	Irx2 (ENSRNOG00000012742) #18	Irx1 (ENSRNOG00000033609) #20	Adamts16 (ENSRNOG00000016812) #21	Ice1 (ENSRNOG00000023053) #22	Dlat-ps1 (ENSRNOG00000017095)	Med10 (ENSRNOG00000017150) #23	Ube2ql1 (ENSRNOG00000034075) #24	Nsun2 (ENSRNOG00000017254) #25	Srd5a1 (ENSRNOG00000017601) #26	Tent4a (ENSRNOG00000017613) #27	Ap2b1-ps1 (ENSRNOG00000017678)	Adcy2 (ENSRNOG00000032150) #28	Cfap90 (ENSRNOG00000047406) #29	Fastkd3 (ENSRNOG00000027422) #30	Mtrr (ENSRNOG00000017826) #31	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000039877	PIK3R1 (ENSHGLG00000003228)	ENSHGLG00000009915	ENSHGLG00000002541	ENSHGLG00000002279	ENSHGLG00000036757	ENSHGLG00000047986	ENSHGLG00000004377	ENSHGLG00000000292	ENSHGLG00000000046	ENSHGLG00000035273	ENSHGLG00000048969	ENSHGLG00000003987 #18	IRX1 (ENSHGLG00000005060) #20	ADAMTS16 (ENSHGLG00000007184) #21	ICE1 (ENSHGLG00000004659) #22	ENSHGLG00000043670	ENSHGLG00000040324 #23	UBE2QL1 (ENSHGLG00000042708) #24	NSUN2 (ENSHGLG00000013825) #25	ENSHGLG00000018170 #26	TENT4A (ENSHGLG00000033481) #27	ENSHGLG00000016066	ENSHGLG00000040620	ADCY2 (ENSHGLG00000007112) #28	CFAP90 (ENSHGLG00000045658) #29	FASTKD3 (ENSHGLG00000004249) #30	MTRR (ENSHGLG00000005425) #31	SEMA5A (ENSHGLG00000017629) #32	ENSHGLG00000045152 #33	ENSHGLG00000049198 #33
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Guinea pig	MODERN SPECIES	144															ADAMTS16 (ENSCPOG00000009819) #21	ENSCPOG00000039980 #22	MED10 (ENSCPOG00000031737) #23	UBE2QL1 (ENSCPOG00000038178) #24	NSUN2 (ENSCPOG00000008196) #25	SRD5A1 (ENSCPOG00000032112) #26	TENT4A (ENSCPOG00000009006) #27
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Long-tailed chinchilla	MODERN SPECIES	211	BRD9 (ENSCLAG00000005681)	TRIP13 (ENSCLAG00000003450)	NKD2 (ENSCLAG00000003738) #7	SLC12A7 (ENSCLAG00000004556) #8	SLC6A19 (ENSCLAG00000005488) #9	SLC6A18 (ENSCLAG00000004695) #10	TERT (ENSCLAG00000006143) #11	CLPTM1L (ENSCLAG00000006371) #12	SLC6A3 (ENSCLAG00000006703) #13	LPCAT1 (ENSCLAG00000007581) #14	NDUFS6 (ENSCLAG00000007890) #16	IRX4 (ENSCLAG00000013236) #17	IRX2 (ENSCLAG00000010848) #18	IRX1 (ENSCLAG00000011133) #20	ADAMTS16 (ENSCLAG00000011357) #21	ICE1 (ENSCLAG00000006995) #22	MED10 (ENSCLAG00000003135) #23	NSUN2 (ENSCLAG00000003188) #25	SRD5A1 (ENSCLAG00000003581) #26	TENT4A (ENSCLAG00000003733) #27	ADCY2 (ENSCLAG00000004022) #28	CFAP90 (ENSCLAG00000005513) #29	FASTKD3 (ENSCLAG00000005534) #30	MTRR (ENSCLAG00000003599) #31	SEMA5A (ENSCLAG00000003796) #32
Degu	MODERN SPECIES	49	TRIP13 (ENSODEG00000018401)	NKD2 (ENSODEG00000018297) #7	SLC12A7 (ENSODEG00000018252) #8	SLC6A19 (ENSODEG00000018254) #9	SLC6A18 (ENSODEG00000018351) #10	TERT (ENSODEG00000018274) #11	CLPTM1L (ENSODEG00000018435) #12	SLC6A3 (ENSODEG00000018337) #13	LPCAT1 (ENSODEG00000018339) #14	ENSODEG00000018308 #15	NDUFS6 (ENSODEG00000018267) #16	IRX4 (ENSODEG00000018434) #17	IRX2 (ENSODEG00000018250) #18	IRX1 (ENSODEG00000018349) #20	ADAMTS16 (ENSODEG00000018405) #21	ENSODEG00000018278 #22	ENSODEG00000018433	MED10 (ENSODEG00000018285) #23	UBE2QL1 (ENSODEG00000018284) #24	ENSODEG00000018291	NSUN2 (ENSODEG00000018305) #25	SRD5A1 (ENSODEG00000018442) #26	TENT4A (ENSODEG00000018357) #27	ENSODEG00000018283	ADCY2 (ENSODEG00000018279) #28	FASTKD3 (ENSODEG00000018378) #30	ENSODEG00000018330 #31	SEMA5A (ENSODEG00000018380) #32	ENSODEG00000018296	ATPSCKMT (ENSODEG00000018372) #34	ENSODEG00000018260 #35
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Marmotini	ANCESTRAL SPECIES	75	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Marmotini_b	ANCESTRAL SPECIES	157													ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Arctic ground squirrel	MODERN SPECIES	255												IRX2 (ENSUPAG00010016403) #18	IRX1 (ENSUPAG00010016392) #20	ENSUPAG00010016375	ADAMTS16 (ENSUPAG00010016298) #21	ICE1 (ENSUPAG00010016270) #22
Squirrel	MODERN SPECIES	234													IRX2 (ENSSTOG00000003533) #18	IRX1 (ENSSTOG00000020840) #20	ADAMTS16 (ENSSTOG00000004197) #21	ICE1 (ENSSTOG00000028724) #22	NSUN2 (ENSSTOG00000004090) #25	TENT4A (ENSSTOG00000004554) #27
Alpin marmot	MODERN SPECIES	27	TRIP13 (ENSMMMG00000016193)	NKD2 (ENSMMMG00000016197) #7	SLC12A7 (ENSMMMG00000016228) #8	SLC6A19 (ENSMMMG00000016250) #9	SLC6A18 (ENSMMMG00000016257) #10	TERT (ENSMMMG00000016292) #11	CLPTM1L (ENSMMMG00000016350) #12	SLC6A3 (ENSMMMG00000016359) #13	LPCAT1 (ENSMMMG00000016379) #14	ENSMMMG00000016387 #15	NDUFS6 (ENSMMMG00000016391) #16	IRX4 (ENSMMMG00000016398) #17	IRX2 (ENSMMMG00000016418) #18	IRX1 (ENSMMMG00000016428) #20	ADAMTS16 (ENSMMMG00000016445) #21	ICE1 (ENSMMMG00000016467) #22	MED10 (ENSMMMG00000016704) #23	UBE2QL1 (ENSMMMG00000016713) #24	NSUN2 (ENSMMMG00000016722) #25	ENSMMMG00000016735 #26	TENT4A (ENSMMMG00000016743) #27	ADCY2 (ENSMMMG00000016776) #28	CFAP90 (ENSMMMG00000016801) #29	FASTKD3 (ENSMMMG00000016807) #30	MTRR (ENSMMMG00000016810) #31	ENSMMMG00000016828	SEMA5A (ENSMMMG00000016842) #32	TAS2R1 (ENSMMMG00000016854) #33	ATPSCKMT (ENSMMMG00000016857) #34	CCT5 (ENSMMMG00000016876) #35	CMBL (ENSMMMG00000016882) #36
Eurasian red squirrel	MODERN SPECIES	15	SLC12A7 (ENSSVLG00005007858) #8	SLC6A19 (ENSSVLG00005007759) #9	SLC6A18 (ENSSVLG00005007675) #10	TERT (ENSSVLG00005007516) #11	CLPTM1L (ENSSVLG00005007406) #12	SLC6A3 (ENSSVLG00005007330) #13	ENSSVLG00005007261 #14	ENSSVLG00005007224 #15	NDUFS6 (ENSSVLG00005007209) #16	IRX4 (ENSSVLG00005007188) #17	IRX2 (ENSSVLG00005007175) #18	ENSSVLG00005007165	IRX1 (ENSSVLG00005007138) #20	ENSSVLG00005007115	ADAMTS16 (ENSSVLG00005006885) #21	ICE1 (ENSSVLG00005006497) #22	MED10 (ENSSVLG00005006416) #23	UBE2QL1 (ENSSVLG00005006397) #24	NSUN2 (ENSSVLG00005006203) #25	SRD5A1 (ENSSVLG00005006147) #26	TENT4A (ENSSVLG00005006070) #27	ADCY2 (ENSSVLG00005006016) #28	CFAP90 (ENSSVLG00005005976) #29	FASTKD3 (ENSSVLG00005005935) #30	MTRR (ENSSVLG00005005871) #31	SEMA5A (ENSSVLG00005005842) #32	TAS2R1 (ENSSVLG00005005821) #33	ENSSVLG00005005790	ATPSCKMT (ENSSVLG00005005707) #34	ENSSVLG00005005577 #35	CMBL (ENSSVLG00005005537) #36
Lagomorpha	ANCESTRAL SPECIES	514															ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Rabbit	MODERN SPECIES	601															ADAMTS16 (ENSOCUG00000009507) #21	ICE1 (ENSOCUG00000022005) #22
Pika	MODERN SPECIES	1946															ADAMTS16 (ENSOPRG00000013210) #21	ENSOPRG00000013244 #22
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Common shrew	MODERN SPECIES	4466																ENSSARG00000004026 #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.a ##37
Carnivora	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000157657 #8	ENSGT00940000154896.f #9	ENSGT00940000154896.e #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000157657 #8	ENSGT00940000154896.f #9	ENSGT00940000154896.e #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Tiger	MODERN SPECIES	523															ADAMTS16 (ENSPTIG00000013544) #21	ICE1 (ENSPTIG00000013477) #22	MED10 (ENSPTIG00000013384) #23	NSUN2 (ENSPTIG00000013257) #25	SRD5A1 (ENSPTIG00000013232) #26	TENT4A (ENSPTIG00000013200) #27
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000157657 #8	ENSGT00940000154896.f #9	ENSGT00940000154896.e #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
leopard	MODERN SPECIES	19				ENSPPRG00000011435 #9	SLC6A18 (ENSPPRG00000011628) #10	TERT (ENSPPRG00000006427) #11	CLPTM1L (ENSPPRG00000016169) #12	SLC6A3 (ENSPPRG00000018924) #13	LPCAT1 (ENSPPRG00000021187) #14	NDUFS6 (ENSPPRG00000022405) #16	IRX4 (ENSPPRG00000024448) #17	IRX2 (ENSPPRG00000024401) #18	ENSPPRG00000024272	IRX1 (ENSPPRG00000024209) #20	ADAMTS16 (ENSPPRG00000023920) #21	ENSPPRG00000022666 #22	MED10 (ENSPPRG00000000589) #23	UBE2QL1 (ENSPPRG00000000629) #24	NSUN2 (ENSPPRG00000001946) #25	SRD5A1 (ENSPPRG00000002054) #26	TENT4A (ENSPPRG00000002409) #27	ADCY2 (ENSPPRG00000003380) #28	CFAP90 (ENSPPRG00000003784) #29	FASTKD3 (ENSPPRG00000004141) #30	MTRR (ENSPPRG00000004545) #31	SEMA5A (ENSPPRG00000005014) #32	TAS2R1 (ENSPPRG00000014981) #33	ATPSCKMT (ENSPPRG00000005698) #34	CCT5 (ENSPPRG00000006386) #35	CMBL (ENSPPRG00000006791) #36	MARCHF6 (ENSPPRG00000012698) #37
lion	MODERN SPECIES		NKD2 (ENSPLOG00000003335) #7	SLC12A7 (ENSPLOG00000003362) #8	SLC6A19 (ENSPLOG00000003408) #9	SLC6A18 (ENSPLOG00000003576) #10	TERT (ENSPLOG00000003847) #11	CLPTM1L (ENSPLOG00000003877) #12	SLC6A3 (ENSPLOG00000003913) #13	LPCAT1 (ENSPLOG00000003938) #14	ENSPLOG00000003949 #15	NDUFS6 (ENSPLOG00000003955) #16	IRX4 (ENSPLOG00000003963) #17	IRX2 (ENSPLOG00000003976) #18	ENSPLOG00000003986	IRX1 (ENSPLOG00000003994) #20	ADAMTS16 (ENSPLOG00000004010) #21	ICE1 (ENSPLOG00000004038) #22	MED10 (ENSPLOG00000004055) #23	UBE2QL1 (ENSPLOG00000004071) #24	NSUN2 (ENSPLOG00000004085) #25	SRD5A1 (ENSPLOG00000004092) #26	TENT4A (ENSPLOG00000004144) #27	ADCY2 (ENSPLOG00000004170) #28	CFAP90 (ENSPLOG00000004188) #29	FASTKD3 (ENSPLOG00000004196) #30	MTRR (ENSPLOG00000010289) #31	SEMA5A (ENSPLOG00000010322) #32	TAS2R1 (ENSPLOG00000010440) #33	ENSPLOG00000010455	ATPSCKMT (ENSPLOG00000010468) #34	CCT5 (ENSPLOG00000010569) #35	CMBL (ENSPLOG00000010689) #36
Cat	MODERN SPECIES		SLC12A7 (ENSFCAG00000009540) #8	SLC6A19 (ENSFCAG00000009541) #9	SLC6A18 (ENSFCAG00000009542) #10	TERT (ENSFCAG00000009543) #11	CLPTM1L (ENSFCAG00000009544) #12	SLC6A3 (ENSFCAG00000002581) #13	LPCAT1 (ENSFCAG00000000783) #14	ENSFCAG00000026326 #15	NDUFS6 (ENSFCAG00000033856) #16	IRX4 (ENSFCAG00000022359) #17	IRX2 (ENSFCAG00000040664) #18	ENSFCAG00000044678	IRX1 (ENSFCAG00000036923) #20	ENSFCAG00000025379	ADAMTS16 (ENSFCAG00000003777) #21	ICE1 (ENSFCAG00000027435) #22	ENSFCAG00000037684	UBE2QL1 (ENSFCAG00000038630) #24	NSUN2 (ENSFCAG00000015602) #25	SRD5A1 (ENSFCAG00000015601) #26	TENT4A (ENSFCAG00000003474) #27	ADCY2 (ENSFCAG00000015101) #28	CFAP90 (ENSFCAG00000019341) #29	FASTKD3 (ENSFCAG00000015104) #30	MTRR (ENSFCAG00000015105) #31	SEMA5A (ENSFCAG00000012608) #32	TAS2R1 (ENSFCAG00000012611) #33	ENSFCAG00000048844	ATPSCKMT (ENSFCAG00000027158) #34	CCT5 (ENSFCAG00000003129) #35	CMBL (ENSFCAG00000028005) #36
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Canidae	ANCESTRAL SPECIES	62	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00390000013811.b.d	ENSGT00950000183199.b #22	ENSGT00950000186221	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Canis_lupus	ANCESTRAL SPECIES	49	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00390000013811.b.d	ENSGT00950000183199.b #22	ENSGT00950000186221	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00940000153052.c.b.a.a.a.a.b.j.b	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Dog	MODERN SPECIES	27	NKD2 (ENSCAFG00845027016) #7	SLC12A7 (ENSCAFG00845026600) #8	SLC6A19 (ENSCAFG00845026397) #9	SLC6A18 (ENSCAFG00845026287) #10	TERT (ENSCAFG00845025817) #11	CLPTM1L (ENSCAFG00845025532) #12	SLC6A3 (ENSCAFG00845025384) #13	LPCAT1 (ENSCAFG00845025093) #14	MRPL36 (ENSCAFG00845025034) #15	ENSCAFG00845024996 #16	IRX4 (ENSCAFG00845024941) #17	IRX2 (ENSCAFG00845024864) #18	IRX1 (ENSCAFG00845024655) #20	ADAMTS16 (ENSCAFG00845024365) #21	ENSCAFG00845024318	ICE1 (ENSCAFG00845024182) #22	ENSCAFG00845024145	MED10 (ENSCAFG00845024101) #23	UBE2QL1 (ENSCAFG00845024067) #24	NSUN2 (ENSCAFG00845023886) #25	SRD5A1 (ENSCAFG00845023819) #26	TENT4A (ENSCAFG00845023557) #27	ADCY2 (ENSCAFG00845023075) #28	CFAP90 (ENSCAFG00845022890) #29	FASTKD3 (ENSCAFG00845022802) #30	MTRR (ENSCAFG00845022722) #31	SEMA5A (ENSCAFG00845022219) #32	TAS2R1 (ENSCAFG00845022145) #33	ENSCAFG00845022120	ATPSCKMT (ENSCAFG00845021964) #34	CCT5 (ENSCAFG00845021786) #35
Dingo	MODERN SPECIES	159	NKD2 (ENSCAFG00020023031) #7	SLC12A7 (ENSCAFG00020023026) #8	SLC6A19 (ENSCAFG00020023014) #9	SLC6A18 (ENSCAFG00020022926) #10	TERT (ENSCAFG00020022919) #11	CLPTM1L (ENSCAFG00020022917) #12	SLC6A3 (ENSCAFG00020022906) #13	LPCAT1 (ENSCAFG00020022903) #14	MRPL36 (ENSCAFG00020022901) #15	NDUFS6 (ENSCAFG00020022900) #16	IRX4 (ENSCAFG00020022896) #17	IRX2 (ENSCAFG00020022893) #18	IRX1 (ENSCAFG00020022891) #20	ADAMTS16 (ENSCAFG00020022881) #21	ENSCAFG00020022878	ENSCAFG00020022877 #22	ENSCAFG00020022874	MED10 (ENSCAFG00020022869) #23	UBE2QL1 (ENSCAFG00020022868) #24	NSUN2 (ENSCAFG00020022862) #25	SRD5A1 (ENSCAFG00020022843) #26	TENT4A (ENSCAFG00020022835) #27	ENSCAFG00020022831	ADCY2 (ENSCAFG00020022544) #28	CFAP90 (ENSCAFG00020022543) #29	FASTKD3 (ENSCAFG00020022541) #30	MTRR (ENSCAFG00020022525) #31	SEMA5A (ENSCAFG00020022499) #32	TAS2R1 (ENSCAFG00020022493) #33	ENSCAFG00020022491	ATPSCKMT (ENSCAFG00020022486) #34
Red fox	MODERN SPECIES	138																ICE1 (ENSVVUG00000017667) #22	ENSVVUG00000017674	MED10 (ENSVVUG00000017687) #23	UBE2QL1 (ENSVVUG00000017689) #24	NSUN2 (ENSVVUG00000017691) #25	SRD5A1 (ENSVVUG00000017694) #26	TENT4A (ENSVVUG00000017702) #27	ADCY2 (ENSVVUG00000017710) #28	CFAP90 (ENSVVUG00000017732) #29	FASTKD3 (ENSVVUG00000017734) #30	MTRR (ENSVVUG00000017737) #31	ENSVVUG00000017745	SEMA5A (ENSVVUG00000017753) #32	TAS2R1 (ENSVVUG00000017784) #33	ENSVVUG00000017786	ATPSCKMT (ENSVVUG00000017833) #34
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Mustelinae	ANCESTRAL SPECIES	127	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31
American mink	MODERN SPECIES	131	TRIP13 (ENSNVIG00000022459)	ENSNVIG00000022473	SLC12A7 (ENSNVIG00000022621) #8	SLC6A19 (ENSNVIG00000024286) #9	SLC6A18 (ENSNVIG00000024290) #10	TERT (ENSNVIG00000024328) #11	CLPTM1L (ENSNVIG00000024366) #12	SLC6A3 (ENSNVIG00000024373) #13	LPCAT1 (ENSNVIG00000024375) #14	NDUFS6 (ENSNVIG00000024379) #16	IRX4 (ENSNVIG00000024384) #17	IRX2 (ENSNVIG00000000014) #18	ENSNVIG00000000020	IRX1 (ENSNVIG00000000063) #20	ADAMTS16 (ENSNVIG00000000104) #21	ICE1 (ENSNVIG00000000134) #22	MED10 (ENSNVIG00000000179) #23
Ferret	MODERN SPECIES	296	TERT (ENSMPUG00000008917) #11	CLPTM1L (ENSMPUG00000008908) #12	ENSMPUG00000008903	SLC6A3 (ENSMPUG00000007672) #13	LPCAT1 (ENSMPUG00000007662) #14	ENSMPUG00000019810	IRX4 (ENSMPUG00000007656) #17	IRX2 (ENSMPUG00000007647) #18	ENSMPUG00000007644	IRX1 (ENSMPUG00000007638) #20	ENSMPUG00000007631	ENSMPUG00000007624	ENSMPUG00000007621	ENSMPUG00000007616	ADAMTS16 (ENSMPUG00000007606) #21	ICE1 (ENSMPUG00000007595) #22	ENSMPUG00000007591	ENSMPUG00000007586	ENSMPUG00000007583	MED10 (ENSMPUG00000007576) #23	ENSMPUG00000019809	NSUN2 (ENSMPUG00000007561) #25	SRD5A1 (ENSMPUG00000007540) #26	TENT4A (ENSMPUG00000007530) #27	ENSMPUG00000019807	ADCY2 (ENSMPUG00000007159) #28	FASTKD3 (ENSMPUG00000007141) #30	ENSMPUG00000007134
Ursidae	ANCESTRAL SPECIES	24	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Giant Panda	MODERN SPECIES	13	ENSAMEG00000008326	ENSAMEG00000029733	BRD9 (ENSAMEG00000008289)	ENSAMEG00000008267	ENSAMEG00000010356 #9	SLC6A18 (ENSAMEG00000010403) #10	TERT (ENSAMEG00000010578) #11	CLPTM1L (ENSAMEG00000010640) #12	SLC6A3 (ENSAMEG00000010690) #13	LPCAT1 (ENSAMEG00000010885) #14	NDUFS6 (ENSAMEG00000010930) #16	IRX4 (ENSAMEG00000010933) #17	IRX2 (ENSAMEG00000030165) #18	IRX1 (ENSAMEG00000001629) #20	ENSAMEG00000005402 #21	ICE1 (ENSAMEG00000005383) #22	NSUN2 (ENSAMEG00000002744) #25	SRD5A1 (ENSAMEG00000002796) #26	TENT4A (ENSAMEG00000002806) #27	ENSAMEG00000013734	ADCY2 (ENSAMEG00000028284) #28	FASTKD3 (ENSAMEG00000000793) #30	MTRR (ENSAMEG00000000762) #31	SEMA5A (ENSAMEG00000003884) #32	TAS2R1 (ENSAMEG00000003883) #33	ENSAMEG00000003878	ATPSCKMT (ENSAMEG00000003866) #34	CCT5 (ENSAMEG00000003838) #35	CMBL (ENSAMEG00000003820) #36	MARCHF6 (ENSAMEG00000003768) #37	ROPN1L (ENSAMEG00000003758)
Ursus	ANCESTRAL SPECIES	114	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Polar bear	MODERN SPECIES	324	CEP72 (ENSUMAG00000022135)	TPPP (ENSUMAG00000022129)	ENSUMAG00000022124	BRD9 (ENSUMAG00000022112)	TRIP13 (ENSUMAG00000022041)	ENSUMAG00000022013 #7	SLC12A7 (ENSUMAG00000021868) #8	SLC6A19 (ENSUMAG00000021799) #9	SLC6A18 (ENSUMAG00000021793) #10	CLPTM1L (ENSUMAG00000021602) #12	SLC6A3 (ENSUMAG00000021572) #13	LPCAT1 (ENSUMAG00000021535) #14	ENSUMAG00000021510 #15	ENSUMAG00000021508 #16	ADAMTS16 (ENSUMAG00000021427) #21	ICE1 (ENSUMAG00000021400) #22	ENSUMAG00000021395	NSUN2 (ENSUMAG00000021149) #25	SRD5A1 (ENSUMAG00000021097) #26	TENT4A (ENSUMAG00000021088) #27	ADCY2 (ENSUMAG00000020819) #28
American black bear	DUPLICATION
American black bear	MODERN SPECIES	2798																ENSUAMG00000008419 #22
American black bear	MODERN SPECIES	1283															ADAMTS16 (ENSUAMG00000023549) #21	ENSUAMG00000023553 #22
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Equus	ANCESTRAL SPECIES	23	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT01090000260115	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000155163.a.a	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Donkey	MODERN SPECIES	1	TRIP13 (ENSEASG00005018251)	NKD2 (ENSEASG00005018295) #7	SLC12A7 (ENSEASG00005018301) #8	SLC6A19 (ENSEASG00005018308) #9	SLC6A18 (ENSEASG00005018374) #10	TERT (ENSEASG00005018543) #11	CLPTM1L (ENSEASG00005018545) #12	SLC6A3 (ENSEASG00005018547) #13	LPCAT1 (ENSEASG00005032107) #14	ENSEASG00005036706 #15	NDUFS6 (ENSEASG00005023604) #16	IRX4 (ENSEASG00005018554) #17	IRX2 (ENSEASG00005018557) #18	IRX1 (ENSEASG00005018560) #20	ADAMTS16 (ENSEASG00005018564) #21	ICE1 (ENSEASG00005018571) #22	ENSEASG00005018574	MED10 (ENSEASG00005018576) #23	UBE2QL1 (ENSEASG00005032765) #24	NSUN2 (ENSEASG00005018580) #25	ENSEASG00005018582	SRD5A1 (ENSEASG00005018581) #26	TENT4A (ENSEASG00005018583) #27	ADCY2 (ENSEASG00005018584) #28	CFAP90 (ENSEASG00005024888) #29	FASTKD3 (ENSEASG00005018587) #30	MTRR (ENSEASG00005018589) #31	ENSEASG00005026990	SEMA5A (ENSEASG00005018591) #32	TAS2R1 (ENSEASG00005018593) #33	ATPSCKMT (ENSEASG00005018594) #34
Horse	MODERN SPECIES	13	SLC12A7 (ENSECAG00000009911) #8	SLC6A19 (ENSECAG00000015357) #9	SLC6A18 (ENSECAG00000014930) #10	TERT (ENSECAG00000001347) #11	CLPTM1L (ENSECAG00000013231) #12	ENSECAG00000058649	SLC6A3 (ENSECAG00000024615) #13	LPCAT1 (ENSECAG00000021716) #14	MRPL36 (ENSECAG00000001222) #15	NDUFS6 (ENSECAG00000021690) #16	IRX4 (ENSECAG00000017403) #17	IRX2 (ENSECAG00000015758) #18	IRX1 (ENSECAG00000015273) #20	ENSECAG00000001110	ADAMTS16 (ENSECAG00000000787) #21	ICE1 (ENSECAG00000023968) #22	MED10 (ENSECAG00000023738)	ENSECAG00000035561 #24	NSUN2 (ENSECAG00000016357) #25	ENSECAG00000045164	SRD5A1 (ENSECAG00000012520) #26	TENT4A (ENSECAG00000010134) #27	ADCY2 (ENSECAG00000016266) #28	CFAP90 (ENSECAG00000015640) #29	FASTKD3 (ENSECAG00000014894) #30	MTRR (ENSECAG00000023073) #31	ENSECAG00000048611	ENSECAG00000045308	SEMA5A (ENSECAG00000016241) #32	TAS2R1 (ENSECAG00000005160) #33	ATPSCKMT (ENSECAG00000013194) #34
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00390000002325 #19	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Megabat	MODERN SPECIES	1891																ENSPVAG00000004215 #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Microbat	MODERN SPECIES	937	TRIP13 (ENSMLUG00000004237)	NKD2 (ENSMLUG00000004247) #7	SLC12A7 (ENSMLUG00000004253) #8	SLC6A19 (ENSMLUG00000012517) #9	SLC6A18 (ENSMLUG00000012527) #10	TERT (ENSMLUG00000012533) #11	CLPTM1L (ENSMLUG00000012546) #12	SLC6A3 (ENSMLUG00000015691) #13	LPCAT1 (ENSMLUG00000015702) #14	NDUFS6 (ENSMLUG00000016888) #16	ENSMLUG00000007563 #17	IRX2 (ENSMLUG00000002364) #18	ENSMLUG00000030572	ENSMLUG00000028897	ADAMTS16 (ENSMLUG00000016787) #21	ICE1 (ENSMLUG00000016799) #22	ENSMLUG00000007960 #23	UBE2QL1 (ENSMLUG00000029107) #24	NSUN2 (ENSMLUG00000009609) #25	SRD5A1 (ENSMLUG00000009652) #26	TENT4A (ENSMLUG00000004424) #27	ENSMLUG00000029028	ADCY2 (ENSMLUG00000013498) #28	CFAP90 (ENSMLUG00000017359) #29	FASTKD3 (ENSMLUG00000013518) #30	MTRR (ENSMLUG00000010391) #31	GOLPH3 (ENSMLUG00000007410)	PDZD2 (ENSMLUG00000007331)	C5orf22 (ENSMLUG00000002598)	DROSHA (ENSMLUG00000002581)	CDH6 (ENSMLUG00000002574)
Greater horseshoe bat	MODERN SPECIES	25	SLC6A19 (ENSRFEG00010001577) #9	SLC6A18 (ENSRFEG00010001792) #10	TERT (ENSRFEG00010002119) #11	CLPTM1L (ENSRFEG00010002171) #12	SLC6A3 (ENSRFEG00010002207) #13	LPCAT1 (ENSRFEG00010002236) #14	MRPL36 (ENSRFEG00010002262) #15	NDUFS6 (ENSRFEG00010002276) #16	IRX4 (ENSRFEG00010002288) #17	IRX2 (ENSRFEG00010002308) #18	ENSRFEG00010002333	ENSRFEG00010002345	ENSRFEG00010002361	IRX1 (ENSRFEG00010002369) #20	ADAMTS16 (ENSRFEG00010002424) #21	ICE1 (ENSRFEG00010002508) #22	MED10 (ENSRFEG00010002529) #23	UBE2QL1 (ENSRFEG00010002542) #24	NSUN2 (ENSRFEG00010002690) #25	SRD5A1 (ENSRFEG00010002875) #26	TENT4A (ENSRFEG00010002900) #27	ADCY2 (ENSRFEG00010002967) #28	CFAP90 (ENSRFEG00010003003) #29	FASTKD3 (ENSRFEG00010003029) #30	MTRR (ENSRFEG00010003071) #31	SEMA5A (ENSRFEG00010003116) #32	TAS2R1 (ENSRFEG00010003156) #33	ATPSCKMT (ENSRFEG00010003174) #34	CCT5 (ENSRFEG00010003237) #35	CMBL (ENSRFEG00010003311) #36	MARCHF6 (ENSRFEG00010003360) #37
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Suina	ANCESTRAL SPECIES	25	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00960000191710	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Chacoan peccary	MODERN SPECIES	7												IRX4 (ENSCWAG00000000416) #17	IRX2 (ENSCWAG00000000397) #18	IRX1 (ENSCWAG00000000355) #20	ADAMTS16 (ENSCWAG00000000282) #21	ICE1 (ENSCWAG00000000224) #22	MED10 (ENSCWAG00000005876) #23	UBE2QL1 (ENSCWAG00000005858) #24	NSUN2 (ENSCWAG00000005818) #25	SRD5A1 (ENSCWAG00000005799) #26	TENT4A (ENSCWAG00000005723) #27	ADCY2 (ENSCWAG00000005614) #28	CFAP90 (ENSCWAG00000005585) #29	FASTKD3 (ENSCWAG00000005559) #30	MTRR (ENSCWAG00000005530) #31	SEMA5A (ENSCWAG00000005493) #32	TAS2R1 (ENSCWAG00000005462) #33	ATPSCKMT (ENSCWAG00000005400) #34	CCT5 (ENSCWAG00000005226) #35	CMBL (ENSCWAG00000005191) #36	MARCHF6 (ENSCWAG00000005026) #37
Pig	MODERN SPECIES	7	TRIP13 (ENSSSCG00000034522)	NKD2 (ENSSSCG00000055161) #7	SLC12A7 (ENSSSCG00000034302) #8	SLC6A19 (ENSSSCG00000017120) #9	SLC6A18 (ENSSSCG00000017117) #10	TERT (ENSSSCG00000017118) #11	CLPTM1L (ENSSSCG00000017119) #12	SLC6A3 (ENSSSCG00000017121) #13	LPCAT1 (ENSSSCG00000017116) #14	MRPL36 (ENSSSCG00000040154) #15	NDUFS6 (ENSSSCG00000017114) #16	IRX4 (ENSSSCG00000017112) #17	IRX2 (ENSSSCG00000032074) #18	IRX1 (ENSSSCG00000034884) #20	ADAMTS16 (ENSSSCG00000017109) #21	ICE1 (ENSSSCG00000031547) #22	MED10 (ENSSSCG00000017106) #23	UBE2QL1 (ENSSSCG00000035825) #24	NSUN2 (ENSSSCG00000017104) #25	SRD5A1 (ENSSSCG00000017103) #26	TENT4A (ENSSSCG00000017102) #27	ADCY2 (ENSSSCG00000017101) #28	CFAP90 (ENSSSCG00000017098) #29	FASTKD3 (ENSSSCG00000017099) #30	MTRR (ENSSSCG00000017100) #31	ENSSSCG00000048414	SEMA5A (ENSSSCG00000017095) #32	TAS2R1 (ENSSSCG00000053250) #33	ATPSCKMT (ENSSSCG00000036387) #34	CCT5 (ENSSSCG00000024126) #35	CMBL (ENSSSCG00000039763) #36
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Arabian camel	MODERN SPECIES	22	TRIP13 (ENSCDRG00005013214)	NKD2 (ENSCDRG00005013068) #7	SLC12A7 (ENSCDRG00005007851) #8	SLC6A19 (ENSCDRG00005007586) #9	SLC6A18 (ENSCDRG00005007426) #10	TERT (ENSCDRG00005007091) #11	CLPTM1L (ENSCDRG00005006937) #12	SLC6A3 (ENSCDRG00005006584) #13	LPCAT1 (ENSCDRG00005006427) #14	MRPL36 (ENSCDRG00005006409) #15	NDUFS6 (ENSCDRG00005006367) #16	IRX4 (ENSCDRG00005005132) #17	IRX2 (ENSCDRG00005005106) #18	ENSCDRG00005005061	ENSCDRG00005004962 #21	ICE1 (ENSCDRG00005004943) #22	MED10 (ENSCDRG00005004916) #23	NSUN2 (ENSCDRG00005004622) #25	SRD5A1 (ENSCDRG00005004588) #26	TENT4A (ENSCDRG00005004536) #27	ADCY2 (ENSCDRG00005004299) #28	CFAP90 (ENSCDRG00005004257) #29	FASTKD3 (ENSCDRG00005004222) #30	MTRR (ENSCDRG00005004184) #31	ENSCDRG00005004152	SEMA5A (ENSCDRG00005003914) #32	TAS2R1 (ENSCDRG00005003868) #33	ATPSCKMT (ENSCDRG00005003839) #34	CCT5 (ENSCDRG00005003627) #35	CMBL (ENSCDRG00005003573) #36	MARCHF6 (ENSCDRG00005003229) #37
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Cetacea	ANCESTRAL SPECIES	1	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00950000183198.c.b.a.t.a
Sperm whale	MODERN SPECIES	19	NKD2 (ENSPCTG00005001284) #7	SLC12A7 (ENSPCTG00005001313) #8	SLC6A19 (ENSPCTG00005001357) #9	TERT (ENSPCTG00005001408) #11	CLPTM1L (ENSPCTG00005001495) #12	SLC6A3 (ENSPCTG00005001531) #13	LPCAT1 (ENSPCTG00005001554) #14	MRPL36 (ENSPCTG00005001573) #15	NDUFS6 (ENSPCTG00005001580) #16	IRX4 (ENSPCTG00005001592) #17	IRX2 (ENSPCTG00005001610) #18	ENSPCTG00005001625	ENSPCTG00005001636 #18	IRX1 (ENSPCTG00005001645) #20	ADAMTS16 (ENSPCTG00005001733) #21	ICE1 (ENSPCTG00005002002) #22	ENSPCTG00005002020	MED10 (ENSPCTG00005002031) #23	ENSPCTG00005002052 #25	SRD5A1 (ENSPCTG00005002064) #26	TENT4A (ENSPCTG00005002085) #27	ADCY2 (ENSPCTG00005002147) #28	CFAP90 (ENSPCTG00005002289) #29	FASTKD3 (ENSPCTG00005002301) #30	MTRR (ENSPCTG00005002314) #31	SEMA5A (ENSPCTG00005002330) #32	ATPSCKMT (ENSPCTG00005002344) #34	CCT5 (ENSPCTG00005002365) #35	CMBL (ENSPCTG00005002401) #36	MARCH6 (ENSPCTG00005002477) #37	ENSPCTG00005002747
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00990000208225	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Narwhal	MODERN SPECIES	298	NKD2 (ENSMMNG00015005039) #7	SLC12A7 (ENSMMNG00015005066) #8	SLC6A19 (ENSMMNG00015005102) #9	SLC6A18 (ENSMMNG00015005126) #10	TERT (ENSMMNG00015005153) #11	CLPTM1L (ENSMMNG00015005167) #12	SLC6A3 (ENSMMNG00015005189) #13	LPCAT1 (ENSMMNG00015005202) #14	MRPL36 (ENSMMNG00015005219) #15	NDUFS6 (ENSMMNG00015005230) #16	IRX4 (ENSMMNG00015005245) #17	IRX2 (ENSMMNG00015005260) #18	ENSMMNG00015005274	IRX1 (ENSMMNG00015005292) #20	ADAMTS16 (ENSMMNG00015005325) #21	ICE1 (ENSMMNG00015005372) #22	ENSMMNG00015005394 #23	UBE2QL1 (ENSMMNG00015005409) #24	NSUN2 (ENSMMNG00015005419) #25	SRD5A1 (ENSMMNG00015005441) #26	TENT4A (ENSMMNG00015005453) #27	ADCY2 (ENSMMNG00015005481) #28	CFAP90 (ENSMMNG00015005524) #29	FASTKD3 (ENSMMNG00015005536) #30	MTRR (ENSMMNG00015005557) #31	ENSMMNG00015005590	ENSMMNG00015005605	SEMA5A (ENSMMNG00015005625) #32	ATPSCKMT (ENSMMNG00015005677) #34	CCT5 (ENSMMNG00015005728) #35	CMBL (ENSMMNG00015005779) #36
Beluga whale	MODERN SPECIES	16	TRIP13 (ENSDLEG00000003445)	NKD2 (ENSDLEG00000003494) #7	SLC12A7 (ENSDLEG00000003522) #8	SLC6A19 (ENSDLEG00000003586) #9	SLC6A18 (ENSDLEG00000003661) #10	TERT (ENSDLEG00000003731) #11	CLPTM1L (ENSDLEG00000003766) #12	SLC6A3 (ENSDLEG00000003787) #13	LPCAT1 (ENSDLEG00000003802) #14	ENSDLEG00000003825 #15	NDUFS6 (ENSDLEG00000003836) #16	IRX4 (ENSDLEG00000003849) #17	IRX2 (ENSDLEG00000003871) #18	IRX1 (ENSDLEG00000003895) #20	ADAMTS16 (ENSDLEG00000000178) #21	ICE1 (ENSDLEG00000000235) #22	MED10 (ENSDLEG00000000283) #23	UBE2QL1 (ENSDLEG00000000392) #24	NSUN2 (ENSDLEG00000000437) #25	SRD5A1 (ENSDLEG00000000513) #26	PAPD7 (ENSDLEG00000000536) #27	ADCY2 (ENSDLEG00000000578) #28	CUNH5orf49 (ENSDLEG00000000660) #29	FASTKD3 (ENSDLEG00000000670) #30	MTRR (ENSDLEG00000000694) #31	SEMA5A (ENSDLEG00000000752) #32	ATPSCKMT (ENSDLEG00000000926) #34	CCT5 (ENSDLEG00000000940) #35	CMBL (ENSDLEG00000000961) #36	MARCH6 (ENSDLEG00000000992) #37	ROPN1L (ENSDLEG00000001073)
Vaquita	MODERN SPECIES	14	SLC12A7 (ENSPSNG00000002551) #8	SLC6A19 (ENSPSNG00000002478) #9	SLC6A18 (ENSPSNG00000002444) #10	TERT (ENSPSNG00000002372) #11	CLPTM1L (ENSPSNG00000002275) #12	SLC6A3 (ENSPSNG00000002215) #13	LPCAT1 (ENSPSNG00000002146) #14	ENSPSNG00000002113 #15	NDUFS6 (ENSPSNG00000002096) #16	IRX4 (ENSPSNG00000002071) #17	IRX2 (ENSPSNG00000002053) #18	ENSPSNG00000002036	IRX1 (ENSPSNG00000002005) #20	ENSPSNG00000001985	ADAMTS16 (ENSPSNG00000001929) #21	ICE1 (ENSPSNG00000001876) #22	ENSPSNG00000001827 #23	UBE2QL1 (ENSPSNG00000001807) #24	NSUN2 (ENSPSNG00000001768) #25	SRD5A1 (ENSPSNG00000001754) #26	TENT4A (ENSPSNG00000001714) #27	ADCY2 (ENSPSNG00000001660) #28	CFAP90 (ENSPSNG00000001622) #29	FASTKD3 (ENSPSNG00000001602) #30	MTRR (ENSPSNG00000001565) #31	ENSPSNG00000001545	SEMA5A (ENSPSNG00000001504) #32	ATPSCKMT (ENSPSNG00000001462) #34	CCT5 (ENSPSNG00000001419) #35	CMBL (ENSPSNG00000001379) #36	MARCHF6 (ENSPSNG00000001274) #37
Dolphin	MODERN SPECIES	4748																ENSTTRG00000017079 #22
Blue whale	MODERN SPECIES	14	SLC12A7 (ENSBMSG00010012799) #8	SLC6A19 (ENSBMSG00010013817) #9	ENSBMSG00010013849 #10	TERT (ENSBMSG00010013889) #11	CLPTM1L (ENSBMSG00010014019) #12	SLC6A3 (ENSBMSG00010014310) #13	LPCAT1 (ENSBMSG00010014400) #14	MRPL36 (ENSBMSG00010014493) #15	NDUFS6 (ENSBMSG00010014513) #16	ENSBMSG00010014531 #17	ENSBMSG00010014549 #17	IRX2 (ENSBMSG00010014578) #18	ENSBMSG00010014609	IRX1 (ENSBMSG00010014662) #20	ADAMTS16 (ENSBMSG00010014738) #21	ICE1 (ENSBMSG00010014997) #22	MED10 (ENSBMSG00010015064) #23	ENSBMSG00010015095 #24	NSUN2 (ENSBMSG00010015114) #25	SRD5A1 (ENSBMSG00010015152) #26	TENT4A (ENSBMSG00010015190) #27	ADCY2 (ENSBMSG00010015273) #28	CFAP90 (ENSBMSG00010015403) #29	FASTKD3 (ENSBMSG00010015428) #30	MTRR (ENSBMSG00010015453) #31	SEMA5A (ENSBMSG00010015493) #32	ENSBMSG00010015568	ATPSCKMT (ENSBMSG00010015593) #34	CCT5 (ENSBMSG00010015626) #35	CMBL (ENSBMSG00010015715) #36	MARCHF6 (ENSBMSG00010015821) #37
Pecora	ANCESTRAL SPECIES	25	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Yarkand deer	MODERN SPECIES	17	TRIP13 (ENSCHYG00000021703)	NKD2 (ENSCHYG00000021646) #7	SLC12A7 (ENSCHYG00000021056) #8	SLC6A19 (ENSCHYG00000020930) #9	SLC6A18 (ENSCHYG00000020702) #10	TERT (ENSCHYG00000020414) #11	ENSCHYG00000020359	CLPTM1L (ENSCHYG00000020066) #12	ENSCHYG00000019585 #13	LPCAT1 (ENSCHYG00000019379) #14	ENSCHYG00000019353 #15	ENSCHYG00000019290 #16	IRX4 (ENSCHYG00000019198) #17	IRX1 (ENSCHYG00000019067) #20	ADAMTS16 (ENSCHYG00000018678) #21	ICE1 (ENSCHYG00000018552) #22	ENSCHYG00000018521	ENSCHYG00000018501	MED10 (ENSCHYG00000018459) #23	UBE2QL1 (ENSCHYG00000018406) #24	NSUN2 (ENSCHYG00000018182) #25	SRD5A1 (ENSCHYG00000018150) #26	TENT4A (ENSCHYG00000018057) #27	ADCY2 (ENSCHYG00000017238) #28	ENSCHYG00000017205	CFAP90 (ENSCHYG00000017169) #29	FASTKD3 (ENSCHYG00000017127) #30	MTRR (ENSCHYG00000016969) #31	SEMA5A (ENSCHYG00000016807) #32	TAS2R1 (ENSCHYG00000016763) #33	ENSCHYG00000016710
Percora_a	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Siberian musk deer	MODERN SPECIES	1233															ADAMTS16 (ENSMMSG00000019291) #21	ICE1 (ENSMMSG00000020525) #22	MED10 (ENSMMSG00000020585) #23	UBE2QL1 (ENSMMSG00000020605) #24	NSUN2 (ENSMMSG00000020641) #25	ENSMMSG00000020746 #26	TENT4A (ENSMMSG00000020780) #27	ADCY2 (ENSMMSG00000020881) #28	ENSMMSG00000021030	CFAP90 (ENSMMSG00000021039) #29	FASTKD3 (ENSMMSG00000021063) #30	MTRR (ENSMMSG00000021088) #31	SEMA5A (ENSMMSG00000021177) #32	ENSMMSG00000021301	ENSMMSG00000021350 #33	ATPSCKMT (ENSMMSG00000021397) #34	CCT5 (ENSMMSG00000021573) #35
Bovidae	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Caprinae	ANCESTRAL SPECIES	24	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Goat	MODERN SPECIES	12	TPPP (ENSCHIG00000012981)	SLC6A19 (ENSCHIG00000009247) #9	SLC6A18 (ENSCHIG00000017593) #10	TERT (ENSCHIG00000008229) #11	BRD9 (ENSCHIG00000015801)	TRIP13 (ENSCHIG00000022332)	NKD2 (ENSCHIG00000022698) #7	SLC12A7 (ENSCHIG00000018789) #8	SLC6A3 (ENSCHIG00000021410) #13	LPCAT1 (ENSCHIG00000008758) #14	NDUFS6 (ENSCHIG00000020281) #16	IRX4 (ENSCHIG00000023690) #17	IRX2 (ENSCHIG00000011251) #18	IRX1 (ENSCHIG00000017851) #20	ADAMTS16 (ENSCHIG00000010517) #21	ICE1 (ENSCHIG00000024007) #22	MED10 (ENSCHIG00000020899) #23	UBE2QL1 (ENSCHIG00000002861) #24	NSUN2 (ENSCHIG00000019385) #25	SRD5A1 (ENSCHIG00000012029) #26	TENT4A (ENSCHIG00000017328) #27	ENSCHIG00000025402	ADCY2 (ENSCHIG00000023502) #28	CFAP90 (ENSCHIG00000025918) #29	FASTKD3 (ENSCHIG00000018823) #30	MTRR (ENSCHIG00000019340) #31	ENSCHIG00000001904	SEMA5A (ENSCHIG00000013180) #32	ENSCHIG00000019011	ATPSCKMT (ENSCHIG00000018299) #34	CCT5 (ENSCHIG00000018198) #35
Rambouillet Sheep	MODERN SPECIES	7	BRD9 (ENSOARG00020013591)	TRIP13 (ENSOARG00020013528)	SLC12A7 (ENSOARG00020012793) #8	SLC6A19 (ENSOARG00020012724) #9	SLC6A18 (ENSOARG00020011151) #10	TERT (ENSOARG00020010728) #11	CLPTM1L (ENSOARG00020010550) #12	SLC6A3 (ENSOARG00020010397) #13	LPCAT1 (ENSOARG00020010211) #14	ENSOARG00020010180 #15	NDUFS6 (ENSOARG00020010127) #16	IRX4 (ENSOARG00020010022) #17	IRX2 (ENSOARG00020023975) #18	IRX1 (ENSOARG00020023933) #20	ADAMTS16 (ENSOARG00020023792) #21	ICE1 (ENSOARG00020023470) #22	MED10 (ENSOARG00020023421) #23	UBE2QL1 (ENSOARG00020023404) #24	NSUN2 (ENSOARG00020023145) #25	SRD5A1 (ENSOARG00020023075) #26	TENT4A (ENSOARG00020022831) #27	ENSOARG00020022762	ADCY2 (ENSOARG00020022595) #28	CFAP90 (ENSOARG00020022548) #29	FASTKD3 (ENSOARG00020022521) #30	MTRR (ENSOARG00020022449) #31	ENSOARG00020022435	SEMA5A (ENSOARG00020022080) #32	ENSOARG00020022027 #33	ATPSCKMT (ENSOARG00020021986) #34	CCT5 (ENSOARG00020021843) #35
Bovinae	ANCESTRAL SPECIES	25	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #28	ENSGT00910000148650	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34
Bos	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Bos_a	ANCESTRAL SPECIES	38	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Wild yak	MODERN SPECIES	2679																ENSBMUG00000022596 #22
Domestic yak	MODERN SPECIES	15	SLC12A7 (ENSBGRG00000007178) #8	ENSBGRG00000007512	SLC6A19 (ENSBGRG00000007536) #9	SLC6A18 (ENSBGRG00000007711) #10	TERT (ENSBGRG00000007850) #11	CLPTM1L (ENSBGRG00000008008) #12	SLC6A3 (ENSBGRG00000008417) #13	LPCAT1 (ENSBGRG00000008483) #14	ENSBGRG00000008559 #15	ENSBGRG00000008576 #16	IRX4 (ENSBGRG00000008624) #17	IRX2 (ENSBGRG00000008666) #18	IRX1 (ENSBGRG00000008805) #20	ADAMTS16 (ENSBGRG00000008878) #21	ENSBGRG00000009083	ENSBGRG00000009109 #22	ENSBGRG00000009147 #23	ENSBGRG00000009193 #24	ENSBGRG00000009262	NSUN2 (ENSBGRG00000009320) #25	SRD5A1 (ENSBGRG00000009686) #26	TENT4A (ENSBGRG00000009794) #27	ADCY2 (ENSBGRG00000009979) #28	CFAP90 (ENSBGRG00000011468) #29	FASTKD3 (ENSBGRG00000011515) #30	MTRR (ENSBGRG00000011588) #31	SEMA5A (ENSBGRG00000011867) #32	ENSBGRG00000012367	ATPSCKMT (ENSBGRG00000012505) #34	CCT5 (ENSBGRG00000012720) #35	CMBL (ENSBGRG00000013187) #36
Bos_b	ANCESTRAL SPECIES	29	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657.e #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263481.n.a.a.a.a.a.a.b.b.a.a.b.b	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34
Hybrid Bos Indicus	MODERN SPECIES	12	SLC12A7 (ENSBIXG00005026843) #8	SLC6A19 (ENSBIXG00005026916) #9	SLC6A18 (ENSBIXG00005026953) #10	TERT (ENSBIXG00005004650) #11	CLPTM1L (ENSBIXG00005006940) #12	SLC6A3 (ENSBIXG00005004683) #13	LPCAT1 (ENSBIXG00005027232) #14	ENSBIXG00005027272 #15	NDUFS6 (ENSBIXG00005004700) #16	IRX4 (ENSBIXG00005027355) #17	ENSBIXG00005027401	IRX2 (ENSBIXG00005027442) #18	IRX1 (ENSBIXG00005027510) #20	ENSBIXG00005027561	ADAMTS16 (ENSBIXG00005027878) #21	ICE1 (ENSBIXG00005006625) #22	MED10 (ENSBIXG00005006964) #23	ENSBIXG00005004816	UBE2QL1 (ENSBIXG00005028040) #24	NSUN2 (ENSBIXG00005028093) #25	SRD5A1 (ENSBIXG00005028127) #26	TENT4A (ENSBIXG00005028210) #27	ADCY2 (ENSBIXG00005028463) #28	CFAP90 (ENSBIXG00005006543) #29	FASTKD3 (ENSBIXG00005028543) #30	MTRR (ENSBIXG00005006640) #31	ENSBIXG00005002382	ENSBIXG00005028663	TAS2R1 (ENSBIXG00005028671) #33	ATPSCKMT (ENSBIXG00005028756) #34	CCT5 (ENSBIXG00005005013) #35
Cow	MODERN SPECIES	12	SLC12A7 (ENSBTAG00000006775) #8	ENSBTAG00000049547 #8	SLC6A19 (ENSBTAG00000045695) #9	SLC6A18 (ENSBTAG00000012559) #10	TERT (ENSBTAG00000012567) #11	CLPTM1L (ENSBTAG00000001329) #12	SLC6A3 (ENSBTAG00000015843) #13	LPCAT1 (ENSBTAG00000000944) #14	ENSBTAG00000050317 #15	NDUFS6 (ENSBTAG00000009914) #16	IRX4 (ENSBTAG00000015907) #17	ENSBTAG00000054006	IRX2 (ENSBTAG00000047499) #18	IRX1 (ENSBTAG00000000809) #20	ADAMTS16 (ENSBTAG00000018460) #21	ICE1 (ENSBTAG00000018501) #22	ENSBTAG00000049304	MED10 (ENSBTAG00000008130) #23	UBE2QL1 (ENSBTAG00000048851) #24	NSUN2 (ENSBTAG00000015466) #25	SRD5A1 (ENSBTAG00000015478) #26	TENT4A (ENSBTAG00000003381) #27	ENSBTAG00000032442	ADCY2 (ENSBTAG00000019210) #28	CFAP90 (ENSBTAG00000055034) #29	FASTKD3 (ENSBTAG00000009400) #30	MTRR (ENSBTAG00000009401) #31	ENSBTAG00000051674	SEMA5A (ENSBTAG00000005021) #32	ENSBTAG00000052324	TAS2R1 (ENSBTAG00000032508) #33
American bison	MODERN SPECIES	3291	SLC9A3 (ENSBBBG00000017032)	CEP72 (ENSBBBG00000004199)	TPPP (ENSBBBG00000016941)	ENSBBBG00000004187	BRD9 (ENSBBBG00000016929)	TRIP13 (ENSBBBG00000016892)	SLC12A7 (ENSBBBG00000008296) #8	SLC6A19 (ENSBBBG00000016767) #9	SLC6A18 (ENSBBBG00000000711) #10	CLPTM1L (ENSBBBG00000016737) #12	SLC6A3 (ENSBBBG00000016720) #13	LPCAT1 (ENSBBBG00000016651) #14	ENSBBBG00000004122 #15	NDUFS6 (ENSBBBG00000016621) #16	ADAMTS16 (ENSBBBG00000004110) #21	ENSBBBG00000000735 #22	ENSBBBG00000000745	MED10 (ENSBBBG00000000761) #23	NSUN2 (ENSBBBG00000016571) #25	TENT4A (ENSBBBG00000016484) #27	ADCY2 (ENSBBBG00000016455) #28	ENSBBBG00000016418	CFAP90 (ENSBBBG00000016415) #29	FASTKD3 (ENSBBBG00000016411) #30	MTRR (ENSBBBG00000016406) #31
Atlantogenata	ANCESTRAL SPECIES					ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Xenarthra	ANCESTRAL SPECIES	1746															ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Armadillo	MODERN SPECIES	276														ENSDNOG00000036615	ADAMTS16 (ENSDNOG00000001714) #21	ICE1 (ENSDNOG00000048762) #22
Sloth	MODERN SPECIES	5120																ENSCHOG00000004455 #22
Afrotheria	ANCESTRAL SPECIES	139				ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Tenrec	MODERN SPECIES	5597																ENSETEG00000010960 #22
Afrotheria_a	ANCESTRAL SPECIES	140				ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37	ENSGT00390000012731.a.a
Elephant	MODERN SPECIES	526	DAP (ENSLAFG00000011209)	ANKRD33B (ENSLAFG00000011206)	ENSLAFG00000029202	SLC6A19 (ENSLAFG00000005422) #9	SLC6A18 (ENSLAFG00000006023) #10	TERT (ENSLAFG00000013077) #11	CLPTM1L (ENSLAFG00000012245) #12	SLC6A3 (ENSLAFG00000003040) #13	ENSLAFG00000011431 #14	ENSLAFG00000005707 #15	ENSLAFG00000005708 #16	IRX4 (ENSLAFG00000000460) #17	IRX2 (ENSLAFG00000031893) #18	IRX1 (ENSLAFG00000012017) #20	ADAMTS16 (ENSLAFG00000011253) #21	ICE1 (ENSLAFG00000001334) #22	MED10 (ENSLAFG00000016146) #23	UBE2QL1 (ENSLAFG00000027273) #24	NSUN2 (ENSLAFG00000009411) #25	ENSLAFG00000012945 #26	TENT4A (ENSLAFG00000004787) #27	ADCY2 (ENSLAFG00000004954) #28	FASTKD3 (ENSLAFG00000016130) #30	MTRR (ENSLAFG00000018552) #31	SEMA5A (ENSLAFG00000003820) #32	ATPSCKMT (ENSLAFG00000022748) #34	CCT5 (ENSLAFG00000006113) #35	ENSLAFG00000028191 #36	MARCHF6 (ENSLAFG00000007224) #37	ROPN1L (ENSLAFG00000011860)
Hyrax	MODERN SPECIES	4725																ENSPCAG00000002369 #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775.k #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000155584.db	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775.k #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000155584.db	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775.k #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000017432	ENSGT00440000033589.d #7	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775.k #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01100000263477.E #33	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183 #36	ENSGT00940000155171.a.b #37
Common wonbat	MODERN SPECIES	1028	SLC12A7 (ENSVURG00010021732) #8	SLC6A19 (ENSVURG00010021711) #9	SLC6A18 (ENSVURG00010021703) #10	ENSVURG00010021696 #11	CLPTM1L (ENSVURG00010021677) #12	SLC6A3 (ENSVURG00010021583) #13	LPCAT1 (ENSVURG00010021564) #14	ENSVURG00010021553	MRPL36 (ENSVURG00010021548) #15	ENSVURG00010021544 #16	IRX4 (ENSVURG00010021536) #17	IRX2 (ENSVURG00010021523) #18	IRX1 (ENSVURG00010021515) #20	ENSVURG00010021507	ENSVURG00010021496 #21	ENSVURG00010021480 #22	MED10 (ENSVURG00010021467) #23	UBE2QL1 (ENSVURG00010021464) #24	NSUN2 (ENSVURG00010021458) #25	SRD5A1 (ENSVURG00010021454) #26	TENT4A (ENSVURG00010021451) #27	ENSVURG00010021441	ADCY2 (ENSVURG00010021414) #28	CFAP90 (ENSVURG00010021395) #29	FASTKD3 (ENSVURG00010021388) #30	MTRR (ENSVURG00010021377) #31	ENSVURG00010021370	SEMA5A (ENSVURG00010021360) #32	ENSVURG00010021351 #33	ENSVURG00010021349 #33	ATPSCKMT (ENSVURG00010021339) #34
koala	MODERN SPECIES	103															ADAMTS16 (ENSPCIG00000012782) #21	ENSPCIG00000012781 #22	ENSPCIG00000017587	ENSPCIG00000011859 #24	NSUN2 (ENSPCIG00000011853) #25	SRD5A1 (ENSPCIG00000011847) #26	TENT4A (ENSPCIG00000017056) #27	ADCY2 (ENSPCIG00000014091) #28	CFAP90 (ENSPCIG00000014077) #29	FASTKD3 (ENSPCIG00000013486) #30	MTRR (ENSPCIG00000013485) #31	ENSPCIG00000037244	SEMA5A (ENSPCIG00000023524) #32	ENSPCIG00000026977 #33	ENSPCIG00000032710 #33	ENSPCIG00000036637 #33	ENSPCIG00000032320
Wallaby	MODERN SPECIES	6959																ENSMEUG00000008560 #22
Tasmanian devil	MODERN SPECIES		SLC12A7 (ENSSHAG00000014012) #8	SLC6A19 (ENSSHAG00000015547) #9	SLC6A18 (ENSSHAG00000015730) #10	ENSSHAG00000015951 #11	CLPTM1L (ENSSHAG00000016099) #12	SLC6A3 (ENSSHAG00000016299) #13	LPCAT1 (ENSSHAG00000016583) #14	MRPL36 (ENSSHAG00000024894) #15	NDUFS6 (ENSSHAG00000028770) #16	IRX4 (ENSSHAG00000023225) #17	IRX2 (ENSSHAG00000001675) #18	IRX1 (ENSSHAG00000013463) #20	ENSSHAG00000018018	ADAMTS16 (ENSSHAG00000018320) #21	ENSSHAG00000027523	ENSSHAG00000018751 #22	MED10 (ENSSHAG00000020951) #23	ENSSHAG00000030712 #24	NSUN2 (ENSSHAG00000011056) #25	SRD5A1 (ENSSHAG00000025750) #26	TENT4A (ENSSHAG00000012100) #27	ADCY2 (ENSSHAG00000002581) #28	CFAP90 (ENSSHAG00000027105) #29	FASTKD3 (ENSSHAG00000006423) #30	MTRR (ENSSHAG00000006711) #31	ENSSHAG00000004959	SEMA5A (ENSSHAG00000025721) #32	ENSSHAG00000030169 #33	ATPSCKMT (ENSSHAG00000031295) #34	ENSSHAG00000025425 #35	CMBL (ENSSHAG00000027779) #36
Opossum	MODERN SPECIES	2	SLC6A19 (ENSMODG00000000905) #9	SLC6A18 (ENSMODG00000000921) #10	ENSMODG00000000966 #11	CLPTM1L (ENSMODG00000000991) #12	SLC6A3 (ENSMODG00000001344) #13	LPCAT1 (ENSMODG00000001420) #14	ENSMODG00000050731	MRPL36 (ENSMODG00000025120) #15	ENSMODG00000001425 #16	IRX4 (ENSMODG00000001437) #17	IRX2 (ENSMODG00000001446) #18	ENSMODG00000041368	IRX1 (ENSMODG00000001451) #20	ENSMODG00000040922	ADAMTS16 (ENSMODG00000001523) #21	ENSMODG00000001540 #22	ENSMODG00000043624	MED10 (ENSMODG00000002025) #23	ENSMODG00000028962 #24	NSUN2 (ENSMODG00000002039) #25	SRD5A1 (ENSMODG00000002043) #26	TENT4A (ENSMODG00000002052) #27	ADCY2 (ENSMODG00000002081) #28	ENSMODG00000028752	C5orf49 (ENSMODG00000044895) #29	FASTKD3 (ENSMODG00000002094) #30	MTRR (ENSMODG00000002110) #31	ENSMODG00000029155	ENSMODG00000025110	SEMA5A (ENSMODG00000002138) #32	ENSMODG00000002327
Platypus	MODERN SPECIES	86	FHOD3 (ENSOANG00000014458)	MOCOS (ENSOANG00000014461)	PTPN3 (ENSOANG00000014464)	EPB41L4B (ENSOANG00000001740)	TMEM245 (ENSOANG00000001742)	INO80C (ENSOANG00000001743)	GALNT1 (ENSOANG00000001744)	ENSOANG00000001745	RPRD1A (ENSOANG00000001746)	ENSOANG00000047544	ENSOANG00000043142 #16	IRX4 (ENSOANG00000039153) #17	IRX2 (ENSOANG00000001748) #18	IRX1 (ENSOANG00000001749) #20	ADAMTS16 (ENSOANG00000001750) #21	ENSOANG00000001751 #22	MED10 (ENSOANG00000001752) #23	ENSOANG00000001753 #24	NSUN2 (ENSOANG00000009243) #25	SRD5A1 (ENSOANG00000041870) #26	TENT4A (ENSOANG00000011579) #27	ADCY2 (ENSOANG00000011580) #28	C5orf49 (ENSOANG00000036348) #29	MTRR (ENSOANG00000011583) #31	SEMA5A (ENSOANG00000011586) #32	ATPSCKMT (ENSOANG00000011590) #34	CCT5 (ENSOANG00000011592) #35	CMBL (ENSOANG00000011594) #36	MARCHF6 (ENSOANG00000011595) #37	ROPN1L (ENSOANG00000011597)	ENSOANG00000011598
Sauria	ANCESTRAL SPECIES		ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00390000000183.g.a #36	ENSGT00390000000183.g.b #36
Lepidosauria	DUPLICATION
Lepidosauria	ANCESTRAL SPECIES	105				ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT01030000235349	ENSGT00390000014771.a #34	ENSGT00550000074988 #35
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000156996
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000166261.a
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000011409 #10	ENSPMRG00000011548 #10	TERT (ENSPMRG00000011747) #11	CLPTM1L (ENSPMRG00000011767) #12	LPCAT1 (ENSPMRG00000011784) #14	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794) #16	ENSPMRG00000011796 #17	ENSPMRG00000011802 #18	IRX2 (ENSPMRG00000011806) #18	ENSPMRG00000011810	IRX1 (ENSPMRG00000011814) #20	ADAMTS16 (ENSPMRG00000011831) #21	ENSPMRG00000011923	ENSPMRG00000011964 #22	ENSPMRG00000011956 #22	MED10 (ENSPMRG00000011969) #23	UBE2QL1 (ENSPMRG00000011973) #24	NSUN2 (ENSPMRG00000012047) #25	SRD5A1 (ENSPMRG00000012693) #26	NAA16 (ENSPMRG00000012722)	ENSPMRG00000012863	RGCC (ENSPMRG00000012868)	VWA8 (ENSPMRG00000012925)	DGKH (ENSPMRG00000013494)	AKAP11 (ENSPMRG00000014100)	TNFSF11 (ENSPMRG00000014191)	ENSPMRG00000014214	DNAJC15 (ENSPMRG00000005799)	ENOX1 (ENSPMRG00000005813)	ENSPMRG00000005845
Argentine black and white tegu	MODERN SPECIES	36	SLC12A7 (ENSSMRG00000015175) #8	ENSSMRG00000015179	SLC6A19 (ENSSMRG00000015180) #9	SLC6A18 (ENSSMRG00000015183) #10	TERT (ENSSMRG00000015501) #11	CLPTM1L (ENSSMRG00000015502) #12	LPCAT1 (ENSSMRG00000015505) #14	ENSSMRG00000015507	ENSSMRG00000015508 #16	IRX4 (ENSSMRG00000015509) #17	IRX2 (ENSSMRG00000015513) #18	ENSSMRG00000015516	IRX1 (ENSSMRG00000015517) #20	ENSSMRG00000015520	ADAMTS16 (ENSSMRG00000015527) #21	ICE1 (ENSSMRG00000015530) #22	MED10 (ENSSMRG00000015532) #23	UBE2QL1 (ENSSMRG00000015533) #24	NSUN2 (ENSSMRG00000015535) #25	SRD5A1 (ENSSMRG00000015538) #26	TENT4A (ENSSMRG00000015539) #27	ADCY2 (ENSSMRG00000015544) #28	ENSSMRG00000016193	CFAP90 (ENSSMRG00000016195) #29	FASTKD3 (ENSSMRG00000016197) #30	MTRR (ENSSMRG00000016199) #31	SEMA5A (ENSSMRG00000016201) #32	ATPSCKMT (ENSSMRG00000016204) #34	CCT5 (ENSSMRG00000016206) #35	ENSSMRG00000016209	CST3 (ENSSMRG00000016211)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Indian cobra	MODERN SPECIES	2	TMEFF1 (ENSNNAG00000001223)	CAVIN4 (ENSNNAG00000001218)	SLC12A7 (ENSNNAG00000001119) #8	SLC6A19 (ENSNNAG00000001042) #9	SLC6A18 (ENSNNAG00000000999) #10	TERT (ENSNNAG00000000941) #11	CLPTM1L (ENSNNAG00000000922) #12	LPCAT1 (ENSNNAG00000000898) #14	ENSNNAG00000000889	NDUFS6 (ENSNNAG00000000877) #16	IRX4 (ENSNNAG00000000859) #17	IRX2 (ENSNNAG00000000840) #18	IRX1 (ENSNNAG00000000813) #20	ADAMTS16 (ENSNNAG00000014273) #21	ENSNNAG00000014247	ENSNNAG00000014147 #22	MED10 (ENSNNAG00000014120) #23	UBE2QL1 (ENSNNAG00000014111) #24	NSUN2 (ENSNNAG00000014006) #25	SRD5A1 (ENSNNAG00000013987) #26	TENT4A (ENSNNAG00000013975) #27	ADCY2 (ENSNNAG00000012796) #28	CFAP90 (ENSNNAG00000012693) #29	FASTKD3 (ENSNNAG00000012636) #30	MTRR (ENSNNAG00000012393) #31	SEMA5A (ENSNNAG00000012300) #32	ENSNNAG00000012269	CCT5 (ENSNNAG00000012242) #35	ENSNNAG00000012223	ENSNNAG00000012207	ENSNNAG00000012195
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000155999
Eastern brown snake	MODERN SPECIES	15	CAVIN4 (ENSPTXG00000004134)	SLC12A7 (ENSPTXG00000004132) #8	SLC6A19 (ENSPTXG00000004129) #9	ENSPTXG00000004128 #10	TERT (ENSPTXG00000004127) #11	ENSPTXG00000004126	CLPTM1L (ENSPTXG00000004125) #12	LPCAT1 (ENSPTXG00000004123) #14	ENSPTXG00000004122	NDUFS6 (ENSPTXG00000004121) #16	IRX4 (ENSPTXG00000004120) #17	IRX2 (ENSPTXG00000004119) #18	IRX1 (ENSPTXG00000004118) #20	ADAMTS16 (ENSPTXG00000004117) #21	ENSPTXG00000004116 #22	ENSPTXG00000004115 #22	MED10 (ENSPTXG00000004114) #23	UBE2QL1 (ENSPTXG00000004113) #24	NSUN2 (ENSPTXG00000003936) #25	SRD5A1 (ENSPTXG00000003935) #26	TENT4A (ENSPTXG00000003934) #27	ADCY2 (ENSPTXG00000003858) #28	CFAP90 (ENSPTXG00000003856) #29	FASTKD3 (ENSPTXG00000003854) #30	MTRR (ENSPTXG00000003852) #31	SEMA5A (ENSPTXG00000003851) #32	ATPSCKMT (ENSPTXG00000003849) #34	CCT5 (ENSPTXG00000003847) #35	ENSPTXG00000003846	ENSPTXG00000003845	FOXA2 (ENSPTXG00000003844)
Mainland tiger snake	MODERN SPECIES	45	ABITRAM (ENSNSUG00000010032)	SLC39A6 (ENSNSUG00000010034)	TMEFF1 (ENSNSUG00000010036)	CAVIN4 (ENSNSUG00000010038)	SLC12A7 (ENSNSUG00000010041) #8	SLC6A19 (ENSNSUG00000010044) #9	TERT (ENSNSUG00000010047) #11	CLPTM1L (ENSNSUG00000010147) #12	LPCAT1 (ENSNSUG00000010206) #14	ENSNSUG00000010207	ENSNSUG00000010208 #16	IRX4 (ENSNSUG00000010212) #17	IRX2 (ENSNSUG00000010220) #18	IRX1 (ENSNSUG00000010225) #20	ADAMTS16 (ENSNSUG00000010227) #21	ENSNSUG00000010240 #22	MED10 (ENSNSUG00000010241) #23	UBE2QL1 (ENSNSUG00000010242) #24	NSUN2 (ENSNSUG00000010245) #25	SRD5A1 (ENSNSUG00000010410) #26	ENSNSUG00000010413	TENT4A (ENSNSUG00000010414) #27	ADCY2 (ENSNSUG00000010421) #28	ENSNSUG00000010690 #29	FASTKD3 (ENSNSUG00000010691) #30	MTRR (ENSNSUG00000010692) #31	SEMA5A (ENSNSUG00000010721) #32	ATPSCKMT (ENSNSUG00000010722) #34	CCT5 (ENSNSUG00000010732) #35	ENSNSUG00000010733	ENSNSUG00000010734
Blue-lipped sea krait	MODERN SPECIES	10728																ENSLLTG00000011284 #22
Lizard	MODERN SPECIES	825															ADAMTS16 (ENSACAG00000000648) #21	ICE1 (ENSACAG00000039643) #22	MED10 (ENSACAG00000000792) #23	UBE2QL1 (ENSACAG00000038943) #24	ENSACAG00000005628	ENSACAG00000005665	HENMT1 (ENSACAG00000005696)	ENSACAG00000028682	ENSACAG00000042891	STXBP3 (ENSACAG00000005770)	ENSACAG00000037276	ENSACAG00000036406	GPSM2 (ENSACAG00000006029)	CLCC1 (ENSACAG00000006088)	WDR47 (ENSACAG00000006120)	CAMSAP2 (ENSACAG00000006193)	DDX59 (ENSACAG00000006225)
tuatara	MODERN SPECIES	1802														ADAMTS16 (ENSSPUG00000014801) #21	ENSSPUG00000014789	ENSSPUG00000014759 #22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00950000183199.b.b #22
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000164218
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00390000010866 #15	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000156387	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657 #8	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT01030000234574.A.a #14	ENSGT00940000173658	ENSGT00390000015775 #16	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a.h #34	ENSGT00550000074988 #35	ENSGT00940000154755	ENSGT00940000167312
Eastern brown snake	MODERN SPECIES	15	TMEFF1 (ENSPTXG00000004135)	CAVIN4 (ENSPTXG00000004134)	SLC12A7 (ENSPTXG00000004132) #8	SLC6A19 (ENSPTXG00000004129) #9	ENSPTXG00000004128 #10	TERT (ENSPTXG00000004127) #11	ENSPTXG00000004126	CLPTM1L (ENSPTXG00000004125) #12	LPCAT1 (ENSPTXG00000004123) #14	ENSPTXG00000004122	NDUFS6 (ENSPTXG00000004121) #16	IRX4 (ENSPTXG00000004120) #17	IRX2 (ENSPTXG00000004119) #18	IRX1 (ENSPTXG00000004118) #20	ADAMTS16 (ENSPTXG00000004117) #21	ENSPTXG00000004116 #22	ENSPTXG00000004115 #22	MED10 (ENSPTXG00000004114) #23	UBE2QL1 (ENSPTXG00000004113) #24	NSUN2 (ENSPTXG00000003936) #25	SRD5A1 (ENSPTXG00000003935) #26	TENT4A (ENSPTXG00000003934) #27	ADCY2 (ENSPTXG00000003858) #28	CFAP90 (ENSPTXG00000003856) #29	FASTKD3 (ENSPTXG00000003854) #30	MTRR (ENSPTXG00000003852) #31	SEMA5A (ENSPTXG00000003851) #32	ATPSCKMT (ENSPTXG00000003849) #34	CCT5 (ENSPTXG00000003847) #35	ENSPTXG00000003846	ENSPTXG00000003845
Laterata	ANCESTRAL SPECIES																	ENSGT00950000183199.b.b #22
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000011377 #10	ENSPMRG00000011409 #10	ENSPMRG00000011548 #10	TERT (ENSPMRG00000011747) #11	CLPTM1L (ENSPMRG00000011767) #12	LPCAT1 (ENSPMRG00000011784) #14	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794) #16	ENSPMRG00000011796 #17	ENSPMRG00000011802 #18	IRX2 (ENSPMRG00000011806) #18	ENSPMRG00000011810	IRX1 (ENSPMRG00000011814) #20	ADAMTS16 (ENSPMRG00000011831) #21	ENSPMRG00000011923	ENSPMRG00000011964 #22	ENSPMRG00000011956 #22	MED10 (ENSPMRG00000011969) #23	UBE2QL1 (ENSPMRG00000011973) #24	NSUN2 (ENSPMRG00000012047) #25	SRD5A1 (ENSPMRG00000012693) #26	NAA16 (ENSPMRG00000012722)	ENSPMRG00000012863	RGCC (ENSPMRG00000012868)	VWA8 (ENSPMRG00000012925)	DGKH (ENSPMRG00000013494)	AKAP11 (ENSPMRG00000014100)	TNFSF11 (ENSPMRG00000014191)	ENSPMRG00000014214	DNAJC15 (ENSPMRG00000005799)	ENOX1 (ENSPMRG00000005813)
Archelosauria	ANCESTRAL SPECIES	5															ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.g.b #36
Cryptodira	ANCESTRAL SPECIES	46	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #20	ENSGT00940000161198 #18	ENSGT00940000158596 #17	ENSGT00390000015775 #16	ENSGT00390000010866 #15	ENSGT01030000234574.A.a #14	ENSGT00530000063461.A #12	ENSGT00390000018531 #11	ENSGT00940000158906 #10	ENSGT00940000154896 #9	ENSGT00940000157657 #8	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.h #36
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #20	ENSGT00940000161198 #18	ENSGT00940000158596 #17	ENSGT00390000015775 #16	ENSGT00390000010866 #15	ENSGT01030000234574.A.a #14	ENSGT00530000063461.A #12	ENSGT00390000018531 #11	ENSGT00940000158906 #10	ENSGT00940000154896 #9	ENSGT00940000156325	ENSGT00940000157657 #8	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.h #36
Emydidae	ANCESTRAL SPECIES	58	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #20	ENSGT00940000161198 #18	ENSGT00940000158596 #17	ENSGT00390000015775 #16	ENSGT00390000010866 #15	ENSGT01030000234574.A.a #14	ENSGT00530000063461.A #12	ENSGT00390000018531 #11	ENSGT00940000158906 #10	ENSGT00940000154896 #9	ENSGT00940000157657 #8	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.h #36
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2575																ENSTMTG00000013521 #22
Three-toed box turtle	MODERN SPECIES	2572																ENSTMTG00000013482 #22
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	280													ENSTMTG00000009916	ENSTMTG00000010300 #8	ENSTMTG00000010347 #21	ENSTMTG00000010368 #22	ENSTMTG00000010389 #22	MED10 (ENSTMTG00000010416) #23	UBE2QL1 (ENSTMTG00000010432) #24	NSUN2 (ENSTMTG00000003351) #25	SRD5A1 (ENSTMTG00000003412) #26	ENSTMTG00000003488	TENT4A (ENSTMTG00000003526) #27	ADCY2 (ENSTMTG00000003668) #28	CFAP90 (ENSTMTG00000004150) #29	FASTKD3 (ENSTMTG00000004174) #30	MTRR (ENSTMTG00000004193) #31	SEMA5A (ENSTMTG00000004239) #32	ATPSCKMT (ENSTMTG00000004376) #34	CCT5 (ENSTMTG00000004387) #35	SBK2 (ENSTMTG00000004421)
Three-toed box turtle	MODERN SPECIES	280												ENSTMTG00000009916	ENSTMTG00000010300 #8	ENSTMTG00000010347 #21	ENSTMTG00000010368 #22	ENSTMTG00000010389 #22	MED10 (ENSTMTG00000010416) #23	UBE2QL1 (ENSTMTG00000010432) #24	NSUN2 (ENSTMTG00000003351) #25	SRD5A1 (ENSTMTG00000003412) #26	ENSTMTG00000003488	TENT4A (ENSTMTG00000003526) #27	ADCY2 (ENSTMTG00000003668) #28	CFAP90 (ENSTMTG00000004150) #29	FASTKD3 (ENSTMTG00000004174) #30	MTRR (ENSTMTG00000004193) #31	SEMA5A (ENSTMTG00000004239) #32	ATPSCKMT (ENSTMTG00000004376) #34	CCT5 (ENSTMTG00000004387) #35	SBK2 (ENSTMTG00000004421)	ENSTMTG00000004453 #36
painted turtle	MODERN SPECIES	1159																ENSCPBG00000016289 #22
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #20	ENSGT00940000161198 #18	ENSGT00940000158596 #17	ENSGT00390000015775 #16	ENSGT00390000010866 #15	ENSGT01030000234574.A.a #14	ENSGT00530000063461.A #12	ENSGT00390000018531 #11	ENSGT00940000158906 #10	ENSGT00940000154896 #9	ENSGT00940000156325	ENSGT00940000157657 #8	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.h #36
Goode s thornscrub tortoise	MODERN SPECIES	11	GALNT12 (ENSGEVG00005001835)	ANKS6 (ENSGEVG00005001910)	IRX1 (ENSGEVG00005001973) #20	IRX2 (ENSGEVG00005001979) #18	IRX4 (ENSGEVG00005001991) #17	NDUFS6 (ENSGEVG00005002002) #16	MRPL36 (ENSGEVG00005002011) #15	LPCAT1 (ENSGEVG00005002021) #14	CLPTM1L (ENSGEVG00005002056) #12	TERT (ENSGEVG00005002124) #11	SLC6A18 (ENSGEVG00005002163) #10	SLC6A19 (ENSGEVG00005002227) #9	ENSGEVG00005002238	NFX1 (ENSGEVG00005002297)	SLC12A7 (ENSGEVG00005002517) #8	ICE1 (ENSGEVG00005002555) #22	MED10 (ENSGEVG00005002588) #23	UBE2QL1 (ENSGEVG00005002594) #24	NSUN2 (ENSGEVG00005002603) #25	SRD5A1 (ENSGEVG00005002624) #26	ENSGEVG00005002633	TENT4A (ENSGEVG00005002646) #27	ADCY2 (ENSGEVG00005002733) #28	ENSGEVG00005002928	CFAP90 (ENSGEVG00005002941) #29	FASTKD3 (ENSGEVG00005002955) #30	MTRR (ENSGEVG00005002968) #31	ENSGEVG00005002987	SEMA5A (ENSGEVG00005003004) #32	ATPSCKMT (ENSGEVG00005003039) #34	CCT5 (ENSGEVG00005003051) #35
Abingdon island giant tortoise	MODERN SPECIES	2256													NFX1 (ENSCABG00000008184)	ENSCABG00000008899 #8	ENSCABG00000008902 #8	ENSCABG00000008906 #22
Chinese turtle	MODERN SPECIES	1365															ENSPSIG00000008803 #8	ENSPSIG00000014439 #22	ENSPSIG00000000027	MED10 (ENSPSIG00000015211) #23	UBE2QL1 (ENSPSIG00000015214) #24	NSUN2 (ENSPSIG00000015282) #25	SRD5A1 (ENSPSIG00000015950) #26	TENT4A (ENSPSIG00000015964) #27	ENSPSIG00000005586	ENSPSIG00000005902	ENSPSIG00000006888	ENSPSIG00000007164	FBXO3 (ENSPSIG00000007269)	LMO2 (ENSPSIG00000007568)	CAPRIN1 (ENSPSIG00000007750)
Archosauria	ANCESTRAL SPECIES		ENSGT00530000067915	ENSGT00390000020276.rb	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.g.b #36
Australian saltwater crocodile	MODERN SPECIES		NR4A3 (ENSCPRG00005013476)	SEC61B (ENSCPRG00005013467)	ALG2 (ENSCPRG00005013466)	ENSCPRG00005013457	GLIPR2 (ENSCPRG00005013455)	ENSCPRG00005013453	RECK (ENSCPRG00005013445)	ENSCPRG00005013435	TGFBR1 (ENSCPRG00005013433)	ENSCPRG00005013429	SLC9A3 (ENSCPRG00005013422)	CEP72 (ENSCPRG00005013408)	TPPP (ENSCPRG00005013403)	SLC12A7 (ENSCPRG00005012667) #8	NFX1 (ENSCPRG00005012491)	ENSCPRG00005012478 #22	TNS3 (ENSCPRG00005012409)	IGFBP3 (ENSCPRG00005012380)	IGFBP1 (ENSCPRG00005012333)	ADCY1 (ENSCPRG00005012310)	RAMP3 (ENSCPRG00005012244)	PDIA4 (ENSCPRG00005012218)	EZH2 (ENSCPRG00005012115)	CUL1 (ENSCPRG00005012085)	CNTNAP2 (ENSCPRG00005012040)	TPK1 (ENSCPRG00005011870)	SEC61G (ENSCPRG00005011725)	ENSCPRG00005011724	EGFR (ENSCPRG00005011649)	LANCL2 (ENSCPRG00005011572)	VOPP1 (ENSCPRG00005011565)
Aves	ANCESTRAL SPECIES	24	ENSGT00550000075033	ENSGT00530000067915	ENSGT00390000020276.rb	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT01030000234607.A.a.a.a #30	ENSGT00940000155822 #31	ENSGT00940000158036 #32	ENSGT00390000014771.a #34	ENSGT00550000074988 #35	ENSGT00940000161663	ENSGT00390000000183.g.a #36	ENSGT00390000000183.g.b #36
Neognathae	ANCESTRAL SPECIES		ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.a.b	ENSGT00960000190022	ENSGT00960000189317	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.b.a.a.a	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT00940000159827	ENSGT00390000005586	ENSGT00940000155331.A	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Great tit	MODERN SPECIES	11	RPS21 (ENSPMJG00000018126)	POU6F2 (ENSPMJG00000018124)	VPS41 (ENSPMJG00000018123)	AMPH (ENSPMJG00000018122)	ENSPMJG00000018121	ENSPMJG00000018120	ENSPMJG00000018067	LRRFIP2 (ENSPMJG00000018066)	GOLGA4 (ENSPMJG00000018065)	ITGA9 (ENSPMJG00000018064)	NEUROD6 (ENSPMJG00000018063)	ENSPMJG00000018062	PDE1C (ENSPMJG00000018061)	ENSPMJG00000018060 #8	NFX1 (ENSPMJG00000018059)	ENSPMJG00000018057 #22	HUS1 (ENSPMJG00000018055)	YAE1 (ENSPMJG00000018053)	ENSPMJG00000018052	RALA (ENSPMJG00000018050)	CDK13 (ENSPMJG00000018048)	MPLKIP (ENSPMJG00000018047)	SUGCT (ENSPMJG00000018046)	INHBA (ENSPMJG00000018042)	GLI3 (ENSPMJG00000018041)	C7orf25 (ENSPMJG00000018040)	PSMA2 (ENSPMJG00000018039)	MRPL32 (ENSPMJG00000018038)	TNS3 (ENSPMJG00000018037)	COA1 (ENSPMJG00000018036)	STK17A (ENSPMJG00000018035)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.a.b	ENSGT00960000190022	ENSGT00960000189317	ENSGT00940000153143.a.b.a.a.b	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT00940000159827	ENSGT00390000005586	ENSGT00940000155331.A	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Passeriformes_g	ANCESTRAL SPECIES	3												ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Passeroidea	ANCESTRAL SPECIES	2												ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Zebra finch	MODERN SPECIES	12	ENSTGUG00000026378	ADNP2 (ENSTGUG00000006688)	RECK (ENSTGUG00000006692)	TGFBR1 (ENSTGUG00000006726)	COL15A1 (ENSTGUG00000025718)	TRIP13 (ENSTGUG00000006756)	BRD9 (ENSTGUG00000006776)	TPPP (ENSTGUG00000006796)	SLC9A3 (ENSTGUG00000006804)	LRRC14B (ENSTGUG00000006854)	PDE1C (ENSTGUG00000006857)	PPP1R17 (ENSTGUG00000006926)	ENSTGUG00000019076	ENSTGUG00000006931 #8	NFX1 (ENSTGUG00000007055)	ENSTGUG00000007087 #22	HUS1 (ENSTGUG00000007091)	TNS3 (ENSTGUG00000007104)	RAMP3 (ENSTGUG00000025072)	ADCY1 (ENSTGUG00000007142)	IGFBP1 (ENSTGUG00000007176)	IGFBP3 (ENSTGUG00000028736)	CDH18 (ENSTGUG00000007189)	BASP1 (ENSTGUG00000007269)	MYO10 (ENSTGUG00000007271)	ZNF622 (ENSTGUG00000007377)	MARCHF11 (ENSTGUG00000007392)	FBXL7 (ENSTGUG00000027230)	ANKH (ENSTGUG00000007404)	OTULIN (ENSTGUG00000007427)	OTULINL (ENSTGUG00000007437)
Common canary	MODERN SPECIES	36	CMTM3 (ENSSCAG00000010838)	TK2 (ENSSCAG00000010828)	ENSSCAG00000010823	CDH5 (ENSSCAG00000010812)	CDH11 (ENSSCAG00000010804)	ENSSCAG00000010799	ENSSCAG00000010795	SNRPA (ENSSCAG00000010792)	ENSSCAG00000010787	NEUROD6 (ENSSCAG00000010784)	ENSSCAG00000010778	PDE1C (ENSSCAG00000010755)	PPP1R17 (ENSSCAG00000010734)	ENSSCAG00000010722 #8	NFX1 (ENSSCAG00000010694)	ENSSCAG00000010663 #22	ENSSCAG00000010553	ARPP21 (ENSSCAG00000010517)	STAC (ENSSCAG00000010507)	DCLK3 (ENSSCAG00000010500)	TRANK1 (ENSSCAG00000010488)	MLH1 (ENSSCAG00000010474)	STARD3NL (ENSSCAG00000010471)	EPDR1 (ENSSCAG00000010467)	SFRP4 (ENSSCAG00000010462)	ENSSCAG00000010456	ENSSCAG00000010449	ENSSCAG00000010445	GPR141 (ENSSCAG00000010442)	ELMO1 (ENSSCAG00000010176)	AOAH (ENSSCAG00000010102)
Medium ground finch	MODERN SPECIES	142												PPP1R17 (ENSGFOG00000002988)	ENSGFOG00000002968	ENSGFOG00000002808 #8	NFX1 (ENSGFOG00000002757)	ENSGFOG00000002742 #22	HUS1 (ENSGFOG00000002727)	ENSGFOG00000002721	TNS3 (ENSGFOG00000002178)	ENSGFOG00000014580	IGFBP1 (ENSGFOG00000014576)	ADCY1 (ENSGFOG00000014571)	ENSGFOG00000014568	RAMP3 (ENSGFOG00000014564)
Flycatcher	MODERN SPECIES	11	ENSFALG00000025369	YAE1 (ENSFALG00000027550)	POU6F2 (ENSFALG00000005224)	VPS41 (ENSFALG00000005238)	AMPH (ENSFALG00000012192)	ENSFALG00000012205	ENSFALG00000023119	LRRFIP2 (ENSFALG00000012219)	ENSFALG00000013077	ITGA9 (ENSFALG00000013091)	ENSFALG00000014089	PDE1C (ENSFALG00000013120)	PPP1R17 (ENSFALG00000023160)	ENSFALG00000013128 #8	ENSFALG00000013143	ENSFALG00000026671 #22	HUS1 (ENSFALG00000013176)	TNS3 (ENSFALG00000013179)	ENSFALG00000028134	ENSFALG00000013184	IGFBP1 (ENSFALG00000013189)	ADCY1 (ENSFALG00000013204)	RAMP3 (ENSFALG00000013222)	ENSFALG00000013224	SLC9A3 (ENSFALG00000013226)	TPPP (ENSFALG00000024481)	ENSFALG00000024175	BRD9 (ENSFALG00000013234)	TRIP13 (ENSFALG00000013242)	ENSFALG00000013256	ENSFALG00000013285
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Golden eagle	MODERN SPECIES	9	ENSACCG00020011964	RBFA (ENSACCG00020011987)	ADNP2 (ENSACCG00020012003)	RECK (ENSACCG00020012029)	ENSACCG00020012067	TGFBR1 (ENSACCG00020012084)	ENSACCG00020012112	ENSACCG00020012183	TRIP13 (ENSACCG00020012230)	BRD9 (ENSACCG00020012343)	TPPP (ENSACCG00020012482)	SLC9A3 (ENSACCG00020012518)	LRRC14B (ENSACCG00020012554)	ENSACCG00020012615 #8	NFX1 (ENSACCG00020012785)	ENSACCG00020012901 #22	HUS1 (ENSACCG00020012940)	TNS3 (ENSACCG00020012993)	IGFBP3 (ENSACCG00020013050)	IGFBP1 (ENSACCG00020013063)	ADCY1 (ENSACCG00020013088)	RAMP3 (ENSACCG00020013106)
Kakapo	MODERN SPECIES		ENSSHBG00005002797	ENSSHBG00005002856	CPNE4 (ENSSHBG00005002917)	MRPL3 (ENSSHBG00005002927)	NEK11 (ENSSHBG00005002944)	ENSSHBG00005002958	ENSSHBG00005002972	LARS2 (ENSSHBG00005003085)	LIMD1 (ENSSHBG00005003457)	SACM1L (ENSSHBG00005003481)	SNRPD1 (ENSSHBG00005003518)	SLC6A20 (ENSSHBG00005003531)	LZTFL1 (ENSSHBG00005003574)	ENSSHBG00005003595 #8	NFX1 (ENSSHBG00005003734)	ENSSHBG00005004278 #22	HUS1 (ENSSHBG00005004285)	TNS3 (ENSSHBG00005004318)	IGFBP3 (ENSSHBG00005004372)	IGFBP1 (ENSSHBG00005004376)	ENSSHBG00005004383	ENSSHBG00005004393	RAMP3 (ENSSHBG00005004397)	PDIA4 (ENSSHBG00005004401)	EZH2 (ENSSHBG00005004420)	CUL1 (ENSSHBG00005004427)	CNTNAP2 (ENSSHBG00005004659)	TPK1 (ENSSHBG00005013825)	ENSSHBG00005013830	SEC61G (ENSSHBG00005013838)	ENSSHBG00005000018
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000158957	ENSGT00730000111020.b.a	ENSGT00390000007302	ENSGT00940000159220	ENSGT00940000156479.a	ENSGT00940000156206	ENSGT00940000156595	ENSGT00390000005939.a.a	ENSGT00940000156245	ENSGT00390000017955.d	ENSGT00390000007346	ENSGT00940000153253.a	ENSGT00390000001263	ENSGT00940000154772.c.b	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Pink-footed goose	MODERN SPECIES	202													PAK1IP1 (ENSABRG00000013624)	ENSABRG00000013619	NFX1 (ENSABRG00000013561)	ENSABRG00000013533 #22	HUS1 (ENSABRG00000013525)	TNS3 (ENSABRG00000013486)	IGFBP3 (ENSABRG00000013479)	IGFBP1 (ENSABRG00000013476)	ADCY1 (ENSABRG00000013454)
Duck	MODERN SPECIES	10	ENSAPLG00000030801	RNF182 (ENSAPLG00000001505)	CD83 (ENSAPLG00000020318)	JARID2 (ENSAPLG00000004296)	DTNBP1 (ENSAPLG00000013450)	ENSAPLG00000025659	MYLIP (ENSAPLG00000008040)	GMPR (ENSAPLG00000007973)	ATXN1 (ENSAPLG00000029862)	RBM24 (ENSAPLG00000007828)	CAP2 (ENSAPLG00000007343)	FAM8A1 (ENSAPLG00000020765)	PAK1IP1 (ENSAPLG00000005241)	ENSAPLG00000005452	NFX1 (ENSAPLG00000005524)	ENSAPLG00000027178 #22	HUS1 (ENSAPLG00000006454)	TNS3 (ENSAPLG00000006520)	IGFBP3 (ENSAPLG00000016379)	IGFBP1 (ENSAPLG00000025569)	ADCY1 (ENSAPLG00000001037)	RAMP3 (ENSAPLG00000023187)	PDIA4 (ENSAPLG00000010645)	EZH2 (ENSAPLG00000010543)	CUL1 (ENSAPLG00000010478)	CNTNAP2 (ENSAPLG00000010463)	ENSAPLG00000022224	ENSAPLG00000017666	TPK1 (ENSAPLG00000002852)	ENSAPLG00000021755	SEC61G (ENSAPLG00000002944)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	11	ENSCJPG00005017997	ENSCJPG00005017998	RBFA (ENSCJPG00005017999)	ADNP2 (ENSCJPG00005018000)	RECK (ENSCJPG00005018001)	TGFBR1 (ENSCJPG00005018020)	ENSCJPG00005018021	LRRC14B (ENSCJPG00005018023)	SLC9A3 (ENSCJPG00005018024)	TPPP (ENSCJPG00005018028)	BRD9 (ENSCJPG00005018029)	TRIP13 (ENSCJPG00005018033)	SLC12A7 (ENSCJPG00005018048) #8	NFX1 (ENSCJPG00005018637)	ENSCJPG00005018728 #22	ENSCJPG00005018729 #22	HUS1 (ENSCJPG00005018730)	TNS3 (ENSCJPG00005018731)	IGFBP3 (ENSCJPG00005019177)	IGFBP1 (ENSCJPG00005019178)	ADCY1 (ENSCJPG00005000050)	ENSCJPG00005000104	ENSCJPG00005000137	SEC61G (ENSCJPG00005000142)	EGFR (ENSCJPG00005000163)	LANCL2 (ENSCJPG00005000198)	VOPP1 (ENSCJPG00005000210)	BLVRA (ENSCJPG00005000222)	ENSCJPG00005000233	STK17A (ENSCJPG00005000239)	HECW1 (ENSCJPG00005000252)
Japanese quail	MODERN SPECIES	11	ENSCJPG00005017995	ENSCJPG00005017997	ENSCJPG00005017998	RBFA (ENSCJPG00005017999)	ADNP2 (ENSCJPG00005018000)	RECK (ENSCJPG00005018001)	TGFBR1 (ENSCJPG00005018020)	ENSCJPG00005018021	LRRC14B (ENSCJPG00005018023)	SLC9A3 (ENSCJPG00005018024)	TPPP (ENSCJPG00005018028)	BRD9 (ENSCJPG00005018029)	TRIP13 (ENSCJPG00005018033)	SLC12A7 (ENSCJPG00005018048) #8	NFX1 (ENSCJPG00005018637)	ENSCJPG00005018728 #22	ENSCJPG00005018729 #22	HUS1 (ENSCJPG00005018730)	TNS3 (ENSCJPG00005018731)	IGFBP3 (ENSCJPG00005019177)	IGFBP1 (ENSCJPG00005019178)	ADCY1 (ENSCJPG00005000050)	ENSCJPG00005000104	ENSCJPG00005000137	SEC61G (ENSCJPG00005000142)	EGFR (ENSCJPG00005000163)	LANCL2 (ENSCJPG00005000198)	VOPP1 (ENSCJPG00005000210)	BLVRA (ENSCJPG00005000222)	ENSCJPG00005000233	STK17A (ENSCJPG00005000239)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000010779.a.b.a	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657 #8	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Turkey	DUPLICATION
Turkey	MODERN SPECIES	22													ENSMGAG00000001054	ENSMGAG00000022268	ENSMGAG00000001256	ENSMGAG00000020769 #22	ENSMGAG00000001202	ENSMGAG00000022584 #22	ENSMGAG00000001538	PDIA4 (ENSMGAG00000001335)	EZH2 (ENSMGAG00000001370)	CUL1 (ENSMGAG00000001436)	CNTNAP2 (ENSMGAG00000001546)	TPK1 (ENSMGAG00000001560)	ENSMGAG00000001792	ENSMGAG00000017931	SLC12A7 (ENSMGAG00000001576) #8	TRIP13 (ENSMGAG00000001806)	BRD9 (ENSMGAG00000001853)	TPPP (ENSMGAG00000001895)	ENSMGAG00000001943
Turkey	MODERN SPECIES	22											ENSMGAG00000001054	ENSMGAG00000022268	ENSMGAG00000001256	ENSMGAG00000020769 #22	ENSMGAG00000001202	ENSMGAG00000022584 #22	ENSMGAG00000001538	PDIA4 (ENSMGAG00000001335)	EZH2 (ENSMGAG00000001370)	CUL1 (ENSMGAG00000001436)	CNTNAP2 (ENSMGAG00000001546)	TPK1 (ENSMGAG00000001560)	ENSMGAG00000001792	ENSMGAG00000017931	SLC12A7 (ENSMGAG00000001576) #8	TRIP13 (ENSMGAG00000001806)	BRD9 (ENSMGAG00000001853)	TPPP (ENSMGAG00000001895)	ENSMGAG00000001943	ENSMGAG00000001949	ENSMGAG00000002050
Chicken	MODERN SPECIES	11	ENSGALG00010008097	ENSGALG00010008091	ENSGALG00010008018	RBFA (ENSGALG00010008052)	ADNP2 (ENSGALG00010008011)	RECK (ENSGALG00010007982)	TGFBR1 (ENSGALG00010007951)	ENSGALG00010007936	LRRC14B (ENSGALG00010007929)	SLC9A3 (ENSGALG00010007655)	TPPP (ENSGALG00010007624)	BRD9 (ENSGALG00010007580)	TRIP13 (ENSGALG00010007567)	SLC12A7 (ENSGALG00010007521) #8	NFX1 (ENSGALG00010007479)	ENSGALG00010007118 #22	HUS1 (ENSGALG00010006912)	ENSGALG00010008452	TNS3 (ENSGALG00010008448)	IGFBP3 (ENSGALG00010008429)	IGFBP1 (ENSGALG00010008417)	ADCY1 (ENSGALG00010008388)	RAMP3 (ENSGALG00010008362)	PDIA4 (ENSGALG00010008340)	EZH2 (ENSGALG00010008330)	CUL1 (ENSGALG00010008300)	ENSGALG00010008281	ENSGALG00010008269	CNTNAP2 (ENSGALG00010008264)	ENSGALG00010008256	ENSGALG00010008253
African ostrich	MODERN SPECIES	281												PLEKHG4B (ENSSCUG00000006312)	LRRC14B (ENSSCUG00000006316)	ENSSCUG00000006358 #8	NFX1 (ENSSCUG00000006429)	ICE1 (ENSSCUG00000006476) #22	MED10 (ENSSCUG00000006484) #23	UBE2QL1 (ENSSCUG00000006485) #24	NSUN2 (ENSSCUG00000006496) #25	SRD5A1 (ENSSCUG00000006504) #26	TENT4A (ENSSCUG00000006506) #27	ADCY2 (ENSSCUG00000000320) #28	CFAP90 (ENSSCUG00000000340) #29	FASTKD3 (ENSSCUG00000000343) #30	MTRR (ENSSCUG00000000347) #31	SEMA5A (ENSSCUG00000000357) #32	ATPSCKMT (ENSSCUG00000000370) #34	CCT5 (ENSSCUG00000000372) #35	ENSSCUG00000000381 #36	ENSSCUG00000000387 #36	MARCHF6 (ENSSCUG00000000393) #37
Anura	ANCESTRAL SPECIES	463																ENSGT00950000183199.b #22	ENSGT00940000157173	ENSGT00940000163607
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000018329	ENSLLEG00000018396	ADAMTS16 (ENSLLEG00000018466) #21	ENSLLEG00000019170	ENSLLEG00000019189	ENSLLEG00000019214	ENSLLEG00000019264	ENSLLEG00000019756	EXOC3 (ENSLLEG00000019995)	ANKS6 (ENSLLEG00000020112)	PDCD6 (ENSLLEG00000020241)	ENSLLEG00000020304	PIGM (ENSLLEG00000020327)	ENSLLEG00000020388	CRTAP (ENSLLEG00000020422)	ENSLLEG00000020580 #22	GALNT12 (ENSLLEG00000020928)	ENSLLEG00000021079	ENSLLEG00000021270	ENSLLEG00000021294	ENSLLEG00000021366	ENSLLEG00000021386	PDE1C (ENSLLEG00000021436)	ENSLLEG00000022109	ENSLLEG00000022145	ENSLLEG00000022207	ENSLLEG00000022233	ENSLLEG00000022338	ENSLLEG00000022352	ENSLLEG00000022370	ENSLLEG00000022398
Frog	MODERN SPECIES	6	ENSXETG00000043416	ENSXETG00000043092	MRPL36 (ENSXETG00000040435) #15	ndufs6 (ENSXETG00000008889) #16	irx4 (ENSXETG00000008892) #17	irx2 (ENSXETG00000012653) #18	ENSXETG00000047167	irx1 (ENSXETG00000006958) #20	ENSXETG00000043083	ENSXETG00000043926	ENSXETG00000046413	adamts16 (ENSXETG00000019022) #21	ENSXETG00000040484	ENSXETG00000046469	exoc3 (ENSXETG00000006195)	ice1 (ENSXETG00000037852) #22	galnt12 (ENSXETG00000027025)	galnt4 (ENSXETG00000006191)	anks6 (ENSXETG00000006189)	ENSXETG00000046001	pdcd6 (ENSXETG00000027021)	pigm (ENSXETG00000006188)	ahrr (ENSXETG00000006186)	znfx1.2 (ENSXETG00000003560)	ENSXETG00000025628	cmbl (ENSXETG00000025629) #36	marchf6 (ENSXETG00000003553) #37	ropn1l (ENSXETG00000003552)	ENSXETG00000042529	ankrd33b (ENSXETG00000038702)	dap (ENSXETG00000025633)
Coelacanth	MODERN SPECIES	948													ENSLACG00000003061	ENSLACG00000008777	ENSLACG00000008868	ENSLACG00000009652 #22	ENSLACG00000010569	ENSLACG00000010596	MED10 (ENSLACG00000011409) #23	ENSLACG00000012908	ENSLACG00000012985	ENSLACG00000013379
Actinopterygii	ANCESTRAL SPECIES	2	ENSGT00400000022168.a	ENSGT00940000170761	ENSGT00950000183094.b.b	ENSGT00510000049601	ENSGT00940000154807.b	ENSGT00940000154896 #9	ENSGT00940000158906 #10	ENSGT00390000018531 #11	ENSGT00530000063461.A #12	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00950000182942.a.a	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A
Neopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a #14	ENSGT00940000158596 #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #28	ENSGT00390000015121 #29	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00950000182942.a.a	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A
Osteoglossocephalai	ANCESTRAL SPECIES	44	ENSGT00940000155112.B.a	ENSGT00950000183108.a.c	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #28	ENSGT00390000015121 #29
Osteoglossiformes	ANCESTRAL SPECIES	165	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #28	ENSGT00390000015121 #29	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00940000155909.o.a.h
Asian bonytongue	MODERN SPECIES	9	MTSS1 (ENSSFOG00015004132)	ndufb9 (ENSSFOG00015027706)	TMEM65 (ENSSFOG00015033091)	mboat1 (ENSSFOG00015025225)	ENSSFOG00015004019	CDKAL1 (ENSSFOG00015004003)	ENSSFOG00015003934	nrsn1 (ENSSFOG00015024787)	ENSSFOG00015003896	slc6a3 (ENSSFOG00015003829) #13	LPCAT1 (ENSSFOG00015003762) #14	irx4a (ENSSFOG00015003670) #17	irx2a (ENSSFOG00015003644) #18	irx1a (ENSSFOG00015003629) #20	ADAMTS16 (ENSSFOG00015003545) #21	ENSSFOG00015003528 #22	ENSSFOG00015033114 #24	TENT4A (ENSSFOG00015028711) #27	ADCY2 (ENSSFOG00015003228) #28	DNAH5 (ENSSFOG00015002965)	trioa (ENSSFOG00015002766)	ENSSFOG00015002733	CCR8 (ENSSFOG00015002711)	glb1 (ENSSFOG00015002680)	CCR8 (ENSSFOG00015002617)	CCR8 (ENSSFOG00015002606)	ENSSFOG00015002604	cobl (ENSSFOG00015002577)	GRB10 (ENSSFOG00015002512)	ddc (ENSSFOG00015002454)	entpd3 (ENSSFOG00015002030)
P. kingsleyae	MODERN SPECIES	1	ndufb9 (ENSPKIG00000019952)	rnf139 (ENSPKIG00000019977)	TMEM65 (ENSPKIG00000020023)	mboat1 (ENSPKIG00000020096)	ENSPKIG00000020122	CDKAL1 (ENSPKIG00000020135)	sox4b (ENSPKIG00000020154)	nrsn1 (ENSPKIG00000020163)	DCDC2 (ENSPKIG00000020174)	slc6a3 (ENSPKIG00000020190) #13	LPCAT1 (ENSPKIG00000020226) #14	irx4a (ENSPKIG00000020245) #17	irx2a (ENSPKIG00000020276) #18	irx1a (ENSPKIG00000020325) #20	ADAMTS16 (ENSPKIG00000020385) #21	ice1 (ENSPKIG00000020458) #22	UBE2QL1 (ENSPKIG00000020483) #24	TENT4A (ENSPKIG00000020499) #27	ADCY2 (ENSPKIG00000020549) #28	DNAH5 (ENSPKIG00000020741)	trioa (ENSPKIG00000021187)	ENSPKIG00000021251	ENSPKIG00000021262	c1qtnf9 (ENSPKIG00000021279)	ENSPKIG00000021286	zgc:136493 (ENSPKIG00000021305)	rbfa (ENSPKIG00000021329)	ZFAT (ENSPKIG00000021355)	dync1i1 (ENSPKIG00000021394)	pon1 (ENSPKIG00000021420)	ENSPKIG00000021446
Clupeocephala	ANCESTRAL SPECIES	24	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000177739	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #28	ENSGT00390000015121 #29	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004
Otomorpha	ANCESTRAL SPECIES	153																ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Otophysi	ANCESTRAL SPECIES	58	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a
Channel catfish	MODERN SPECIES		ENSIPUG00000000617	ENSIPUG00000000620	ENSIPUG00000000623	CCR8 (ENSIPUG00000000625)	ENSIPUG00000000629	ENSIPUG00000000635	ENSIPUG00000000643	ENSIPUG00000000668	DNAH5 (ENSIPUG00000000709)	Adcy2 (ENSIPUG00000000788) #28	TENT4A (ENSIPUG00000000878) #27	PRPF3 (ENSIPUG00000000902)	ENSIPUG00000001009	ENSIPUG00000000997	ENSIPUG00000001016	ice1 (ENSIPUG00000001024) #22	ca14 (ENSIPUG00000001038)	taf2 (ENSIPUG00000001047)	ENPP2 (ENSIPUG00000001082)	ENSIPUG00000001113	Pdcd6 (ENSIPUG00000001129)	si:ch211-196f5.2 (ENSIPUG00000001166)	ipo4 (ENSIPUG00000001185)	nanog (ENSIPUG00000001246)	tm9sf1 (ENSIPUG00000001255)	fen1 (ENSIPUG00000001277)	esco1 (ENSIPUG00000001346)	ENSIPUG00000001361	tmem241 (ENSIPUG00000001378)	Riok3 (ENSIPUG00000001406)	ENSIPUG00000001477
Characiphysae_b	ANCESTRAL SPECIES	99	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a	ENSGT00940000159641
Characoidei	ANCESTRAL SPECIES	60	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000162635.ob	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.u	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a	ENSGT00940000159641
Red-bellied piranha	MODERN SPECIES	70	mboat1 (ENSPNAG00000001569)	TMEM65 (ENSPNAG00000011182)	MTSS1 (ENSPNAG00000011302)	scgn (ENSPNAG00000001675)	CARMIL1 (ENSPNAG00000011382)	ENSPNAG00000001714	TNFRSF11B (ENSPNAG00000011418)	si:ch211-93i7.4 (ENSPNAG00000011397)	mal2 (ENSPNAG00000011425)	CCN3 (ENSPNAG00000011433)	enpp2 (ENSPNAG00000001739)	taf2 (ENSPNAG00000001742)	ca14 (ENSPNAG00000001753)	ENSPNAG00000001758	prpf3 (ENSPNAG00000001799)	ice1 (ENSPNAG00000001809) #22	TENT4A (ENSPNAG00000011603) #27	ADCY2 (ENSPNAG00000001857) #28	DNAH5 (ENSPNAG00000001933)	ENSPNAG00000012018	ENSPNAG00000002082	CCR8 (ENSPNAG00000012062)	CCR8 (ENSPNAG00000002086)	ENSPNAG00000012073	cobl (ENSPNAG00000012144)	GRB10 (ENSPNAG00000002153)	ddc (ENSPNAG00000012267)	ENSPNAG00000012300	AGL (ENSPNAG00000012454)	ENSPNAG00000002266	rab11fip3 (ENSPNAG00000012528)
Mexicana tetra	MODERN SPECIES	2	ENSAMXG00000007229	ENSAMXG00000025195	ENSAMXG00000035390	scgn (ENSAMXG00000037361)	CARMIL1 (ENSAMXG00000007246)	ENSAMXG00000040250	TNFRSF11B (ENSAMXG00000035635)	si:ch211-93i7.4 (ENSAMXG00000033176)	mal2 (ENSAMXG00000040616)	CCN3 (ENSAMXG00000035188)	enpp2 (ENSAMXG00000007268)	taf2 (ENSAMXG00000007296)	ca14 (ENSAMXG00000036060)	ENSAMXG00000038153	prpf3 (ENSAMXG00000007306)	ice1 (ENSAMXG00000042159) #22	TENT4A (ENSAMXG00000039964) #27	ADCY2 (ENSAMXG00000038314) #28	ENSAMXG00000038886	DNAH5 (ENSAMXG00000007429)	ENSAMXG00000007530	ENSAMXG00000040867	ENSAMXG00000041813	ENSAMXG00000043119	CCR8 (ENSAMXG00000029794)	CX3CR1 (ENSAMXG00000032773)	cobl (ENSAMXG00000019415)	ENSAMXG00000036059	GRB10 (ENSAMXG00000019421)	ddc (ENSAMXG00000019455)	ENSAMXG00000019467
Electric eel	MODERN SPECIES	174	cog7 (ENSEEEG00000011451)	kcnc3b (ENSEEEG00000011456)	ENSEEEG00000011457	SBK1 (ENSEEEG00000011458)	ENSEEEG00000011459	ENSEEEG00000011461	NLRC3 (ENSEEEG00000011464)	cluap1 (ENSEEEG00000011471)	ENSEEEG00000011474	enpp2 (ENSEEEG00000011475)	ENSEEEG00000011477	taf2 (ENSEEEG00000011482)	ca14 (ENSEEEG00000011858)	ENSEEEG00000011859	prpf3 (ENSEEEG00000011861)	ENSEEEG00000011864 #22	TENT4A (ENSEEEG00000011867) #27	ADCY2 (ENSEEEG00000011871) #28	DNAH5 (ENSEEEG00000011873)	ENSEEEG00000011893
Cyprinoidei	ANCESTRAL SPECIES	86		ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000157006.m	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018878	ENSGT00940000157873.c	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00940000157537
Cyprininae	ANCESTRAL SPECIES	292											ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb	ENSGT00940000164936.a	ENSGT00390000018360.a	ENSGT00390000011497.b	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a.a.a #28	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c	ENSGT00940000157537.t
Goldfish	MODERN SPECIES	7	dcst2 (ENSCARG00000065614)	ENSCARG00000065604	ADAM15 (ENSCARG00000065535)	abcb4 (ENSCARG00000055458)	crot (ENSCARG00000054864)	acbd7 (ENSCARG00000054833)	rpp38 (ENSCARG00000054825)	nmt2 (ENSCARG00000054408)	FAM171A1 (ENSCARG00000054300)	ITGA8 (ENSCARG00000053400)	mindy3 (ENSCARG00000053338)	sox4b (ENSCARG00000053331)	ENSCARG00000053322	ENSCARG00000053315	ENSCARG00000053305	ice1 (ENSCARG00000053282) #22	ndufb9 (ENSCARG00000053250)	ENSCARG00000053243	ENSCARG00000053238	ENSCARG00000053235	ENSCARG00000053221	ENSCARG00000053217	CDKAL1 (ENSCARG00000052622)	sox4b (ENSCARG00000052578)	ENSCARG00000052559	nrsn1 (ENSCARG00000052546)	DCDC2 (ENSCARG00000052541)	slc6a3 (ENSCARG00000051383) #13	LPCAT1 (ENSCARG00000051265) #14	ENSCARG00000051253	irx4a (ENSCARG00000051226) #17
Cyprininae_a	ANCESTRAL SPECIES	184											ENSGT00390000000420	ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb	ENSGT00390000018360.a	ENSGT00390000011497.b	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a.a.a #28	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c	ENSGT00940000157537.t
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1063										taf2 (ENSSGRG00000016236)	ENSSGRG00000016227	ENSSGRG00000016226	ca14 (ENSSGRG00000016225)	ENSSGRG00000016222	prpf3 (ENSSGRG00000016192)	ice1 (ENSSGRG00000016190) #22	trmt44 (ENSSGRG00000016187)	rpl34 (ENSSGRG00000016185)
Golden-line barbel	MODERN SPECIES	1801															prpf3 (ENSSGRG00000016966)	ice1 (ENSSGRG00000016965) #22	TENT4A (ENSSGRG00000016963) #27
Common carp reference	MODERN SPECIES	47	DCDC2 (ENSCCRG00000074477)	nrsn1 (ENSCCRG00000063262)	ENSCCRG00000009226	ENSCCRG00000055302	sox4b (ENSCCRG00000064749)	CDKAL1 (ENSCCRG00000078434)	ENSCCRG00000070793	ENSCCRG00000032799	ENSCCRG00000059401	ENSCCRG00000021581	ENSCCRG00000065962	ENSCCRG00000000786	ca14 (ENSCCRG00000073224)	prpf3 (ENSCCRG00000028229)	ENSCCRG00000054903	ENSCCRG00000004176 #22	ENSCCRG00000060732	ENSCCRG00000027486 #28	ENSCCRG00000058089	ENSCCRG00000037038	ENSCCRG00000018516	ENSCCRG00000028569	cobl (ENSCCRG00000022649)	ENSCCRG00000077123	ddc (ENSCCRG00000022014)	entpd3 (ENSCCRG00000018339)	GASK1A (ENSCCRG00000082810)	pomgnt2 (ENSCCRG00000078667)	ano10a (ENSCCRG00000069517)	ABHD5 (ENSCCRG00000051222)	snrka (ENSCCRG00000073103)
Zebrafish	MODERN SPECIES	7	ano10a (ENSDARG00000057736)	snrka (ENSDARG00000070832)	pomgnt2 (ENSDARG00000010941)	GASK1A (ENSDARG00000076862)	entpd3 (ENSDARG00000035309)	ddc (ENSDARG00000016494)	GRB10 (ENSDARG00000035308)	cobl (ENSDARG00000091006)	ENSDARG00000079829	ENSDARG00000105363	ENSDARG00000105467	CCR8 (ENSDARG00000086616)	ENSDARG00000000370	DNAH5 (ENSDARG00000087373)	ADCY2 (ENSDARG00000058392) #28	ice1 (ENSDARG00000058461) #22	ENSDARG00000095789	prpf3 (ENSDARG00000086425)	ENSDARG00000078162	ca14 (ENSDARG00000061697)	taf2 (ENSDARG00000102307)	enpp2 (ENSDARG00000011257)	mal2 (ENSDARG00000077637)	COLEC10 (ENSDARG00000104752)	ENSDARG00000105239	pip5k1ab (ENSDARG00000024642)	psmd4b (ENSDARG00000023279)	vamp1b (ENSDARG00000097576)	ENSDARG00000058351	grhl2a (ENSDARG00000058342)	ncalda (ENSDARG00000070688)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Denticle herring	MODERN SPECIES	15	smc5 (ENSDCDG00000027386)	tjp2a (ENSDCDG00000027413)	pip5k1ba (ENSDCDG00000027588)	NIPBL (ENSDCDG00000027806)	skp2 (ENSDCDG00000028247)	nadk2 (ENSDCDG00000028249)	idh3b (ENSDCDG00000028276)	slc1a3b (ENSDCDG00000028721)	DMD (ENSDCDG00000028820)	gnrh2 (ENSDCDG00000029490)	ptpra (ENSDCDG00000029648)	pcnp (ENSDCDG00000032649)	mxa (ENSDCDG00000032679)	efnb2b (ENSDCDG00000033116)	arglu1b (ENSDCDG00000033120)	ENSDCDG00000033123 #22	ENSDCDG00000033125 #20	irx2a (ENSDCDG00000033126) #18	irx4a (ENSDCDG00000033130) #17	LPCAT1 (ENSDCDG00000033145) #14	slc6a3 (ENSDCDG00000000384) #13	DCDC2 (ENSDCDG00000000532)	nrsn1 (ENSDCDG00000000539)	sox4b (ENSDCDG00000000547)	CDKAL1 (ENSDCDG00000000592)	ENSDCDG00000000676	ENSDCDG00000000680	mboat1 (ENSDCDG00000000702)	TMEM14C (ENSDCDG00000000765)	DNAH5 (ENSDCDG00000000794)	hacl1 (ENSDCDG00000000855)
Atlantic herring	MODERN SPECIES	2	atg12 (ENSCHAG00000017434)	ENSCHAG00000017426	rcvrn2 (ENSCHAG00000017412)	rxrbb (ENSCHAG00000017392)	FHOD3 (ENSCHAG00000017110)	slc6a19b (ENSCHAG00000016766) #9	ENSCHAG00000016702 #10	ENSCHAG00000016505	CFAP418 (ENSCHAG00000016493)	ENSCHAG00000016475	pimr50 (ENSCHAG00000016456)	plekhf2 (ENSCHAG00000016451)	NDUFAF6 (ENSCHAG00000016235)	nagpa (ENSCHAG00000016220)	pycr3 (ENSCHAG00000016190)	ENSCHAG00000016139 #22	ADCY2 (ENSCHAG00000015587) #28	DNAH5 (ENSCHAG00000013376)	ENSCHAG00000011435	ENSCHAG00000011361	CCR8 (ENSCHAG00000011352)	ENSCHAG00000011344	ENSCHAG00000011328	ENSCHAG00000011308	ENSCHAG00000011277	cobl (ENSCHAG00000011205)	ADAMTS16 (ENSCHAG00000011060) #21	irx1a (ENSCHAG00000011027) #20	irx2a (ENSCHAG00000011016) #18	irx4a (ENSCHAG00000011003) #17	LPCAT1 (ENSCHAG00000010974) #14
Euteleosteomorpha	ANCESTRAL SPECIES	77	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Acanthomorphata	ANCESTRAL SPECIES	124	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00390000015121 #29	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b
Euacanthomorphacea	ANCESTRAL SPECIES	71	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae	ANCESTRAL SPECIES		ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT01030000234574.A.a.f #14	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Tetraodon	MODERN SPECIES	23	ENSTNIG00000009625	MTSS1 (ENSTNIG00000009624)	TMEM65 (ENSTNIG00000009623)	mboat1 (ENSTNIG00000009622)	E2F3 (ENSTNIG00000009621)	CDKAL1 (ENSTNIG00000009620)	sox4b (ENSTNIG00000009619)	nrsn1 (ENSTNIG00000007216)	DCDC2 (ENSTNIG00000007217)	slc6a3 (ENSTNIG00000007218) #13	LPCAT1 (ENSTNIG00000007219) #14	ENSTNIG00000001193	irx4a (ENSTNIG00000007220) #17	irx2a (ENSTNIG00000007221) #18	ADAMTS16 (ENSTNIG00000003742) #21	ENSTNIG00000000537 #22	ENSTNIG00000003741 #27	ADCY2 (ENSTNIG00000004420) #28	ENSTNIG00000004421	ENSTNIG00000019063	ENSTNIG00000019124	CCR8 (ENSTNIG00000019123)	ENSTNIG00000019122	ENSTNIG00000001750	cobl (ENSTNIG00000019121)	ENSTNIG00000019120	entpd3 (ENSTNIG00000019119)	rbms3 (ENSTNIG00000013819)	azi2 (ENSTNIG00000019118)	cmc1 (ENSTNIG00000019117)	eomesb (ENSTNIG00000019116)
Fugu	MODERN SPECIES	19	MTSS1 (ENSTRUG00000009080)	TMEM65 (ENSTRUG00000022028)	mboat1 (ENSTRUG00000008619)	E2F3 (ENSTRUG00000025067)	CDKAL1 (ENSTRUG00000008317)	sox4b (ENSTRUG00000008283)	nrsn1 (ENSTRUG00000008167)	DCDC2 (ENSTRUG00000020536)	LPCAT1 (ENSTRUG00000007993) #14	irx4a (ENSTRUG00000007775) #17	irx2a (ENSTRUG00000007607) #18	irx1a (ENSTRUG00000007467) #20	ENSTRUG00000030730	ADAMTS16 (ENSTRUG00000006843) #21	ENSTRUG00000032277	ENSTRUG00000006735 #22	TENT4A (ENSTRUG00000006698) #27	ADCY2 (ENSTRUG00000004979) #28	DNAH5 (ENSTRUG00000003584)	CCR8 (ENSTRUG00000010083)	ENSTRUG00000010075	ENSTRUG00000032932	cobl (ENSTRUG00000009979)	ENSTRUG00000009828	ddc (ENSTRUG00000009415)	entpd3 (ENSTRUG00000009318)	rbms3 (ENSTRUG00000021719)	azi2 (ENSTRUG00000026808)	cmc1 (ENSTRUG00000009107)	eomesb (ENSTRUG00000008966)	ANKIB1 (ENSTRUG00000008837)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Ballan wrasse	MODERN SPECIES	69	mal2 (ENSLBEG00000022749)	MTSS1 (ENSLBEG00000022637)	TMEM65 (ENSLBEG00000022553)	mboat1 (ENSLBEG00000022521)	ENSLBEG00000022497	CDKAL1 (ENSLBEG00000022455)	sox4b (ENSLBEG00000022430)	ENSLBEG00000022163	nrsn1 (ENSLBEG00000022002)	slc6a3 (ENSLBEG00000021954) #13	LPCAT1 (ENSLBEG00000021887) #14	irx4a (ENSLBEG00000021844) #17	irx2a (ENSLBEG00000021820) #18	irx1a (ENSLBEG00000021794) #20	ADAMTS16 (ENSLBEG00000021681) #21	ENSLBEG00000021621 #22	TENT4A (ENSLBEG00000021596) #27	ADCY2 (ENSLBEG00000021518) #28	DNAH5 (ENSLBEG00000021135)	ENSLBEG00000021026
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.l.b	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A.f	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.l.b	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A.f	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
European seabass	MODERN SPECIES	6	E2F3 (ENSDLAG00005028801)	CDKAL1 (ENSDLAG00005013192)	sox4b (ENSDLAG00005028717)	ENSDLAG00005013418	ENSDLAG00005013434	nrsn1 (ENSDLAG00005032271)	DCDC2 (ENSDLAG00005026563)	slc6a3 (ENSDLAG00005013489) #13	ENSDLAG00005014159 #14	irx4a (ENSDLAG00005014202) #17	irx2a (ENSDLAG00005027283) #18	irx1a (ENSDLAG00005014217) #20	ENSDLAG00005034153	ENSDLAG00005029488	ADAMTS16 (ENSDLAG00005014230) #21	ENSDLAG00005014513 #22	ENSDLAG00005014528 #27	ENSDLAG00005014639 #28	ENSDLAG00005015456	ENSDLAG00005016176	ENSDLAG00005019868	ENSDLAG00005031638	ENSDLAG00005033027	ENSDLAG00005024611	cobl (ENSDLAG00005019888)	ENSDLAG00005019972	ddc (ENSDLAG00005020771)	entpd3 (ENSDLAG00005020794)	RBMS3 (ENSDLAG00005020807)	azi2 (ENSDLAG00005020872)	ENSDLAG00005030140
Large yellow croaker	MODERN SPECIES	484	mal2 (ENSLCRG00005017206)	MTSS1 (ENSLCRG00005017258)	TMEM65 (ENSLCRG00005017317)	mboat1 (ENSLCRG00005017319)	e2f3 (ENSLCRG00005017336)	CDKAL1 (ENSLCRG00005017341)	sox4b (ENSLCRG00005017359)	nrsn1 (ENSLCRG00005017362)	DCDC2 (ENSLCRG00005017367)	slc6a3 (ENSLCRG00005017387) #13	LPCAT1 (ENSLCRG00005017854) #14	irx4a (ENSLCRG00005017874) #17	irx2a (ENSLCRG00005017881) #18	irx1a (ENSLCRG00005017890) #20	ADAMTS16 (ENSLCRG00005017931) #21	ENSLCRG00005018119 #22	TENT4A (ENSLCRG00005018122) #27	ADCY2 (ENSLCRG00005018148) #28	DNAH5 (ENSLCRG00005018334)	ENSLCRG00005018467	CCR8 (ENSLCRG00005018580)	CCR8 (ENSLCRG00005018582)	ENSLCRG00005018584	cobl (ENSLCRG00005018600)	ENSLCRG00005018618	ddc (ENSLCRG00005018653)	entpd3 (ENSLCRG00005018721)	rbms3 (ENSLCRG00005018759)	azi2 (ENSLCRG00005019121)	cmc1 (ENSLCRG00005019130)	eomesb (ENSLCRG00005019138)
Gilthead seabream	MODERN SPECIES	8	E2F3 (ENSSAUG00010022002)	ENSSAUG00010022001	CDKAL1 (ENSSAUG00010022000)	sox4b (ENSSAUG00010021998)	ENSSAUG00010021996	ENSSAUG00010021993	nrsn1 (ENSSAUG00010021988)	DCDC2 (ENSSAUG00010021987)	ENSSAUG00010021985	slc6a3 (ENSSAUG00010021894) #13	LPCAT1 (ENSSAUG00010021683) #14	irx4a (ENSSAUG00010021674) #17	irx2a (ENSSAUG00010021671) #18	irx1a (ENSSAUG00010021667) #20	ADAMTS16 (ENSSAUG00010021654) #21	ENSSAUG00010021644 #22	TENT4A (ENSSAUG00010021639) #27	ADCY2 (ENSSAUG00010021610) #28	DNAH5 (ENSSAUG00010021567)	ENSSAUG00010021300	CCR8 (ENSSAUG00010021298)	CCR8 (ENSSAUG00010021297)	ENSSAUG00010021295	cobl (ENSSAUG00010021291)	GRB10 (ENSSAUG00010020325)	ENSSAUG00010020297	ddc (ENSSAUG00010020250)	ENSSAUG00010020249	entpd3 (ENSSAUG00010020245)	rbms3 (ENSSAUG00010020213)	azi2 (ENSSAUG00010020210)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Lumpfish	MODERN SPECIES	7	TMEM65 (ENSCLMG00005006240)	mboat1 (ENSCLMG00005006235)	ENSCLMG00005006230	ENSCLMG00005006229	CDKAL1 (ENSCLMG00005004820)	sox4b (ENSCLMG00005004791)	nrsn1 (ENSCLMG00005004787)	DCDC2 (ENSCLMG00005004675)	ENSCLMG00005004650	slc6a3 (ENSCLMG00005004616) #13	ENSCLMG00005004593 #14	irx4a (ENSCLMG00005004426) #17	irx2a (ENSCLMG00005004346) #18	irx1a (ENSCLMG00005010621) #20	ADAMTS16 (ENSCLMG00005010617) #21	ENSCLMG00005010611 #22	TENT4A (ENSCLMG00005010606) #27	ADCY2 (ENSCLMG00005010602) #28	DNAH5 (ENSCLMG00005010582)	ENSCLMG00005009872	CCR8 (ENSCLMG00005009860)	cobl (ENSCLMG00005009857)	GRB10 (ENSCLMG00005009342)	ddc (ENSCLMG00005009335)	ddc (ENSCLMG00005009331)	ddc (ENSCLMG00005009330)	ddc (ENSCLMG00005006173)	ENSCLMG00005006164	entpd3 (ENSCLMG00005006162)	rbms3 (ENSCLMG00005006160)	azi2 (ENSCLMG00005006159)
Stickleback	MODERN SPECIES	19	si:ch211-93i7.4 (ENSGACG00000006686)	ENSGACG00000006682	mal2 (ENSGACG00000006665)	MTSS1 (ENSGACG00000006650)	TMEM65 (ENSGACG00000006642)	E2F3 (ENSGACG00000006632)	CDKAL1 (ENSGACG00000006622)	sox4b (ENSGACG00000006620)	slc6a3 (ENSGACG00000006614) #13	LPCAT1 (ENSGACG00000006610) #14	irx4a (ENSGACG00000006607) #17	nrsn1 (ENSGACG00000006587)	irx2a (ENSGACG00000006581) #18	irx1a (ENSGACG00000006572) #20	ADAMTS16 (ENSGACG00000006552) #21	ENSGACG00000006535 #22	TENT4A (ENSGACG00000006531) #27	ADCY2 (ENSGACG00000006520) #28	DNAH5 (ENSGACG00000006485)	ENSGACG00000006462	CCR8 (ENSGACG00000006459)	CCR8 (ENSGACG00000006457)	ENSGACG00000006455	cobl (ENSGACG00000006446)	ENSGACG00000006438	ddc (ENSGACG00000006397)	entpd3 (ENSGACG00000006387)	rbms3 (ENSGACG00000006377)	azi2 (ENSGACG00000006371)	cmc1 (ENSGACG00000006355)	eomesb (ENSGACG00000006345)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Channel bull blenny	MODERN SPECIES	7	mal2 (ENSCGOG00000017357)	MTSS1 (ENSCGOG00000017359)	TMEM65 (ENSCGOG00000017715)	mboat1 (ENSCGOG00000017719)	E2F3 (ENSCGOG00000017795)	CDKAL1 (ENSCGOG00000017807)	sox4b (ENSCGOG00000018189)	ENSCGOG00000018191	nrsn1 (ENSCGOG00000018198)	slc6a3 (ENSCGOG00000018213) #13	LPCAT1 (ENSCGOG00000018622) #14	irx4a (ENSCGOG00000018626) #17	irx2a (ENSCGOG00000018629) #18	irx1a (ENSCGOG00000018630) #20	ADAMTS16 (ENSCGOG00000018633) #21	ENSCGOG00000018638 #22	ENSCGOG00000018639 #27	ADCY2 (ENSCGOG00000018652) #28	DNAH5 (ENSCGOG00000019126)	ENSCGOG00000019345	CCR8 (ENSCGOG00000019392)	ENSCGOG00000019394	ENSCGOG00000019397	ENSCGOG00000019400	ENSCGOG00000019403	ENSCGOG00000019411	ddc (ENSCGOG00000019524)	entpd3 (ENSCGOG00000019643)	rbms3 (ENSCGOG00000019662)	azi2 (ENSCGOG00000020909)	cmc1 (ENSCGOG00000020914)
Pike perch	MODERN SPECIES	15	ENSSLUG00000005414	ENSSLUG00000005411	ENSSLUG00000005398	ENSSLUG00000005310	ENSSLUG00000005276	nrsn1 (ENSSLUG00000005268)	DCDC2 (ENSSLUG00000005251)	slc6a3 (ENSSLUG00000005214) #13	ENSSLUG00000005204 #14	ENSSLUG00000005197	ENSSLUG00000005191	irx4a (ENSSLUG00000005163) #17	irx2a (ENSSLUG00000005099) #18	irx1a (ENSSLUG00000005071) #20	ADAMTS16 (ENSSLUG00000005044) #21	ENSSLUG00000005027 #22	TENT4A (ENSSLUG00000004991) #27	ADCY2 (ENSSLUG00000004890) #28	DNAH5 (ENSSLUG00000004788)	ENSSLUG00000001747	CCR8 (ENSSLUG00000001356)	CCR8 (ENSSLUG00000001353)
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Siamese fighting fish	MODERN SPECIES	7	MTSS1 (ENSBSLG00000016789)	ENSBSLG00000017334	mboat1 (ENSBSLG00000017351)	E2F3 (ENSBSLG00000017543)	CDKAL1 (ENSBSLG00000017574)	sox4b (ENSBSLG00000017876)	ENSBSLG00000017888	nrsn1 (ENSBSLG00000017902)	ENSBSLG00000017917	slc6a3 (ENSBSLG00000017958) #13	LPCAT1 (ENSBSLG00000018557) #14	irx4a (ENSBSLG00000018764) #17	irx2a (ENSBSLG00000018817) #18	irx1a (ENSBSLG00000018830) #20	ADAMTS16 (ENSBSLG00000018867) #21	ENSBSLG00000019271 #22	TENT4A (ENSBSLG00000019278) #27	ADCY2 (ENSBSLG00000019448) #28	DNAH5 (ENSBSLG00000019890)	ENSBSLG00000020981	ENSBSLG00000021015	ENSBSLG00000021062	ENSBSLG00000021087	cobl (ENSBSLG00000021140)	GRB10 (ENSBSLG00000021356)	ddc (ENSBSLG00000022416)	entpd3 (ENSBSLG00000022804)	rbms3 (ENSBSLG00000022849)	azi2 (ENSBSLG00000022908)	cmc1 (ENSBSLG00000022927)	eomesb (ENSBSLG00000022981)
Climbing perch	MODERN SPECIES	7	ENSATEG00000024074	MBOAT1 (ENSATEG00000024078)	E2F3 (ENSATEG00000024083)	CDKAL1 (ENSATEG00000024092)	sox4b (ENSATEG00000024103)	ENSATEG00000024120	ENSATEG00000024141	nrsn1 (ENSATEG00000024148)	DCDC2 (ENSATEG00000028429)	slc6a3 (ENSATEG00000024157) #13	ENSATEG00000024162 #14	irx4a (ENSATEG00000024168) #17	irx2a (ENSATEG00000024174) #18	irx1a (ENSATEG00000024177) #20	ADAMTS16 (ENSATEG00000024185) #21	ENSATEG00000024192 #22	ENSATEG00000024197 #27	ENSATEG00000024202 #28	ENSATEG00000024212	ENSATEG00000024239	ENSATEG00000025734	ENSATEG00000026108	ENSATEG00000024255	ENSATEG00000024258	ENSATEG00000024261	ENSATEG00000030154	cobl (ENSATEG00000024278)	ENSATEG00000024287	ddc (ENSATEG00000024290)	entpd3 (ENSATEG00000024293)	RBMS3 (ENSATEG00000024295)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Seriola	ANCESTRAL SPECIES	16	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Greater amberjack	MODERN SPECIES	75	MTSS1 (ENSSDUG00000015414)	TMEM65 (ENSSDUG00000015376)	mboat1 (ENSSDUG00000015361)	E2F3 (ENSSDUG00000015325)	ENSSDUG00000015311	CDKAL1 (ENSSDUG00000015207)	sox4b (ENSSDUG00000015143)	ENSSDUG00000015132	nrsn1 (ENSSDUG00000015122)	slc6a3 (ENSSDUG00000015097) #13	LPCAT1 (ENSSDUG00000015038) #14	irx4a (ENSSDUG00000015004) #17	irx2a (ENSSDUG00000014985) #18	irx1a (ENSSDUG00000014947) #20	ADAMTS16 (ENSSDUG00000014889) #21	ENSSDUG00000014846 #22	ENSSDUG00000014825 #27	ADCY2 (ENSSDUG00000014787) #28	DNAH5 (ENSSDUG00000014206)	ENSSDUG00000013907	CCR8 (ENSSDUG00000013883)	CCR8 (ENSSDUG00000013878)	ENSSDUG00000013869	cobl (ENSSDUG00000013828)	ENSSDUG00000013788	ddc (ENSSDUG00000013766)	entpd3 (ENSSDUG00000013701)	rbms3 (ENSSDUG00000013656)	azi2 (ENSSDUG00000013637)	cmc1 (ENSSDUG00000013626)	eomesb (ENSSDUG00000013615)
Yellowtail amberjack	MODERN SPECIES	3198						CDKAL1 (ENSSLDG00000020382)	sox4b (ENSSLDG00000020371)	nrsn1 (ENSSLDG00000020352)	ENSSLDG00000020335	slc6a3 (ENSSLDG00000020009) #13	LPCAT1 (ENSSLDG00000019924) #14	irx4a (ENSSLDG00000019887) #17	irx2a (ENSSLDG00000019856) #18	irx1a (ENSSLDG00000019846) #20	ADAMTS16 (ENSSLDG00000019799) #21	ENSSLDG00000019767 #22	ENSSLDG00000019746 #27
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Turbot	MODERN SPECIES		MAL2 (ENSSMAG00000032230)	ENSSMAG00000003409	ENSSMAG00000003513	MBOAT1 (ENSSMAG00000003534)	E2F3 (ENSSMAG00000003546)	CDKAL1 (ENSSMAG00000003573)	sox4b (ENSSMAG00000003637)	nrsn1 (ENSSMAG00000003641)	DCDC2 (ENSSMAG00000003653)	slc6a3 (ENSSMAG00000003672) #13	ENSSMAG00000003739 #14	irx4a (ENSSMAG00000003773) #17	irx2a (ENSSMAG00000022904) #18	irx1a (ENSSMAG00000003852) #20	ADAMTS16 (ENSSMAG00000003857) #21	ENSSMAG00000003922 #22	ENSSMAG00000003989 #27	ENSSMAG00000004024 #28	ENSSMAG00000004127	ENSSMAG00000004603	ENSSMAG00000025062	ENSSMAG00000004706	ENSSMAG00000004713	cobl (ENSSMAG00000004725)	ENSSMAG00000004849	ddc (ENSSMAG00000022350)	entpd3 (ENSSMAG00000004976)	RBMS3 (ENSSMAG00000004997)	azi2 (ENSSMAG00000005187)	ENSSMAG00000022104	eomesb (ENSSMAG00000005213)
Tongue sole	MODERN SPECIES	4	ENSCSEG00000004117	ENSCSEG00000004057	ENSCSEG00000004047	mios (ENSCSEG00000004036)	ENSCSEG00000004029	ENSCSEG00000004026	sox4b (ENSCSEG00000004025)	nrsn1 (ENSCSEG00000004021)	DCDC2 (ENSCSEG00000004017)	slc6a3 (ENSCSEG00000004002) #13	LPCAT1 (ENSCSEG00000003975) #14	irx4a (ENSCSEG00000003963) #17	irx2a (ENSCSEG00000003955) #18	irx1a (ENSCSEG00000003947) #20	ADAMTS16 (ENSCSEG00000003913) #21	ENSCSEG00000003893 #22	ENSCSEG00000003887 #27	ADCY2 (ENSCSEG00000003855) #28	mal2 (ENSCSEG00000003844)	ENSCSEG00000003841	TNFRSF11B (ENSCSEG00000003835)	ENSCSEG00000003830	CARMIL1 (ENSCSEG00000003813)	scgn (ENSCSEG00000003802)	CCN3 (ENSCSEG00000003798)	ENSCSEG00000003793	ctnnb1 (ENSCSEG00000003769)	ENSCSEG00000003765	TRAK1 (ENSCSEG00000003758)	ccka (ENSCSEG00000003756)	ENSCSEG00000003744
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT01030000234574.A.a.f #14	ENSGT00940000177739	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT01030000234574.A.a.f #14	ENSGT00940000177739	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Pomacentridae	ANCESTRAL SPECIES	23	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT01030000234574.A.a.f #14	ENSGT00940000177739	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Amphiprion	ANCESTRAL SPECIES	54	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Clown anemonefish	MODERN SPECIES	1360															ADAMTS16 (ENSAOCG00000000852) #21	ENSAOCG00000013520 #22	TENT4A (ENSAOCG00000013501) #27	ADCY2 (ENSAOCG00000013485) #28	DNAH5 (ENSAOCG00000013443)	ENSAOCG00000013177	CCR8 (ENSAOCG00000013010)	ENSAOCG00000013002	ENSAOCG00000012993	cobl (ENSAOCG00000002209)	GRB10 (ENSAOCG00000012855)	ddc (ENSAOCG00000002147)
Orange clownfish	MODERN SPECIES	21	MTSS1 (ENSAPEG00000014560)	TMEM65 (ENSAPEG00000014616)	mboat1 (ENSAPEG00000014677)	E2F3 (ENSAPEG00000014727)	CDKAL1 (ENSAPEG00000014801)	sox4b (ENSAPEG00000014937)	ENSAPEG00000014975	nrsn1 (ENSAPEG00000015059)	DCDC2 (ENSAPEG00000015093)	slc6a3 (ENSAPEG00000015126) #13	LPCAT1 (ENSAPEG00000015191) #14	irx4a (ENSAPEG00000015290) #17	irx2a (ENSAPEG00000015314) #18	irx1a (ENSAPEG00000015338) #20	ADAMTS16 (ENSAPEG00000015350) #21	ENSAPEG00000015492 #22	TENT4A (ENSAPEG00000015522) #27	ENSAPEG00000015540 #28	DNAH5 (ENSAPEG00000015612)	ENSAPEG00000015798	CCR8 (ENSAPEG00000016031)	ENSAPEG00000016039	ENSAPEG00000016049	cobl (ENSAPEG00000016068)	GRB10 (ENSAPEG00000016152)	ddc (ENSAPEG00000016234)	entpd3 (ENSAPEG00000016291)	rbms3 (ENSAPEG00000016299)	azi2 (ENSAPEG00000016346)	cmc1 (ENSAPEG00000016367)	eomesb (ENSAPEG00000016400)
Spiny chromis	MODERN SPECIES	308																ENSAPOG00000018115 #22	TENT4A (ENSAPOG00000018106) #27	ADCY2 (ENSAPOG00000018092) #28	fads2 (ENSAPOG00000017946)	LRRC10B (ENSAPOG00000017866)	ENSAPOG00000017852	SYT7 (ENSAPOG00000017822)	ENSAPOG00000017771	ENSAPOG00000017704	PNPLA2 (ENSAPOG00000017699)	ENSAPOG00000017659	pgghg (ENSAPOG00000017622)	ENSAPOG00000017598	fth1b (ENSAPOG00000017534)	BEST1 (ENSAPOG00000017526)	RAB3IL1 (ENSAPOG00000017469)
Bicolor damselfish	MODERN SPECIES	1232															ADAMTS16 (ENSSPAG00000017452) #21	ENSSPAG00000017429 #22	TENT4A (ENSSPAG00000017401) #27	ADCY2 (ENSSPAG00000017329) #28
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.a	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.b	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a
Burton s mouthbrooder	MODERN SPECIES	465								nrsn1 (ENSHBUG00000005109)	ENSHBUG00000005117	slc6a3 (ENSHBUG00000005189) #13	LPCAT1 (ENSHBUG00000005255) #14	irx4a (ENSHBUG00000005281) #17	irx2a (ENSHBUG00000000945) #18	irx1a (ENSHBUG00000005321) #20	ADAMTS16 (ENSHBUG00000005402) #21	ENSHBUG00000005427 #22	ENSHBUG00000001038 #27	ADCY2 (ENSHBUG00000005498) #28	DNAH5 (ENSHBUG00000005677)	ENSHBUG00000005837	CCR8 (ENSHBUG00000005857)	ENSHBUG00000005868
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.b	ENSGT01020000230359.A.e.a.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a
Haplochromini_B	ANCESTRAL SPECIES	50	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.e	ENSGT01060000248575.D.c.b.a.b.a.f.a.b	ENSGT01060000248575.D.c.b.a.b.a.f.a.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000178259.a
Zebra mbuna	MODERN SPECIES	1093	sox4b (ENSMZEG00005025621)	ENSMZEG00005025628	ENSMZEG00005025705	ENSMZEG00005000064	ENSMZEG00005000103	ENSMZEG00005000172	ENSMZEG00005001482	nrsn1 (ENSMZEG00005001555)	DCDC2 (ENSMZEG00005001579)	slc6a3 (ENSMZEG00005001594) #13	LPCAT1 (ENSMZEG00005001635) #14	irx4a (ENSMZEG00005001663) #17	irx2a (ENSMZEG00005001683) #18	irx1a (ENSMZEG00005001700) #20	ADAMTS16 (ENSMZEG00005001714) #21	ENSMZEG00005001791 #22	ENSMZEG00005001805 #27	ADCY2 (ENSMZEG00005001837) #28	ENSMZEG00005001884	ENSMZEG00005001894	ENSMZEG00005001909	ENSMZEG00005001925	ENSMZEG00005001934	trmt11 (ENSMZEG00005001961)	hint3 (ENSMZEG00005002001)	ENSMZEG00005002011	ENSMZEG00005002128	ENSMZEG00005002215	ENSMZEG00005002247	ENSMZEG00005002265	ctnnb1 (ENSMZEG00005002279)
Eastern happy	MODERN SPECIES	2	ENSACLG00000014932	ENSACLG00000015148	ENSACLG00000015940	ENSACLG00000016003	ENSACLG00000016234	ENSACLG00000016261	nrsn1 (ENSACLG00000016280)	DCDC2 (ENSACLG00000016296)	slc6a3 (ENSACLG00000016313) #13	LPCAT1 (ENSACLG00000016419) #14	irx4a (ENSACLG00000016472) #17	ENSACLG00000016515	irx2a (ENSACLG00000016529) #18	irx1a (ENSACLG00000016599) #20	ADAMTS16 (ENSACLG00000016662) #21	ENSACLG00000016786 #22	ENSACLG00000016812 #27	ADCY2 (ENSACLG00000016838) #28	DNAH5 (ENSACLG00000017018)	ENSACLG00000017507	ENSACLG00000017508	ENSACLG00000017522	ENSACLG00000017530	ENSACLG00000017546	ENSACLG00000017737	ENSACLG00000017953	ENSACLG00000017967	ENSACLG00000017980	ENSACLG00000017989	ENSACLG00000017997	ENSACLG00000018007
P. nyererei	MODERN SPECIES	441	mal2 (ENSPNYG00000008827)	MTSS1 (ENSPNYG00000008734)	TMEM65 (ENSPNYG00000008687)	mboat1 (ENSPNYG00000008612)	E2F3 (ENSPNYG00000008585)	CDKAL1 (ENSPNYG00000008533)	sox4b (ENSPNYG00000008483)	ENSPNYG00000008473	nrsn1 (ENSPNYG00000008454)	slc6a3 (ENSPNYG00000008419) #13	LPCAT1 (ENSPNYG00000008381) #14	irx4a (ENSPNYG00000008347) #17	irx2a (ENSPNYG00000008324) #18	irx1a (ENSPNYG00000008294) #20	ADAMTS16 (ENSPNYG00000008224) #21	ENSPNYG00000008193 #22	ENSPNYG00000008164 #27	ADCY2 (ENSPNYG00000008105) #28	ENSPNYG00000008086
Lyretail cichlid	MODERN SPECIES	411							sox4b (ENSNBRG00000009576)	nrsn1 (ENSNBRG00000009557)	DCDC2 (ENSNBRG00000009546)	slc6a3 (ENSNBRG00000009507) #13	LPCAT1 (ENSNBRG00000009465) #14	irx4a (ENSNBRG00000009447) #17	irx2a (ENSNBRG00000009422) #18	irx1a (ENSNBRG00000009359) #20	ADAMTS16 (ENSNBRG00000009277) #21	ENSNBRG00000009248 #22	ENSNBRG00000009218 #27	ADCY2 (ENSNBRG00000009156) #28	ENSNBRG00000009139	DNAH5 (ENSNBRG00000009027)	ENSNBRG00000008924	ENSNBRG00000008858	ENSNBRG00000008707	CCR8 (ENSNBRG00000008639)	ENSNBRG00000008619	ENSNBRG00000008590	ENSNBRG00000008574	ENSNBRG00000008550	CX3CR1 (ENSNBRG00000008528)	ENSNBRG00000008521	ENSNBRG00000008507
Nile tilapia	MODERN SPECIES	2	ENSONIG00000038591	E2F3 (ENSONIG00000007069)	CDKAL1 (ENSONIG00000007075)	ENSONIG00000034194	sox4b (ENSONIG00000020748)	ENSONIG00000027348	ENSONIG00000007077	nrsn1 (ENSONIG00000007078)	DCDC2 (ENSONIG00000031993)	slc6a3 (ENSONIG00000007082) #13	LPCAT1 (ENSONIG00000007105) #14	irx4a (ENSONIG00000036951) #17	irx2a (ENSONIG00000038017) #18	irx1a (ENSONIG00000007113) #20	ADAMTS16 (ENSONIG00000007117) #21	ENSONIG00000007128 #22	ENSONIG00000007130 #27	ADCY2 (ENSONIG00000007131) #28	ENSONIG00000037862	ENSONIG00000032288	DNAH5 (ENSONIG00000007143)	ENSONIG00000029926	ENSONIG00000007147	CCR8 (ENSONIG00000029685)	ENSONIG00000035731	ENSONIG00000027766	ENSONIG00000027997	ENSONIG00000043017	ENSONIG00000035016	ENSONIG00000007156	ENSONIG00000022826
Midas cichlid	MODERN SPECIES	442													irx2a (ENSACIG00000014050) #18	irx1a (ENSACIG00000014076) #20	ADAMTS16 (ENSACIG00000014143) #21	ENSACIG00000014216 #22	ENSACIG00000014234 #27
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT01020000230359.A	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l	ENSGT00940000157621
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT01020000230359.A.a	ENSGT01020000230359.A.b	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a.v	ENSGT01020000230359.B.a.u	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Javanese ricefish	MODERN SPECIES	7	mal2 (ENSOJAG00000017944)	MTSS1 (ENSOJAG00000017957)	TMEM65 (ENSOJAG00000018004)	mboat1 (ENSOJAG00000018014)	E2F3 (ENSOJAG00000018065)	CDKAL1 (ENSOJAG00000018116)	sox4b (ENSOJAG00000018493)	nrsn1 (ENSOJAG00000018497)	slc6a3 (ENSOJAG00000018621) #13	LPCAT1 (ENSOJAG00000019608) #14	irx4a (ENSOJAG00000019927) #17	irx2a (ENSOJAG00000019936) #18	irx1a (ENSOJAG00000019942) #20	lin7b (ENSOJAG00000019948)	ADAMTS16 (ENSOJAG00000020022) #21	ENSOJAG00000020320 #22	ENSOJAG00000020354 #27	ADCY2 (ENSOJAG00000020466) #28	ENSOJAG00000020758	ENSOJAG00000020767	CCR8 (ENSOJAG00000020774)	ENSOJAG00000020779	CCR8 (ENSOJAG00000020789)	trioa (ENSOJAG00000020834)	cobl (ENSOJAG00000021465)	GRB10 (ENSOJAG00000021551)	ddc (ENSOJAG00000022050)	entpd3 (ENSOJAG00000022084)	rbms3 (ENSOJAG00000022101)	azi2 (ENSOJAG00000022113)	cmc1 (ENSOJAG00000022115)
Indian medaka	MODERN SPECIES	5	MTSS1 (ENSOMEG00000013271)	TMEM65 (ENSOMEG00000013323)	mboat1 (ENSOMEG00000013368)	E2F3 (ENSOMEG00000013401)	CDKAL1 (ENSOMEG00000013480)	sox4b (ENSOMEG00000013539)	yipf2 (ENSOMEG00000013568)	nrsn1 (ENSOMEG00000013622)	ENSOMEG00000013653	slc6a3 (ENSOMEG00000013700) #13	LPCAT1 (ENSOMEG00000013762) #14	irx4a (ENSOMEG00000000923) #17	irx2a (ENSOMEG00000013826) #18	irx1a (ENSOMEG00000013869) #20	ADAMTS16 (ENSOMEG00000013974) #21	ENSOMEG00000014033 #22	ENSOMEG00000014052 #27	ADCY2 (ENSOMEG00000014190) #28	ENSOMEG00000014223	ENSOMEG00000014234	ENSOMEG00000014244	CCR8 (ENSOMEG00000014277)	ENSOMEG00000014299	ENSOMEG00000014385	cobl (ENSOMEG00000014589)	GRB10 (ENSOMEG00000014643)	ddc (ENSOMEG00000014693)	entpd3 (ENSOMEG00000014729)	rbms3 (ENSOMEG00000014805)	azi2 (ENSOMEG00000014829)	cmc1 (ENSOMEG00000014859)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT01020000230359.A.d	ENSGT01020000230359.A.c	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a.x	ENSGT01020000230359.B.a.w	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Japanese Medaka HdrR	MODERN SPECIES	7	mboat1 (ENSORLG00000004964)	E2F3 (ENSORLG00000027588)	CDKAL1 (ENSORLG00000004979)	ENSORLG00000022696	sox4b (ENSORLG00000005001)	ENSORLG00000027453	nrsn1 (ENSORLG00000005016)	DCDC2 (ENSORLG00000005024)	slc6a3 (ENSORLG00000005085) #13	LPCAT1 (ENSORLG00000005120) #14	irx4a (ENSORLG00000005134) #17	irx2a (ENSORLG00000005150) #18	irx1a (ENSORLG00000005157) #20	ENSORLG00000023181	ADAMTS16 (ENSORLG00000005170) #21	ENSORLG00000005184 #22	ENSORLG00000027691 #27	ADCY2 (ENSORLG00000030004) #28	ENSORLG00000022103	ENSORLG00000005194	ENSORLG00000005197	ENSORLG00000005211	CCR8 (ENSORLG00000023783)	ENSORLG00000005279	cobl (ENSORLG00000005289)	ENSORLG00000024198	GRB10 (ENSORLG00000005315)	ddc (ENSORLG00000005340)	RBMS3 (ENSORLG00000005370)	azi2 (ENSORLG00000005382)	cmc1 (ENSORLG00000005385)
Chinese medaka	MODERN SPECIES	632															ADAMTS16 (ENSOSIG00000018400) #21	ENSOSIG00000018404 #22	ENSOSIG00000018405 #27	ADCY2 (ENSOSIG00000018449) #28
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Aplocheiloidei	ANCESTRAL SPECIES	26	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Mangrove rivulus	MODERN SPECIES	14	MTSS1 (ENSKMAG00000019293)	TMEM65 (ENSKMAG00000019384)	mboat1 (ENSKMAG00000019402)	ENSKMAG00000019420	CDKAL1 (ENSKMAG00000019441)	sox4b (ENSKMAG00000019466)	ENSKMAG00000019476	nrsn1 (ENSKMAG00000019486)	DCDC2 (ENSKMAG00000019506)	slc6a3 (ENSKMAG00000019572) #13	LPCAT1 (ENSKMAG00000019716) #14	irx4a (ENSKMAG00000019771) #17	irx2a (ENSKMAG00000019798) #18	irx1a (ENSKMAG00000019814) #20	ADAMTS16 (ENSKMAG00000019844) #21	ENSKMAG00000019901 #22	TENT4A (ENSKMAG00000019925) #27	ADCY2 (ENSKMAG00000019954) #28	DNAH5 (ENSKMAG00000020011)	ENSKMAG00000020157	ENSKMAG00000020257	CCR8 (ENSKMAG00000020291)	CCR8 (ENSKMAG00000020303)	ENSKMAG00000020309	ENSKMAG00000020324	GRB10 (ENSKMAG00000020363)	ddc (ENSKMAG00000020433)	entpd3 (ENSKMAG00000020472)	rbms3 (ENSKMAG00000020500)	azi2 (ENSKMAG00000020524)	cmc1 (ENSKMAG00000020538)
Turquoise killifish	MODERN SPECIES	1614	nrsn1 (ENSNFUG00015006820)	DCDC2 (ENSNFUG00015006817)	ENSNFUG00015006813	SLC6A3 (ENSNFUG00015006613) #13	CABZ01078889.1 (ENSNFUG00015006507) #14	ENSNFUG00015006495	irx4a (ENSNFUG00015006485) #17	ENSNFUG00015006482	ENSNFUG00015006478	ENSNFUG00015006474	irx2a (ENSNFUG00015006457) #18	ENSNFUG00015006449	IRX1A (ENSNFUG00015006443) #20	ENSNFUG00015006439	ADAMTS16 (ENSNFUG00015006275) #21	ENSNFUG00015006233 #22	PAPD7 (ENSNFUG00015006218) #27	ENSNFUG00015006212	ADCY2A (ENSNFUG00015005842) #28	ENSNFUG00015005785	DNAH5 (ENSNFUG00015005683)	ENSNFUG00015005565	CCR8 (ENSNFUG00015005539)	ENSNFUG00015005530	ENSNFUG00015005522	COBL (ENSNFUG00015005488)	GRB10 (ENSNFUG00015005208)	DDC (ENSNFUG00015005032)	ENTPD3 (ENSNFUG00015004988)	ENSNFUG00015004981	ENSNFUG00015004976
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Poecilia	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
NAME_6	ANCESTRAL SPECIES	117		ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Sailfin molly	MODERN SPECIES	763															ADAMTS16 (ENSPLAG00000004518) #21	ENSPLAG00000000079 #22	TENT4A (ENSPLAG00000004468) #27
Amazon molly	MODERN SPECIES	252	MTSS1 (ENSPFOG00000016007)	TMEM65 (ENSPFOG00000016069)	mboat1 (ENSPFOG00000016108)	E2F3 (ENSPFOG00000016235)	CDKAL1 (ENSPFOG00000016282)	sox4b (ENSPFOG00000016372)	nrsn1 (ENSPFOG00000016379)	DCDC2 (ENSPFOG00000023870)	slc6a3 (ENSPFOG00000016403) #13	LPCAT1 (ENSPFOG00000016509) #14	ENSPFOG00000016580	irx4a (ENSPFOG00000016581) #17	irx2a (ENSPFOG00000016596) #18	irx1a (ENSPFOG00000016622) #20	ADAMTS16 (ENSPFOG00000016644) #21	ENSPFOG00000016745 #22	TENT4A (ENSPFOG00000016762) #27	ADCY2 (ENSPFOG00000016794) #28	DNAH5 (ENSPFOG00000016948)	ENSPFOG00000017405	CCR8 (ENSPFOG00000020862)	CCR8 (ENSPFOG00000017755)	ENSPFOG00000017756	cobl (ENSPFOG00000017759)	GRB10 (ENSPFOG00000017779)	ddc (ENSPFOG00000017822)	entpd3 (ENSPFOG00000017854)	rbms3 (ENSPFOG00000017887)	azi2 (ENSPFOG00000017923)	cmc1 (ENSPFOG00000017932)	eomesb (ENSPFOG00000017938)
Guppy	MODERN SPECIES	446	TMEM65 (ENSPREG00000010739)	mboat1 (ENSPREG00000010764)	ENSPREG00000010821	ENSPREG00000010836	CDKAL1 (ENSPREG00000010873)	sox4b (ENSPREG00000010954)	nrsn1 (ENSPREG00000010983)	DCDC2 (ENSPREG00000011016)	slc6a3 (ENSPREG00000011037) #13	LPCAT1 (ENSPREG00000011063) #14	irx4a (ENSPREG00000011089) #17	irx2a (ENSPREG00000011115) #18	irx1a (ENSPREG00000011131) #20	ENSPREG00000011164	ADAMTS16 (ENSPREG00000011180) #21	ENSPREG00000011224 #22	ENSPREG00000011244	TENT4A (ENSPREG00000011257) #27	ADCY2 (ENSPREG00000011307) #28	DNAH5 (ENSPREG00000011353)	ENSPREG00000011453	CCR8 (ENSPREG00000011557)	ENSPREG00000011565	ENSPREG00000011591	cobl (ENSPREG00000011603)	GRB10 (ENSPREG00000011626)	ddc (ENSPREG00000011646)	entpd3 (ENSPREG00000011705)	rbms3 (ENSPREG00000011880)	ENSPREG00000011985	azi2 (ENSPREG00000012001)
Platyfish	MODERN SPECIES	17	mal2 (ENSXMAG00000009738)	MTSS1 (ENSXMAG00000009708)	TMEM65 (ENSXMAG00000009701)	mboat1 (ENSXMAG00000009682)	E2F3 (ENSXMAG00000021029)	CDKAL1 (ENSXMAG00000009663)	ENSXMAG00000023721	ENSXMAG00000009656	nrsn1 (ENSXMAG00000005256)	ENSXMAG00000005263	slc6a3 (ENSXMAG00000022758) #13	irx4a (ENSXMAG00000005284) #17	irx2a (ENSXMAG00000021240) #18	irx1a (ENSXMAG00000022002) #20	ADAMTS16 (ENSXMAG00000013842) #21	ENSXMAG00000013833 #22	TENT4A (ENSXMAG00000026228) #27	ADCY2 (ENSXMAG00000000886) #28	DNAH5 (ENSXMAG00000000884)	ENSXMAG00000000815	CCR8 (ENSXMAG00000000814)	ENSXMAG00000025402	ENSXMAG00000020910	cobl (ENSXMAG00000025699)	GRB10 (ENSXMAG00000000791)	ddc (ENSXMAG00000000755)	entpd3 (ENSXMAG00000000746)	rbms3 (ENSXMAG00000021783)	azi2 (ENSXMAG00000014311)	cmc1 (ENSXMAG00000014309)	eomesb (ENSXMAG00000014284)
NAME_4	ANCESTRAL SPECIES	179								ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #13	ENSGT01030000234574.A.a.e.a #14	ENSGT00940000158596.a.a #17	ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #28	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Mummichog	MODERN SPECIES	2213													irx2a (ENSFHEG00000006215) #18	irx1a (ENSFHEG00000006196) #20	ADAMTS16 (ENSFHEG00000000773) #21	ENSFHEG00000006100 #22	TENT4A (ENSFHEG00000006086) #27	ADCY2 (ENSFHEG00000006074) #28	DNAH5 (ENSFHEG00000005963)	ENSFHEG00000005122	CCR8 (ENSFHEG00000004989)	CCR8 (ENSFHEG00000004985)	ENSFHEG00000004960	cobl (ENSFHEG00000004950)	GRB10 (ENSFHEG00000004890)	ddc (ENSFHEG00000004850)	entpd3 (ENSFHEG00000004810)	rbms3 (ENSFHEG00000004787)	azi2 (ENSFHEG00000004614)	cmc1 (ENSFHEG00000004600)	eomesb (ENSFHEG00000004590)
Sheepshead minnow	MODERN SPECIES	211													irx2a (ENSCVAG00000008630) #18	irx1a (ENSCVAG00000008606) #20	ADAMTS16 (ENSCVAG00000008587) #21	ENSCVAG00000008487 #22	TENT4A (ENSCVAG00000008463) #27	ADCY2 (ENSCVAG00000008423) #28	ENSCVAG00000008140	CARMIL1 (ENSCVAG00000008107)	scgn (ENSCVAG00000008001)	CCN3 (ENSCVAG00000007933)	ENSCVAG00000007929	ENSCVAG00000007919	ENSCVAG00000007906	ENSCVAG00000007898	ENSCVAG00000007827	ENSCVAG00000007806	ENSCVAG00000007799	ENSCVAG00000007793	ENSCVAG00000007737
Tiger tail seahorse	MODERN SPECIES	288								nrsn1 (ENSHCOG00000000963)	ENSHCOG00000000960	slc6a3 (ENSHCOG00000000952) #13	LPCAT1 (ENSHCOG00000000944) #14	irx4a (ENSHCOG00000000938) #17	irx2a (ENSHCOG00000000935) #18	irx1a (ENSHCOG00000000932) #20	ADAMTS16 (ENSHCOG00000000925) #21	ENSHCOG00000000919 #22	TENT4A (ENSHCOG00000000915) #27	ADCY2 (ENSHCOG00000000902) #28	DNAH5 (ENSHCOG00000000887)	ENSHCOG00000021087	CCR8 (ENSHCOG00000021093)	ENSHCOG00000021096	CX3CR1 (ENSHCOG00000021098)	cobl (ENSHCOG00000021103)	GRB10 (ENSHCOG00000021109)	cndp1 (ENSHCOG00000021112)	taf2 (ENSHCOG00000021114)	enpp2 (ENSHCOG00000021118)	ADGRB1 (ENSHCOG00000021123)	ENSHCOG00000021125	cep162 (ENSHCOG00000021128)
Pinecone sodierfish	MODERN SPECIES	7	E2F3 (ENSMMDG00005017765)	CDKAL1 (ENSMMDG00005017430)	sox4b (ENSMMDG00005017419)	ENSMMDG00005001972	ENSMMDG00005001206	nrsn1 (ENSMMDG00005024108)	DCDC2 (ENSMMDG00005024107)	slc6a3 (ENSMMDG00005024105) #13	LPCAT1 (ENSMMDG00005024104) #14	irx4a (ENSMMDG00005024102) #17	irx2a (ENSMMDG00005024101) #18	irx1a (ENSMMDG00005024099) #20	ADAMTS16 (ENSMMDG00005024097) #21	ENSMMDG00005024095 #21	ENSMMDG00005024094 #21	ENSMMDG00005024091 #22	ENSMMDG00005024084 #27	ADCY2 (ENSMMDG00005024018) #28	DNAH5 (ENSMMDG00005023978)	ENSMMDG00005023954	CCR8 (ENSMMDG00005023940)	ENSMMDG00005023935	ENSMMDG00005023933	GRB10 (ENSMMDG00005023522)	ddc (ENSMMDG00005023491)	entpd3 (ENSMMDG00005023476)	rbms3 (ENSMMDG00005023469)	azi2 (ENSMMDG00005023467)	cmc1 (ENSMMDG00005023465)	eomesb (ENSMMDG00005023437)	ANKIB1 (ENSMMDG00005023419)
Cod	MODERN SPECIES	2	ENSGMOG00000034747	MBOAT1 (ENSGMOG00000014199)	E2F3 (ENSGMOG00000014178)	CDKAL1 (ENSGMOG00000001207)	sox4b (ENSGMOG00000031834)	ENSGMOG00000031953	nrsn1 (ENSGMOG00000026344)	DCDC2 (ENSGMOG00000029908)	slc6a3 (ENSGMOG00000006703) #13	ENSGMOG00000006686 #14	irx4a (ENSGMOG00000006681) #17	irx2a (ENSGMOG00000033075) #18	ENSGMOG00000033032	irx1a (ENSGMOG00000006669) #20	ADAMTS16 (ENSGMOG00000005407) #21	ENSGMOG00000028748 #22	ENSGMOG00000026013 #27	ENSGMOG00000023662	ENSGMOG00000004768 #28	ENSGMOG00000022719	ENSGMOG00000033263	ENSGMOG00000036436	ENSGMOG00000004653	cobl (ENSGMOG00000032107)	ENSGMOG00000004480	ddc (ENSGMOG00000036492)	ddc (ENSGMOG00000004282)	entpd3 (ENSGMOG00000003928)	RBMS3 (ENSGMOG00000032451)	ENSGMOG00000029549	azi2 (ENSGMOG00000003761)
Protacanthopterygii	ANCESTRAL SPECIES	263													ENSGT00940000161198 #18	ENSGT00940000160429.h.a #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4659														ENSHHUG00000044620	ENSHHUG00000044627	ENSHHUG00000044635 #22	ENSHHUG00000044637
Huchen	MODERN SPECIES	8855																ENSHHUG00000000684 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	31								irx4a (ENSOKIG00005027230) #17	ENSOKIG00005027219	ENSOKIG00005027187	irx2a (ENSOKIG00005027170) #18	irx1a (ENSOKIG00005027150) #20	ENSOKIG00005027148	ENSOKIG00005027127	ENSOKIG00005027103 #22	ENSOKIG00005027068 #22	FAM210A (ENSOKIG00005027051)	ldlrad4b (ENSOKIG00005027022)	ENSOKIG00005027001	ENSOKIG00005026958	ENSOKIG00005026936	SEH1L (ENSOKIG00005026610)	ptpn2a (ENSOKIG00005026578)	cep76 (ENSOKIG00005026474)	id4 (ENSOKIG00005026460)	ENSOKIG00005026446	NXPE3 (ENSOKIG00005018374)	ncalda (ENSOKIG00005018360)	ENSOKIG00005018355	ENSOKIG00005018205	ENSOKIG00005017998
Coho salmon	MODERN SPECIES	31									irx4a (ENSOKIG00005027230) #17	ENSOKIG00005027219	ENSOKIG00005027187	irx2a (ENSOKIG00005027170) #18	irx1a (ENSOKIG00005027150) #20	ENSOKIG00005027148	ENSOKIG00005027127	ENSOKIG00005027103 #22	ENSOKIG00005027068 #22	FAM210A (ENSOKIG00005027051)	ldlrad4b (ENSOKIG00005027022)	ENSOKIG00005027001	ENSOKIG00005026958	ENSOKIG00005026936	SEH1L (ENSOKIG00005026610)	ptpn2a (ENSOKIG00005026578)	cep76 (ENSOKIG00005026474)	id4 (ENSOKIG00005026460)	ENSOKIG00005026446	NXPE3 (ENSOKIG00005018374)	ncalda (ENSOKIG00005018360)	ENSOKIG00005018355	ENSOKIG00005018205
Rainbow trout	MODERN SPECIES	142															ENSOMYG00000071895	ENSOMYG00000051334 #22	ENSOMYG00000070626 #22	ENSOMYG00000066089	mc2r (ENSOMYG00000023652)	FAM210A (ENSOMYG00000065862)	ldlrad4b (ENSOMYG00000038984)	ENSOMYG00000060198	CEP192 (ENSOMYG00000056302)	SEH1L (ENSOMYG00000038901)	ENSOMYG00000069998	PTPN2 (ENSOMYG00000055302)	CEP76 (ENSOMYG00000066050)	ENSOMYG00000074957	ENSOMYG00000052390
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.b #22
Huchen	MODERN SPECIES	9702																ENSHHUG00000007658 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
River trout	DUPLICATION
River trout	MODERN SPECIES	234												ENSSTUG00000041071	fam210ab (ENSSTUG00000041063)	mc2r (ENSSTUG00000041045)	ENSSTUG00000040980 #22	ENSSTUG00000040962 #22	ENSSTUG00000040939 #22	mc2r (ENSSTUG00000040930)	fam210ab (ENSSTUG00000040923)
River trout	MODERN SPECIES	234											ENSSTUG00000041071	fam210ab (ENSSTUG00000041063)	mc2r (ENSSTUG00000041045)	ENSSTUG00000040980 #22	ENSSTUG00000040962 #22	ENSSTUG00000040939 #22	mc2r (ENSSTUG00000040930)	fam210ab (ENSSTUG00000040923)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.n #22
Salmoninae_a	ANCESTRAL SPECIES	284																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c
Salmo	ANCESTRAL SPECIES	322																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	250																ENSSSAG00000092660 #22	mc2r (ENSSSAG00000020389)	fam210ab (ENSSSAG00000090105)	ldlrad4b (ENSSSAG00000098836)
Atlantic salmon	MODERN SPECIES	413															ENSSSAG00000108349	ENSSSAG00000087379 #22	ENSSSAG00000093585
Atlantic salmon	MODERN SPECIES	412																ENSSSAG00000112107 #22
Atlantic salmon	MODERN SPECIES	818																ENSSSAG00000118968 #22	mc2r (ENSSSAG00000090475)	ENSSSAG00000120298	ldlrad4b (ENSSSAG00000098527)
Atlantic salmon	MODERN SPECIES	819																ENSSSAG00000057270 #22	ENSSSAG00000122126	mc2r (ENSSSAG00000107026)	ENSSSAG00000089072	ldlrad4b (ENSSSAG00000009571)
River trout	MODERN SPECIES	234												fam210ab (ENSSTUG00000040923)	mc2r (ENSSTUG00000040930)	ENSSTUG00000040939 #22	ENSSTUG00000040962 #22	ENSSTUG00000040980 #22	mc2r (ENSSTUG00000041045)	fam210ab (ENSSTUG00000041063)	ENSSTUG00000041071
Oncorhynchus	ANCESTRAL SPECIES	100																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c	ENSGT00940000154686.b.e.a	ENSGT00390000000781.g	ENSGT00940000162435	ENSGT00940000154697.a.a.a.a	ENSGT00420000029792.qb.a.e.a	ENSGT00390000017478	ENSGT00940000159321	ENSGT00940000160344	ENSGT00940000160530	ENSGT00940000154684.cb.a.a.a	ENSGT00500000044936.c.a	ENSGT00530000063692.a
Rainbow trout	MODERN SPECIES	142														ENSOMYG00000071895	ENSOMYG00000051334 #22	ENSOMYG00000070626 #22	ENSOMYG00000066089	mc2r (ENSOMYG00000023652)	FAM210A (ENSOMYG00000065862)	ldlrad4b (ENSOMYG00000038984)	ENSOMYG00000060198	CEP192 (ENSOMYG00000056302)	SEH1L (ENSOMYG00000038901)	ENSOMYG00000069998	PTPN2 (ENSOMYG00000055302)	CEP76 (ENSOMYG00000066050)	ENSOMYG00000074957	ENSOMYG00000052390
Oncorhynchus_a	ANCESTRAL SPECIES	368																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a.a	ENSGT00390000000724.c.b.c
Chinook salmon	MODERN SPECIES	1192															ENSOTSG00005023651	ENSOTSG00005023647 #22	mc2r (ENSOTSG00005023646)	fam210ab (ENSOTSG00005023645)
Northern pike	MODERN SPECIES	15	SEH1L (ENSELUG00000003728)	CEP192 (ENSELUG00000003767)	ldlrad4b (ENSELUG00000003793)	fam210ab (ENSELUG00000003811)	mc5rb (ENSELUG00000003825)	mc2r (ENSELUG00000003832)	irgf1 (ENSELUG00000003864)	IRGC (ENSELUG00000031960)	ENSELUG00000003885	irx2a (ENSELUG00000003905) #18	ENSELUG00000031605	ENSELUG00000026048	irx1a (ENSELUG00000003928) #20	ADAMTS16 (ENSELUG00000003956) #21	ENSELUG00000003940	ENSELUG00000031442 #22	ankrd10b (ENSELUG00000004002)	ing1 (ENSELUG00000029885)	naxd (ENSELUG00000004084)	rab20 (ENSELUG00000004092)	ENSELUG00000004187	ENSELUG00000030152	ENSELUG00000026538	ENSELUG00000004234	COL4A1 (ENSELUG00000004344)	IRS2 (ENSELUG00000004409)	MYO16 (ENSELUG00000004440)	tnfsf13b (ENSELUG00000004450)	abhd13 (ENSELUG00000004460)	NALF1 (ENSELUG00000004463)	CCKBR (ENSELUG00000004477)
Spotted gar	MODERN SPECIES	649	ENSLOCG00000008963	mboat1 (ENSLOCG00000008952)	e2f3 (ENSLOCG00000008942)	CDKAL1 (ENSLOCG00000008933)	sox4b (ENSLOCG00000018338)	nrsn1l (ENSLOCG00000008928)	DCDC2 (ENSLOCG00000008919)	slc6a3 (ENSLOCG00000008899) #13	lpcat1 (ENSLOCG00000008876) #14	mrpl36 (ENSLOCG00000008869) #15	irx4a (ENSLOCG00000008860) #17	ENSLOCG00000008854	irx2a (ENSLOCG00000008842) #18	irx1a (ENSLOCG00000008834) #20	ADAMTS16 (ENSLOCG00000008808) #21	ICE1 (ENSLOCG00000008797) #22	med10 (ENSLOCG00000008783) #23	UBE2QL1 (ENSLOCG00000008774) #24	nsun2 (ENSLOCG00000008755) #25	srd5a1 (ENSLOCG00000008745) #26	TENT4A (ENSLOCG00000008727) #27	zgc:91890 (ENSLOCG00000008715)	slc52a2 (ENSLOCG00000008703)	ENSLOCG00000008699	ENSLOCG00000008682	ENSLOCG00000008673	pleca (ENSLOCG00000008626)	vps28 (ENSLOCG00000008615)	mapk15 (ENSLOCG00000008598)	grinaa (ENSLOCG00000008582)	ENSLOCG00000008569
Reedfish	MODERN SPECIES	4	ENSECRG00000012599	slc6a19b (ENSECRG00000012551) #9	slc6a18 (ENSECRG00000012511) #10	TERT (ENSECRG00000012478) #11	clptm1l (ENSECRG00000012421) #12	slc6a3 (ENSECRG00000012348) #13	lpcat1 (ENSECRG00000012289) #14	mrpl36 (ENSECRG00000012269) #15	ndufs6 (ENSECRG00000012255) #16	irx4a (ENSECRG00000012242) #17	ENSECRG00000012221	irx2a (ENSECRG00000012213) #18	irx1a (ENSECRG00000012192) #20	tmed3 (ENSECRG00000012180)	ENSECRG00000012108 #21	ENSECRG00000012036 #22	ENSECRG00000012012	nsun2 (ENSECRG00000011957) #25	srd5a1 (ENSECRG00000011900) #26	TENT4A (ENSECRG00000011884) #27	adcy2b (ENSECRG00000011869) #28	CFAP90 (ENSECRG00000011845) #29	DNAH5 (ENSECRG00000011742)	ENSECRG00000011637	trioa (ENSECRG00000011501)	ENSECRG00000011449	glb1 (ENSECRG00000011418)	ENSECRG00000011387	ENSECRG00000011368	ENSECRG00000011343	CX3CR1 (ENSECRG00000018885)
Elephant shark	MODERN SPECIES	1564															ADAMTS16 (ENSCMIG00000007997) #21	ENSCMIG00000007981 #22	med10 (ENSCMIG00000007979) #23	nsun2 (ENSCMIG00000007868) #25	srd5a1 (ENSCMIG00000007840) #26	TENT4A (ENSCMIG00000007824) #27	adcy2b (ENSCMIG00000007660) #28	CFAP90 (ENSCMIG00000007612) #29	ENSCMIG00000007590	ENSCMIG00000007470	VPS4B (ENSCMIG00000007311)	kdsr (ENSCMIG00000007261)	BCL2 (ENSCMIG00000007255)	gsdme (ENSCMIG00000007253)	OSBPL3 (ENSCMIG00000007003)	cycsb (ENSCMIG00000006898)	ENSCMIG00000006893
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Hagfish	MODERN SPECIES	1063													ENSEBUG00000005144	ENSEBUG00000008815	ENSEBUG00000008124	ENSEBUG00000016020 #22	ENSEBUG00000011086	rp9 (ENSEBUG00000014519)	ahcy (ENSEBUG00000013750)	ENSEBUG00000012077	ENSEBUG00000005905
Vertebrata	DUPLICATION
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183199.a.a ##22
Gnathostomata	ANCESTRAL SPECIES	437														ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT01030000234788	ENSGT00390000017765	ENSGT00940000155162	ENSGT00940000157676
Euteleostomi	ANCESTRAL SPECIES	99														ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000163520.A	ENSGT00940000163520.B	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT00870000136508.c.a	ENSGT00660000097129	ENSGT00940000157853	ENSGT00940000159493	ENSGT00960000193219
Sarcopterygii	ANCESTRAL SPECIES	57										ENSGT00740000116994	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000163520.A	ENSGT00940000163520.B	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.c
Tetrapoda	ANCESTRAL SPECIES	54	ENSGT00940000157670	ENSGT00940000175256	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.A.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Amniota	ANCESTRAL SPECIES	29	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.A.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mammalia	ANCESTRAL SPECIES	29	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341
Theria	ANCESTRAL SPECIES	15	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.b	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.a	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00690000103985	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Opossum	MODERN SPECIES	3	ENSMODG00000038072	RBM7 (ENSMODG00000013918)	ENSMODG00000013913	ENSMODG00000016415	ENSMODG00000029062	ENSMODG00000013881	NXPE4 (ENSMODG00000013878)	CADM1 (ENSMODG00000013865)	BUD13 (ENSMODG00000013825)	ENSMODG00000013816	APOA5 (ENSMODG00000036952)	ENSMODG00000013802	ENSMODG00000046429	APOA1 (ENSMODG00000051445)	SIK3 (ENSMODG00000013784)	PAFAH1B2 (ENSMODG00000013767) ##22	SIDT2 (ENSMODG00000013760)	TAGLN (ENSMODG00000013744)	ENSMODG00000049411	PCSK7 (ENSMODG00000013739)	RNF214 (ENSMODG00000013720)	BACE1 (ENSMODG00000013692)	ENSMODG00000013678	DSCAML1 (ENSMODG00000013655)	ENSMODG00000042436	ENSMODG00000025563	FXYD6 (ENSMODG00000024466)	TMPRSS13 (ENSMODG00000013569)	ENSMODG00000013564	ENSMODG00000013560	SCN4B (ENSMODG00000013544)
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.b	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.a	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00690000103985
Diprotodontia	ANCESTRAL SPECIES	62	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.b	ENSGT00950000182866.D.c.g.a	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b
Diprotodontia_a	ANCESTRAL SPECIES	60	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b.a	ENSGT00390000011708.a.k.b.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.b	ENSGT00950000182866.D.c.g.a	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b
Common wonbat	MODERN SPECIES	755				RBM7 (ENSVURG00010024377)	REXO2 (ENSVURG00010024382)	ENSVURG00010024389	ENSVURG00010024396	CADM1 (ENSVURG00010024413)	ENSVURG00010024441	ZPR1 (ENSVURG00010024449)	ENSVURG00010024455	ENSVURG00010024458	ENSVURG00010024460	SIK3 (ENSVURG00010024472)	ENSVURG00010024489	PAFAH1B2 (ENSVURG00010024491) ##22	SIDT2 (ENSVURG00010024499)	TAGLN (ENSVURG00010024508)	PCSK7 (ENSVURG00010024512)	RNF214 (ENSVURG00010024514)	BACE1 (ENSVURG00010024516)	ENSVURG00010024522	DSCAML1 (ENSVURG00010024531)	ENSVURG00010024538	ENSVURG00010024539
koala	MODERN SPECIES	35	ENSPCIG00000011222	RBM7 (ENSPCIG00000011225)	REXO2 (ENSPCIG00000011227)	ENSPCIG00000011232	ENSPCIG00000011243	NXPE4 (ENSPCIG00000011259)	ENSPCIG00000015270	CADM1 (ENSPCIG00000015235)	ENSPCIG00000028567	ENSPCIG00000000146	APOA5 (ENSPCIG00000000091)	ENSPCIG00000023964	ENSPCIG00000023963	ENSPCIG00000023961	SIK3 (ENSPCIG00000023946)	PAFAH1B2 (ENSPCIG00000015153) ##22	SIDT2 (ENSPCIG00000009826)	TAGLN (ENSPCIG00000009829)	PCSK7 (ENSPCIG00000009832)	RNF214 (ENSPCIG00000009834)	BACE1 (ENSPCIG00000009842)	ENSPCIG00000010201	ENSPCIG00000010507	DSCAML1 (ENSPCIG00000010224)	ENSPCIG00000031272	ENSPCIG00000017438	ENSPCIG00000017439	ENSPCIG00000010511	PDE2A (ENSPCIG00000010517)	ARAP1 (ENSPCIG00000010521)	STARD10 (ENSPCIG00000010527)
Wallaby	MODERN SPECIES	7605																PAFAH1B2 (ENSMEUG00000013450) ##22
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES	2	ZBTB16 (ENSSHAG00000009882)	ENSSHAG00000029533	ENSSHAG00000026826	RBM7 (ENSSHAG00000008426)	REXO2 (ENSSHAG00000008008)	ENSSHAG00000005505	ENSSHAG00000004480	CADM1 (ENSSHAG00000015715)	ENSSHAG00000024190	ZPR1 (ENSSHAG00000007622)	APOA5 (ENSSHAG00000029383)	ENSSHAG00000026300	ENSSHAG00000013306	ENSSHAG00000013226	SIK3 (ENSSHAG00000012560)	ENSSHAG00000022660 ##22	SIDT2 (ENSSHAG00000011203)	TAGLN (ENSSHAG00000011128)	PCSK7 (ENSSHAG00000010944)	RNF214 (ENSSHAG00000010827)	BACE1 (ENSSHAG00000010636)	ENSSHAG00000010066	DSCAML1 (ENSSHAG00000008967)	ENSSHAG00000004432	ENSSHAG00000025068	ENSSHAG00000006255	ENSSHAG00000031069	ENSSHAG00000007754	MYO7A (ENSSHAG00000008693)	CAPN5 (ENSSHAG00000010007)	ACER3 (ENSSHAG00000028417)
Tasmanian devil	MODERN SPECIES	3	FBXO28 (ENSSHAG00000029324)	TP53BP2 (ENSSHAG00000015392)	CAPN2 (ENSSHAG00000027599)	ENSSHAG00000014684	ENSSHAG00000013936	SUSD4 (ENSSHAG00000012796)	TLR5 (ENSSHAG00000025032)	DISP1 (ENSSHAG00000011075)	BROX (ENSSHAG00000009264)	AIDA (ENSSHAG00000008867)	ENSSHAG00000008328	ENSSHAG00000029037	TAF1A (ENSSHAG00000007872)	HHIPL2 (ENSSHAG00000007524)	DUSP10 (ENSSHAG00000025565)	ENSSHAG00000012512 ##22	HLX (ENSSHAG00000012054)	ENSSHAG00000021614	MTARC2 (ENSSHAG00000011042)	ENSSHAG00000022205	ENSSHAG00000021067	ENSSHAG00000023068	CCDC18 (ENSSHAG00000001343)	DR1 (ENSSHAG00000023492)	FNBP1L (ENSSHAG00000002341)	BCAR3 (ENSSHAG00000004089)	ENSSHAG00000032347	GCLM (ENSSHAG00000004946)	ENSSHAG00000005994 ##26	ABCA4 (ENSSHAG00000007079)	ENSSHAG00000000933
Eutheria	ANCESTRAL SPECIES	3	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Boreoeutheria	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Euarchontoglires	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Primates	ANCESTRAL SPECIES		ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Strepsirrhini	ANCESTRAL SPECIES	6	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Lemuriformes	ANCESTRAL SPECIES	13	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mouse lemur	MODERN SPECIES	27	RBM7 (ENSMICG00000042981)	REXO2 (ENSMICG00000010094)	NXPE1 (ENSMICG00000014692)	ENSMICG00000048026	NXPE4 (ENSMICG00000004444)	ENSMICG00000032449	CADM1 (ENSMICG00000002734)	BUD13 (ENSMICG00000002320)	ENSMICG00000002322	APOA5 (ENSMICG00000046852)	APOA4 (ENSMICG00000002332)	APOC3 (ENSMICG00000047019)	APOA1 (ENSMICG00000002339)	SIK3 (ENSMICG00000002343)	ENSMICG00000045255	PAFAH1B2 (ENSMICG00000032949) ##22	SIDT2 (ENSMICG00000002357)	TAGLN (ENSMICG00000002371)	PCSK7 (ENSMICG00000002375)	RNF214 (ENSMICG00000002383)	BACE1 (ENSMICG00000002392)	CEP164 (ENSMICG00000041400)	DSCAML1 (ENSMICG00000002418)	FXYD2 (ENSMICG00000043431)	FXYD6 (ENSMICG00000002438)	TMPRSS13 (ENSMICG00000002440)	IL10RA (ENSMICG00000043191)	SMIM35 (ENSMICG00000046322)	ENSMICG00000002447	SCN4B (ENSMICG00000036120)	SCN2B (ENSMICG00000048084)
Lemuriformes_a	ANCESTRAL SPECIES	22	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Coquerels sifaka	MODERN SPECIES	739						BUD13 (ENSPCOG00000022101)	ENSPCOG00000011429	ENSPCOG00000028153	APOA5 (ENSPCOG00000022919)	APOA4 (ENSPCOG00000013241)	APOC3 (ENSPCOG00000020408)	APOA1 (ENSPCOG00000009712)	SIK3 (ENSPCOG00000017615)	ENSPCOG00000026634	ENSPCOG00000013401	PAFAH1B2 (ENSPCOG00000020975) ##22	SIDT2 (ENSPCOG00000022492)	TAGLN (ENSPCOG00000027846)	PCSK7 (ENSPCOG00000021815)	RNF214 (ENSPCOG00000013799)	BACE1 (ENSPCOG00000023030)	CEP164 (ENSPCOG00000015637)	DSCAML1 (ENSPCOG00000020953)
Greater bamboo lemur	MODERN SPECIES	351	C11orf71 (ENSPSMG00000022783)	RBM7 (ENSPSMG00000022804)	REXO2 (ENSPSMG00000022850)	NXPE1 (ENSPSMG00000022873)	NXPE4 (ENSPSMG00000022880)	CADM1 (ENSPSMG00000023087)	BUD13 (ENSPSMG00000000086)	ENSPSMG00000000094	ENSPSMG00000000147	APOA5 (ENSPSMG00000000169)	ENSPSMG00000000176	APOA4 (ENSPSMG00000000186)	APOC3 (ENSPSMG00000000205)	APOA1 (ENSPSMG00000000233)	SIK3 (ENSPSMG00000000370)	PAFAH1B2 (ENSPSMG00000000427) ##22	SIDT2 (ENSPSMG00000000504)	TAGLN (ENSPSMG00000000551)	PCSK7 (ENSPSMG00000000646)	RNF214 (ENSPSMG00000000841)	BACE1 (ENSPSMG00000001059)	CEP164 (ENSPSMG00000001204)	DSCAML1 (ENSPSMG00000001363)	ENSPSMG00000001374	FXYD2 (ENSPSMG00000001399)	FXYD6 (ENSPSMG00000001455)	TMPRSS13 (ENSPSMG00000001533)	IL10RA (ENSPSMG00000001540)	SMIM35 (ENSPSMG00000001545)	ENSPSMG00000001554	TMPRSS4 (ENSPSMG00000001574)
Bushbaby	MODERN SPECIES	223																PAFAH1B2 (ENSOGAG00000025296) ##22	SIDT2 (ENSOGAG00000006441)	TAGLN (ENSOGAG00000006450)	ENSOGAG00000006453	RNF214 (ENSOGAG00000006459)	BACE1 (ENSOGAG00000006467)	ENSOGAG00000033134	DSCAML1 (ENSOGAG00000006480)	FXYD2 (ENSOGAG00000029448)	FXYD6 (ENSOGAG00000015394)	TMPRSS13 (ENSOGAG00000006577)	IL10RA (ENSOGAG00000025827)	ENSOGAG00000009088	TMPRSS4 (ENSOGAG00000002420)	SCN4B (ENSOGAG00000025805)	SCN2B (ENSOGAG00000009321)
Haplorrhini	ANCESTRAL SPECIES		ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Tarsier	MODERN SPECIES	3330															ENSTSYG00000027038	PAFAH1B2 (ENSTSYG00000032203) ##22	SIDT2 (ENSTSYG00000034092)	TAGLN (ENSTSYG00000036174)	PCSK7 (ENSTSYG00000003231)	RNF214 (ENSTSYG00000003281)	BACE1 (ENSTSYG00000003291)	DSCAML1 (ENSTSYG00000032304)	FXYD2 (ENSTSYG00000036012)	FXYD6 (ENSTSYG00000035019)	TMPRSS13 (ENSTSYG00000012795)	IL10RA (ENSTSYG00000011813)	SMIM35 (ENSTSYG00000029921)
Simiiformes	DUPLICATION
Simiiformes	ANCESTRAL SPECIES		ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Catarrhini	ANCESTRAL SPECIES	1	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Cercopithecidae	ANCESTRAL SPECIES		ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00730000111921	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483
Cercopithecinae	ANCESTRAL SPECIES	3	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00730000111921	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483
Vervet Monkey	MODERN SPECIES		NNMT (ENSCSAG00000002757)	C11orf71 (ENSCSAG00000000596)	RBM7 (ENSCSAG00000002756)	REXO2 (ENSCSAG00000002754)	NXPE1 (ENSCSAG00000002753)	NXPE4 (ENSCSAG00000002750)	NXPE2 (ENSCSAG00000002745)	CADM1 (ENSCSAG00000002740)	BUD13 (ENSCSAG00000002732)	ZPR1 (ENSCSAG00000002722)	APOA5 (ENSCSAG00000002717)	APOA4 (ENSCSAG00000002712)	APOC3 (ENSCSAG00000002711)	APOA1 (ENSCSAG00000002709)	SIK3 (ENSCSAG00000002703)	PAFAH1B2 (ENSCSAG00000002695) ##22	SIDT2 (ENSCSAG00000002692)	TAGLN (ENSCSAG00000002690)	PCSK7 (ENSCSAG00000002686)	RNF214 (ENSCSAG00000002685)	BACE1 (ENSCSAG00000002684)	CEP164 (ENSCSAG00000002683)	DSCAML1 (ENSCSAG00000002669)	ENSCSAG00000002643	FXYD2 (ENSCSAG00000002641)	FXYD6 (ENSCSAG00000002638)	TMPRSS13 (ENSCSAG00000002630)	IL10RA (ENSCSAG00000002623)	TMPRSS4 (ENSCSAG00000002620)	SCN4B (ENSCSAG00000002614)	SCN2B (ENSCSAG00000002611)
Cercopithecinae_a	ANCESTRAL SPECIES	2	ENSGT00910000146938	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00730000111921	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483
Macaca	ANCESTRAL SPECIES	2	ENSGT00390000011708.a.k.b	ENSGT00910000146938	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Macaca_a	ANCESTRAL SPECIES	3	ENSGT01100000263493.a.a.a.b.a.a.b.b.a.a.a.a.a.a.a.a.b.b	ENSGT00910000146938	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00900000143310	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00730000111921	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Rhesus	MODERN SPECIES	5	C14H11orf71 (ENSMMUG00000051785)	RBM7 (ENSMMUG00000012270)	REXO2 (ENSMMUG00000012269)	NXPE1 (ENSMMUG00000012268)	NXPE2 (ENSMMUG00000030902)	CADM1 (ENSMMUG00000021628)	ENSMMUG00000050683	BUD13 (ENSMMUG00000020002)	ZPR1 (ENSMMUG00000053039)	APOA5 (ENSMMUG00000057425)	APOA4 (ENSMMUG00000016125)	ENSMMUG00000056610	ENSMMUG00000060987	APOA1 (ENSMMUG00000044545)	SIK3 (ENSMMUG00000016128)	PAFAH1B2 (ENSMMUG00000002050) ##22	SIDT2 (ENSMMUG00000002053)	TAGLN (ENSMMUG00000002058)	PCSK7 (ENSMMUG00000002061)	RNF214 (ENSMMUG00000002067)	BACE1 (ENSMMUG00000007785)	CEP164 (ENSMMUG00000007791)	DSCAML1 (ENSMMUG00000007794)	FXYD6 (ENSMMUG00000007796)	TMPRSS13 (ENSMMUG00000007618)	IL10RA (ENSMMUG00000059436)	SMIM35 (ENSMMUG00000053399)	TMPRSS4 (ENSMMUG00000007620)	SCN4B (ENSMMUG00000063655)	SCN2B (ENSMMUG00000061384)	ENSMMUG00000058280
Pig-tailed macaque	MODERN SPECIES	537	NNMT (ENSMNEG00000036692)	ENSMNEG00000028371	C11orf71 (ENSMNEG00000037393)	RBM7 (ENSMNEG00000005397)	REXO2 (ENSMNEG00000033379)	NXPE1 (ENSMNEG00000028820)	NXPE2 (ENSMNEG00000039026)	CADM1 (ENSMNEG00000043391)	BUD13 (ENSMNEG00000039484)	ZPR1 (ENSMNEG00000032911)	APOA5 (ENSMNEG00000041189)	APOA4 (ENSMNEG00000038703)	APOC3 (ENSMNEG00000044814)	APOA1 (ENSMNEG00000040977)	SIK3 (ENSMNEG00000036838)	PAFAH1B2 (ENSMNEG00000042408) ##22	SIDT2 (ENSMNEG00000032672)	TAGLN (ENSMNEG00000030425)	PCSK7 (ENSMNEG00000043226)	RNF214 (ENSMNEG00000044588)	ENSMNEG00000040272	BACE1 (ENSMNEG00000043700)	ENSMNEG00000038724	CEP164 (ENSMNEG00000030712)	DSCAML1 (ENSMNEG00000032722)	FXYD2 (ENSMNEG00000040890)	FXYD6 (ENSMNEG00000030011)	TMPRSS13 (ENSMNEG00000042137)	IL10RA (ENSMNEG00000034917)	SMIM35 (ENSMNEG00000008662)	TMPRSS4 (ENSMNEG00000032161)
Cercopithecinae_b	ANCESTRAL SPECIES	21	ENSGT00910000146938	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Olive baboon	MODERN SPECIES	3	NNMT (ENSPANG00000013188)	C11orf71 (ENSPANG00000008843)	RBM7 (ENSPANG00000009431)	REXO2 (ENSPANG00000010675)	NXPE4 (ENSPANG00000005599)	NXPE2 (ENSPANG00000004639)	CADM1 (ENSPANG00000015042)	ENSPANG00000049158	ENSPANG00000043017	BUD13 (ENSPANG00000006431)	ENSPANG00000038163	APOA4 (ENSPANG00000003384)	APOC3 (ENSPANG00000008369)	APOA1 (ENSPANG00000008368)	SIK3 (ENSPANG00000019733)	PAFAH1B2 (ENSPANG00000015041) ##22	SIDT2 (ENSPANG00000018905)	TAGLN (ENSPANG00000002535)	PCSK7 (ENSPANG00000000210)	RNF214 (ENSPANG00000010747)	BACE1 (ENSPANG00000013147)	CEP164 (ENSPANG00000009880)	DSCAML1 (ENSPANG00000003383)	ENSPANG00000035962	FXYD6 (ENSPANG00000004274)	IL10RA (ENSPANG00000018369)	SMIM35 (ENSPANG00000033529)	TMPRSS4 (ENSPANG00000004728)	SCN4B (ENSPANG00000000441)	SCN2B (ENSPANG00000011055)	JAML (ENSPANG00000010111)
Cercopithecinae_d	ANCESTRAL SPECIES	30									ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Drill	MODERN SPECIES	120																PAFAH1B2 (ENSMLEG00000033223) ##22	SIDT2 (ENSMLEG00000029296)	TAGLN (ENSMLEG00000022414)	SIK3 (ENSMLEG00000040004)	APOA1 (ENSMLEG00000041670)	APOC3 (ENSMLEG00000027398)	APOA4 (ENSMLEG00000028657)	APOA5 (ENSMLEG00000029722)	ZPR1 (ENSMLEG00000033232)	BUD13 (ENSMLEG00000010496)
Sooty mangabey	MODERN SPECIES	603									BUD13 (ENSCATG00000042919)	ZPR1 (ENSCATG00000043428)	APOA5 (ENSCATG00000006664)	APOA4 (ENSCATG00000044061)	APOC3 (ENSCATG00000044734)	APOA1 (ENSCATG00000044886)	SIK3 (ENSCATG00000031902)	PAFAH1B2 (ENSCATG00000037411) ##22	SIDT2 (ENSCATG00000008891)	TAGLN (ENSCATG00000044979)	PCSK7 (ENSCATG00000012634)	RNF214 (ENSCATG00000037769)	BACE1 (ENSCATG00000031860)	ENSCATG00000041904	CEP164 (ENSCATG00000036064)	ENSCATG00000032021	ENSCATG00000032125	DSCAML1 (ENSCATG00000040311)	ENSCATG00000017043	FXYD2 (ENSCATG00000042080)	FXYD6 (ENSCATG00000034107)	TMPRSS13 (ENSCATG00000041929)	IL10RA (ENSCATG00000044388)
Rhinopithecus	ANCESTRAL SPECIES	30	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00910000148140	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Black snub-nosed monkey	MODERN SPECIES	722	NNMT (ENSRBIG00000041263)	C11orf71 (ENSRBIG00000019664)	RBM7 (ENSRBIG00000044762)	REXO2 (ENSRBIG00000037809)	NXPE1 (ENSRBIG00000039952)	NXPE4 (ENSRBIG00000026591)	NXPE2 (ENSRBIG00000038016)	CADM1 (ENSRBIG00000038512)	BUD13 (ENSRBIG00000001857)	ZPR1 (ENSRBIG00000041749)	APOA5 (ENSRBIG00000031722)	APOA4 (ENSRBIG00000027521)	APOC3 (ENSRBIG00000003998)	APOA1 (ENSRBIG00000044736)	SIK3 (ENSRBIG00000028314)	PAFAH1B2 (ENSRBIG00000035123) ##22	SIDT2 (ENSRBIG00000042199)	TAGLN (ENSRBIG00000031507)	PCSK7 (ENSRBIG00000034987)	ENSRBIG00000029046	ENSRBIG00000030215	BACE1 (ENSRBIG00000032215)	CEP164 (ENSRBIG00000035201)	ENSRBIG00000044799	DSCAML1 (ENSRBIG00000040460)	FXYD2 (ENSRBIG00000014335)	FXYD6 (ENSRBIG00000030692)	TMPRSS13 (ENSRBIG00000018608)	IL10RA (ENSRBIG00000032855)	SMIM35 (ENSRBIG00000044593)	TMPRSS4 (ENSRBIG00000011072)
Golden snub-nosed monkey	MODERN SPECIES	1321																PAFAH1B2 (ENSRROG00000037522) ##22	SIDT2 (ENSRROG00000040855)	TAGLN (ENSRROG00000000812)	PCSK7 (ENSRROG00000022686)	RNF214 (ENSRROG00000040314)	BACE1 (ENSRROG00000029979)	ENSRROG00000029832	CEP164 (ENSRROG00000033357)	DSCAML1 (ENSRROG00000022038)	ENSRROG00000039048	ENSRROG00000044697	FXYD6 (ENSRROG00000029563)	TMPRSS13 (ENSRROG00000045488)	IL10RA (ENSRROG00000034889)	SMIM35 (ENSRROG00000035711)	TMPRSS4 (ENSRROG00000035579)
Hominoidea	ANCESTRAL SPECIES	1	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Hominidae	ANCESTRAL SPECIES	1	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00910000146918	ENSGT01100000264002	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	8	ENSGT00390000007962	ENSGT00910000146938	ENSGT00870000136493.d.g.b	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00910000146918	ENSGT01100000264002	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Homo/Pan group	ANCESTRAL SPECIES	1	ENSGT00390000007962	ENSGT00910000146938	ENSGT00870000136493.d.g.b	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00910000146918	ENSGT01100000264002	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Pan	ANCESTRAL SPECIES	1	ENSGT00910000146938	ENSGT00870000136493.d.g.b	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00910000148725	ENSGT00390000014500	ENSGT00390000005306.u	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259.e	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00910000146918	ENSGT01100000264002	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Bonobo	MODERN SPECIES	2	ENSPPAG00000038521	RBM7 (ENSPPAG00000027572)	REXO2 (ENSPPAG00000039849)	NXPE1 (ENSPPAG00000039026)	ENSPPAG00000036856	NXPE2 (ENSPPAG00000028189)	CADM1 (ENSPPAG00000036227)	ENSPPAG00000029893	BUD13 (ENSPPAG00000040801)	ZPR1 (ENSPPAG00000035589)	APOA5 (ENSPPAG00000040538)	APOA4 (ENSPPAG00000037193)	APOC3 (ENSPPAG00000016679)	APOA1 (ENSPPAG00000026972)	SIK3 (ENSPPAG00000036163)	PAFAH1B2 (ENSPPAG00000027377) ##22	SIDT2 (ENSPPAG00000029761)	TAGLN (ENSPPAG00000041234)	PCSK7 (ENSPPAG00000039272)	RNF214 (ENSPPAG00000041137)	BACE1 (ENSPPAG00000037875)	ENSPPAG00000031159	CEP164 (ENSPPAG00000032345)	DSCAML1 (ENSPPAG00000039844)	FXYD2 (ENSPPAG00000025991)	FXYD6 (ENSPPAG00000022666)	TMPRSS13 (ENSPPAG00000037455)	IL10RA (ENSPPAG00000032589)	TMPRSS4 (ENSPPAG00000034855)	SCN4B (ENSPPAG00000037758)	SCN2B (ENSPPAG00000031647)
Chimpanzee	MODERN SPECIES	2	ENSPTRG00000044509	RBM7 (ENSPTRG00000004305)	REXO2 (ENSPTRG00000004306)	NXPE1 (ENSPTRG00000004307)	NXPE4 (ENSPTRG00000004308)	NXPE2 (ENSPTRG00000028394)	CADM1 (ENSPTRG00000004310)	ENSPTRG00000051389	BUD13 (ENSPTRG00000004311)	ZPR1 (ENSPTRG00000004312)	APOA5 (ENSPTRG00000004313)	APOA4 (ENSPTRG00000004314)	APOC3 (ENSPTRG00000004315)	APOA1 (ENSPTRG00000004316)	SIK3 (ENSPTRG00000004317)	PAFAH1B2 (ENSPTRG00000004318) ##22	SIDT2 (ENSPTRG00000004319)	TAGLN (ENSPTRG00000004320)	PCSK7 (ENSPTRG00000004321)	RNF214 (ENSPTRG00000004323)	BACE1 (ENSPTRG00000004324)	ENSPTRG00000043667	CEP164 (ENSPTRG00000004325)	ENSPTRG00000047420	DSCAML1 (ENSPTRG00000004326)	FXYD2 (ENSPTRG00000004327)	FXYD6 (ENSPTRG00000004329)	TMPRSS13 (ENSPTRG00000004330)	IL10RA (ENSPTRG00000043823)	SMIM35 (ENSPTRG00000047648)	TMPRSS4 (ENSPTRG00000004332)
Human	MODERN SPECIES	2	NNMT (ENSG00000166741)	C11orf71 (ENSG00000180425)	RBM7 (ENSG00000076053)	REXO2 (ENSG00000076043)	NXPE1 (ENSG00000095110)	NXPE4 (ENSG00000137634)	NXPE2 (ENSG00000204361)	CADM1 (ENSG00000182985)	BUD13 (ENSG00000137656)	ZPR1 (ENSG00000109917)	APOA5 (ENSG00000110243)	APOA4 (ENSG00000110244)	APOC3 (ENSG00000110245)	APOA1 (ENSG00000118137)	SIK3 (ENSG00000160584)	PAFAH1B2 (ENSG00000168092) ##22	SIDT2 (ENSG00000149577)	TAGLN (ENSG00000149591)	PCSK7 (ENSG00000160613)	RNF214 (ENSG00000167257)	BACE1 (ENSG00000186318)	CEP164 (ENSG00000110274)	DSCAML1 (ENSG00000177103)	FXYD2 (ENSG00000137731)	FXYD6-FXYD2 (ENSG00000255245)	FXYD6 (ENSG00000137726)	TMPRSS13 (ENSG00000137747)	IL10RA (ENSG00000110324)	SMIM35 (ENSG00000255274)	TMPRSS4 (ENSG00000137648)	SCN4B (ENSG00000177098)
Gorilla	MODERN SPECIES	2	ENSGGOG00000009932	ENSGGOG00000038884	ENSGGOG00000009941	REXO2 (ENSGGOG00000023267)	NXPE1 (ENSGGOG00000024286)	NXPE4 (ENSGGOG00000008842)	ENSGGOG00000010022	CADM1 (ENSGGOG00000010219)	BUD13 (ENSGGOG00000000662)	ZPR1 (ENSGGOG00000000664)	APOA5 (ENSGGOG00000000666)	APOA4 (ENSGGOG00000028447)	APOC3 (ENSGGOG00000008004)	APOA1 (ENSGGOG00000008006)	SIK3 (ENSGGOG00000011085)	PAFAH1B2 (ENSGGOG00000037923) ##22	SIDT2 (ENSGGOG00000014318)	TAGLN (ENSGGOG00000014333)	PCSK7 (ENSGGOG00000014344)	RNF214 (ENSGGOG00000014362)	BACE1 (ENSGGOG00000014376)	CEP164 (ENSGGOG00000006445)	DSCAML1 (ENSGGOG00000006455)	FXYD2 (ENSGGOG00000027025)	FXYD6 (ENSGGOG00000006473)	TMPRSS13 (ENSGGOG00000002744)	IL10RA (ENSGGOG00000016326)	SMIM35 (ENSGGOG00000036636)	ENSGGOG00000002090	SCN4B (ENSGGOG00000002093)	SCN2B (ENSGGOG00000002096)
Orangutan	MODERN SPECIES	2	NNMT (ENSPPYG00000003892)	ENSPPYG00000003893	RBM7 (ENSPPYG00000003894)	REXO2 (ENSPPYG00000003895)	NXPE1 (ENSPPYG00000003896)	NXPE4 (ENSPPYG00000003897)	NXPE2 (ENSPPYG00000003898)	CADM1 (ENSPPYG00000003899)	BUD13 (ENSPPYG00000003900)	ZPR1 (ENSPPYG00000025914)	APOA5 (ENSPPYG00000031421)	APOA4 (ENSPPYG00000003902)	ENSPPYG00000003903	APOA1 (ENSPPYG00000003904)	SIK3 (ENSPPYG00000003905)	PAFAH1B2 (ENSPPYG00000003907) ##22	SIDT2 (ENSPPYG00000003908)	PCSK7 (ENSPPYG00000003910)	TAGLN (ENSPPYG00000003909)	RNF214 (ENSPPYG00000003911)	BACE1 (ENSPPYG00000003912)	CEP164 (ENSPPYG00000003914)	DSCAML1 (ENSPPYG00000003915)	FXYD2 (ENSPPYG00000003916)	FXYD6 (ENSPPYG00000003918)	TMPRSS13 (ENSPPYG00000003919)	IL10RA (ENSPPYG00000040697)	SMIM35 (ENSPPYG00000037607)	ENSPPYG00000003922	SCN4B (ENSPPYG00000003923)	SCN2B (ENSPPYG00000032928)
Gibbon	MODERN SPECIES	5	NNMT (ENSNLEG00000007321)	ENSNLEG00000029308	RBM7 (ENSNLEG00000029494)	REXO2 (ENSNLEG00000029745)	NXPE1 (ENSNLEG00000007325)	NXPE4 (ENSNLEG00000007326)	NXPE2 (ENSNLEG00000007327)	CADM1 (ENSNLEG00000029493)	BUD13 (ENSNLEG00000007329)	ZPR1 (ENSNLEG00000007330)	APOA5 (ENSNLEG00000007331)	APOA4 (ENSNLEG00000007332)	APOC3 (ENSNLEG00000007334)	APOA1 (ENSNLEG00000007335)	SIK3 (ENSNLEG00000007336)	PAFAH1B2 (ENSNLEG00000032420) ##22	SIDT2 (ENSNLEG00000007338)	TAGLN (ENSNLEG00000007339)	PCSK7 (ENSNLEG00000007340)	RNF214 (ENSNLEG00000007341)	ENSNLEG00000032623	BACE1 (ENSNLEG00000007342)	ENSNLEG00000035040	CEP164 (ENSNLEG00000026957)	DSCAML1 (ENSNLEG00000007345)	FXYD2 (ENSNLEG00000007347)	FXYD6 (ENSNLEG00000007348)	TMPRSS13 (ENSNLEG00000007349)	IL10RA (ENSNLEG00000007350)	SMIM35 (ENSNLEG00000030242)	TMPRSS4 (ENSNLEG00000007351)
Platyrrhini	ANCESTRAL SPECIES	3	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255.o	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c.a.a	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Cebidae	ANCESTRAL SPECIES		ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255.o	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c.a.a	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Cebidae_a	ANCESTRAL SPECIES	22	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255.o	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a.c ##22	ENSGT00390000010091.c	ENSGT00940000155162.c.a.a	ENSGT00940000157676	ENSGT00940000159470	ENSGT00910000146918	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Capuchin	MODERN SPECIES	28	NNMT (ENSCCAG00000019545)	C11orf71 (ENSCCAG00000033433)	RBM7 (ENSCCAG00000036534)	REXO2 (ENSCCAG00000034979)	NXPE1 (ENSCCAG00000032412)	NXPE4 (ENSCCAG00000027643)	NXPE2 (ENSCCAG00000016890)	CADM1 (ENSCCAG00000032479)	BUD13 (ENSCCAG00000024422)	ZPR1 (ENSCCAG00000028716)	APOA5 (ENSCCAG00000033034)	APOA4 (ENSCCAG00000026719)	APOC3 (ENSCCAG00000001237)	APOA1 (ENSCCAG00000024621)	ENSCCAG00000036119	PAFAH1B2 (ENSCCAG00000034687) ##22	SIDT2 (ENSCCAG00000027512)	ENSCCAG00000029473	PCSK7 (ENSCCAG00000036429)	RNF214 (ENSCCAG00000037316)	BACE1 (ENSCCAG00000037820)	ENSCCAG00000025428	CEP164 (ENSCCAG00000033797)	DSCAML1 (ENSCCAG00000031820)	FXYD2 (ENSCCAG00000029437)	FXYD6 (ENSCCAG00000036675)	TMPRSS13 (ENSCCAG00000020234)	IL10RA (ENSCCAG00000028571)	SMIM35 (ENSCCAG00000028208)	TMPRSS4 (ENSCCAG00000034413)	SCN4B (ENSCCAG00000005224)
Bolivian squirrel monkey	MODERN SPECIES	50	NXPE2 (ENSSBOG00000022260)	ENSSBOG00000034681	CADM1 (ENSSBOG00000035201)	ENSSBOG00000034680	BUD13 (ENSSBOG00000033988)	ZPR1 (ENSSBOG00000018045)	APOA5 (ENSSBOG00000034615)	APOA4 (ENSSBOG00000034589)	APOC3 (ENSSBOG00000029645)	APOA1 (ENSSBOG00000027691)	ENSSBOG00000019734	SIK3 (ENSSBOG00000033875)	ENSSBOG00000018305	ENSSBOG00000031628	ENSSBOG00000028394	PAFAH1B2 (ENSSBOG00000031801) ##22	SIDT2 (ENSSBOG00000032213)	ENSSBOG00000024274	PCSK7 (ENSSBOG00000034009)	RNF214 (ENSSBOG00000021520)	ENSSBOG00000014464	BACE1 (ENSSBOG00000035674)	CEP164 (ENSSBOG00000020901)	ENSSBOG00000024881	DSCAML1 (ENSSBOG00000019573)	FXYD2 (ENSSBOG00000033109)	FXYD6 (ENSSBOG00000025645)	TMPRSS13 (ENSSBOG00000031082)	IL10RA (ENSSBOG00000031462)	SMIM35 (ENSSBOG00000025265)	TMPRSS4 (ENSSBOG00000022304)
Marmoset	MODERN SPECIES	2	RBM7 (ENSCJAG00000011949)	ENSCJAG00000084583	REXO2 (ENSCJAG00000012434)	ENSCJAG00000069594	NXPE1 (ENSCJAG00000045094)	NXPE2 (ENSCJAG00000012491)	CADM1 (ENSCJAG00000012501)	BUD13 (ENSCJAG00000012570)	ZPR1 (ENSCJAG00000012583)	APOA5 (ENSCJAG00000012611)	APOA4 (ENSCJAG00000070367)	APOC3 (ENSCJAG00000012639)	APOA1 (ENSCJAG00000012644)	SIK3 (ENSCJAG00000012659)	ENSCJAG00000074301	PAFAH1B2 (ENSCJAG00000012698) ##22	SIDT2 (ENSCJAG00000012713)	TAGLN (ENSCJAG00000012755)	PCSK7 (ENSCJAG00000012763)	RNF214 (ENSCJAG00000012793)	BACE1 (ENSCJAG00000012845)	CEP164 (ENSCJAG00000012899)	DSCAML1 (ENSCJAG00000012950)	ENSCJAG00000042607	FXYD6 (ENSCJAG00000043611)	TMPRSS13 (ENSCJAG00000013052)	IL10RA (ENSCJAG00000013084)	SMIM35 (ENSCJAG00000069762)	TMPRSS4 (ENSCJAG00000013100)	SCN4B (ENSCJAG00000072162)	ENSCJAG00000080624
Mas night monkey	MODERN SPECIES	527	ENSANAG00000031879	ENSANAG00000020834	NXPE1 (ENSANAG00000023027)	NXPE2 (ENSANAG00000022914)	ENSANAG00000006922	CADM1 (ENSANAG00000022822)	BUD13 (ENSANAG00000035220)	ZPR1 (ENSANAG00000026351)	APOA5 (ENSANAG00000030524)	APOA4 (ENSANAG00000033961)	APOC3 (ENSANAG00000033515)	APOA1 (ENSANAG00000034411)	SIK3 (ENSANAG00000037756)	ENSANAG00000025519	ENSANAG00000035938	PAFAH1B2 (ENSANAG00000023275) ##22	SIDT2 (ENSANAG00000031713)	ENSANAG00000038268	PCSK7 (ENSANAG00000035257)	RNF214 (ENSANAG00000023817)	ENSANAG00000033055	BACE1 (ENSANAG00000027782)	CEP164 (ENSANAG00000023776)	DSCAML1 (ENSANAG00000028528)	ENSANAG00000030698	FXYD6 (ENSANAG00000037013)	TMPRSS13 (ENSANAG00000021105)	IL10RA (ENSANAG00000035211)	SMIM35 (ENSANAG00000022850)	TMPRSS4 (ENSANAG00000023662)	SCN4B (ENSANAG00000035259)
Simiiformes	ANCESTRAL SPECIES																	ENSGT00950000183199.a.a.d ##22
Catarrhini	ANCESTRAL SPECIES	111																ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d
Hominoidea	ANCESTRAL SPECIES	16	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.d	ENSGT00940000158684	ENSGT00390000013549.a.b.b.d	ENSGT00390000013549.a.b.b.c	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000163449	ENSGT00940000159951	ENSGT00940000163033.a.b	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106
Hominidae	ANCESTRAL SPECIES	8	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.d	ENSGT00940000158684	ENSGT00390000013549.a.b.b.d	ENSGT00390000013549.a.b.b.c	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000163449	ENSGT00940000159951	ENSGT00940000163033.a.b	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	9	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.d	ENSGT00940000158684	ENSGT00390000013549.a.b.b.d	ENSGT00390000013549.a.b.b.c	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00950000183014.f.a.g.b.a.b.a.b.a	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000163449	ENSGT00940000159951.s	ENSGT00940000159951.t	ENSGT00940000163033.a.b	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012
Homo/Pan group	ANCESTRAL SPECIES	9	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.d	ENSGT00940000158684	ENSGT00390000013549.a.b.b.d	ENSGT00390000013549.a.b.b.c	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00950000183014.f.a.g.b.a.b.a.b.a	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000163449	ENSGT00940000159951.s	ENSGT00940000159951.t	ENSGT00940000163033.a.b	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012
Pan	ANCESTRAL SPECIES	6	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.d	ENSGT00940000158684	ENSGT00390000013549.a.b.b.d	ENSGT00390000013549.a.b.b.c	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00950000183014.f.a.g.b.a.b.a.b.a	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000163449	ENSGT00940000159951.s	ENSGT00940000163033.a.b	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000165012	ENSGT00940000166106	ENSGT00390000015719.d
Bonobo	MODERN SPECIES	369	PRDX4 (ENSPPAG00000038998)	ACOT9 (ENSPPAG00000037237)	SAT1 (ENSPPAG00000035932)	APOO (ENSPPAG00000033503)	CXorf58 (ENSPPAG00000041195)	KLHL15 (ENSPPAG00000040506)	EIF2S3 (ENSPPAG00000035572)	ZFX (ENSPPAG00000029493)	SUPT20HL1 (ENSPPAG00000036411)	ENSPPAG00000017273	PDK3 (ENSPPAG00000043604)	PCYT1B (ENSPPAG00000028021)	POLA1 (ENSPPAG00000042971)	ENSPPAG00000015413	ENSPPAG00000018949	ENSPPAG00000033295 ##22	ENSPPAG00000018404	MAGEB18 (ENSPPAG00000015746)	MAGEB6B (ENSPPAG00000005092)	MAGEB5 (ENSPPAG00000017989)	ENSPPAG00000041187	PPP4R3C (ENSPPAG00000009146)	DCAF8L2 (ENSPPAG00000005336)	MAGEB10 (ENSPPAG00000018462)	ENSPPAG00000033994	DCAF8L1 (ENSPPAG00000037430)	IL1RAPL1 (ENSPPAG00000039128)	MAGEB2 (ENSPPAG00000002810)	MAGEB4 (ENSPPAG00000010695)	MAGEB1 (ENSPPAG00000003758)	NR0B1 (ENSPPAG00000025394)
Chimpanzee	MODERN SPECIES	972	PRDX4 (ENSPTRG00000049325)	ACOT9 (ENSPTRG00000021740)	ENSPTRG00000049093	APOO (ENSPTRG00000021742)	CXorf58 (ENSPTRG00000048338)	KLHL15 (ENSPTRG00000021744)	ENSPTRG00000050342	ZFX (ENSPTRG00000021747)	SUPT20HL2 (ENSPTRG00000049617)	SUPT20HL1 (ENSPTRG00000045217)	PDK3 (ENSPTRG00000021750)	PCYT1B (ENSPTRG00000021752)	POLA1 (ENSPTRG00000021753)	ENSPTRG00000041347	ARX (ENSPTRG00000045701)	ENSPTRG00000052410 ##22	ENSPTRG00000045518	ENSPTRG00000049505	MAGEB18 (ENSPTRG00000021756)	ENSPTRG00000040148	ENSPTRG00000051684	PPP4R3C (ENSPTRG00000048068)	DCAF8L2 (ENSPTRG00000041198)	MAGEB10 (ENSPTRG00000021760)	ENSPTRG00000046700	DCAF8L1 (ENSPTRG00000021759)	IL1RAPL1 (ENSPTRG00000021762)	MAGEB2 (ENSPTRG00000021763)	MAGEB4 (ENSPTRG00000043875)	MAGEB1 (ENSPTRG00000034342)	NR0B1 (ENSPTRG00000021767)
Gorilla	MODERN SPECIES	523	PTCHD1 (ENSGGOG00000044059)	PRDX4 (ENSGGOG00000026790)	ACOT9 (ENSGGOG00000015401)	SAT1 (ENSGGOG00000027873)	APOO (ENSGGOG00000001200)	CXorf58 (ENSGGOG00000016257)	KLHL15 (ENSGGOG00000028200)	EIF2S3 (ENSGGOG00000024609)	ZFX (ENSGGOG00000004053)	SUPT20HL2 (ENSGGOG00000022110)	PDK3 (ENSGGOG00000006157)	PCYT1B (ENSGGOG00000002402)	POLA1 (ENSGGOG00000016072)	ENSGGOG00000022441	ARX (ENSGGOG00000023361)	ENSGGOG00000025838 ##22	METTL1 (ENSGGOG00000023724)	ENSGGOG00000028052	MAGEB18 (ENSGGOG00000004000)	MAGEB6 (ENSGGOG00000024283)	MAGEB5 (ENSGGOG00000009421)	ENSGGOG00000042128	PPP4R3C (ENSGGOG00000024821)	DCAF8L2 (ENSGGOG00000026780)	MAGEB10 (ENSGGOG00000011253)	ENSGGOG00000039051	DCAF8L1 (ENSGGOG00000015073)	IL1RAPL1 (ENSGGOG00000003017)	MAGEB2 (ENSGGOG00000012305)	MAGEB3 (ENSGGOG00000005399)	MAGEB4 (ENSGGOG00000040935)
Orangutan	MODERN SPECIES	242	PTCHD1 (ENSPPYG00000020187)	ENSPPYG00000020188	ACOT9 (ENSPPYG00000020189)	SAT1 (ENSPPYG00000020190)	APOO (ENSPPYG00000020191)	CXorf58 (ENSPPYG00000020192)	KLHL15 (ENSPPYG00000034438)	EIF2S3 (ENSPPYG00000020194)	ZFX (ENSPPYG00000020195)	ENSPPYG00000040833	SUPT20HL1 (ENSPPYG00000040934)	PDK3 (ENSPPYG00000020198)	PCYT1B (ENSPPYG00000020199)	POLA1 (ENSPPYG00000020200)	ARX (ENSPPYG00000035499)	ENSPPYG00000033798 ##22	MAGEB18 (ENSPPYG00000020203)	MAGEB5 (ENSPPYG00000020205)	ENSPPYG00000020206	ENSPPYG00000002141	DCAF8L2 (ENSPPYG00000036385)	MAGEB10 (ENSPPYG00000020209)	DCAF8L1 (ENSPPYG00000033439)	IL1RAPL1 (ENSPPYG00000020212)	MAGEB2 (ENSPPYG00000020213)	MAGEB3 (ENSPPYG00000020214)	MAGEB4 (ENSPPYG00000020215)	MAGEB1 (ENSPPYG00000020915)	NR0B1 (ENSPPYG00000020216)	TASL (ENSPPYG00000020217)	ENSPPYG00000030686
Cercopithecidae	ANCESTRAL SPECIES	27	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.c.a.b	ENSGT00940000158684	ENSGT00390000013549.a.b.b	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00940000167876	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106	ENSGT00390000015719.d	ENSGT00390000011425.B	ENSGT00940000153096.b.d.fb.b.a.a	ENSGT01000000214434.B.b.e.a.o.a	ENSGT00940000159499	ENSGT00940000165498
Cercopithecinae	ANCESTRAL SPECIES	13	ENSGT00940000157080	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.c.a.b	ENSGT00940000158684	ENSGT00390000013549.a.b.b	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00940000167876	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106	ENSGT00390000015719.d	ENSGT00940000154815.a.x.b	ENSGT00390000011425.B	ENSGT00940000153096.b.d.fb.b.a.a	ENSGT01000000214434.B.b.e.a.o.a	ENSGT00940000159499
Cercopithecinae_a	ANCESTRAL SPECIES	11	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.c.a.b	ENSGT00940000158684	ENSGT00390000013549.a.b.b.f	ENSGT00390000013549.a.b.b.e	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00940000167876	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106	ENSGT00390000015719.d	ENSGT00940000154815.a.x.b	ENSGT00390000011425.B	ENSGT00940000153096.b.d.fb.b.a.a	ENSGT01000000214434.B.b.e.a.o.a	ENSGT00940000159499
Cercopithecinae_b	ANCESTRAL SPECIES	35	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b.a	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.c.a.b	ENSGT00940000158684	ENSGT00390000013549.a.b.b.f	ENSGT00390000013549.a.b.b.e	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00950000183087.A.a.b.b.g.f.c.b	ENSGT00940000163449	ENSGT00940000159951.u	ENSGT00940000159951.v	ENSGT00940000163033.a.b	ENSGT00940000155067.a.a.b	ENSGT00940000163797.b	ENSGT00940000167876	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000155485	ENSGT00940000164194	ENSGT00940000165012	ENSGT00940000166106
Cercopithecinae_d	ANCESTRAL SPECIES	51	ENSGT00940000153430.a.a	ENSGT00390000005330	ENSGT00950000183121.b.b.b.b	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.a.b.b.a	ENSGT00530000063666.b.h.b	ENSGT00510000048637	ENSGT00940000159116	ENSGT00550000074801.h.c.a.b	ENSGT00940000158684	ENSGT00390000013549.a.b.b.f	ENSGT00390000013549.a.b.b.e	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00390000017840.d	ENSGT00940000159951.u	ENSGT00940000159951.v	ENSGT00940000163033.a.b	ENSGT00940000155067.a.a.b	ENSGT00950000182900.D.d.b.a	ENSGT00730000111329.k.b.b	ENSGT00390000018199.b.b.b	ENSGT01090000260082.d.a.b.n	ENSGT01090000260076.b.b	ENSGT00940000165012	ENSGT00390000015719.d	ENSGT00940000154815.a.x.b	ENSGT00390000011425.B	ENSGT00940000153096.b.d.fb.b.a.a
Drill	MODERN SPECIES	674															ARX (ENSMLEG00000022170)	ENSMLEG00000032124 ##22
Sooty mangabey	MODERN SPECIES	448	PTCHD1 (ENSCATG00000018108)	PRDX4 (ENSCATG00000040922)	ACOT9 (ENSCATG00000031637)	SAT1 (ENSCATG00000044813)	ENSCATG00000032289	APOO (ENSCATG00000031869)	CXorf58 (ENSCATG00000031616)	KLHL15 (ENSCATG00000030150)	ENSCATG00000037374	ZFX (ENSCATG00000041857)	ENSCATG00000014423	PDK3 (ENSCATG00000037824)	PCYT1B (ENSCATG00000015494)	POLA1 (ENSCATG00000039397)	ARX (ENSCATG00000032913)	ENSCATG00000037255 ##22	ENSCATG00000018666	ENSCATG00000016388	ENSCATG00000042070	MAGEB5 (ENSCATG00000041585)	ENSCATG00000037231	ENSCATG00000036296	PPP4R3C (ENSCATG00000035760)	ENSCATG00000042837	ENSCATG00000039144	DCAF8L1 (ENSCATG00000038983)	ENSCATG00000030447	ENSCATG00000022455	IL1RAPL1 (ENSCATG00000018262)	MAGEB4 (ENSCATG00000035812)	NR0B1 (ENSCATG00000017290)
Macaca	ANCESTRAL SPECIES	13					ENSGT00940000165583	ENSGT00390000005569.x.b.q.a	ENSGT00940000158684	ENSGT00440000038159.p.a.e.b	ENSGT00530000064242.b	ENSGT00390000013549.a.b.b.f	ENSGT00390000013549.a.b.b.e	ENSGT01030000234646.B.a.b	ENSGT00940000156040	ENSGT00550000074891	ENSGT00940000160633	ENSGT00950000183199.a.a.d ##22	ENSGT00950000183087.A.a.b.b.g.f.c.b	ENSGT00940000163449	ENSGT00940000159951.u	ENSGT00940000159951.v	ENSGT00940000163033.a.b	ENSGT00940000155067.a.a.b	ENSGT00390000018199.b.b.b	ENSGT00950000182900.D.d.b.b	ENSGT00940000163797.b	ENSGT00940000167876	ENSGT00910000146715	ENSGT00950000182900.D.d.b.a	ENSGT01090000260076.b.b	ENSGT00940000165012	ENSGT00940000166106
Pig-tailed macaque	MODERN SPECIES	549	PTCHD1 (ENSMNEG00000031256)	PRDX4 (ENSMNEG00000030258)	ACOT9 (ENSMNEG00000034251)	SAT1 (ENSMNEG00000028507)	ENSMNEG00000042646	APOO (ENSMNEG00000021703)	CXorf58 (ENSMNEG00000045055)	KLHL15 (ENSMNEG00000006144)	ENSMNEG00000031395	ZFX (ENSMNEG00000045098)	ENSMNEG00000001268	PDK3 (ENSMNEG00000044294)	PCYT1B (ENSMNEG00000028533)	POLA1 (ENSMNEG00000031890)	ARX (ENSMNEG00000041141)	ENSMNEG00000044162 ##22	ENSMNEG00000007228
Macaca_a	ANCESTRAL SPECIES																	ENSGT00950000183199.a.a.d ##22
Crab-eating macaque	MODERN SPECIES	175	DDX53 (ENSMFAG00000063689)	PTCHD1 (ENSMFAG00000056214)	PRDX4 (ENSMFAG00000036346)	ACOT9 (ENSMFAG00000041858)	APOO (ENSMFAG00000000489)	CXorf58 (ENSMFAG00000042561)	KLHL15 (ENSMFAG00000063807)	ENSMFAG00000031284	ZFX (ENSMFAG00000031301)	ENSMFAG00000030830	ENSMFAG00000031941	ENSMFAG00000023565	PDK3 (ENSMFAG00000043413)	PCYT1B (ENSMFAG00000002678)	POLA1 (ENSMFAG00000001338)	ENSMFAG00000043858 ##22	ENSMFAG00000048335	MAGEB18 (ENSMFAG00000057172)	ENSMFAG00000036878	PPP4R3C (ENSMFAG00000052280)	ENSMFAG00000062057	ENSMFAG00000003671	DCAF8L2 (ENSMFAG00000052683)	MAGEB10 (ENSMFAG00000049899)	ENSMFAG00000061844	ENSMFAG00000031581	DCAF8L1 (ENSMFAG00000037190)	ENSMFAG00000048620	IL1RAPL1 (ENSMFAG00000046382)	ENSMFAG00000048258	ENSMFAG00000047266
Euarchontoglires_A	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Tree shrew	MODERN SPECIES	3543																PAFAH1B2 (ENSTBEG00000009730) ##22	SIDT2 (ENSTBEG00000009798)
Glires	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Rodentia	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Rodentia_B	ANCESTRAL SPECIES	23	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Myomorpha	ANCESTRAL SPECIES	23	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Muroidea	ANCESTRAL SPECIES	29	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Muroidea_A	ANCESTRAL SPECIES	6	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Northern American deer mouse	MODERN SPECIES	20	Rexo2 (ENSPEMG00000001421)	ENSPEMG00000028974	Nxpe4 (ENSPEMG00000008500)	Nxpe2 (ENSPEMG00000013012)	Cadm1 (ENSPEMG00000001825)	ENSPEMG00000014812	4931429L15Rik (ENSPEMG00000013164)	Bud13 (ENSPEMG00000016113)	ENSPEMG00000010769	Apoa5 (ENSPEMG00000008037)	ENSPEMG00000025005	Apoa4 (ENSPEMG00000015480)	Apoc3 (ENSPEMG00000011253)	Apoa1 (ENSPEMG00000011979)	Sik3 (ENSPEMG00000006295)	Pafah1b2 (ENSPEMG00000027983) ##22	Sidt2 (ENSPEMG00000021149)	Tagln (ENSPEMG00000022640)	Pcsk7 (ENSPEMG00000020789)	Rnf214 (ENSPEMG00000023061)	Bace1 (ENSPEMG00000021179)	Cep164 (ENSPEMG00000021141)	Dscaml1 (ENSPEMG00000021930)	Fxyd2 (ENSPEMG00000020613)	Fxyd6 (ENSPEMG00000025301)	Tmprss13 (ENSPEMG00000016764)	Il10ra (ENSPEMG00000026837)	Smim35 (ENSPEMG00000018417)	Tmprss4 (ENSPEMG00000020454)	Scn4b (ENSPEMG00000030356)	Scn2b (ENSPEMG00000011352)
Prairie vole	MODERN SPECIES	13	Nnmt (ENSMOCG00000020571)	Rbm7 (ENSMOCG00000009674)	Rexo2 (ENSMOCG00000009016)	Nxpe4 (ENSMOCG00000020704)	ENSMOCG00000009738	ENSMOCG00000015214	Cadm1 (ENSMOCG00000012493)	4931429L15Rik (ENSMOCG00000016196)	Bud13 (ENSMOCG00000020780)	Zpr1 (ENSMOCG00000015722)	Apoa5 (ENSMOCG00000012382)	Apoa4 (ENSMOCG00000008908)	ENSMOCG00000008019	Apoa1 (ENSMOCG00000017674)	Sik3 (ENSMOCG00000014581)	Pafah1b2 (ENSMOCG00000011370) ##22	Sidt2 (ENSMOCG00000004336)	ENSMOCG00000014927	Pcsk7 (ENSMOCG00000013874)	Rnf214 (ENSMOCG00000019713)	Bace1 (ENSMOCG00000011148)	Cep164 (ENSMOCG00000005762)	Dscaml1 (ENSMOCG00000000708)	Fxyd2 (ENSMOCG00000000559)	Fxyd6 (ENSMOCG00000021955)	Tmprss13 (ENSMOCG00000011469)	Il10ra (ENSMOCG00000006059)	Smim35 (ENSMOCG00000004113)	Tmprss4 (ENSMOCG00000018074)	Scn4b (ENSMOCG00000011126)	Scn2b (ENSMOCG00000004941)
Cricetinae	ANCESTRAL SPECIES	6	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	284	Gm5617 (ENSCGRG00001001466)	Rbm7 (ENSCGRG00001019236)	ENSCGRG00001019814	ENSCGRG00001022529	Nxpe4 (ENSCGRG00001011592)	ENSCGRG00001013462	Cadm1 (ENSCGRG00001023561)	ENSCGRG00001004852	Bud13 (ENSCGRG00001019626)	Zpr1 (ENSCGRG00001013967)	Apoa5 (ENSCGRG00001024502)	Apoa4 (ENSCGRG00001024960)	Apoc3 (ENSCGRG00001005242)	Apoa1 (ENSCGRG00001024204)	Sik3 (ENSCGRG00001003605)	ENSCGRG00001018542 ##22	Sidt2 (ENSCGRG00001019094)	Tagln (ENSCGRG00001023407)	Pcsk7 (ENSCGRG00001003140)	Rnf214 (ENSCGRG00001022173)	Bace1 (ENSCGRG00001020465)	Cep164 (ENSCGRG00001000709)	Dscaml1 (ENSCGRG00001020540)	Fxyd2 (ENSCGRG00001018372)	Fxyd6 (ENSCGRG00001012383)	Tmprss13 (ENSCGRG00001014487)	Il10ra (ENSCGRG00001007663)	Smim35 (ENSCGRG00001005398)	Tmprss4 (ENSCGRG00001023270)	Scn4b (ENSCGRG00001023168)	Scn2b (ENSCGRG00001024766)
Chinese hamster chok1gshd	MODERN SPECIES	284	Ddx43 (ENSCGRG00001001145)	Cgas (ENSCGRG00001023109)	ENSCGRG00001011641	Mto1 (ENSCGRG00001022063)	EEF1A1 (ENSCGRG00001000419)	Slc17a5 (ENSCGRG00001023838)	Cd109 (ENSCGRG00001017958)	Col12a1 (ENSCGRG00001000858)	ENSCGRG00001017831	Tmem30a (ENSCGRG00001015376)	Filip1 (ENSCGRG00001013402)	ENSCGRG00001001212	Senp6 (ENSCGRG00001014659)	Myo6 (ENSCGRG00001024878)	Impg1 (ENSCGRG00001012701)	ENSCGRG00001004664 ##22	ENSCGRG00001011114	Htr1b (ENSCGRG00001012010)	Mei4 (ENSCGRG00001016059)	Irak1bp1 (ENSCGRG00001021968)	Phip (ENSCGRG00001003114)	Hmgn3 (ENSCGRG00001019763)	Lca5 (ENSCGRG00001023378)	ENSCGRG00001010964	Sh3bgrl2 (ENSCGRG00001021661)	ELOVL4 (ENSCGRG00001020278)	Ttk (ENSCGRG00001015565)	Bckdhb (ENSCGRG00001017976)	Tent5a (ENSCGRG00001015453)	Ibtk (ENSCGRG00001007460)	Tpbg (ENSCGRG00001001413)
Golden Hamster	MODERN SPECIES	635	Zbtb16 (ENSMAUG00000010982)	Nnmt (ENSMAUG00000018665)	ENSMAUG00000017938	Rexo2 (ENSMAUG00000014576)	Nxpe4 (ENSMAUG00000020773)	ENSMAUG00000010705	Cadm1 (ENSMAUG00000003636)	ENSMAUG00000021484	Bud13 (ENSMAUG00000008604)	Zpr1 (ENSMAUG00000014185)	Apoa5 (ENSMAUG00000021305)	Apoa4 (ENSMAUG00000018590)	ENSMAUG00000020016	Apoa1 (ENSMAUG00000018114)	Sik3 (ENSMAUG00000013720)	Pafah1b2 (ENSMAUG00000020507) ##22	Sidt2 (ENSMAUG00000014540)	Tagln (ENSMAUG00000020924)	Pcsk7 (ENSMAUG00000016951)	ENSMAUG00000002432	ENSMAUG00000003202	Cep164 (ENSMAUG00000002307)	Dscaml1 (ENSMAUG00000012423)	Fxyd2 (ENSMAUG00000018126)	Fxyd6 (ENSMAUG00000015946)	Tmprss13 (ENSMAUG00000012207)	Il10ra (ENSMAUG00000019337)	Smim35 (ENSMAUG00000012776)	Tmprss4 (ENSMAUG00000002659)	Scn4b (ENSMAUG00000001092)	Scn2b (ENSMAUG00000005867)
Murinae	ANCESTRAL SPECIES	3	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mus	ANCESTRAL SPECIES	4	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mus_A	ANCESTRAL SPECIES	4	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mus_B	ANCESTRAL SPECIES	3	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Mouse	MODERN SPECIES	18	Nnmt (ENSMUSG00000032271)	Gm5617 (ENSMUSG00000042293)	Rbm7 (ENSMUSG00000042396)	Rexo2 (ENSMUSG00000032026)	Nxpe2 (ENSMUSG00000032028)	Nxpe4 (ENSMUSG00000044229)	Cadm1 (ENSMUSG00000032076)	4931429L15Rik (ENSMUSG00000056617)	Bud13 (ENSMUSG00000032077)	Zpr1 (ENSMUSG00000032078)	Apoa5 (ENSMUSG00000032079)	Apoa4 (ENSMUSG00000032080)	Apoc3 (ENSMUSG00000032081)	Apoa1 (ENSMUSG00000032083)	Sik3 (ENSMUSG00000034135)	Pafah1b2 (ENSMUSG00000003131) ##22	Sidt2 (ENSMUSG00000034908)	Tagln (ENSMUSG00000032085)	Pcsk7 (ENSMUSG00000035382)	Rnf214 (ENSMUSG00000042790)	Bace1 (ENSMUSG00000032086)	Cep164 (ENSMUSG00000043987)	Dscaml1 (ENSMUSG00000032087)	Fxyd2 (ENSMUSG00000059412)	Fxyd6 (ENSMUSG00000066705)	Tmprss13 (ENSMUSG00000037129)	Il10ra (ENSMUSG00000032089)	Smim35 (ENSMUSG00000091996)	Tmprss4 (ENSMUSG00000032091)	Scn4b (ENSMUSG00000046480)	Scn2b (ENSMUSG00000070304)
Mus_C	ANCESTRAL SPECIES	8	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
spretus	MODERN SPECIES	18	Gm5617 (MGP_SPRETEiJ_G0033307)	Rbm7 (MGP_SPRETEiJ_G0033306)	Rexo2 (MGP_SPRETEiJ_G0033305)	Nxpe4 (MGP_SPRETEiJ_G0033304)	Nxpe2 (MGP_SPRETEiJ_G0033303)	Cadm1 (MGP_SPRETEiJ_G0033302)	MGP_SPRETEiJ_G0033301	4931429L15Rik (MGP_SPRETEiJ_G0033300)	Bud13 (MGP_SPRETEiJ_G0033299)	Zpr1 (MGP_SPRETEiJ_G0033298)	Apoa5 (MGP_SPRETEiJ_G0033297)	Apoa4 (MGP_SPRETEiJ_G0033296)	MGP_SPRETEiJ_G0033295	Apoa1 (MGP_SPRETEiJ_G0033294)	Sik3 (MGP_SPRETEiJ_G0033293)	Pafah1b2 (MGP_SPRETEiJ_G0033292) ##22	Sidt2 (MGP_SPRETEiJ_G0033291)	Tagln (MGP_SPRETEiJ_G0033290)	Pcsk7 (MGP_SPRETEiJ_G0033289)	Rnf214 (MGP_SPRETEiJ_G0033288)	Bace1 (MGP_SPRETEiJ_G0033287)	MGP_SPRETEiJ_G0033286	Dscaml1 (MGP_SPRETEiJ_G0033285)	Fxyd2 (MGP_SPRETEiJ_G0033284)	Fxyd6 (MGP_SPRETEiJ_G0033283)	Tmprss13 (MGP_SPRETEiJ_G0033282)	Il10ra (MGP_SPRETEiJ_G0033281)	Smim35 (MGP_SPRETEiJ_G0033280)	Tmprss4 (MGP_SPRETEiJ_G0033279)	Scn4b (MGP_SPRETEiJ_G0033278)	Scn2b (MGP_SPRETEiJ_G0033277)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3372	Nxpe2 (ENSMSIG00000012518)	ENSMSIG00000012512	Cadm1 (ENSMSIG00000011500)	ENSMSIG00000011463	ENSMSIG00000011446	4931429L15Rik (ENSMSIG00000011321)	Bud13 (ENSMSIG00000011279)	Zpr1 (ENSMSIG00000011232)	Apoa5 (ENSMSIG00000011204)	ENSMSIG00000011188	Apoa4 (ENSMSIG00000011179)	Apoc3 (ENSMSIG00000011168)	ENSMSIG00000011165	Apoa1 (ENSMSIG00000011153)	Sik3 (ENSMSIG00000011054)	ENSMSIG00000011027 ##22	Sidt2 (ENSMSIG00000010816)	Tagln (ENSMSIG00000010804)	Pcsk7 (ENSMSIG00000010764)	Rnf214 (ENSMSIG00000010654)	Bace1 (ENSMSIG00000010582)	Cep164 (ENSMSIG00000009951)	Dscaml1 (ENSMSIG00000009844)	ENSMSIG00000009773	ENSMSIG00000009742	Tmprss13 (ENSMSIG00000009716)	Il10ra (ENSMSIG00000009694)	Smim35 (ENSMSIG00000009683)	Tmprss4 (ENSMSIG00000009658)	Scn4b (ENSMSIG00000009647)	Scn2b (ENSMSIG00000009637)
Steppe mouse	MODERN SPECIES	2474																ENSMSIG00000026750 ##22	ENSMSIG00000026759
Ryukyu mouse	MODERN SPECIES	18	Gm5617 (MGP_CAROLIEiJ_G0032168)	Rbm7 (MGP_CAROLIEiJ_G0032167)	Rexo2 (MGP_CAROLIEiJ_G0032166)	MGP_CAROLIEiJ_G0032165	Nxpe4 (MGP_CAROLIEiJ_G0032164)	Nxpe2 (MGP_CAROLIEiJ_G0032163)	Cadm1 (MGP_CAROLIEiJ_G0032162)	4931429L15Rik (MGP_CAROLIEiJ_G0032161)	Bud13 (MGP_CAROLIEiJ_G0032160)	Zpr1 (MGP_CAROLIEiJ_G0032159)	Apoa5 (MGP_CAROLIEiJ_G0032158)	Apoa4 (MGP_CAROLIEiJ_G0032157)	Apoc3 (MGP_CAROLIEiJ_G0032156)	Apoa1 (MGP_CAROLIEiJ_G0032155)	Sik3 (MGP_CAROLIEiJ_G0032154)	Pafah1b2 (MGP_CAROLIEiJ_G0032153) ##22	Sidt2 (MGP_CAROLIEiJ_G0032152)	Tagln (MGP_CAROLIEiJ_G0032151)	Pcsk7 (MGP_CAROLIEiJ_G0032150)	Rnf214 (MGP_CAROLIEiJ_G0032149)	Bace1 (MGP_CAROLIEiJ_G0032148)	MGP_CAROLIEiJ_G0032147	Dscaml1 (MGP_CAROLIEiJ_G0032146)	Fxyd2 (MGP_CAROLIEiJ_G0032145)	Fxyd6 (MGP_CAROLIEiJ_G0032144)	Tmprss13 (MGP_CAROLIEiJ_G0032143)	Il10ra (MGP_CAROLIEiJ_G0032142)	Smim35 (MGP_CAROLIEiJ_G0032141)	Tmprss4 (MGP_CAROLIEiJ_G0032140)	Scn4b (MGP_CAROLIEiJ_G0032139)	Scn2b (MGP_CAROLIEiJ_G0032138)
Shrew mouse	MODERN SPECIES	1	Zbtb16 (MGP_PahariEiJ_G0015038)	Nnmt (MGP_PahariEiJ_G0015037)	Gm5617 (MGP_PahariEiJ_G0015036)	Rbm7 (MGP_PahariEiJ_G0015035)	Rexo2 (MGP_PahariEiJ_G0015034)	Nxpe2 (MGP_PahariEiJ_G0015033)	Cadm1 (MGP_PahariEiJ_G0015032)	4931429L15Rik (MGP_PahariEiJ_G0015031)	MGP_PahariEiJ_G0015030	Zpr1 (MGP_PahariEiJ_G0015029)	Apoa5 (MGP_PahariEiJ_G0015028)	Apoa4 (MGP_PahariEiJ_G0015027)	Apoc3 (MGP_PahariEiJ_G0015026)	Apoa1 (MGP_PahariEiJ_G0015025)	Sik3 (MGP_PahariEiJ_G0015024)	MGP_PahariEiJ_G0015023 ##22	Sidt2 (MGP_PahariEiJ_G0015022)	Tagln (MGP_PahariEiJ_G0015021)	MGP_PahariEiJ_G0015020	Rnf214 (MGP_PahariEiJ_G0015019)	Bace1 (MGP_PahariEiJ_G0015018)	MGP_PahariEiJ_G0015017	Dscaml1 (MGP_PahariEiJ_G0015016)	Fxyd2 (MGP_PahariEiJ_G0015015)	Fxyd6 (MGP_PahariEiJ_G0015014)	Tmprss13 (MGP_PahariEiJ_G0015013)	Il10ra (MGP_PahariEiJ_G0015012)	Smim35 (MGP_PahariEiJ_G0015011)	Tmprss4 (MGP_PahariEiJ_G0015010)	Scn4b (MGP_PahariEiJ_G0015009)	Scn2b (MGP_PahariEiJ_G0015008)
Rat	MODERN SPECIES	18	Nxpe4 (ENSRNOG00000070472)	Nxpe2 (ENSRNOG00000027847)	Cadm1 (ENSRNOG00000018778)	AC135409.1 (ENSRNOG00000038864)	LOC500990 (ENSRNOG00000038867)	Bud13 (ENSRNOG00000018665)	Zpr1 (ENSRNOG00000018481)	Apoa5 (ENSRNOG00000018436)	AABR07073400.1 (ENSRNOG00000059084)	Apoa4 (ENSRNOG00000055909)	Apoc3 (ENSRNOG00000047503)	Apoa1 (ENSRNOG00000045679)	ENSRNOG00000064478	Sik3 (ENSRNOG00000045931)	ENSRNOG00000067804	Pafah1b2 (ENSRNOG00000057102) ##22	Sidt2 (ENSRNOG00000017871)	Tagln (ENSRNOG00000017628)	Pcsk7 (ENSRNOG00000017478)	Rnf214 (ENSRNOG00000017151)	Bace1 (ENSRNOG00000016847)	Cep164 (ENSRNOG00000029826)	Dscaml1 (ENSRNOG00000016502)	Fxyd2 (ENSRNOG00000016469)	Fxyd6 (ENSRNOG00000016412)	Tmprss13 (ENSRNOG00000016397)	Il10ra (ENSRNOG00000016308)	Tmprss4 (ENSRNOG00000026650)	Scn4b (ENSRNOG00000026679)	Scn2b (ENSRNOG00000063505)	Jaml (ENSRNOG00000026702)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1556					Nxpe2 (ENSNGAG00000000466)	Cadm1 (ENSNGAG00000016838)	Bud13 (ENSNGAG00000015401)	Zpr1 (ENSNGAG00000017884)	Apoa5 (ENSNGAG00000018712)	Apoa4 (ENSNGAG00000018081)	Apoc3 (ENSNGAG00000020371)	Apoa1 (ENSNGAG00000019547)	ENSNGAG00000016074	ENSNGAG00000015826	Sik3 (ENSNGAG00000007065)	Pafah1b2 (ENSNGAG00000021011) ##22	Sidt2 (ENSNGAG00000016257)	Tagln (ENSNGAG00000011945)	Pcsk7 (ENSNGAG00000000868)	Rnf214 (ENSNGAG00000015039)	Bace1 (ENSNGAG00000019368)	Cep164 (ENSNGAG00000013620)	Dscaml1 (ENSNGAG00000011174)	Fxyd2 (ENSNGAG00000004961)	Fxyd6 (ENSNGAG00000003475)	Tmprss13 (ENSNGAG00000014237)	Il10ra (ENSNGAG00000010496)	Smim35 (ENSNGAG00000012139)	Tmprss4 (ENSNGAG00000019991)	Scn4b (ENSNGAG00000015874)	Scn2b (ENSNGAG00000013030)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	132	Zbtb16 (ENSJJAG00000019821)	Nnmt (ENSJJAG00000017355)	ENSJJAG00000016540	ENSJJAG00000013710	Nxpe4 (ENSJJAG00000010843)	ENSJJAG00000003168	Cadm1 (ENSJJAG00000018197)	ENSJJAG00000011793	Bud13 (ENSJJAG00000010737)	Zpr1 (ENSJJAG00000019581)	Apoa5 (ENSJJAG00000017262)	Apoa4 (ENSJJAG00000016525)	Apoc3 (ENSJJAG00000013535)	Apoa1 (ENSJJAG00000013728)	Sik3 (ENSJJAG00000019134)	ENSJJAG00000018625 ##22	Sidt2 (ENSJJAG00000016500)	Tagln (ENSJJAG00000008327)	Pcsk7 (ENSJJAG00000020663)	Rnf214 (ENSJJAG00000004332)
Lesser Egyptian jerboa	MODERN SPECIES	145	Patl1 (ENSJJAG00000010135)	Osbp (ENSJJAG00000011540)	ENSJJAG00000013541	Or5a1 (ENSJJAG00000013517)	Or5an6 (ENSJJAG00000020080)	ENSJJAG00000020555	Fam111a (ENSJJAG00000019437)	ENSJJAG00000013203	Glyat (ENSJJAG00000019839)	Keg1 (ENSJJAG00000020886)	Cntf (ENSJJAG00000021211)	Zfp91 (ENSJJAG00000021920)	Lpxn (ENSJJAG00000023492)	ENSJJAG00000000656	ENSJJAG00000003282	ENSJJAG00000009975 ##22	ENSJJAG00000021964	Or9q1 (ENSJJAG00000013888)	ENSJJAG00000013959	Ctnnd1 (ENSJJAG00000010482)	Btbd18 (ENSJJAG00000019048)	ENSJJAG00000019325	Tmx2 (ENSJJAG00000020541)	Med19 (ENSJJAG00000022130)	Zdhhc5 (ENSJJAG00000023243)	Clp1 (ENSJJAG00000023691)	Ypel4 (ENSJJAG00000011281)	Serping1 (ENSJJAG00000017496)	Ube2l6 (ENSJJAG00000017811)	ENSJJAG00000017849	Timm10 (ENSJJAG00000018058)
Kangaroo rat	MODERN SPECIES	329	Htr3a (ENSDORG00000014030)	Zbtb16 (ENSDORG00000011901)	Nnmt (ENSDORG00000001312)	Rbm7 (ENSDORG00000029149)	Rexo2 (ENSDORG00000011255)	Nxpe4 (ENSDORG00000002930)	Nxpe2 (ENSDORG00000011862)	Cadm1 (ENSDORG00000007798)	Bud13 (ENSDORG00000012405)	Zpr1 (ENSDORG00000012404)	Apoa5 (ENSDORG00000012403)	Apoa4 (ENSDORG00000028525)	ENSDORG00000012402	Apoa1 (ENSDORG00000012400)	Sik3 (ENSDORG00000015104)	Pafah1b2 (ENSDORG00000026379) ##22	Sidt2 (ENSDORG00000011276)	Tagln (ENSDORG00000011278)	Pcsk7 (ENSDORG00000011279)	Rnf214 (ENSDORG00000013754)	Bace1 (ENSDORG00000013760)	Dscaml1 (ENSDORG00000010623)	ENSDORG00000010622	Fxyd6 (ENSDORG00000010626)	Tmprss13 (ENSDORG00000014616)	Tmprss4 (ENSDORG00000014916)	Scn4b (ENSDORG00000025459)	Scn2b (ENSDORG00000014911)	ENSDORG00000025814	Mpzl3 (ENSDORG00000003430)	Mpzl2 (ENSDORG00000003431)
Rodentia_A	ANCESTRAL SPECIES	1	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Sciuridae	ANCESTRAL SPECIES	2	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Marmotini	ANCESTRAL SPECIES	20	ENSGT00870000136493.d.m.a	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c.c.a	ENSGT00950000182866.D.c.g.c.c.b	ENSGT00950000182866.D.c.h.b	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Alpin marmot	MODERN SPECIES	25	ENSMMMG00000023254	ENSMMMG00000023242	ENSMMMG00000023231	ENSMMMG00000023228	ENSMMMG00000023224	NXPE2 (ENSMMMG00000023218)	CADM1 (ENSMMMG00000023027)	BUD13 (ENSMMMG00000022995)	ZPR1 (ENSMMMG00000022984)	APOA5 (ENSMMMG00000022979)	ENSMMMG00000022975	APOA4 (ENSMMMG00000022973)	APOC3 (ENSMMMG00000022968)	APOA1 (ENSMMMG00000022965)	SIK3 (ENSMMMG00000022956)	PAFAH1B2 (ENSMMMG00000022949) ##22	SIDT2 (ENSMMMG00000022918)	TAGLN (ENSMMMG00000022913)	PCSK7 (ENSMMMG00000022903)	RNF214 (ENSMMMG00000022855)	BACE1 (ENSMMMG00000022841)	CEP164 (ENSMMMG00000022813)	DSCAML1 (ENSMMMG00000022804)	FXYD2 (ENSMMMG00000022796)	FXYD6 (ENSMMMG00000022790)	TMPRSS13 (ENSMMMG00000022786)	IL10RA (ENSMMMG00000022779)	SMIM35 (ENSMMMG00000022777)	TMPRSS4 (ENSMMMG00000022771)	SCN4B (ENSMMMG00000022769)	SCN2B (ENSMMMG00000022768)
Marmotini_b	ANCESTRAL SPECIES	43							ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Squirrel	MODERN SPECIES	142							NXPE2 (ENSSTOG00000010391)	CADM1 (ENSSTOG00000019484)	BUD13 (ENSSTOG00000002302)	ZPR1 (ENSSTOG00000002307)	APOA5 (ENSSTOG00000027825)	APOA4 (ENSSTOG00000019719)	APOC3 (ENSSTOG00000026818)	APOA1 (ENSSTOG00000002328)	SIK3 (ENSSTOG00000002330)	PAFAH1B2 (ENSSTOG00000011006) ##22	SIDT2 (ENSSTOG00000011013)	TAGLN (ENSSTOG00000011033)	PCSK7 (ENSSTOG00000025485)	RNF214 (ENSSTOG00000026444)	BACE1 (ENSSTOG00000020402)	CEP164 (ENSSTOG00000011380)	DSCAML1 (ENSSTOG00000011396)	FXYD2 (ENSSTOG00000028766)	FXYD6 (ENSSTOG00000023242)	TMPRSS13 (ENSSTOG00000007794)	IL10RA (ENSSTOG00000007838)	SMIM35 (ENSSTOG00000024897)	TMPRSS4 (ENSSTOG00000003485)	SCN4B (ENSSTOG00000028585)	SCN2B (ENSSTOG00000021064)
Arctic ground squirrel	MODERN SPECIES	170							NXPE2 (ENSUPAG00010005136)	CADM1 (ENSUPAG00010005148)	BUD13 (ENSUPAG00010005609)	ZPR1 (ENSUPAG00010005632)	APOA5 (ENSUPAG00010005672)	APOA4 (ENSUPAG00010005691)	APOC3 (ENSUPAG00010005696)	APOA1 (ENSUPAG00010005700)	SIK3 (ENSUPAG00010005710)	PAFAH1B2 (ENSUPAG00010005776) ##22	SIDT2 (ENSUPAG00010005783)	TAGLN (ENSUPAG00010005839)	PCSK7 (ENSUPAG00010005844)	RNF214 (ENSUPAG00010005890)	BACE1 (ENSUPAG00010006050)	CEP164 (ENSUPAG00010006077)	DSCAML1 (ENSUPAG00010006104)	ENSUPAG00010006160	ENSUPAG00010006193	TMPRSS13 (ENSUPAG00010006212)	IL10RA (ENSUPAG00010006230)	SMIM35 (ENSUPAG00010006235)	TMPRSS4 (ENSUPAG00010006241)	ENSUPAG00010006265	SCN2B (ENSUPAG00010006281)
Eurasian red squirrel	MODERN SPECIES	2	REXO2 (ENSSVLG00005020422)	ENSSVLG00005020557	ENSSVLG00005020642	ENSSVLG00005020876	ENSSVLG00005021093	NXPE4 (ENSSVLG00005021122)	NXPE2 (ENSSVLG00005021221)	CADM1 (ENSSVLG00005021385)	BUD13 (ENSSVLG00005021901)	ENSSVLG00005021926	APOA5 (ENSSVLG00005022035)	APOA4 (ENSSVLG00005022074)	APOC3 (ENSSVLG00005022119)	APOA1 (ENSSVLG00005022170)	SIK3 (ENSSVLG00005022246)	PAFAH1B2 (ENSSVLG00005022556) ##22	SIDT2 (ENSSVLG00005022651)	TAGLN (ENSSVLG00005022723)	PCSK7 (ENSSVLG00005022755)	RNF214 (ENSSVLG00005022823)	BACE1 (ENSSVLG00005022881)	CEP164 (ENSSVLG00005022973)	DSCAML1 (ENSSVLG00005023068)	FXYD2 (ENSSVLG00005023606)	FXYD6 (ENSSVLG00005023672)	TMPRSS13 (ENSSVLG00005023759)	IL10RA (ENSSVLG00005023826)	SMIM35 (ENSSVLG00005023865)	TMPRSS4 (ENSSVLG00005023934)	SCN4B (ENSSVLG00005024198)	SCN2B (ENSSVLG00005024230)
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	23	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Degu	DUPLICATION
Degu	MODERN SPECIES	328									ENSODEG00000004697	ENSODEG00000004775	ENSODEG00000004768	METTL7B (ENSODEG00000004695)	ITGA7 (ENSODEG00000004568)	ENSODEG00000004837	CD63 (ENSODEG00000004741)	ENSODEG00000004712 ##22	GDF11 (ENSODEG00000004691)	ENSODEG00000004608	ENSODEG00000004596	DNAJC14 (ENSODEG00000004548)	ENSODEG00000004534	MMP19 (ENSODEG00000004495)	PYM1 (ENSODEG00000004289)	DGKA (ENSODEG00000004252)	PMEL (ENSODEG00000004214)	CDK2 (ENSODEG00000003907)	RAB5B (ENSODEG00000003860)	SUOX (ENSODEG00000003849)	IKZF4 (ENSODEG00000003820)	ENSODEG00000003797	ENSODEG00000018952
Degu	MODERN SPECIES	121	ENSODEG00000010164	ENSODEG00000009750	NXPE4 (ENSODEG00000009082)	NXPE2 (ENSODEG00000009114)	ENSODEG00000008886	ENSODEG00000019777	CADM1 (ENSODEG00000009219)	ENSODEG00000019764	BUD13 (ENSODEG00000009553)	ENSODEG00000009762	APOA5 (ENSODEG00000009824)	APOA4 (ENSODEG00000009495)	APOC3 (ENSODEG00000009621)	APOA1 (ENSODEG00000009009)	SIK3 (ENSODEG00000008742)	ENSODEG00000009634 ##22	SIDT2 (ENSODEG00000008713)	TAGLN (ENSODEG00000010754)	PCSK7 (ENSODEG00000009251)	ENSODEG00000008928	ENSODEG00000019601	RNF214 (ENSODEG00000009904)	BACE1 (ENSODEG00000008334)	CEP164 (ENSODEG00000009294)	DSCAML1 (ENSODEG00000008454)	FXYD2 (ENSODEG00000009675)	FXYD6 (ENSODEG00000009120)	TMPRSS13 (ENSODEG00000009248)	ENSODEG00000008806	IL10RA (ENSODEG00000009228)	ENSODEG00000008922
Long-tailed chinchilla	MODERN SPECIES	119	NNMT (ENSCLAG00000014574)	C11orf71 (ENSCLAG00000014517)	RBM7 (ENSCLAG00000014875)	ENSCLAG00000017767	REXO2 (ENSCLAG00000011195)	NXPE4 (ENSCLAG00000011609)	NXPE2 (ENSCLAG00000011921)	CADM1 (ENSCLAG00000013357)	BUD13 (ENSCLAG00000014184)	ZPR1 (ENSCLAG00000014804)	APOA5 (ENSCLAG00000013015)	APOA4 (ENSCLAG00000015342)	APOC3 (ENSCLAG00000012828)	APOA1 (ENSCLAG00000011551)	SIK3 (ENSCLAG00000014337)	PAFAH1B2 (ENSCLAG00000014390) ##22	SIDT2 (ENSCLAG00000016253)	TAGLN (ENSCLAG00000014865)	PCSK7 (ENSCLAG00000016220)	RNF214 (ENSCLAG00000013474)	BACE1 (ENSCLAG00000013254)	CEP164 (ENSCLAG00000016376)	DSCAML1 (ENSCLAG00000012484)	FXYD2 (ENSCLAG00000014443)	FXYD6 (ENSCLAG00000013828)	TMPRSS13 (ENSCLAG00000015251)	IL10RA (ENSCLAG00000011658)	SMIM35 (ENSCLAG00000011882)	TMPRSS4 (ENSCLAG00000012156)	ENSCLAG00000017818	SCN4B (ENSCLAG00000013104)
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	19	HTR3A (ENSCPOG00000010833)	ZBTB16 (ENSCPOG00000004151)	NNMT (ENSCPOG00000013034)	RBM7 (ENSCPOG00000034273)	REXO2 (ENSCPOG00000010548)	NXPE4 (ENSCPOG00000000299)	NXPE2 (ENSCPOG00000011786)	CADM1 (ENSCPOG00000005736)	BUD13 (ENSCPOG00000014440)	ZPR1 (ENSCPOG00000014442)	APOA5 (ENSCPOG00000014444)	APOA4 (ENSCPOG00000021763)	ENSCPOG00000025900	APOA1 (ENSCPOG00000020511)	SIK3 (ENSCPOG00000014448)	ENSCPOG00000039233 ##22	SIDT2 (ENSCPOG00000007005)	TAGLN (ENSCPOG00000035678)	PCSK7 (ENSCPOG00000008710)	RNF214 (ENSCPOG00000006642)	BACE1 (ENSCPOG00000012754)	CEP164 (ENSCPOG00000012768)	DSCAML1 (ENSCPOG00000014040)	FXYD2 (ENSCPOG00000014050)	FXYD6 (ENSCPOG00000035059)	TMPRSS13 (ENSCPOG00000011938)	IL10RA (ENSCPOG00000030865)	SMIM35 (ENSCPOG00000037236)	TMPRSS4 (ENSCPOG00000005899)	SCN4B (ENSCPOG00000003831)	SCN2B (ENSCPOG00000034956)
Guinea pig	MODERN SPECIES	5	UGGT2 (ENSCPOG00000034839)	DNAJC3 (ENSCPOG00000014938)	DZIP1 (ENSCPOG00000003818)	CLDN10 (ENSCPOG00000003817)	ENSCPOG00000030040	ABCC4 (ENSCPOG00000015119)	GPR180 (ENSCPOG00000001700)	TGDS (ENSCPOG00000001698)	DCT (ENSCPOG00000001695)	GPC6 (ENSCPOG00000001693)	ENSCPOG00000000080	SLITRK5 (ENSCPOG00000034789)	ENSCPOG00000026708	SLITRK1 (ENSCPOG00000014188)	SPRY2 (ENSCPOG00000039286)	ENSCPOG00000032050 ##22	NDFIP2 (ENSCPOG00000014687)	RBM26 (ENSCPOG00000021081)	OBI1 (ENSCPOG00000035300)	EDNRB (ENSCPOG00000015463)	SLAIN1 (ENSCPOG00000002630)	MYCBP2 (ENSCPOG00000003164)	FBXL3 (ENSCPOG00000004983)	CLN5 (ENSCPOG00000033184)	ACOD1 (ENSCPOG00000036243)	KCTD12 (ENSCPOG00000038709)	ENSCPOG00000001402	ENSCPOG00000012261	COMMD6 (ENSCPOG00000021083)	TBC1D4 (ENSCPOG00000010658)	KLF12 (ENSCPOG00000011560)
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000007101	NXPE1 (ENSHGLG00000044726)	NXPE4 (ENSHGLG00000013847)	NXPE2 (ENSHGLG00000046949)	CADM1 (ENSHGLG00000015066)	ENSHGLG00000001469	BUD13 (ENSHGLG00000013562)	ZPR1 (ENSHGLG00000014088)	APOA5 (ENSHGLG00000015377)	APOA4 (ENSHGLG00000049508)	APOC3 (ENSHGLG00000043547)	Apoa1 (ENSHGLG00000043209)	ENSHGLG00000019472	SIK3 (ENSHGLG00000018892)	ENSHGLG00000036675	PAFAH1B2 (ENSHGLG00000038396) ##22	SIDT2 (ENSHGLG00000013525)	TAGLN (ENSHGLG00000036843)	PCSK7 (ENSHGLG00000018206)	RNF214 (ENSHGLG00000015243)	BACE1 (ENSHGLG00000015268)	CEP164 (ENSHGLG00000015286)	DSCAML1 (ENSHGLG00000015299)	FXYD2 (ENSHGLG00000015310)	ENSHGLG00000018229	TMPRSS13 (ENSHGLG00000019043)	IL10RA (ENSHGLG00000038872)	SMIM35 (ENSHGLG00000017558)	TMPRSS4 (ENSHGLG00000017567)	SCN4B (ENSHGLG00000050753)	SCN2B (ENSHGLG00000033638)
Lagomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154616.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341	ENSGT01030000234556.a.a.b
Rabbit	MODERN SPECIES		RBM7 (ENSOCUG00000003342)	REXO2 (ENSOCUG00000004274)	ENSOCUG00000001714	ENSOCUG00000010311	NXPE2 (ENSOCUG00000022316)	CADM1 (ENSOCUG00000000864)	ENSOCUG00000031805	BUD13 (ENSOCUG00000004615)	ZPR1 (ENSOCUG00000004619)	APOA5 (ENSOCUG00000004628)	ENSOCUG00000030723	APOA4 (ENSOCUG00000011233)	ENSOCUG00000027365	APOA1 (ENSOCUG00000010728)	SIK3 (ENSOCUG00000011238)	PAFAH1B2 (ENSOCUG00000039266) ##22	SIDT2 (ENSOCUG00000011955)	ENSOCUG00000011970	PCSK7 (ENSOCUG00000011974)	RNF214 (ENSOCUG00000011993)	BACE1 (ENSOCUG00000022776)	CEP164 (ENSOCUG00000010318)	DSCAML1 (ENSOCUG00000010335)	FXYD2 (ENSOCUG00000010359)	FXYD6 (ENSOCUG00000005593)	ENSOCUG00000030071	NECTIN1 (ENSOCUG00000010458)	ENSOCUG00000028128	TRIM29 (ENSOCUG00000021297)	OAF (ENSOCUG00000025219)	POU2F3 (ENSOCUG00000002831)
Pika	MODERN SPECIES	1503											BUD13 (ENSOPRG00000016230)	ENSOPRG00000018632	ZPR1 (ENSOPRG00000016241)	ENSOPRG00000016264	SIK3 (ENSOPRG00000016276)	PAFAH1B2 (ENSOPRG00000016296) ##22	SIDT2 (ENSOPRG00000016302)	TAGLN (ENSOPRG00000016332)	PCSK7 (ENSOPRG00000016337)	RNF214 (ENSOPRG00000016366)	BACE1 (ENSOPRG00000016392)	CEP164 (ENSOPRG00000016407)	DSCAML1 (ENSOPRG00000016442)	FXYD6 (ENSOPRG00000016509)	TMPRSS13 (ENSOPRG00000016515)
Laurasiatheria	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Laurasiatheria_a	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Artiodactyla	ANCESTRAL SPECIES	1	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Artiodactyla_a	ANCESTRAL SPECIES	1	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Camelidae	ANCESTRAL SPECIES	31	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Alpaca	MODERN SPECIES	1405															ENSVPAG00000004182	PAFAH1B2 (ENSVPAG00000004185) ##22
Arabian camel	MODERN SPECIES	26	ENSCDRG00005014949	ZBTB16 (ENSCDRG00005014980)	ENSCDRG00005015068	ENSCDRG00005015092	C11orf71 (ENSCDRG00005015140)	RBM7 (ENSCDRG00005015155)	REXO2 (ENSCDRG00005015219)	NXPE4 (ENSCDRG00005015340)	NXPE2 (ENSCDRG00005015404)	CADM1 (ENSCDRG00005015534)	BUD13 (ENSCDRG00005017430)	APOA5 (ENSCDRG00005017749)	APOA4 (ENSCDRG00005017771)	APOA1 (ENSCDRG00005017799)	SIK3 (ENSCDRG00005017857)	PAFAH1B2 (ENSCDRG00005018084) ##22	SIDT2 (ENSCDRG00005018155)	TAGLN (ENSCDRG00005018224)	PCSK7 (ENSCDRG00005018259)	RNF214 (ENSCDRG00005018392)	BACE1 (ENSCDRG00005018468)	CEP164 (ENSCDRG00005018590)	DSCAML1 (ENSCDRG00005018684)	ENSCDRG00005019003	FXYD2 (ENSCDRG00005019022)	FXYD6 (ENSCDRG00005019089)	TMPRSS13 (ENSCDRG00005019116)	IL10RA (ENSCDRG00005019163)	SMIM35 (ENSCDRG00005019173)	TMPRSS4 (ENSCDRG00005019215)	SCN4B (ENSCDRG00005019673)
Artiodactyla_b	ANCESTRAL SPECIES	1	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Cetacea	ANCESTRAL SPECIES	4	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Odontoceti	ANCESTRAL SPECIES	4	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00940000162260.g.b	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Odontoceti_a	ANCESTRAL SPECIES	4	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00940000162260.g.b	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Dolphin	MODERN SPECIES	1707																PAFAH1B2 (ENSTTRG00000000972) ##22	SIDT2 (ENSTTRG00000000973)	TAGLN (ENSTTRG00000000975)	PCSK7 (ENSTTRG00000000976)	RNF214 (ENSTTRG00000000977)	BACE1 (ENSTTRG00000000978)	CEP164 (ENSTTRG00000000979)
Odontoceti_b	ANCESTRAL SPECIES	4	ENSGT00390000009255	ENSGT01090000260175.l	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000016760.c.a.a.b	ENSGT00940000162260.g.b	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Vaquita	MODERN SPECIES	19	ENSPSNG00000005613	REXO2 (ENSPSNG00000005534)	ENSPSNG00000005495	NXPE4 (ENSPSNG00000005461)	NXPE2 (ENSPSNG00000005419)	CADM1 (ENSPSNG00000005112)	ENSPSNG00000004969	ENSPSNG00000004945	BUD13 (ENSPSNG00000004929)	ZPR1 (ENSPSNG00000004893)	APOA5 (ENSPSNG00000004870)	APOA4 (ENSPSNG00000004853)	APOC3 (ENSPSNG00000004824)	APOA1 (ENSPSNG00000004800)	SIK3 (ENSPSNG00000004747)	PAFAH1B2 (ENSPSNG00000004658) ##22	SIDT2 (ENSPSNG00000004574)	TAGLN (ENSPSNG00000004514)	PCSK7 (ENSPSNG00000004488)	RNF214 (ENSPSNG00000004438)	BACE1 (ENSPSNG00000004368)	CEP164 (ENSPSNG00000004268)	DSCAML1 (ENSPSNG00000004034)	ENSPSNG00000003952	ENSPSNG00000003917	ENSPSNG00000003892	ENSPSNG00000003882	IL10RA (ENSPSNG00000003874)	SMIM35 (ENSPSNG00000003856)	TMPRSS4 (ENSPSNG00000003731)	SCN4B (ENSPSNG00000003656)
Monodontidae	ANCESTRAL SPECIES	2	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000016760.c.a.a.b	ENSGT00940000162260.g.b	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Narwhal	MODERN SPECIES	314	ENSMMNG00015018102	REXO2 (ENSMMNG00015017974)	NXPE4 (ENSMMNG00015017876)	NXPE2 (ENSMMNG00015017804)	CADM1 (ENSMMNG00015017567)	ENSMMNG00015017467	ENSMMNG00015017454	ENSMMNG00015017372	BUD13 (ENSMMNG00015017316)	ZPR1 (ENSMMNG00015017240)	APOA5 (ENSMMNG00015017211)	APOA4 (ENSMMNG00015017193)	APOC3 (ENSMMNG00015017153)	APOA1 (ENSMMNG00015017133)	SIK3 (ENSMMNG00015017039)	PAFAH1B2 (ENSMMNG00015016972) ##22	SIDT2 (ENSMMNG00015016904)	TAGLN (ENSMMNG00015016866)	PCSK7 (ENSMMNG00015016753)	RNF214 (ENSMMNG00015016685)	BACE1 (ENSMMNG00015016617)	CEP164 (ENSMMNG00015016490)	DSCAML1 (ENSMMNG00015015973)	ENSMMNG00015015793	FXYD6 (ENSMMNG00015015719)	TMPRSS13 (ENSMMNG00015015661)	IL10RA (ENSMMNG00015015626)	SMIM35 (ENSMMNG00015015595)	ENSMMNG00015015504	SCN4B (ENSMMNG00015015446)	SCN2B (ENSMMNG00015021894)
Beluga whale	MODERN SPECIES	70	RBM7 (ENSDLEG00000010595)	REXO2 (ENSDLEG00000010666)	NXPE4 (ENSDLEG00000010684)	ENSDLEG00000010731	CADM1 (ENSDLEG00000010751)	ENSDLEG00000010773	ENSDLEG00000010788	BUD13 (ENSDLEG00000010833)	ZPR1 (ENSDLEG00000010861)	APOA5 (ENSDLEG00000010890)	ENSDLEG00000010906	APOA4 (ENSDLEG00000010932)	APOC3 (ENSDLEG00000010936)	APOA1 (ENSDLEG00000010950)	SIK3 (ENSDLEG00000010969)	PAFAH1B2 (ENSDLEG00000011153) ##22	SIDT2 (ENSDLEG00000011177)	TAGLN (ENSDLEG00000011271)	PCSK7 (ENSDLEG00000011284)	RNF214 (ENSDLEG00000011329)	BACE1 (ENSDLEG00000011356)	CEP164 (ENSDLEG00000011427)	DSCAML1 (ENSDLEG00000012273)	ENSDLEG00000012560	ENSDLEG00000012568	TMPRSS13 (ENSDLEG00000012581)	IL10RA (ENSDLEG00000012644)	ENSDLEG00000012659	SCN4B (ENSDLEG00000012708)	SCN2B (ENSDLEG00000012714)	JAML (ENSDLEG00000012722)
Sperm whale	MODERN SPECIES	7	NNMT (ENSPCTG00005020216)	C16H11orf71 (ENSPCTG00005020202)	RBM7 (ENSPCTG00005020155)	REXO2 (ENSPCTG00005020068)	ENSPCTG00005020032	NXPE2 (ENSPCTG00005019956)	CADM1 (ENSPCTG00005019141)	ENSPCTG00005019023	BUD13 (ENSPCTG00005018964)	ZPR1 (ENSPCTG00005018909)	APOA5 (ENSPCTG00005018861)	APOA4 (ENSPCTG00005018831)	APOC3 (ENSPCTG00005018770)	APOA1 (ENSPCTG00005018711)	SIK3 (ENSPCTG00005018268)	PAFAH1B2 (ENSPCTG00005018144) ##22	SIDT2 (ENSPCTG00005018034)	TAGLN (ENSPCTG00005017989)	PCSK7 (ENSPCTG00005017913)	RNF214 (ENSPCTG00005017809)	BACE1 (ENSPCTG00005017700)	CEP164 (ENSPCTG00005017491)	DSCAML1 (ENSPCTG00005016327)	FXYD2 (ENSPCTG00005016114)	FXYD6 (ENSPCTG00005016001)	TMPRSS13 (ENSPCTG00005015790)	IL10RA (ENSPCTG00005015739)	SMIM35 (ENSPCTG00005015670)	TMPRSS4 (ENSPCTG00005014733)	SCN4B (ENSPCTG00005014586)	SCN2B (ENSPCTG00005014525)
Blue whale	MODERN SPECIES	19	ENSBMSG00010005152	REXO2 (ENSBMSG00010005137)	ENSBMSG00010005113	NXPE4 (ENSBMSG00010005100)	NXPE2 (ENSBMSG00010005081)	CADM1 (ENSBMSG00010004961)	ENSBMSG00010004928	BUD13 (ENSBMSG00010004920)	ZPR1 (ENSBMSG00010004901)	APOA5 (ENSBMSG00010004890)	ENSBMSG00010004884	APOA4 (ENSBMSG00010004880)	APOC3 (ENSBMSG00010004871)	APOA1 (ENSBMSG00010004863)	SIK3 (ENSBMSG00010004803)	PAFAH1B2 (ENSBMSG00010004772) ##22	SIDT2 (ENSBMSG00010004750)	TAGLN (ENSBMSG00010013615)	PCSK7 (ENSBMSG00010013591)	RNF214 (ENSBMSG00010013537)	BACE1 (ENSBMSG00010013422)	CEP164 (ENSBMSG00010013365)	DSCAML1 (ENSBMSG00010013174)	FXYD2 (ENSBMSG00010013119)	TMPRSS13 (ENSBMSG00010013085)	IL10RA (ENSBMSG00010013051)	SMIM35 (ENSBMSG00010013002)	TMPRSS4 (ENSBMSG00010012944)	SCN4B (ENSBMSG00010012879)	SCN2B (ENSBMSG00010012863)	JAML (ENSBMSG00010012805)
Pecora	ANCESTRAL SPECIES	7	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Yarkand deer	MODERN SPECIES		REXO2 (ENSCHYG00000002217)	NXPE4 (ENSCHYG00000002305)	NXPE2 (ENSCHYG00000002317)	ENSCHYG00000002326	CADM1 (ENSCHYG00000002411)	ENSCHYG00000002781	ENSCHYG00000002786	BUD13 (ENSCHYG00000002803)	ZPR1 (ENSCHYG00000002829)	APOA5 (ENSCHYG00000002880)	APOA4 (ENSCHYG00000002893)	ENSCHYG00000002902	ENSCHYG00000002913	SIK3 (ENSCHYG00000002953)	ENSCHYG00000003076	PAFAH1B2 (ENSCHYG00000003081) ##22	SIDT2 (ENSCHYG00000003103)	TAGLN (ENSCHYG00000003204)	PCSK7 (ENSCHYG00000003215)	RNF214 (ENSCHYG00000003257)	BACE1 (ENSCHYG00000003314)	CEP164 (ENSCHYG00000003389)	DSCAML1 (ENSCHYG00000003617)	ENSCHYG00000003772	FXYD6 (ENSCHYG00000003798)	TMPRSS13 (ENSCHYG00000003819)	IL10RA (ENSCHYG00000003846)	SMIM35 (ENSCHYG00000003858)	TMPRSS4 (ENSCHYG00000003894)	ENSCHYG00000003965	SCN2B (ENSCHYG00000003982)
Percora_a	ANCESTRAL SPECIES	6	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Siberian musk deer	MODERN SPECIES	1170								BUD13 (ENSMMSG00000021003)	ZPR1 (ENSMMSG00000020971)	APOA5 (ENSMMSG00000020951)	APOA4 (ENSMMSG00000020931)	APOC3 (ENSMMSG00000020911)	ENSMMSG00000020889	ENSMMSG00000020865	SIK3 (ENSMMSG00000020720)	PAFAH1B2 (ENSMMSG00000020671) ##22	SIDT2 (ENSMMSG00000020598)	TAGLN (ENSMMSG00000020574)	PCSK7 (ENSMMSG00000020517)	RNF214 (ENSMMSG00000020418)	BACE1 (ENSMMSG00000020318)	CEP164 (ENSMMSG00000020099)	DSCAML1 (ENSMMSG00000019615)	ENSMMSG00000019553	ENSMMSG00000019520	TMPRSS13 (ENSMMSG00000019500)	IL10RA (ENSMMSG00000019481)	SMIM35 (ENSMMSG00000019449)	TMPRSS4 (ENSMMSG00000018968)	SCN4B (ENSMMSG00000018877)	SCN2B (ENSMMSG00000018845)
Bovidae	ANCESTRAL SPECIES	6	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Caprinae	ANCESTRAL SPECIES	6	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Rambouillet Sheep	MODERN SPECIES	6	RBM7 (ENSOARG00020023023)	REXO2 (ENSOARG00020023074)	NXPE4 (ENSOARG00020023138)	CADM1 (ENSOARG00020023254)	ENSOARG00020024615	ENSOARG00020024625	ENSOARG00020024668	BUD13 (ENSOARG00020024712)	ZPR1 (ENSOARG00020024736)	APOA5 (ENSOARG00020024755)	ENSOARG00020024769	APOA4 (ENSOARG00020024777)	APOC3 (ENSOARG00020024786)	APOA1 (ENSOARG00020024796)	SIK3 (ENSOARG00020024821)	PAFAH1B2 (ENSOARG00020003224) ##22	SIDT2 (ENSOARG00020003290)	TAGLN (ENSOARG00020003663)	PCSK7 (ENSOARG00020003703)	RNF214 (ENSOARG00020003821)	BACE1 (ENSOARG00020004145)	ENSOARG00020004547	DSCAML1 (ENSOARG00020006009)	FXYD2 (ENSOARG00020006659)	FXYD6 (ENSOARG00020006743)	TMPRSS13 (ENSOARG00020006885)	IL10RA (ENSOARG00020007104)	SMIM35 (ENSOARG00020007401)	TMPRSS4 (ENSOARG00020007492)	SCN4B (ENSOARG00020008129)	SCN2B (ENSOARG00020008245)
Goat	MODERN SPECIES	6	ENSCHIG00000008632	REXO2 (ENSCHIG00000009264)	NXPE4 (ENSCHIG00000023202)	NXPE2 (ENSCHIG00000014116)	CADM1 (ENSCHIG00000025944)	ENSCHIG00000023860	BUD13 (ENSCHIG00000011480)	ZPR1 (ENSCHIG00000014226)	APOA5 (ENSCHIG00000008250)	APOA4 (ENSCHIG00000012715)	APOC3 (ENSCHIG00000014534)	ENSCHIG00000026573	ENSCHIG00000012044	ENSCHIG00000021348	SIK3 (ENSCHIG00000019818)	PAFAH1B2 (ENSCHIG00000014368) ##22	SIDT2 (ENSCHIG00000014004)	TAGLN (ENSCHIG00000014769)	PCSK7 (ENSCHIG00000022978)	RNF214 (ENSCHIG00000001400)	BACE1 (ENSCHIG00000018165)	ENSCHIG00000012554	CEP164 (ENSCHIG00000010652)	DSCAML1 (ENSCHIG00000022882)	ENSCHIG00000022688	FXYD2 (ENSCHIG00000015231)	FXYD6 (ENSCHIG00000016836)	TMPRSS13 (ENSCHIG00000020639)	IL10RA (ENSCHIG00000012823)	ENSCHIG00000018102	TMPRSS4 (ENSCHIG00000012711)
Bovinae	ANCESTRAL SPECIES	21	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT01040000241639	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
American bison	MODERN SPECIES	3365	ENSBBBG00000008488	C11orf71 (ENSBBBG00000001966)	RBM7 (ENSBBBG00000010981)	REXO2 (ENSBBBG00000010953)	NXPE4 (ENSBBBG00000010911)	NXPE2 (ENSBBBG00000007767)	CADM1 (ENSBBBG00000006633)	ENSBBBG00000000247	BUD13 (ENSBBBG00000024621)	ZPR1 (ENSBBBG00000024593)	APOA5 (ENSBBBG00000024548)	APOA1 (ENSBBBG00000006800)	ENSBBBG00000024485	APOC3 (ENSBBBG00000024468)	SIK3 (ENSBBBG00000006365)	PAFAH1B2 (ENSBBBG00000024229) ##22	SIDT2 (ENSBBBG00000024169)	TAGLN (ENSBBBG00000023920)	PCSK7 (ENSBBBG00000023884)	RNF214 (ENSBBBG00000023813)	BACE1 (ENSBBBG00000023674)	ENSBBBG00000023438	DSCAML1 (ENSBBBG00000000350)	FXYD2 (ENSBBBG00000023120)	FXYD6 (ENSBBBG00000023076)	ENSBBBG00000022999	IL10RA (ENSBBBG00000022968)	SMIM35 (ENSBBBG00000022809)	TMPRSS4 (ENSBBBG00000005996)	SCN4B (ENSBBBG00000022702)	SCN2B (ENSBBBG00000022680)
Bos	ANCESTRAL SPECIES	20	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT01040000241639	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT00940000155207.a.a
Bos_b	ANCESTRAL SPECIES	19	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT01040000241639	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.c
Hybrid Bos Indicus	MODERN SPECIES	6	C11orf71 (ENSBIXG00005022918)	RBM7 (ENSBIXG00005022933)	REXO2 (ENSBIXG00005023058)	NXPE4 (ENSBIXG00005023112)	NXPE2 (ENSBIXG00005023143)	CADM1 (ENSBIXG00005023494)	ENSBIXG00005007389	BUD13 (ENSBIXG00005023645)	ZPR1 (ENSBIXG00005023719)	APOA5 (ENSBIXG00005023793)	ENSBIXG00005023816	APOA4 (ENSBIXG00005023843)	ENSBIXG00005023865	APOA1 (ENSBIXG00005004093)	SIK3 (ENSBIXG00005024000)	PAFAH1B2 (ENSBIXG00005004117) ##22	TAGLN (ENSBIXG00005024100)	PCSK7 (ENSBIXG00005024173)	SIDT2 (ENSBIXG00005004156)	RNF214 (ENSBIXG00005024475)	BACE1 (ENSBIXG00005024633)	ENSBIXG00005025056	DSCAML1 (ENSBIXG00005006178)	ENSBIXG00005025375	ENSBIXG00005025421	TMPRSS13 (ENSBIXG00005025432)	IL10RA (ENSBIXG00005004331)	SMIM35 (ENSBIXG00005025483)	ENSBIXG00005025745	SCN4B (ENSBIXG00005025820)	SCN2B (ENSBIXG00005005897)
Cow	MODERN SPECIES	6	C15H11orf71 (ENSBTAG00000008220)	RBM7 (ENSBTAG00000008219)	REXO2 (ENSBTAG00000005843)	NXPE4 (ENSBTAG00000005945)	NXPE2 (ENSBTAG00000031362)	CADM1 (ENSBTAG00000000977)	ENSBTAG00000051331	BUD13 (ENSBTAG00000016855)	ZPR1 (ENSBTAG00000002650)	APOA5 (ENSBTAG00000019764)	APOA4 (ENSBTAG00000019770)	ENSBTAG00000049816	APOC3 (ENSBTAG00000012398)	APOA1 (ENSBTAG00000002258)	SIK3 (ENSBTAG00000015119)	PAFAH1B2 (ENSBTAG00000005627) ##22	SIDT2 (ENSBTAG00000007192)	TAGLN (ENSBTAG00000007196)	PCSK7 (ENSBTAG00000003052)	RNF214 (ENSBTAG00000019358)	BACE1 (ENSBTAG00000019365)	CEP164 (ENSBTAG00000014137)	DSCAML1 (ENSBTAG00000016692)	ENSBTAG00000051802	FXYD2 (ENSBTAG00000009828)	FXYD6 (ENSBTAG00000014354)	ENSBTAG00000050169	TMPRSS13 (ENSBTAG00000008342)	IL10RA (ENSBTAG00000005215)	TMPRSS4 (ENSBTAG00000021518)	SCN4B (ENSBTAG00000039340)
Bos_a	ANCESTRAL SPECIES	15	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT01040000241639	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00900000143310	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT00940000155207.a.a	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Wild yak	MODERN SPECIES	885															SIK3 (ENSBMUG00000013963)	PAFAH1B2 (ENSBMUG00000013767) ##22	SIDT2 (ENSBMUG00000013700)	TAGLN (ENSBMUG00000013597)	PCSK7 (ENSBMUG00000013576)
Domestic yak	MODERN SPECIES	4	NXPE4 (ENSBGRG00000005398)	NXPE2 (ENSBGRG00000005371)	ENSBGRG00000005355	CADM1 (ENSBGRG00000004215)	ENSBGRG00000004097	ENSBGRG00000004083	ENSBGRG00000004077	BUD13 (ENSBGRG00000004009)	ZPR1 (ENSBGRG00000003833)	APOA5 (ENSBGRG00000003796)	ENSBGRG00000003763	APOA4 (ENSBGRG00000003731)	APOC3 (ENSBGRG00000003718)	APOA1 (ENSBGRG00000003668)	SIK3 (ENSBGRG00000025547)	PAFAH1B2 (ENSBGRG00000025526) ##22	SIDT2 (ENSBGRG00000025333)	TAGLN (ENSBGRG00000025309)	PCSK7 (ENSBGRG00000025271)	RNF214 (ENSBGRG00000025229)	BACE1 (ENSBGRG00000025124)	CEP164 (ENSBGRG00000024804)	DSCAML1 (ENSBGRG00000023986)	ENSBGRG00000023876	FXYD2 (ENSBGRG00000023847)	ENSBGRG00000023770	ENSBGRG00000023746	TMPRSS13 (ENSBGRG00000023596)	ENSBGRG00000023575	IL10RA (ENSBGRG00000023432)	SMIM35 (ENSBGRG00000023360)
Suina	ANCESTRAL SPECIES	5	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Chacoan peccary	MODERN SPECIES	906	ZBTB16 (ENSCWAG00000020362)	NNMT (ENSCWAG00000020374)	C11orf71 (ENSCWAG00000020385)	RBM7 (ENSCWAG00000020395)	REXO2 (ENSCWAG00000020411)	NXPE2 (ENSCWAG00000020440)	CADM1 (ENSCWAG00000020505)	BUD13 (ENSCWAG00000021092)	ZPR1 (ENSCWAG00000021109)	APOA5 (ENSCWAG00000021134)	ENSCWAG00000021143	APOA4 (ENSCWAG00000003954)	APOC3 (ENSCWAG00000003983)	APOA1 (ENSCWAG00000004011)	SIK3 (ENSCWAG00000004071)	PAFAH1B2 (ENSCWAG00000004321) ##22	SIDT2 (ENSCWAG00000004351)	TAGLN (ENSCWAG00000004432)	PCSK7 (ENSCWAG00000004456)	RNF214 (ENSCWAG00000004491)	BACE1 (ENSCWAG00000004630)	CEP164 (ENSCWAG00000004733)	DSCAML1 (ENSCWAG00000004801)	FXYD2 (ENSCWAG00000005283)	FXYD6 (ENSCWAG00000005340)	TMPRSS13 (ENSCWAG00000005393)	IL10RA (ENSCWAG00000005446)	SMIM35 (ENSCWAG00000005521)	TMPRSS4 (ENSCWAG00000005571)	SCN4B (ENSCWAG00000005924)	SCN2B (ENSCWAG00000005971)
Pig	MODERN SPECIES	17	ZBTB16 (ENSSSCG00000030095)	NNMT (ENSSSCG00000015054)	C11orf71 (ENSSSCG00000036867)	RBM7 (ENSSSCG00000027905)	REXO2 (ENSSSCG00000015056)	ENSSSCG00000029043	CADM1 (ENSSSCG00000031831)	BUD13 (ENSSSCG00000015065)	ZPR1 (ENSSSCG00000015067)	APOA5 (ENSSSCG00000057143)	APOA4 (ENSSSCG00000040689)	APOC3 (ENSSSCG00000015069)	APOA1 (ENSSSCG00000030921)	SIK3 (ENSSSCG00000015071)	ENSSSCG00000050791	PAFAH1B2 (ENSSSCG00000024027) ##22	SIDT2 (ENSSSCG00000015074)	TAGLN (ENSSSCG00000015073)	PCSK7 (ENSSSCG00000015072)	RNF214 (ENSSSCG00000015077)	BACE1 (ENSSSCG00000015079)	CEP164 (ENSSSCG00000015080)	DSCAML1 (ENSSSCG00000015082)	ENSSSCG00000015084	ENSSSCG00000015083	TMPRSS13 (ENSSSCG00000038710)	IL10RA (ENSSSCG00000015085)	SMIM35 (ENSSSCG00000050318)	TMPRSS4 (ENSSSCG00000015086)	ENSSSCG00000029199	SCN2B (ENSSSCG00000021651)
Laurasiatheria_b	ANCESTRAL SPECIES	1	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Laurasiatheria_c	ANCESTRAL SPECIES	23	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259.d	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Chiroptera	ANCESTRAL SPECIES	33	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259.d	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00730000111921	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Microchiroptera	ANCESTRAL SPECIES	34	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259.d	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Microbat	MODERN SPECIES	1384									ENSMLUG00000014006	ZPR1 (ENSMLUG00000014012)	ENSMLUG00000012436	ENSMLUG00000023892	ENSMLUG00000012429	SIK3 (ENSMLUG00000003237)	ENSMLUG00000027199	PAFAH1B2 (ENSMLUG00000007710) ##22	ENSMLUG00000028975	SIDT2 (ENSMLUG00000007729)	TAGLN (ENSMLUG00000007781)	PCSK7 (ENSMLUG00000007790)	RNF214 (ENSMLUG00000007869)	ENSMLUG00000024355	BACE1 (ENSMLUG00000007898)	CEP164 (ENSMLUG00000006565)	DSCAML1 (ENSMLUG00000006606)
Greater horseshoe bat	MODERN SPECIES	2	ENSRFEG00010007427	REXO2 (ENSRFEG00010007459)	NXPE1 (ENSRFEG00010007603)	CADM1 (ENSRFEG00010007749)	ENSRFEG00010008357	ENSRFEG00010008409	BUD13 (ENSRFEG00010008489)	ZNF259 (ENSRFEG00010008540)	APOA5 (ENSRFEG00010008677)	ENSRFEG00010008710	APOA4 (ENSRFEG00010008766)	ENSRFEG00010008809	APOA1 (ENSRFEG00010008873)	SIK3 (ENSRFEG00010008977)	ENSRFEG00010009106	PAFAH1B2 (ENSRFEG00010009155) ##22	SIDT2 (ENSRFEG00010009244)	ENSRFEG00010009353	PCSK7 (ENSRFEG00010009375)	RNF214 (ENSRFEG00010009434)	BACE1 (ENSRFEG00010009508)	CEP164 (ENSRFEG00010009610)	DSCAML1 (ENSRFEG00010009679)	ENSRFEG00010010051	ENSRFEG00010010078	FXYD6 (ENSRFEG00010010121)	TMPRSS13 (ENSRFEG00010010191)	IL10RA (ENSRFEG00010010267)	SMIM35 (ENSRFEG00010010338)	ENSRFEG00010010403	TMPRSS4 (ENSRFEG00010010450)
Megabat	MODERN SPECIES	798									BUD13 (ENSPVAG00000017826)	ZPR1 (ENSPVAG00000017827)	APOA5 (ENSPVAG00000017828)	APOA4 (ENSPVAG00000017829)	APOC3 (ENSPVAG00000017830)	APOA1 (ENSPVAG00000017831)	SIK3 (ENSPVAG00000017832)	PAFAH1B2 (ENSPVAG00000017834) ##22	SIDT2 (ENSPVAG00000017835)	TAGLN (ENSPVAG00000017837)	PCSK7 (ENSPVAG00000017838)
Equus	ANCESTRAL SPECIES	25	ENSGT00950000182866.D.c.h	ENSGT00950000182866.D.c.g.d	ENSGT00950000182960.a.a.a.a.b.qb.b	ENSGT00940000156093	ENSGT00940000155458.tc	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000185356	ENSGT00950000182929.A	ENSGT00940000157259.d	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Donkey	MODERN SPECIES	12	NXPE4 (ENSEASG00005006666)	ENSEASG00005006664	ENSEASG00005006660	CADM1 (ENSEASG00005006655)	ENSEASG00005006652	ENSEASG00005031751	BUD13 (ENSEASG00005006650)	ZPR1 (ENSEASG00005006581)	APOA5 (ENSEASG00005024582)	ENSEASG00005006573	APOA4 (ENSEASG00005006571)	APOC3 (ENSEASG00005036051)	ENSEASG00005006566	APOA1 (ENSEASG00005038098)	SIK3 (ENSEASG00005006529)	PAFAH1B2 (ENSEASG00005029720) ##22	SIDT2 (ENSEASG00005005820)	TAGLN (ENSEASG00005005736)	PCSK7 (ENSEASG00005005628)	RNF214 (ENSEASG00005005570)	BACE1 (ENSEASG00005005342)	CEP164 (ENSEASG00005005271)	DSCAML1 (ENSEASG00005005178)	FXYD2 (ENSEASG00005035329)	FXYD6 (ENSEASG00005030076)	TMPRSS13 (ENSEASG00005005133)	IL10RA (ENSEASG00005028340)	SMIM35 (ENSEASG00005035901)	TMPRSS4 (ENSEASG00005005118)	SCN4B (ENSEASG00005032138)	SCN2B (ENSEASG00005024495)
Horse	MODERN SPECIES	28	NXPE1 (ENSECAG00000013719)	NXPE4 (ENSECAG00000012359)	ENSECAG00000053989	ENSECAG00000050395	CADM1 (ENSECAG00000015144)	ENSECAG00000028225	BUD13 (ENSECAG00000008863)	ENSECAG00000032980	ZPR1 (ENSECAG00000010981)	APOA5 (ENSECAG00000000418)	APOA4 (ENSECAG00000004903)	APOC3 (ENSECAG00000039785)	APOA1 (ENSECAG00000009752)	SIK3 (ENSECAG00000010252)	ENSECAG00000058875	PAFAH1B2 (ENSECAG00000034204) ##22	SIDT2 (ENSECAG00000021466)	TAGLN (ENSECAG00000056905)	PCSK7 (ENSECAG00000017980)	RNF214 (ENSECAG00000010374)	BACE1 (ENSECAG00000012427)	CEP164 (ENSECAG00000023761)	DSCAML1 (ENSECAG00000009829)	ENSECAG00000030785	IL10RA (ENSECAG00000015030)	TMPRSS4 (ENSECAG00000018818)	SCN4B (ENSECAG00000021370)	SCN2B (ENSECAG00000023394)	JAML (ENSECAG00000000400)	MPZL3 (ENSECAG00000010748)	MPZL2 (ENSECAG00000012396)
Carnivora	ANCESTRAL SPECIES	21	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847
Caniformia	ANCESTRAL SPECIES	17	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847
Caniformia_b	ANCESTRAL SPECIES	3	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483
Ursidae	ANCESTRAL SPECIES	15	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255.db	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259.a	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B.d	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Ursus	ANCESTRAL SPECIES	17	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255.db	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259.a	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.a	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B.d	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
American black bear	MODERN SPECIES	896																PAFAH1B2 (ENSUAMG00000004538) ##22	SIDT2 (ENSUAMG00000004544)	TAGLN (ENSUAMG00000004555)	PCSK7 (ENSUAMG00000004558)	RNF214 (ENSUAMG00000004564)	ENSUAMG00000004569	BACE1 (ENSUAMG00000004571)	ENSUAMG00000004576	ENSUAMG00000004595	DSCAML1 (ENSUAMG00000004659)
Polar bear	MODERN SPECIES	166	ZBTB16 (ENSUMAG00000003782)	NNMT (ENSUMAG00000003777)	C11orf71 (ENSUMAG00000003775)	RBM7 (ENSUMAG00000003774)	REXO2 (ENSUMAG00000003770)	NXPE4 (ENSUMAG00000003762)	ENSUMAG00000003761	CADM1 (ENSUMAG00000003739)	ENSUMAG00000003725	BUD13 (ENSUMAG00000003691)	ZPR1 (ENSUMAG00000003680)	ENSUMAG00000003674	APOC3 (ENSUMAG00000003668)	APOA1 (ENSUMAG00000003652)	SIK3 (ENSUMAG00000003189)	PAFAH1B2 (ENSUMAG00000003136) ##22	SIDT2 (ENSUMAG00000002637)	TAGLN (ENSUMAG00000002571)	PCSK7 (ENSUMAG00000002564)	RNF214 (ENSUMAG00000002557)	BACE1 (ENSUMAG00000002549)	ENSUMAG00000002542	ENSUMAG00000002316	DSCAML1 (ENSUMAG00000002170)	ENSUMAG00000002152	FXYD6 (ENSUMAG00000002147)	TMPRSS13 (ENSUMAG00000002138)	IL10RA (ENSUMAG00000002133)	TMPRSS4 (ENSUMAG00000002091)	SCN4B (ENSUMAG00000002076)	SCN2B (ENSUMAG00000002038)
Giant Panda	MODERN SPECIES	18	HTR3A (ENSAMEG00000013316)	ENSAMEG00000013292	NNMT (ENSAMEG00000013281)	C11orf71 (ENSAMEG00000019702)	RBM7 (ENSAMEG00000013276)	REXO2 (ENSAMEG00000013263)	NXPE4 (ENSAMEG00000013244)	CADM1 (ENSAMEG00000008621)	ENSAMEG00000008712	ZPR1 (ENSAMEG00000008688)	APOA5 (ENSAMEG00000027389)	APOA4 (ENSAMEG00000008673)	APOC3 (ENSAMEG00000024637)	APOA1 (ENSAMEG00000008662)	SIK3 (ENSAMEG00000008635)	PAFAH1B2 (ENSAMEG00000008628) ##22	SIDT2 (ENSAMEG00000008552)	TAGLN (ENSAMEG00000008543)	PCSK7 (ENSAMEG00000008508)	RNF214 (ENSAMEG00000008492)	ENSAMEG00000030145	BACE1 (ENSAMEG00000008462)	CEP164 (ENSAMEG00000008413)	DSCAML1 (ENSAMEG00000008302)	ENSAMEG00000003734	ENSAMEG00000026684	TMPRSS13 (ENSAMEG00000003744)	IL10RA (ENSAMEG00000003778)	SMIM35 (ENSAMEG00000031040)	TMPRSS4 (ENSAMEG00000013261)	SCN4B (ENSAMEG00000026134)
Mustelinae	ANCESTRAL SPECIES	24	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
American mink	MODERN SPECIES	71	HTR3B (ENSNVIG00000006702)	HTR3A (ENSNVIG00000006682)	ZBTB16 (ENSNVIG00000006639)	NNMT (ENSNVIG00000006629)	C11orf71 (ENSNVIG00000006624)	ENSNVIG00000006605	REXO2 (ENSNVIG00000006589)	CADM1 (ENSNVIG00000006427)	BUD13 (ENSNVIG00000006348)	ZPR1 (ENSNVIG00000006334)	APOA5 (ENSNVIG00000006314)	APOA4 (ENSNVIG00000006301)	APOC3 (ENSNVIG00000006288)	APOA1 (ENSNVIG00000006269)	SIK3 (ENSNVIG00000006181)	PA1B2 (ENSNVIG00000006146) ##22	SIDT2 (ENSNVIG00000005877)	TAGLN (ENSNVIG00000005834)	PCSK7 (ENSNVIG00000005791)	RNF214 (ENSNVIG00000005713)	BACE1 (ENSNVIG00000005626)	ENSNVIG00000005611	ENSNVIG00000005596	CEP164 (ENSNVIG00000005529)	DSCAML1 (ENSNVIG00000005360)	FXYD2 (ENSNVIG00000005316)	FXYD6 (ENSNVIG00000005299)	TMPRSS13 (ENSNVIG00000005201)	IL10RA (ENSNVIG00000005191)	SMIM35 (ENSNVIG00000005178)	TMPRSS4 (ENSNVIG00000005109)
Ferret	MODERN SPECIES	188	HTR3A (ENSMPUG00000003924)	ZBTB16 (ENSMPUG00000003929)	NNMT (ENSMPUG00000003937)	C11orf71 (ENSMPUG00000019735)	RBM7 (ENSMPUG00000003941)	REXO2 (ENSMPUG00000003947)	CADM1 (ENSMPUG00000004020)	ENSMPUG00000004028	BUD13 (ENSMPUG00000004040)	ZPR1 (ENSMPUG00000004046)	APOA5 (ENSMPUG00000004144)	APOA4 (ENSMPUG00000004160)	APOC3 (ENSMPUG00000004201)	APOA1 (ENSMPUG00000004218)	SIK3 (ENSMPUG00000004225)	PAFAH1B2 (ENSMPUG00000004246) ##22	SIDT2 (ENSMPUG00000004253)	TAGLN (ENSMPUG00000004272)	PCSK7 (ENSMPUG00000004291)	RNF214 (ENSMPUG00000004301)	BACE1 (ENSMPUG00000004353)	CEP164 (ENSMPUG00000004361)	DSCAML1 (ENSMPUG00000004376)	ENSMPUG00000004397	FXYD2 (ENSMPUG00000004405)	ENSMPUG00000004412	TMPRSS13 (ENSMPUG00000004419)	IL10RA (ENSMPUG00000004427)	TMPRSS4 (ENSMPUG00000004434)	SCN4B (ENSMPUG00000004444)	SCN2B (ENSMPUG00000004448)
Canidae	ANCESTRAL SPECIES	27	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT01030000234556.b.b.d
Canis_lupus	ANCESTRAL SPECIES	28	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00520000058142	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT01030000234556.b.b.d
Dog	MODERN SPECIES	33	ENSCAFG00845000214	NNMT (ENSCAFG00845004639)	C11orf71 (ENSCAFG00845004631)	RBM7 (ENSCAFG00845004624)	REXO2 (ENSCAFG00845004561)	NXPE4 (ENSCAFG00845004542)	CADM1 (ENSCAFG00845004496)	ENSCAFG00845004369	BUD13 (ENSCAFG00845004333)	ZPR1 (ENSCAFG00845004318)	APOA5 (ENSCAFG00845004306)	APOA4 (ENSCAFG00845004295)	APOC3 (ENSCAFG00845004284)	APOA1 (ENSCAFG00845004266)	SIK3 (ENSCAFG00845004222)	PAFAH1B2 (ENSCAFG00845004183) ##22	SIDT2 (ENSCAFG00845004135)	PCSK7 (ENSCAFG00845004009)	RNF214 (ENSCAFG00845003923)	BACE1 (ENSCAFG00845003800)	CEP164 (ENSCAFG00845003568)	ENSCAFG00845003509	DSCAML1 (ENSCAFG00845003448)	FXYD2 (ENSCAFG00845003379)	FXYD6 (ENSCAFG00845003278)	TMPRSS13 (ENSCAFG00845003228)	IL10RA (ENSCAFG00845003194)	TMPRSS4 (ENSCAFG00845003032)	ENSCAFG00845002790	SCN2B (ENSCAFG00845002736)	JAML (ENSCAFG00845002618)
Dingo	MODERN SPECIES	214	ZBTB16 (ENSCAFG00020002582)	ENSCAFG00020002568	NNMT (ENSCAFG00020002563)	C11orf71 (ENSCAFG00020002560)	RBM7 (ENSCAFG00020002518)	REXO2 (ENSCAFG00020002513)	NXPE4 (ENSCAFG00020002498)	CADM1 (ENSCAFG00020002421)	BUD13 (ENSCAFG00020002396)	ZPR1 (ENSCAFG00020002310)	APOA5 (ENSCAFG00020002299)	APOA4 (ENSCAFG00020002295)	APOC3 (ENSCAFG00020002278)	APOA1 (ENSCAFG00020002273)	SIK3 (ENSCAFG00020001944)	PAFAH1B2 (ENSCAFG00020001903) ##22	SIDT2 (ENSCAFG00020001891)	TAGLN (ENSCAFG00020001887)	PCSK7 (ENSCAFG00020001876)	RNF214 (ENSCAFG00020001863)	BACE1 (ENSCAFG00020001856)	CEP164 (ENSCAFG00020001833)	DSCAML1 (ENSCAFG00020001756)	ENSCAFG00020001744	ENSCAFG00020001722	FXYD6 (ENSCAFG00020001712)	TMPRSS13 (ENSCAFG00020001677)	IL10RA (ENSCAFG00020001667)	TMPRSS4 (ENSCAFG00020001618)	SCN4B (ENSCAFG00020001568)	SCN2B (ENSCAFG00020001536)
Red fox	MODERN SPECIES	29		CUNH11orf71 (ENSVVUG00000025227)	RBM7 (ENSVVUG00000025225)	REXO2 (ENSVVUG00000025223)	NXPE4 (ENSVVUG00000025218)	CADM1 (ENSVVUG00000025207)	ENSVVUG00000025198	ENSVVUG00000025197	BUD13 (ENSVVUG00000025196)	ZPR1 (ENSVVUG00000025195)	APOA5 (ENSVVUG00000025194)	APOA4 (ENSVVUG00000025192)	APOC3 (ENSVVUG00000025189)	APOA1 (ENSVVUG00000025187)	SIK3 (ENSVVUG00000025160)	PAFAH1B2 (ENSVVUG00000025142) ##22	SIDT2 (ENSVVUG00000024787)	TAGLN (ENSVVUG00000024731)	PCSK7 (ENSVVUG00000024724)	RNF214 (ENSVVUG00000024712)	BACE1 (ENSVVUG00000024709)	CEP164 (ENSVVUG00000024669)	DSCAML1 (ENSVVUG00000024362)	ENSVVUG00000024345	FXYD6 (ENSVVUG00000024344)	IL10RA (ENSVVUG00000024342)	TMPRSS13 (ENSVVUG00000024330)	TMPRSS4 (ENSVVUG00000024321)	SCN4B (ENSVVUG00000024319)	SCN2B (ENSVVUG00000024317)	JAML (ENSVVUG00000024313)
Felidae	ANCESTRAL SPECIES		ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00980000202537	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483
Cat	MODERN SPECIES	241	HTR3B (ENSFCAG00000004982)	HTR3A (ENSFCAG00000004983)	ZBTB16 (ENSFCAG00000026205)	ENSFCAG00000042461	RBM7 (ENSFCAG00000040484)	REXO2 (ENSFCAG00000018632)	CADM1 (ENSFCAG00000023346)	BUD13 (ENSFCAG00000011856)	ZPR1 (ENSFCAG00000011857)	APOA5 (ENSFCAG00000011858)	APOA4 (ENSFCAG00000042224)	ENSFCAG00000046943	APOC3 (ENSFCAG00000029559)	APOA1 (ENSFCAG00000018483)	SIK3 (ENSFCAG00000008202)	PAFAH1B2 (ENSFCAG00000029945) ##22	SIDT2 (ENSFCAG00000013575)	BACE1 (ENSFCAG00000000178)	PCSK7 (ENSFCAG00000013582)	RNF214 (ENSFCAG00000031019)	ENSFCAG00000050608	ENSFCAG00000041049	DSCAML1 (ENSFCAG00000011758)	FXYD2 (ENSFCAG00000034959)	FXYD6 (ENSFCAG00000011761)	TMPRSS13 (ENSFCAG00000011762)	IL10RA (ENSFCAG00000011763)	SMIM35 (ENSFCAG00000040609)	TMPRSS4 (ENSFCAG00000011765)	SCN4B (ENSFCAG00000043766)	JAML (ENSFCAG00000011769)
Panthera	ANCESTRAL SPECIES	26	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a
Tiger	MODERN SPECIES	140								CADM1 (ENSPTIG00000011524)	BUD13 (ENSPTIG00000010320)	ZPR1 (ENSPTIG00000008423)	APOA5 (ENSPTIG00000007676)	APOA4 (ENSPTIG00000006549)	APOC3 (ENSPTIG00000004093)	ENSPTIG00000000224	SIK3 (ENSPTIG00000021951)	PAFAH1B2 (ENSPTIG00000021694) ##22	ENSPTIG00000021353	ENSPTIG00000019661	TAGLN (ENSPTIG00000016627)	PCSK7 (ENSPTIG00000008351)	RNF214 (ENSPTIG00000003902)	BACE1 (ENSPTIG00000016174)	CEP164 (ENSPTIG00000012947)	ENSPTIG00000001118	DSCAML1 (ENSPTIG00000008025)	ENSPTIG00000006934	FXYD2 (ENSPTIG00000006235)	FXYD6 (ENSPTIG00000021745)	TMPRSS13 (ENSPTIG00000017785)	IL10RA (ENSPTIG00000017001)	SMIM35 (ENSPTIG00000016482)
Panthera_a	ANCESTRAL SPECIES	29	ENSGT00940000154616.b	ENSGT00390000011708.a.k.a.a	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00390000015395	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00940000155052.e.b.b.c.b	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
lion	MODERN SPECIES	10	ZBTB16 (ENSPLOG00000017495)	ENSPLOG00000017537	NNMT (ENSPLOG00000017608)	C11orf71 (ENSPLOG00000017662)	RBM7 (ENSPLOG00000017675)	REXO2 (ENSPLOG00000017711)	CADM1 (ENSPLOG00000017872)	BUD13 (ENSPLOG00000018171)	ZPR1 (ENSPLOG00000018371)	APOA5 (ENSPLOG00000018515)	ENSPLOG00000018553	APOA4 (ENSPLOG00000018574)	APOC3 (ENSPLOG00000018613)	APOA1 (ENSPLOG00000018683)	SIK3 (ENSPLOG00000018746)	PAFAH1B2 (ENSPLOG00000019070) ##22	SIDT2 (ENSPLOG00000019139)	TAGLN (ENSPLOG00000019388)	PCSK7 (ENSPLOG00000019419)	RNF214 (ENSPLOG00000019487)	BACE1 (ENSPLOG00000019573)	ENSPLOG00000019844	CEP164 (ENSPLOG00000020012)	DSCAML1 (ENSPLOG00000020699)	FXYD2 (ENSPLOG00000021094)	ENSPLOG00000021160	ENSPLOG00000021224	IL10RA (ENSPLOG00000021331)	SMIM35 (ENSPLOG00000021343)	TMPRSS4 (ENSPLOG00000021401)	SCN4B (ENSPLOG00000021552)
leopard	DUPLICATION
leopard	MODERN SPECIES	54	HTR3A (ENSPPRG00000002141)	ZBTB16 (ENSPPRG00000002582)	ENSPPRG00000002934	NNMT (ENSPPRG00000003013)	ENSPPRG00000003205	RBM7 (ENSPPRG00000004372)	REXO2 (ENSPPRG00000007255)	CADM1 (ENSPPRG00000014294)	BUD13 (ENSPPRG00000017223)	ZPR1 (ENSPPRG00000018749)	APOA5 (ENSPPRG00000019436)	APOA4 (ENSPPRG00000019811)	APOC3 (ENSPPRG00000024253)	APOA1 (ENSPPRG00000023783)	SIK3 (ENSPPRG00000000778)	ENSPPRG00000001546 ##22	SIDT2 (ENSPPRG00000012315)	TAGLN (ENSPPRG00000012755)	PCSK7 (ENSPPRG00000013983)	RNF214 (ENSPPRG00000016138)	BACE1 (ENSPPRG00000025033)	ENSPPRG00000024804	CEP164 (ENSPPRG00000024518)	DSCAML1 (ENSPPRG00000022884)	FXYD2 (ENSPPRG00000000076)	FXYD6 (ENSPPRG00000000952)	TMPRSS13 (ENSPPRG00000002130)	IL10RA (ENSPPRG00000002438)	SMIM35 (ENSPPRG00000002967)	TMPRSS4 (ENSPPRG00000006860)	SCN4B (ENSPPRG00000007230)
leopard	MODERN SPECIES	40				ARRDC3 (ENSPPRG00000024372)	ADGRV1 (ENSPPRG00000019300)	LYSMD3 (ENSPPRG00000006547)	ENSPPRG00000006320	MBLAC2 (ENSPPRG00000006169)	CETN3 (ENSPPRG00000005808)	MEF2C (ENSPPRG00000004433)	ENSPPRG00000025023	TMEM161B (ENSPPRG00000025054)	CCNH (ENSPPRG00000019964)	RASA1 (ENSPPRG00000018762)	COX7C (ENSPPRG00000013235)	ENSPPRG00000013140 ##22	EDIL3 (ENSPPRG00000012668)	HAPLN1 (ENSPPRG00000011520)	ENSPPRG00000010678	XRCC4 (ENSPPRG00000008800)	ENSPPRG00000008129	ENSPPRG00000007337	ENSPPRG00000007261	RPS23 (ENSPPRG00000006877)	ENSPPRG00000005949	ATG10 (ENSPPRG00000005547)	SSBP2 (ENSPPRG00000004684)	ACOT12 (ENSPPRG00000022908)	ZCCHC9 (ENSPPRG00000023474)	CKMT2 (ENSPPRG00000023587)	RASGRF2 (ENSPPRG00000024375)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183199.a.a ##22
Hedgehog	MODERN SPECIES	6308																ENSEEUG00000008072 ##22
Common shrew	MODERN SPECIES	8837																PAFAH1B2 (ENSSARG00000006209) ##22
Atlantogenata	ANCESTRAL SPECIES	54																ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00670000099483	ENSGT01020000230389.a.a.a	ENSGT00940000176135	ENSGT01030000234556.b.b.c
Xenarthra	ANCESTRAL SPECIES	1166																ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676
Sloth	MODERN SPECIES	5602																ENSCHOG00000009169 ##22
Armadillo	MODERN SPECIES	893																PAFAH1B2 (ENSDNOG00000039052) ##22	SIDT2 (ENSDNOG00000032368)	TAGLN (ENSDNOG00000015260)	PCSK7 (ENSDNOG00000015265)	CCKAR (ENSDNOG00000025651)	TBC1D19 (ENSDNOG00000010759)	STIM2 (ENSDNOG00000010369)	ENSDNOG00000035056
Afrotheria	ANCESTRAL SPECIES	51					ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c.i.a	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b.h	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00940000172809
Afrotheria_a	ANCESTRAL SPECIES	46	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.k.b	ENSGT00390000007962	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.g.c.i.a	ENSGT00950000182866.D.c.h	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b.h	ENSGT00950000183078.b.a.b.g	ENSGT00940000155354	ENSGT00940000153062.A.b.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Hyrax	MODERN SPECIES	5161																PAFAH1B2 (ENSPCAG00000005001) ##22	SIDT2 (ENSPCAG00000005029)	TAGLN (ENSPCAG00000005176)	PCSK7 (ENSPCAG00000005189)	RNF214 (ENSPCAG00000005305)	BACE1 (ENSPCAG00000005410)
Tenrec	MODERN SPECIES	6131																PAFAH1B2 (ENSETEG00000013443) ##22
Platypus	MODERN SPECIES	2	ZBTB16 (ENSOANG00000049678)	NNMT (ENSOANG00000047239)	RBM7 (ENSOANG00000001754)	ENSOANG00000013471	ENSOANG00000039384	ENSOANG00000038092	ENSOANG00000013472	ENSOANG00000047819	CADM1 (ENSOANG00000048135)	BUD13 (ENSOANG00000038767)	ZPR1 (ENSOANG00000009914)	ENSOANG00000045327	ENSOANG00000046282	ENSOANG00000043746	SIK3 (ENSOANG00000015712)	PAFAH1B2 (ENSOANG00000038644) ##22	SIDT2 (ENSOANG00000046083)	TAGLN (ENSOANG00000007208)	PCSK7 (ENSOANG00000047725)	RNF214 (ENSOANG00000014350)	BACE1 (ENSOANG00000014353)	ENSOANG00000011542	DSCAML1 (ENSOANG00000037926)	ENSOANG00000005509	ENSOANG00000047548	TMPRSS13 (ENSOANG00000015084)	IL10RA (ENSOANG00000050447)	TMPRSS4 (ENSOANG00000002343)	ENSOANG00000043651	SCN2B (ENSOANG00000045073)	ENSOANG00000042379
Sauria	ANCESTRAL SPECIES	31	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Lepidosauria	ANCESTRAL SPECIES	20	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.e	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341
Episquamata	ANCESTRAL SPECIES	12	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.e	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT01020000230360.c.b.a.b.b.d	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799
Laterata	ANCESTRAL SPECIES	15	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.i.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c.e	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00990000213104	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT00940000153118.eb	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	42	ENSSMRG00000021395	ENSSMRG00000021396	ENSSMRG00000021413	ENSSMRG00000021414	RBM7 (ENSSMRG00000021415)	REXO2 (ENSSMRG00000021416)	ENSSMRG00000021417	CADM1 (ENSSMRG00000021418)	BUD13 (ENSSMRG00000021429)	ENSSMRG00000021430	ENSSMRG00000021431	APOA4 (ENSSMRG00000021432)	ENSSMRG00000021433	APOA1 (ENSSMRG00000021434)	SIK3 (ENSSMRG00000021435)	ENSSMRG00000021525 ##22	SIDT2 (ENSSMRG00000021526)	TAGLN (ENSSMRG00000021527)	PCSK7 (ENSSMRG00000021529)	RNF214 (ENSSMRG00000021712)	BACE1 (ENSSMRG00000021713)	C2CD2L (ENSSMRG00000021714)	DPAGT1 (ENSSMRG00000021715)	ENSSMRG00000021716	HMBS (ENSSMRG00000021717)	VPS11 (ENSSMRG00000021718)	HYOU1 (ENSSMRG00000021719)	SLC37A4 (ENSSMRG00000021720)	TRAPPC4 (ENSSMRG00000021721)	ENSSMRG00000021722	CENATAC (ENSSMRG00000021723)
Argentine black and white tegu	MODERN SPECIES	12															ADGRF5 (ENSSMRG00000021124)	ENSSMRG00000021123 ##22	TNFRSF21 (ENSSMRG00000021121)	CD2AP (ENSSMRG00000021120)	OPN5 (ENSSMRG00000021117)	PTCHD4 (ENSSMRG00000021114)	ENSSMRG00000021106	ITSN2 (ENSSMRG00000021102)	MRPL19 (ENSSMRG00000021100)	EVA1A (ENSSMRG00000021099)	ENSSMRG00000021096	SPRYD7 (ENSSMRG00000021093)	TRIM13 (ENSSMRG00000021092)	RCBTB1 (ENSSMRG00000021089)	ENSSMRG00000021088	ENSSMRG00000021087	RAB20 (ENSSMRG00000021086)
Common wall lizard	MODERN SPECIES	6	ENSPMRG00000018472	REXO2 (ENSPMRG00000018501)	ENSPMRG00000018529	ENSPMRG00000018534	ENSPMRG00000018536	CADM1 (ENSPMRG00000018549)	ENSPMRG00000018563	BUD13 (ENSPMRG00000018571)	ZPR1 (ENSPMRG00000018586)	APOA5 (ENSPMRG00000018640)	ENSPMRG00000018644	APOA4 (ENSPMRG00000018646)	ENSPMRG00000018650	APOA1 (ENSPMRG00000018653)	SIK3 (ENSPMRG00000018695)	PAFAH1B2 (ENSPMRG00000018844) ##22	SIDT2 (ENSPMRG00000018985)	ENSPMRG00000019591	ENSPMRG00000019741	PCSK7 (ENSPMRG00000019786)	RNF214 (ENSPMRG00000020048)	BACE1 (ENSPMRG00000020086)	ENSPMRG00000020101	DPAGT1 (ENSPMRG00000020110)	ENSPMRG00000020121	ENSPMRG00000020123	VPS11 (ENSPMRG00000020143)	HYOU1 (ENSPMRG00000020208)	SLC37A4 (ENSPMRG00000020226)	TRAPPC4 (ENSPMRG00000020250)	RPS25 (ENSPMRG00000020272)
Toxicofera	ANCESTRAL SPECIES	20	ENSGT00390000016427	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT01020000230360.c.b.a.b.b.d	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799
Elapidae	ANCESTRAL SPECIES	15	ENSGT01000000220650	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.h	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT01020000230360.c.b.a.b.b.d	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799.f
Elapidae_a	ANCESTRAL SPECIES	31	ENSGT00940000161922.i.a	ENSGT00940000157670.j	ENSGT00940000157670.i	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.g.a.a.a	ENSGT00390000011708.a.h	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT00990000212402	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799.f	ENSGT00940000162993
Acanthophiinae	ANCESTRAL SPECIES	30	ENSGT00940000161922.i.a	ENSGT00940000157670.j.a	ENSGT00940000157670.i	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.g.a.a.a	ENSGT00390000011708.a.h	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT00990000212402	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT00390000009083	ENSGT00940000153635.A	ENSGT00940000157686	ENSGT00730000111086	ENSGT00940000153761.B	ENSGT00390000004856.w.a.a.b.a	ENSGT00390000007799.f	ENSGT00940000162993
Mainland tiger snake	MODERN SPECIES	143	ENSNSUG00000004160	ENSNSUG00000004164	ENSNSUG00000004170	ENSNSUG00000004172	HTR3A (ENSNSUG00000004173)	ENSNSUG00000004176	RBM7 (ENSNSUG00000004183)	REXO2 (ENSNSUG00000004199)	CADM1 (ENSNSUG00000004209)	BUD13 (ENSNSUG00000004214)	ZPR1 (ENSNSUG00000004215)	ENSNSUG00000004222	APOA4 (ENSNSUG00000004225)	ENSNSUG00000004232	SIK3 (ENSNSUG00000004238)	PAFAH1B2 (ENSNSUG00000004385) ##22	SIDT2 (ENSNSUG00000004393)	PCSK7 (ENSNSUG00000004803)	TAGLN (ENSNSUG00000005120)	RNF214 (ENSNSUG00000005121)	BACE1 (ENSNSUG00000005124)	C2CD2L (ENSNSUG00000005126)	DPAGT1 (ENSNSUG00000005142)	ENSNSUG00000005144	HMBS (ENSNSUG00000005145)	VPS11 (ENSNSUG00000005148)	HYOU1 (ENSNSUG00000005319)	SLC37A4 (ENSNSUG00000006744)	TRAPPC4 (ENSNSUG00000006746)	RPS25 (ENSNSUG00000006747)	CENATAC (ENSNSUG00000006751)
Eastern brown snake	MODERN SPECIES	42	ZW10 (ENSPTXG00000004831)	ENSPTXG00000004898	ENSPTXG00000004899	USP28 (ENSPTXG00000004900)	HTR3A (ENSPTXG00000004902)	ZBTB16 (ENSPTXG00000004903)	ENSPTXG00000004904	ENSPTXG00000004905	RBM7 (ENSPTXG00000004906)	REXO2 (ENSPTXG00000004907)	CADM1 (ENSPTXG00000004908)	BUD13 (ENSPTXG00000004909)	ZPR1 (ENSPTXG00000004910)	ENSPTXG00000004911	ENSPTXG00000004912	PAFAH1B2 (ENSPTXG00000004914) ##22	SIDT2 (ENSPTXG00000004916)	TAGLN (ENSPTXG00000004917)	PCSK7 (ENSPTXG00000004919)	RNF214 (ENSPTXG00000004920)	BACE1 (ENSPTXG00000004921)	ENSPTXG00000004922	C2CD2L (ENSPTXG00000004923)	DPAGT1 (ENSPTXG00000004924)	ENSPTXG00000004925	HMBS (ENSPTXG00000004926)	VPS11 (ENSPTXG00000004927)	HYOU1 (ENSPTXG00000005136)	SLC37A4 (ENSPTXG00000005141)	TRAPPC4 (ENSPTXG00000005144)	RPS25 (ENSPTXG00000005145)
Blue-lipped sea krait	MODERN SPECIES	802	ENSLLTG00000012904	TREH (ENSLLTG00000002892)	DDX6 (ENSLLTG00000002926)	CXCR5 (ENSLLTG00000002958)	BCL9L (ENSLLTG00000002976)	ENSLLTG00000003771	ENSLLTG00000003786	TRAPPC4 (ENSLLTG00000003809)	RPS25 (ENSLLTG00000003828)	SLC37A4 (ENSLLTG00000003860)	HYOU1 (ENSLLTG00000004193)	VPS11 (ENSLLTG00000011418)	HMBS (ENSLLTG00000011616)	ENSLLTG00000011647	SIK3 (ENSLLTG00000011670)	PAFAH1B2 (ENSLLTG00000011745) ##22	SIDT2 (ENSLLTG00000011782)	TAGLN (ENSLLTG00000011892)	PCSK7 (ENSLLTG00000011904)	RNF214 (ENSLLTG00000011921)	BACE1 (ENSLLTG00000011940)	C2CD2L (ENSLLTG00000011961)	DPAGT1 (ENSLLTG00000011981)
Indian cobra	MODERN SPECIES	7	ENSNNAG00000011192	ENSNNAG00000011206	ENSNNAG00000011268	ENSNNAG00000011293	ENSNNAG00000011324	ENSNNAG00000011338	ENSNNAG00000011354	RBM7 (ENSNNAG00000011366)	REXO2 (ENSNNAG00000011387)	CADM1 (ENSNNAG00000011435)	BUD13 (ENSNNAG00000011636)	ZPR1 (ENSNNAG00000011674)	APOA4 (ENSNNAG00000011808)	APOA1 (ENSNNAG00000011835)	SIK3 (ENSNNAG00000011877)	PAFAH1B2 (ENSNNAG00000012054) ##22	SIDT2 (ENSNNAG00000012081)	TAGLN (ENSNNAG00000012309)	PCSK7 (ENSNNAG00000012335)	RNF214 (ENSNNAG00000012389)	BACE1 (ENSNNAG00000012424)	C2CD2L (ENSNNAG00000012483)	ENSNNAG00000012751	ENSNNAG00000012801	HMBS (ENSNNAG00000012827)	VPS11 (ENSNNAG00000012879)	HYOU1 (ENSNNAG00000012926)	SLC37A4 (ENSNNAG00000013000)	TRAPPC4 (ENSNNAG00000013040)	RPS25 (ENSNNAG00000013057)	CENATAC (ENSNNAG00000013079)
tuatara	MODERN SPECIES	814	ENSSPUG00000006204	ENSSPUG00000006148	ENSSPUG00000006089	ENSSPUG00000006054	ENSSPUG00000006048	RBM7 (ENSSPUG00000006032)	REXO2 (ENSSPUG00000006005)	CADM1 (ENSSPUG00000005747)	ENSSPUG00000005694	BUD13 (ENSSPUG00000005673)	ZPR1 (ENSSPUG00000005660)	APOA4 (ENSSPUG00000005634)	APOA1 (ENSSPUG00000005629)	SIK3 (ENSSPUG00000005617)	ENSSPUG00000005603	PAFAH1B2 (ENSSPUG00000005587) ##22	ENSSPUG00000005450	ENSSPUG00000005337	TAGLN (ENSSPUG00000005298)	PCSK7 (ENSSPUG00000005264)	RNF214 (ENSSPUG00000005226)	BACE1 (ENSSPUG00000005199)	ENSSPUG00000005177	ENSSPUG00000005118	ENSSPUG00000005103	DSCAML1 (ENSSPUG00000005049)	ENSSPUG00000005038	ENSSPUG00000005020	FXYD6 (ENSSPUG00000005014)	TMPRSS13 (ENSSPUG00000004987)	IL10RA (ENSSPUG00000004981)
Archelosauria	ANCESTRAL SPECIES	31	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Archosauria	ANCESTRAL SPECIES	26	ENSGT00940000157670	ENSGT00940000158478	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Aves	ANCESTRAL SPECIES	46	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Neognathae	ANCESTRAL SPECIES	29	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Galloanserae	ANCESTRAL SPECIES	27	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Phasianidae	ANCESTRAL SPECIES	27	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Phasianidae_b	ANCESTRAL SPECIES	26	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Chicken	MODERN SPECIES	16	ENSGALG00010026127	USP28 (ENSGALG00010024334)	HTR3A (ENSGALG00010024453)	ZBTB32 (ENSGALG00010024462)	ENSGALG00010024470	RBM7 (ENSGALG00010024667)	REXO2 (ENSGALG00010024673)	CADM1 (ENSGALG00010024688)	BUD13 (ENSGALG00010024720)	ZPR1 (ENSGALG00010024734)	APOA5 (ENSGALG00010024749)	APOA4 (ENSGALG00010024750)	APOC3 (ENSGALG00010024759)	APOA1 (ENSGALG00010024773)	SIK3 (ENSGALG00010024788)	PAFAH1B2 (ENSGALG00010023057) ##22	SIDT2 (ENSGALG00010023070)	TAGLN (ENSGALG00010023078)	PCSK7 (ENSGALG00010023086)	RNF214 (ENSGALG00010023123)	BACE1 (ENSGALG00010023208)	CEP164 (ENSGALG00010023223)	ENSGALG00010023258	DSCAML1 (ENSGALG00010023267)	ENSGALG00010022761	FXYD6 (ENSGALG00010022769)	TMPRSS13 (ENSGALG00010022782)	IL10RA (ENSGALG00010023598)	ENSGALG00010023631	SCN4B (ENSGALG00010023643)	SCN2B (ENSGALG00010023648)
Turkey	MODERN SPECIES	18	ENSMGAG00000002877	ENSMGAG00000019082	ENSMGAG00000002883	ENSMGAG00000002933	ENSMGAG00000002967	RBM7 (ENSMGAG00000003004)	REXO2 (ENSMGAG00000003026)	CADM1 (ENSMGAG00000003046)	ZPR1 (ENSMGAG00000003085)	BUD13 (ENSMGAG00000003081)	APOA5 (ENSMGAG00000003128)	APOA4 (ENSMGAG00000003136)	ENSMGAG00000019422	APOA1 (ENSMGAG00000003169)	SIK3 (ENSMGAG00000003173)	PAFAH1B2 (ENSMGAG00000021986) ##22	SIDT2 (ENSMGAG00000003258)	TAGLN (ENSMGAG00000003326)	PCSK7 (ENSMGAG00000003343)	RNF214 (ENSMGAG00000003402)	BACE1 (ENSMGAG00000003429)	CEP164 (ENSMGAG00000003462)	DSCAML1 (ENSMGAG00000003523)	ENSMGAG00000019951	FXYD6 (ENSMGAG00000020556)	TMPRSS13 (ENSMGAG00000003659)	IL10RA (ENSMGAG00000003807)	ENSMGAG00000018237	TMPRSS4 (ENSMGAG00000003818)	SCN4B (ENSMGAG00000003928)	SCN2B (ENSMGAG00000019114)
Japanese quail	MODERN SPECIES	16	UBE4A (ENSCJPG00005009790)	ENSCJPG00005009792	ENSCJPG00005009794	USP28 (ENSCJPG00005009822)	HTR3A (ENSCJPG00005010913)	ZBTB16 (ENSCJPG00005010932)	RBM7 (ENSCJPG00005010933)	REXO2 (ENSCJPG00005010934)	CADM1 (ENSCJPG00005010936)	BUD13 (ENSCJPG00005010937)	ZPR1 (ENSCJPG00005010938)	ENSCJPG00005010967	APOA4 (ENSCJPG00005010968)	APOA1 (ENSCJPG00005010969)	SIK3 (ENSCJPG00005010972)	PAFAH1B2 (ENSCJPG00005010979) ##22	PCSK7 (ENSCJPG00005011148)	TAGLN (ENSCJPG00005011318)	RNF214 (ENSCJPG00005011320)	BACE1 (ENSCJPG00005011419)	DSCAML1 (ENSCJPG00005011440)	ENSCJPG00005011549	FXYD6 (ENSCJPG00005011551)	TMPRSS13 (ENSCJPG00005011553)	IL10RA (ENSCJPG00005011563)	TMPRSS4 (ENSCJPG00005011567)	SCN4B (ENSCJPG00005011577)	SCN2B (ENSCJPG00005011578)	ENSCJPG00005011579	MPZL2 (ENSCJPG00005011580)	CD3E (ENSCJPG00005011582)
Anatidae	ANCESTRAL SPECIES	30	ENSGT00390000009300.b	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Duck	MODERN SPECIES	16	ARCN1 (ENSAPLG00000005425)	IFT46 (ENSAPLG00000005573)	TMEM25 (ENSAPLG00000005570)	TTC36 (ENSAPLG00000005568)	KMT2A (ENSAPLG00000004837)	ENSAPLG00000014807	UBE4A (ENSAPLG00000014848)	ENSAPLG00000017742	ENSAPLG00000000691	USP28 (ENSAPLG00000015400)	HTR3A (ENSAPLG00000002673)	ZBTB16 (ENSAPLG00000002963)	RBM7 (ENSAPLG00000005180)	REXO2 (ENSAPLG00000005045)	CADM1 (ENSAPLG00000004955)	PAFAH1B2 (ENSAPLG00000019483) ##22	SIDT2 (ENSAPLG00000015640)	TAGLN (ENSAPLG00000019163)	PCSK7 (ENSAPLG00000014909)	RNF214 (ENSAPLG00000014756)	BACE1 (ENSAPLG00000014327)	CEP164 (ENSAPLG00000013961)	DSCAML1 (ENSAPLG00000012775)	ENSAPLG00000026476	ENSAPLG00000001480	FXYD6 (ENSAPLG00000019226)	TMPRSS13 (ENSAPLG00000012108)	IL10RA (ENSAPLG00000012033)	TMPRSS4 (ENSAPLG00000011505)	SCN2B (ENSAPLG00000011335)	ENSAPLG00000011162
Pink-footed goose	MODERN SPECIES	178	UBE4A (ENSABRG00000013948)	ENSABRG00000013881	ENSABRG00000013873	USP28 (ENSABRG00000013830)	ENSABRG00000013821	ZBTB16 (ENSABRG00000013814)	RBM7 (ENSABRG00000013808)	REXO2 (ENSABRG00000013801)	CADM1 (ENSABRG00000013759)	BUD13 (ENSABRG00000013724)	ZPR1 (ENSABRG00000013712)	APOA4 (ENSABRG00000013708)	ENSABRG00000013706	APOA1 (ENSABRG00000013705)	SIK3 (ENSABRG00000013675)	PAFAH1B2 (ENSABRG00000013648) ##22	SIDT2 (ENSABRG00000013615)	TAGLN (ENSABRG00000013593)	PCSK7 (ENSABRG00000013583)	RNF214 (ENSABRG00000013578)	BACE1 (ENSABRG00000013570)	CEP164 (ENSABRG00000013563)	DSCAML1 (ENSABRG00000013554)	ENSABRG00000013551	ENSABRG00000013547	FXYD6 (ENSABRG00000013545)	TMPRSS13 (ENSABRG00000013530)	ENSABRG00000013515	TMPRSS4 (ENSABRG00000013497)	SCN4B (ENSABRG00000013493)	SCN2B (ENSABRG00000013487)
Neognathae_b	ANCESTRAL SPECIES	29	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Passeriformes	ANCESTRAL SPECIES	28	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c
Passeriformes_d	ANCESTRAL SPECIES	29	ENSGT00390000009300.b	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT01030000234872	ENSGT00970000194092	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847
Flycatcher	MODERN SPECIES	16	ENSFALG00000010017	ENSFALG00000010031	RBM7 (ENSFALG00000023775)	ENSFALG00000010039	REXO2 (ENSFALG00000010044)	CADM1 (ENSFALG00000010059)	ENSFALG00000027006	ENSFALG00000023395	ENSFALG00000022872	BUD13 (ENSFALG00000005527)	ZPR1 (ENSFALG00000005541)	APOA5 (ENSFALG00000027449)	APOA4 (ENSFALG00000005578)	ENSFALG00000005591	SIK3 (ENSFALG00000005608)	PAFAH1B2 (ENSFALG00000005655) ##22	SIDT2 (ENSFALG00000005675)	TAGLN (ENSFALG00000005710)	PCSK7 (ENSFALG00000005742)	RNF214 (ENSFALG00000005789)	ENSFALG00000027100	ENSFALG00000005802	CEP164 (ENSFALG00000005647)	ENSFALG00000026162	DSCAML1 (ENSFALG00000005845)	ENSFALG00000026730	ENSFALG00000023820	FXYD6 (ENSFALG00000028406)	ENSFALG00000005903	IL10RA (ENSFALG00000005912)	TMPRSS4 (ENSFALG00000005926)
Passeriformes_g	ANCESTRAL SPECIES	36	ENSGT00390000009300.b	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT00690000103985	ENSGT01030000235344	ENSGT01030000234872	ENSGT00960000188784	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000155207.a.a
Passeroidea	ANCESTRAL SPECIES	37	ENSGT00390000009300.b	ENSGT01080000257365.b.a.a.a	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00940000155354	ENSGT01030000235344	ENSGT00960000188784	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000164655	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Common canary	MODERN SPECIES	55											BUD13 (ENSSCAG00000004929)	ZPR1 (ENSSCAG00000004945)	ENSSCAG00000004969	APOA1 (ENSSCAG00000004976)	SIK3 (ENSSCAG00000004985)	PAFAH1B2 (ENSSCAG00000004997) ##22	SIDT2 (ENSSCAG00000005058)	TAGLN (ENSSCAG00000005204)	PCSK7 (ENSSCAG00000005260)	RNF214 (ENSSCAG00000005475)	BACE1 (ENSSCAG00000005510)	ENSSCAG00000005642	DSCAML1 (ENSSCAG00000005659)	ENSSCAG00000005674	FXYD6 (ENSSCAG00000005680)	TMPRSS13 (ENSSCAG00000005684)	ENSSCAG00000005692	ENSSCAG00000005698	SCN4B (ENSSCAG00000005704)	SCN2B (ENSSCAG00000005705)	MPZL3 (ENSSCAG00000005716)
Zebra finch	MODERN SPECIES	17	UBE4A (ENSTGUG00000000083)	ENSTGUG00000028719	ENSTGUG00000022685	USP28 (ENSTGUG00000000099)	HTR3A (ENSTGUG00000000107)	ZBTB16 (ENSTGUG00000000116)	RBM7 (ENSTGUG00000000117)	REXO2 (ENSTGUG00000000121)	CADM1 (ENSTGUG00000000128)	BUD13 (ENSTGUG00000000141)	ZPR1 (ENSTGUG00000000143)	ENSTGUG00000028507	APOA4 (ENSTGUG00000024089)	APOA1 (ENSTGUG00000021957)	SIK3 (ENSTGUG00000000153)	PAFAH1B2 (ENSTGUG00000022383) ##22	SIDT2 (ENSTGUG00000026199)	TAGLN (ENSTGUG00000000175)	PCSK7 (ENSTGUG00000000180)	RNF214 (ENSTGUG00000000183)	BACE1 (ENSTGUG00000000184)	CEP164 (ENSTGUG00000000191)	DSCAML1 (ENSTGUG00000000198)	ENSTGUG00000028067	TMPRSS13 (ENSTGUG00000025274)	ENSTGUG00000023210	IL10RA (ENSTGUG00000000217)	ENSTGUG00000000220	SCN4B (ENSTGUG00000000230)	SCN2B (ENSTGUG00000017358)	ENSTGUG00000023037
Medium ground finch	MODERN SPECIES	150	TMEM25 (ENSGFOG00000003922)	ENSGFOG00000003712	UBE4A (ENSGFOG00000003568)	ENSGFOG00000003431	ENSGFOG00000003405	USP28 (ENSGFOG00000003312)	HTR3A (ENSGFOG00000003274)	ZBTB16 (ENSGFOG00000003254)	ENSGFOG00000003238	RBM7 (ENSGFOG00000003182)	REXO2 (ENSGFOG00000003114)	CADM1 (ENSGFOG00000003077)	BUD13 (ENSGFOG00000003013)	ZPR1 (ENSGFOG00000002979)	SIK3 (ENSGFOG00000002602)	PAFAH1B2 (ENSGFOG00000002548) ##22	TAGLN (ENSGFOG00000002172)	PCSK7 (ENSGFOG00000002154)	RNF214 (ENSGFOG00000002144)	BACE1 (ENSGFOG00000002091)	CEP164 (ENSGFOG00000002041)	DSCAML1 (ENSGFOG00000002014)	ENSGFOG00000013113	ENSGFOG00000013110	ENSGFOG00000013107	ENSGFOG00000013105	IL10RA (ENSGFOG00000013098)	ENSGFOG00000013052	SCN4B (ENSGFOG00000013044)	SCN2B (ENSGFOG00000013042)	MPZL3 (ENSGFOG00000013031)
Great tit	MODERN SPECIES	16	UBE4A (ENSPMJG00000007625)	ENSPMJG00000007628	ENSPMJG00000007629	USP28 (ENSPMJG00000007631)	HTR3A (ENSPMJG00000007637)	ZBTB16 (ENSPMJG00000007674)	RBM7 (ENSPMJG00000007675)	REXO2 (ENSPMJG00000007676)	CADM1 (ENSPMJG00000007708)	BUD13 (ENSPMJG00000007712)	ZPR1 (ENSPMJG00000007714)	APOA4 (ENSPMJG00000007726)	ENSPMJG00000007728	APOA1 (ENSPMJG00000007732)	SIK3 (ENSPMJG00000007740)	PAFAH1B2 (ENSPMJG00000007746) ##22	PCSK7 (ENSPMJG00000007752)	SIDT2 (ENSPMJG00000007758)	TAGLN (ENSPMJG00000007767)	RNF214 (ENSPMJG00000007772)	BACE1 (ENSPMJG00000007994)	CEP164 (ENSPMJG00000008002)	DSCAML1 (ENSPMJG00000008013)	ENSPMJG00000008516	FXYD6 (ENSPMJG00000008518)	TMPRSS13 (ENSPMJG00000008519)	IL10RA (ENSPMJG00000008521)	TMPRSS4 (ENSPMJG00000008525)	SCN4B (ENSPMJG00000008529)	SCN2B (ENSPMJG00000008530)	ENSPMJG00000008531
Neognathae_c	ANCESTRAL SPECIES	32	ENSGT00940000161922.i.a	ENSGT00940000157670	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT01060000249236	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000164655	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Kakapo	MODERN SPECIES	7	ENSSHBG00005018726	USP28 (ENSSHBG00005018741)	HTR3A (ENSSHBG00005018780)	ZBTB16 (ENSSHBG00005018786)	ENSSHBG00005018789	RBM7 (ENSSHBG00005018794)	REXO2 (ENSSHBG00005018796)	CADM1 (ENSSHBG00005018803)	BUD13 (ENSSHBG00005018812)	ZPR1 (ENSSHBG00005018822)	APOA5 (ENSSHBG00005018831)	APOA4 (ENSSHBG00005018834)	ENSSHBG00005018838	APOA1 (ENSSHBG00005018847)	SIK3 (ENSSHBG00005018907)	PAFAH1B2 (ENSSHBG00005019154) ##22	SIDT2 (ENSSHBG00005019169)	TAGLN (ENSSHBG00005019194)	PCSK7 (ENSSHBG00005019200)	RNF214 (ENSSHBG00005019209)	BACE1 (ENSSHBG00005019217)	CEP164 (ENSSHBG00005019225)	ENSSHBG00005019234	DSCAML1 (ENSSHBG00005019260)	ENSSHBG00005019279	FXYD6 (ENSSHBG00005019281)	ENSSHBG00005019283	IL10RA (ENSSHBG00005019287)	ENSSHBG00005019304	SCN4B (ENSSHBG00005019311)	SCN2B (ENSSHBG00005019313)
Golden eagle	MODERN SPECIES	24	ENSACCG00020006941	ENSACCG00020006950	USP28 (ENSACCG00020006987)	HTR3A (ENSACCG00020007040)	ZBTB16 (ENSACCG00020007058)	RBM7 (ENSACCG00020007104)	REXO2 (ENSACCG00020007113)	CADM1 (ENSACCG00020007132)	BUD13 (ENSACCG00020007150)	ZPR1 (ENSACCG00020007160)	APOA5 (ENSACCG00020007173)	APOA4 (ENSACCG00020007184)	ENSACCG00020007192	APOA1 (ENSACCG00020007201)	SIK3 (ENSACCG00020007228)	PAFAH1B2 (ENSACCG00020007265) ##22	SIDT2 (ENSACCG00020004520)	TAGLN (ENSACCG00020004562)	PCSK7 (ENSACCG00020004569)	RNF214 (ENSACCG00020004597)	BACE1 (ENSACCG00020004629)	CEP164 (ENSACCG00020004659)	DSCAML1 (ENSACCG00020004740)	ENSACCG00020004786	FXYD6 (ENSACCG00020004798)	TMPRSS13 (ENSACCG00020004808)	ENSACCG00020004817	ENSACCG00020004847	SCN2B (ENSACCG00020004875)	ENSACCG00020004895	MPZL3 (ENSACCG00020004916)
African ostrich	MODERN SPECIES	441	IFT46 (ENSSCUG00000010430)	KMT2A (ENSSCUG00000010432)	ENSSCUG00000010437	UBE4A (ENSSCUG00000010438)	ENSSCUG00000010441	ENSSCUG00000010442	USP28 (ENSSCUG00000010446)	ZBTB16 (ENSSCUG00000010451)	RBM7 (ENSSCUG00000010453)	REXO2 (ENSSCUG00000010455)	CADM1 (ENSSCUG00000010460)	BUD13 (ENSSCUG00000010464)	ZPR1 (ENSSCUG00000010472)	APOA1 (ENSSCUG00000010476)	SIK3 (ENSSCUG00000010479)	PAFAH1B2 (ENSSCUG00000010486) ##22	SIDT2 (ENSSCUG00000010491)	PCSK7 (ENSSCUG00000010496)	RNF214 (ENSSCUG00000010500)	BACE1 (ENSSCUG00000010506)	CEP164 (ENSSCUG00000010512)	ENSSCUG00000010517	ENSSCUG00000010518
Australian saltwater crocodile	MODERN SPECIES	4								CADM1 (ENSCPRG00005000794)	BUD13 (ENSCPRG00005000781)	ZPR1 (ENSCPRG00005000771)	ENSCPRG00005000766	APOA4 (ENSCPRG00005000764)	ENSCPRG00005000760	APOA1 (ENSCPRG00005000749)	SIK3 (ENSCPRG00005000728)	PAFAH1B2 (ENSCPRG00005000718) ##22	SIDT2 (ENSCPRG00005000699)	TAGLN (ENSCPRG00005000675)	PCSK7 (ENSCPRG00005000660)	RNF214 (ENSCPRG00005000624)	BACE1 (ENSCPRG00005000618)	CEP164 (ENSCPRG00005000558)	DSCAML1 (ENSCPRG00005000478)	ENSCPRG00005000455	ENSCPRG00005000451	TMPRSS13 (ENSCPRG00005000393)	ENSCPRG00005000379	TMPRSS4 (ENSCPRG00005000323)	SCN4B (ENSCPRG00005000303)	SCN2B (ENSCPRG00005000300)	MPZL3 (ENSCPRG00005000294)
Cryptodira	ANCESTRAL SPECIES	32	ENSGT00940000154616.b	ENSGT00390000011708.a.b.d.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00960000189567	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Testudinoidea	ANCESTRAL SPECIES	29	ENSGT00940000157705.l	ENSGT00940000154616.b	ENSGT00390000011708.a.b.d.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
Emydidae	ANCESTRAL SPECIES	42	ENSGT00940000154616.b	ENSGT00390000011708.a.b.d.b	ENSGT00390000011708.a.a.a	ENSGT00990000204269	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00950000182866.D.c	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00900000143310	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT01030000235344	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a
painted turtle	MODERN SPECIES	2430	RRAGD (ENSCPBG00000019927)	ANKRD6 (ENSCPBG00000019933)	LYRM2 (ENSCPBG00000020025)	MDN1 (ENSCPBG00000020104)	CASP8AP2 (ENSCPBG00000020228)	GJA10 (ENSCPBG00000020232)	BACH2 (ENSCPBG00000020234)	MAP3K7 (ENSCPBG00000020253)	BUD13 (ENSCPBG00000020276)	ZPR1 (ENSCPBG00000020286)	APOA5 (ENSCPBG00000020291)	ENSCPBG00000020297	APOA4 (ENSCPBG00000020299)	APOA1 (ENSCPBG00000020301)	SIK3 (ENSCPBG00000020309)	PAFAH1B2 (ENSCPBG00000020324) ##22	SIDT2 (ENSCPBG00000020333)	ENSCPBG00000020361	TAGLN (ENSCPBG00000020364)	PCSK7 (ENSCPBG00000020365)	RNF214 (ENSCPBG00000020378)	BACE1 (ENSCPBG00000020486)	CEP164 (ENSCPBG00000020780)	ENSCPBG00000020800	DSCAML1 (ENSCPBG00000020817)	ENSCPBG00000020847	FXYD6 (ENSCPBG00000020852)	TMPRSS13 (ENSCPBG00000020855)	IL10RA (ENSCPBG00000020857)	TMPRSS4 (ENSCPBG00000020861)	SCN4B (ENSCPBG00000020865)
Three-toed box turtle	MODERN SPECIES	167	ZBTB16 (ENSTMTG00000005531)	ENSTMTG00000005554	ENSTMTG00000005620	ENSTMTG00000005643	RBM7 (ENSTMTG00000005650)	REXO2 (ENSTMTG00000005665)	CADM1 (ENSTMTG00000005682)	BUD13 (ENSTMTG00000005710)	ZPR1 (ENSTMTG00000005855)	APOA5 (ENSTMTG00000006204)	APOA4 (ENSTMTG00000006223)	ENSTMTG00000006235	ENSTMTG00000006254	APOA1 (ENSTMTG00000006269)	SIK3 (ENSTMTG00000006288)	PAFAH1B2 (ENSTMTG00000006370) ##22	SIDT2 (ENSTMTG00000006387)	ENSTMTG00000006468	TAGLN (ENSTMTG00000006481)	PCSK7 (ENSTMTG00000006494)	RNF214 (ENSTMTG00000006525)	BACE1 (ENSTMTG00000006574)	CEP164 (ENSTMTG00000006599)	DSCAML1 (ENSTMTG00000006628)	ENSTMTG00000006801	FXYD6 (ENSTMTG00000006819)	TMPRSS13 (ENSTMTG00000006845)	IL10RA (ENSTMTG00000006984)	TMPRSS4 (ENSTMTG00000007025)	SCN4B (ENSTMTG00000007104)	SCN2B (ENSTMTG00000007119)
Testudinidae	ANCESTRAL SPECIES	35	ENSGT00390000011708.a.b.d.b	ENSGT00390000011708.a.b.d.a.b	ENSGT00390000011708.a.a.b	ENSGT00390000011708.a.a.a	ENSGT00870000136493.d	ENSGT00390000009255	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00900000143310	ENSGT00990000207428	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT01020000230389.a.a.a	ENSGT01030000234556.b.b.c	ENSGT01030000234556.b.a	ENSGT00440000034341
Goode s thornscrub tortoise	MODERN SPECIES	10	ENSGEVG00005018281	ENSGEVG00005018502	ENSGEVG00005018586	RBM7 (ENSGEVG00005018641)	ENSGEVG00005018669	ENSGEVG00005018752	CADM1 (ENSGEVG00005018995)	BUD13 (ENSGEVG00005019424)	ZPR1 (ENSGEVG00005019985)	APOA5 (ENSGEVG00005020088)	APOA4 (ENSGEVG00005020116)	ENSGEVG00005020134	ENSGEVG00005020139	APOA1 (ENSGEVG00005020149)	SIK3 (ENSGEVG00005020170)	PAFAH1B2 (ENSGEVG00005020192) ##22	SIDT2 (ENSGEVG00005020206)	ENSGEVG00005020231	TAGLN (ENSGEVG00005020278)	PCSK7 (ENSGEVG00005020285)	RNF214 (ENSGEVG00005020302)	BACE1 (ENSGEVG00005020322)	CEP164 (ENSGEVG00005020357)	ENSGEVG00005020395	DSCAML1 (ENSGEVG00005020411)	ENSGEVG00005020509	FXYD6 (ENSGEVG00005020513)	TMPRSS13 (ENSGEVG00005020521)	ENSGEVG00005020532	TMPRSS4 (ENSGEVG00005020545)	SCN4B (ENSGEVG00005020570)
Abingdon island giant tortoise	MODERN SPECIES	1932	ENSCABG00000008765	ENSCABG00000008762	ENSCABG00000008761	RBM7 (ENSCABG00000008760)	REXO2 (ENSCABG00000008759)	CADM1 (ENSCABG00000008758)	ENSCABG00000008757	BUD13 (ENSCABG00000008755)	ZPR1 (ENSCABG00000008752)	ENSCABG00000008751	ENSCABG00000008750	APOA4 (ENSCABG00000008747)	ENSCABG00000008746	APOA1 (ENSCABG00000008745)	SIK3 (ENSCABG00000008744)	PAFAH1B2 (ENSCABG00000008742) ##22	SIDT2 (ENSCABG00000008708)	ENSCABG00000008677	TAGLN (ENSCABG00000008676)	PCSK7 (ENSCABG00000008674)	RNF214 (ENSCABG00000008669)	BACE1 (ENSCABG00000008656)	DSCAML1 (ENSCABG00000008643)
Chinese turtle	MODERN SPECIES	977			ENSPSIG00000005338	RBM7 (ENSPSIG00000005301)	REXO2 (ENSPSIG00000005151)	CADM1 (ENSPSIG00000014138)	ENSPSIG00000013983	ENSPSIG00000000607	BUD13 (ENSPSIG00000013803)	APOA5 (ENSPSIG00000013369)	APOA4 (ENSPSIG00000013344)	ZPR1 (ENSPSIG00000012969)	ENSPSIG00000012876	APOA1 (ENSPSIG00000011996)	SIK3 (ENSPSIG00000009346)	PAFAH1B2 (ENSPSIG00000008523) ##22
Anura	ANCESTRAL SPECIES	70	ENSGT00940000156445	ENSGT00390000001844.a.b	ENSGT00940000166624	ENSGT00950000182952.A.a	ENSGT00940000166045.f	ENSGT00940000166045.e	ENSGT00390000017499	ENSGT00390000000586	ENSGT00940000156093	ENSGT00390000014500	ENSGT00390000005306	ENSGT00950000182929.D	ENSGT00950000182929.C	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c.b	ENSGT00940000155162.n	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00950000183078.b.a.b	ENSGT00390000009562	ENSGT00940000155354	ENSGT00940000153062.A.b	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00510000048847	ENSGT00940000158231	ENSGT00940000160503	ENSGT00940000155131
Leishan spiny toad	MODERN SPECIES	2	POU2AF2 (ENSLLEG00000009413)	ENSLLEG00000009370	CADM1 (ENSLLEG00000008667)	ENSLLEG00000008557	ENSLLEG00000008515	ENSLLEG00000031112	ENSLLEG00000031111	ZPR1 (ENSLLEG00000031109)	ENSLLEG00000031108	ENSLLEG00000031107	APOA5 (ENSLLEG00000031104)	ENSLLEG00000031101	ENSLLEG00000031099	APOA1 (ENSLLEG00000031098)	SIK3 (ENSLLEG00000031090)	PAFAH1B2 (ENSLLEG00000031087) ##22	SIDT2 (ENSLLEG00000031058)	ENSLLEG00000031037	TAGLN (ENSLLEG00000031033)	ENSLLEG00000031029	DSCAML1 (ENSLLEG00000031006)	ENSLLEG00000030979	FXYD6 (ENSLLEG00000030954)	TMPRSS13 (ENSLLEG00000030936)	ENSLLEG00000030932	ENSLLEG00000030930	ENSLLEG00000030923	ENSLLEG00000030918	ENSLLEG00000030894	SCN4B (ENSLLEG00000030874)	ENSLLEG00000030865
Frog	MODERN SPECIES	7	ENSXETG00000048028	pou2af1 (ENSXETG00000010155)	c11orf53 (ENSXETG00000030620)	ENSXETG00000038233	ENSXETG00000048656	ENSXETG00000048572	cadm1 (ENSXETG00000015391)	ENSXETG00000046542	bud13 (ENSXETG00000003767)	zpr1 (ENSXETG00000003765)	apoa5 (ENSXETG00000038088)	thra (ENSXETG00000003764)	XB5857568 [provisional:apoa1] (ENSXETG00000033423)	apoa1 (ENSXETG00000003763)	sik3 (ENSXETG00000003762)	pafah1b2 (ENSXETG00000003761) ##22	sidt2 (ENSXETG00000003759)	tagln (ENSXETG00000003757)	pcsk7 (ENSXETG00000003755)	rnf214 (ENSXETG00000003750)	bace1 (ENSXETG00000003749)	cep164 (ENSXETG00000003742)	ENSXETG00000038170	dscaml1 (ENSXETG00000003741)	fxyd2 (ENSXETG00000034242)	fxyd6 (ENSXETG00000033631)	tmprss13 (ENSXETG00000010125)	il10ra (ENSXETG00000038848)	tmprss4 (ENSXETG00000010124)	scn4b (ENSXETG00000010123)	scn2b (ENSXETG00000010122)
Coelacanth	MODERN SPECIES	232	ENSLACG00000018888	ENSLACG00000018884	ENSLACG00000018871	ENSLACG00000018865	ENSLACG00000018848	BTG4 (ENSLACG00000018845)	LAYN (ENSLACG00000018833)	SIK2 (ENSLACG00000018815)	PPP2R1B (ENSLACG00000018805)	ALG9 (ENSLACG00000018781)	FDXACB1 (ENSLACG00000018780)	CFAP68 (ENSLACG00000018779)	CRYAB (ENSLACG00000018777)	HSPB2 (ENSLACG00000018775)	DIXDC1 (ENSLACG00000018755)	PAFAH1B2 (ENSLACG00000018749) ##22	SIDT2 (ENSLACG00000018730)	ENSLACG00000018724	ENSLACG00000018720	ENSLACG00000018712	TAGLN (ENSLACG00000018702)	PCSK7 (ENSLACG00000018680)	SCN2B (ENSLACG00000018664)	SCN4B (ENSLACG00000018644)	ENSLACG00000018636	HTR3A (ENSLACG00000018602)	HTR3B (ENSLACG00000018595)	USP28 (ENSLACG00000018575)	ENSLACG00000018566	ZW10 (ENSLACG00000018547)	TMPRSS5 (ENSLACG00000018536)
Actinopterygii	ANCESTRAL SPECIES	207													ENSGT00940000163374	ENSGT00950000182929.A	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c	ENSGT00940000163520.A.b	ENSGT00940000163520.B	ENSGT00940000155162	ENSGT00940000157676	ENSGT00940000159470	ENSGT00940000157786	ENSGT00530000063764.b	ENSGT00390000011424	ENSGT00870000136508.c.a	ENSGT00660000097129	ENSGT00940000157853	ENSGT00940000159493	ENSGT00960000193219	ENSGT00390000009300.b
Neopterygii	ANCESTRAL SPECIES	546															ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c
Osteoglossocephalai	ANCESTRAL SPECIES	82	ENSGT00940000159197	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00940000155207.b	ENSGT00510000054245	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.a.a	ENSGT01030000234556.b.b.b	ENSGT01030000234556.b.a	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00730000111885	ENSGT00940000153312.A	ENSGT01080000257333.B	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c
Osteoglossiformes	ANCESTRAL SPECIES	289	ENSGT00940000155354.a	ENSGT00940000176207	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00940000155207.b	ENSGT00510000054245	ENSGT00940000155207.a.a	ENSGT01030000234556.b.b.a.a	ENSGT01030000234556.b.a	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00730000111885	ENSGT00940000153312.A	ENSGT01080000257333.B	ENSGT00940000157259	ENSGT00950000183199.a.a ##22	ENSGT00390000010091.c
Asian bonytongue	MODERN SPECIES	1	DSCAML1 (ENSSFOG00015007641)	ENSSFOG00015032566	fxyd6 (ENSSFOG00015007731)	TMPRSS13 (ENSSFOG00015028117)	tmprss13b (ENSSFOG00015007782)	il10ra (ENSSFOG00015007802)	ENSSFOG00015007845	scn4ba (ENSSFOG00015007889)	scn2b (ENSSFOG00015029952)	MPZL3 (ENSSFOG00015029129)	MPZL2 (ENSSFOG00015007994)	ENSSFOG00015008054	CD3D (ENSSFOG00015008066)	TMEM25 (ENSSFOG00015008088)	SIK3 (ENSSFOG00015008111)	pafah1b2 (ENSSFOG00015008172) ##22	SIDT2 (ENSSFOG00015008183)	ENSSFOG00015008260	GRAMD1B (ENSSFOG00015008307)	ENSSFOG00015008431	rbm7 (ENSSFOG00015028703)	BARX2 (ENSSFOG00015029946)	KIRREL3 (ENSSFOG00015022386)	ENSSFOG00015030977	smtla (ENSSFOG00015008616)	ets1 (ENSSFOG00015024540)	ENSSFOG00015032498	fli1 (ENSSFOG00015031816)	kcnj1a.6 (ENSSFOG00015008778)	KCNJ5 (ENSSFOG00015008783)	ENSSFOG00015008807
P. kingsleyae	MODERN SPECIES	282			ENSPKIG00000025217	fxyd6 (ENSPKIG00000025222)	tmprss13a (ENSPKIG00000025227)	il10ra (ENSPKIG00000025235)	ENSPKIG00000025247	scn4ba (ENSPKIG00000025258)	scn2b (ENSPKIG00000025265)	MPZL3 (ENSPKIG00000025269)	MPZL2 (ENSPKIG00000025272)	ENSPKIG00000025276	ENSPKIG00000025281	TMEM25 (ENSPKIG00000025658)	SIK3 (ENSPKIG00000025617)	pafah1b2 (ENSPKIG00000025616) ##22	SIDT2 (ENSPKIG00000000026)	ENSPKIG00000000094	ENSPKIG00000000107	nop53 (ENSPKIG00000000127)	GJD2 (ENSPKIG00000000153)	nfkbib (ENSPKIG00000000163)	psma6l (ENSPKIG00000000186)	ENSPKIG00000000210	sars2 (ENSPKIG00000000234)	ENSPKIG00000000248	si:dkey-260j18.2 (ENSPKIG00000000266)	slc5a2 (ENSPKIG00000000289)	fbxo46 (ENSPKIG00000000321)	coq8b (ENSPKIG00000000361)	numbl (ENSPKIG00000000430)
Clupeocephala	ANCESTRAL SPECIES	117	ENSGT00940000159485	ENSGT00390000017583	ENSGT00950000183095.a.b.a.b.a	ENSGT00950000183024.a.b.b	ENSGT01100000263537.b.b.c.b	ENSGT00940000162008	ENSGT00940000154390.B	ENSGT00390000009562	ENSGT00940000155354.a	ENSGT00940000176207	ENSGT00940000153062.B	ENSGT00940000159197	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00950000183078.b.a.b	ENSGT00950000182929.A	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j
Euteleosteomorpha	ANCESTRAL SPECIES	133			ENSGT00940000153669.a	ENSGT00940000159074.f	ENSGT00950000183168.D	ENSGT00390000012084	ENSGT00940000153972.A.b	ENSGT00940000168284	ENSGT01030000234981	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000174767	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159656.b	ENSGT00390000012955	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.b	ENSGT00390000007237.s
Acanthomorphata	ANCESTRAL SPECIES	53	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT01030000234981	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a	ENSGT00940000155374.g.a
Euacanthomorphacea	ANCESTRAL SPECIES	19	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT01030000234981	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Percomorphaceae	ANCESTRAL SPECIES	9	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Tiger tail seahorse	MODERN SPECIES	103	fam76b (ENSHCOG00000006041)	mtmr2 (ENSHCOG00000006080)	cwc15 (ENSHCOG00000006089)	plp1b (ENSHCOG00000006198)	nlgn3b (ENSHCOG00000006218)	ENSHCOG00000006225	gria3a (ENSHCOG00000006258)	thoc2 (ENSHCOG00000006276)	ENSHCOG00000006283	ENSHCOG00000006301	myo1ca (ENSHCOG00000006359)	ENSHCOG00000006375	DSCAML1 (ENSHCOG00000006451)	scn4bb (ENSHCOG00000006464)	ENSHCOG00000006471	pafah1b2 (ENSHCOG00000006491) ##22	TAGLN (ENSHCOG00000006505)	gjd1a (ENSHCOG00000006511)	rab6a (ENSHCOG00000006550)	dnajb13 (ENSHCOG00000006570)	ucp3 (ENSHCOG00000006586)	ppme1 (ENSHCOG00000006610)	nectin3b (ENSHCOG00000006615)	rtn2b (ENSHCOG00000006642)	ppm1nb (ENSHCOG00000006662)	ENSHCOG00000006673	ccdc61 (ENSHCOG00000006702)	ENSHCOG00000006712	pls3 (ENSHCOG00000006756)	CNGA2 (ENSHCOG00000006778)	rraga (ENSHCOG00000006819)
Percomorphaceae_B	ANCESTRAL SPECIES	10	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Ovalentaria	ANCESTRAL SPECIES	11	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Atherinomorphae	ANCESTRAL SPECIES	14	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Cyprinodontiformes	ANCESTRAL SPECIES	11	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Aplocheiloidei	ANCESTRAL SPECIES	33	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Mangrove rivulus	MODERN SPECIES	282	cwc15 (ENSKMAG00000011877)	plp1b (ENSKMAG00000011913)	nlgn3b (ENSKMAG00000011940)	ENSKMAG00000011980	ENSKMAG00000012012	gria3a (ENSKMAG00000012049)	thoc2 (ENSKMAG00000012263)	stag2a (ENSKMAG00000012485)	ENSKMAG00000012636	myo1ca (ENSKMAG00000012675)	ENSKMAG00000012774	ENSKMAG00000012845	DSCAML1 (ENSKMAG00000012917)	scn4bb (ENSKMAG00000013044)	ENSKMAG00000013073	pafah1b2 (ENSKMAG00000013088) ##22	TAGLN (ENSKMAG00000013111)	gjd1a (ENSKMAG00000013132)	rab6a (ENSKMAG00000013146)
Turquoise killifish	MODERN SPECIES	1620	cwc15 (ENSNFUG00015014760)	MTMR2 (ENSNFUG00015014810)	FAM76B (ENSNFUG00015014969)	TAF1 (ENSNFUG00015015288)	ENSNFUG00015015642	ENSNFUG00015015653	myo1ca (ENSNFUG00015015697)	ENSNFUG00015015832	ARHGAP35 (ENSNFUG00015015838)	DSCAML1 (ENSNFUG00015015911)	ENSNFUG00015016750	SCN4BB (ENSNFUG00015016755)	MPZL2B (ENSNFUG00015016762)	ENSNFUG00015016765	mmp13a (ENSNFUG00015016769)	pafah1b2 (ENSNFUG00015016867) ##22	ENSNFUG00015016869	Nfu_g_1_005455 (ENSNFUG00015016878)	rab6a (ENSNFUG00015016887)	DNAJB13 (ENSNFUG00015016907)	UCP2 (ENSNFUG00015016922)	ucp3 (ENSNFUG00015016935)	PPME1 (ENSNFUG00015016962)	nectin3b (ENSNFUG00015016977)	rtn2b (ENSNFUG00015016982)	PPM1NB (ENSNFUG00015016986)	ENSNFUG00015016996	ENSNFUG00015017010	ENSNFUG00015017014	ENSNFUG00015017021	CCDC61 (ENSNFUG00015017031)
Cyprinodontoidei	ANCESTRAL SPECIES	5	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
NAME_4	ANCESTRAL SPECIES	5	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Sheepshead minnow	MODERN SPECIES	310												ENSCVAG00000022622	DSCAML1 (ENSCVAG00000022579)	scn4bb (ENSCVAG00000022329)	ENSCVAG00000022299	pafah1b2 (ENSCVAG00000022288) ##22	TAGLN (ENSCVAG00000022274)	gjd1a (ENSCVAG00000022256)	rab6a (ENSCVAG00000022249)	dnajb13 (ENSCVAG00000022210)	ucp2 (ENSCVAG00000022181)	ucp3 (ENSCVAG00000022170)	ppme1 (ENSCVAG00000022154)	ENSCVAG00000022131	nectin3b (ENSCVAG00000022118)	rtn2b (ENSCVAG00000022112)	ppm1nb (ENSCVAG00000022080)	ENSCVAG00000022040	ccdc61 (ENSCVAG00000022006)	ENSCVAG00000000868	ENSCVAG00000021948
Mummichog	MODERN SPECIES	2239	mtmr2 (ENSFHEG00000002300)	cwc15 (ENSFHEG00000002105)	plp1b (ENSFHEG00000002068)	nlgn3b (ENSFHEG00000001936)	ENSFHEG00000001724	gria3a (ENSFHEG00000001714)	thoc2 (ENSFHEG00000001695)	stag2a (ENSFHEG00000001617)	ENSFHEG00000001600	ENSFHEG00000001592	myo1ca (ENSFHEG00000001584)	ENSFHEG00000001565	DSCAML1 (ENSFHEG00000001555)	scn4bb (ENSFHEG00000001529)	ENSFHEG00000001506	pafah1b2 (ENSFHEG00000001497) ##22	TAGLN (ENSFHEG00000001487)	gjd1a (ENSFHEG00000001483)	ENSFHEG00000001477	dnajb13 (ENSFHEG00000001464)	ucp2 (ENSFHEG00000001458)	ucp3 (ENSFHEG00000001452)	ppme1 (ENSFHEG00000001443)	ENSFHEG00000001433	nectin3b (ENSFHEG00000001424)	rtn2b (ENSFHEG00000001415)	ppm1nb (ENSFHEG00000001405)	ENSFHEG00000001400
Poeciliinae	ANCESTRAL SPECIES	17	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Poecilia	ANCESTRAL SPECIES	7	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
NAME_6	ANCESTRAL SPECIES	16							ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00900000143377	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d
Sailfin molly	MODERN SPECIES	1594																pafah1b2 (ENSPLAG00000019492) ##22	TAGLN (ENSPLAG00000019513)	gjd1a (ENSPLAG00000019523)	rab6a (ENSPLAG00000019570)	dnajb13 (ENSPLAG00000019588)	ucp2 (ENSPLAG00000020386)	ucp3 (ENSPLAG00000020434)	ppme1 (ENSPLAG00000020471)	ENSPLAG00000020477	nectin3b (ENSPLAG00000020483)
Amazon molly	MODERN SPECIES	266								thoc2 (ENSPFOG00000019556)	stag2a (ENSPFOG00000019554)	ENSPFOG00000019553	myo1ca (ENSPFOG00000019544)	ENSPFOG00000019539	DSCAML1 (ENSPFOG00000019530)	scn4bb (ENSPFOG00000019521)	ENSPFOG00000019518	pafah1b2 (ENSPFOG00000019515) ##22	TAGLN (ENSPFOG00000019513)	gjd1a (ENSPFOG00000019512)	rab6a (ENSPFOG00000019509)	ucp2 (ENSPFOG00000019497)	dnajb13 (ENSPFOG00000019504)	ucp3 (ENSPFOG00000023273)	ppme1 (ENSPFOG00000019491)	ENSPFOG00000020549	nectin3b (ENSPFOG00000019487)	ENSPFOG00000023643	rtn2b (ENSPFOG00000019484)	ppm1nb (ENSPFOG00000019480)	ENSPFOG00000019475	ccdc61 (ENSPFOG00000019472)	ENSPFOG00000019467
Guppy	MODERN SPECIES	444	mtmr2 (ENSPREG00000021955)	cwc15 (ENSPREG00000021919)	plp1b (ENSPREG00000021894)	nlgn3b (ENSPREG00000021878)	ENSPREG00000021857	gria3a (ENSPREG00000021795)	thoc2 (ENSPREG00000021746)	stag2a (ENSPREG00000021695)	ENSPREG00000021670	ENSPREG00000021663	myo1ca (ENSPREG00000021637)	ENSPREG00000021623	DSCAML1 (ENSPREG00000021594)	scn4bb (ENSPREG00000021578)	ENSPREG00000021555	pafah1b2 (ENSPREG00000021536) ##22	TAGLN (ENSPREG00000021530)	gjd1a (ENSPREG00000021525)	rab6a (ENSPREG00000021505)	dnajb13 (ENSPREG00000021488)	ucp2 (ENSPREG00000021346)	ucp3 (ENSPREG00000021314)	ppme1 (ENSPREG00000021297)	ENSPREG00000021287	nectin3b (ENSPREG00000021279)	rtn2b (ENSPREG00000021273)	ppm1nb (ENSPREG00000021264)	ENSPREG00000021247	ccdc61 (ENSPREG00000021232)	pls3 (ENSPREG00000021205)	CNGA2 (ENSPREG00000021190)
Platyfish	MODERN SPECIES	2	mtmr2 (ENSXMAG00000011459)	cwc15 (ENSXMAG00000011472)	plp1b (ENSXMAG00000011480)	nlgn3b (ENSXMAG00000011486)	ENSXMAG00000011500	gria3a (ENSXMAG00000011526)	thoc2 (ENSXMAG00000011604)	stag2a (ENSXMAG00000011653)	ENSXMAG00000023357	ENSXMAG00000025471	myo1ca (ENSXMAG00000011780)	ENSXMAG00000011850	DSCAML1 (ENSXMAG00000011865)	scn4bb (ENSXMAG00000025714)	mpzl2b (ENSXMAG00000011881)	pafah1b2 (ENSXMAG00000011885) ##22	gjd1a (ENSXMAG00000026829)	rab6a (ENSXMAG00000011903)	dnajb13 (ENSXMAG00000011921)	ucp2 (ENSXMAG00000011949)	ucp3 (ENSXMAG00000011950)	ppme1 (ENSXMAG00000011978)	nectin3b (ENSXMAG00000022318)	rtn2b (ENSXMAG00000021539)	ppm1nb (ENSXMAG00000012008)	ENSXMAG00000012018	ccdc61 (ENSXMAG00000012022)	ENSXMAG00000012039	pls3 (ENSXMAG00000012062)	CNGA2 (ENSXMAG00000028832)	rraga (ENSXMAG00000012105)
Oryzias	ANCESTRAL SPECIES	14	ENSGT00940000159074.f	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Oryzias_b	ANCESTRAL SPECIES	13	ENSGT00940000159074.f	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Indian medaka	MODERN SPECIES	4	fam76b (ENSOMEG00000003741)	mtmr2 (ENSOMEG00000003768)	cwc15 (ENSOMEG00000000650)	plp1b (ENSOMEG00000003810)	nlgn3b (ENSOMEG00000003856)	ENSOMEG00000003890	gria3a (ENSOMEG00000003955)	thoc2 (ENSOMEG00000004006)	stag2a (ENSOMEG00000004103)	ENSOMEG00000004120	myo1ca (ENSOMEG00000004164)	ENSOMEG00000004182	DSCAML1 (ENSOMEG00000004255)	scn4bb (ENSOMEG00000004285)	ENSOMEG00000004295	pafah1b2 (ENSOMEG00000004314) ##22	TAGLN (ENSOMEG00000004330)	gjd1a (ENSOMEG00000004336)	rab6a (ENSOMEG00000004379)	ucp2 (ENSOMEG00000004400)	dnajb13 (ENSOMEG00000004426)	ucp3 (ENSOMEG00000004623)	ppme1 (ENSOMEG00000004752)	ENSOMEG00000004795	nectin3b (ENSOMEG00000004811)	rtn2b (ENSOMEG00000004824)	ppm1nb (ENSOMEG00000004837)	ENSOMEG00000004850	ccdc61 (ENSOMEG00000004892)	ENSOMEG00000004958	pls3 (ENSOMEG00000005011)
Javanese ricefish	MODERN SPECIES	5	fam76b (ENSOJAG00000023878)	mtmr2 (ENSOJAG00000023857)	cwc15 (ENSOJAG00000023849)	plp1b (ENSOJAG00000023847)	nlgn3b (ENSOJAG00000023846)	ENSOJAG00000023843	gria3a (ENSOJAG00000023692)	thoc2 (ENSOJAG00000023355)	stag2a (ENSOJAG00000021770)	ENSOJAG00000021507	myo1ca (ENSOJAG00000020854)	ENSOJAG00000020821	DSCAML1 (ENSOJAG00000020496)	scn4bb (ENSOJAG00000020423)	mpzl2b (ENSOJAG00000020312)	pafah1b2 (ENSOJAG00000020296) ##22	TAGLN (ENSOJAG00000020283)	gjd1a (ENSOJAG00000020277)	rab6a (ENSOJAG00000020251)	dnajb13 (ENSOJAG00000020237)	ucp2 (ENSOJAG00000020229)	ucp3 (ENSOJAG00000020212)	ppme1 (ENSOJAG00000020198)	nectin3b (ENSOJAG00000020196)	rtn2b (ENSOJAG00000020189)	ppm1nb (ENSOJAG00000020181)	ENSOJAG00000020176	ccdc61 (ENSOJAG00000020163)	ENSOJAG00000020080	pls3 (ENSOJAG00000019888)	CNGA2 (ENSOJAG00000019872)
Oryzias_a	ANCESTRAL SPECIES	2	ENSGT00940000159074.f	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000169200	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Chinese medaka	MODERN SPECIES	717	slc6a7 (ENSOSIG00000021273)	taf1 (ENSOSIG00000020607)	fam76b (ENSOSIG00000020562)	mtmr2 (ENSOSIG00000020097)	cwc15 (ENSOSIG00000020056)	plp1b (ENSOSIG00000020049)	gria3a (ENSOSIG00000018174)	thoc2 (ENSOSIG00000015522)	STAG2 (ENSOSIG00000004424)	ENSOSIG00000004201	myo1ca (ENSOSIG00000004047)	ENSOSIG00000004016	DSCAML1 (ENSOSIG00000003589)	scn4bb (ENSOSIG00000003519)	mpzl2b (ENSOSIG00000003505)	pafah1b2 (ENSOSIG00000003494) ##22	TAGLN (ENSOSIG00000003459)	gjd1a (ENSOSIG00000003442)	rab6a (ENSOSIG00000003366)	dnajb13 (ENSOSIG00000003357)	ucp2 (ENSOSIG00000003349)	ucp3 (ENSOSIG00000003345)	ppme1 (ENSOSIG00000003340)	ENSOSIG00000003335	nectin3b (ENSOSIG00000003333)	rtn2b (ENSOSIG00000003329)	ppm1nb (ENSOSIG00000003326)	ENSOSIG00000003324	ccdc61 (ENSOSIG00000003316)	ENSOSIG00000003279	pls3 (ENSOSIG00000000752)
Japanese Medaka HdrR	MODERN SPECIES	5	fam76b (ENSORLG00000008459)	mtmr2 (ENSORLG00000008510)	cwc15 (ENSORLG00000008550)	plp1b (ENSORLG00000008564)	nlgn3b (ENSORLG00000008580)	ENSORLG00000030012	gria3a (ENSORLG00000008662)	thoc2 (ENSORLG00000008692)	stag2a (ENSORLG00000008799)	myo1ca (ENSORLG00000008879)	ENSORLG00000022452	ENSORLG00000008904	DSCAML1 (ENSORLG00000008967)	scn4bb (ENSORLG00000008974)	ENSORLG00000008979	pafah1b2 (ENSORLG00000028668) ##22	ENSORLG00000009005	ENSORLG00000024869	rab6a (ENSORLG00000026197)	dnajb13 (ENSORLG00000009053)	ucp2 (ENSORLG00000024683)	ucp3 (ENSORLG00000009082)	ppme1 (ENSORLG00000009114)	ENSORLG00000009120	nectin3b (ENSORLG00000009130)	rtn2b (ENSORLG00000009139)	ppm1nb (ENSORLG00000009154)	ENSORLG00000009162	ccdc61 (ENSORLG00000009166)	ENSORLG00000009187	pls3 (ENSORLG00000009227)
Ovalentaria_B	ANCESTRAL SPECIES	16	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Pomacentridae	ANCESTRAL SPECIES	10	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159656.b	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Pomacentridae_A	ANCESTRAL SPECIES	3	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284.a	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Amphiprion	ANCESTRAL SPECIES	3	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284.a	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Clown anemonefish	MODERN SPECIES	1868						thoc2 (ENSAOCG00000013305)	stag2a (ENSAOCG00000012888)	ENSAOCG00000012784	ENSAOCG00000012753	ENSAOCG00000012684	myo1ca (ENSAOCG00000012641)	ENSAOCG00000012546	DSCAML1 (ENSAOCG00000012490)	scn4bb (ENSAOCG00000012384)	mpzl2b (ENSAOCG00000012365)	pafah1b2 (ENSAOCG00000012351) ##22	TAGLN (ENSAOCG00000012325)	gjd1a (ENSAOCG00000012306)	rab6a (ENSAOCG00000012277)	dnajb13 (ENSAOCG00000012229)	ucp2 (ENSAOCG00000012200)	ucp3 (ENSAOCG00000012188)	ppme1 (ENSAOCG00000012159)	ENSAOCG00000012094	nectin3b (ENSAOCG00000012052)	rtn2b (ENSAOCG00000012036)
Orange clownfish	MODERN SPECIES	6	cwc15 (ENSAPEG00000004563)	plp1b (ENSAPEG00000004596)	nlgn3b (ENSAPEG00000004606)	ENSAPEG00000004667	gria3a (ENSAPEG00000004695)	thoc2 (ENSAPEG00000004792)	stag2a (ENSAPEG00000005224)	ENSAPEG00000005359	ENSAPEG00000005402	ENSAPEG00000005451	myo1ca (ENSAPEG00000005499)	ENSAPEG00000005618	DSCAML1 (ENSAPEG00000005663)	scn4bb (ENSAPEG00000005758)	mpzl2b (ENSAPEG00000005791)	pafah1b2 (ENSAPEG00000005799) ##22	TAGLN (ENSAPEG00000005820)	gjd1a (ENSAPEG00000005837)	ENSAPEG00000005857	dnajb13 (ENSAPEG00000005908)	ucp2 (ENSAPEG00000005931)	ucp3 (ENSAPEG00000005954)	ppme1 (ENSAPEG00000005978)	ENSAPEG00000006027	nectin3b (ENSAPEG00000006070)	rtn2b (ENSAPEG00000006129)	ppm1nb (ENSAPEG00000006160)	ENSAPEG00000006186	ENSAPEG00000006207	ccdc61 (ENSAPEG00000006300)	ENSAPEG00000006307
Spiny chromis	MODERN SPECIES	1025										myo1ca (ENSAPOG00000017043)	ENSAPOG00000016875	ENSAPOG00000016861	DSCAML1 (ENSAPOG00000016805)	scn4bb (ENSAPOG00000016652)	mpzl2b (ENSAPOG00000016643)	pafah1b2 (ENSAPOG00000016567) ##22	TAGLN (ENSAPOG00000016556)	gjd1a (ENSAPOG00000016522)	ENSAPOG00000016512	dnajb13 (ENSAPOG00000016450)	ucp2 (ENSAPOG00000016418)	ucp3 (ENSAPOG00000016372)
Bicolor damselfish	MODERN SPECIES	881						thoc2 (ENSSPAG00000023593)	ENSSPAG00000023594	stag2a (ENSSPAG00000000163)	ENSSPAG00000000272	ENSSPAG00000000303	myo1ca (ENSSPAG00000000368)	ENSSPAG00000000533	DSCAML1 (ENSSPAG00000000581)	scn4bb (ENSSPAG00000000903)	ENSSPAG00000000968	pafah1b2 (ENSSPAG00000000977) ##22	TAGLN (ENSSPAG00000001012)	gjd1a (ENSSPAG00000001053)	rab6a (ENSSPAG00000001067)	dnajb13 (ENSSPAG00000001088)	ucp2 (ENSSPAG00000001145)	ucp3 (ENSSPAG00000002211)	ppme1 (ENSSPAG00000002240)	ENSSPAG00000002284	nectin3b (ENSSPAG00000002315)	rtn2b (ENSSPAG00000002365)
Cichlidae	ANCESTRAL SPECIES	4	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000171396	ENSGT00940000155902.d
Pseudocrenilabrinae	ANCESTRAL SPECIES	14	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	21	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Haplochromini	ANCESTRAL SPECIES	8	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Burton s mouthbrooder	MODERN SPECIES	316	mtmr2 (ENSHBUG00000003323)	cwc15 (ENSHBUG00000003341)	plp1b (ENSHBUG00000003369)	nlgn3b (ENSHBUG00000003405)	ENSHBUG00000003419	gria3a (ENSHBUG00000003498)	thoc2 (ENSHBUG00000003516)	stag2a (ENSHBUG00000003607)	ENSHBUG00000003614	ENSHBUG00000000083	myo1ca (ENSHBUG00000003717)	ENSHBUG00000003737	DSCAML1 (ENSHBUG00000003809)	scn4bb (ENSHBUG00000003833)	mpzl2b (ENSHBUG00000003915)	pafah1b2 (ENSHBUG00000003932) ##22	TAGLN (ENSHBUG00000003950)	gjd1a (ENSHBUG00000003961)	rab6a (ENSHBUG00000000890)	ucp2 (ENSHBUG00000004013)	dnajb13 (ENSHBUG00000004032)	ucp3 (ENSHBUG00000000101)	ppme1 (ENSHBUG00000004052)	ENSHBUG00000004072	nectin3b (ENSHBUG00000004076)	rtn2b (ENSHBUG00000004083)	ppm1nb (ENSHBUG00000004099)	ENSHBUG00000004115	ccdc61 (ENSHBUG00000004145)	ENSHBUG00000004204	pls3 (ENSHBUG00000004236)
Haplochromini_A	ANCESTRAL SPECIES	6	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
P. nyererei	MODERN SPECIES	359	fam76b (ENSPNYG00000019259)	mtmr2 (ENSPNYG00000019310)	cwc15 (ENSPNYG00000019347)	plp1b (ENSPNYG00000019379)	nlgn3b (ENSPNYG00000019538)	gria3a (ENSPNYG00000019554)	thoc2 (ENSPNYG00000019622)	stag2a (ENSPNYG00000020003)	ENSPNYG00000020127	ENSPNYG00000020159	myo1ca (ENSPNYG00000020176)	ENSPNYG00000020243	DSCAML1 (ENSPNYG00000020278)	scn4bb (ENSPNYG00000020403)	mpzl2b (ENSPNYG00000020433)	pafah1b2 (ENSPNYG00000020509) ##22	TAGLN (ENSPNYG00000020531)	gjd1a (ENSPNYG00000020544)	rab6a (ENSPNYG00000020556)	dnajb13 (ENSPNYG00000020593)	ucp2 (ENSPNYG00000020671)	ucp3 (ENSPNYG00000020691)	ppme1 (ENSPNYG00000020708)	ENSPNYG00000020721	nectin3b (ENSPNYG00000020746)	rtn2b (ENSPNYG00000020801)	ppm1nb (ENSPNYG00000020811)	ENSPNYG00000020830	ENSPNYG00000020844	ENSPNYG00000020871	pls3 (ENSPNYG00000020948)
Haplochromini_B	ANCESTRAL SPECIES	26	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1092	mtmr2 (ENSMZEG00005015943)	cwc15 (ENSMZEG00005015901)	plp1b (ENSMZEG00005015889)	ENSMZEG00005015879	ENSMZEG00005015869	gria3a (ENSMZEG00005015863)	thoc2 (ENSMZEG00005015842)	stag2a (ENSMZEG00005015803)	ENSMZEG00005015782	ENSMZEG00005015769	myo1ca (ENSMZEG00005015703)	ENSMZEG00005015663	DSCAML1 (ENSMZEG00005015615)	scn4bb (ENSMZEG00005015588)	mpzl2b (ENSMZEG00005015579)	pafah1b2 (ENSMZEG00005015552) ##22	TAGLN (ENSMZEG00005015246)	ENSMZEG00005015197	npas2 (ENSMZEG00005015174)	BRWD3 (ENSMZEG00005015137)	ENSMZEG00005015106	chmp1b (ENSMZEG00005015095)	rraga (ENSMZEG00005015085)	CNGA2 (ENSMZEG00005014084)	pls3 (ENSMZEG00005014040)	ENSMZEG00005013999	ccdc61 (ENSMZEG00005013984)	cyb561d1 (ENSMZEG00005013976)	aspa (ENSMZEG00005013967)	ABR (ENSMZEG00005013860)	ENSMZEG00005013840
Zebra mbuna	MODERN SPECIES	272																pafah1b2 (ENSMZEG00005023174) ##22	TAGLN (ENSMZEG00005023176)	gjd1a (ENSMZEG00005023179)	rab6a (ENSMZEG00005023181)	dnajb13 (ENSMZEG00005023185)	ucp2 (ENSMZEG00005023188)	ucp3 (ENSMZEG00005023191)	ppme1 (ENSMZEG00005023196)	ENSMZEG00005023200	nectin3b (ENSMZEG00005023201)	rtn2b (ENSMZEG00005023202)	ppm1nb (ENSMZEG00005023211)	ENSMZEG00005023212	ccdc61 (ENSMZEG00005023214)
Eastern happy	MODERN SPECIES	1	mtmr2 (ENSACLG00000012515)	cwc15 (ENSACLG00000012474)	plp1b (ENSACLG00000012431)	nlgn3b (ENSACLG00000012391)	ENSACLG00000012316	gria3a (ENSACLG00000012137)	thoc2 (ENSACLG00000012036)	stag2a (ENSACLG00000011838)	ENSACLG00000011820	ENSACLG00000011806	myo1ca (ENSACLG00000011727)	ENSACLG00000011653	DSCAML1 (ENSACLG00000011552)	scn4bb (ENSACLG00000011539)	mpzl2b (ENSACLG00000011530)	pafah1b2 (ENSACLG00000011518) ##22	TAGLN (ENSACLG00000011510)	gjd1a (ENSACLG00000011504)	rab6a (ENSACLG00000011488)	dnajb13 (ENSACLG00000011483)	ucp2 (ENSACLG00000011486)	ucp3 (ENSACLG00000011474)	ppme1 (ENSACLG00000011448)	nectin3b (ENSACLG00000011444)	ENSACLG00000011440	rtn2b (ENSACLG00000011424)	ENSACLG00000011197	ppm1nb (ENSACLG00000011167)	ccdc61 (ENSACLG00000011115)	ENSACLG00000011009	pls3 (ENSACLG00000010949)
Lyretail cichlid	MODERN SPECIES	378	fam76b (ENSNBRG00000018568)	mtmr2 (ENSNBRG00000018344)	cwc15 (ENSNBRG00000018245)	plp1b (ENSNBRG00000018224)	nlgn3b (ENSNBRG00000018200)	gria3a (ENSNBRG00000018156)	thoc2 (ENSNBRG00000018089)	stag2a (ENSNBRG00000017994)	ENSNBRG00000017959	ENSNBRG00000017936	myo1ca (ENSNBRG00000017190)	ENSNBRG00000016938	DSCAML1 (ENSNBRG00000016854)	scn4bb (ENSNBRG00000016823)	mpzl2b (ENSNBRG00000016816)	pafah1b2 (ENSNBRG00000016790) ##22	TAGLN (ENSNBRG00000016768)	gjd1a (ENSNBRG00000016753)	rab6a (ENSNBRG00000016716)	dnajb13 (ENSNBRG00000016628)	ucp2 (ENSNBRG00000016602)	ucp3 (ENSNBRG00000016592)	ppme1 (ENSNBRG00000016545)	ENSNBRG00000016503	nectin3b (ENSNBRG00000016475)	rtn2b (ENSNBRG00000016458)	ENSNBRG00000016297	pls3 (ENSNBRG00000016222)	CNGA2 (ENSNBRG00000016189)	rraga (ENSNBRG00000016166)	chmp1b (ENSNBRG00000016154)
Nile tilapia	MODERN SPECIES	1	cwc15 (ENSONIG00000004326)	plp1b (ENSONIG00000004332)	nlgn3b (ENSONIG00000004337)	ENSONIG00000004339	gria3a (ENSONIG00000004341)	thoc2 (ENSONIG00000004348)	stag2a (ENSONIG00000004356)	ENSONIG00000041398	ENSONIG00000004362	ENSONIG00000033873	myo1ca (ENSONIG00000004365)	ENSONIG00000004374	DSCAML1 (ENSONIG00000004375)	scn4bb (ENSONIG00000004384)	mpzl2b (ENSONIG00000037115)	pafah1b2 (ENSONIG00000028748) ##22	TAGLN (ENSONIG00000035930)	gjd1a (ENSONIG00000004392)	rab6a (ENSONIG00000004394)	ucp2 (ENSONIG00000042368)	dnajb13 (ENSONIG00000004401)	ucp3 (ENSONIG00000038046)	ppme1 (ENSONIG00000004406)	nectin3b (ENSONIG00000027285)	rtn2b (ENSONIG00000004413)	ppm1nb (ENSONIG00000004417)	ENSONIG00000037494	ccdc61 (ENSONIG00000004422)	ENSONIG00000004427	pls3 (ENSONIG00000004433)	CNGA2 (ENSONIG00000004443)
Midas cichlid	MODERN SPECIES	27	fam76b (ENSACIG00000015306)	mtmr2 (ENSACIG00000015272)	cwc15 (ENSACIG00000015258)	plp1b (ENSACIG00000015178)	nlgn3b (ENSACIG00000015158)	gria3a (ENSACIG00000015124)	thoc2 (ENSACIG00000015022)	stag2a (ENSACIG00000014945)	ENSACIG00000014906	ENSACIG00000014878	myo1ca (ENSACIG00000014826)	ENSACIG00000014808	DSCAML1 (ENSACIG00000014735)	scn4bb (ENSACIG00000014699)	mpzl2b (ENSACIG00000014665)	pafah1b2 (ENSACIG00000014648) ##22	TAGLN (ENSACIG00000014637)	gjd1a (ENSACIG00000014629)	rab6a (ENSACIG00000014605)	dnajb13 (ENSACIG00000014587)	ucp2 (ENSACIG00000014571)	ucp3 (ENSACIG00000013999)	ppme1 (ENSACIG00000013932)	ENSACIG00000013918	nectin3b (ENSACIG00000013905)	rtn2b (ENSACIG00000013878)	ppm1nb (ENSACIG00000013863)	ENSACIG00000013855	ENSACIG00000013780	ENSACIG00000013688	PLS3 (ENSACIG00000013653)
Percomorphaceae_C	ANCESTRAL SPECIES	10	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Percomorphaceae_D	ANCESTRAL SPECIES	16	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Carangaria	ANCESTRAL SPECIES	16	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Carangaria_A	ANCESTRAL SPECIES	8	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Seriola	ANCESTRAL SPECIES	2	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Greater amberjack	MODERN SPECIES	139	mtmr2 (ENSSDUG00000012613)	cwc15 (ENSSDUG00000012642)	plp1b (ENSSDUG00000012654)	nlgn3b (ENSSDUG00000012685)	ENSSDUG00000012736	gria3a (ENSSDUG00000012775)	thoc2 (ENSSDUG00000012815)	stag2a (ENSSDUG00000012920)	ENSSDUG00000012991	ENSSDUG00000013020	myo1ca (ENSSDUG00000013060)	ENSSDUG00000013268	DSCAML1 (ENSSDUG00000013319)	scn4bb (ENSSDUG00000013394)	mpzl2b (ENSSDUG00000013409)	pafah1b2 (ENSSDUG00000013446) ##22	TAGLN (ENSSDUG00000013467)	gjd1a (ENSSDUG00000013482)	rab6a (ENSSDUG00000013496)	dnajb13 (ENSSDUG00000013541)	ucp2 (ENSSDUG00000013568)	ucp3 (ENSSDUG00000013609)	ppme1 (ENSSDUG00000014109)	ENSSDUG00000014168	ENSSDUG00000014182	nectin3b (ENSSDUG00000014199)	rtn2b (ENSSDUG00000014219)	ppm1nb (ENSSDUG00000014230)	ENSSDUG00000014243	ENSSDUG00000014265	ccdc61 (ENSSDUG00000014355)
Yellowtail amberjack	MODERN SPECIES	2686	mtmr2 (ENSSLDG00000016322)	cwc15 (ENSSLDG00000016292)	plp1b (ENSSLDG00000016090)	nlgn3b (ENSSLDG00000015977)	ENSSLDG00000015931	gria3a (ENSSLDG00000015868)	thoc2 (ENSSLDG00000015816)	stag2a (ENSSLDG00000015743)	ENSSLDG00000015715	ENSSLDG00000015700	myo1ca (ENSSLDG00000015641)	ENSSLDG00000015609	DSCAML1 (ENSSLDG00000015500)	scn4bb (ENSSLDG00000015441)	mpzl2b (ENSSLDG00000015411)	pafah1b2 (ENSSLDG00000015386) ##22	TAGLN (ENSSLDG00000015357)	gjd1a (ENSSLDG00000015337)	rab6a (ENSSLDG00000015289)	dnajb13 (ENSSLDG00000015253)	ucp2 (ENSSLDG00000015224)	ucp3 (ENSSLDG00000015160)	ppme1 (ENSSLDG00000015120)	nectin3b (ENSSLDG00000015093)	rtn2b (ENSSLDG00000015066)	ppm1nb (ENSSLDG00000015047)	ENSSLDG00000015015	ccdc61 (ENSSLDG00000014972)	ENSSLDG00000014908	pls3 (ENSSLDG00000014867)	CNGA2 (ENSSLDG00000014847)
Barramundi perch	MODERN SPECIES	94	mtmr2 (ENSLCAG00010025263)	cwc15 (ENSLCAG00010025177)	plp1b (ENSLCAG00010025159)	nlgn3b (ENSLCAG00010025150)	ENSLCAG00010025137	gria3a (ENSLCAG00010024948)	thoc2 (ENSLCAG00010024835)	stag2a (ENSLCAG00010024440)	ENSLCAG00010024274	ENSLCAG00010024269	myo1ca (ENSLCAG00010024020)	ENSLCAG00010023884	DSCAML1 (ENSLCAG00010023876)	scn4bb (ENSLCAG00010023869)	mpzl2b (ENSLCAG00010023866)	pafah1b2 (ENSLCAG00010023862) ##22	TAGLN (ENSLCAG00010023860)	ENSLCAG00010023856	gjd1a (ENSLCAG00010023854)	rab6a (ENSLCAG00010023841)	dnajb13 (ENSLCAG00010023834)	ucp2 (ENSLCAG00010023829)	ucp3 (ENSLCAG00010023816)	ppme1 (ENSLCAG00010023813)	nectin3b (ENSLCAG00010023807)	rtn2b (ENSLCAG00010023803)	ppm1nb (ENSLCAG00010023793)	ENSLCAG00010023787	ENSLCAG00010023781	ccdc61 (ENSLCAG00010023777)	ENSLCAG00010023769
Pleuronectoidei	ANCESTRAL SPECIES	23	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000169200	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159656.b	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d
Turbot	MODERN SPECIES	16	ENSSMAG00000033214	ENSSMAG00000016283	ENSSMAG00000016336	ENSSMAG00000016383	ENSSMAG00000016459	ENSSMAG00000016574	ENSSMAG00000016615	ENSSMAG00000016789	ENSSMAG00000016799	ENSSMAG00000016808	ENSSMAG00000016958	ENSSMAG00000016988	scn4bb (ENSSMAG00000017096)	ENSSMAG00000034385	ENSSMAG00000017127	pafah1b2 (ENSSMAG00000017153) ##22	ENSSMAG00000031034	ENSSMAG00000017197	ENSSMAG00000000335	dnajb13 (ENSSMAG00000017271)	ENSSMAG00000017308	ucp3 (ENSSMAG00000017321)	PPME1 (ENSSMAG00000017329)	ENSSMAG00000017343	nectin3b (ENSSMAG00000024608)	rtn2b (ENSSMAG00000030216)	ppm1nb (ENSSMAG00000017377)	ENSSMAG00000017399	ENSSMAG00000017414	ENSSMAG00000030770	ENSSMAG00000017452
Anabantaria	ANCESTRAL SPECIES	13	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Zig-zag eel	MODERN SPECIES	5	ENSMAMG00000013562	ENSMAMG00000013540	ENSMAMG00000013516	ENSMAMG00000013494	ENSMAMG00000013472	ENSMAMG00000013435	ENSMAMG00000012993	ENSMAMG00000012891	ENSMAMG00000012849	ENSMAMG00000012844	ENSMAMG00000012812	ENSMAMG00000012779	ENSMAMG00000012713	scn4bb (ENSMAMG00000027857)	ENSMAMG00000012561	pafah1b2 (ENSMAMG00000026236) ##22	ENSMAMG00000025317	ENSMAMG00000012534	ENSMAMG00000028350	dnajb13 (ENSMAMG00000012412)	ENSMAMG00000012462	ucp3 (ENSMAMG00000012405)	PPME1 (ENSMAMG00000012372)	nectin3b (ENSMAMG00000024393)	ppm1nb (ENSMAMG00000012336)	ENSMAMG00000026359	rtn2b (ENSMAMG00000012348)	ENSMAMG00000012300	ENSMAMG00000012287	ENSMAMG00000012238	ENSMAMG00000012149
Anabantoidei	ANCESTRAL SPECIES	12	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Climbing perch	MODERN SPECIES	5	ENSATEG00000013278	ENSATEG00000013250	ENSATEG00000013237	ENSATEG00000013223	ENSATEG00000013204	ENSATEG00000013158	ENSATEG00000013110	ENSATEG00000012967	ENSATEG00000012921	ENSATEG00000012906	ENSATEG00000012783	ENSATEG00000012738	ENSATEG00000012641	scn4bb (ENSATEG00000026474)	ENSATEG00000012553	pafah1b2 (ENSATEG00000012530) ##22	ENSATEG00000012505	ENSATEG00000012491	ENSATEG00000012459	dnajb13 (ENSATEG00000012435)	ENSATEG00000012408	ucp3 (ENSATEG00000012397)	PPME1 (ENSATEG00000012360)	nectin3b (ENSATEG00000012282)	rtn2b (ENSATEG00000012255)	ppm1nb (ENSATEG00000012234)	ENSATEG00000012223	ENSATEG00000012175	ENSATEG00000012119	ENSATEG00000029657	ENSATEG00000012096
Siamese fighting fish	MODERN SPECIES	5	fam76b (ENSBSLG00000004822)	mtmr2 (ENSBSLG00000005158)	cwc15 (ENSBSLG00000006023)	plp1b (ENSBSLG00000006034)	nlgn3b (ENSBSLG00000006040)	ENSBSLG00000006873	thoc2 (ENSBSLG00000007877)	stag2a (ENSBSLG00000008590)	ENSBSLG00000012245	ENSBSLG00000012286	myo1ca (ENSBSLG00000012344)	ENSBSLG00000013084	DSCAML1 (ENSBSLG00000013260)	scn4bb (ENSBSLG00000013748)	mpzl2b (ENSBSLG00000014047)	pafah1b2 (ENSBSLG00000014120) ##22	TAGLN (ENSBSLG00000014143)	gjd1a (ENSBSLG00000014174)	ENSBSLG00000014199	dnajb13 (ENSBSLG00000014411)	ucp3 (ENSBSLG00000014434)	ppme1 (ENSBSLG00000014449)	nectin3b (ENSBSLG00000014643)	rtn2b (ENSBSLG00000014699)	ppm1nb (ENSBSLG00000014891)	ENSBSLG00000015007	ENSBSLG00000015012	ENSBSLG00000015034	ENSBSLG00000015043	pls3 (ENSBSLG00000015077)	CNGA2 (ENSBSLG00000015275)
Eupercaria	ANCESTRAL SPECIES	17	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Tetraodontidae	ANCESTRAL SPECIES	6	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a	ENSGT00940000155374.g.a
Fugu	MODERN SPECIES	6	cwc15 (ENSTRUG00000015508)	ENSTRUG00000025565	plp1b (ENSTRUG00000015475)	nlgn3b (ENSTRUG00000015428)	ENSTRUG00000015419	gria3a (ENSTRUG00000015213)	thoc2 (ENSTRUG00000015122)	stag2a (ENSTRUG00000014972)	epd (ENSTRUG00000014952)	ENSTRUG00000019613	myo1ca (ENSTRUG00000022255)	ENSTRUG00000014756	DSCAML1 (ENSTRUG00000014643)	scn4bb (ENSTRUG00000014639)	mpzl2b (ENSTRUG00000014632)	pafah1b2 (ENSTRUG00000014593) ##22	gjd1a (ENSTRUG00000014581)	rab6a (ENSTRUG00000023252)	dnajb13 (ENSTRUG00000014519)	ucp2 (ENSTRUG00000014496)	ucp3 (ENSTRUG00000014470)	ppme1 (ENSTRUG00000014414)	nectin3b (ENSTRUG00000020511)	rtn8 (ENSTRUG00000014329)	ppm1nb (ENSTRUG00000014288)	ENSTRUG00000014245	ENSTRUG00000014239	ccdc61 (ENSTRUG00000014187)	pls3 (ENSTRUG00000013960)	CNGA2 (ENSTRUG00000013886)	rraga (ENSTRUG00000013796)
Tetraodon	MODERN SPECIES	22	slc6a7 (ENSTNIG00000011787)	taf1 (ENSTNIG00000011788)	fam76b (ENSTNIG00000011789)	mtmr2 (ENSTNIG00000004380)	cwc15 (ENSTNIG00000011790)	plp1b (ENSTNIG00000011791)	nlgn3b (ENSTNIG00000011792)	gria3a (ENSTNIG00000011793)	thoc2 (ENSTNIG00000011794)	stag2a (ENSTNIG00000011795)	epd (ENSTNIG00000011796)	myo1ca (ENSTNIG00000011797)	ARHGAP35 (ENSTNIG00000011798)	DSCAML1 (ENSTNIG00000011799)	mpzl2b (ENSTNIG00000002462)	pafah1b2 (ENSTNIG00000011800) ##22	gjd1a (ENSTNIG00000011801)	dnajb13 (ENSTNIG00000011802)	ucp2 (ENSTNIG00000011803)	ucp3 (ENSTNIG00000011804)	ppme1 (ENSTNIG00000011805)	nectin3b (ENSTNIG00000011806)	rtn2b (ENSTNIG00000011807)	ppm1nb (ENSTNIG00000011808)	ENSTNIG00000001363	ENSTNIG00000011809	ccdc61 (ENSTNIG00000011810)	ENSTNIG00000011811	PLS3 (ENSTNIG00000011812)	CNGA2 (ENSTNIG00000011813)	rraga (ENSTNIG00000011814)
Eupecaria_A	ANCESTRAL SPECIES	17	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000178625	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Ballan wrasse	MODERN SPECIES	30				ENSLBEG00000002822	gria3a (ENSLBEG00000002862)	thoc2 (ENSLBEG00000003049)	stag2a (ENSLBEG00000003183)	ENSLBEG00000003285	ENSLBEG00000003302	ENSLBEG00000003317	myo1ca (ENSLBEG00000003349)	ENSLBEG00000003457	DSCAML1 (ENSLBEG00000003529)	scn4bb (ENSLBEG00000003627)	mpzl2b (ENSLBEG00000003648)	pafah1b2 (ENSLBEG00000003670) ##22	TAGLN (ENSLBEG00000003695)	gjd1a (ENSLBEG00000003717)	rab6a (ENSLBEG00000003748)	dnajb13 (ENSLBEG00000003793)	ucp2 (ENSLBEG00000003824)	ucp3 (ENSLBEG00000003840)	ppme1 (ENSLBEG00000003868)	ENSLBEG00000003914	nectin3b (ENSLBEG00000003938)	rtn2b (ENSLBEG00000003954)	ppm1nb (ENSLBEG00000003976)	ENSLBEG00000004006	ENSLBEG00000004045	ccdc61 (ENSLBEG00000004190)	ENSLBEG00000004332
Eupecaria_B	ANCESTRAL SPECIES	17	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Eupecaria_C	ANCESTRAL SPECIES	15	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Gilthead seabream	MODERN SPECIES	4	cwc15 (ENSSAUG00010010588)	plp1b (ENSSAUG00010010579)	nlgn3b (ENSSAUG00010010575)	ENSSAUG00010010570	gria3a (ENSSAUG00010026393)	thoc2 (ENSSAUG00010026193)	stag2a (ENSSAUG00010023496)	ENSSAUG00010023413	ENSSAUG00010023412	myo1ca (ENSSAUG00010019580)	ENSSAUG00010019505	DSCAML1 (ENSSAUG00010019234)	scn4bb (ENSSAUG00010019205)	mpzl2b (ENSSAUG00010019204)	ENSSAUG00010019203	pafah1b2 (ENSSAUG00010019202) ##22	TAGLN (ENSSAUG00010019193)	gjd1a (ENSSAUG00010019189)	rab6a (ENSSAUG00010019180)	dnajb13 (ENSSAUG00010019179)	ucp2 (ENSSAUG00010019176)	UCP3 (ENSSAUG00010019174)	ppme1 (ENSSAUG00010019170)	ENSSAUG00010019166	nectin3b (ENSSAUG00010019163)	rtn2b (ENSSAUG00010019160)	ppm1nb (ENSSAUG00010019158)	ENSSAUG00010019156	ENSSAUG00010019154	ccdc61 (ENSSAUG00010019150)	ENSSAUG00010019141
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	12	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
European seabass	MODERN SPECIES	4	ENSDLAG00005025668	ENSDLAG00005025629	ENSDLAG00005025610	ENSDLAG00005025602	ENSDLAG00005025595	ENSDLAG00005025589	ENSDLAG00005025583	ENSDLAG00005025464	ENSDLAG00005025415	ENSDLAG00005024890	ENSDLAG00005024823	ENSDLAG00005024762	ENSDLAG00005024749	ENSDLAG00005024466	ENSDLAG00005024434	pafah1b2 (ENSDLAG00005024424) ##22	ENSDLAG00005024430	ENSDLAG00005024429	ENSDLAG00005024421	ENSDLAG00005029843	dnajb13 (ENSDLAG00005024385)	ENSDLAG00005024379	ucp3 (ENSDLAG00005024375)	PPME1 (ENSDLAG00005024361)	ENSDLAG00005028878	nectin3b (ENSDLAG00005024357)	rtn2b (ENSDLAG00005028902)	ppm1nb (ENSDLAG00005024351)	ENSDLAG00005034145	ENSDLAG00005024326	ENSDLAG00005024310
Large yellow croaker	MODERN SPECIES	493	mtmr2 (ENSLCRG00005016698)	cwc15 (ENSLCRG00005016687)	plp1b (ENSLCRG00005016684)	nlgn3b (ENSLCRG00005016683)	ENSLCRG00005016679	gria3a (ENSLCRG00005016213)	thoc2 (ENSLCRG00005015759)	stag2a (ENSLCRG00005010455)	ENSLCRG00005010412	ENSLCRG00005010411	myo1ca (ENSLCRG00005009801)	ENSLCRG00005009788	DSCAML1 (ENSLCRG00005009471)	scn4bb (ENSLCRG00005009465)	mpzl2b (ENSLCRG00005009464)	pafah1b2 (ENSLCRG00005009463) ##22	TAGLN (ENSLCRG00005009462)	gjd1a (ENSLCRG00005009461)	rab6a (ENSLCRG00005009444)	ucp2 (ENSLCRG00005009439)	dnajb13 (ENSLCRG00005009435)	ucp3 (ENSLCRG00005009430)	ppme1 (ENSLCRG00005009360)	nectin3b (ENSLCRG00005009359)	rtn2b (ENSLCRG00005009358)	ppm1nb (ENSLCRG00005009357)	ENSLCRG00005009356	ENSLCRG00005009346	ccdc61 (ENSLCRG00005009345)	ENSLCRG00005009339	pls3 (ENSLCRG00005009304)
Perciformes	ANCESTRAL SPECIES	22	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159656.b	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Cottioidei	ANCESTRAL SPECIES	10	ENSGT00390000012084	ENSGT00940000167849	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d	ENSGT00950000183097.a.a.a.f.a.a
Lumpfish	MODERN SPECIES	5	mtmr2 (ENSCLMG00005001697)	cwc15 (ENSCLMG00005002746)	plp1b (ENSCLMG00005002749)	nlgn3b (ENSCLMG00005002750)	ENSCLMG00005002753	gria3a (ENSCLMG00005002756)	thoc2 (ENSCLMG00005002785)	stag2a (ENSCLMG00005006373)	ENSCLMG00005013014	ENSCLMG00005013015	myo1ca (ENSCLMG00005013054)	ENSCLMG00005019119	DSCAML1 (ENSCLMG00005019154)	scn4bb (ENSCLMG00005019155)	mpzl2b (ENSCLMG00005019158)	pafah1b2 (ENSCLMG00005019164) ##22	TAGLN (ENSCLMG00005019166)	gjd1a (ENSCLMG00005019167)	rab6a (ENSCLMG00005019170)	dnajb13 (ENSCLMG00005019174)	ucp2 (ENSCLMG00005019177)	ucp3 (ENSCLMG00005019178)	ppme1 (ENSCLMG00005019180)	ENSCLMG00005019183	nectin3b (ENSCLMG00005019188)	rtn2b (ENSCLMG00005019197)	ppm1nb (ENSCLMG00005019203)	ENSCLMG00005019207	ccdc61 (ENSCLMG00005019209)	pls3 (ENSCLMG00005019222)	CNGA2 (ENSCLMG00005019252)
Stickleback	MODERN SPECIES	7	cwc15 (ENSGACG00000020374)	ENSGACG00000020373	ENSGACG00000020372	plp1b (ENSGACG00000020371)	nlgn3b (ENSGACG00000020370)	ENSGACG00000020369	gria3a (ENSGACG00000020368)	thoc2 (ENSGACG00000020367)	stag2a (ENSGACG00000020366)	ENSGACG00000020365	myo1ca (ENSGACG00000020364)	ENSGACG00000020363	DSCAML1 (ENSGACG00000020362)	scn4bb (ENSGACG00000020361)	mpzl2b (ENSGACG00000020360)	pafah1b2 (ENSGACG00000020359) ##22	TAGLN (ENSGACG00000020358)	gjd1a (ENSGACG00000020357)	rab6a (ENSGACG00000020356)	dnajb13 (ENSGACG00000020355)	ucp2 (ENSGACG00000020354)	ppme1 (ENSGACG00000020353)	ENSGACG00000020352	nectin3b (ENSGACG00000020351)	rtn2b (ENSGACG00000020350)	ppm1nb (ENSGACG00000020349)	ENSGACG00000020348	ENSGACG00000020347	ccdc61 (ENSGACG00000020346)	ENSGACG00000020345	pls3 (ENSGACG00000020344)
Perciformes_a	ANCESTRAL SPECIES	20	ENSGT00940000153669.a	ENSGT00390000012084	ENSGT00390000006915.c.d.b	ENSGT00940000167278	ENSGT00940000153251.b.a	ENSGT00940000156123.b	ENSGT00710000106792	ENSGT00950000182972.a.a.a.a.a.f	ENSGT00940000168284	ENSGT00940000176842	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000155162.p	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000159656.b	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.a.a	ENSGT00940000156028.t	ENSGT00940000160599	ENSGT00940000164695.b	ENSGT00940000166868.a	ENSGT00940000160033.d	ENSGT00940000154133.B	ENSGT00940000155902.d
Channel bull blenny	MODERN SPECIES	5	fam76b (ENSCGOG00000019653)	mtmr2 (ENSCGOG00000018861)	cwc15 (ENSCGOG00000018835)	plp1b (ENSCGOG00000018833)	nlgn3b (ENSCGOG00000018826)	ENSCGOG00000018823	gria3a (ENSCGOG00000013291)	thoc2 (ENSCGOG00000011769)	stag2a (ENSCGOG00000005012)	ENSCGOG00000004865	myo1ca (ENSCGOG00000004024)	ENSCGOG00000004014	ENSCGOG00000004013	DSCAML1 (ENSCGOG00000003980)	scn4bb (ENSCGOG00000003955)	pafah1b2 (ENSCGOG00000003953) ##22	TAGLN (ENSCGOG00000003952)	gjd1a (ENSCGOG00000003951)	rab6a (ENSCGOG00000003529)	dnajb13 (ENSCGOG00000003404)	ucp2 (ENSCGOG00000003390)	ucp3 (ENSCGOG00000003387)	ppme1 (ENSCGOG00000003288)	ENSCGOG00000003278	nectin3b (ENSCGOG00000003276)	rtn2b (ENSCGOG00000003259)	ppm1nb (ENSCGOG00000003254)	ENSCGOG00000003247	ENSCGOG00000003237	ccdc61 (ENSCGOG00000003222)	ENSCGOG00000003092
Pike perch	MODERN SPECIES	37	cwc15 (ENSSLUG00000025522)	plp1b (ENSSLUG00000025513)	nlgn3b (ENSSLUG00000025499)	ENSSLUG00000025488	ENSSLUG00000025485	gria3a (ENSSLUG00000025468)	thoc2 (ENSSLUG00000025436)	stag2a (ENSSLUG00000025099)	ENSSLUG00000024966	ENSSLUG00000024962	myo1ca (ENSSLUG00000024592)	ENSSLUG00000024449	DSCAML1 (ENSSLUG00000024442)	scn4bb (ENSSLUG00000024437)	mpzl2b (ENSSLUG00000024434)	pafah1b2 (ENSSLUG00000024428) ##22	TAGLN (ENSSLUG00000024426)	gjd1a (ENSSLUG00000024424)	ENSSLUG00000024421	dnajb13 (ENSSLUG00000024419)	ucp2 (ENSSLUG00000024417)	ucp3 (ENSSLUG00000024409)	ppme1 (ENSSLUG00000024399)	nectin3b (ENSSLUG00000024391)	rtn2b (ENSSLUG00000024386)	ppm1nb (ENSSLUG00000024380)	ENSSLUG00000024372	ENSSLUG00000024367	ccdc61 (ENSSLUG00000024355)	ENSSLUG00000024344	pls3 (ENSSLUG00000024284)
Pinecone sodierfish	MODERN SPECIES	5	plp1b (ENSMMDG00005024422)	nlgn3b (ENSMMDG00005024425)	ENSMMDG00005024427	gria3a (ENSMMDG00005024430)	ENSMMDG00005024432	ENSMMDG00005024433	thoc2 (ENSMMDG00005024440)	stag2a (ENSMMDG00005024459)	epd (ENSMMDG00005024460)	ENSMMDG00005024462	myo1ca (ENSMMDG00005024477)	ENSMMDG00005024533	DSCAML1 (ENSMMDG00005024534)	scn4bb (ENSMMDG00005001221)	mpzl2b (ENSMMDG00005001242)	pafah1b2 (ENSMMDG00005001252) ##22	TAGLN (ENSMMDG00005001263)	gjd1a (ENSMMDG00005001272)	rab6a (ENSMMDG00005001298)	dnajb13 (ENSMMDG00005001382)	ucp2 (ENSMMDG00005001391)	ucp3 (ENSMMDG00005001405)	ppme1 (ENSMMDG00005001443)	ENSMMDG00005001796	ENSMMDG00005001800	nectin3b (ENSMMDG00005001804)	rtn2b (ENSMMDG00005001812)	ppm1nb (ENSMMDG00005001820)	ENSMMDG00005001828	ENSMMDG00005001848	ccdc61 (ENSMMDG00005001906)
Cod	MODERN SPECIES	20	ENSGMOG00000016200	ENSGMOG00000016163	cwc15 (ENSGMOG00000016146)	ENSGMOG00000016125	ENSGMOG00000016114	ENSGMOG00000028261	ENSGMOG00000000089	ENSGMOG00000000069	ENSGMOG00000035661	ENSGMOG00000033506	ENSGMOG00000000051	ENSGMOG00000000047	ENSGMOG00000000041	scn4bb (ENSGMOG00000035979)	mpzl2b (ENSGMOG00000027926)	pafah1b2 (ENSGMOG00000018258) ##22	apoa1a (ENSGMOG00000001758)	ENSGMOG00000018251	ENSGMOG00000014288	ENSGMOG00000024864	ENSGMOG00000003451	ENSGMOG00000003200	ENSGMOG00000003420	nectin3b (ENSGMOG00000017549)	rtn2b (ENSGMOG00000017752)	ppm1nb (ENSGMOG00000031036)	ENSGMOG00000007189	ENSGMOG00000035104	ENSGMOG00000005011	ENSGMOG00000004896	ENSGMOG00000004872
Protacanthopterygii	ANCESTRAL SPECIES	11	ENSGT00940000159074.f	ENSGT00950000183168.D	ENSGT00390000012084	ENSGT00940000153972.A.b	ENSGT00940000168284	ENSGT01030000234981	ENSGT00940000166539	ENSGT00940000154553.a.a.d	ENSGT00940000155354.b	ENSGT01000000215748	ENSGT00940000155207.b	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.b.a.a	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a ##22	ENSGT00940000174767	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159965.g.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT00940000154769.pb.b	ENSGT00390000012955	ENSGT00940000158090	ENSGT00940000159524	ENSGT00940000165592.b	ENSGT00390000004396.g	ENSGT00940000163093.b
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	212	ENSGT00950000183168.D.d	ENSGT00390000012084.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b.w.a.b	ENSGT00940000164866.d	ENSGT00940000153972.A.b.i	ENSGT00940000168284.e	ENSGT01030000234981.e	ENSGT00940000166539.b	ENSGT00940000154553.a.a.d.a	ENSGT00940000162008.e.b	ENSGT00940000155354.b.b	ENSGT00940000159197.g.b.b	ENSGT01030000234556.b.b.a.b.b	ENSGT01030000234556.b.a.a.b	ENSGT00950000183199.a.a.u ##22	ENSGT00940000159470.k	ENSGT00940000155162.o.a.b	ENSGT00940000153875.d.a.x	ENSGT01100000263516.a.a.b.h.b	ENSGT00970000198302.A	ENSGT00940000159120.e.d	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000154769.pb.b.b	ENSGT00390000012955.e	ENSGT00940000158090	ENSGT00940000159524.d	ENSGT00390000004396.g.f
Salmoninae_a	ANCESTRAL SPECIES	24	ENSGT00950000183168.D.d	ENSGT00390000012084.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b.w.a.b	ENSGT00940000164866.d	ENSGT00940000153972.A.b.i	ENSGT00940000168284.e	ENSGT01030000234981.e	ENSGT00940000166539.b	ENSGT00940000154553.a.a.d.a	ENSGT00940000162008.e.b	ENSGT00940000155354.b.b	ENSGT00940000159197.g.b.b	ENSGT01030000234556.b.b.a.b.b	ENSGT01030000234556.b.a.a.b	ENSGT00950000183199.a.a.u ##22	ENSGT00940000159470.k	ENSGT00940000155162.o.a.b	ENSGT00940000153875.d.a.x	ENSGT01100000263516.a.a.b.h.b	ENSGT00970000198302.A.a	ENSGT00940000159120.e.d	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000154769.pb.b.b	ENSGT00390000012955.e	ENSGT00940000158090	ENSGT00940000159524.d	ENSGT00390000004396.g.f	ENSGT00940000163093.a.a	ENSGT00940000156028.t.e	ENSGT00940000159399.c.a.b
Salmo	ANCESTRAL SPECIES	13	ENSGT00950000183168.D.d	ENSGT00390000012084.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b.w.a.b	ENSGT00940000164866.d	ENSGT00940000153972.A.b.i	ENSGT00940000168284.e	ENSGT01030000234981.e	ENSGT00940000166539.b	ENSGT00940000154553.a.a.d.a	ENSGT00940000162008.e.b	ENSGT00940000155354.b.b	ENSGT00940000159197.g.b.b	ENSGT01030000234556.b.b.a.b.b	ENSGT01030000234556.b.a.a.b	ENSGT00950000183199.a.a.u ##22	ENSGT00940000159470.k	ENSGT00940000155162.o.a.b	ENSGT00940000153875.d.a.x	ENSGT01100000263516.a.a.b.h.b	ENSGT00970000198302.A.b	ENSGT00940000159120.e.d	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000154769.pb.b.b	ENSGT00390000012955.e	ENSGT00940000158090	ENSGT00940000159524.d	ENSGT00390000004396.g.f	ENSGT00940000163093.a.a	ENSGT00940000156028.t.e	ENSGT00940000159399.c.a.b
River trout	MODERN SPECIES	6	sesn3 (ENSSTUG00000015472)	cwc15 (ENSSTUG00000015682)	ENSSTUG00000015733	ENSSTUG00000015836	ENSSTUG00000015858	panx1b (ENSSTUG00000015860)	epd (ENSSTUG00000015873)	ENSSTUG00000015899	myo1ca (ENSSTUG00000015980)	ENSSTUG00000017173	PRLHR (ENSSTUG00000017183)	DSCAML1 (ENSSTUG00000017253)	tmprss13b (ENSSTUG00000018114)	scn4bb (ENSSTUG00000018132)	ENSSTUG00000018141	pafah1b2 (ENSSTUG00000018153) ##22	ENSSTUG00000018161	tagln2 (ENSSTUG00000018178)	tppp2 (ENSSTUG00000018191)	ENSSTUG00000018202	ENSSTUG00000018207	ENSSTUG00000018214	nfkbib (ENSSTUG00000018239)	gjd1a (ENSSTUG00000018252)	rab6a (ENSSTUG00000018273)	mrpl48 (ENSSTUG00000018371)	dnajb13 (ENSSTUG00000018399)	ucp2 (ENSSTUG00000019131)	ENSSTUG00000019167	nectin3b (ENSSTUG00000019176)	RAB4B (ENSSTUG00000019190)
Atlantic salmon	MODERN SPECIES	4	ENSSSAG00000118091	ENSSSAG00000073456	ENSSSAG00000052702	ENSSSAG00000073512	ENSSSAG00000073546	ENSSSAG00000073984	ENSSSAG00000073987	epd (ENSSSAG00000073991)	ENSSSAG00000073994	myo1ca (ENSSSAG00000074022)	ENSSSAG00000074243	ENSSSAG00000074248	ENSSSAG00000074284	ENSSSAG00000074848	mpzl2 (ENSSSAG00000074851)	ENSSSAG00000074852 ##22	ENSSSAG00000099039	ENSSSAG00000090262	ENSSSAG00000074854	ENSSSAG00000106124	TAGL (ENSSSAG00000074856)	ENSSSAG00000074862	ENSSSAG00000074865	ENSSSAG00000004311	ENSSSAG00000088660	ENSSSAG00000004321	rab6a (ENSSSAG00000004359)	mrpl48 (ENSSSAG00000004508)	dnajb13 (ENSSSAG00000004541)	UCP2 (ENSSSAG00000004557)	PPME1 (ENSSSAG00000004579)
Oncorhynchus	ANCESTRAL SPECIES	21	ENSGT00940000159074.f.a	ENSGT00950000183168.D.d	ENSGT00390000012084.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b.w.a.b	ENSGT00940000164866.d	ENSGT00940000168284.e	ENSGT01030000234981.e	ENSGT00940000166539.b	ENSGT00940000154553.a.a.d.a	ENSGT00940000162008.e.b	ENSGT00940000155354.b.b	ENSGT00940000159197.g.b.b	ENSGT01030000234556.b.b.a.b.b	ENSGT01030000234556.b.a.a.b	ENSGT00950000183199.a.a.u ##22	ENSGT00940000159470.k	ENSGT00940000155162.o.a.b	ENSGT00940000153875.d.a.x	ENSGT01100000263516.a.a.b.h.b	ENSGT00970000198302.A.a	ENSGT01100000263505.b.b.b.a.b.d	ENSGT00940000159120.e.d	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000154769.pb.b.a.a	ENSGT00390000012955.e	ENSGT00940000158090	ENSGT00940000159524.d	ENSGT00390000004396.g.f	ENSGT00940000163093.a.a	ENSGT00940000156028.t.e
Oncorhynchus_a	ANCESTRAL SPECIES	19	ENSGT00940000153669.a.r	ENSGT00940000159074.f.a	ENSGT00950000183168.D.d	ENSGT00390000012084.a	ENSGT00940000159677.a.a	ENSGT00940000159677.a.b.w.a.b	ENSGT00940000164866.d	ENSGT00940000168284.e	ENSGT01030000234981.e	ENSGT00940000166539.b	ENSGT00940000154553.a.a.d.a	ENSGT00940000155354.b.b	ENSGT00940000159197.g.b.b	ENSGT01030000234556.b.b.a.b.b	ENSGT01030000234556.b.a.a.b	ENSGT00950000183199.a.a.u ##22	ENSGT00940000174767	ENSGT00940000159470.k	ENSGT00940000155162.o.a.b	ENSGT00940000153875.d.a.x	ENSGT01100000263516.a.a.b.h.b	ENSGT00970000198302.A.a	ENSGT01100000263505.b.b.b.a.b.d	ENSGT00940000159120.e.d	ENSGT01090000260005.a.b.a.b.b.j.b	ENSGT00940000154769.pb.b.a.a	ENSGT00390000012955.e	ENSGT00940000158090	ENSGT00940000159524.d	ENSGT00390000004396.g.f	ENSGT00940000163093.a.a
Chinook salmon	MODERN SPECIES	33	fam76b (ENSOTSG00005023981)	sesn3 (ENSOTSG00005023973)	cwc15 (ENSOTSG00005023972)	ENSOTSG00005023970	ENSOTSG00005023895	ENSOTSG00005023890	epd (ENSOTSG00005023888)	ENSOTSG00005023886	myo1ca (ENSOTSG00005012801)	ENSOTSG00005012764	ENSOTSG00005012763	DSCAML1 (ENSOTSG00005012488)	tmprss13b (ENSOTSG00005012471)	scn4bb (ENSOTSG00005012470)	ENSOTSG00005012469	pafah1b2 (ENSOTSG00005012468) ##22	ENSOTSG00005012452	ENSOTSG00005012451	tagln2 (ENSOTSG00005012450)	tppp2 (ENSOTSG00005012447)	ENSOTSG00005012445	ENSOTSG00005012441	ENSOTSG00005012432	nfkbib (ENSOTSG00005012430)	gjd1a (ENSOTSG00005012429)	rab6a (ENSOTSG00005012310)	ENSOTSG00005012308	dnajb13 (ENSOTSG00005012307)	ucp2 (ENSOTSG00005012305)	ppme1 (ENSOTSG00005012301)	ENSOTSG00005012299
Coho salmon	MODERN SPECIES	26	MTMR2 (ENSOKIG00005019116)	fam76b (ENSOKIG00005018705)	ENSOKIG00005018643	cwc15 (ENSOKIG00005018621)	UGT1A1 (ENSOKIG00005018604)	ENSOKIG00005018594	epd (ENSOKIG00005018590)	ENSOKIG00005018573	myo1ca (ENSOKIG00005014108)	ENSOKIG00005013793	ENSOKIG00005013780	DSCAML1 (ENSOKIG00005012215)	tmprss13b (ENSOKIG00005012078)	scn4bb (ENSOKIG00005012046)	ENSOKIG00005012038	PAFAH1B2 (ENSOKIG00005012031) ##22	ENSOKIG00005011949	tagln2 (ENSOKIG00005011911)	ENSOKIG00005011886	tppp2 (ENSOKIG00005011870)	ENSOKIG00005011863	ENSOKIG00005011857	ENSOKIG00005011842	ENSOKIG00005011826	nfkbib (ENSOKIG00005011818)	gjd1a (ENSOKIG00005011802)	RAB6A (ENSOKIG00005011698)	mrpl48 (ENSOKIG00005011662)	dnajb13 (ENSOKIG00005011642)	ucp2 (ENSOKIG00005050659)	ppme1 (ENSOKIG00005050644)
Rainbow trout	MODERN SPECIES	3	ENSOMYG00000071569	ENSOMYG00000010341	ENSOMYG00000069360	ENSOMYG00000010325	ENSOMYG00000010293	epd (ENSOMYG00000010264)	il27a2 (ENSOMYG00000010247)	myo1ca (ENSOMYG00000009011)	ENSOMYG00000008185	ENSOMYG00000008089	ENSOMYG00000006990	ENSOMYG00000005725	scn4bb (ENSOMYG00000005665)	ENSOMYG00000051872	ENSOMYG00000005643	ENSOMYG00000005574 ##22	ENSOMYG00000005260	tagln2 (ENSOMYG00000067464)	tppp2 (ENSOMYG00000005117)	ENSOMYG00000005073	ENSOMYG00000004966	ENSOMYG00000004901	nfkbib (ENSOMYG00000004854)	gjd1a (ENSOMYG00000048609)	rab6a (ENSOMYG00000004683)	mrpl48 (ENSOMYG00000004555)	dnajb13 (ENSOMYG00000004506)	ucp2b (ENSOMYG00000004487)	PPME1 (ENSOMYG00000004387)	ENSOMYG00000004260	nectin3b (ENSOMYG00000004233)
Huchen	MODERN SPECIES	898												ENSHHUG00000008312	tmprss13b (ENSHHUG00000008308)	scn4bb (ENSHHUG00000008302)	ENSHHUG00000008292	pafah1b2 (ENSHHUG00000008279) ##22	ENSHHUG00000008268	tagln2 (ENSHHUG00000008178)	ENSHHUG00000008162	ENSHHUG00000008138	ENSHHUG00000008128	nfkbib (ENSHHUG00000008108)	gjd1a (ENSHHUG00000008103)	rab6a (ENSHHUG00000008004)	mrpl48 (ENSHHUG00000007988)	dnajb13 (ENSHHUG00000007971)	ucp2 (ENSHHUG00000007929)	ppme1 (ENSHHUG00000007880)
Salmoninae	ANCESTRAL SPECIES	38	ENSGT00940000153669.a.q	ENSGT00940000159074.f.b	ENSGT00950000183168.D.c	ENSGT00390000012084.b	ENSGT00940000153972.A.b.j	ENSGT00940000168284.f	ENSGT01030000234981.f	ENSGT00940000166539.a	ENSGT00940000154553.a.a.d.b	ENSGT00940000155354.b.a	ENSGT01000000215748	ENSGT00940000159197.g.b.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.a.a.a	ENSGT01030000234556.b.a.a.a	ENSGT00950000183199.a.a.v ##22	ENSGT00940000174767	ENSGT00940000159470.l	ENSGT00940000155162.o.a.a	ENSGT00940000153875.d.a.w.b.a	ENSGT01100000263516.a.a.b.h.a	ENSGT00940000159965.g.b	ENSGT00940000159120.e.c	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000154769.pb.a	ENSGT00390000012955.f	ENSGT00940000159524.c	ENSGT00940000165592.b	ENSGT00390000004396.g.e	ENSGT00940000163093.b	ENSGT00390000007237.s
Salmoninae_a	ANCESTRAL SPECIES	4	ENSGT00940000153669.a.q	ENSGT00940000159074.f.b	ENSGT00950000183168.D.c	ENSGT00390000012084.b	ENSGT00940000153972.A.b.j	ENSGT00940000168284.f	ENSGT01030000234981.f	ENSGT00940000166539.a	ENSGT00940000154553.a.a.d.b	ENSGT00940000155354.b.a	ENSGT01000000215748	ENSGT00940000159197.g.b.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.a.a.a	ENSGT01030000234556.b.a.a.a	ENSGT00950000183199.a.a.v ##22	ENSGT00940000174767	ENSGT00940000159470.l	ENSGT00940000155162.o.a.a	ENSGT00940000153875.d.a.w.b.a	ENSGT01100000263516.a.a.b.h.a	ENSGT00940000159965.g.b	ENSGT00940000159120.e.c	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000154769.pb.a	ENSGT00390000012955.f	ENSGT00940000159524.c	ENSGT00940000165592.b	ENSGT00390000004396.g.e	ENSGT00940000163093.b	ENSGT00390000007237.s
Oncorhynchus	ANCESTRAL SPECIES	4	ENSGT00940000153669.a.q	ENSGT00940000159074.f.b	ENSGT00950000183168.D.c	ENSGT00390000012084.b	ENSGT00940000153972.A.b.j	ENSGT00940000168284.f	ENSGT01030000234981.f	ENSGT00940000166539.a	ENSGT00940000154553.a.a.d.b	ENSGT00940000155354.b.a	ENSGT01000000215748	ENSGT00940000159197.g.b.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.a.a.a	ENSGT01030000234556.b.a.a.a	ENSGT00950000183199.a.a.v ##22	ENSGT00940000174767	ENSGT00940000159470.l	ENSGT00940000155162.o.a.a	ENSGT00940000153875.d.a.w.b.a	ENSGT01100000263516.a.a.b.h.a	ENSGT00940000159965.g.b	ENSGT00940000159120.e.c	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000154769.pb.b.b	ENSGT00390000012955.f.b	ENSGT00940000159524.c	ENSGT00940000165592.b	ENSGT00390000004396.g.e	ENSGT00940000163093.b	ENSGT00390000007237.s
Oncorhynchus_a	ANCESTRAL SPECIES	2	ENSGT00940000159817.kb.b	ENSGT00940000153669.a.q	ENSGT00940000159074.f.b	ENSGT00950000183168.D.c	ENSGT00390000012084.b	ENSGT00940000153972.A.b.j	ENSGT01030000234981.f	ENSGT00940000166539.a	ENSGT00940000154553.a.a.d.b	ENSGT00940000155354.b.a	ENSGT01000000215748	ENSGT00940000159197.g.b.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.a.a.a	ENSGT01030000234556.b.a.a.a	ENSGT00950000183199.a.a.v ##22	ENSGT00940000159470.l	ENSGT00940000155162.o.a.a	ENSGT00940000153875.d.a.w.b.a	ENSGT01100000263516.a.a.b.h.a	ENSGT00970000198302.B	ENSGT00940000159120.e.c	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000154769.pb.b.b	ENSGT00390000012955.f.b	ENSGT00940000159524.c	ENSGT00940000165592.b	ENSGT00390000004396.g.e	ENSGT00940000163093.b	ENSGT00390000007237.s	ENSGT00940000156028.t.f
Coho salmon	MODERN SPECIES	20	PDE2A (ENSOKIG00005034457)	mtmr2 (ENSOKIG00005032868)	fam76b (ENSOKIG00005032457)	sesn3 (ENSOKIG00005032413)	CWC15 (ENSOKIG00005032369)	panx1b (ENSOKIG00005032303)	ENSOKIG00005032273	myo1ca (ENSOKIG00005031543)	ENSOKIG00005031451	DSCAML1 (ENSOKIG00005031416)	fxyd2 (ENSOKIG00005031382)	tmprss13b (ENSOKIG00005031364)	tmprss4b (ENSOKIG00005031346)	scn4bb (ENSOKIG00005031324)	ENSOKIG00005031311	pafah1b2 (ENSOKIG00005031289) ##22	ENSOKIG00005031257	tagln2 (ENSOKIG00005031214)	tppp2 (ENSOKIG00005031195)	ENSOKIG00005031173	ENSOKIG00005031155	nfkbib (ENSOKIG00005031144)	gjd1a (ENSOKIG00005031123)	rab6a (ENSOKIG00005031044)	mrpl48 (ENSOKIG00005030984)	ucp2 (ENSOKIG00005030961)	ucp3 (ENSOKIG00005030937)	PPME1 (ENSOKIG00005030854)	ENSOKIG00005030800	diablob (ENSOKIG00005030764)	nectin3b (ENSOKIG00005030748)
Chinook salmon	MODERN SPECIES	273											ENSOTSG00005014516	tmprss4b (ENSOTSG00005014514)	ENSOTSG00005014513	tmprss13b (ENSOTSG00005014508)	ENSOTSG00005014504	pafah1b2 (ENSOTSG00005014501) ##22	ENSOTSG00005014496	TAGLN (ENSOTSG00005014472)	ENSOTSG00005014469
Rainbow trout	MODERN SPECIES	1	ENSOMYG00000044585	ENSOMYG00000044807	ENSOMYG00000066401	ENSOMYG00000044817	panx1b (ENSOMYG00000044837)	epd (ENSOMYG00000044824)	ENSOMYG00000044845	myo1ca (ENSOMYG00000044928)	ENSOMYG00000045314	ENSOMYG00000074077	ENSOMYG00000045317	ENSOMYG00000045321	tmprss4b (ENSOMYG00000045326)	scn4bb (ENSOMYG00000045330)	ENSOMYG00000045339	pafah1b2 (ENSOMYG00000055181) ##22	ENSOMYG00000045346	ENSOMYG00000045350	tagln2 (ENSOMYG00000045333)	tppp2 (ENSOMYG00000045353)	ENSOMYG00000045355	ENSOMYG00000045356	nfkbib (ENSOMYG00000045358)	ENSOMYG00000060242	gjd1a (ENSOMYG00000045360)	ENSOMYG00000045369	mrpl48 (ENSOMYG00000045394)	ucp2a (ENSOMYG00000045400)	ucp3 (ENSOMYG00000045407)	ENSOMYG00000045418	ENSOMYG00000045425
Salmo	ANCESTRAL SPECIES	17	ENSGT00940000153669.a.q	ENSGT00940000159074.f.b	ENSGT00950000183168.D.c	ENSGT00390000012084.b	ENSGT00940000153972.A.b.j	ENSGT01030000234981.f	ENSGT00940000168284.f	ENSGT00940000166539.a	ENSGT00940000154553.a.a.d.b	ENSGT00940000155354.b.a	ENSGT01000000215748	ENSGT00940000159197.g.b.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.a.b	ENSGT01030000234556.b.a.a.a	ENSGT00950000183199.a.a.v ##22	ENSGT00940000159470.l	ENSGT00940000155162.o.a.a	ENSGT00940000153875.d.a.w.a	ENSGT01100000263516.a.a.b.h.a	ENSGT00940000159965.g.b	ENSGT00940000159120.e.c	ENSGT01090000260005.a.b.a.b.b.j.a	ENSGT00940000154769.pb.a	ENSGT00390000012955.f	ENSGT00940000159524.c	ENSGT00940000165592.b	ENSGT00390000004396.g.e	ENSGT00940000163093.b	ENSGT00390000007237.s	ENSGT00940000156028.t.f
Atlantic salmon	MODERN SPECIES	23	ENSSSAG00000052780	fam76b (ENSSSAG00000099815)	ENSSSAG00000073466	ENSSSAG00000052670	ENSSSAG00000052656	ENSSSAG00000052622	epd (ENSSSAG00000052638)	ENSSSAG00000045995	ENSSSAG00000045798	ENSSSAG00000045430	ENSSSAG00000110163	TMPRSS13 (ENSSSAG00000045356)	tmprss4b (ENSSSAG00000045344)	ENSSSAG00000045215	ENSSSAG00000081970	pafah1b2 (ENSSSAG00000045192) ##22	ENSSSAG00000045154	ENSSSAG00000120166	tagln2 (ENSSSAG00000045101)	tppp2 (ENSSSAG00000045084)	ENSSSAG00000045077	ENSSSAG00000045059	nfkbib (ENSSSAG00000114029)	gjd1a (ENSSSAG00000097893)	ENSSSAG00000111731	mrpl48 (ENSSSAG00000044753)	UCP2 (ENSSSAG00000044701)	ucp3 (ENSSSAG00000044557)	ENSSSAG00000044487	ENSSSAG00000044470	ENSSSAG00000044461
River trout	MODERN SPECIES	10	ENSSTUG00000015846	PDE2A (ENSSTUG00000015863)	mtmr2 (ENSSTUG00000016646)	fam76b (ENSSTUG00000016956)	sesn3 (ENSSTUG00000017125)	cwc15 (ENSSTUG00000017273)	panx1b (ENSSTUG00000017311)	ENSSTUG00000017347	myo1ca (ENSSTUG00000017481)	ENSSTUG00000023079	fxyd2 (ENSSTUG00000023094)	tmprss13b (ENSSTUG00000023103)	tmprss4b (ENSSTUG00000023119)	scn4bb (ENSSTUG00000023162)	ENSSTUG00000023188	pafah1b2 (ENSSTUG00000023193) ##22	ENSSTUG00000023210	tagln2 (ENSSTUG00000023235)	tppp2 (ENSSTUG00000023267)	ENSSTUG00000023278	ENSSTUG00000023315	nfkbib (ENSSTUG00000023334)	gjd1a (ENSSTUG00000023344)	RAB6A (ENSSTUG00000023351)	mrpl48 (ENSSTUG00000023393)	ucp2 (ENSSTUG00000023441)	ucp3 (ENSSTUG00000023453)	ppme1 (ENSSTUG00000023495)	or92a1 (ENSSTUG00000023565)	diablob (ENSSTUG00000023574)	nectin3b (ENSSTUG00000023587)
Huchen	MODERN SPECIES	548	PDE2A (ENSHHUG00000003522)	mtmr2 (ENSHHUG00000002767)	sesn3 (ENSHHUG00000002582)	cwc15 (ENSHHUG00000002567)	panx1b (ENSHHUG00000002566)	epd (ENSHHUG00000002430)	ENSHHUG00000002410	myo1ca (ENSHHUG00000002331)	ENSHHUG00000002313	DSCAML1 (ENSHHUG00000002204)	fxyd2 (ENSHHUG00000002196)	tmprss13b (ENSHHUG00000002176)	tmprss4b (ENSHHUG00000002166)	scn4bb (ENSHHUG00000002158)	ENSHHUG00000002150	pafah1b2 (ENSHHUG00000002117) ##22
Northern pike	MODERN SPECIES	6	cwc15 (ENSELUG00000008086)	panx1b (ENSELUG00000000298)	epd (ENSELUG00000008157)	ENSELUG00000008169	myo1ca (ENSELUG00000008302)	ENSELUG00000001334	ENSELUG00000026412	PRLHR (ENSELUG00000031083)	DSCAML1 (ENSELUG00000008480)	ENSELUG00000026686	ENSELUG00000025238	ENSELUG00000008540	tmprss4b (ENSELUG00000008566)	scn4bb (ENSELUG00000008602)	mpzl2b (ENSELUG00000000326)	pafah1b2 (ENSELUG00000008656) ##22	apoa1a (ENSELUG00000030322)	ENSELUG00000028639	tagln2 (ENSELUG00000001168)	tppp2 (ENSELUG00000008741)	ENSELUG00000008768	ENSELUG00000008778	nfkbib (ENSELUG00000008800)	gjd1a (ENSELUG00000033449)	rab6a (ENSELUG00000008876)	mrpl48 (ENSELUG00000008942)	dnajb13 (ENSELUG00000008963)	ucp2 (ENSELUG00000008990)	ucp3 (ENSELUG00000009017)	ppme1 (ENSELUG00000009072)	or92a1 (ENSELUG00000009106)
Otomorpha	DUPLICATION
Otomorpha	ANCESTRAL SPECIES	65	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d	ENSGT00960000187503	ENSGT01030000234872	ENSGT00940000159197	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000155162.o.b	ENSGT00940000163520.B	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b
Clupeiformes	ANCESTRAL SPECIES	310	ENSGT00940000158847.d	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000159470
Denticle herring	MODERN SPECIES	16	ENSDCDG00000033452	myo1ca (ENSDCDG00000033496)	ENSDCDG00000033963	epd (ENSDCDG00000033965)	panx1b (ENSDCDG00000033966)	GPR83 (ENSDCDG00000033968)	ins (ENSDCDG00000033972)	ENSDCDG00000033975	ENSDCDG00000033976	gdf9 (ENSDCDG00000033987)	ENSDCDG00000034005	tmprss4b (ENSDCDG00000034010)	scn4bb (ENSDCDG00000034015)	mpzl2b (ENSDCDG00000034018)	mpzl2b (ENSDCDG00000034021)	pafah1b2 (ENSDCDG00000034022) ##22	apoa1a (ENSDCDG00000034023)	ENSDCDG00000034024	tagln2 (ENSDCDG00000034025)	tppp2 (ENSDCDG00000034026)	ENSDCDG00000034028	ENSDCDG00000034030	APPBP2 (ENSDCDG00000034035)	ENSDCDG00000034051	ENSDCDG00000034114	APBB1 (ENSDCDG00000034120)	ROBO1 (ENSDCDG00000034295)	ROBO2 (ENSDCDG00000034933)	ENSDCDG00000035257	ENSDCDG00000035258	GIMAP5 (ENSDCDG00000035259)
Atlantic herring	MODERN SPECIES	24	rxfp2a (ENSCHAG00000013957)	FRY (ENSCHAG00000014269)	ENSCHAG00000024892	myo1ca (ENSCHAG00000024980)	ENSCHAG00000025902	epd (ENSCHAG00000025908)	epd (ENSCHAG00000025914)	panx1b (ENSCHAG00000025918)	ENSCHAG00000025921	ins (ENSCHAG00000025924)	ENSCHAG00000025928	tmprss13b (ENSCHAG00000025930)	ENSCHAG00000025934	scn4bb (ENSCHAG00000025940)	mpzl2b (ENSCHAG00000025941)	pafah1b2 (ENSCHAG00000025945) ##22	apoa1a (ENSCHAG00000025950)	tppp2 (ENSCHAG00000025954)	ENSCHAG00000025960	tagln2 (ENSCHAG00000025963)	ENSCHAG00000025968	ENSCHAG00000025973	ENSCHAG00000026044	ENSCHAG00000026525	APBB1 (ENSCHAG00000026542)	ENSCHAG00000026550	ROBO1 (ENSCHAG00000026564)	ENSCHAG00000026595	ENSCHAG00000026639	ENSCHAG00000026640	ENSCHAG00000026641
Otophysi	ANCESTRAL SPECIES	93	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d	ENSGT01000000215748	ENSGT01030000234872	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000163374	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313
Characiphysae	ANCESTRAL SPECIES	87	ENSGT00940000158847.d	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000154553.a.a.d	ENSGT01000000215748	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000159555.v.b
Channel catfish	MODERN SPECIES	20	ENSIPUG00000019798	klhl13 (ENSIPUG00000019746)	wdr44 (ENSIPUG00000019708)	zgc:163098 (ENSIPUG00000019652)	armh3 (ENSIPUG00000019645)	ENSIPUG00000019632	PLD2 (ENSIPUG00000019596)	si:dkey-111e8.4 (ENSIPUG00000019584)	ENSIPUG00000019579	ENSIPUG00000019577	ENSIPUG00000019567	TMPRSS13 (ENSIPUG00000019527)	tmprss4b (ENSIPUG00000019512)	Scn4b (ENSIPUG00000019498)	mpzl2b (ENSIPUG00000019481)	Pafah1b2 (ENSIPUG00000019468) ##22	apoa1a (ENSIPUG00000019447)	rnf214 (ENSIPUG00000019426)	tagln2 (ENSIPUG00000019407)	TPPP3 (ENSIPUG00000019389)	ENSIPUG00000019350	Nfkbib (ENSIPUG00000019330)	gjd1a (ENSIPUG00000019327)	H33 (ENSIPUG00000019301)	crx (ENSIPUG00000019241)	kptn (ENSIPUG00000019192)	hnrnpl (ENSIPUG00000019108)	srsf7a (ENSIPUG00000019088)	slc8a2a (ENSIPUG00000019066)	nccrp1 (ENSIPUG00000018986)	ENSIPUG00000018969
Characiphysae_b	ANCESTRAL SPECIES	101	ENSGT00940000160285	ENSGT00940000158847.d	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000154553.a.a.d	ENSGT01000000215748	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313	ENSGT00940000159555.v.b
Characoidei	ANCESTRAL SPECIES	92	ENSGT00940000160285	ENSGT00940000158847.d	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000154553.a.a.d	ENSGT01000000215748	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000159470	ENSGT00940000155162.o.a	ENSGT00940000153875.d.a	ENSGT01100000263516.a.a.b	ENSGT00940000159120.e	ENSGT01090000260005.a.b.a.b.b.j	ENSGT01100000263504.a.b.b.a.b	ENSGT01100000263504.a.a	ENSGT00940000164977.a	ENSGT00390000002548	ENSGT01030000234642.a.b.b.d.b.c.b	ENSGT00910000144115.b.bc.b	ENSGT00940000158344.a.b	ENSGT00940000161313
Red-bellied piranha	MODERN SPECIES	223								ENSPNAG00000012923	ENSPNAG00000012905	ENSPNAG00000002444	fxyd2 (ENSPNAG00000002432)	tmprss13b (ENSPNAG00000012864)	ENSPNAG00000012774	scn4bb (ENSPNAG00000012762)	mpzl2b (ENSPNAG00000012750)	pafah1b2 (ENSPNAG00000012710) ##22	ENSPNAG00000006899	apoa1a (ENSPNAG00000012671)	ENSPNAG00000002351	ENSPNAG00000012565	ENSPNAG00000012556	tagln2 (ENSPNAG00000012517)	tppp2 (ENSPNAG00000012498)	ENSPNAG00000012461	ENSPNAG00000002256	ENSPNAG00000002249	nfkbib (ENSPNAG00000002246)	gjd1a (ENSPNAG00000002242)	ENSPNAG00000012398	crx (ENSPNAG00000012385)	kptn (ENSPNAG00000012376)
Mexicana tetra	MODERN SPECIES	18	dpf2 (ENSAMXG00000001974)	ENSAMXG00000026077	myo1ca (ENSAMXG00000001938)	ENSAMXG00000030473	epd (ENSAMXG00000030171)	panx1b (ENSAMXG00000001897)	ENSAMXG00000043570	ENSAMXG00000040082	ENSAMXG00000002249	ENSAMXG00000001865	fxyd2 (ENSAMXG00000034606)	tmprss13b (ENSAMXG00000043292)	ENSAMXG00000001840	scn4bb (ENSAMXG00000001828)	mpzl2b (ENSAMXG00000040971)	pafah1b2 (ENSAMXG00000030539) ##22	apoa1a (ENSAMXG00000001789)	ENSAMXG00000001769	TAGLN (ENSAMXG00000030135)	tppp2 (ENSAMXG00000033198)	ENSAMXG00000029859	ENSAMXG00000001701	ENSAMXG00000001671	nfkbib (ENSAMXG00000001646)	gjd1a (ENSAMXG00000037293)	ENSAMXG00000038983	crx (ENSAMXG00000001577)	ENSAMXG00000044060	ENSAMXG00000001557	kptn (ENSAMXG00000001548)	hnrnpl (ENSAMXG00000001542)
Electric eel	MODERN SPECIES	702											ENSEEEG00000017772	tmprss13b (ENSEEEG00000017771)	tmprss4b (ENSEEEG00000017767)	scn4bb (ENSEEEG00000017759)	mpzl2b (ENSEEEG00000017753)	pafah1b2 (ENSEEEG00000017752) ##22	ENSEEEG00000017751	ENSEEEG00000017749	tagln2 (ENSEEEG00000017748)	tppp2 (ENSEEEG00000017746)	ENSEEEG00000017745	nfkbib (ENSEEEG00000017744)	gjd1a (ENSEEEG00000017743)	ENSEEEG00000017736
Cyprinoidei	ANCESTRAL SPECIES	19	ENSGT00940000161776	ENSGT00940000155070.a.b.b	ENSGT00940000158450.c	ENSGT00940000166539	ENSGT01030000234981	ENSGT00940000168284	ENSGT00940000153972.A.b	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d	ENSGT01000000215748	ENSGT01030000234872	ENSGT00940000159197	ENSGT00940000158589.a	ENSGT01030000234556.b.b.a.b	ENSGT01030000234556.a.a.a.b	ENSGT00950000183199.a.a.w ##22	ENSGT00950000182929.A	ENSGT00940000163374	ENSGT00940000159470	ENSGT00940000177976	ENSGT00940000164220.a.a	ENSGT00940000166953	ENSGT00940000164853.a.a	ENSGT00990000204023.c	ENSGT00990000204023.d	ENSGT00940000163913	ENSGT00940000159400	ENSGT01100000263556.a.a.q.d	ENSGT01000000214413.b.b	ENSGT00950000183196.A	ENSGT00940000160229
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	635							ENSGT00940000166539.f	ENSGT01030000234981.a	ENSGT00940000168284.i	ENSGT00940000153972.A.b.d	ENSGT00940000154553.a.a.d.d	ENSGT00940000159197.j.b.b	ENSGT00940000158589.a.a	ENSGT01030000234556.b.b.a.b.d	ENSGT01030000234556.a.a.a.b.b	ENSGT00950000183199.a.a.w.a ##22	ENSGT00950000182929.A.db.b	ENSGT00940000159470.e.b	ENSGT00940000177976.c	ENSGT00940000166953.a	ENSGT01100000263491.a.b.b.c.a.b.b.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	23	ENSCARG00000053661	arrdc3a (ENSCARG00000053583)	ENSCARG00000053395	tmem175 (ENSCARG00000053372)	myo1ca (ENSCARG00000052680)	ENSCARG00000052620	epd (ENSCARG00000052605)	panx1b (ENSCARG00000052597)	ins (ENSCARG00000052558)	ENSCARG00000052537	tmprss13b (ENSCARG00000052504)	ENSCARG00000052494	scn4bb (ENSCARG00000052379)	mpzl2b (ENSCARG00000052364)	ENSCARG00000052354	pafah1b2 (ENSCARG00000052325) ##22	apoa1a (ENSCARG00000052309)	ENSCARG00000052283	si:dkey-111e8.4 (ENSCARG00000052266)	ENSCARG00000032046	si:ch211-284e13.5 (ENSCARG00000032039)	cox7c (ENSCARG00000032025)	RASA1 (ENSCARG00000030140)	ccnh (ENSCARG00000030015)	tmem161b (ENSCARG00000029726)	mef2cb (ENSCARG00000029454)	zgc:110329 (ENSCARG00000029405)	TACR1 (ENSCARG00000029379)	ncaph (ENSCARG00000029242)	vamp8 (ENSCARG00000029200)	vamp5 (ENSCARG00000029186)
Goldfish	MODERN SPECIES	755											ENSCARG00000033785	tmprss13b (ENSCARG00000033755)	ENSCARG00000033735	scn4bb (ENSCARG00000033700)	mpzl2b (ENSCARG00000033688)	pafah1b2 (ENSCARG00000033677) ##22
Cyprininae_a	ANCESTRAL SPECIES	233											ENSGT01030000234635.a.b.a.b.b.a.b.f	ENSGT00940000159197.j.b.b	ENSGT00940000155418.a.a.b	ENSGT01030000234556.b.b.a.b.d	ENSGT01030000234556.a.a.a.b.b	ENSGT00950000183199.a.a.w.a ##22	ENSGT00950000182929.A.db.b	ENSGT00940000159470.e.b	ENSGT00940000177976.c	ENSGT00940000166953.a	ENSGT01100000263491.a.b.b.c.a.b.b.a	ENSGT00940000164853.a.a.b	ENSGT00990000204023.c.d	ENSGT00990000204023.d.b	ENSGT00940000163913.k	ENSGT00940000159400.l	ENSGT01100000263556.a.a.q.d.j.b	ENSGT01000000214413.b.b.h	ENSGT00950000183196.A.f	ENSGT00940000160229.h	ENSGT00940000160933.d
Common carp reference	MODERN SPECIES	15	ENSCCRG00000062177	ENSCCRG00000050725	ENSCCRG00000050514	cdc42ep2 (ENSCCRG00000056427)	dpf2 (ENSCCRG00000051324)	ENSCCRG00000026948	ENSCCRG00000051682	myo1ca (ENSCCRG00000051374)	panx1b (ENSCCRG00000023474)	ENSCCRG00000075444	ENSCCRG00000082853	tmprss13b (ENSCCRG00000073102)	tmprss4b (ENSCCRG00000078189)	scn4bb (ENSCCRG00000062966)	mpzl2b (ENSCCRG00000049152)	pafah1b2 (ENSCCRG00000049154) ##22	apoa1a (ENSCCRG00000062651)	ENSCCRG00000072044	si:dkey-111e8.4 (ENSCCRG00000030059)	ENSCCRG00000053747	si:ch211-284e13.5 (ENSCCRG00000077563)	gucy2d (ENSCCRG00000019714)	ENSCCRG00000060995	si:ch211-284e13.9 (ENSCCRG00000082512)	ENSCCRG00000074565	slc12a9 (ENSCCRG00000001111)	ENSCCRG00000021187	gnb2 (ENSCCRG00000007646)	mink1 (ENSCCRG00000007701)	ENSCCRG00000069012	chrne (ENSCCRG00000028920)
Golden-line barbel	MODERN SPECIES	261										ins (ENSSGRG00000045969)	ARHGAP35 (ENSSGRG00000045968)	tmprss13b (ENSSGRG00000045967)	ENSSGRG00000045966	scn4bb (ENSSGRG00000045965)	mpzl2b (ENSSGRG00000045964)	pafah1b2 (ENSSGRG00000045963) ##22	apoa1a (ENSSGRG00000045962)	ENSSGRG00000045960	ENSSGRG00000045957	ENSSGRG00000045956	si:ch211-284e13.5 (ENSSGRG00000045955)	gucy2d (ENSSGRG00000045848)	ENSSGRG00000045833	slc12a9 (ENSSGRG00000045798)	ENSSGRG00000045794	ENSSGRG00000045793	mink1 (ENSSGRG00000042136)	PLD2 (ENSSGRG00000041792)	chrne (ENSSGRG00000041766)	atp1b2b (ENSSGRG00000041757)	NYAP1 (ENSSGRG00000041754)
Cyprininae	ANCESTRAL SPECIES		ENSGT00940000158847.d.n	ENSGT00940000161776.g	ENSGT00940000155070.a.b.b.e	ENSGT00940000158450.c.a	ENSGT00940000166539.e	ENSGT01030000234981.b	ENSGT00940000168284.j	ENSGT00940000153972.A.b.c	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d.c	ENSGT01000000215748	ENSGT00940000159197.j.b.a	ENSGT00940000158589.a.b	ENSGT01030000234556.b.b.a.b.c	ENSGT01030000234556.a.a.a.b.a	ENSGT00950000183199.a.a.w.b ##22	ENSGT00950000182929.A.db.a	ENSGT00940000159470.e.a	ENSGT00940000177976.d	ENSGT00940000166953.b	ENSGT01100000263491.a.b.b.c.a.b.b.b	ENSGT00940000164853.a.a.a	ENSGT00990000204023.c	ENSGT00990000204023.d	ENSGT00940000163913.l	ENSGT00940000159400.k	ENSGT01100000263556.a.a.q.d.j.a	ENSGT01000000214413.b.b.g	ENSGT00950000183196.A.e	ENSGT00940000160229.g	ENSGT00940000160933.c
Goldfish	MODERN SPECIES	44	SPTBN2 (ENSCARG00000026294)	cdc42ep2 (ENSCARG00000028671)	dpf2 (ENSCARG00000028682)	ENSCARG00000028761	myo1ca (ENSCARG00000028813)	ENSCARG00000029374	epd (ENSCARG00000029382)	panx1b (ENSCARG00000029416)	ins (ENSCARG00000029514)	ENSCARG00000029588	ENSCARG00000029626	tmprss13b (ENSCARG00000029643)	ENSCARG00000029659	scn4bb (ENSCARG00000029682)	mpzl2b (ENSCARG00000029693)	pafah1b2 (ENSCARG00000029698) ##22	apoa1a (ENSCARG00000029709)	ENSCARG00000029719	si:dkey-111e8.4 (ENSCARG00000029730)	ENSCARG00000029736	gucy2d (ENSCARG00000029780)	ENSCARG00000030371	slc12a9 (ENSCARG00000030405)	ENSCARG00000030456	gnb2 (ENSCARG00000030464)	mink1 (ENSCARG00000030564)	PLD2 (ENSCARG00000031293)	gltpd2b (ENSCARG00000033856)	atp1b2b (ENSCARG00000033862)	ENSCARG00000033912	mogat3b (ENSCARG00000033918)
Cyprininae_a	ANCESTRAL SPECIES		ENSGT00940000158847.d.n	ENSGT00940000161776.g	ENSGT00940000155070.a.b.b.e	ENSGT00940000158450.c.a	ENSGT00940000166539.e	ENSGT01030000234981.b	ENSGT00940000168284.j	ENSGT00940000153972.A.b.c	ENSGT00940000164327.a	ENSGT00940000154553.a.a.d.c	ENSGT01000000215748	ENSGT00940000159197.j.b.a	ENSGT00940000158589.a.b	ENSGT01030000234556.b.b.a.b.c	ENSGT01030000234556.a.a.a.b.a	ENSGT00950000183199.a.a.w.b ##22	ENSGT00950000182929.A.db.a	ENSGT00940000159470.f	ENSGT00940000177976.d	ENSGT00940000166953.b	ENSGT01100000263491.a.b.b.c.a.b.b.b	ENSGT00940000164853.a.a.a	ENSGT00990000204023.c.c	ENSGT00990000204023.d.a	ENSGT00940000163913.l	ENSGT00940000159400.k	ENSGT01100000263556.a.a.q.d.j.a	ENSGT01000000214413.b.b.g	ENSGT00950000183196.A.e	ENSGT00940000160229.g	ENSGT00940000160933.c
Common carp reference	MODERN SPECIES	7	ENSCCRG00000039584	ENSCCRG00000041814	ENSCCRG00000042228	cdc42ep2 (ENSCCRG00000060962)	dpf2 (ENSCCRG00000040168)	ENSCCRG00000079831	myo1ca (ENSCCRG00000023565)	ENSCCRG00000061318	epd (ENSCCRG00000023490)	panx1b (ENSCCRG00000023518)	ENSCCRG00000023463	tmprss13b (ENSCCRG00000055709)	ENSCCRG00000070341	scn4bb (ENSCCRG00000023507)	mpzl2b (ENSCCRG00000042767)	pafah1b2 (ENSCCRG00000063581) ##22	apoa1a (ENSCCRG00000042775)	ENSCCRG00000042779	ENSCCRG00000052876	si:dkey-111e8.4 (ENSCCRG00000055100)	ENSCCRG00000067139	ENSCCRG00000057000	ENSCCRG00000010696	gucy2d (ENSCCRG00000010711)	ENSCCRG00000012755	si:ch211-284e13.9 (ENSCCRG00000055288)	ENSCCRG00000001078	slc12a9 (ENSCCRG00000021178)	ENSCCRG00000007641	gnb2 (ENSCCRG00000055395)	mink1 (ENSCCRG00000082463)
Golden-line barbel	MODERN SPECIES	214	SPTBN2 (ENSSGRG00000033974)	cdc42ep2 (ENSSGRG00000033966)	dpf2 (ENSSGRG00000033535)	ENSSGRG00000033529	myo1ca (ENSSGRG00000033523)	ENSSGRG00000033516	epd (ENSSGRG00000033513)	panx1b (ENSSGRG00000033512)	ins (ENSSGRG00000033504)	ENSSGRG00000033503	fxyd2 (ENSSGRG00000033501)	tmprss13b (ENSSGRG00000033499)	ENSSGRG00000033497	scn4bb (ENSSGRG00000033495)	mpzl2b (ENSSGRG00000033493)	pafah1b2 (ENSSGRG00000033456) ##22	apoa1a (ENSSGRG00000033454)	ENSSGRG00000033453	ENSSGRG00000033451	ENSSGRG00000033450	ENSSGRG00000033448	ENSSGRG00000033445	si:ch211-284e13.5 (ENSSGRG00000033444)	gucy2d (ENSSGRG00000033172)	si:ch211-284e13.11 (ENSSGRG00000033170)	si:ch211-284e13.9 (ENSSGRG00000033169)	ENSSGRG00000033168	slc12a9 (ENSSGRG00000033138)	ENSSGRG00000033136	gnb2 (ENSSGRG00000033111)	mink1 (ENSSGRG00000024001)
Zebrafish	MODERN SPECIES	20	ENSDARG00000035682	SPTBN2 (ENSDARG00000053956)	cdc42ep2 (ENSDARG00000053959)	dpf2 (ENSDARG00000012219)	myo1ca (ENSDARG00000020924)	ENSDARG00000099693	epd (ENSDARG00000103498)	panx1b (ENSDARG00000014910)	ins (ENSDARG00000035350)	ENSDARG00000060297	fxyd2 (ENSDARG00000094561)	tmprss13b (ENSDARG00000077573)	tmprss4b (ENSDARG00000012860)	scn4bb (ENSDARG00000060319)	mpzl2b (ENSDARG00000027345)	pafah1b2 (ENSDARG00000035352) ##22	apoa1a (ENSDARG00000012076)	ENSDARG00000092018	ENSDARG00000094018	si:dkey-111e8.4 (ENSDARG00000093547)	si:dkey-111e8.5 (ENSDARG00000093960)	ENSDARG00000060330	si:ch211-284e13.5 (ENSDARG00000094725)	ENSDARG00000097952	ENSDARG00000092354	gucy2d (ENSDARG00000026820)	ENSDARG00000094492	si:ch211-284e13.11 (ENSDARG00000091997)	si:ch211-284e13.9 (ENSDARG00000093214)	ENSDARG00000031336	slc12a9 (ENSDARG00000060366)
Otomorpha	ANCESTRAL SPECIES	369		ENSGT00390000001474	ENSGT00390000008920.c.b	ENSGT00940000159702	ENSGT00940000164285.b	ENSGT00940000160922	ENSGT00940000156392.a	ENSGT00940000173613	ENSGT00940000158516	ENSGT00730000111265	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00990000204999	ENSGT01080000257333.B	ENSGT00940000157259	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b
Otophysi	ANCESTRAL SPECIES	149	ENSGT00940000167797	ENSGT00940000155439.a.b.a.b	ENSGT00950000183106.a.a.b	ENSGT00950000183063.c.a	ENSGT00940000154648.b	ENSGT00940000153386.B	ENSGT00940000160922	ENSGT00940000156392.a	ENSGT00940000173613	ENSGT00940000158516	ENSGT00730000111265	ENSGT01030000234556.a.a.b	ENSGT00990000205064	ENSGT01080000257333.B	ENSGT00940000157259	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b	ENSGT00390000001474	ENSGT00390000008920.c.b	ENSGT00940000159702	ENSGT00390000001278.a	ENSGT00550000074807.c	ENSGT00940000164977.b	ENSGT00940000161634	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000000417.a.a.b.b
Characiphysae	ANCESTRAL SPECIES	94	ENSGT00940000155439.b	ENSGT00940000155439.a.b.a.a	ENSGT00940000154648.b	ENSGT00940000153386.B	ENSGT00940000160922	ENSGT00940000156392.a	ENSGT00940000173613	ENSGT00940000158516	ENSGT00730000111265	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00940000178863	ENSGT00990000205064	ENSGT01080000257333.B	ENSGT00940000157259.o	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b	ENSGT00390000001474	ENSGT00390000008920.c.b	ENSGT00940000159702	ENSGT00390000001278.a	ENSGT00550000074807.c	ENSGT00940000164977.b	ENSGT00940000161634	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000012058.c.a	ENSGT00990000203615.b.a.b	ENSGT00950000182923.B.a
Characiphysae_b	ANCESTRAL SPECIES	90	ENSGT00940000155439.b	ENSGT00940000155439.a.b.a.a	ENSGT00940000154648.b	ENSGT00940000153386.B	ENSGT00940000160922	ENSGT00940000156392.a	ENSGT00940000173613	ENSGT00940000158516	ENSGT00730000111265	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00940000178863	ENSGT00990000205064	ENSGT01080000257333.B	ENSGT00940000157259.o	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b	ENSGT00390000001474	ENSGT00390000008920.c.b	ENSGT00940000159702	ENSGT00390000001278.a	ENSGT00550000074807.c	ENSGT00940000164977.b	ENSGT00940000161634	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000012058.c.a	ENSGT00990000203615.b.a.b	ENSGT00950000182923.B.a
Characoidei	ANCESTRAL SPECIES	106	ENSGT00950000183063.c.a	ENSGT00940000155439.a.b.a.a	ENSGT00940000154648.b	ENSGT00940000153386.B	ENSGT00940000160922	ENSGT00940000156392.a	ENSGT00940000173613	ENSGT00940000158516	ENSGT00730000111265	ENSGT01030000234556.a.a.b	ENSGT01030000234556.a.a.a.a	ENSGT00940000178863	ENSGT00990000205064	ENSGT01080000257333.B	ENSGT00940000157259.o	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b	ENSGT00390000001474	ENSGT00390000008920.c.b	ENSGT00940000159702	ENSGT00390000001278.a	ENSGT00550000074807.c	ENSGT00940000164977.b	ENSGT00940000160308	ENSGT00390000007686.a	ENSGT00390000012058.c.a	ENSGT00990000203615.b.a.b	ENSGT00950000182923.B.a	ENSGT00940000154981.bb.a.o
Mexicana tetra	MODERN SPECIES		klc3 (ENSAMXG00000009064)	ercc2 (ENSAMXG00000009052)	zgc:154093 (ENSAMXG00000009048)	ZC3H4 (ENSAMXG00000009037)	ENSAMXG00000042567	ENSAMXG00000038334	ENSAMXG00000040555	LSAMP (ENSAMXG00000007640)	gap43 (ENSAMXG00000036239)	ENSAMXG00000007631	MPZL2 (ENSAMXG00000029789)	ENSAMXG00000029410	ENSAMXG00000034924	ENSAMXG00000007621	SIK3 (ENSAMXG00000035205)	PAFAH1B2 (ENSAMXG00000039546) ##22	SIDT2 (ENSAMXG00000020824)	ENSAMXG00000035352	socs9 (ENSAMXG00000030036)	SAMD4B (ENSAMXG00000020905)	GMFG (ENSAMXG00000020913)	paf1 (ENSAMXG00000020925)	psma6l (ENSAMXG00000020935)	ENSAMXG00000020955	ENSAMXG00000020977	DMWD (ENSAMXG00000021009)	efhd1 (ENSAMXG00000035065)	kcnj13 (ENSAMXG00000033074)	ENSAMXG00000035131	GAL3ST2 (ENSAMXG00000040524)	ENSAMXG00000029511
Red-bellied piranha	MODERN SPECIES	948											slc43a1b (ENSPNAG00000005661)	med19b (ENSPNAG00000009783)	tmx2b (ENSPNAG00000009751)	zdhhc5a (ENSPNAG00000009711)	SIK3 (ENSPNAG00000009680)	PAFAH1B2 (ENSPNAG00000009537) ##22
Electric eel	MODERN SPECIES	1275															ENSEEEG00000007026	PAFAH1B2 (ENSEEEG00000007025) ##22	SIDT2 (ENSEEEG00000006958)
Cyprinoidei	ANCESTRAL SPECIES	196								ENSGT00940000158516	ENSGT00730000111265	ENSGT00990000211332	ENSGT01030000234556.a.a.a.a	ENSGT01030000234556.a.a.b	ENSGT00990000205064	ENSGT01080000257333.B	ENSGT00940000157259	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b
Cyprininae	ANCESTRAL SPECIES	746									ENSGT00730000111265.k	ENSGT00990000211332	ENSGT01030000234556.a.a.a.a	ENSGT00990000209956.B	ENSGT00990000205064.b	ENSGT01080000257333.B	ENSGT00940000157259.n	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c.k	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b.b
Goldfish	MODERN SPECIES	6	inppl1a (ENSCARG00000005892)	phox2a (ENSCARG00000006671)	CLPB (ENSCARG00000006682)	stard10 (ENSCARG00000006706)	ARAP1 (ENSCARG00000006769)	ENSCARG00000007198	ENSCARG00000007211	ENSCARG00000007220	ENSCARG00000007225	ENSCARG00000007242	MPZL2 (ENSCARG00000007246)	ENSCARG00000007252	ENSCARG00000007264	ENSCARG00000007273	SIK3 (ENSCARG00000007316)	ENSCARG00000007997 ##22	SIDT2 (ENSCARG00000008051)	ENSCARG00000008780	ENSCARG00000008783	socs9 (ENSCARG00000008790)	paf1 (ENSCARG00000008815)	SAMD4B (ENSCARG00000009041)	psma6l (ENSCARG00000009158)	otx5 (ENSCARG00000009175)	KCNJ10 (ENSCARG00000009181)	ENSCARG00000009184	PSMD2 (ENSCARG00000009206)	ENSCARG00000009654	fam131ab (ENSCARG00000010546)	ENSCARG00000010557	clcn2b (ENSCARG00000010723)
Cyprininae_a	ANCESTRAL SPECIES	580									ENSGT00730000111265.k	ENSGT00990000211332	ENSGT01030000234556.a.a.a.a	ENSGT00990000209956.B	ENSGT00990000205064.b	ENSGT01080000257333.B	ENSGT00940000157259.n	ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c.k	ENSGT00950000183078.b.a.b	ENSGT00940000164285.b.b
Golden-line barbel	MODERN SPECIES	612					ENSSGRG00000016290	gap43 (ENSSGRG00000016291)	gap43 (ENSSGRG00000016292)	ENSSGRG00000016293	ENSSGRG00000016294	MPZL2 (ENSSGRG00000016295)	ENSSGRG00000016296	ENSSGRG00000016297	ENSSGRG00000016298	ENSSGRG00000016299	SIK3 (ENSSGRG00000016300)	ENSSGRG00000016484 ##22	SIDT2 (ENSSGRG00000016526)	socs9 (ENSSGRG00000017943)	paf1 (ENSSGRG00000017945)	SAMD4B (ENSSGRG00000018080)	ENSSGRG00000018123	ENSSGRG00000018125	DMWD (ENSSGRG00000018426)	eif3k (ENSSGRG00000018428)	KBTBD3 (ENSSGRG00000018429)	ENSSGRG00000018430	tomt (ENSSGRG00000018431)	ANAPC15 (ENSSGRG00000018432)	folr (ENSSGRG00000018433)	inppl1a (ENSSGRG00000018452)	phox2a (ENSSGRG00000018592)
Common carp reference	MODERN SPECIES	26										ENSCCRG00000078428	ENSCCRG00000068004	ENSCCRG00000076678	ENSCCRG00000005100	ENSCCRG00000010723	ENSCCRG00000068523	PAFAH1B2 (ENSCCRG00000072653) ##22	ENSCCRG00000009310	ENSCCRG00000009313	SIK3 (ENSCCRG00000009328)	ENSCCRG00000056480	ENSCCRG00000024084	ENSCCRG00000080235	socs9 (ENSCCRG00000067075)	paf1 (ENSCCRG00000070452)	ENSCCRG00000032179	psma6l (ENSCCRG00000032183)	ENSCCRG00000054035	ENSCCRG00000042726	ENSCCRG00000031152	ENSCCRG00000066233	ENSCCRG00000081370
Clupeiformes	ANCESTRAL SPECIES	816																ENSGT00950000183199.a.a.x ##22	ENSGT00390000010091.c
Denticle herring	MODERN SPECIES	10	ENSDCDG00000034354	yap1 (ENSDCDG00000034360)	ENSDCDG00000034363	tbcb (ENSDCDG00000034364)	six5 (ENSDCDG00000034367)	six9 (ENSDCDG00000034370)	qpctla (ENSDCDG00000034373)	SIPA1L3 (ENSDCDG00000034378)	MAP3K10 (ENSDCDG00000034385)	ttc9b (ENSDCDG00000005667)	si:ch211-160d20.3 (ENSDCDG00000005671)	fosb (ENSDCDG00000005679)	ENSDCDG00000005795	znf296 (ENSDCDG00000007509)	clasrp (ENSDCDG00000007576)	ENSDCDG00000007621 ##22	SIDT2 (ENSDCDG00000007635)	ENSDCDG00000007683	si:dkey-260j18.2 (ENSDCDG00000007691)	sars2 (ENSDCDG00000007716)	ppm1da (ENSDCDG00000007766)	timm50 (ENSDCDG00000007769)	dlc (ENSDCDG00000007774)	chp2 (ENSDCDG00000007787)	cox7a1 (ENSDCDG00000007809)	rnaset2l (ENSDCDG00000007963)	supt5h (ENSDCDG00000008204)	ENSDCDG00000010787	ENSDCDG00000010790	ppp1r14ab (ENSDCDG00000010794)	ENSDCDG00000010795
Spotted gar	MODERN SPECIES	665	cfap68 (ENSLOCG00000001435)	cryabb (ENSLOCG00000001451)	hspb2 (ENSLOCG00000001463)	dixdc1a (ENSLOCG00000001475)	dlat (ENSLOCG00000001499)	pih1d2 (ENSLOCG00000001526)	nkapd1 (ENSLOCG00000001540)	gig2p (ENSLOCG00000017859)	ubash3bb (ENSLOCG00000001560)	ENSLOCG00000001595	sb:cb37 (ENSLOCG00000001610)	ENSLOCG00000001706	tbcela (ENSLOCG00000001752)	TECTA (ENSLOCG00000001765)	SIK3 (ENSLOCG00000001801)	pafah1b2 (ENSLOCG00000001838) ##22	SIDT2 (ENSLOCG00000001852)	bicdl2 (ENSLOCG00000001903)	ENSLOCG00000001926	ENSLOCG00000001939	ufc1 (ENSLOCG00000001961)	ENSLOCG00000001990	GRIK4 (ENSLOCG00000002001)	ARHGEF12 (ENSLOCG00000002060)	tlcd5a (ENSLOCG00000002100)	pou2f3 (ENSLOCG00000002109)	OAF (ENSLOCG00000002126)	ENSLOCG00000002144	slc37a2 (ENSLOCG00000002183)	ENSLOCG00000002226	hepacama (ENSLOCG00000002242)
Reedfish	MODERN SPECIES	17	scn4ba (ENSECRG00000012832)	ENSECRG00000012845	ENSECRG00000012862	TMPRSS13 (ENSECRG00000012873)	fxyd6 (ENSECRG00000012895)	ENSECRG00000012904	DSCAML1 (ENSECRG00000012957)	ENSECRG00000013070	ttc36 (ENSECRG00000013088)	C1QB (ENSECRG00000013099)	c1qc (ENSECRG00000013111)	c1qa (ENSECRG00000013125)	ENSECRG00000013135	ENSECRG00000013147	SIK3 (ENSECRG00000013175)	pafah1b2 (ENSECRG00000013233) ##22	SIDT2 (ENSECRG00000013271)	cbln20 (ENSECRG00000013329)	ENSECRG00000013344	tagln2 (ENSECRG00000013360)	pcsk7 (ENSECRG00000013378)	RNF214 (ENSECRG00000013406)	bace1 (ENSECRG00000013437)	arcn1a (ENSECRG00000013463)	hmbsa (ENSECRG00000013492)	ENSECRG00000013529	c2cd2l (ENSECRG00000013539)	dpagt1 (ENSECRG00000013564)	hinfp (ENSECRG00000013581)	ABCG4 (ENSECRG00000013606)	NLRX1 (ENSECRG00000013629)
Elephant shark	MODERN SPECIES	1669									nr6a1a (ENSCMIG00000008564)	olfml2a (ENSCMIG00000008559)	ENSCMIG00000008551	ENSCMIG00000008545	zgc:158412 (ENSCMIG00000008543)	ENSCMIG00000008539	SIK3 (ENSCMIG00000008537)	pafah1b2 (ENSCMIG00000008533) ##22	SIDT2 (ENSCMIG00000008522)	ENSCMIG00000008512	tagln2 (ENSCMIG00000008510)	pcsk7 (ENSCMIG00000008507)	slc37a4a (ENSCMIG00000008503)	ENSCMIG00000008501	ENSCMIG00000008496	cenatac (ENSCMIG00000008494)	rps25 (ENSCMIG00000008491)	trappc4 (ENSCMIG00000008490)	ENSCMIG00000008488	ENSCMIG00000008485	ppp2r1bb (ENSCMIG00000008376)	ALG9 (ENSCMIG00000008330)
Vertebrata	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b ##22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b ##22
Euteleostomi	ANCESTRAL SPECIES	634															ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b
Actinopterygii	ANCESTRAL SPECIES	312															ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00510000047886.b	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000160115	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000160476	ENSGT00940000158852	ENSGT00940000161799
Neopterygii	ANCESTRAL SPECIES	56	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000158871	ENSGT00810000125524	ENSGT00990000203803	ENSGT00940000155107.a.a	ENSGT00940000159465	ENSGT00940000158915	ENSGT00390000001737	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT01050000244848.B.a.b	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00510000047886.b	ENSGT00940000171263	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.b	ENSGT00940000160627	ENSGT00950000183163.a.a	ENSGT00950000182941.a.a.b	ENSGT00940000159398
Osteoglossocephalai	ANCESTRAL SPECIES	4	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H	ENSGT01100000263479.D	ENSGT00940000158852	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000157292.gc	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134
Clupeocephala	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT00940000159323.b	ENSGT00940000165798	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a	ENSGT01030000234575.c.a.a.b	ENSGT01100000263479.I.b	ENSGT00940000158852	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000157292.gc	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Euteleosteomorpha	ANCESTRAL SPECIES	275								ENSGT00990000210261	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b	ENSGT01100000263479.D	ENSGT01100000263479.H.d	ENSGT01100000263479.H.c.a.b
Protacanthopterygii	ANCESTRAL SPECIES	1	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a	ENSGT01050000244848.B.a.b.f.b	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b.j	ENSGT01100000263479.H.c.b.i	ENSGT01100000263956	ENSGT00940000158852.c	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00940000153615.b	ENSGT00950000182805.a.a.b.a.c.a
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	5	ENSGT00980000198994	ENSGT00730000111056.g.c.a	ENSGT00940000154363.A.b	ENSGT00940000161180.n.b	ENSGT01100000263491.a.b.a.a.a.a.b.u.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT00940000160262.j	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.b	ENSGT00940000160262.i	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a.b	ENSGT01050000244848.B.a.b.f.b.b	ENSGT01050000244848.B.b.e	ENSGT00940000161202	ENSGT00940000163576.k.b	ENSGT00950000183199.a.b.a.a ##22	ENSGT00950000183199.a.b.a.b.b.b ##22	ENSGT01100000263479.G.r	ENSGT00940000177666	ENSGT01100000263479.H.c.b.j.b.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b.j.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a.c	ENSGT00390000008714.b.f
Salmoninae_a	ANCESTRAL SPECIES	61	ENSGT00940000153981.B.c.b.a	ENSGT00730000111056.g.c.a	ENSGT00940000154363.A.b	ENSGT00940000161180.n.a	ENSGT00940000163212.B.f	ENSGT00950000182774.b.a.b.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.b	ENSGT00940000160262.i	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a.b	ENSGT01050000244848.B.a.b.f.b.b	ENSGT01050000244848.B.b.e	ENSGT00940000161202	ENSGT00940000163576.k.b	ENSGT00950000183199.a.b.a.a ##22	ENSGT00940000167162	ENSGT00950000183199.a.b.a.b.b.b ##22	ENSGT01100000263479.G.r.b	ENSGT00940000177666
Salmo	ANCESTRAL SPECIES	57	ENSGT00730000111056.g.c.a	ENSGT00940000154363.A.b	ENSGT00940000161180.n.a	ENSGT00940000163212.B.f	ENSGT00940000161180.m.b	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.b	ENSGT00940000160262.i.b	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a.b	ENSGT01050000244848.B.a.b.f.b.b	ENSGT01050000244848.B.b.e	ENSGT00940000161202	ENSGT00940000163576.k.b	ENSGT00950000183199.a.b.a.a ##22	ENSGT00940000167162	ENSGT01100000263479.H.c.a.a.a.b	ENSGT01100000263479.H.c.b.j.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708.q.a	ENSGT00520000055635.c.b.b.g	ENSGT00940000162624.d	ENSGT00940000159960.d.b	ENSGT00940000157292.fc.b.c	ENSGT00940000160115.a.a.d	ENSGT00390000008714.b.e.a.b	ENSGT00980000198710.e.b.a.a.b.b.b	ENSGT00940000153615.b.b	ENSGT00950000182805.a.a.b.a.c.a.c.b
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000118951	ENSSSAG00000003812	ENSSSAG00000013879	ENSSSAG00000037034	ENSSSAG00000036901	ENSSSAG00000102412	ENSSSAG00000110053	ENSSSAG00000003854	ENSSSAG00000003830	ENSSSAG00000115800	ENSSSAG00000051110	cxcr3 (ENSSSAG00000108438)	cxcr3.2 (ENSSSAG00000051147)	ENSSSAG00000112786	cnfn (ENSSSAG00000051162)	ENSSSAG00000121032 ##22	tlr21 (ENSSSAG00000108488)	ceacam1 (ENSSSAG00000095405)	ENSSSAG00000097201 ##22	ENSSSAG00000097508	ENSSSAG00000051209 ##22	ENSSSAG00000112140	ENSSSAG00000094063	ENSSSAG00000051243 ##22	ENSSSAG00000051303	ENSSSAG00000003818	ENSSSAG00000051309	ENSSSAG00000110201	ENSSSAG00000051319	ENSSSAG00000003798	ENSSSAG00000057062
River trout	MODERN SPECIES	22	LIPE (ENSSTUG00000029953)	cd79a (ENSSTUG00000031393)	arhgef1b (ENSSTUG00000031424)	ENSSTUG00000031754	ENSSTUG00000031828	ENSSTUG00000031835	ENSSTUG00000031855	ENSSTUG00000031879	MEGF8 (ENSSTUG00000031908)	trim35-28 (ENSSTUG00000031960)	CXCR3 (ENSSTUG00000031982)	ENSSTUG00000032004	cxcr3.2 (ENSSTUG00000032022)	cnfn (ENSSTUG00000032051)	tlr21 (ENSSTUG00000032061)	PAFAH1B3 (ENSSTUG00000032070) ##22	ENSSTUG00000032134	PAFAH1B3 (ENSSTUG00000032462) ##22	ENSSTUG00000032487	ENSSTUG00000032595	ENSSTUG00000032610	ENSSTUG00000032623	nxpe3 (ENSSTUG00000032643)	GRIK5 (ENSSTUG00000032667)	znf574 (ENSSTUG00000032963)	gsk3ab (ENSSTUG00000032976)	ZNF526 (ENSSTUG00000033070)	ENSSTUG00000033082	ENSSTUG00000033114	dedd1 (ENSSTUG00000033194)	ENSSTUG00000033218
Huchen	MODERN SPECIES	2468														cxcr3.2 (ENSHHUG00000051143)	tlr21 (ENSHHUG00000051156)	PAFAH1B3 (ENSHHUG00000051160) ##22	ENSHHUG00000051164	ENSHHUG00000051170	PAFAH1B3 (ENSHHUG00000051178) ##22	ENSHHUG00000051182
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1393																ENSGT00950000183199.a.b.a.b.a ##22	ENSGT01100000263479.G.q.b.a	ENSGT01100000263479.F
Salmoninae_a	ANCESTRAL SPECIES	640																ENSGT00950000183199.a.b.a.b.a ##22	ENSGT01100000263479.G.q.b.a
Oncorhynchus	ANCESTRAL SPECIES	527																ENSGT00950000183199.a.b.a.b.a ##22	ENSGT01100000263479.G.q.b.a
Oncorhynchus_a	ANCESTRAL SPECIES	679																ENSGT00950000183199.a.b.a.b.a ##22	ENSGT01100000263479.G.q.a
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	4	ENSOKIG00005035461	ENSOKIG00005035452	ENSOKIG00005035315	ENSOKIG00005035297	ERF (ENSOKIG00005035279)	ENSOKIG00005035103	ENSOKIG00005035080	gsk3ab (ENSOKIG00005034799)	znf574 (ENSOKIG00005034607)	GRIK5 (ENSOKIG00005034102)	NXPE3 (ENSOKIG00005034072)	ENSOKIG00005034031	ENSOKIG00005033971	ENSOKIG00005033934	ENSOKIG00005033868	PAFAH1B3 (ENSOKIG00005033825) ##22	ENSOKIG00005033744	ENSOKIG00005033716	cxcr3.2 (ENSOKIG00005033710)	ENSOKIG00005033684	ENSOKIG00005033674	CXCR3 (ENSOKIG00005033655)	ENSOKIG00005015886	MEGF8 (ENSOKIG00005015858)	ENSOKIG00005015832	ENSOKIG00005015816	ENSOKIG00005015799	ENSOKIG00005015787	ENSOKIG00005015772	ENSOKIG00005015761	ENSOKIG00005015754
Coho salmon	MODERN SPECIES	11	ERF (ENSOKIG00005025554)	ENSOKIG00005025573	ENSOKIG00005000016	ENSOKIG00005000028	gsk3ab (ENSOKIG00005000138)	znf574 (ENSOKIG00005000163)	GRIK5 (ENSOKIG00005000322)	ENSOKIG00005000479	ENSOKIG00005000485	ENSOKIG00005000505	ENSOKIG00005000540	ENSOKIG00005000563	ENSOKIG00005000587	ENSOKIG00005000664	PAFAH1B3 (ENSOKIG00005000745) ##22	ENSOKIG00005000750 ##22	ENSOKIG00005000755	tlr21 (ENSOKIG00005000760)	ENSOKIG00005000764	cxcr3.2 (ENSOKIG00005000774)	trim35-28 (ENSOKIG00005000783)	ENSOKIG00005000786	MEGF8 (ENSOKIG00005000808)	ENSOKIG00005000831	ENSOKIG00005000846	ENSOKIG00005000851	ENSOKIG00005000857	arhgef1b (ENSOKIG00005000864)	cd79a (ENSOKIG00005000876)	ENSOKIG00005000883	ENSOKIG00005000891
Chinook salmon	MODERN SPECIES	91											GRIK5 (ENSOTSG00005013858)	nxpe3 (ENSOTSG00005013856)	ENSOTSG00005013850	ENSOTSG00005013849	ENSOTSG00005013847	PAFAH1B3 (ENSOTSG00005013845) ##22	ENSOTSG00005013844	cnfn (ENSOTSG00005013843)	cxcr3.2 (ENSOTSG00005013842)	ENSOTSG00005013841	CXCR3 (ENSOTSG00005013837)
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000026376	ENSOMYG00000026370	ENSOMYG00000047948	ENSOMYG00000000215	ENSOMYG00000000232	GSK3A (ENSOMYG00000000426)	znf574 (ENSOMYG00000000329)	ENSOMYG00000026399	ENSOMYG00000026406	ENSOMYG00000026425	ENSOMYG00000026459	ENSOMYG00000058079	ENSOMYG00000076740	ENSOMYG00000026530	ENSOMYG00000026578	ENSOMYG00000026605 ##22	ENSOMYG00000026681	ENSOMYG00000026870	ENSOMYG00000037793	ENSOMYG00000026881	ENSOMYG00000026910	ENSOMYG00000026938	ENSOMYG00000026951	ENSOMYG00000070124	ENSOMYG00000027090	ENSOMYG00000057453	ENSOMYG00000027228	ENSOMYG00000001605	ENSOMYG00000076742	ENSOMYG00000001655	ENSOMYG00000066984
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1704																ENSGT00950000183199.a.b.a.b.b.a ##22	ENSGT01100000263479.G.q.b.b
Salmoninae_a	ANCESTRAL SPECIES	1034																ENSGT00950000183199.a.b.a.b.b.a ##22	ENSGT00940000154614.ke.b
Salmo	ANCESTRAL SPECIES	77	ENSGT00950000183084.b.a.a.b	ENSGT00950000183126.b.a.u.a	ENSGT00940000165886.g	ENSGT00940000159480.c.a	ENSGT00390000008714.b.e.a.a	ENSGT00940000160115.a.a.c.a.a	ENSGT00940000157292.fc.b.d	ENSGT00940000159960.d.a	ENSGT00940000162624.c	ENSGT00520000055635.c.b.b.h	ENSGT00940000166708.q.b	ENSGT00940000158852.c.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.b	ENSGT01100000263956	ENSGT01100000263479.H.c.b.i.a.b	ENSGT00950000183199.a.b.a.b.b.a ##22	ENSGT00940000154614.ke.b	ENSGT01100000263479.H.c.a.a.a.a.b	ENSGT01100000263479.H.c.b.i.a.a	ENSGT01100000263479.H.c.a.a.a.a.a	ENSGT01100000263479.G.q.a	ENSGT00950000183199.a.b.b ##22	ENSGT00940000163576.k.a	ENSGT01050000244848.B.b.f	ENSGT01050000244848.B.a.b.f.b.a	ENSGT01050000244848.B.a.b.f.a.a	ENSGT00970000193390.c.b.b.b.a.v	ENSGT00940000160262.i.a	ENSGT00950000182774.b.a.b.a.a.b	ENSGT00940000161180.m.a	ENSGT00990000210261
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000003830	ENSSSAG00000115800	ENSSSAG00000051110	cxcr3 (ENSSSAG00000108438)	cxcr3.2 (ENSSSAG00000051147)	ENSSSAG00000112786	cnfn (ENSSSAG00000051162)	ENSSSAG00000121032 ##22	tlr21 (ENSSSAG00000108488)	ceacam1 (ENSSSAG00000095405)	ENSSSAG00000097201 ##22	ENSSSAG00000097508	ENSSSAG00000051209 ##22	ENSSSAG00000112140	ENSSSAG00000094063	ENSSSAG00000051243 ##22	ENSSSAG00000051303	ENSSSAG00000003818	ENSSSAG00000051309	ENSSSAG00000110201	ENSSSAG00000051319	ENSSSAG00000003798	ENSSSAG00000057062	znf574 (ENSSSAG00000003807)	gsk3ab (ENSSSAG00000058347)	ZNF526 (ENSSSAG00000114243)	ENSSSAG00000107687	ENSSSAG00000059116	ENSSSAG00000115246	ENSSSAG00000097009	dedd1 (ENSSSAG00000059305)
Atlantic salmon	MODERN SPECIES	11	mrpl17 (ENSSSAG00000003427)	ENSSSAG00000009921	ENSSSAG00000009810	arhgef1b (ENSSSAG00000083490)	ENSSSAG00000118827	ENSSSAG00000036532	ENSSSAG00000101726	ENSSSAG00000049764	ENSSSAG00000036389	ENSSSAG00000057438	ENSSSAG00000057429	ENSSSAG00000100590	cxcr3.2 (ENSSSAG00000116125)	ENSSSAG00000057405	ENSSSAG00000057366 ##22	ENSSSAG00000057399 ##22	ENSSSAG00000092134	ENSSSAG00000057337	ENSSSAG00000104670	ENSSSAG00000114240	ENSSSAG00000057331	ENSSSAG00000082131	ENSSSAG00000111321	ENSSSAG00000112024	ENSSSAG00000057280	ENSSSAG00000083894	ENSSSAG00000114015	ENSSSAG00000039240	ENSSSAG00000086972	ENSSSAG00000121983	ENSSSAG00000084182
River trout	MODERN SPECIES	30	ZNF526 (ENSSTUG00000038472)	gsk3ab (ENSSTUG00000038504)	znf574 (ENSSTUG00000038565)	GRIK5 (ENSSTUG00000038580)	ENSSTUG00000038699	ENSSTUG00000038708	ENSSTUG00000038725	ENSSTUG00000038734	ENSSTUG00000038750	ENSSTUG00000038837	ENSSTUG00000038897	ENSSTUG00000038910	ENSSTUG00000038942	ENSSTUG00000039144	ENSSTUG00000039146	PAFAH1B3 (ENSSTUG00000039161) ##22	PAFAH1B3 (ENSSTUG00000039237) ##22	cxcr3.2 (ENSSTUG00000039481)	ENSSTUG00000039514	ENSSTUG00000039526	ENSSTUG00000039553	ENSSTUG00000039556	MEGF8 (ENSSTUG00000039573)	ENSSTUG00000039674	ENSSTUG00000039689	ENSSTUG00000039693	ENSSTUG00000039700	arhgef1b (ENSSTUG00000039752)	ENSSTUG00000039948	LIPE (ENSSTUG00000040025)	TMEM145 (ENSSTUG00000040126)
Huchen	MODERN SPECIES	2468											cxcr3.2 (ENSHHUG00000051143)	tlr21 (ENSHHUG00000051156)	PAFAH1B3 (ENSHHUG00000051160) ##22	ENSHHUG00000051164	ENSHHUG00000051170	PAFAH1B3 (ENSHHUG00000051178) ##22	ENSHHUG00000051182
Salmoninae	ANCESTRAL SPECIES	5	ENSGT00730000111056.g.c.a	ENSGT00940000154363.A.b	ENSGT00940000161180.n.b	ENSGT01100000263491.a.b.a.a.a.a.b.u.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT00940000160262.j	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.b	ENSGT00940000160262.i	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a.b	ENSGT01050000244848.B.a.b.f.b.b	ENSGT01050000244848.B.b.e	ENSGT00940000161202	ENSGT00940000163576.k.b	ENSGT00950000183199.a.b.a.a ##22	ENSGT00950000183199.a.b.a.b.b.b ##22	ENSGT01100000263479.G.r	ENSGT00940000177666	ENSGT01100000263479.H.c.b.j.b.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b.j.a	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.a	ENSGT00940000158852.c.b	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a.c	ENSGT00390000008714.b.f	ENSGT00940000153615.b.b
Salmoninae_a	ANCESTRAL SPECIES	61	ENSGT00940000154363.A.b	ENSGT00940000161180.n.a	ENSGT00940000163212.B.f	ENSGT00950000182774.b.a.b.a.a.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.b	ENSGT00940000160262.i	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.a.b	ENSGT01050000244848.B.a.b.f.b.b	ENSGT01050000244848.B.b.e	ENSGT00940000161202	ENSGT00940000163576.k.b	ENSGT00950000183199.a.b.a.a ##22	ENSGT00940000167162	ENSGT00950000183199.a.b.a.b.b.b ##22	ENSGT01100000263479.G.r.b	ENSGT00940000177666
Salmo	ANCESTRAL SPECIES	341																ENSGT00950000183199.a.b.a.b.b.b ##22	ENSGT01100000263479.G.r.b	ENSGT00940000177666	ENSGT01100000263479.H.c.a.a.b
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000102412	ENSSSAG00000110053	ENSSSAG00000003854	ENSSSAG00000003830	ENSSSAG00000115800	ENSSSAG00000051110	cxcr3 (ENSSSAG00000108438)	cxcr3.2 (ENSSSAG00000051147)	ENSSSAG00000112786	cnfn (ENSSSAG00000051162)	ENSSSAG00000121032 ##22	tlr21 (ENSSSAG00000108488)	ceacam1 (ENSSSAG00000095405)	ENSSSAG00000097201 ##22	ENSSSAG00000097508	ENSSSAG00000051209 ##22	ENSSSAG00000112140	ENSSSAG00000094063	ENSSSAG00000051243 ##22	ENSSSAG00000051303	ENSSSAG00000003818	ENSSSAG00000051309	ENSSSAG00000110201	ENSSSAG00000051319	ENSSSAG00000003798	ENSSSAG00000057062	znf574 (ENSSSAG00000003807)	gsk3ab (ENSSSAG00000058347)	ZNF526 (ENSSSAG00000114243)	ENSSSAG00000107687	ENSSSAG00000059116
Atlantic salmon	MODERN SPECIES	24	ENSSSAG00000037034	ENSSSAG00000036901	ENSSSAG00000102412	ENSSSAG00000110053	ENSSSAG00000003854	ENSSSAG00000003830	ENSSSAG00000115800	ENSSSAG00000051110	cxcr3 (ENSSSAG00000108438)	cxcr3.2 (ENSSSAG00000051147)	ENSSSAG00000112786	cnfn (ENSSSAG00000051162)	ENSSSAG00000121032 ##22	tlr21 (ENSSSAG00000108488)	ceacam1 (ENSSSAG00000095405)	ENSSSAG00000097201 ##22	ENSSSAG00000097508	ENSSSAG00000051209 ##22	ENSSSAG00000112140	ENSSSAG00000094063	ENSSSAG00000051243 ##22	ENSSSAG00000051303	ENSSSAG00000003818	ENSSSAG00000051309	ENSSSAG00000110201	ENSSSAG00000051319	ENSSSAG00000003798	ENSSSAG00000057062	znf574 (ENSSSAG00000003807)	gsk3ab (ENSSSAG00000058347)	ZNF526 (ENSSSAG00000114243)
River trout	MODERN SPECIES	22	arhgef1b (ENSSTUG00000031424)	ENSSTUG00000031754	ENSSTUG00000031828	ENSSTUG00000031835	ENSSTUG00000031855	ENSSTUG00000031879	MEGF8 (ENSSTUG00000031908)	trim35-28 (ENSSTUG00000031960)	CXCR3 (ENSSTUG00000031982)	ENSSTUG00000032004	cxcr3.2 (ENSSTUG00000032022)	cnfn (ENSSTUG00000032051)	tlr21 (ENSSTUG00000032061)	PAFAH1B3 (ENSSTUG00000032070) ##22	ENSSTUG00000032134	PAFAH1B3 (ENSSTUG00000032462) ##22	ENSSTUG00000032487	ENSSTUG00000032595	ENSSTUG00000032610	ENSSTUG00000032623	nxpe3 (ENSSTUG00000032643)	GRIK5 (ENSSTUG00000032667)	znf574 (ENSSTUG00000032963)	gsk3ab (ENSSTUG00000032976)	ZNF526 (ENSSTUG00000033070)	ENSSTUG00000033082	ENSSTUG00000033114	dedd1 (ENSSTUG00000033194)	ENSSTUG00000033218	ENSSTUG00000033224	ENSSTUG00000033229
Huchen	MODERN SPECIES	1457	ENSHHUG00000043725	ENSHHUG00000043722	ENSHHUG00000043717	ENSHHUG00000043715	ENSHHUG00000043709	ENSHHUG00000043705	trim35-28 (ENSHHUG00000043703)	CXCR3 (ENSHHUG00000043701)	ENSHHUG00000043700	cxcr3.2 (ENSHHUG00000043699)	ENSHHUG00000043698	tlr21 (ENSHHUG00000043697)	PAFAH1B3 (ENSHHUG00000043695) ##22	ENSHHUG00000043692	ENSHHUG00000043659	PAFAH1B3 (ENSHHUG00000043657) ##22
Salmoninae	ANCESTRAL SPECIES	1011												ENSGT01050000244848.B.a.b.f.a.a	ENSGT01050000244848.B.a.b.f.b.a	ENSGT01050000244848.B.b.f	ENSGT00940000163576.l	ENSGT00950000183199.a.b.b ##22	ENSGT01100000263479.E
Salmoninae_a	ANCESTRAL SPECIES	204												ENSGT01050000244848.B.a.b.f.a.a	ENSGT01050000244848.B.a.b.f.b.a	ENSGT01050000244848.B.b.f	ENSGT00940000163576.l	ENSGT00950000183199.a.b.b ##22	ENSGT01100000263479.H.c.b.i.a.b	ENSGT01100000263956	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.b	ENSGT00940000158852.c.a
Salmo	ANCESTRAL SPECIES	77	ENSGT00950000183007.b.e.a.e.b	ENSGT01050000244883.B.c.b.b.a.a.a.b	ENSGT01050000244883.B.c.b.b.a.a.b.a.b	ENSGT00390000010698.z.b	ENSGT00940000153981.B.d.b	ENSGT00730000111056.g.c.b	ENSGT00990000210261	ENSGT00940000161180.m.a	ENSGT00950000182774.b.a.b.a.a.b	ENSGT00940000160262.i.a	ENSGT00970000193390.c.b.b.b.a.v	ENSGT01050000244848.B.a.b.f.a.a	ENSGT01050000244848.B.a.b.f.b.a	ENSGT01050000244848.B.b.f	ENSGT00940000163576.k.a	ENSGT00950000183199.a.b.b ##22	ENSGT01100000263479.G.q.a	ENSGT01100000263479.H.c.a.a.a.a.a	ENSGT01100000263479.H.c.b.i.a.a	ENSGT01100000263479.H.c.a.a.a.a.b	ENSGT00940000154614.ke.b	ENSGT00950000183199.a.b.a.b.b.a ##22	ENSGT01100000263479.H.c.b.i.a.b	ENSGT01100000263956	ENSGT00950000182866.D.d.a.c.a.i.a.b.a.b	ENSGT00940000158852.c.a	ENSGT00940000166708.q.b	ENSGT00520000055635.c.b.b.h	ENSGT00940000162624.c	ENSGT00940000159960.d.a	ENSGT00940000157292.fc.b.d
River trout	MODERN SPECIES	30	mrpl17 (ENSSTUG00000040300)	TMEM145 (ENSSTUG00000040126)	LIPE (ENSSTUG00000040025)	ENSSTUG00000039948	arhgef1b (ENSSTUG00000039752)	ENSSTUG00000039700	ENSSTUG00000039693	ENSSTUG00000039689	ENSSTUG00000039674	MEGF8 (ENSSTUG00000039573)	ENSSTUG00000039556	ENSSTUG00000039553	ENSSTUG00000039526	ENSSTUG00000039514	cxcr3.2 (ENSSTUG00000039481)	PAFAH1B3 (ENSSTUG00000039237) ##22	PAFAH1B3 (ENSSTUG00000039161) ##22	ENSSTUG00000039146	ENSSTUG00000039144	ENSSTUG00000038942	ENSSTUG00000038910	ENSSTUG00000038897	ENSSTUG00000038837	ENSSTUG00000038750	ENSSTUG00000038734	ENSSTUG00000038725	ENSSTUG00000038708	ENSSTUG00000038699	GRIK5 (ENSSTUG00000038580)	znf574 (ENSSTUG00000038565)	gsk3ab (ENSSTUG00000038504)
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000093034	mrpl17 (ENSSSAG00000003427)	ENSSSAG00000009921	ENSSSAG00000009810	arhgef1b (ENSSSAG00000083490)	ENSSSAG00000118827	ENSSSAG00000036532	ENSSSAG00000101726	ENSSSAG00000049764	ENSSSAG00000036389	ENSSSAG00000057438	ENSSSAG00000057429	ENSSSAG00000100590	cxcr3.2 (ENSSSAG00000116125)	ENSSSAG00000057405	ENSSSAG00000057366 ##22	ENSSSAG00000057399 ##22	ENSSSAG00000092134	ENSSSAG00000057337	ENSSSAG00000104670	ENSSSAG00000114240	ENSSSAG00000057331	ENSSSAG00000082131	ENSSSAG00000111321	ENSSSAG00000112024	ENSSSAG00000057280	ENSSSAG00000083894	ENSSSAG00000114015	ENSSSAG00000039240	ENSSSAG00000086972	ENSSSAG00000121983
Oncorhynchus	ANCESTRAL SPECIES	53	ENSGT01050000244883.C.g.b.d	ENSGT01050000244883.B.c.b.b.a.a.a.b.a	ENSGT00390000010698.y.b	ENSGT00940000153981.B.c.b.a	ENSGT00730000111056.g.d.a	ENSGT00940000154363.A.b	ENSGT00940000161180.m.a	ENSGT00940000163212.B.e.b	ENSGT00950000182774.b.a.b.a.a.a.b	ENSGT01100000263491.a.b.a.a.a.a.b.u.a.a.a.b	ENSGT00940000160262.i.c	ENSGT01030000234583.a.a.c.a.a.t.b	ENSGT01050000244848.B.a.b.f.b.b.d	ENSGT01050000244848.B.b.f	ENSGT00940000163576.l	ENSGT00950000183199.a.b.b ##22	ENSGT00940000158852.c.a	ENSGT00940000166708.o.b	ENSGT00520000055635.c.b.b.j	ENSGT00940000162624.c	ENSGT00940000159960.d.d	ENSGT00940000157292.fc.b.e	ENSGT00940000160115.a.a.c.a.a	ENSGT00940000153675.a.a.a.a.b.l.b	ENSGT00940000166118.c	ENSGT00940000155088.b.a.b.i.b	ENSGT00940000159480.d.b	ENSGT00940000159480.d.a.a.a	ENSGT00940000165886.g	ENSGT00950000183126.b.a.u.a.b	ENSGT00950000183084.b.a.a.a.e.a
Oncorhynchus_a	ANCESTRAL SPECIES	105	ENSGT00940000153981.B.c.b.a	ENSGT00730000111056.g.d.a	ENSGT00940000154363.A.b	ENSGT00940000161180.n.a	ENSGT00940000157292.gc	ENSGT00940000161180.m.a	ENSGT00940000163212.B.e.b	ENSGT00950000182774.b.a.b.a.a.a.b	ENSGT00940000157337.b.h	ENSGT01100000263491.a.b.a.a.a.a.b.u.b.a.a	ENSGT00940000160262.i.c	ENSGT01050000244848.B.a.b.f.a.a	ENSGT01050000244848.B.a.b.f.b.b.d	ENSGT01050000244848.B.b.f	ENSGT00940000163576.l	ENSGT00950000183199.a.b.b ##22	ENSGT01100000263479.G.r.b	ENSGT01100000263479.F
Coho salmon	MODERN SPECIES	11	ENSOKIG00005000883	cd79a (ENSOKIG00005000876)	arhgef1b (ENSOKIG00005000864)	ENSOKIG00005000857	ENSOKIG00005000851	ENSOKIG00005000846	ENSOKIG00005000831	MEGF8 (ENSOKIG00005000808)	ENSOKIG00005000786	trim35-28 (ENSOKIG00005000783)	cxcr3.2 (ENSOKIG00005000774)	ENSOKIG00005000764	tlr21 (ENSOKIG00005000760)	ENSOKIG00005000755	ENSOKIG00005000750 ##22	PAFAH1B3 (ENSOKIG00005000745) ##22	ENSOKIG00005000664	ENSOKIG00005000587	ENSOKIG00005000563	ENSOKIG00005000540	ENSOKIG00005000505	ENSOKIG00005000485	ENSOKIG00005000479	GRIK5 (ENSOKIG00005000322)	znf574 (ENSOKIG00005000163)	gsk3ab (ENSOKIG00005000138)	ENSOKIG00005000028	ENSOKIG00005000016	ENSOKIG00005025573	ERF (ENSOKIG00005025554)	POU2F2 (ENSOKIG00005025518)
Chinook salmon	MODERN SPECIES	22	LIPE (ENSOTSG00005025801)	cd79a (ENSOTSG00005025798)	arhgef1b (ENSOTSG00005025775)	ENSOTSG00005025758	ENSOTSG00005025753	ENSOTSG00005025752	ENSOTSG00005025750	MEGF8 (ENSOTSG00005025743)	ENSOTSG00005025661	ENSOTSG00005002396	CXCR3 (ENSOTSG00005002388)	CXCR3 (ENSOTSG00005002383)	cxcr3.2 (ENSOTSG00005002379)	tlr21 (ENSOTSG00005002373)	ENSOTSG00005002369	PAFAH1B3 (ENSOTSG00005002360) ##22	ENSOTSG00005002195	ENSOTSG00005002181	ENSOTSG00005002170	ENSOTSG00005002151	znf574 (ENSOTSG00005002123)	gsk3ab (ENSOTSG00005002111)	ZNF526 (ENSOTSG00005002106)	ENSOTSG00005002094	ptpn6 (ENSOTSG00005001286)	rbp5 (ENSOTSG00005001275)	ENSOTSG00005001272	ENSOTSG00005001264	ENSOTSG00005001260	ENSOTSG00005001257	ENSOTSG00005001251
Rainbow trout	MODERN SPECIES	21	cd79a (ENSOMYG00000001837)	ENSOMYG00000076966	arhgef1b (ENSOMYG00000001779)	ENSOMYG00000001689	ENSOMYG00000027262	ENSOMYG00000001597	ENSOMYG00000027226	ENSOMYG00000001405	ENSOMYG00000001050	ENSOMYG00000059125	cxcr3.1 (ENSOMYG00000001032)	ENSOMYG00000066824	cxcr3.2 (ENSOMYG00000001013)	tlr21 (ENSOMYG00000000991)	ENSOMYG00000077764	ENSOMYG00000000972 ##22	ENSOMYG00000000932	ENSOMYG00000000841	ENSOMYG00000058381	ENSOMYG00000068517	ENSOMYG00000000823	ENSOMYG00000000779	ENSOMYG00000068060	ENSOMYG00000000710	ENSOMYG00000065091	ENSOMYG00000058775	znf574 (ENSOMYG00000000443)	gsk3ab (ENSOMYG00000000310)	ENSOMYG00000000406	ENSOMYG00000000394	ENSOMYG00000064903
Huchen	MODERN SPECIES	1457			ENSHHUG00000043727	ENSHHUG00000043725	ENSHHUG00000043722	ENSHHUG00000043717	ENSHHUG00000043715	ENSHHUG00000043709	ENSHHUG00000043705	trim35-28 (ENSHHUG00000043703)	CXCR3 (ENSHHUG00000043701)	ENSHHUG00000043700	cxcr3.2 (ENSHHUG00000043699)	ENSHHUG00000043698	tlr21 (ENSHHUG00000043697)	PAFAH1B3 (ENSHHUG00000043695) ##22	ENSHHUG00000043692	ENSHHUG00000043659	PAFAH1B3 (ENSHHUG00000043657) ##22
Northern pike	MODERN SPECIES	19	mrpl17 (ENSELUG00000020191)	TMEM145 (ENSELUG00000020148)	ENSELUG00000019974	cd79a (ENSELUG00000031785)	arhgef1b (ENSELUG00000019442)	ENSELUG00000019253	ENSELUG00000032321	ENSELUG00000019204	MEGF8 (ENSELUG00000019161)	trim35-28 (ENSELUG00000019085)	CXCR3 (ENSELUG00000019067)	ENSELUG00000019065	cxcr3.2 (ENSELUG00000034089)	cnfn (ENSELUG00000019052)	tlr21 (ENSELUG00000019043)	pafah1b3 (ENSELUG00000019030) ##22	ENSELUG00000019003	ENSELUG00000018956	ENSELUG00000030022	GRIK5 (ENSELUG00000018932)	znf574 (ENSELUG00000018826)	gsk3ab (ENSELUG00000018799)	ZNF526 (ENSELUG00000018737)	ENSELUG00000018666	ERF (ENSELUG00000000796)	ENSELUG00000034402	ENSELUG00000000792	dedd1 (ENSELUG00000018333)	ENSELUG00000031348	ENSELUG00000018273	ENSELUG00000018251
Acanthomorphata	ANCESTRAL SPECIES	38	ENSGT00950000183182.a.a	ENSGT00940000156592	ENSGT00940000153295.a.a	ENSGT00390000016054.b.i	ENSGT00390000015364.b	ENSGT00940000157291	ENSGT00940000156762	ENSGT00990000203803	ENSGT00940000155107.a.a.a	ENSGT00940000159465	ENSGT00940000158915	ENSGT00390000001737	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.H.c.b	ENSGT00390000004808.e	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.b	ENSGT00940000160627	ENSGT00950000183163.a.a.ab	ENSGT00950000182941.a.a.b.e.a.b	ENSGT00940000159398	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a
Cod	MODERN SPECIES	2	ENSGMOG00000013583	ENSGMOG00000024021	ENSGMOG00000018939	ENSGMOG00000018935	ENSGMOG00000013744	arhgef1b (ENSGMOG00000018768)	ENSGMOG00000036091	ENSGMOG00000017060	ENSGMOG00000016971	ENSGMOG00000016957	ENSGMOG00000016951	cxcr3.3 (ENSGMOG00000024653)	cxcr3.2 (ENSGMOG00000034379)	ENSGMOG00000028925	ENSGMOG00000030501	pafah1b3 (ENSGMOG00000016325) ##22	ENSGMOG00000023465	ENSGMOG00000022804	ENSGMOG00000026124	ENSGMOG00000023529	grik5 (ENSGMOG00000005066)	znf574 (ENSGMOG00000005098)	gsk3ab (ENSGMOG00000005115)	ENSGMOG00000035157	ENSGMOG00000023483	ENSGMOG00000027163	ENSGMOG00000025253	ENSGMOG00000032602	dedd1 (ENSGMOG00000014734)	rabac1 (ENSGMOG00000014746)	ENSGMOG00000014788
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.d	ENSGT00940000177666	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a
Pinecone sodierfish	MODERN SPECIES	7	TMEM145 (ENSMMDG00005020246)	ENSMMDG00005020232	LIPE (ENSMMDG00005020177)	cd79a (ENSMMDG00005020174)	ENSMMDG00005020170	ENSMMDG00005020167	ENSMMDG00005020166	ENSMMDG00005020164	MEGF8 (ENSMMDG00005020022)	trim35-28 (ENSMMDG00005020013)	CXCR3 (ENSMMDG00005019933)	cxcr3.3 (ENSMMDG00005019922)	cxcr3.2 (ENSMMDG00005019918)	cnfn (ENSMMDG00005019917)	tlr21 (ENSMMDG00005019915)	pafah1b3 (ENSMMDG00005019909) ##22	ENSMMDG00005019904	ENSMMDG00005019899	ENSMMDG00005019894	ENSMMDG00005019891	ENSMMDG00005019883	ENSMMDG00005019878	GRIK5 (ENSMMDG00005019875)	znf574 (ENSMMDG00005019871)	gsk3ab (ENSMMDG00005019661)	ENSMMDG00005019654	ENSMMDG00005019653	ENSMMDG00005019305	ENSMMDG00005019297	POU2F2 (ENSMMDG00005019292)	dedd1 (ENSMMDG00005019287)
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.d	ENSGT00940000177666	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a
Tiger tail seahorse	MODERN SPECIES	464	ENSHCOG00000011224	ENSHCOG00000011378	mrpl17 (ENSHCOG00000011399)	TMEM145 (ENSHCOG00000011410)	LIPE (ENSHCOG00000011444)	cd79a (ENSHCOG00000011454)	arhgef1b (ENSHCOG00000011475)	ENSHCOG00000011485	ENSHCOG00000011497	MEGF8 (ENSHCOG00000011566)	ENSHCOG00000011586	cxcr3.3 (ENSHCOG00000011591)	cxcr3.2 (ENSHCOG00000011598)	cnfn (ENSHCOG00000011609)	tlr21 (ENSHCOG00000011614)	pafah1b3 (ENSHCOG00000011626) ##22	ENSHCOG00000011667	ENSHCOG00000011803	ENSHCOG00000011822	grik5 (ENSHCOG00000011855)	znf574 (ENSHCOG00000011906)	gsk3ab (ENSHCOG00000011920)	ZNF526 (ENSHCOG00000011925)	ENSHCOG00000011943	ENSHCOG00000011951	POU2F2 (ENSHCOG00000011963)	dedd1 (ENSHCOG00000011975)	rabac1 (ENSHCOG00000011980)	ENSHCOG00000011997	ENSHCOG00000012011	ENSHCOG00000012072
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.d	ENSGT01100000263479.D	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a.e.a	ENSGT00940000177666	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT00940000177666	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553	ENSGT00390000008714.b	ENSGT00390000010549
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a.h.b.b	ENSGT01100000263479.H.c.a.a.e.a.h.b.a.b	ENSGT00940000177666	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.d	ENSGT01050000244848.B.a.b.f.c.a	ENSGT01050000244848.B.a.b.f.c.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a.h.b.a.a	ENSGT01100000263479.H.c.a.a.e.a.h.a	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553	ENSGT00390000008714.b
Poeciliinae	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.d	ENSGT01050000244848.B.a.b.f.c.a	ENSGT01050000244848.B.a.b.f.c.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.e.a.h.a	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a	ENSGT00940000165134.a.b
Poecilia	ANCESTRAL SPECIES		ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.d	ENSGT01050000244848.B.a.b.f.c.a	ENSGT01050000244848.B.a.b.f.c.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a.h.b.a.a	ENSGT01100000263479.H.c.a.a.e.a.h.a.b	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a
NAME_6	ANCESTRAL SPECIES	69	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.d	ENSGT01050000244848.B.a.b.f.c.a	ENSGT01050000244848.B.a.b.f.c.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G
Amazon molly	MODERN SPECIES	310	mrpl17 (ENSPFOG00000003148)	TMEM145 (ENSPFOG00000003035)	LIPE (ENSPFOG00000002866)	cd79a (ENSPFOG00000002835)	arhgef1b (ENSPFOG00000002537)	ENSPFOG00000002490	ENSPFOG00000002480	MEGF8 (ENSPFOG00000002061)	trim35-28 (ENSPFOG00000001888)	CXCR3 (ENSPFOG00000001840)	ENSPFOG00000024072	cxcr3.3 (ENSPFOG00000001831)	cxcr3.2 (ENSPFOG00000020317)	cnfn (ENSPFOG00000001822)	tlr21 (ENSPFOG00000020316)	pafah1b3 (ENSPFOG00000001779) ##22	ENSPFOG00000001667	ENSPFOG00000024564	ENSPFOG00000024263	ENSPFOG00000023841
Sailfin molly	MODERN SPECIES	54	ENSPLAG00000007887	cd79a (ENSPLAG00000007891)	arhgef1b (ENSPLAG00000007901)	ENSPLAG00000007912	ENSPLAG00000007919	MEGF8 (ENSPLAG00000008094)	trim35-28 (ENSPLAG00000008125)	ENSPLAG00000008132	CXCR3 (ENSPLAG00000008151)	ENSPLAG00000008167	cxcr3.3 (ENSPLAG00000008171)	cxcr3.2 (ENSPLAG00000008179)	cnfn (ENSPLAG00000008192)	tlr21 (ENSPLAG00000008242)	ENSPLAG00000008257	pafah1b3 (ENSPLAG00000008282) ##22	ENSPLAG00000008318	ENSPLAG00000008334	ENSPLAG00000008343
Guppy	MODERN SPECIES	446	mrpl17 (ENSPREG00000014661)	TMEM145 (ENSPREG00000014648)	ENSPREG00000014618	cd79a (ENSPREG00000014580)	arhgef1b (ENSPREG00000014479)	ENSPREG00000014431	ENSPREG00000014406	MEGF8 (ENSPREG00000014260)	CXCR3 (ENSPREG00000014240)	CXCR3 (ENSPREG00000014237)	ENSPREG00000014225	cxcr3.2 (ENSPREG00000014218)	cnfn (ENSPREG00000014213)	tlr21 (ENSPREG00000014195)	cxcr3.3 (ENSPREG00000014182)	pafah1b3 (ENSPREG00000014160) ##22	ENSPREG00000014138	ENSPREG00000014093	ENSPREG00000014059	ENSPREG00000014031	ENSPREG00000014021	ENSPREG00000013999	ENSPREG00000013968	GRIK5 (ENSPREG00000013939)	znf574 (ENSPREG00000013888)	gsk3ab (ENSPREG00000013855)	ENSPREG00000013836	ENSPREG00000013757	ERF (ENSPREG00000013694)	ENSPREG00000013636	dedd1 (ENSPREG00000013603)
Platyfish	MODERN SPECIES	17	ENSXMAG00000006757	cd79a (ENSXMAG00000006774)	arhgef1b (ENSXMAG00000006776)	ENSXMAG00000024662	ENSXMAG00000006807	MEGF8 (ENSXMAG00000006811)	trim35-28 (ENSXMAG00000006845)	CXCR3 (ENSXMAG00000006850)	ENSXMAG00000024133	ENSXMAG00000029646	cxcr3.3 (ENSXMAG00000006856)	cxcr3.2 (ENSXMAG00000006858)	cnfn (ENSXMAG00000010770)	tlr21 (ENSXMAG00000010772)	ENSXMAG00000028662	pafah1b3 (ENSXMAG00000010774) ##22	ENSXMAG00000010786	ENSXMAG00000027323	ENSXMAG00000010791	ENSXMAG00000026547	ENSXMAG00000029163	ENSXMAG00000025791	ENSXMAG00000027785	GRIK5 (ENSXMAG00000010792)	znf574 (ENSXMAG00000010807)	gsk3ab (ENSXMAG00000010809)	ENSXMAG00000021247	ZNF526 (ENSXMAG00000010814)	ENSXMAG00000028190	ERF (ENSXMAG00000010816)	ENSXMAG00000010823
NAME_4	ANCESTRAL SPECIES	126	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.d	ENSGT01050000244848.B.a.b.f.c.a	ENSGT01050000244848.B.a.b.f.c.b	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a.g.b
Mummichog	MODERN SPECIES	2482	ENSFHEG00000006816	cd79a (ENSFHEG00000006823)	ENSFHEG00000006852	arhgef1b (ENSFHEG00000006899)	ENSFHEG00000006918	ENSFHEG00000006920	MEGF8 (ENSFHEG00000007096)	trim35-28 (ENSFHEG00000007113)	ENSFHEG00000007128	CXCR3 (ENSFHEG00000007132)	CXCR3 (ENSFHEG00000007141)	cxcr3.3 (ENSFHEG00000007158)	cxcr3.2 (ENSFHEG00000007174)	cnfn (ENSFHEG00000007179)	tlr21 (ENSFHEG00000007187)	pafah1b3 (ENSFHEG00000007220) ##22	ENSFHEG00000007259	ENSFHEG00000007287	ENSFHEG00000007297
Sheepshead minnow	MODERN SPECIES	1054					DPY19L3 (ENSCVAG00000007539)	MEGF8 (ENSCVAG00000007669)	trim35-28 (ENSCVAG00000007680)	CXCR3 (ENSCVAG00000007688)	CXCR3 (ENSCVAG00000007692)	ENSCVAG00000007703	ENSCVAG00000007706	cxcr3.2 (ENSCVAG00000000210)	cnfn (ENSCVAG00000007714)	tlr21 (ENSCVAG00000007722)	ENSCVAG00000007734	pafah1b3 (ENSCVAG00000007751) ##22	ENSCVAG00000007762	ENSCVAG00000007769	ENSCVAG00000007802	ENSCVAG00000007815
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a.h.b.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00970000196884.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a	ENSGT00940000165134.a.b
Mangrove rivulus	MODERN SPECIES	33	TMEM145 (ENSKMAG00000011187)	ENSKMAG00000011016	cd79a (ENSKMAG00000010918)	arhgef1b (ENSKMAG00000010859)	ENSKMAG00000010824	ENSKMAG00000010810	MEGF8 (ENSKMAG00000010690)	trim35-28 (ENSKMAG00000010647)	CXCR3 (ENSKMAG00000010623)	CXCR3 (ENSKMAG00000010605)	ENSKMAG00000010590	cxcr3.2 (ENSKMAG00000010579)	cnfn (ENSKMAG00000010566)	tlr21 (ENSKMAG00000010548)	ENSKMAG00000010537	pafah1b3 (ENSKMAG00000010509) ##22	ENSKMAG00000010465	ENSKMAG00000010394	ENSKMAG00000010305	ENSKMAG00000010263	GRIK5 (ENSKMAG00000010219)	znf574 (ENSKMAG00000010186)	gsk3ab (ENSKMAG00000010150)	ENSKMAG00000010133	ENSKMAG00000010116	ENSKMAG00000010054	ERF (ENSKMAG00000010028)	ENSKMAG00000009941	dedd1 (ENSKMAG00000009886)	rabac1 (ENSKMAG00000009847)	ENSKMAG00000009734
Turquoise killifish	DUPLICATION
Turquoise killifish	DUPLICATION
Turquoise killifish	DUPLICATION
Turquoise killifish	DUPLICATION
Turquoise killifish	DUPLICATION
Turquoise killifish	MODERN SPECIES	1624	hoxc8a (ENSNFUG00015017494)	hoxc6a (ENSNFUG00015017499)	hoxc5a (ENSNFUG00015017502)	HOXC4A (ENSNFUG00015017504)	ENSNFUG00015017508	HOXC1A (ENSNFUG00015017513)	cbx5 (ENSNFUG00015017517)	Nfu_g_1_010245 (ENSNFUG00015017528)	NFE2 (ENSNFUG00015017540)	copz1 (ENSNFUG00015017566)	ZNF740 (ENSNFUG00015017714)	csad (ENSNFUG00015017729)	zgc:174906 (ENSNFUG00015017812)	ENSNFUG00015017819	Nfu_g_1_010292 (ENSNFUG00015017821)	ENSNFUG00015017824 ##22	RHOC (ENSNFUG00015017830)	MOV10 (ENSNFUG00015017875)	ENSNFUG00015018189	ENSNFUG00015018195	EBP (ENSNFUG00015018200)	CCDC115 (ENSNFUG00015018203)	Nfu_g_1_010288 (ENSNFUG00015018208)	apobec2b (ENSNFUG00015018212)	ENSNFUG00015018220	ENSNFUG00015018233	mybpha (ENSNFUG00015018236)	NAV1 (ENSNFUG00015018250)	ENSNFUG00015018268	CSRP1A (ENSNFUG00015018271)	phlda3 (ENSNFUG00015004777)
Turquoise killifish	MODERN SPECIES	1625																ENSNFUG00015023784 ##22	LRFN5 (ENSNFUG00015023782)	SPTLC2 (ENSNFUG00015023316)	ENSNFUG00015023281	ENSNFUG00015023275	metap1 (ENSNFUG00015023254)	eif4eb (ENSNFUG00015023239)	LINGO2 (ENSNFUG00015023236)	C13H9ORF72 (ENSNFUG00015023224)	sntg2 (ENSNFUG00015023042)	TPO (ENSNFUG00015022966)	ENSNFUG00015022956	PTF1A (ENSNFUG00015022952)	ENSNFUG00015022948	KHDRBS1A (ENSNFUG00015022945)	zbtb8os (ENSNFUG00015022942)
Turquoise killifish	MODERN SPECIES	1611	EDF1 (ENSNFUG00015000783)	CABZ01072929.1 (ENSNFUG00015000787)	ENSNFUG00015000789	CABZ01079427.1 (ENSNFUG00015000795)	ZNF462 (ENSNFUG00015000800)	KLF4 (ENSNFUG00015000807)	RAD23B (ENSNFUG00015000812)	ENSNFUG00015000821	nop14 (ENSNFUG00015000830)	SNCA (ENSNFUG00015000931)	add1 (ENSNFUG00015000940)	SEMA4D (ENSNFUG00015000961)	SHC3 (ENSNFUG00015000996)	FP085391.2 (ENSNFUG00015001008)	ZBTB7C (ENSNFUG00015001010)	ENSNFUG00015001020 ##22	CTIF (ENSNFUG00015001029)	ENSNFUG00015001041	ENSNFUG00015001045	smad7 (ENSNFUG00015001049)	DYM (ENSNFUG00015001060)	C18orf32 (ENSNFUG00015001092)	rad1 (ENSNFUG00015001100)	bxdc2 (ENSNFUG00015001111)	dnajc21 (ENSNFUG00015001126)	ENSNFUG00015001153	ENSNFUG00015001154	AGXT2 (ENSNFUG00015001175)	prlra (ENSNFUG00015001210)	NEDD4L (ENSNFUG00015001291)	ENSNFUG00015001580
Turquoise killifish	MODERN SPECIES	1610	WU (ENSNFUG00015004238)	ttc9c (ENSNFUG00015004232)	ENSNFUG00015004228	dpf2l (ENSNFUG00015004214)	ENSNFUG00015004198	ZDHHC24 (ENSNFUG00015004190)	POLA2 (ENSNFUG00015004179)	ENSNFUG00015004173	ENSNFUG00015004165	FP245511.1 (ENSNFUG00015004161)	SLC16A2 (ENSNFUG00015004156)	ENSNFUG00015004141	ENSNFUG00015004135	pmt (ENSNFUG00015004106)	ENSNFUG00015004090	ENSNFUG00015004088 ##22	ENSNFUG00015004087	MID2 (ENSNFUG00015004039)	ENSNFUG00015004018	ENSNFUG00015004013	ENSNFUG00015004009	TSC22D3 (ENSNFUG00015004007)	ENSNFUG00015004003	PCDH11X (ENSNFUG00015003999)	ENSNFUG00015003997	KLHL4 (ENSNFUG00015003984)	ENSNFUG00015003973	eef1g (ENSNFUG00015003934)	POLR2GL (ENSNFUG00015003921)	BX470131.2 (ENSNFUG00015003918)	ENSNFUG00015003886
Turquoise killifish	MODERN SPECIES	1618	PTP4A2 (ENSNFUG00015006124)	ENSNFUG00015006150	ENSNFUG00015006155	ENSNFUG00015006159	ENSNFUG00015006163	ENSNFUG00015006169	ENSNFUG00015006173	ENSNFUG00015006178	ENSNFUG00015006185	ADGRB2 (ENSNFUG00015006220)	ENSNFUG00015006333	COL9A2 (ENSNFUG00015006337)	ENSNFUG00015006358	angpt2b (ENSNFUG00015006366)	ENSNFUG00015006387	ENSNFUG00015006388 ##22	ENSNFUG00015006444	ENSNFUG00015006582	ENSNFUG00015006588	trim55a (ENSNFUG00015006590)	ENSNFUG00015006594	ENSNFUG00015006596	SLC4A2 (ENSNFUG00015006709)	TTC19 (ENSNFUG00015008558)	ENSNFUG00015008576	tmub1 (ENSNFUG00015008586)	ubtfl (ENSNFUG00015008607)	FASTK (ENSNFUG00015008645) ##30	afg3l2 (ENSNFUG00015008665)	ENSNFUG00015008859	bfsp2 (ENSNFUG00015009054)
Turquoise killifish	MODERN SPECIES	1614	TMEM145 (ENSNFUG00015003314)	ENSNFUG00015003279	ENSNFUG00015003265	cd79a (ENSNFUG00015003253)	arhgef1b (ENSNFUG00015003247)	ENSNFUG00015003239	ENSNFUG00015003234	MEGF8 (ENSNFUG00015003219)	ENSNFUG00015003203	TRIM35-28 (ENSNFUG00015003193)	CXCR3 (ENSNFUG00015003187)	Nfu_g_1_001121 (ENSNFUG00015003185)	CXCR3.2 (ENSNFUG00015003180)	cnfn (ENSNFUG00015003173)	tlr21 (ENSNFUG00015003168)	PAFAH1B3 (ENSNFUG00015003157) ##22	ENSNFUG00015003147	ENSNFUG00015003140	ENSNFUG00015003130	ENSNFUG00015003117	ENSNFUG00015003110	ENSNFUG00015003103	ENSNFUG00015003097	GRIK5 (ENSNFUG00015002902)	znf574 (ENSNFUG00015002814)	GSK3AB (ENSNFUG00015002760)	ZNF526 (ENSNFUG00015002749)	ENSNFUG00015002724	ENSNFUG00015002709	POU2F2 (ENSNFUG00015002703)	DEDD2 (ENSNFUG00015002697)
Oryzias	ANCESTRAL SPECIES	2	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a	ENSGT00940000165134.a.b
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT01050000244883.B.d	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00940000164807.G.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.H.c.a.a.f.b	ENSGT01100000263479.H.c.b	ENSGT01030000234778.d	ENSGT01100000263479.H.c.a.a.f.a	ENSGT01030000234778.c	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000161799	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a
Indian medaka	MODERN SPECIES	5	ENSOMEG00000016965	ENSOMEG00000016926	TMEM145 (ENSOMEG00000016909)	ENSOMEG00000016856	cd79a (ENSOMEG00000016786)	arhgef1b (ENSOMEG00000016744)	ENSOMEG00000016440	ENSOMEG00000016396	MEGF8 (ENSOMEG00000016371)	trim35-28 (ENSOMEG00000000405)	CXCR3 (ENSOMEG00000016282)	ENSOMEG00000016269	cnfn (ENSOMEG00000016247)	cxcr3.2 (ENSOMEG00000016226)	tlr21 (ENSOMEG00000016214)	pafah1b3 (ENSOMEG00000016190) ##22	ENSOMEG00000016141	ENSOMEG00000016072	ENSOMEG00000016037	ENSOMEG00000015985	ENSOMEG00000015920	ENSOMEG00000015887	ENSOMEG00000015847	ENSOMEG00000015837	ENSOMEG00000015827	GRIK5 (ENSOMEG00000015786)	znf574 (ENSOMEG00000015669)	gsk3ab (ENSOMEG00000000943)	ZNF574 (ENSOMEG00000015611)	ENSOMEG00000015577	ERF (ENSOMEG00000015517)
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000020962	mrpl17 (ENSOJAG00000020953)	TMEM145 (ENSOJAG00000020737)	ENSOJAG00000020630	cd79a (ENSOJAG00000020619)	arhgef1b (ENSOJAG00000020590)	ENSOJAG00000020577	ENSOJAG00000020567	MEGF8 (ENSOJAG00000020538)	trim35-28 (ENSOJAG00000020531)	CXCR3 (ENSOJAG00000020528)	cxcr3.3 (ENSOJAG00000020524)	cxcr3.2 (ENSOJAG00000020523)	cnfn (ENSOJAG00000020519)	tlr21 (ENSOJAG00000020516)	pafah1b3 (ENSOJAG00000020513) ##22	ENSOJAG00000020380	ENSOJAG00000020348	ENSOJAG00000020323	ENSOJAG00000020311	ENSOJAG00000020294	GRIK5 (ENSOJAG00000019687)	znf574 (ENSOJAG00000019528)	gsk3ab (ENSOJAG00000019454)	ZNF574 (ENSOJAG00000019446)	ENSOJAG00000019275	ERF (ENSOJAG00000019256)	POU2F2 (ENSOJAG00000019247)	dedd1 (ENSOJAG00000019215)	rabac1 (ENSOJAG00000019200)	ENSOJAG00000019188
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.g	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778.f	ENSGT01030000234778.e.a	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000013545	cd79a (ENSORLG00000026911)	arhgef1b (ENSORLG00000022529)	ENSORLG00000013535	ENSORLG00000023133	MEGF8 (ENSORLG00000013530)	trim35-28 (ENSORLG00000013506)	ENSORLG00000023772	ENSORLG00000013468	ENSORLG00000013488	cxcr3.3 (ENSORLG00000022397)	cxcr3.2 (ENSORLG00000013459)	ENSORLG00000013448	tlr21 (ENSORLG00000013437)	ENSORLG00000024080	pafah1b3 (ENSORLG00000028084) ##22	ENSORLG00000013389	ENSORLG00000023372	ENSORLG00000024791	ENSORLG00000027323	ENSORLG00000024119	GRIK5 (ENSORLG00000013374)	znf574 (ENSORLG00000013344)	gsk3ab (ENSORLG00000013330)	ENSORLG00000030079	ZNF574 (ENSORLG00000013290)	ENSORLG00000013259	ERF (ENSORLG00000023273)	POU2F2 (ENSORLG00000013228)	dedd1 (ENSORLG00000026809)	dedd1 (ENSORLG00000013218)
Chinese medaka	DUPLICATION
Chinese medaka	MODERN SPECIES	1461																ENSOSIG00000011716 ##22
Chinese medaka	MODERN SPECIES	1001	mrpl17 (ENSOSIG00000011807)	TMEM145 (ENSOSIG00000011503)	ENSOSIG00000011494	cd79a (ENSOSIG00000011492)	ENSOSIG00000011491	ENSOSIG00000011489	ENSOSIG00000011488	ENSOSIG00000011487	MEGF8 (ENSOSIG00000011485)	trim35-28 (ENSOSIG00000011484)	CXCR3 (ENSOSIG00000011483)	cxcr3.3 (ENSOSIG00000011482)	cxcr3.2 (ENSOSIG00000011481)	cnfn (ENSOSIG00000011479)	tlr21 (ENSOSIG00000011478)	PAFAH1B3 (ENSOSIG00000011477) ##22	ENSOSIG00000011476
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.E	ENSGT00940000177666	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a	ENSGT00940000165134.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.k.b	ENSGT01050000244848.B.a.b.e.f	ENSGT01050000244848.B.a.b.f.k.a	ENSGT01050000244848.B.a.b.f.l	ENSGT01050000244848.B.a.b.e.e.b	ENSGT01050000244848.B.a.b.e.e.a	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.b	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.a	ENSGT01100000263479.H.c.b	ENSGT01030000234778.a.a.a.a	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.k.b	ENSGT01050000244848.B.a.b.f.k.a	ENSGT01050000244848.B.a.b.f.l	ENSGT01050000244848.B.a.b.e.f	ENSGT01050000244848.B.a.b.e.e.b	ENSGT01050000244848.B.a.b.e.e.a	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.b	ENSGT01100000263479.H.c.a.a.e.b	ENSGT01100000263479.H.c.b	ENSGT01030000234778.a.a.a.a	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.k.b	ENSGT01050000244848.B.a.b.f.k.a	ENSGT01050000244848.B.a.b.f.l	ENSGT01050000244848.B.a.b.e.f	ENSGT01050000244848.B.a.b.e.e.b.b	ENSGT01050000244848.B.a.b.e.e.a	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f.i	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.b	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a
Burton s mouthbrooder	MODERN SPECIES	1167									trim35-28 (ENSHBUG00000020818)	CXCR3 (ENSHBUG00000020870)	ENSHBUG00000020897	ENSHBUG00000020925	cxcr3.2 (ENSHBUG00000020936)	tlr21 (ENSHBUG00000020943)	ENSHBUG00000020959	pafah1b3 (ENSHBUG00000020994) ##22	ENSHBUG00000021029
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.k.b	ENSGT01050000244848.B.a.b.f.k.a	ENSGT01050000244848.B.a.b.f.l	ENSGT01050000244848.B.a.b.e.f	ENSGT01050000244848.B.a.b.e.e.b.b	ENSGT01050000244848.B.a.b.e.e.a	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f.i	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.b	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a
P. nyererei	MODERN SPECIES	362	ENSPNYG00000015260	cd79a (ENSPNYG00000015311)	arhgef1b (ENSPNYG00000015379)	ENSPNYG00000015421	ENSPNYG00000015431	MEGF8 (ENSPNYG00000015451)	trim35-28 (ENSPNYG00000015524)	CXCR3 (ENSPNYG00000015545)	CXCR3 (ENSPNYG00000015562)	cxcr3.3 (ENSPNYG00000015582)	ENSPNYG00000015592	cxcr3.2 (ENSPNYG00000015603)	cnfn (ENSPNYG00000015612)	tlr21 (ENSPNYG00000015627)	ENSPNYG00000015633	pafah1b3 (ENSPNYG00000015644) ##22	ENSPNYG00000015669	ENSPNYG00000015709
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f.k.b	ENSGT01050000244848.B.a.b.f.k.a	ENSGT01050000244848.B.a.b.f.l	ENSGT01050000244848.B.a.b.e.f	ENSGT01050000244848.B.a.b.e.e.b.a	ENSGT01050000244848.B.a.b.e.e.b.b	ENSGT01050000244848.B.a.b.e.e.a	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT00940000178748	ENSGT01100000263479.H.c.a.a.f.j.a.b.b.b.b	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005003290	ENSMZEG00005003272	MEGF8 (ENSMZEG00005003030)	trim35-28 (ENSMZEG00005002976)	ENSMZEG00005002965	ENSMZEG00005002950	ENSMZEG00005002938	cxcr3.3 (ENSMZEG00005002912)	cxcr3.3 (ENSMZEG00005002892)	cxcr3.3 (ENSMZEG00005002867)	cxcr3.3 (ENSMZEG00005002672)	cxcr3.2 (ENSMZEG00005002660)	cnfn (ENSMZEG00005002655)	tlr21 (ENSMZEG00005002209)	ENSMZEG00005002190	pafah1b3 (ENSMZEG00005002174) ##22	ENSMZEG00005002162	ENSMZEG00005002140	ENSMZEG00005001779	ENSMZEG00005000774	ENSMZEG00005000636	ENSMZEG00005000584	ENSMZEG00005000500	ENSMZEG00005000346	ENSMZEG00005000311	GRIK5 (ENSMZEG00005000191)	znf574 (ENSMZEG00005000114)	gsk3ab (ENSMZEG00005018449)	ZNF526 (ENSMZEG00005018444)	ENSMZEG00005018437	ENSMZEG00005018431
Eastern happy	MODERN SPECIES	2	arhgef1b (ENSACLG00000026546)	ENSACLG00000026532	ENSACLG00000026507	MEGF8 (ENSACLG00000026457)	trim35-28 (ENSACLG00000026445)	CXCR3 (ENSACLG00000026441)	CXCR3 (ENSACLG00000026426)	CXCR3 (ENSACLG00000026417)	cxcr3.3 (ENSACLG00000026410)	cxcr3.3 (ENSACLG00000026405)	ENSACLG00000026394	cxcr3.2 (ENSACLG00000026384)	cnfn (ENSACLG00000026377)	tlr21 (ENSACLG00000026373)	ENSACLG00000026366	pafah1b3 (ENSACLG00000026347) ##22	ENSACLG00000026333	ENSACLG00000026328	ENSACLG00000026285	ENSACLG00000026247	ENSACLG00000026217	GRIK5 (ENSACLG00000026152)	znf574 (ENSACLG00000026124)	ENSACLG00000026120	gsk3ab (ENSACLG00000026113)	ZNF526 (ENSACLG00000026103)	ENSACLG00000026077	ENSACLG00000026069	ENSACLG00000025997	dedd1 (ENSACLG00000025983)	rabac1 (ENSACLG00000025956)
Lyretail cichlid	MODERN SPECIES	506	mrpl17 (ENSNBRG00000015689)	TMEM145 (ENSNBRG00000015653)	ENSNBRG00000015634	ENSNBRG00000015598	cd79a (ENSNBRG00000015585)	ENSNBRG00000015568	ENSNBRG00000015548	MEGF8 (ENSNBRG00000015453)	ENSNBRG00000015419	CXCR3 (ENSNBRG00000015408)	cxcr3.3 (ENSNBRG00000015401)	CXCR3 (ENSNBRG00000015384)	cxcr3.2 (ENSNBRG00000015370)	cnfn (ENSNBRG00000015356)	ENSNBRG00000015316	pafah1b3 (ENSNBRG00000015299) ##22	ENSNBRG00000015285	ENSNBRG00000015266	ENSNBRG00000015235	ENSNBRG00000015206
Nile tilapia	MODERN SPECIES	2	ENSONIG00000031159	ENSONIG00000011429	cd79a (ENSONIG00000011435)	ENSONIG00000038892	ENSONIG00000031254	MEGF8 (ENSONIG00000011447)	MEGF8 (ENSONIG00000034671)	trim35-28 (ENSONIG00000011453)	CXCR3 (ENSONIG00000039022)	CXCR3 (ENSONIG00000011454)	ENSONIG00000032421	ENSONIG00000040912	cxcr3.3 (ENSONIG00000011457)	cxcr3.2 (ENSONIG00000011458)	cnfn (ENSONIG00000035573)	pafah1b3 (ENSONIG00000011461) ##22	ENSONIG00000011464	ENSONIG00000013126	ENSONIG00000013127	ENSONIG00000037954	ENSONIG00000013128	ENSONIG00000013122	ENSONIG00000027857	ENSONIG00000013123	ENSONIG00000042288	ENSONIG00000036740	ENSONIG00000037846	GRIK5 (ENSONIG00000013114)	znf574 (ENSONIG00000013113)	gsk3ab (ENSONIG00000039856)	ENSONIG00000013111
Midas cichlid	MODERN SPECIES	608								trim35-28 (ENSACIG00000014229)	ENSACIG00000014223	CXCR3 (ENSACIG00000014209)	ENSACIG00000014198	cxcr3.3 (ENSACIG00000014175)	cxcr3.3 (ENSACIG00000014141)	cxcr3.2 (ENSACIG00000014125)	cnfn (ENSACIG00000014108)	pafah1b3 (ENSACIG00000014054) ##22	ceacam1 (ENSACIG00000014015)	ENSACIG00000013983	ENSACIG00000013970	ENSACIG00000013954
Pomacentridae	ANCESTRAL SPECIES	35	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT00940000177666	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553	ENSGT00390000008714.b
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT00940000177666	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553	ENSGT00390000008714.b
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT00950000182774.b.a.b.a.a	ENSGT01100000263491.a.b.a.a.a.a.b.r	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.E	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00940000179553	ENSGT00390000008714.b
Clown anemonefish	MODERN SPECIES	3484						ENSAOCG00000010627	ENSAOCG00000010609	MEGF8 (ENSAOCG00000010596)	trim35-28 (ENSAOCG00000010482)	CXCR3 (ENSAOCG00000010465)	cxcr3.3 (ENSAOCG00000010459)	cxcr3.2 (ENSAOCG00000010450)	cnfn (ENSAOCG00000010444)	tlr21 (ENSAOCG00000010425)	ENSAOCG00000010419	pafah1b3 (ENSAOCG00000010402) ##22	ENSAOCG00000010369	ENSAOCG00000010322	ENSAOCG00000002401	ENSAOCG00000010296
Orange clownfish	MODERN SPECIES	21	TMEM145 (ENSAPEG00000009308)	ENSAPEG00000009335	cd79a (ENSAPEG00000009398)	ENSAPEG00000009410	ENSAPEG00000009434	ENSAPEG00000009501	ENSAPEG00000009533	MEGF8 (ENSAPEG00000009579)	trim35-28 (ENSAPEG00000009729)	CXCR3 (ENSAPEG00000009736)	cxcr3.3 (ENSAPEG00000009742)	cxcr3.2 (ENSAPEG00000009750)	cnfn (ENSAPEG00000009758)	tlr21 (ENSAPEG00000009767)	ENSAPEG00000009773	pafah1b3 (ENSAPEG00000009798) ##22	ENSAPEG00000009842	ENSAPEG00000009905	ENSAPEG00000009916	ENSAPEG00000009941	GRIK5 (ENSAPEG00000009966)	znf574 (ENSAPEG00000010055)	gsk3ab (ENSAPEG00000010112)	ENSAPEG00000010134	ENSAPEG00000010144	ENSAPEG00000010171	ENSAPEG00000010268	POU2F2 (ENSAPEG00000010280)	dedd1 (ENSAPEG00000010321)	rabac1 (ENSAPEG00000010344)	ENSAPEG00000010390
Spiny chromis	MODERN SPECIES	695											CXCR3 (ENSAPOG00000024024)	cxcr3.3 (ENSAPOG00000023968)	cxcr3.2 (ENSAPOG00000023952)	cnfn (ENSAPOG00000023936)	tlr21 (ENSAPOG00000023924)	pafah1b3 (ENSAPOG00000023903) ##22	ENSAPOG00000023856	ENSAPOG00000023813	ENSAPOG00000023681	ENSAPOG00000023657	GRIK5 (ENSAPOG00000023635)
Bicolor damselfish	MODERN SPECIES	888		TMEM145 (ENSSPAG00000004078)	ENSSPAG00000004129	cd79a (ENSSPAG00000004172)	arhgef1b (ENSSPAG00000004198)	ENSSPAG00000004341	ENSSPAG00000004352	MEGF8 (ENSSPAG00000004366)	trim35-28 (ENSSPAG00000004469)	CXCR3 (ENSSPAG00000004489)	cxcr3.3 (ENSSPAG00000004497)	cxcr3.2 (ENSSPAG00000004502)	cnfn (ENSSPAG00000004505)	tlr21 (ENSSPAG00000004513)	ENSSPAG00000004517	pafah1b3 (ENSSPAG00000004529) ##22	ENSSPAG00000004562	ENSSPAG00000004588	ENSSPAG00000004621	ENSSPAG00000004633
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01100000263479.H.d	ENSGT01100000263479.H.c.a.a.f	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Tetraodontidae	ANCESTRAL SPECIES	25	ENSGT00940000153981.B	ENSGT00990000204044	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT00940000164807.G.a.a.b	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.b	ENSGT01100000263479.H.d	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b.c	ENSGT00940000165364.a.a
Fugu	MODERN SPECIES	19	mrpl17 (ENSTRUG00000027723)	TMEM145 (ENSTRUG00000001417)	ENSTRUG00000026396	LIPE (ENSTRUG00000001464)	cd79a (ENSTRUG00000020369)	arhgef1b (ENSTRUG00000026663)	ENSTRUG00000024470	ENSTRUG00000031574	ENSTRUG00000027387	trim35-28 (ENSTRUG00000001917)	CXCR3 (ENSTRUG00000031111)	cxcr3.3 (ENSTRUG00000027195)	cxcr3.2 (ENSTRUG00000003961)	tlr21 (ENSTRUG00000004103)	ENSTRUG00000021730	pafah1b3 (ENSTRUG00000023793) ##22	ENSTRUG00000029123	ENSTRUG00000004675	ENSTRUG00000004930	GRIK5 (ENSTRUG00000005275)	znf574 (ENSTRUG00000006262)	gsk3ab (ENSTRUG00000006315)	ENSTRUG00000030165	ENSTRUG00000006695	ENSTRUG00000007193	ERF (ENSTRUG00000022541)	POU2F2 (ENSTRUG00000007484)	dedd1 (ENSTRUG00000007969)	rabac1 (ENSTRUG00000008124)	ENSTRUG00000008243	ENSTRUG00000029247
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Ballan wrasse	MODERN SPECIES	766										ENSLBEG00000021559	CXCR3 (ENSLBEG00000021579)	cxcr3.3 (ENSLBEG00000021591)	cxcr3.2 (ENSLBEG00000021606)	cnfn (ENSLBEG00000021627)	tlr21 (ENSLBEG00000021653)	pafah1b3 (ENSLBEG00000021677) ##22	ENSLBEG00000021716	ENSLBEG00000021754
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00990000213343	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00990000213343	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b
European seabass	MODERN SPECIES	6	cblc (ENSDLAG00005000493)	ENSDLAG00005000517	ENSDLAG00005013031	mrpl17 (ENSDLAG00005000534)	ENSDLAG00005000550	ENSDLAG00005000567	cd79a (ENSDLAG00005000617)	arhgef1b (ENSDLAG00005000640)	ENSDLAG00005000744	ENSDLAG00005000794	ENSDLAG00005000756	ENSDLAG00005032808	cxcr3.3 (ENSDLAG00005033844)	cxcr3.2 (ENSDLAG00005027937)	tlr21 (ENSDLAG00005000820)	pafah1b3 (ENSDLAG00005000824) ##22	ENSDLAG00005013446	ENSDLAG00005000831	ENSDLAG00005000848	ENSDLAG00005034004	ENSDLAG00005000902	ENSDLAG00005000978	znf574 (ENSDLAG00005000982)	gsk3ab (ENSDLAG00005000993)	ENSDLAG00005001017	ENSDLAG00005001022	ENSDLAG00005035075	ENSDLAG00005001087	ENSDLAG00005001094	dedd1 (ENSDLAG00005001141)	rabac1 (ENSDLAG00005001150)
Large yellow croaker	MODERN SPECIES	484	TMEM145 (ENSLCRG00005011594)	ENSLCRG00005011591	ENSLCRG00005011580	cd79a (ENSLCRG00005011567)	arhgef1b (ENSLCRG00005011087)	ENSLCRG00005011072	ENSLCRG00005011069	MEGF8 (ENSLCRG00005010786)	trim35-28 (ENSLCRG00005010780)	CXCR3 (ENSLCRG00005010779)	cxcr3.3 (ENSLCRG00005010778)	cxcr3.2 (ENSLCRG00005010777)	cnfn (ENSLCRG00005010776)	tlr21 (ENSLCRG00005010775)	ENSLCRG00005010774	pafah1b3 (ENSLCRG00005010773) ##22	ENSLCRG00005010772	ENSLCRG00005010770	ENSLCRG00005010766	ENSLCRG00005010765	ENSLCRG00005010763	ENSLCRG00005010762	cyb5r4 (ENSLCRG00005010752)	sim1a (ENSLCRG00005010749)	ASCC3 (ENSLCRG00005010678)	ENSLCRG00005010660	GRIK2 (ENSLCRG00005008744)	cuedc1b (ENSLCRG00005008725)	cndp1 (ENSLCRG00005007314)	ABHD5 (ENSLCRG00005007294)	ano10a (ENSLCRG00005006466)
Gilthead seabream	MODERN SPECIES	8	ENSSAUG00010016341	ENSSAUG00010015624	mrpl17 (ENSSAUG00010015613)	TMEM145 (ENSSAUG00010015609)	ENSSAUG00010015595	cd79a (ENSSAUG00010015591)	arhgef1b (ENSSAUG00010015202)	ENSSAUG00010015193	ENSSAUG00010015191	trim35-28 (ENSSAUG00010015187)	CXCR3 (ENSSAUG00010015186)	cxcr3.3 (ENSSAUG00010015184)	cxcr3.2 (ENSSAUG00010015183)	cnfn (ENSSAUG00010015182)	tlr21 (ENSSAUG00010015180)	pafah1b3 (ENSSAUG00010015175) ##22	ENSSAUG00010015174	ENSSAUG00010015169	ENSSAUG00010015166	ENSSAUG00010015162	ENSSAUG00010015158	ENSSAUG00010015155	ENSSAUG00010015152	ENSSAUG00010015146	ENSSAUG00010015140	ENSSAUG00010015131	ENSSAUG00010015129	GRIK5 (ENSSAUG00010015085)	ENSSAUG00010015064	znf574 (ENSSAUG00010015061)	gsk3ab (ENSSAUG00010014980)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b.t	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Pike perch	MODERN SPECIES	116	mrpl17 (ENSSLUG00000020855)	TMEM145 (ENSSLUG00000020712)	ENSSLUG00000020697	LIPE (ENSSLUG00000020646)	cd79a (ENSSLUG00000020633)	arhgef1b (ENSSLUG00000020588)	ENSSLUG00000020552	ENSSLUG00000020547	MEGF8 (ENSSLUG00000020432)	trim35-28 (ENSSLUG00000020416)	CXCR3 (ENSSLUG00000020411)	cxcr3.3 (ENSSLUG00000020406)	cxcr3.2 (ENSSLUG00000020400)	cnfn (ENSSLUG00000020393)	tlr21 (ENSSLUG00000020389)	pafah1b3 (ENSSLUG00000020384) ##22	ENSSLUG00000020372	ENSSLUG00000020364	ENSSLUG00000020350	ENSSLUG00000020343
Channel bull blenny	MODERN SPECIES	7	ENSCGOG00000010033	mrpl17 (ENSCGOG00000010007)	TMEM145 (ENSCGOG00000009919)	ENSCGOG00000009887	cd79a (ENSCGOG00000009882)	ENSCGOG00000009874	ENSCGOG00000009873	ENSCGOG00000009870	trim35-28 (ENSCGOG00000009747)	CXCR3 (ENSCGOG00000009741)	cxcr3.3 (ENSCGOG00000009732)	cxcr3.2 (ENSCGOG00000009727)	cnfn (ENSCGOG00000009707)	tlr21 (ENSCGOG00000009705)	ENSCGOG00000009701	pafah1b3 (ENSCGOG00000009682) ##22	ENSCGOG00000009669	ENSCGOG00000009665	ENSCGOG00000009658	ENSCGOG00000009627	ENSCGOG00000009622	ENSCGOG00000009619	grik5 (ENSCGOG00000008765)	znf574 (ENSCGOG00000008739)	gsk3ab (ENSCGOG00000007758)	ENSCGOG00000007734	ENSCGOG00000007663	ENSCGOG00000007650	POU2F2 (ENSCGOG00000007638)	dedd1 (ENSCGOG00000007634)	rabac1 (ENSCGOG00000007632)
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000157292.gc	ENSGT00940000164807.G.a.a.b	ENSGT00940000162179.e.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a.h	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000177056.a	ENSGT00940000165134.a.b
Lumpfish	MODERN SPECIES	7	ENSCLMG00005004441	ENSCLMG00005004394	mrpl17 (ENSCLMG00005004367)	TMEM145 (ENSCLMG00005014265)	ENSCLMG00005014263	cd79a (ENSCLMG00005014261)	arhgef1b (ENSCLMG00005014213)	ENSCLMG00005014193	ENSCLMG00005014188	trim35-28 (ENSCLMG00005014182)	CXCR3 (ENSCLMG00005014181)	cxcr3.3 (ENSCLMG00005014180)	cxcr3.2 (ENSCLMG00005014178)	cnfn (ENSCLMG00005014177)	tlr21 (ENSCLMG00005014176)	pafah1b3 (ENSCLMG00005014175) ##22	ENSCLMG00005014171	ENSCLMG00005014169	ENSCLMG00005014167	ENSCLMG00005014164	ENSCLMG00005014161	ENSCLMG00005014160	GRIK5 (ENSCLMG00005014159)	znf574 (ENSCLMG00005014158)	gsk3ab (ENSCLMG00005013919)	ZNF526 (ENSCLMG00005013913)	ENSCLMG00005013884	ENSCLMG00005013881	POU2F2 (ENSCLMG00005013873)	dedd1 (ENSCLMG00005013872)	rabac1 (ENSCLMG00005013871)
Stickleback	MODERN SPECIES	19	ENSGACG00000009175	PTPN3 (ENSGACG00000009182)	ENSGACG00000009205	ENSGACG00000009206	ENSGACG00000009216	MSH5 (ENSGACG00000009217)	FAM171A1 (ENSGACG00000009230)	nmt2 (ENSGACG00000009238)	rpp38 (ENSGACG00000009258)	crot (ENSGACG00000009260)	crot (ENSGACG00000009281)	abcb4 (ENSGACG00000009299)	rundc3b (ENSGACG00000009330)	cnfn (ENSGACG00000009361)	tlr21 (ENSGACG00000009364)	pafah1b3 (ENSGACG00000009368) ##22	ENSGACG00000009407	ENSGACG00000009412	ENSGACG00000009423	ENSGACG00000009425	GRIK5 (ENSGACG00000009427)	znf574 (ENSGACG00000009439)	gsk3ab (ENSGACG00000009447)	ZNF526 (ENSGACG00000009449)	ENSGACG00000009451	ENSGACG00000009452	ERF (ENSGACG00000009467)	ENSGACG00000009471	dedd1 (ENSGACG00000009481)	rabac1 (ENSGACG00000009485)	ENSGACG00000009520
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Anabantaria	ANCESTRAL SPECIES	2	ENSGT01050000244883.B.c.a	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a	ENSGT00990000203786
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT01050000244883.B.c.a	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.E	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a	ENSGT00990000203786	ENSGT00940000160908
Climbing perch	MODERN SPECIES	7	ENSATEG00000011682	mrpl17 (ENSATEG00000018777)	ENSATEG00000018807	ENSATEG00000018849	cd79a (ENSATEG00000018881)	arhgef1b (ENSATEG00000018901)	ENSATEG00000018964	ENSATEG00000018979	ENSATEG00000018991	ENSATEG00000029031	ENSATEG00000019129	cxcr3.3 (ENSATEG00000028818)	cxcr3.2 (ENSATEG00000019139)	cnfn (ENSATEG00000019143)	tlr21 (ENSATEG00000019150)	pafah1b3 (ENSATEG00000026654) ##22	ENSATEG00000019173	ENSATEG00000029413	ENSATEG00000019244	ENSATEG00000019579	znf574 (ENSATEG00000019636)	gsk3ab (ENSATEG00000019676)	ZNF526 (ENSATEG00000019718)	ENSATEG00000019726	ENSATEG00000019806	ENSATEG00000019821	dedd1 (ENSATEG00000019888)	rabac1 (ENSATEG00000019902)	ENSATEG00000019917	ENSATEG00000020020	ENSATEG00000020055
Siamese fighting fish	MODERN SPECIES	7	ENSBSLG00000024339	mrpl17 (ENSBSLG00000024340)	TMEM145 (ENSBSLG00000024343)	ENSBSLG00000024422	cd79a (ENSBSLG00000003673)	arhgef1b (ENSBSLG00000003874)	ENSBSLG00000004150	ENSBSLG00000004157	MEGF8 (ENSBSLG00000004187)	trim35-28 (ENSBSLG00000004289)	CXCR3 (ENSBSLG00000004305)	cxcr3.3 (ENSBSLG00000004309)	cxcr3.2 (ENSBSLG00000004311)	cnfn (ENSBSLG00000004313)	tlr21 (ENSBSLG00000004315)	pafah1b3 (ENSBSLG00000004785) ##22	ENSBSLG00000004870	ENSBSLG00000004916	ENSBSLG00000004977	ENSBSLG00000005054	ENSBSLG00000005099	ENSBSLG00000005477	ENSBSLG00000005532	ENSBSLG00000005562	GRIK5 (ENSBSLG00000005670)	znf574 (ENSBSLG00000006312)	gsk3ab (ENSBSLG00000006727)	ENSBSLG00000007248	ENSBSLG00000007263	ERF (ENSBSLG00000007352)	POU2F2 (ENSBSLG00000007368)
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000005254	mrpl17 (ENSMAMG00000025813)	ENSMAMG00000005202	ENSMAMG00000005171	cd79a (ENSMAMG00000005168)	arhgef1b (ENSMAMG00000005107)	ENSMAMG00000005078	ENSMAMG00000005072	ENSMAMG00000004994	ENSMAMG00000004985	ENSMAMG00000004978	cxcr3.3 (ENSMAMG00000004967)	cxcr3.2 (ENSMAMG00000004964)	cnfn (ENSMAMG00000004938)	tlr21 (ENSMAMG00000004934)	pafah1b3 (ENSMAMG00000004876) ##22	ENSMAMG00000004846	ENSMAMG00000004832	ENSMAMG00000004816	ENSMAMG00000004762	znf574 (ENSMAMG00000004742)	gsk3ab (ENSMAMG00000004699)	ENSMAMG00000004684	ENSMAMG00000004571	ENSMAMG00000004553	ENSMAMG00000004493	ENSMAMG00000004475	dedd1 (ENSMAMG00000004448)	rabac1 (ENSMAMG00000004422)	ENSMAMG00000004305	ENSMAMG00000004282
Carangaria	ANCESTRAL SPECIES	1	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.d	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b	ENSGT01100000263479.H.d	ENSGT01100000263479.H.c.a.a.e.a	ENSGT01100000263479.H.c.b	ENSGT01030000234778	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549
Seriola	ANCESTRAL SPECIES	117	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.b
Greater amberjack	MODERN SPECIES	161	mrpl17 (ENSSDUG00000001234)	TMEM145 (ENSSDUG00000001222)	ENSSDUG00000001204	ENSSDUG00000001176	cd79a (ENSSDUG00000001157)	arhgef1b (ENSSDUG00000001071)	ENSSDUG00000001044	ENSSDUG00000001005	MEGF8 (ENSSDUG00000000863)	trim35-28 (ENSSDUG00000000845)	CXCR3 (ENSSDUG00000000833)	cxcr3.3 (ENSSDUG00000000827)	cxcr3.2 (ENSSDUG00000000819)	cnfn (ENSSDUG00000000811)	ENSSDUG00000000735	pafah1b3 (ENSSDUG00000000697) ##22	ENSSDUG00000000656	ENSSDUG00000000631	ENSSDUG00000000612	ENSSDUG00000000597	ENSSDUG00000000568	ENSSDUG00000000545	ENSSDUG00000000503
Yellowtail amberjack	MODERN SPECIES	2816	TMEM145 (ENSSLDG00000000603)	ENSSLDG00000000671	cd79a (ENSSLDG00000000721)	ENSSLDG00000000784	ENSSLDG00000000832	ENSSLDG00000000844	ENSSLDG00000000859	MEGF8 (ENSSLDG00000000951)	trim35-28 (ENSSLDG00000001136)	CXCR3 (ENSSLDG00000001202)	cxcr3.3 (ENSSLDG00000001208)	cxcr3.2 (ENSSLDG00000001223)	cnfn (ENSSLDG00000001234)	tlr21 (ENSSLDG00000001253)	ENSSLDG00000001258	pafah1b3 (ENSSLDG00000001265) ##22	ENSSLDG00000001280	ENSSLDG00000001290	ENSSLDG00000001338	ENSSLDG00000001377	ENSSLDG00000001444
Barramundi perch	MODERN SPECIES	161	ENSLCAG00010000095	mrpl17 (ENSLCAG00010000096)	TMEM145 (ENSLCAG00010000097)	ENSLCAG00010000098	cd79a (ENSLCAG00010000099)	arhgef1b (ENSLCAG00010000100)	ENSLCAG00010000101	ENSLCAG00010000102	MEGF8 (ENSLCAG00010000103)	trim35-28 (ENSLCAG00010000104)	CXCR3 (ENSLCAG00010000105)	cxcr3.3 (ENSLCAG00010000106)	cxcr3.2 (ENSLCAG00010000107)	cnfn (ENSLCAG00010000108)	tlr21 (ENSLCAG00010000109)	pafah1b3 (ENSLCAG00010000110) ##22	ENSLCAG00010000111	ENSLCAG00010000113	ENSLCAG00010000114	ENSLCAG00010000115	ENSLCAG00010000116	ENSLCAG00010000117	ENSLCAG00010000118	ENSLCAG00010000119	ENSLCAG00010000120	GRIK5 (ENSLCAG00010000122)	znf574 (ENSLCAG00010000123)	gsk3ab (ENSLCAG00010000124)	ENSLCAG00010000125	ENSLCAG00010000126	ENSLCAG00010000127
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT00940000164807.G.a.a.b	ENSGT00950000182774.b.a.b.a.a	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.f	ENSGT01050000244848.B.a.b.e	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H.c.a.a.f	ENSGT01100000263479.H.c.a.a.e.a	ENSGT00940000158852.e.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000162624	ENSGT00940000177554	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.a.b	ENSGT00940000165364.a.a.m.a
Tongue sole	MODERN SPECIES	4	mbpb (ENSCSEG00000011627)	TMEM145 (ENSCSEG00000011635)	ENSCSEG00000011642	cd79a (ENSCSEG00000011649)	ENSCSEG00000011656	ENSCSEG00000011664	ENSCSEG00000011682	ENSCSEG00000011688	ENSCSEG00000011696	MEGF8 (ENSCSEG00000011714)	ENSCSEG00000011780	CXCR3 (ENSCSEG00000011788)	cxcr3.3 (ENSCSEG00000011791)	cxcr3.2 (ENSCSEG00000011801)	cnfn (ENSCSEG00000011804)	pafah1b3 (ENSCSEG00000011811) ##22	bola1 (ENSCSEG00000011813)	SV2A (ENSCSEG00000011818)	ENSCSEG00000011831	mtmr11 (ENSCSEG00000011837)	otud7b (ENSCSEG00000011851)	rbm8a (ENSCSEG00000011865)	ENSCSEG00000011878	ENSCSEG00000011891	nr2f5 (ENSCSEG00000011922)	ENSCSEG00000011928	rpz (ENSCSEG00000011938)	rpz6 (ENSCSEG00000011944)	rpz5 (ENSCSEG00000011948)	rpz4 (ENSCSEG00000011950)	tmem176l.4 (ENSCSEG00000011957)
Turbot	MODERN SPECIES		ENSSMAG00000006691	mrpl17 (ENSSMAG00000006719)	ENSSMAG00000006746	ENSSMAG00000006840	cd79a (ENSSMAG00000008393)	arhgef1b (ENSSMAG00000008420)	ENSSMAG00000008460	ENSSMAG00000036897	ENSSMAG00000008527	ENSSMAG00000008604	ENSSMAG00000027561	cxcr3.3 (ENSSMAG00000008640)	cxcr3.2 (ENSSMAG00000030929)	cnfn (ENSSMAG00000030112)	tlr21 (ENSSMAG00000008689)	pafah1b3 (ENSSMAG00000008691) ##22	ENSSMAG00000008719	ENSSMAG00000008754	ENSSMAG00000008795	grik5 (ENSSMAG00000008882)	znf574 (ENSSMAG00000008952)	gsk3ab (ENSSMAG00000008999)	ENSSMAG00000009020	ENSSMAG00000009033	ENSSMAG00000009119	ENSSMAG00000009157	dedd1 (ENSSMAG00000009255)	rabac1 (ENSSMAG00000009295)	ENSSMAG00000009326	ENSSMAG00000009455	ENSSMAG00000009488
Otomorpha	ANCESTRAL SPECIES	14													ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.F	ENSGT01100000263479.B	ENSGT00940000161202	ENSGT00940000163576	ENSGT01030000234778	ENSGT00940000158852.g.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.gc	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a
Clupeiformes	ANCESTRAL SPECIES	50	ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180.s	ENSGT00940000161180.t	ENSGT00940000157292.gc	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.E	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.G	ENSGT01100000263479.F
Atlantic herring	MODERN SPECIES	2	ENSCHAG00000004486	mrpl17 (ENSCHAG00000004463)	TMEM145 (ENSCHAG00000003842)	ENSCHAG00000003726	cd79a (ENSCHAG00000003712)	arhgef1b (ENSCHAG00000002148)	ENSCHAG00000002095	ENSCHAG00000002071	MEGF8 (ENSCHAG00000001125)	ENSCHAG00000015393	cxcr3.1 (ENSCHAG00000015382)	cxcr3.3 (ENSCHAG00000015375)	cxcr3.2 (ENSCHAG00000015371)	cnfn (ENSCHAG00000015351)	tlr21 (ENSCHAG00000015340)	pafah1b3 (ENSCHAG00000015317) ##22	ENSCHAG00000015220	ENSCHAG00000015162	ENSCHAG00000015130	ENSCHAG00000015115	ENSCHAG00000015089	ENSCHAG00000014939	ENSCHAG00000014890	ENSCHAG00000014839	glipr2l (ENSCHAG00000014827)	ENSCHAG00000014819	ENSCHAG00000014803 ##30	ENSCHAG00000014756	ENSCHAG00000014736	ENSCHAG00000014715	ENSCHAG00000014671
Denticle herring	MODERN SPECIES	15	ENSDCDG00000004938	ENSDCDG00000004937	ENSDCDG00000004932	ENSDCDG00000004930	ENSDCDG00000004927	has1 (ENSDCDG00000004906)	ENSDCDG00000004898	KCNN4 (ENSDCDG00000004889)	ENSDCDG00000004879	trim35-28 (ENSDCDG00000004877)	cxcr3.1 (ENSDCDG00000004872)	cxcr3.3 (ENSDCDG00000004870)	cxcr3.2 (ENSDCDG00000004865)	cnfn (ENSDCDG00000004863)	tlr21 (ENSDCDG00000004860)	pafah1b3 (ENSDCDG00000004851) ##22	si:ch211-251f6.6 (ENSDCDG00000004837)	ENSDCDG00000004829	ENSDCDG00000004820	grik5 (ENSDCDG00000004184)	znf574 (ENSDCDG00000004120)	GSK3A (ENSDCDG00000004115)	ENSDCDG00000004112	ZNF526 (ENSDCDG00000004108)	ENSDCDG00000004103	ENSDCDG00000004099	POU2F2 (ENSDCDG00000004084)	ENSDCDG00000004077	dedd1 (ENSDCDG00000004072)	rabac1 (ENSDCDG00000004070)	ENSDCDG00000003443
Otophysi	ANCESTRAL SPECIES	1	ENSGT01030000234564.b	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00390000017343	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164	ENSGT00940000156036	ENSGT00510000054197	ENSGT00390000001745.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000181905	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.F	ENSGT01030000234778	ENSGT00940000158852.g.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b.a.a	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.b	ENSGT00940000165364.a.a
Characiphysae	ANCESTRAL SPECIES		ENSGT01030000234564.b	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00390000017343	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164	ENSGT00940000156036	ENSGT00510000054197	ENSGT00390000001745.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000181905	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.F	ENSGT00940000158852.g.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b.a.a	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.b	ENSGT00940000165364.a.a	ENSGT01030000234988
Channel catfish	MODERN SPECIES		LPCAT3 (ENSIPUG00000006923)	clstn3 (ENSIPUG00000006856)	pex5 (ENSIPUG00000006679)	cdca3 (ENSIPUG00000006662)	gnb3a (ENSIPUG00000006616)	p3h3 (ENSIPUG00000006593)	usp5 (ENSIPUG00000006508)	cd4-2.2 (ENSIPUG00000006445)	cd4-1 (ENSIPUG00000006367)	cxcr3 (ENSIPUG00000006358)	cxcr3.3 (ENSIPUG00000006350)	cxcr3.2 (ENSIPUG00000006343)	cnfn (ENSIPUG00000006326)	tlr21 (ENSIPUG00000006307)	ENSIPUG00000006280	pafah1b3 (ENSIPUG00000006258) ##22	ENSIPUG00000006224	ENSIPUG00000006209	ENSIPUG00000006131	ENSIPUG00000006106	grik5 (ENSIPUG00000006049)	znf574 (ENSIPUG00000006000)	Gsk3b (ENSIPUG00000005965)	ENSIPUG00000005951	znf574 (ENSIPUG00000005944)	cic (ENSIPUG00000005917)	erf (ENSIPUG00000005898)	pou2f2a (ENSIPUG00000005790)	ENSIPUG00000005772	dedd2 (ENSIPUG00000005741)	rabac1 (ENSIPUG00000005728)
Characiphysae_b	ANCESTRAL SPECIES	15	ENSGT00390000013354.b.a	ENSGT01030000234564.b	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00390000017343	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164	ENSGT00940000156036	ENSGT00510000054197	ENSGT00390000001745.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00940000167162	ENSGT00940000158852.g.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b.a.a	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.gc	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.b	ENSGT00940000165364.a.a	ENSGT01030000234988
Electric eel	MODERN SPECIES	334													cxcr3.2 (ENSEEEG00000003832)	cnfn (ENSEEEG00000003831)	tlr21 (ENSEEEG00000003829)	pafah1b3 (ENSEEEG00000003827) ##22	ceacam1 (ENSEEEG00000003822)	grik5 (ENSEEEG00000003809)	znf574 (ENSEEEG00000003806)	gsk3ab (ENSEEEG00000003793)	ENSEEEG00000003790	ZNF526 (ENSEEEG00000003789)	ENSEEEG00000003788	ENSEEEG00000003786	ENSEEEG00000003784	dedd1 (ENSEEEG00000003782)	dedd1 (ENSEEEG00000003780)	rabac1 (ENSEEEG00000003779)	atp1a3b (ENSEEEG00000003598)	ENSEEEG00000003579	g6fl (ENSEEEG00000003569)
Characoidei	ANCESTRAL SPECIES	28	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00390000017343	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164	ENSGT00940000156036	ENSGT00940000168039	ENSGT00510000054197.b	ENSGT00510000054197.a	ENSGT00390000001745.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT00940000158852.g.a	ENSGT00520000055635.c.b.b.a.a	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.b	ENSGT00940000165364.a.a	ENSGT01030000234988	ENSGT00940000160908	ENSGT00940000157775	ENSGT00530000067342
Red-bellied piranha	MODERN SPECIES	116	CLSTN3 (ENSPNAG00000019765)	pex5 (ENSPNAG00000019927)	cdca3 (ENSPNAG00000019946)	gnb3a (ENSPNAG00000019994)	P3H3 (ENSPNAG00000020094)	usp5 (ENSPNAG00000020180)	ENSPNAG00000020199	ENSPNAG00000020220	cd4-1 (ENSPNAG00000020270)	cxcr3.1 (ENSPNAG00000020279)	cxcr3.1 (ENSPNAG00000006759)	cxcr3.3 (ENSPNAG00000020309)	cxcr3.2 (ENSPNAG00000020317)	cnfn (ENSPNAG00000020334)	tlr21 (ENSPNAG00000020342)	pafah1b3 (ENSPNAG00000020361) ##22	ENSPNAG00000020441	ENSPNAG00000020482	grik5 (ENSPNAG00000020554)	ZNF526 (ENSPNAG00000020571)	ENSPNAG00000020619	ENSPNAG00000020627	ERF (ENSPNAG00000020634)	ENSPNAG00000020662	dedd1 (ENSPNAG00000020678)	rabac1 (ENSPNAG00000020684)	atp1a3b (ENSPNAG00000020721)	ENSPNAG00000020759	g6fl (ENSPNAG00000020789)	abhd16a (ENSPNAG00000020811)	vars1 (ENSPNAG00000020962)
Mexicana tetra	MODERN SPECIES	2	lpcat3 (ENSAMXG00000031860)	CLSTN3 (ENSAMXG00000033884)	pex5 (ENSAMXG00000019098)	cdca3 (ENSAMXG00000019090)	gnb3a (ENSAMXG00000019064)	P3H3 (ENSAMXG00000019026)	ENSAMXG00000018983	ENSAMXG00000018958	ENSAMXG00000018954	cd4-1 (ENSAMXG00000018903)	cxcr3.1 (ENSAMXG00000029906)	cxcr3.3 (ENSAMXG00000018866)	cxcr3.2 (ENSAMXG00000035350)	cnfn (ENSAMXG00000034341)	tlr21 (ENSAMXG00000025136)	pafah1b3 (ENSAMXG00000037557) ##22	ENSAMXG00000018704	ENSAMXG00000033173	ENSAMXG00000043617	ENSAMXG00000030086	ENSAMXG00000018666	grik5 (ENSAMXG00000018469)	znf574 (ENSAMXG00000038917)	ENSAMXG00000018358	ENSAMXG00000018302	gsk3ab (ENSAMXG00000037552)	ERF (ENSAMXG00000033215)	ENSAMXG00000029528	ENSAMXG00000030978	dedd1 (ENSAMXG00000039651)	rabac1 (ENSAMXG00000041839)
Cyprinoidei	ANCESTRAL SPECIES	13	ENSGT01030000234564.b	ENSGT00950000183086.a.b	ENSGT00940000156605	ENSGT00390000017343	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164	ENSGT00940000156036	ENSGT00510000054197.c	ENSGT00390000001745.a	ENSGT01050000244848.B.a.b.e.i	ENSGT01050000244848.B.a.b.e.j	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000181905	ENSGT00950000183199.a.b ##22	ENSGT01060000253583	ENSGT00940000167162	ENSGT01030000234778	ENSGT00940000158852.g.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b.a.a	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.b	ENSGT00940000165364.a.a
Cyprininae	DUPLICATION
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	7	ENSGT00390000008006.i	ENSGT00390000013354.b.a.b	ENSGT01030000234564.b.a	ENSGT00950000183086.a.b.f	ENSGT00940000156605.u	ENSGT00390000017343.u.a	ENSGT00940000159164.b	ENSGT00940000156036.kb	ENSGT00510000054197.c.b	ENSGT00390000001745.a.c	ENSGT01050000244848.B.a.b.e.i.f	ENSGT01050000244848.B.a.b.e.j.a	ENSGT01050000244848.B.b.a	ENSGT00940000161202	ENSGT00940000163576.j.a	ENSGT00950000183199.a.b.g.a ##22	ENSGT00940000167162.a	ENSGT01100000263479.F.h	ENSGT01100000263479.F.g	ENSGT01030000234778	ENSGT00940000158852.g.a.a	ENSGT00940000166708.g	ENSGT00520000055635.c.b.b.a.a.a	ENSGT00940000162624.b	ENSGT00940000159960.d.h	ENSGT00940000157292.fc.b.b	ENSGT00940000160115.a.a.a	ENSGT00390000008714.b.l	ENSGT00390000010549.i	ENSGT00940000165134.b.a	ENSGT00940000165364.a.a.e
Goldfish	MODERN SPECIES	35	zgc:92606 (ENSCARG00000008882)	leng8 (ENSCARG00000008891)	tpi1b (ENSCARG00000008904)	lpcat3 (ENSCARG00000008947)	CLSTN3 (ENSCARG00000009631)	pex5 (ENSCARG00000010886)	cdca3 (ENSCARG00000010982)	usp5 (ENSCARG00000011002)	ENSCARG00000011118	cd4-1 (ENSCARG00000011130)	cxcr3.1 (ENSCARG00000011155)	cxcr3.3 (ENSCARG00000011159)	ENSCARG00000011160	cxcr3.2 (ENSCARG00000011164)	cnfn (ENSCARG00000011173)	PAFAH1B3 (ENSCARG00000011180) ##22	ceacam1 (ENSCARG00000011183)	ENSCARG00000011194	ENSCARG00000011217	ENSCARG00000011280	grik5 (ENSCARG00000011313)	znf574 (ENSCARG00000011434)	gsk3ab (ENSCARG00000011445)	ZNF526 (ENSCARG00000011498)	ENSCARG00000011510	ENSCARG00000011518	ENSCARG00000011539	dedd1 (ENSCARG00000011587)	rabac1 (ENSCARG00000011602)	atp1a3b (ENSCARG00000011651)	ENSCARG00000012575
Cyprininae_a	ANCESTRAL SPECIES	36	ENSGT00390000008006.i	ENSGT00390000013354.b.a.b	ENSGT01030000234564.b.a	ENSGT00950000183086.a.b.f	ENSGT00940000156605.u	ENSGT00390000017343.u.a	ENSGT00940000159164.b	ENSGT00940000156036.kb	ENSGT00510000054197.c.b	ENSGT00390000001745.a.c	ENSGT01050000244848.B.a.b.e.i.f	ENSGT01050000244848.B.a.b.e.j.a	ENSGT01050000244848.B.b.a	ENSGT00940000161202	ENSGT00940000163576.j.a	ENSGT00950000183199.a.b.g.a ##22	ENSGT00940000167162.a	ENSGT01100000263479.F.h	ENSGT01030000234778.i	ENSGT00940000158852.g.a.a	ENSGT00940000166708.g	ENSGT00520000055635.c.b.b.a.a.a	ENSGT00940000162624.b	ENSGT00940000159960.d.h	ENSGT00940000157292.fc.b.b	ENSGT00940000160115.a.a.a	ENSGT00390000008714.b.l	ENSGT00390000010549.i	ENSGT00940000165134.b.a	ENSGT00940000165364.a.a.e	ENSGT01030000234988.d
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	2	ENSCCRG00000045120	tpi1b (ENSCCRG00000076555)	lpcat3 (ENSCCRG00000046011)	ENSCCRG00000046082	pex5 (ENSCCRG00000048507)	cdca3 (ENSCCRG00000048856)	ENSCCRG00000048574	usp5 (ENSCCRG00000000248)	ENSCCRG00000078794	cd4-1 (ENSCCRG00000059686)	cxcr3.1 (ENSCCRG00000053462)	cxcr3.3 (ENSCCRG00000057834)	cxcr3.2 (ENSCCRG00000048854)	cnfn (ENSCCRG00000040035)	tlr21 (ENSCCRG00000040032)	ENSCCRG00000059206 ##22	ceacam1 (ENSCCRG00000023335)	ENSCCRG00000031514	ENSCCRG00000081937	ENSCCRG00000038068	ENSCCRG00000022593	ENSCCRG00000081209	ENSCCRG00000066885	ENSCCRG00000056225	ENSCCRG00000063279	ENSCCRG00000053653	grik5 (ENSCCRG00000050777)	znf574 (ENSCCRG00000020429)	gsk3ab (ENSCCRG00000056487)	ENSCCRG00000055763	ENSCCRG00000078378
Common carp reference	MODERN SPECIES	47	ENSCCRG00000075661	tpi1b (ENSCCRG00000065493)	lpcat3 (ENSCCRG00000014820)	ENSCCRG00000013650	pex5 (ENSCCRG00000013549)	cdca3 (ENSCCRG00000013543)	gnb3a (ENSCCRG00000013541)	P3H3 (ENSCCRG00000013538)	usp5 (ENSCCRG00000013025)	ENSCCRG00000040484	cd4-1 (ENSCCRG00000040502)	cxcr3.1 (ENSCCRG00000062938)	cxcr3.3 (ENSCCRG00000078220)	tlr21 (ENSCCRG00000006231)	cxcr3.2 (ENSCCRG00000030459)	ENSCCRG00000069264 ##22	zgc:158701 (ENSCCRG00000074123)	ceacam1 (ENSCCRG00000040021)	ENSCCRG00000038075	ENSCCRG00000038156	grik5 (ENSCCRG00000038082)	znf574 (ENSCCRG00000067426)	gsk3ab (ENSCCRG00000005989)	ENSCCRG00000006239	ENSCCRG00000006097	ENSCCRG00000067264	ENSCCRG00000076881	ENSCCRG00000029642	dedd1 (ENSCCRG00000006274)	rabac1 (ENSCCRG00000006293)	atp1a3b (ENSCCRG00000069738)
Golden-line barbel	MODERN SPECIES	3919															ENSSGRG00000008567	PAFAH1B3 (ENSSGRG00000008559) ##22
Cyprininae	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.g.b ##22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.g.b ##22
Golden-line barbel	MODERN SPECIES	250	si:dkey-26c10.5 (ENSSGRG00000024060)	zgc:92606 (ENSSGRG00000024012)	leng8 (ENSSGRG00000024011)	tpi1b (ENSSGRG00000024010)	lpcat3 (ENSSGRG00000023732)	ENSSGRG00000023729	pex5 (ENSSGRG00000023521)	cdca3 (ENSSGRG00000023519)	ENSSGRG00000023078	ENSSGRG00000023075	cd4-1 (ENSSGRG00000023073)	cxcr3.1 (ENSSGRG00000023071)	cxcr3.3 (ENSSGRG00000023070)	cxcr3.2 (ENSSGRG00000023067)	tlr21 (ENSSGRG00000023065)	ENSSGRG00000023057 ##22	ceacam1 (ENSSGRG00000023055)	ENSSGRG00000023051
Cyprininae	ANCESTRAL SPECIES	124	ENSGT00390000008006.j	ENSGT00390000013354.b.a.a	ENSGT01030000234564.b.b	ENSGT00950000183086.a.b.e	ENSGT00940000156605.v	ENSGT00390000017343.u.b	ENSGT01000000214413.b.a.b.a.a	ENSGT00940000159164.a	ENSGT00940000156036.jb	ENSGT00510000054197.d	ENSGT00390000001745.a.d	ENSGT01050000244848.B.a.b.e.i.e	ENSGT01050000244848.B.a.b.e.j.b	ENSGT01050000244848.B.b.b	ENSGT00940000163576.j.b	ENSGT00950000183199.a.b.h ##22	ENSGT00940000167162.b	ENSGT00940000158852.g.a.b	ENSGT00940000166708.h	ENSGT00520000055635.c.b.b.a.a.b	ENSGT00940000177554	ENSGT00940000162624.a	ENSGT00940000159960.d.g	ENSGT00940000157292.fc.b.a	ENSGT00940000160115.a.a.b	ENSGT00390000008714.b.k	ENSGT00390000010549.j	ENSGT00940000165134.b.b	ENSGT00940000165364.a.a.f	ENSGT01030000234988.c	ENSGT00940000160908.c
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.h ##22
Golden-line barbel	MODERN SPECIES	4284																PAFAH1B3 (ENSSGRG00000001499) ##22
Goldfish	MODERN SPECIES	7	lpcat3 (ENSCARG00000029844)	CLSTN3 (ENSCARG00000029931)	pex5 (ENSCARG00000031003)	cdca3 (ENSCARG00000031252)	gnb3a (ENSCARG00000031276)	P3H3 (ENSCARG00000031285)	usp5 (ENSCARG00000031370)	ENSCARG00000034429	cd4-1 (ENSCARG00000034477)	cxcr3.1 (ENSCARG00000034547)	cxcr3.3 (ENSCARG00000034562)	cxcr3.2 (ENSCARG00000034570)	cnfn (ENSCARG00000034583)	tlr21 (ENSCARG00000034586)	tlr21 (ENSCARG00000034606)	PAFAH1B3 (ENSCARG00000034611) ##22	ceacam1 (ENSCARG00000034628)	ENSCARG00000034654	grik5 (ENSCARG00000034665)	znf574 (ENSCARG00000034690)	gsk3ab (ENSCARG00000034703)	ZNF526 (ENSCARG00000034737)	ENSCARG00000034745	ENSCARG00000034765	ENSCARG00000034817	ENSCARG00000034832	dedd1 (ENSCARG00000034893)	rabac1 (ENSCARG00000034908)	atp1a3b (ENSCARG00000035017)	ENSCARG00000036748	ENSCARG00000036846
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	7	CLSTN3 (ENSDARG00000073883)	pex5 (ENSDARG00000070654)	cdca3 (ENSDARG00000070656)	gnb3a (ENSDARG00000004358)	P3H3 (ENSDARG00000057879)	usp5 (ENSDARG00000014517)	ENSDARG00000073950	ENSDARG00000079769	cd4-1 (ENSDARG00000070668)	cxcr3.1 (ENSDARG00000007358)	cxcr3.3 (ENSDARG00000070669)	cxcr3.2 (ENSDARG00000041041)	cnfn (ENSDARG00000041115)	tlr21 (ENSDARG00000058045)	ENSDARG00000092169	pafah1b3 (ENSDARG00000058047) ##22	PAFAH1B3 (ENSDARG00000105336) ##22	zgc:158701 (ENSDARG00000091864)	ceacam1 (ENSDARG00000041119)	ENSDARG00000095048	ENSDARG00000092520	ENSDARG00000095134	ENSDARG00000078177	ENSDARG00000093279	ENSDARG00000105324	ENSDARG00000105461	ENSDARG00000095772	zgc:198329 (ENSDARG00000076981)	grik5 (ENSDARG00000101449)	znf574 (ENSDARG00000087074)	gsk3ab (ENSDARG00000015681)
Zebrafish	MODERN SPECIES	7	pex5 (ENSDARG00000070654)	cdca3 (ENSDARG00000070656)	gnb3a (ENSDARG00000004358)	P3H3 (ENSDARG00000057879)	usp5 (ENSDARG00000014517)	ENSDARG00000073950	ENSDARG00000079769	cd4-1 (ENSDARG00000070668)	cxcr3.1 (ENSDARG00000007358)	cxcr3.3 (ENSDARG00000070669)	cxcr3.2 (ENSDARG00000041041)	cnfn (ENSDARG00000041115)	tlr21 (ENSDARG00000058045)	ENSDARG00000092169	pafah1b3 (ENSDARG00000058047) ##22	PAFAH1B3 (ENSDARG00000105336) ##22	zgc:158701 (ENSDARG00000091864)	ceacam1 (ENSDARG00000041119)	ENSDARG00000095048	ENSDARG00000092520	ENSDARG00000095134	ENSDARG00000078177	ENSDARG00000093279	ENSDARG00000105324	ENSDARG00000105461	ENSDARG00000095772	zgc:198329 (ENSDARG00000076981)	grik5 (ENSDARG00000101449)	znf574 (ENSDARG00000087074)	gsk3ab (ENSDARG00000015681)	ENSDARG00000077143
Osteoglossiformes	ANCESTRAL SPECIES		ENSGT00390000010698	ENSGT00940000153981.B	ENSGT00980000198994	ENSGT00730000111056.g	ENSGT00940000154363.A	ENSGT00940000161180	ENSGT00940000163212.B	ENSGT01100000263491.a.b.a.a.a.a.b	ENSGT00940000160262	ENSGT01030000234583.a.a.c.a.a	ENSGT01050000244848.B.a.b	ENSGT01050000244848.B.b	ENSGT00940000161202	ENSGT00940000163576	ENSGT00940000177028	ENSGT00950000183199.a.b ##22	ENSGT01100000263479.G	ENSGT01100000263479.H	ENSGT01100000263956	ENSGT00940000158852.a	ENSGT00940000166708	ENSGT00520000055635.c.b.b	ENSGT00940000177554	ENSGT00940000162624	ENSGT00940000159960.d	ENSGT00940000157292.fc.b	ENSGT00940000160115.a.a	ENSGT00390000008714.b	ENSGT00390000010549	ENSGT00940000165134.c	ENSGT00940000165364.a.a.q
Asian bonytongue	MODERN SPECIES	9	mrpl17 (ENSSFOG00015021634)	TMEM145 (ENSSFOG00015021647)	ENSSFOG00015021677	ENSSFOG00015021662	cd79a (ENSSFOG00015021684)	arhgef1b (ENSSFOG00015021721)	ENSSFOG00015021824	ENSSFOG00015021831	MEGF8 (ENSSFOG00015021855)	ENSSFOG00015021974	ENSSFOG00015026335	ENSSFOG00015021987	cxcr3.2 (ENSSFOG00015031772)	cnfn (ENSSFOG00015022004)	tlr21 (ENSSFOG00015022011)	pafah1b3 (ENSSFOG00015022047) ##22	ENSSFOG00015022071	ENSSFOG00015026941	ENSSFOG00015022131	ENSSFOG00015014966	ENSSFOG00015028039	ENSSFOG00015026797	ENSSFOG00015028746	ENSSFOG00015027222	grik5 (ENSSFOG00015014897)	znf574 (ENSSFOG00015025340)	gsk3ab (ENSSFOG00015014824)	ENSSFOG00015025170	ENSSFOG00015030750	CIC (ENSSFOG00015014684)	ERF (ENSSFOG00015032309)
P. kingsleyae	MODERN SPECIES	280	TMEM145 (ENSPKIG00000021311)	ENSPKIG00000021297	LIPE (ENSPKIG00000021278)	cd79a (ENSPKIG00000021257)	arhgef1b (ENSPKIG00000021036)	ENSPKIG00000020971	ENSPKIG00000020950	MEGF8 (ENSPKIG00000020889)	trim35-28 (ENSPKIG00000020854)	CXCR3 (ENSPKIG00000020845)	CXCR3 (ENSPKIG00000020841)	cxcr3.2 (ENSPKIG00000020831)	cnfn (ENSPKIG00000020812)	tlr21 (ENSPKIG00000020801)	ENSPKIG00000020789	pafah1b3 (ENSPKIG00000020769) ##22
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	8	ENSECRG00000019159	mrpl17 (ENSECRG00000019115)	ENSECRG00000019102	ENSECRG00000019084	ENSECRG00000019067	ENSECRG00000018990	arhgef1b (ENSECRG00000018798)	cd79a (ENSECRG00000018725)	LIPE (ENSECRG00000018672)	TMEM145 (ENSECRG00000018624)	ENSECRG00000016686	cxcr3.1 (ENSECRG00000016462)	cxcr3.2 (ENSECRG00000016436)	cnfn (ENSECRG00000016412)	tlr21 (ENSECRG00000016380)	PAFAH1B3 (ENSECRG00000016360) ##22	ENSECRG00000021836	ENSECRG00000021824	ENSECRG00000021814	ENSECRG00000021807	ENSECRG00000021797	ENSECRG00000021784	ENSECRG00000021751	ENSECRG00000021720	ENSECRG00000021679	ENSECRG00000021646	DUOXA2 (ENSECRG00000021608)	stoml1 (ENSECRG00000021585)	cyp11a1.1 (ENSECRG00000021569)	ENSECRG00000021542	stra6 (ENSECRG00000021517)
Reedfish	MODERN SPECIES	81																ENSECRG00000021286 ##22	ENSECRG00000021268	ENSECRG00000021256
Sarcopterygii	ANCESTRAL SPECIES	4	ENSGT00390000003601.a	ENSGT01060000248564.b.a.b.b	ENSGT00950000182962.a.b	ENSGT00940000159450	ENSGT00940000155753	ENSGT00940000159746	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000160087	ENSGT00940000155902	ENSGT00390000012030.b.a	ENSGT00390000012178	ENSGT00940000159568	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00390000008820.f	ENSGT00940000159055	ENSGT01060000248594.e.a
Tetrapoda	ANCESTRAL SPECIES	20	ENSGT00390000003601.a	ENSGT01060000248564.b.a.b.b	ENSGT00950000182962.a.b	ENSGT00940000159450	ENSGT00940000155753	ENSGT00940000159746	ENSGT00940000156281	ENSGT01020000230412.D	ENSGT00940000158214	ENSGT00940000160087	ENSGT00940000155902	ENSGT00390000012030.b.a	ENSGT00390000012178	ENSGT00940000159568	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00390000008820.f	ENSGT00940000159055	ENSGT01060000248594.e.a	ENSGT00940000159922.b	ENSGT00510000047493
Amniota	ANCESTRAL SPECIES	107																ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A
Sauria	ANCESTRAL SPECIES	43	ENSGT01020000230438.B.a.a	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT00940000162297.h	ENSGT00390000013102.e.a	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265	ENSGT00940000162297.g	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576
Lepidosauria	ANCESTRAL SPECIES	113					ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000154265.yb	ENSGT00940000162297.g	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00940000157920.b	ENSGT00730000111056
Episquamata	ANCESTRAL SPECIES	7	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00960000189159	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000154265.yb	ENSGT00940000162297.g	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00940000157920.b	ENSGT00730000111056	ENSGT01100000263479.D.a	ENSGT01100000263479.E	ENSGT00950000185100
Laterata	ANCESTRAL SPECIES	17	ENSGT00730000113550	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00960000190411	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b	ENSGT00940000154265.yb	ENSGT00940000162297.g.f	ENSGT00940000154265.`c.d	ENSGT00940000154265.`c.c.a	ENSGT00940000162297.g.e.a	ENSGT00940000154265.`c.c.b	ENSGT00940000162297.g.e.b	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00960000189159	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00940000163576
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000008960	ENSPMRG00000008952	CADM4 (ENSPMRG00000008941)	RPS19 (ENSPMRG00000008934)	ENSPMRG00000008923	ENSPMRG00000008921	ENSPMRG00000008916	ENSPMRG00000008910	ENSPMRG00000008907	ENSPMRG00000008905	ENSPMRG00000008898	ENSPMRG00000008894	ENSPMRG00000008878	ENSPMRG00000008783	ENSPMRG00000008756	PAFAH1B3 (ENSPMRG00000008752) ##22	CIC (ENSPMRG00000008732)	ENSPMRG00000008723	GSK3A (ENSPMRG00000008717)	ZNF526 (ENSPMRG00000008714)	DEDD2 (ENSPMRG00000008710)	ENSPMRG00000008701	POU2F2 (ENSPMRG00000008687)	ZNF574 (ENSPMRG00000008683)	GRIK5 (ENSPMRG00000008664)	ENSPMRG00000008651	ATP1A3 (ENSPMRG00000008633)	ENSPMRG00000008627	ENSPMRG00000008623	ENSPMRG00000008613	ENSPMRG00000008605
Argentine black and white tegu	MODERN SPECIES	59	ENSSMRG00000005586	ZNF576 (ENSSMRG00000005588)	ENSSMRG00000005593	ENSSMRG00000005595	CADM4 (ENSSMRG00000005596)	ENSSMRG00000005627	ENSSMRG00000005631	ENSSMRG00000005772	ENSSMRG00000005788	ENSSMRG00000005804	ENSSMRG00000005805	ENSSMRG00000005806	ENSSMRG00000005807	ENSSMRG00000005808	ENSSMRG00000005822	PAFAH1B3 (ENSSMRG00000005828) ##22	CIC (ENSSMRG00000005892)	ENSSMRG00000005911	GSK3A (ENSSMRG00000005912)	ZNF526 (ENSSMRG00000005914)	DEDD2 (ENSSMRG00000005915)	POU2F2 (ENSSMRG00000005916)	ZNF574 (ENSSMRG00000005918)	GRIK5 (ENSSMRG00000005921)	ATP1A3 (ENSSMRG00000005944)	ENSSMRG00000005955	RABAC1 (ENSSMRG00000005958)	ENSSMRG00000005960	ENSSMRG00000005961	ARHGEF1 (ENSSMRG00000005965)	ENSSMRG00000005968
Toxicofera	ANCESTRAL SPECIES	22		ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00960000189159	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00940000157920.b	ENSGT00730000111056	ENSGT01100000263479.D.a	ENSGT01100000263479.E	ENSGT01050000244883.C
Elapidae	ANCESTRAL SPECIES	9	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00960000189159	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00940000157920.b	ENSGT00730000111056	ENSGT01100000263479.B	ENSGT01100000263479.D.a
Elapidae_a	ANCESTRAL SPECIES	33	ENSGT00950000183206.a.b.a.b	ENSGT00940000153599.B.a	ENSGT01020000230438.B.a.a.bb.a	ENSGT01020000230438.B.a.a.bb.b	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00940000157920.b	ENSGT00730000111056	ENSGT01100000263479.B	ENSGT01000000215536.B
Acanthophiinae	ANCESTRAL SPECIES	32	ENSGT00940000153599.B.a	ENSGT01020000230438.B.a.a.bb.a	ENSGT01020000230438.B.a.a.bb.b	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00940000162551	ENSGT00390000004140.a	ENSGT00990000208224.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.`c	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000161799	ENSGT00940000158852	ENSGT00960000189159	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT01100000263489.a.a.b.b.c.a	ENSGT00940000158211	ENSGT00950000185905
Eastern brown snake	MODERN SPECIES	77								ENSPTXG00000013281	ENSPTXG00000013280	ENSPTXG00000013279	ENSPTXG00000013278	ENSPTXG00000013276	CADM4 (ENSPTXG00000019143)	RPS19 (ENSPTXG00000019142)	ENSPTXG00000019140	PAFAH1B3 (ENSPTXG00000019138) ##22	CIC (ENSPTXG00000019136)	ENSPTXG00000019134	GSK3A (ENSPTXG00000019133)	ZNF526 (ENSPTXG00000019131)	DEDD2 (ENSPTXG00000019130)	ZNF574 (ENSPTXG00000019128)	GRIK5 (ENSPTXG00000019124)	ENSPTXG00000019122	ENSPTXG00000019102	RABAC1 (ENSPTXG00000019099)	ENSPTXG00000019098	ENSPTXG00000019097	ARHGEF1 (ENSPTXG00000019095)	ENSPTXG00000019093	ENSPTXG00000019092
Mainland tiger snake	MODERN SPECIES	1497																PAFAH1B3 (ENSNSUG00000001104) ##22
Blue-lipped sea krait	MODERN SPECIES	7295																PAFAH1B3 (ENSLLTG00000005167) ##22
Indian cobra	MODERN SPECIES	11	ENSNNAG00000003769	ENSNNAG00000003780	XRCC1 (ENSNNAG00000003829)	ENSNNAG00000004107	ENSNNAG00000004130	ENSNNAG00000004164	ENSNNAG00000004169	ENSNNAG00000004196	ENSNNAG00000004215	ENSNNAG00000004229	CADM4 (ENSNNAG00000004262)	ENSNNAG00000004297	ENSNNAG00000004342	ENSNNAG00000004375	ENSNNAG00000004452	PAFAH1B3 (ENSNNAG00000004692) ##22	CIC (ENSNNAG00000004736)	ENSNNAG00000005013	GSK3A (ENSNNAG00000005075)	DEDD2 (ENSNNAG00000005193)	ENSNNAG00000005224	ENSNNAG00000005281	ZNF574 (ENSNNAG00000005293)	GRIK5 (ENSNNAG00000005420)	ATP1A3 (ENSNNAG00000006679)	ENSNNAG00000013552	ENSNNAG00000013568	ARHGEF1 (ENSNNAG00000013616)	ENSNNAG00000013911	ENSNNAG00000013925	PRDM7 (ENSNNAG00000013938)
tuatara	MODERN SPECIES	1580				ENSSPUG00000015920	ENSSPUG00000015934	ZNF576 (ENSSPUG00000015942)	ENSSPUG00000015950	CADM4 (ENSSPUG00000015976)	RPS19 (ENSSPUG00000016051)	ENSSPUG00000016105	ENSSPUG00000016251	ENSSPUG00000016293	ENSSPUG00000016498	ENSSPUG00000016510	ENSSPUG00000016520	PAFAH1B3 (ENSSPUG00000016531) ##22	ENSSPUG00000016538	ENSSPUG00000016548	ERF (ENSSPUG00000016555)	GSK3A (ENSSPUG00000016559)	ZNF526 (ENSSPUG00000016569)	DEDD2 (ENSSPUG00000016572)	POU2F2 (ENSSPUG00000016579)	GRIK5 (ENSSPUG00000016676)	ATP1A3 (ENSSPUG00000016698)	RABAC1 (ENSSPUG00000016746)	ENSSPUG00000016770	ENSSPUG00000016807	CD79A (ENSSPUG00000016813)	PRDM7 (ENSSPUG00000016819)	TMEM145 (ENSSPUG00000016829)
Archelosauria	ANCESTRAL SPECIES	48	ENSGT01020000230438.B.a.a	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00940000161223	ENSGT00390000013102.f	ENSGT00940000162297.h	ENSGT00390000013102.e.a	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a	ENSGT00940000162297.g	ENSGT00940000154265.bc	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476.b	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00940000158211	ENSGT00950000185905	ENSGT00940000163576
Cryptodira	ANCESTRAL SPECIES	68	ENSGT01020000230438.B.a.a	ENSGT00940000160803	ENSGT00940000159046.C	ENSGT00390000004140.a	ENSGT00950000183007.a.a.a.a	ENSGT00950000183007.a.b	ENSGT00730000111407	ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b	ENSGT00390000013102.e.a	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a	ENSGT00940000162297.g	ENSGT00940000154265.bc	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000158852	ENSGT00940000160476.b	ENSGT00390000010549
Testudinoidea	ANCESTRAL SPECIES	66						ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b	ENSGT00390000013102.e.a	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a.d	ENSGT00940000154265.ac.a.c	ENSGT00940000154265.bc.a.a.b.b	ENSGT00940000162297.g	ENSGT00940000154265.bc.a.b.b	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000158852	ENSGT00940000160476.b	ENSGT00390000010549
Testudinidae	ANCESTRAL SPECIES	125															ENSGT00940000154265.bc.a.b.a	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b
Goode s thornscrub tortoise	MODERN SPECIES	122	ENSGEVG00005017257	ENSGEVG00005017264	ENSGEVG00005017282	ENSGEVG00005017306	ENSGEVG00005017373	ENSGEVG00005017498	CADM4 (ENSGEVG00005017512)	ENSGEVG00005017527	ENSGEVG00005017544	ENSGEVG00005017604	ENSGEVG00005012802	ENSGEVG00005012850	ENSGEVG00005012863	ENSGEVG00005012907	ENSGEVG00005013000	PAFAH1B3 (ENSGEVG00005013045) ##22	ERF (ENSGEVG00005013248)
Abingdon island giant tortoise	MODERN SPECIES	447													ENSCABG00000001132	ENSCABG00000001177	ENSCABG00000001184	PAFAH1B3 (ENSCABG00000001186) ##22	CIC (ENSCABG00000001195)	ENSCABG00000001734	GSK3A (ENSCABG00000001745)	ZNF526 (ENSCABG00000002042)	DEDD2 (ENSCABG00000002045)
Emydidae	ANCESTRAL SPECIES	106							ENSGT00950000185295	ENSGT00940000161223	ENSGT00390000013102.e.b	ENSGT01030000234555.a.a.b.b	ENSGT00940000154265.ac.a.d	ENSGT00940000154265.ac.a.c	ENSGT00940000154265.bc.a.a.b.b	ENSGT00940000162297.g.b	ENSGT00940000154265.bc.a.b.b	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000160115	ENSGT00940000158852	ENSGT00940000160476.b
painted turtle	MODERN SPECIES	1096							ENSCPBG00000014567	CADM4 (ENSCPBG00000014564)	RPS19 (ENSCPBG00000014561)	ENSCPBG00000014558	ENSCPBG00000014553	ENSCPBG00000014550	ENSCPBG00000014533	ENSCPBG00000013759	ENSCPBG00000013744	PAFAH1B3 (ENSCPBG00000013743) ##22	CIC (ENSCPBG00000013740)	ENSCPBG00000013738	GSK3A (ENSCPBG00000013663)	ENSCPBG00000013652	POU2F2 (ENSCPBG00000013649)	GRIK5 (ENSCPBG00000013608)	ATP1A3 (ENSCPBG00000003845)
Mammalia	ANCESTRAL SPECIES	95									ENSGT01100000263479.A	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00960000189159	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00530000063351	ENSGT00940000153599.B.a
Theria	ANCESTRAL SPECIES	27									ENSGT01100000263479.A	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00960000189159	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Marsupialia	ANCESTRAL SPECIES	20	ENSGT00940000161167.b.b	ENSGT00940000161167.a	ENSGT00940000161038	ENSGT00940000162336	ENSGT00940000161392	ENSGT01100000263479.C	ENSGT01100000263479.B	ENSGT00940000161167.b.a	ENSGT01100000263479.E.h.b	ENSGT01100000263479.A.g.a.a.a	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00390000010703	ENSGT00940000153981.B	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000161038	ENSGT00940000162336	ENSGT00940000161392	ENSGT01100000263479.C	ENSGT01100000263479.B	ENSGT00940000161167.b.a	ENSGT01100000263479.E.h.b	ENSGT01100000263479.D.b	ENSGT01100000263479.A.g.a.a.a	ENSGT01100000263479.A.g.a.b	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00390000010703	ENSGT00940000153981.B	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT01040000241026	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f
Diprotodontia	ANCESTRAL SPECIES	52	ENSGT00940000161038	ENSGT00940000162336	ENSGT00940000161392	ENSGT01100000263479.C	ENSGT01100000263479.B	ENSGT00940000161167.b.a	ENSGT01100000263479.D.b	ENSGT01100000263479.A.g.a.a.a	ENSGT01100000263479.A.g.a.b	ENSGT01100000263479.A.g.a.a.b	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00390000010703	ENSGT00940000153981.B	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT01040000241026	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Diprotodontia_a	ANCESTRAL SPECIES	45	ENSGT00940000161038	ENSGT00940000162336	ENSGT00940000161392	ENSGT01100000263479.C	ENSGT01100000263479.B	ENSGT00940000161167.b.a	ENSGT01100000263479.D.b	ENSGT01100000263479.A.g.a.a.a	ENSGT01100000263479.A.g.a.b	ENSGT01100000263479.A.g.a.a.b	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00390000010703	ENSGT00940000153981.B	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT01040000241026	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Common wonbat	MODERN SPECIES	783													ENSVURG00010009849	ENSVURG00010009835	TMEM145 (ENSVURG00010009799)	PAFAH1B3 (ENSVURG00010009793) ##22	ENSVURG00010009779	ERF (ENSVURG00010009762)	GSK3A (ENSVURG00010009697)	ZNF526 (ENSVURG00010009687)	DEDD2 (ENSVURG00010009683)	POU2F2 (ENSVURG00010009672)	ZNF574 (ENSVURG00010009667)	GRIK5 (ENSVURG00010009647)	ATP1A3 (ENSVURG00010009395)	RABAC1 (ENSVURG00010009370)	ENSVURG00010009363	ARHGEF1 (ENSVURG00010009107)	CD79A (ENSVURG00010009070)	ENSVURG00010009061	ENSVURG00010009054
koala	MODERN SPECIES	100	CBLC (ENSPCIG00000001899)	BCL3 (ENSPCIG00000001877)	CEACAM16 (ENSPCIG00000001694)	ENSPCIG00000001678	ENSPCIG00000033074	ENSPCIG00000022892	ENSPCIG00000012522	ENSPCIG00000033973	ENSPCIG00000034185	ENSPCIG00000020891	LIPE (ENSPCIG00000004879)	ENSPCIG00000004873	MEGF8 (ENSPCIG00000037329)	ENSPCIG00000020885	TMEM145 (ENSPCIG00000020884)	PAFAH1B3 (ENSPCIG00000034607) ##22	ERF (ENSPCIG00000020875)	GSK3A (ENSPCIG00000020874)	ZNF526 (ENSPCIG00000020873)	ENSPCIG00000032925	POU2F2 (ENSPCIG00000005189)	ZNF574 (ENSPCIG00000005174)	GRIK5 (ENSPCIG00000013763)	ATP1A3 (ENSPCIG00000013743)	RABAC1 (ENSPCIG00000013738)	ENSPCIG00000013735	ENSPCIG00000004723	ARHGEF1 (ENSPCIG00000004739)	CD79A (ENSPCIG00000023360)	ENSPCIG00000020871	ENSPCIG00000020868
Wallaby	MODERN SPECIES	7533																PAFAH1B3 (ENSMEUG00000016654) ##22	ENSMEUG00000016625
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000026651	ENSSHAG00000001185	ENSSHAG00000000502	ENSSHAG00000000655	ENSSHAG00000004197	ENSSHAG00000004943	ENSSHAG00000002483	ENSSHAG00000005371	ENSSHAG00000002909	ENSSHAG00000027528	ENSSHAG00000027628	ENSSHAG00000023880	ENSSHAG00000030542	ENSSHAG00000030300	ENSSHAG00000021726	PAFAH1B3 (ENSSHAG00000030701) ##22	ENSSHAG00000001096	DEDD2 (ENSSHAG00000002207)	ENSSHAG00000020903	ZNF574 (ENSSHAG00000030562)	GRIK5 (ENSSHAG00000008541)	ATP1A3 (ENSSHAG00000008250)	RABAC1 (ENSSHAG00000031670)	ENSSHAG00000022230	ERFL (ENSSHAG00000025037)	ARHGEF1 (ENSSHAG00000021894)	ENSSHAG00000023118	ENSSHAG00000029316	ENSSHAG00000028065	ENSSHAG00000027176	ENSSHAG00000005369
Opossum	MODERN SPECIES	403														ENSMODG00000049629	TMEM145 (ENSMODG00000019338)	PAFAH1B3 (ENSMODG00000019346) ##22	ENSMODG00000028836	ZNF574 (ENSMODG00000019345)
Eutheria	ANCESTRAL SPECIES	29							ENSGT00530000063351.a.a	ENSGT01100000263479.D.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Boreoeutheria	ANCESTRAL SPECIES	5	ENSGT00390000015495	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Laurasiatheria	ANCESTRAL SPECIES	5	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.a.c.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Eulipotyphla	ANCESTRAL SPECIES	320														ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960
Common shrew	MODERN SPECIES	499															ENSSARG00000003329	PAFAH1B3 (ENSSARG00000003303) ##22	ENSSARG00000003249
Laurasiatheria_a	ANCESTRAL SPECIES	5	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01030000237327	ENSGT00940000171483	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Laurasiatheria_b	ANCESTRAL SPECIES	5	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.b.a	ENSGT01030000237327	ENSGT00940000171483	ENSGT00730000111056	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Carnivora	ANCESTRAL SPECIES	2	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Felidae	DUPLICATION
Felidae	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.m ##22
Cat	MODERN SPECIES	1	DPY19L2 (ENSFCAG00000007045)	TBX20 (ENSFCAG00000013004)	HERPUD2 (ENSFCAG00000043829)	SEPTIN7 (ENSFCAG00000028220)	EEPD1 (ENSFCAG00000007621)	MATCAP2 (ENSFCAG00000007622)	ANLN (ENSFCAG00000007624)	AOAH (ENSFCAG00000007628)	ELMO1 (ENSFCAG00000004630)	GPR141 (ENSFCAG00000015343)	THAP5 (ENSFCAG00000035022)	DNAJB9 (ENSFCAG00000032182)	ENSFCAG00000049979	IMMP2L (ENSFCAG00000033257)	LRRN3 (ENSFCAG00000032002)	ENSFCAG00000012739 ##22	DOCK4 (ENSFCAG00000012655)	ZNF277 (ENSFCAG00000015127)	IFRD1 (ENSFCAG00000015130)	LSMEM1 (ENSFCAG00000036448)	TMEM168 (ENSFCAG00000022031)	BMT2 (ENSFCAG00000040240)	ENSFCAG00000051776	GPR85 (ENSFCAG00000023487)	SMIM30 (ENSFCAG00000040441)	PPP1R3A (ENSFCAG00000026838)	FOXP2 (ENSFCAG00000006921)	MDFIC (ENSFCAG00000046079)	TFEC (ENSFCAG00000027627)	TES (ENSFCAG00000029911)	CAV2 (ENSFCAG00000023324)
Felidae	ANCESTRAL SPECIES	7	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.n ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Panthera	ANCESTRAL SPECIES	20	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.n ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Tiger	MODERN SPECIES	246	CCDC97 (ENSPTIG00000013067)	TGFB1 (ENSPTIG00000013742)	B9D2 (ENSPTIG00000014481)	TMEM91 (ENSPTIG00000014938)	EXOSC5 (ENSPTIG00000015884)	BCKDHA (ENSPTIG00000017890)	DMAC2 (ENSPTIG00000019804)	ERICH4 (ENSPTIG00000006672)	ENSPTIG00000007025	CXCL17 (ENSPTIG00000008290)	LIPE (ENSPTIG00000008874)	ENSPTIG00000011269	MEGF8 (ENSPTIG00000011829)	TMEM145 (ENSPTIG00000018901)	PRR19 (ENSPTIG00000007221)	PAFAH1B3 (ENSPTIG00000008030) ##22	CIC (ENSPTIG00000008996)	ERF (ENSPTIG00000013584)	GSK3A (ENSPTIG00000014636)	ZNF526 (ENSPTIG00000016033)	DEDD2 (ENSPTIG00000016247)	ZNF574 (ENSPTIG00000006879)	GRIK5 (ENSPTIG00000019069)	ATP1A3 (ENSPTIG00000004401)	ENSPTIG00000014231	ERFL (ENSPTIG00000014623)	ARHGEF1 (ENSPTIG00000016034)	ENSPTIG00000006521	DMRTC2 (ENSPTIG00000009674)	LYPD4 (ENSPTIG00000011907)	ENSPTIG00000012854
Panthera_a	ANCESTRAL SPECIES	22	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.a.b.d	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.n ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
leopard	MODERN SPECIES	165	TMEM91 (ENSPPRG00000003672)	EXOSC5 (ENSPPRG00000003713)	BCKDHA (ENSPPRG00000003740)	ENSPPRG00000011743	ENSPPRG00000011744	DMAC2 (ENSPPRG00000003894)	ERICH4 (ENSPPRG00000003928)	ENSPPRG00000004013	ENSPPRG00000004091	CXCL17 (ENSPPRG00000004116)	LIPE (ENSPPRG00000004305)	CNFN (ENSPPRG00000004339)	MEGF8 (ENSPPRG00000004589)	TMEM145 (ENSPPRG00000004698)	PRR19 (ENSPPRG00000004728)	PAFAH1B3 (ENSPPRG00000004745) ##22	CIC (ENSPPRG00000004914)	GSK3A (ENSPPRG00000005007)	ERF (ENSPPRG00000005019)	ZNF526 (ENSPPRG00000007308)	DEDD2 (ENSPPRG00000007326)	POU2F2 (ENSPPRG00000007803)	ZNF574 (ENSPPRG00000011771)	GRIK5 (ENSPPRG00000007924)	ATP1A3 (ENSPPRG00000008238)	RABAC1 (ENSPPRG00000008295)	ERFL (ENSPPRG00000008331)	ARHGEF1 (ENSPPRG00000008642)	CD79A (ENSPPRG00000008704)	RPS19 (ENSPPRG00000008756)	DMRTC2 (ENSPPRG00000008914)
lion	MODERN SPECIES	15	B9D2 (ENSPLOG00000006618)	TMEM91 (ENSPLOG00000006632)	EXOSC5 (ENSPLOG00000006679)	BCKDHA (ENSPLOG00000006715)	B3GNT8 (ENSPLOG00000006750)	DMAC2 (ENSPLOG00000006789)	ENSPLOG00000006846	ENSPLOG00000006902	CXCL17 (ENSPLOG00000007022)	ENSPLOG00000007035	LIPE (ENSPLOG00000007057)	CNFN (ENSPLOG00000007085)	ENSPLOG00000007105	TMEM145 (ENSPLOG00000007245)	PRR19 (ENSPLOG00000007462)	PAFAH1B3 (ENSPLOG00000007480) ##22	CIC (ENSPLOG00000007521)	ERF (ENSPLOG00000007581)	GSK3A (ENSPLOG00000007615)	ZNF526 (ENSPLOG00000007664)	DEDD2 (ENSPLOG00000007677)	POU2F2 (ENSPLOG00000007798)	ZNF574 (ENSPLOG00000008426)	GRIK5 (ENSPLOG00000008447)	ATP1A3 (ENSPLOG00000008601)	RABAC1 (ENSPLOG00000009062)	ERFL (ENSPLOG00000009162)	ARHGEF1 (ENSPLOG00000009304)	CD79A (ENSPLOG00000009705)	RPS19 (ENSPLOG00000009766)	DMRTC2 (ENSPLOG00000009804)
Cat	MODERN SPECIES	246	B9D2 (ENSFCAG00000036761)	TMEM91 (ENSFCAG00000025096)	EXOSC5 (ENSFCAG00000033818)	BCKDHA (ENSFCAG00000005438)	B3GNT8 (ENSFCAG00000005440)	DMAC2 (ENSFCAG00000002361)	ERICH4 (ENSFCAG00000009918)	ENSFCAG00000003035	CXCL17 (ENSFCAG00000040968)	ENSFCAG00000053328	LIPE (ENSFCAG00000022678)	CNFN (ENSFCAG00000012749)	MEGF8 (ENSFCAG00000012745)	TMEM145 (ENSFCAG00000012742)	PRR19 (ENSFCAG00000012741)	PAFAH1B3 (ENSFCAG00000003598) ##22	CIC (ENSFCAG00000012737)	ERF (ENSFCAG00000030101)	GSK3A (ENSFCAG00000030846)	ZNF526 (ENSFCAG00000022743)	DEDD2 (ENSFCAG00000012732)	POU2F2 (ENSFCAG00000012731)	ZNF574 (ENSFCAG00000022250)	GRIK5 (ENSFCAG00000012730)	ATP1A3 (ENSFCAG00000012729)	RABAC1 (ENSFCAG00000024180)	ERFL (ENSFCAG00000035386)	ARHGEF1 (ENSFCAG00000008128)	CD79A (ENSFCAG00000008129)	DMRTC2 (ENSFCAG00000008126)	LYPD4 (ENSFCAG00000004845)
Caniformia	ANCESTRAL SPECIES	1	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.b.a.b.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.a	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Canidae	DUPLICATION
Canidae	ANCESTRAL SPECIES	5	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.o ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Canis_lupus	ANCESTRAL SPECIES		ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.b.b.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.a.a	ENSGT01100000263479.D.a.b.a.b.a.b.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.o ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.a	ENSGT00940000161904
Dog	MODERN SPECIES		ZNF576 (ENSCAFG00845000088)	IRGQ (ENSCAFG00845000097)	PINLYP (ENSCAFG00845000108)	XRCC1 (ENSCAFG00845000135)	ZNF575 (ENSCAFG00845000167)	PHLDB3 (ENSCAFG00845000239)	LYPD3 (ENSCAFG00845000436)	TEX101 (ENSCAFG00845000460)	ENSCAFG00845000474	CEACAM1 (ENSCAFG00845000573)	ENSCAFG00845000701	ENSCAFG00845000713	LIPE (ENSCAFG00845000721)	CNFN (ENSCAFG00845000749)	ENSCAFG00845000769	PAFAH1B3 (ENSCAFG00845000778) ##22	TMEM145 (ENSCAFG00845000809)	PRR19 (ENSCAFG00845000828)	CIC (ENSCAFG00845000846)	ERF (ENSCAFG00845000876)	GSK3A (ENSCAFG00845000891)	ZNF526 (ENSCAFG00845000921)	DEDD2 (ENSCAFG00845000934)	POU2F2 (ENSCAFG00845000999)	ZNF574 (ENSCAFG00845001108)	GRIK5 (ENSCAFG00845001140)	ATP1A3 (ENSCAFG00845001235)	RABAC1 (ENSCAFG00845001408)	ERFL (ENSCAFG00845001434)	ARHGEF1 (ENSCAFG00845001568)	CD79A (ENSCAFG00845001724)
Dingo	MODERN SPECIES	125	PHLDB3 (ENSCAFG00020014022)	LYPD3 (ENSCAFG00020014035)	TEX101 (ENSCAFG00020014049)	CD177 (ENSCAFG00020014056)	ENSCAFG00020014071	ENSCAFG00020014074	ENSCAFG00020014079	ENSCAFG00020014081	ENSCAFG00020014093	ENSCAFG00020014150	LIPE (ENSCAFG00020014155)	CNFN (ENSCAFG00020014171)	MEGF8 (ENSCAFG00020014183)	TMEM145 (ENSCAFG00020014279)	PRR19 (ENSCAFG00020014335)	ENSCAFG00020014336 ##22	CIC (ENSCAFG00020014340)	ERF (ENSCAFG00020014347)	GSK3A (ENSCAFG00020014351)	ZNF526 (ENSCAFG00020014510)	DEDD2 (ENSCAFG00020014511)	POU2F2 (ENSCAFG00020014519)	ZNF574 (ENSCAFG00020014558)	GRIK5 (ENSCAFG00020014562)	ATP1A3 (ENSCAFG00020014636)	RABAC1 (ENSCAFG00020014693)	ENSCAFG00020014701	ARHGEF1 (ENSCAFG00020014703)	CD79A (ENSCAFG00020014709)	ENSCAFG00020014712	DMRTC2 (ENSCAFG00020014713)
Red fox	MODERN SPECIES	101	CD177 (ENSVVUG00000009048)	ENSVVUG00000009056	ENSVVUG00000009071	ENSVVUG00000009078	ENSVVUG00000009089	ENSVVUG00000009099	ENSVVUG00000009101	ENSVVUG00000009105	ENSVVUG00000009110	ENSVVUG00000009145	ENSVVUG00000009150	LIPE (ENSVVUG00000009152)	CNFN (ENSVVUG00000009163)	MEGF8 (ENSVVUG00000009173)	TMEM145 (ENSVVUG00000009304)	PAFAH1B3 (ENSVVUG00000009493) ##22	CIC (ENSVVUG00000009518)	ERF (ENSVVUG00000009590)	GSK3A (ENSVVUG00000009613)	ZNF526 (ENSVVUG00000009982)	DEDD2 (ENSVVUG00000009984)	POU2F2 (ENSVVUG00000010002)	ZNF574 (ENSVVUG00000010354)	GRIK5 (ENSVVUG00000010369)	ATP1A3 (ENSVVUG00000010594)	RABAC1 (ENSVVUG00000010606)	ENSVVUG00000010610	ARHGEF1 (ENSVVUG00000010615)	CD79A (ENSVVUG00000010632)	RPS19 (ENSVVUG00000010652)	DMRTC2 (ENSVVUG00000010656)
Canidae	ANCESTRAL SPECIES	18	ENSGT00390000003298	ENSGT00390000012891	ENSGT00390000007688	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00950000183036.a.a	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00390000017398	ENSGT00490000043442	ENSGT00940000157892	ENSGT00960000186747	ENSGT00940000155151.b	ENSGT00390000017201	ENSGT00940000162448	ENSGT00950000183199.a.b.p ##22	ENSGT00530000063497.b	ENSGT00940000161548	ENSGT00940000154682.C	ENSGT00940000160416	ENSGT00940000157555	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.b	ENSGT00940000164661	ENSGT00940000162684
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00390000003298	ENSGT00390000012891	ENSGT00390000007688	ENSGT01050000244941.B.d	ENSGT00950000183036.a.b	ENSGT00950000183036.a.a	ENSGT00940000156924	ENSGT01030000234635.a.a.a.a	ENSGT00390000017398	ENSGT00490000043442	ENSGT00940000157892	ENSGT00960000186747	ENSGT00940000155151.b	ENSGT00390000017201	ENSGT00940000162448	ENSGT00950000183199.a.b.p ##22	ENSGT00530000063497.b	ENSGT00940000161548	ENSGT00940000154682.C	ENSGT00940000160416	ENSGT00940000157555	ENSGT00940000155667	ENSGT00940000154284.a	ENSGT00530000063408.B	ENSGT00940000157730	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000155827	ENSGT00940000156840.b	ENSGT00940000164661	ENSGT00940000162684
Dingo	MODERN SPECIES	172	SSX2IP (ENSCAFG00020014235)	ENSCAFG00020014228	LPAR3 (ENSCAFG00020014218)	MCOLN2 (ENSCAFG00020014195)	MCOLN3 (ENSCAFG00020014182)	DNAI3 (ENSCAFG00020014165)	SYDE2 (ENSCAFG00020014128)	C1orf52 (ENSCAFG00020014126)	BCL10 (ENSCAFG00020014121)	DDAH1 (ENSCAFG00020014115)	ENSCAFG00020014109	CCN1 (ENSCAFG00020014107)	ZNHIT6 (ENSCAFG00020014100)	ENSCAFG00020014087	ENSCAFG00020014085	ENSCAFG00020014075 ##22	ODF2L (ENSCAFG00020013982)	CLCA2 (ENSCAFG00020013957)	CLCA1 (ENSCAFG00020013898)	CLCA4 (ENSCAFG00020013813)	ENSCAFG00020013760	SH3GLB1 (ENSCAFG00020013756)	ENSCAFG00020013754	SELENOF (ENSCAFG00020013750)	HS2ST1 (ENSCAFG00020013749)	LMO4 (ENSCAFG00020013723)	ENSCAFG00020013716	ENSCAFG00020013695	ENSCAFG00020013692	ENSCAFG00020013691	GTF2B (ENSCAFG00020013683)
Dog	MODERN SPECIES	34	MCOLN2 (ENSCAFG00845001382)	MCOLN3 (ENSCAFG00845001310)	WDR63 (ENSCAFG00845001218)	SYDE2 (ENSCAFG00845001161)	C6H1orf52 (ENSCAFG00845001130)	BCL10 (ENSCAFG00845001105)	DDAH1 (ENSCAFG00845001064)	ENSCAFG00845001033	ENSCAFG00845024791	CCN1 (ENSCAFG00845024708)	ZNHIT6 (ENSCAFG00845024485)	ENSCAFG00845024424	ENSCAFG00845024397	COL24A1 (ENSCAFG00845022035)	ENSCAFG00845021690	ENSCAFG00845021655 ##22	ODF2L (ENSCAFG00845021153)	CLCA2 (ENSCAFG00845021008)	CLCA1 (ENSCAFG00845020906)	CLCA4 (ENSCAFG00845020831)	ENSCAFG00845020134	SH3GLB1 (ENSCAFG00845019543)	HS2ST1 (ENSCAFG00845019416)	LMO4 (ENSCAFG00845019328)	PKN2 (ENSCAFG00845018917)	ENSCAFG00845018822	ENSCAFG00845018785	GTF2B (ENSCAFG00845018664)	KYAT3 (ENSCAFG00845018455)	GBP1 (ENSCAFG00845018127)	ENSCAFG00845017796
Red fox	MODERN SPECIES	50	CTBS (ENSVVUG00000030082)	SSX2IP (ENSVVUG00000030083)	LPAR3 (ENSVVUG00000030085)	MCOLN2 (ENSVVUG00000030088)	MCOLN3 (ENSVVUG00000030089)	WDR63 (ENSVVUG00000030090)	SYDE2 (ENSVVUG00000030093)	C1orf52 (ENSVVUG00000030094)	BCL10 (ENSVVUG00000030096)	DDAH1 (ENSVVUG00000030097)	ENSVVUG00000030098	CYR61 (ENSVVUG00000030100)	ZNHIT6 (ENSVVUG00000030102)	ENSVVUG00000030103	ENSVVUG00000030110	ENSVVUG00000030118 ##22	ODF2L (ENSVVUG00000030120)	CLCA2 (ENSVVUG00000030122)	CLCA1 (ENSVVUG00000030143)	CLCA4 (ENSVVUG00000030149)	ENSVVUG00000030152	SH3GLB1 (ENSVVUG00000030155)	SELENOF (ENSVVUG00000030159)	HS2ST1 (ENSVVUG00000030160)	LMO4 (ENSVVUG00000030166)	PKN2 (ENSVVUG00000030190)	ENSVVUG00000030193	GTF2B (ENSVVUG00000030194)	ENSVVUG00000030195	KYAT3 (ENSVVUG00000030196)	GBP1 (ENSVVUG00000030199)
Caniformia_b	ANCESTRAL SPECIES	2	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.a.b.b.a	ENSGT00390000002861	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Ursidae	ANCESTRAL SPECIES	30									ENSGT01100000263479.D.a.b.a.b.b.a.a.a.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549.d	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Ursus	ANCESTRAL SPECIES	176									ENSGT01100000263479.D.a.b.a.b.b.a.a.a.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549.d	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904	ENSGT00530000063351.a.b
American black bear	MODERN SPECIES	268															PRR19 (ENSUAMG00000010735)	PAFAH1B3 (ENSUAMG00000010737) ##22	CIC (ENSUAMG00000010743)
Polar bear	MODERN SPECIES	344											ENSUMAG00000001896	ENSUMAG00000001923	CXCL17 (ENSUMAG00000001950)	LIPE (ENSUMAG00000001964)	PRR19 (ENSUMAG00000002248)	PAFAH1B3 (ENSUMAG00000002255) ##22	CIC (ENSUMAG00000002268)	ENSUMAG00000002396	GSK3A (ENSUMAG00000002409)	DEDD2 (ENSUMAG00000002619)	POU2F2 (ENSUMAG00000002647)	ZNF574 (ENSUMAG00000002662)	GRIK5 (ENSUMAG00000002670)	ENSUMAG00000002742	ENSUMAG00000002749	ENSUMAG00000002753	ARHGEF1 (ENSUMAG00000002856)	CD79A (ENSUMAG00000003839)	RPS19 (ENSUMAG00000003843)	DMRTC2 (ENSUMAG00000003849)	LYPD4 (ENSUMAG00000003866)
Giant Panda	MODERN SPECIES	3	ZNF112 (ENSAMEG00000012925)	ZNF235 (ENSAMEG00000027056)	ZNF233 (ENSAMEG00000006122)	ENSAMEG00000006129	ENSAMEG00000026533	ENSAMEG00000027844	ENSAMEG00000006137	ENSAMEG00000006141	ENSAMEG00000026212	ENSAMEG00000005003	LIPE (ENSAMEG00000004975)	CNFN (ENSAMEG00000004972)	MEGF8 (ENSAMEG00000028618)	TMEM145 (ENSAMEG00000004959)	PRR19 (ENSAMEG00000004957)	PAFAH1B3 (ENSAMEG00000031198) ##22	CIC (ENSAMEG00000029555)	ERF (ENSAMEG00000004880)	GSK3A (ENSAMEG00000026734)	ZNF526 (ENSAMEG00000025331)	DEDD2 (ENSAMEG00000026014)	POU2F2 (ENSAMEG00000004811)	ZNF574 (ENSAMEG00000020255)	GRIK5 (ENSAMEG00000004677)	ATP1A3 (ENSAMEG00000004573)	RABAC1 (ENSAMEG00000029836)	ERFL (ENSAMEG00000004554)	ARHGEF1 (ENSAMEG00000004495)	CD79A (ENSAMEG00000004479)	RPS19 (ENSAMEG00000004456)	DMRTC2 (ENSAMEG00000004439)
Mustelinae	ANCESTRAL SPECIES	7													ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Ferret	MODERN SPECIES	291													MEGF8 (ENSMPUG00000007646)	TMEM145 (ENSMPUG00000007588)	PRR19 (ENSMPUG00000007582)	PAFAH1B3 (ENSMPUG00000007574) ##22	CIC (ENSMPUG00000007557)	ERF (ENSMPUG00000007551)	GSK3A (ENSMPUG00000007543)	ZNF526 (ENSMPUG00000019384)	DEDD2 (ENSMPUG00000007534)	POU2F2 (ENSMPUG00000007374)	ENSMPUG00000019382	ZNF574 (ENSMPUG00000007369)	GRIK5 (ENSMPUG00000007345)	ATP1A3 (ENSMPUG00000007324)	RABAC1 (ENSMPUG00000007273)	ERFL (ENSMPUG00000007268)	ARHGEF1 (ENSMPUG00000007235)	CD79A (ENSMPUG00000007182)	RPS19 (ENSMPUG00000007164)
American mink	MODERN SPECIES	385													ENSNVIG00000024583	TMEM145 (ENSNVIG00000024588)	PRR19 (ENSNVIG00000024589)	ENSNVIG00000024590 ##22	CIC (ENSNVIG00000024591)	ERF (ENSNVIG00000024592)	GSK3A (ENSNVIG00000024594)	ZNF526 (ENSNVIG00000024596)	DEDD2 (ENSNVIG00000024597)	POU2F2 (ENSNVIG00000024599)	ZNF574 (ENSNVIG00000024603)	GRIK5 (ENSNVIG00000024604)	ATP1A3 (ENSNVIG00000024605)	RABAC1 (ENSNVIG00000024607)	ERFL (ENSNVIG00000024608)	ARHGEF1 (ENSNVIG00000024617)	CD79A (ENSNVIG00000024643)	RPS19 (ENSNVIG00000024644)	DMRTC2 (ENSNVIG00000024645)
Laurasiatheria_c	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00730000111056	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Equus	ANCESTRAL SPECIES	1	ENSGT01100000263479.D.a.b.b.f.a	ENSGT00390000002861.e.b	ENSGT01100000263479.D.a.b.b.e.a.a.a	ENSGT01100000263479.D.a.b.b.e.a.b.a	ENSGT00390000002861.f	ENSGT01100000263479.D.a.b.b.e.a.b.b	ENSGT01030000237327	ENSGT00730000111056	ENSGT00980000198994	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Donkey	MODERN SPECIES	18	ENSEASG00005025926	ENSEASG00005006286	ENSEASG00005006309	ENSEASG00005006283	ENSEASG00005038772	ENSEASG00005006278	ENSEASG00005006266	ENSEASG00005032034	LIPE (ENSEASG00005006261)	ENSEASG00005006264	CNFN (ENSEASG00005032022)	MEGF8 (ENSEASG00005006253)	TMEM145 (ENSEASG00005006250)	PRR19 (ENSEASG00005006249)	ENSEASG00005006247	PAFAH1B3 (ENSEASG00005017155) ##22	CIC (ENSEASG00005006234)	ERF (ENSEASG00005006230)	ZNF526 (ENSEASG00005006227)	GSK3A (ENSEASG00005006229)	DEDD2 (ENSEASG00005006226)	POU2F2 (ENSEASG00005006218)	ZNF574 (ENSEASG00005031171)	GRIK5 (ENSEASG00005006176)	ATP1A3 (ENSEASG00005004546)	RABAC1 (ENSEASG00005004293)	ERFL (ENSEASG00005004285)	ARHGEF1 (ENSEASG00005003557)	ENSEASG00005025039	ENSEASG00005003466	DMRTC2 (ENSEASG00005003463)
Chiroptera	ANCESTRAL SPECIES	16	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00940000164580	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Megabat	MODERN SPECIES	1696														MEGF8 (ENSPVAG00000016809)	TMEM145 (ENSPVAG00000016808)	PAFAH1B3 (ENSPVAG00000016807) ##22	CIC (ENSPVAG00000016806)	ERF (ENSPVAG00000016805)	GSK3A (ENSPVAG00000016802)	DEDD2 (ENSPVAG00000016800)
Microchiroptera	ANCESTRAL SPECIES	18	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00940000164580	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Greater horseshoe bat	MODERN SPECIES	6	ETHE1 (ENSRFEG00010019545)	PHLDB3 (ENSRFEG00010019485)	LYPD3 (ENSRFEG00010019417)	ENSRFEG00010019388	TEX101 (ENSRFEG00010019311)	ENSRFEG00010019285	ENSRFEG00010018708	ENSRFEG00010018459	ENSRFEG00010018437	CXCL17 (ENSRFEG00010018405)	LIPE (ENSRFEG00010018364)	CNFN (ENSRFEG00010018318)	MEGF8 (ENSRFEG00010018262)	TMEM145 (ENSRFEG00010018204)	PRR19 (ENSRFEG00010018186)	PAFAH1B3 (ENSRFEG00010018154) ##22	CIC (ENSRFEG00010017983)	ERF (ENSRFEG00010017899)	GSK3A (ENSRFEG00010017776)	ZNF526 (ENSRFEG00010017756)	DEDD2 (ENSRFEG00010017687)	POU2F2 (ENSRFEG00010017530)	ZNF574 (ENSRFEG00010017506)	GRIK5 (ENSRFEG00010017406)	ATP1A3 (ENSRFEG00010017150)	RABAC1 (ENSRFEG00010017020)	ERFL (ENSRFEG00010016938)	ARHGEF1 (ENSRFEG00010016400)	CD79A (ENSRFEG00010016343)	ENSRFEG00010016186	DMRTC2 (ENSRFEG00010016064)
Microbat	MODERN SPECIES	1427						ENSMLUG00000028603	ENSMLUG00000024374	ENSMLUG00000022800	CXCL17 (ENSMLUG00000016757)	ENSMLUG00000008187	LIPE (ENSMLUG00000016739)	CNFN (ENSMLUG00000016735)	MEGF8 (ENSMLUG00000016706)	TMEM145 (ENSMLUG00000016682)	PRR19 (ENSMLUG00000016675)	PAFAH1B3 (ENSMLUG00000016667) ##22	CIC (ENSMLUG00000016650)	ERF (ENSMLUG00000016639)	GSK3A (ENSMLUG00000016622)	ZNF526 (ENSMLUG00000016619)	ENSMLUG00000005352	DEDD2 (ENSMLUG00000016612)	POU2F2 (ENSMLUG00000014682)	ZNF574 (ENSMLUG00000014677)	GRIK5 (ENSMLUG00000014661)	ATP1A3 (ENSMLUG00000014647)	RABAC1 (ENSMLUG00000022885)
Artiodactyla	ANCESTRAL SPECIES	5	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00940000171483	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Suina	ANCESTRAL SPECIES	2	ENSGT00390000015495	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.a.c.a.b.a	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Chacoan peccary	MODERN SPECIES	25	CCDC97 (ENSCWAG00000003650)	TGFB1 (ENSCWAG00000003658)	B9D2 (ENSCWAG00000003676)	TMEM91 (ENSCWAG00000003707)	EXOSC5 (ENSCWAG00000003779)	BCKDHA (ENSCWAG00000003819)	B3GNT8 (ENSCWAG00000003851)	DMAC2 (ENSCWAG00000003874)	ERICH4 (ENSCWAG00000003948)	ENSCWAG00000003982	LIPE (ENSCWAG00000004054)	CNFN (ENSCWAG00000004139)	MEGF8 (ENSCWAG00000004189)	TMEM145 (ENSCWAG00000004400)	PRR19 (ENSCWAG00000004472)	PAFAH1B3 (ENSCWAG00000004497) ##22	CIC (ENSCWAG00000004546)
Pig	MODERN SPECIES	14	HNRNPUL1 (ENSSSCG00000030049)	CCDC97 (ENSSSCG00000003016)	TGFB1 (ENSSSCG00000003017)	B9D2 (ENSSSCG00000003013)	TMEM91 (ENSSSCG00000057647)	EXOSC5 (ENSSSCG00000003015)	BCKDHA (ENSSSCG00000028794)	B3GNT8 (ENSSSCG00000032536)	DMAC2 (ENSSSCG00000032711)	ERICH4 (ENSSSCG00000040022)	ENSSSCG00000020837	ENSSSCG00000033133	LIPE (ENSSSCG00000003018)	CNFN (ENSSSCG00000027022)	ENSSSCG00000059920	PAFAH1B3 (ENSSSCG00000029070) ##22	TMEM145 (ENSSSCG00000003022)	PRR19 (ENSSSCG00000003024)	CIC (ENSSSCG00000003030)	ERF (ENSSSCG00000032154)	GSK3A (ENSSSCG00000003035)	ZNF526 (ENSSSCG00000028054)	DEDD2 (ENSSSCG00000030182)	POU2F2 (ENSSSCG00000037132)	ZNF574 (ENSSSCG00000003037)	GRIK5 (ENSSSCG00000003038)	ATP1A3 (ENSSSCG00000003045)	ENSSSCG00000049078	RABAC1 (ENSSSCG00000003046)	ERFL (ENSSSCG00000003049)	ARHGEF1 (ENSSSCG00000003040)
Artiodactyla_a	ANCESTRAL SPECIES	4	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Camelidae	ANCESTRAL SPECIES	15	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00390000002861	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Arabian camel	MODERN SPECIES	35	EXOSC5 (ENSCDRG00005016327)	BCKDHA (ENSCDRG00005016437)	B3GNT8 (ENSCDRG00005016531)	DMAC2 (ENSCDRG00005016562)	ERICH4 (ENSCDRG00005016660)	ENSCDRG00005016719	ENSCDRG00005017139	ENSCDRG00005017153	ENSCDRG00005017189	LIPE (ENSCDRG00005017218)	ENSCDRG00005017296	CNFN (ENSCDRG00005017339)	ENSCDRG00005017359	TMEM145 (ENSCDRG00005017397)	PRR19 (ENSCDRG00005017429)	PAFAH1B3 (ENSCDRG00005017451) ##22	CIC (ENSCDRG00005017516)	ERF (ENSCDRG00005017683)	GSK3A (ENSCDRG00005017728)	ZNF526 (ENSCDRG00005017810)	DEDD2 (ENSCDRG00005017828)	POU2F2 (ENSCDRG00005017912)	ZNF574 (ENSCDRG00005018127)	GRIK5 (ENSCDRG00005018143)	ATP1A3 (ENSCDRG00005018181)	RABAC1 (ENSCDRG00005018418)	ERFL (ENSCDRG00005018480)	ARHGEF1 (ENSCDRG00005018539)	CD79A (ENSCDRG00005018664)	ENSCDRG00005018687	DMRTC2 (ENSCDRG00005018727)
Artiodactyla_b	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT00940000171483	ENSGT00730000111056	ENSGT00990000204044	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Cetacea	ANCESTRAL SPECIES	6	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Odontoceti	ANCESTRAL SPECIES	6	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Odontoceti_a	ANCESTRAL SPECIES	7	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00940000171483	ENSGT00990000204044	ENSGT00530000063351.a.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Odontoceti_b	ANCESTRAL SPECIES	5	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Monodontidae	ANCESTRAL SPECIES	3	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Narwhal	MODERN SPECIES	296	B9D2 (ENSMMNG00015003344)	TMEM91 (ENSMMNG00015003373)	EXOSC5 (ENSMMNG00015003426)	BCKDHA (ENSMMNG00015003452)	B3GNT8 (ENSMMNG00015003478)	DMAC2 (ENSMMNG00015003502)	ERICH4 (ENSMMNG00015003517)	ENSMMNG00015003530	ENSMMNG00015003542	LIPE (ENSMMNG00015003560)	ENSMMNG00015003571	CNFN (ENSMMNG00015003587)	MEGF8 (ENSMMNG00015003617)	TMEM145 (ENSMMNG00015003703)	PRR19 (ENSMMNG00015003832)	PAFAH1B3 (ENSMMNG00015003845) ##22	CIC (ENSMMNG00015003888)	ERF (ENSMMNG00015003962)	GSK3A (ENSMMNG00015003974)	ZNF526 (ENSMMNG00015003997)	DEDD2 (ENSMMNG00015004007)	ENSMMNG00015004017	POU2F2 (ENSMMNG00015004037)	ZNF574 (ENSMMNG00015004072)	GRIK5 (ENSMMNG00015004091)	ATP1A3 (ENSMMNG00015004136)	RABAC1 (ENSMMNG00015004198)	ERFL (ENSMMNG00015004212)	ARHGEF1 (ENSMMNG00015004283)	CD79A (ENSMMNG00015004388)	ENSMMNG00015004405
Beluga whale	MODERN SPECIES	14	CCDC97 (ENSDLEG00000004253)	TGFB1 (ENSDLEG00000004251)	B9D2 (ENSDLEG00000004248)	EXOSC5 (ENSDLEG00000004244)	BCKDHA (ENSDLEG00000004236)	B3GNT8 (ENSDLEG00000004233)	DMAC2 (ENSDLEG00000004229)	ERICH4 (ENSDLEG00000004226)	ENSDLEG00000004222	ENSDLEG00000004219	LIPE (ENSDLEG00000002330)	CNFN (ENSDLEG00000002318)	MEGF8 (ENSDLEG00000002276)	TMEM145 (ENSDLEG00000002254)	PRR19 (ENSDLEG00000002248)	PAFAH1B3 (ENSDLEG00000002240) ##22	CIC (ENSDLEG00000002223)	ERF (ENSDLEG00000002213)	GSK3A (ENSDLEG00000002202)	ZNF526 (ENSDLEG00000002191)	DEDD2 (ENSDLEG00000002184)	ENSDLEG00000002177	POU2F2 (ENSDLEG00000002157)	ZNF574 (ENSDLEG00000002144)	GRIK5 (ENSDLEG00000002123)	ATP1A3 (ENSDLEG00000002099)	RABAC1 (ENSDLEG00000002078)	ENSDLEG00000002063	ARHGEF1 (ENSDLEG00000002004)	CD79A (ENSDLEG00000001982)	RPS19 (ENSDLEG00000001955)
Vaquita	MODERN SPECIES	10	TGFB1 (ENSPSNG00000017763)	B9D2 (ENSPSNG00000017733)	TMEM91 (ENSPSNG00000017581)	EXOSC5 (ENSPSNG00000017550)	BCKDHA (ENSPSNG00000017396)	ENSPSNG00000017313	ERICH4 (ENSPSNG00000017237)	ENSPSNG00000017162	ENSPSNG00000017125	ENSPSNG00000017088	ENSPSNG00000017051	LIPE (ENSPSNG00000017024)	CNFN (ENSPSNG00000016978)	ENSPSNG00000016933	TMEM145 (ENSPSNG00000016852)	PAFAH1B3 (ENSPSNG00000016663) ##22	CIC (ENSPSNG00000016537)	ERF (ENSPSNG00000016478)	GSK3A (ENSPSNG00000016329)	ZNF526 (ENSPSNG00000016306)	DEDD2 (ENSPSNG00000016228)	ENSPSNG00000016173	POU2F2 (ENSPSNG00000014981)	ZNF574 (ENSPSNG00000014863)	GRIK5 (ENSPSNG00000014767)	ATP1A3 (ENSPSNG00000013902)	ENSPSNG00000013664	ARHGEF1 (ENSPSNG00000013433)	CD79A (ENSPSNG00000013274)	ENSPSNG00000013157	DMRTC2 (ENSPSNG00000013013)
Dolphin	MODERN SPECIES	2765									ENSTTRG00000013923	CXCL17 (ENSTTRG00000013922)	LIPE (ENSTTRG00000013921)	CNFN (ENSTTRG00000013920)	MEGF8 (ENSTTRG00000013898)	TMEM145 (ENSTTRG00000013894)	PRR19 (ENSTTRG00000013893)	PAFAH1B3 (ENSTTRG00000013887) ##22	ENSTTRG00000013873
Sperm whale	MODERN SPECIES	8	ENSPCTG00005006942	CYP2S1 (ENSPCTG00005006912)	AXL (ENSPCTG00005006693)	ENSPCTG00005006668	ENSPCTG00005006654	B3GNT8 (ENSPCTG00005006644)	BCKDHA (ENSPCTG00005006616)	ENSPCTG00005006591	ENSPCTG00005006569	ENSPCTG00005006540	LIPE (ENSPCTG00005006526)	ENSPCTG00005006495	ENSPCTG00005006481	TMEM145 (ENSPCTG00005006442)	PRR19 (ENSPCTG00005006423)	PAFAH1B3 (ENSPCTG00005006406) ##22	CIC (ENSPCTG00005006286)	ERF (ENSPCTG00005006251)	GSK3A (ENSPCTG00005006203)	ZNF526 (ENSPCTG00005006185)	DEDD2 (ENSPCTG00005006152)	POU2F2 (ENSPCTG00005005510)	ERFL (ENSPCTG00005005455)	ARHGEF1 (ENSPCTG00005005237)	CD79A (ENSPCTG00005005160)	ENSPCTG00005005137	DMRTC2 (ENSPCTG00005005088)	LYPD4 (ENSPCTG00005005055)	CXCL17 (ENSPCTG00005005031)	ENSPCTG00005005018	ENSPCTG00005004989
Blue whale	MODERN SPECIES	10	B9D2 (ENSBMSG00010017476)	TMEM91 (ENSBMSG00010017354)	EXOSC5 (ENSBMSG00010017251)	BCKDHA (ENSBMSG00010017121)	B3GNT8 (ENSBMSG00010017104)	DMAC2 (ENSBMSG00010016906)	ERICH4 (ENSBMSG00010016823)	ENSBMSG00010016795	ENSBMSG00010016729	ENSBMSG00010016682	LIPE (ENSBMSG00010016630)	CNFN (ENSBMSG00010016586)	ENSBMSG00010016564	TMEM145 (ENSBMSG00010016521)	PRR19 (ENSBMSG00010016489)	PAFAH1B3 (ENSBMSG00010016458) ##22	CIC (ENSBMSG00010016308)	ERF (ENSBMSG00010016255)	GSK3A (ENSBMSG00010016150)	ZNF526 (ENSBMSG00010016129)	DEDD2 (ENSBMSG00010016093)	POU2F2 (ENSBMSG00010014278)	ZNF574 (ENSBMSG00010014041)	GRIK5 (ENSBMSG00010020158)	ATP1A3 (ENSBMSG00010020043)	RABAC1 (ENSBMSG00010020001)	ERFL (ENSBMSG00010019977)	ARHGEF1 (ENSBMSG00010019827)	CD79A (ENSBMSG00010019729)	ENSBMSG00010019694	DMRTC2 (ENSBMSG00010019663)
Pecora	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Yarkand deer	MODERN SPECIES	27	AXL (ENSCHYG00000027177)	HNRNPUL1 (ENSCHYG00000027178)	CCDC97 (ENSCHYG00000027179)	TGFB1 (ENSCHYG00000027180)	B9D2 (ENSCHYG00000027181)	BCKDHA (ENSCHYG00000027182)	ENSCHYG00000027183	B3GNT8 (ENSCHYG00000027184)	DMAC2 (ENSCHYG00000027185)	ERICH4 (ENSCHYG00000000043)	LIPE (ENSCHYG00000000071)	CNFN (ENSCHYG00000000115)	MEGF8 (ENSCHYG00000000158)	TMEM145 (ENSCHYG00000000283)	PRR19 (ENSCHYG00000000321)	PAFAH1B3 (ENSCHYG00000000329) ##22	CIC (ENSCHYG00000000355)	ERF (ENSCHYG00000000404)	GSK3A (ENSCHYG00000000417)	ZNF526 (ENSCHYG00000000435)	DEDD2 (ENSCHYG00000000451)	ENSCHYG00000000500	ZNF574 (ENSCHYG00000000579)	GRIK5 (ENSCHYG00000000596)	ATP1A3 (ENSCHYG00000000627)	ENSCHYG00000000702	ERFL (ENSCHYG00000000737)	ARHGEF1 (ENSCHYG00000000815)	CD79A (ENSCHYG00000001084)	ENSCHYG00000001110	DMRTC2 (ENSCHYG00000001132)
Percora_a	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Siberian musk deer	MODERN SPECIES	124	CCDC97 (ENSMMSG00000020594)	TGFB1 (ENSMMSG00000020561)	B9D2 (ENSMMSG00000020537)	TMEM91 (ENSMMSG00000020489)	EXOSC5 (ENSMMSG00000020437)	BCKDHA (ENSMMSG00000020382)	B3GNT8 (ENSMMSG00000020371)	DMAC2 (ENSMMSG00000020294)	ERICH4 (ENSMMSG00000020233)	ENSMMSG00000020209	LIPE (ENSMMSG00000020179)	CNFN (ENSMMSG00000020148)	ENSMMSG00000020131	TMEM145 (ENSMMSG00000020115)	PRR19 (ENSMMSG00000020102)	PAFAH1B3 (ENSMMSG00000020080) ##22	CIC (ENSMMSG00000020009)	ERF (ENSMMSG00000019974)	GSK3A (ENSMMSG00000019904)	ZNF526 (ENSMMSG00000019889)	DEDD2 (ENSMMSG00000019867)	POU2F2 (ENSMMSG00000018771)	ZNF574 (ENSMMSG00000018699)	GRIK5 (ENSMMSG00000018615)	ATP1A3 (ENSMMSG00000018343)	RABAC1 (ENSMMSG00000018284)	ERFL (ENSMMSG00000018244)	ARHGEF1 (ENSMMSG00000017749)	CD79A (ENSMMSG00000017672)	RPS19 (ENSMMSG00000017625)	DMRTC2 (ENSMMSG00000017583)
Bovidae	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Caprinae	ANCESTRAL SPECIES	4	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00940000157162.c.b.j	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00910000148701	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Goat	MODERN SPECIES	9	B9D2 (ENSCHIG00000024038)	TMEM91 (ENSCHIG00000013235)	EXOSC5 (ENSCHIG00000026498)	BCKDHA (ENSCHIG00000025690)	B3GNT8 (ENSCHIG00000011490)	DMAC2 (ENSCHIG00000022889)	CYP2B6 (ENSCHIG00000021270)	ERICH4 (ENSCHIG00000015175)	ENSCHIG00000007384	LIPE (ENSCHIG00000020815)	CNFN (ENSCHIG00000014477)	MEGF8 (ENSCHIG00000015019)	TMEM145 (ENSCHIG00000003376)	PRR19 (ENSCHIG00000022284)	ENSCHIG00000007871	PAFAH1B3 (ENSCHIG00000019643) ##22	CIC (ENSCHIG00000015534)	ERF (ENSCHIG00000019624)	GSK3A (ENSCHIG00000027180)	ZNF526 (ENSCHIG00000018756)	DEDD2 (ENSCHIG00000020747)	POU2F2 (ENSCHIG00000025522)	ZNF574 (ENSCHIG00000009605)	GRIK5 (ENSCHIG00000025382)	ATP1A3 (ENSCHIG00000020539)	RABAC1 (ENSCHIG00000023419)	ENSCHIG00000008355	ENSCHIG00000027270	ARHGEF1 (ENSCHIG00000022244)	CD79A (ENSCHIG00000013630)	ENSCHIG00000025321
Rambouillet Sheep	MODERN SPECIES	5	CCDC97 (ENSOARG00020017796)	TGFB1 (ENSOARG00020017842)	B9D2 (ENSOARG00020017895)	TMEM91 (ENSOARG00020017943)	EXOSC5 (ENSOARG00020018062)	BCKDHA (ENSOARG00020018183)	B3GNT8 (ENSOARG00020018420)	DMAC2 (ENSOARG00020018442)	ENSOARG00020018539	ENSOARG00020019378	LIPE (ENSOARG00020019526)	CNFN (ENSOARG00020019872)	MEGF8 (ENSOARG00020019929)	TMEM145 (ENSOARG00020020232)	PRR19 (ENSOARG00020020341)	PAFAH1B3 (ENSOARG00020020383) ##22	CIC (ENSOARG00020020421)	ERF (ENSOARG00020020689)	GSK3A (ENSOARG00020020722)	ZNF526 (ENSOARG00020020823)	DEDD2 (ENSOARG00020020833)	POU2F2 (ENSOARG00020020916)	ZNF574 (ENSOARG00020021082)	GRIK5 (ENSOARG00020021115)	ATP1A3 (ENSOARG00020021250)	RABAC1 (ENSOARG00020021478)	ERFL (ENSOARG00020021537)	ARHGEF1 (ENSOARG00020021606)	CD79A (ENSOARG00020022164)	RPS19 (ENSOARG00020022219)	DMRTC2 (ENSOARG00020022282)
Bovinae	ANCESTRAL SPECIES	3	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Bos	ANCESTRAL SPECIES	4	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Bos_a	ANCESTRAL SPECIES	16	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01010000223350	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Domestic yak	MODERN SPECIES	12	B9D2 (ENSBGRG00000019369)	TMEM91 (ENSBGRG00000019245)	EXOSC5 (ENSBGRG00000019201)	ENSBGRG00000019164	BCKDHA (ENSBGRG00000019059)	B3GNT8 (ENSBGRG00000019050)	DMAC2 (ENSBGRG00000018867)	ERICH4 (ENSBGRG00000018840)	ENSBGRG00000018623	ENSBGRG00000018545	LIPE (ENSBGRG00000018426)	CNFN (ENSBGRG00000018386)	ENSBGRG00000018363	TMEM145 (ENSBGRG00000018156)	PRR19 (ENSBGRG00000018108)	PAFAH1B3 (ENSBGRG00000018054) ##22	CIC (ENSBGRG00000017444)	ENSBGRG00000017376	GSK3A (ENSBGRG00000017191)	ZNF526 (ENSBGRG00000017155)	DEDD2 (ENSBGRG00000017057)	ENSBGRG00000017018	ENSBGRG00000016760	ZNF574 (ENSBGRG00000016716)	GRIK5 (ENSBGRG00000016203)	ATP1A3 (ENSBGRG00000015768)	RABAC1 (ENSBGRG00000015658)	ERFL (ENSBGRG00000015596)	ARHGEF1 (ENSBGRG00000014764)	CD79A (ENSBGRG00000014607)	ENSBGRG00000014536
Wild yak	MODERN SPECIES	2329													MEGF8 (ENSBMUG00000007653)	TMEM145 (ENSBMUG00000007684)	PRR19 (ENSBMUG00000007690)	PAFAH1B3 (ENSBMUG00000007703) ##22	CIC (ENSBMUG00000007723)	ERF (ENSBMUG00000007734)	GSK3A (ENSBMUG00000007760)	ZNF526 (ENSBMUG00000007775)	DEDD2 (ENSBMUG00000007781)	POU2F2 (ENSBMUG00000007839)	ZNF574 (ENSBMUG00000007896)	GRIK5 (ENSBMUG00000007983)	ATP1A3 (ENSBMUG00000008087)	RABAC1 (ENSBMUG00000008116)	ERFL (ENSBMUG00000008138)	ARHGEF1 (ENSBMUG00000008227)	CD79A (ENSBMUG00000008237)	RPS19 (ENSBMUG00000008261)	DMRTC2 (ENSBMUG00000008273)
Bos_b	ANCESTRAL SPECIES		ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.b.h.a.b.a	ENSGT00940000171483	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.r	ENSGT00940000161904
Hybrid Bos Indicus	MODERN SPECIES	9	B9D2 (ENSBIXG00005017466)	EXOSC5 (ENSBIXG00005017485)	B3GNT8 (ENSBIXG00005017509)	BCKDHA (ENSBIXG00005017645)	DMAC2 (ENSBIXG00005017716)	ERICH4 (ENSBIXG00005017740)	ENSBIXG00005017765	ENSBIXG00005002888	ENSBIXG00005017862	ENSBIXG00005017878	LIPE (ENSBIXG00005017907)	CNFN (ENSBIXG00005017936)	MEGF8 (ENSBIXG00005002929)	TMEM145 (ENSBIXG00005018074)	PRR19 (ENSBIXG00005018080)	ENSBIXG00005018104 ##22	CIC (ENSBIXG00005018122)	ERF (ENSBIXG00005018139)	GSK3A (ENSBIXG00005018197)	ZNF526 (ENSBIXG00005018214)	DEDD2 (ENSBIXG00005018238)	POU2F2 (ENSBIXG00005018313)	ZNF574 (ENSBIXG00005018351)	GRIK5 (ENSBIXG00005018372)	ATP1A3 (ENSBIXG00005018430)	RABAC1 (ENSBIXG00005006141)	ERFL (ENSBIXG00005018479)	ARHGEF1 (ENSBIXG00005018710)	CD79A (ENSBIXG00005018747)	ENSBIXG00005018880	DMRTC2 (ENSBIXG00005003077)
Cow	MODERN SPECIES	9	B9D2 (ENSBTAG00000023452)	TMEM91 (ENSBTAG00000038711)	EXOSC5 (ENSBTAG00000016034)	BCKDHA (ENSBTAG00000016037)	B3GNT8 (ENSBTAG00000016041)	DMAC2 (ENSBTAG00000009449)	ERICH4 (ENSBTAG00000047423)	ENSBTAG00000050227	CEACAM1 (ENSBTAG00000005615)	ENSBTAG00000052955	LIPE (ENSBTAG00000038321)	CNFN (ENSBTAG00000031004)	MEGF8 (ENSBTAG00000031001)	TMEM145 (ENSBTAG00000039015)	PRR19 (ENSBTAG00000013283)	PAFAH1B3 (ENSBTAG00000019787) ##22	CIC (ENSBTAG00000019785)	ERF (ENSBTAG00000000332)	GSK3A (ENSBTAG00000020756)	ZNF526 (ENSBTAG00000020754)	DEDD2 (ENSBTAG00000005761)	POU2F2 (ENSBTAG00000008556)	ZNF574 (ENSBTAG00000021789)	ENSBTAG00000054584	GRIK5 (ENSBTAG00000011723)	ATP1A3 (ENSBTAG00000018635)	RABAC1 (ENSBTAG00000018633)	ENSBTAG00000053222	ARHGEF1 (ENSBTAG00000018912)	CD79A (ENSBTAG00000001882)	RPS19 (ENSBTAG00000011963)
American bison	DUPLICATION
American bison	MODERN SPECIES	1795									ENSBBBG00000021857	ENSBBBG00000021731	LIPE (ENSBBBG00000021720)	ENSBBBG00000021706	MEGF8 (ENSBBBG00000021694)	TMEM145 (ENSBBBG00000021613)	PRR19 (ENSBBBG00000021600)	ENSBBBG00000021595 ##22	ENSBBBG00000021579
American bison	MODERN SPECIES	11																ENSBBBG00000006727 ##22
Euarchontoglires	ANCESTRAL SPECIES	5	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.d	ENSGT01100000263479.F	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Euarchontoglires_A	ANCESTRAL SPECIES	7	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Glires	ANCESTRAL SPECIES	6	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Lagomorpha	ANCESTRAL SPECIES	152			ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00390000006319	ENSGT00940000160500	ENSGT01100000263479.D.a.c.a	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799
Rabbit	MODERN SPECIES	522	ENSOCUG00000030402	ENSOCUG00000036063	EXOSC5 (ENSOCUG00000011497)	BCKDHA (ENSOCUG00000023789)	B3GNT8 (ENSOCUG00000027388)	ERICH4 (ENSOCUG00000029714)	DMAC2 (ENSOCUG00000029322)	ENSOCUG00000008689	CXCL17 (ENSOCUG00000021666)	ENSOCUG00000035805	LIPE (ENSOCUG00000000017)	CNFN (ENSOCUG00000006494)	ENSOCUG00000006479	TMEM145 (ENSOCUG00000004380)	PRR19 (ENSOCUG00000023652)	PAFAH1B3 (ENSOCUG00000006470) ##22	CIC (ENSOCUG00000006458)	ERF (ENSOCUG00000039541)	GSK3A (ENSOCUG00000006441)	ZNF526 (ENSOCUG00000029615)	DEDD2 (ENSOCUG00000006435)	POU2F2 (ENSOCUG00000021776)	ZNF574 (ENSOCUG00000037409)
Pika	MODERN SPECIES	4277															ENSOPRG00000013875	PAFAH1B3 (ENSOPRG00000013848) ##22	ENSOPRG00000013812
Rodentia	ANCESTRAL SPECIES	8	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Rodentia_B	ANCESTRAL SPECIES	20	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT01100000263479.D.a.c.b.a.a	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Kangaroo rat	MODERN SPECIES	475	Smg9 (ENSDORG00000005079)	Plaur (ENSDORG00000005373)	Cadm4 (ENSDORG00000001271)	Zfp428 (ENSDORG00000028524)	Pinlyp (ENSDORG00000006113)	Xrcc1 (ENSDORG00000006108)	Ethe1 (ENSDORG00000002169)	Phldb3 (ENSDORG00000002164)	Lypd3 (ENSDORG00000010164)	ENSDORG00000006243	Lipe (ENSDORG00000007951)	Cnfn (ENSDORG00000007950)	Megf8 (ENSDORG00000007946)	Tmem145 (ENSDORG00000007941)	Prr19 (ENSDORG00000007940)	Pafah1b3 (ENSDORG00000008817) ##22	Cic (ENSDORG00000008822)	Erf (ENSDORG00000008823)	Gsk3a (ENSDORG00000008826)	Zfp526 (ENSDORG00000024798)	Dedd2 (ENSDORG00000026250)	Pou2f2 (ENSDORG00000025719)	Zfp574 (ENSDORG00000009702)	Grik5 (ENSDORG00000013438)	Atp1a3 (ENSDORG00000006771)	Rabac1 (ENSDORG00000006773)	Erfl (ENSDORG00000024424)	Arhgef1 (ENSDORG00000010815)	Cd79a (ENSDORG00000010814)	ENSDORG00000010812	Dmrtc2 (ENSDORG00000010810)
Myomorpha	ANCESTRAL SPECIES	20	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Muroidea	ANCESTRAL SPECIES	18	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p	ENSGT00940000161904
Muroidea_A	ANCESTRAL SPECIES	20	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
Cricetidae	ANCESTRAL SPECIES	26									ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.o.b
Cricetinae	ANCESTRAL SPECIES	34								ENSGT01100000263479.D.a.c.b.a.a	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.o.b	ENSGT00940000161904
Chinese hamster chok1gshd	MODERN SPECIES	295									Cxcl17 (ENSCGRG00001017481)	ENSCGRG00001023649	Lipe (ENSCGRG00001001445)	Cnfn (ENSCGRG00001021600)	Megf8 (ENSCGRG00001015887)	Tmem145 (ENSCGRG00001023312)	Prr19 (ENSCGRG00001013680)	Pafah1b3 (ENSCGRG00001008696) ##22	Cic (ENSCGRG00001017203)	Erf (ENSCGRG00001022509)	Gsk3a (ENSCGRG00001015543)	Zfp526 (ENSCGRG00001008967)	Dedd2 (ENSCGRG00001011876)	Pou2f2 (ENSCGRG00001013142)	Zfp574 (ENSCGRG00001001429)	Grik5 (ENSCGRG00001001142)	Atp1a3 (ENSCGRG00001010759)	Rabac1 (ENSCGRG00001021463)	Erfl (ENSCGRG00001017704)	Arhgef1 (ENSCGRG00001000673)	Cd79a (ENSCGRG00001018881)	ENSCGRG00001017202	Dmrtc2 (ENSCGRG00001016626)
Golden Hamster	MODERN SPECIES	863								ENSMAUG00000000868	Cxcl17 (ENSMAUG00000016706)	ENSMAUG00000004744	Lipe (ENSMAUG00000004660)	Cnfn (ENSMAUG00000021910)	Megf8 (ENSMAUG00000017117)	Tmem145 (ENSMAUG00000012415)	Prr19 (ENSMAUG00000005563)	Pafah1b3 (ENSMAUG00000009456) ##22	Cic (ENSMAUG00000001079)	Erf (ENSMAUG00000008527)	Gsk3a (ENSMAUG00000014364)	Zfp526 (ENSMAUG00000016121)	Dedd2 (ENSMAUG00000014233)	Pou2f2 (ENSMAUG00000010807)	Zfp574 (ENSMAUG00000018252)	Grik5 (ENSMAUG00000004340)	Erfl (ENSMAUG00000020529)	Arhgef1 (ENSMAUG00000013887)	ENSMAUG00000011201	Dmrtc2 (ENSMAUG00000016876)	Lypd4 (ENSMAUG00000012812)	Cd177 (ENSMAUG00000013142)
Cricetidae_B	ANCESTRAL SPECIES	41	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a.z	ENSGT01100000263479.D.a.c.b.a.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.o.b
Northern American deer mouse	MODERN SPECIES		Tmem91 (ENSPEMG00000016115)	Exosc5 (ENSPEMG00000018589)	Bckdha (ENSPEMG00000018189)	B3gnt8 (ENSPEMG00000005745)	Dmac2 (ENSPEMG00000010806)	Erich4 (ENSPEMG00000029662)	ENSPEMG00000031064	ENSPEMG00000017731	ENSPEMG00000012395	Cxcl17 (ENSPEMG00000013212)	Lipe (ENSPEMG00000018430)	Cnfn (ENSPEMG00000008799)	Megf8 (ENSPEMG00000015992)	Tmem145 (ENSPEMG00000008836)	Prr19 (ENSPEMG00000017854)	Pafah1b3 (ENSPEMG00000009631) ##22	Cic (ENSPEMG00000009522)	Erf (ENSPEMG00000015322)	Gsk3a (ENSPEMG00000009695)	Zfp526 (ENSPEMG00000000499)	Dedd2 (ENSPEMG00000029729)	ENSPEMG00000024366	Pou2f2 (ENSPEMG00000019227)	Zfp574 (ENSPEMG00000016061)	Grik5 (ENSPEMG00000017219)	Atp1a3 (ENSPEMG00000011099)	Rabac1 (ENSPEMG00000002744)	Erfl (ENSPEMG00000018034)	Arhgef1 (ENSPEMG00000012222)	Cd79a (ENSPEMG00000015673)	Rps19 (ENSPEMG00000015926)
Prairie vole	MODERN SPECIES	354	B9d2 (ENSMOCG00000017197)	ENSMOCG00000010017	Ccdc97 (ENSMOCG00000000596)	Hnrnpul1 (ENSMOCG00000008200)	Axl (ENSMOCG00000014019)	Cyp2s1 (ENSMOCG00000019209)	ENSMOCG00000002001	ENSMOCG00000017362	ENSMOCG00000002667	Cxcl17 (ENSMOCG00000013452)	Lipe (ENSMOCG00000004098)	Cnfn (ENSMOCG00000010534)	Megf8 (ENSMOCG00000009971)	Tmem145 (ENSMOCG00000011577)	Prr19 (ENSMOCG00000022197)	Pafah1b3 (ENSMOCG00000011582) ##22	Cic (ENSMOCG00000012897)	Erf (ENSMOCG00000009581)	Gsk3a (ENSMOCG00000013617)	Zfp526 (ENSMOCG00000022993)	Dedd2 (ENSMOCG00000017087)	Pou2f2 (ENSMOCG00000015602)	Zfp574 (ENSMOCG00000016268)	Grik5 (ENSMOCG00000001917)	Atp1a3 (ENSMOCG00000015750)	Rabac1 (ENSMOCG00000002729)	ENSMOCG00000011140	Arhgef1 (ENSMOCG00000009746)	Rps19 (ENSMOCG00000022408)	Dmrtc2 (ENSMOCG00000018292)	Lypd4 (ENSMOCG00000008530)
Murinae	ANCESTRAL SPECIES	19	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
Mus	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
Mus_A	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
Mus_B	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
Mus_C	ANCESTRAL SPECIES	15	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00960000192716	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f.p
spretus	MODERN SPECIES	16	Tgfb1 (MGP_SPRETEiJ_G0030475)	B9d2 (MGP_SPRETEiJ_G0030474)	Tmem91 (MGP_SPRETEiJ_G0030473)	Exosc5 (MGP_SPRETEiJ_G0030472)	Bckdha (MGP_SPRETEiJ_G0030471)	B3gnt8 (MGP_SPRETEiJ_G0030470)	Dmac2 (MGP_SPRETEiJ_G0030469)	Erich4 (MGP_SPRETEiJ_G0030468)	MGP_SPRETEiJ_G0030467	Cxcl17 (MGP_SPRETEiJ_G0030466)	Lipe (MGP_SPRETEiJ_G0030465)	Cnfn (MGP_SPRETEiJ_G0030464)	Megf8 (MGP_SPRETEiJ_G0030463)	Tmem145 (MGP_SPRETEiJ_G0030462)	Prr19 (MGP_SPRETEiJ_G0030461)	Pafah1b3 (MGP_SPRETEiJ_G0030460) ##22	Cic (MGP_SPRETEiJ_G0030459)	Erf (MGP_SPRETEiJ_G0030458)	Gsk3a (MGP_SPRETEiJ_G0030457)	Zfp526 (MGP_SPRETEiJ_G0030456)	Dedd2 (MGP_SPRETEiJ_G0030455)	Pou2f2 (MGP_SPRETEiJ_G0030454)	Zfp574 (MGP_SPRETEiJ_G0030453)	Grik5 (MGP_SPRETEiJ_G0030452)	Atp1a3 (MGP_SPRETEiJ_G0030451)	Rabac1 (MGP_SPRETEiJ_G0030450)	Arhgef1 (MGP_SPRETEiJ_G0030448)	Cd79a (MGP_SPRETEiJ_G0030447)	MGP_SPRETEiJ_G0030446	Dmrtc2 (MGP_SPRETEiJ_G0030445)	Lypd4 (MGP_SPRETEiJ_G0030444)
Steppe mouse	MODERN SPECIES	2675									ENSMSIG00000012187	ENSMSIG00000012175	Lipe (ENSMSIG00000012081)	Cnfn (ENSMSIG00000012052)	Megf8 (ENSMSIG00000012015)	Tmem145 (ENSMSIG00000011940)	ENSMSIG00000011932	Pafah1b3 (ENSMSIG00000011919) ##22	Cic (ENSMSIG00000011872)	Erf (ENSMSIG00000011854)	ENSMSIG00000011846	Gsk3a (ENSMSIG00000011808)	Zfp526 (ENSMSIG00000011798)	Dedd2 (ENSMSIG00000011774)	ENSMSIG00000011759	Pou2f2 (ENSMSIG00000010661)	Zfp574 (ENSMSIG00000010639)	ENSMSIG00000010626	Grik5 (ENSMSIG00000010580)	Atp1a3 (ENSMSIG00000010376)	ENSMSIG00000010352	Erfl (ENSMSIG00000010340)	Arhgef1 (ENSMSIG00000009574)
Mouse	MODERN SPECIES	16	B9d2 (ENSMUSG00000063439)	Tmem91 (ENSMUSG00000061702)	Exosc5 (ENSMUSG00000061286)	Bckdha (ENSMUSG00000060376)	B3gnt8 (ENSMUSG00000059479)	Dmac2 (ENSMUSG00000057229)	Erich4 (ENSMUSG00000074261)	Ceacam2 (ENSMUSG00000054385)	Ceacam1 (ENSMUSG00000074272)	Cxcl17 (ENSMUSG00000060188)	Lipe (ENSMUSG00000003123)	Cnfn (ENSMUSG00000063651)	Megf8 (ENSMUSG00000045039)	Tmem145 (ENSMUSG00000043843)	Prr19 (ENSMUSG00000058741)	Pafah1b3 (ENSMUSG00000005447) ##22	Cic (ENSMUSG00000005442)	Erf (ENSMUSG00000040857)	Gsk3a (ENSMUSG00000057177)	Zfp526 (ENSMUSG00000046541)	Dedd2 (ENSMUSG00000054499)	Pou2f2 (ENSMUSG00000008496)	Zfp574 (ENSMUSG00000045252)	Grik5 (ENSMUSG00000003378)	Atp1a3 (ENSMUSG00000040907)	Rabac1 (ENSMUSG00000003380)	Erfl (ENSMUSG00000108367)	Arhgef1 (ENSMUSG00000040940)	Cd79a (ENSMUSG00000003379)	Rps19 (ENSMUSG00000040952)	Dmrtc2 (ENSMUSG00000011349)
Ryukyu mouse	MODERN SPECIES	16	B9d2 (MGP_CAROLIEiJ_G0029378)	Tmem91 (MGP_CAROLIEiJ_G0029377)	Exosc5 (MGP_CAROLIEiJ_G0029376)	Bckdha (MGP_CAROLIEiJ_G0029375)	B3gnt8 (MGP_CAROLIEiJ_G0029374)	Dmac2 (MGP_CAROLIEiJ_G0029373)	Erich4 (MGP_CAROLIEiJ_G0029372)	MGP_CAROLIEiJ_G0029371	MGP_CAROLIEiJ_G0029370	Cxcl17 (MGP_CAROLIEiJ_G0029369)	Lipe (MGP_CAROLIEiJ_G0029368)	Cnfn (MGP_CAROLIEiJ_G0029367)	Megf8 (MGP_CAROLIEiJ_G0029366)	Tmem145 (MGP_CAROLIEiJ_G0029365)	Prr19 (MGP_CAROLIEiJ_G0029364)	Pafah1b3 (MGP_CAROLIEiJ_G0029363) ##22	Cic (MGP_CAROLIEiJ_G0029362)	Erf (MGP_CAROLIEiJ_G0029361)	Gsk3a (MGP_CAROLIEiJ_G0029360)	Zfp526 (MGP_CAROLIEiJ_G0029359)	Dedd2 (MGP_CAROLIEiJ_G0029358)	Pou2f2 (MGP_CAROLIEiJ_G0029357)	Zfp574 (MGP_CAROLIEiJ_G0029356)	Grik5 (MGP_CAROLIEiJ_G0029355)	Atp1a3 (MGP_CAROLIEiJ_G0029354)	Rabac1 (MGP_CAROLIEiJ_G0029353)	Arhgef1 (MGP_CAROLIEiJ_G0029351)	Cd79a (MGP_CAROLIEiJ_G0029350)	MGP_CAROLIEiJ_G0029349	Dmrtc2 (MGP_CAROLIEiJ_G0029348)	Lypd4 (MGP_CAROLIEiJ_G0029347)
Shrew mouse	MODERN SPECIES	10	B9d2 (MGP_PahariEiJ_G0021231)	Tmem91 (MGP_PahariEiJ_G0021230)	Exosc5 (MGP_PahariEiJ_G0021229)	Bckdha (MGP_PahariEiJ_G0021228)	B3gnt8 (MGP_PahariEiJ_G0021227)	Dmac2 (MGP_PahariEiJ_G0021226)	Erich4 (MGP_PahariEiJ_G0021225)	MGP_PahariEiJ_G0021224	MGP_PahariEiJ_G0021223	Cxcl17 (MGP_PahariEiJ_G0021222)	Lipe (MGP_PahariEiJ_G0021221)	Cnfn (MGP_PahariEiJ_G0021220)	Megf8 (MGP_PahariEiJ_G0021219)	Tmem145 (MGP_PahariEiJ_G0021218)	Prr19 (MGP_PahariEiJ_G0021217)	Pafah1b3 (MGP_PahariEiJ_G0021216) ##22	Cic (MGP_PahariEiJ_G0021215)	Erf (MGP_PahariEiJ_G0021214)	Gsk3a (MGP_PahariEiJ_G0021213)	Zfp526 (MGP_PahariEiJ_G0021212)	Dedd2 (MGP_PahariEiJ_G0021211)	Pou2f2 (MGP_PahariEiJ_G0021210)	Zfp574 (MGP_PahariEiJ_G0021209)	Grik5 (MGP_PahariEiJ_G0021208)	Atp1a3 (MGP_PahariEiJ_G0021207)	MGP_PahariEiJ_G0021206	Arhgef1 (MGP_PahariEiJ_G0021204)	Cd79a (MGP_PahariEiJ_G0021203)	MGP_PahariEiJ_G0021202	Dmrtc2 (MGP_PahariEiJ_G0021201)	Lypd4 (MGP_PahariEiJ_G0021200)
Rat	MODERN SPECIES		B9d2 (ENSRNOG00000028753)	Tmem91 (ENSRNOG00000068180)	Exosc5 (ENSRNOG00000020635)	Bckdha (ENSRNOG00000020607)	B3gnt8 (ENSRNOG00000068024)	Dmac2 (ENSRNOG00000020596)	Erich4 (ENSRNOG00000037798)	Ceacam1 (ENSRNOG00000020578)	Cxcl17 (ENSRNOG00000037814)	AC121639.1 (ENSRNOG00000020538)	Lipe (ENSRNOG00000020546)	Cnfn (ENSRNOG00000020530)	Megf8 (ENSRNOG00000052687)	Tmem145 (ENSRNOG00000020489)	Prr19 (ENSRNOG00000043154)	Pafah1b3 (ENSRNOG00000020481) ##22	Cic (ENSRNOG00000056118)	Erf (ENSRNOG00000020426)	Gsk3a (ENSRNOG00000020417)	Zfp526 (ENSRNOG00000047526)	Dedd2 (ENSRNOG00000046112)	Pou2f2 (ENSRNOG00000055650)	Zfp574 (ENSRNOG00000055761)	Grik5 (ENSRNOG00000020310)	Atp1a3 (ENSRNOG00000020263)	Rabac1 (ENSRNOG00000020233)	Erfl (ENSRNOG00000068986)	Arhgef1 (ENSRNOG00000020130)	Cd79a (ENSRNOG00000020125)	Rps19 (ENSRNOG00000037897)	Dmrtc2 (ENSRNOG00000020109)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1327										ENSNGAG00000024225	Lipe (ENSNGAG00000023105)	Cnfn (ENSNGAG00000005377)	Megf8 (ENSNGAG00000014330)	Tmem145 (ENSNGAG00000007684)	Prr19 (ENSNGAG00000012197)	Pafah1b3 (ENSNGAG00000017511) ##22	ENSNGAG00000020734	ENSNGAG00000014614	Erf (ENSNGAG00000005013)	Gsk3a (ENSNGAG00000018555)	Zfp526 (ENSNGAG00000018114)	Dedd2 (ENSNGAG00000021900)	Pou2f2 (ENSNGAG00000021598)	Zfp574 (ENSNGAG00000001555)	Grik5 (ENSNGAG00000024062)	Atp1a3 (ENSNGAG00000012235)	Rabac1 (ENSNGAG00000024184)	Erfl (ENSNGAG00000024008)	Arhgef1 (ENSNGAG00000004918)	Cd79a (ENSNGAG00000016621)	ENSNGAG00000023087
Lesser Egyptian jerboa	MODERN SPECIES	186	Cyp2f2 (ENSJJAG00000010382)	ENSJJAG00000004008	ENSJJAG00000010772	Cyp2g1 (ENSJJAG00000009018)	ENSJJAG00000015776	Ethe1 (ENSJJAG00000013800)	ENSJJAG00000013197	Lypd3 (ENSJJAG00000012768)	ENSJJAG00000016385	ENSJJAG00000015232	ENSJJAG00000014623	Cnfn (ENSJJAG00000013769)	ENSJJAG00000013061	Tmem145 (ENSJJAG00000012149)	Prr19 (ENSJJAG00000011188)	Pafah1b3 (ENSJJAG00000010925) ##22	Cic (ENSJJAG00000004156)	Erf (ENSJJAG00000000412)	Gsk3a (ENSJJAG00000000137)	Zfp526 (ENSJJAG00000014793)	ENSJJAG00000022418	Pou2f2 (ENSJJAG00000022155)	Zfp574 (ENSJJAG00000021785)	Grik5 (ENSJJAG00000015626)	Atp1a3 (ENSJJAG00000012190)	Erfl (ENSJJAG00000003327)	Arhgef1 (ENSJJAG00000019422)	Cd79a (ENSJJAG00000016983)	ENSJJAG00000016317	Dmrtc2 (ENSJJAG00000016059)	Lypd4 (ENSJJAG00000015698)
Rodentia_A	ANCESTRAL SPECIES	6	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.a	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Hystricomorpha_a	ANCESTRAL SPECIES	39	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Guinea pig	MODERN SPECIES	80	ZMAT4 (ENSCPOG00000015224)	TCIM (ENSCPOG00000013411)	IDO2 (ENSCPOG00000033051)	IDO1 (ENSCPOG00000014771)	ENSCPOG00000015304	ENSCPOG00000008853	ENSCPOG00000030322	ENSCPOG00000012967	ENSCPOG00000007329	CXCL17 (ENSCPOG00000039366)	LIPE (ENSCPOG00000020887)	CNFN (ENSCPOG00000034761)	MEGF8 (ENSCPOG00000012979)	TMEM145 (ENSCPOG00000012974)	PRR19 (ENSCPOG00000024016)	PAFAH1B3 (ENSCPOG00000004397) ##22	CIC (ENSCPOG00000004391)	ENSCPOG00000001808	GSK3A (ENSCPOG00000026896)	ZNF526 (ENSCPOG00000034474)	DEDD2 (ENSCPOG00000019827)	POU2F2 (ENSCPOG00000000781)	ZNF574 (ENSCPOG00000000780)	GRIK5 (ENSCPOG00000018909)	ATP1A3 (ENSCPOG00000010576)	RABAC1 (ENSCPOG00000021982)	ENSCPOG00000031488	ENSCPOG00000034092	CD79A (ENSCPOG00000011889)	RPS19 (ENSCPOG00000025140)	DMRTC2 (ENSCPOG00000001805)
Hystricomorpha_b	ANCESTRAL SPECIES	49	ENSGT00940000160457.h	ENSGT00940000161428	ENSGT00950000183147.A.b.a	ENSGT00940000153348.C	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Degu	MODERN SPECIES	238							ENSODEG00000010092	ENSODEG00000010781	ENSODEG00000019766	CXCL17 (ENSODEG00000010054)	LIPE (ENSODEG00000009773)	CNFN (ENSODEG00000010917)	MEGF8 (ENSODEG00000010413)	TMEM145 (ENSODEG00000010150)	PRR19 (ENSODEG00000009341)	PAFAH1B3 (ENSODEG00000011390) ##22	CIC (ENSODEG00000011664)	ERF (ENSODEG00000009178)	GSK3A (ENSODEG00000014312)	ZNF526 (ENSODEG00000019954)	DEDD2 (ENSODEG00000010982)	POU2F2 (ENSODEG00000011310)	ZNF574 (ENSODEG00000013318)	GRIK5 (ENSODEG00000012165)	ATP1A3 (ENSODEG00000009220)	RABAC1 (ENSODEG00000008871)	ERFL (ENSODEG00000009283)	ARHGEF1 (ENSODEG00000009700)	CD79A (ENSODEG00000009588)	RPS19 (ENSODEG00000009249)	DMRTC2 (ENSODEG00000009170)
Long-tailed chinchilla	MODERN SPECIES	262	TGFB1 (ENSCLAG00000001227)	B9D2 (ENSCLAG00000000822)	TMEM91 (ENSCLAG00000000996)	EXOSC5 (ENSCLAG00000001186)	BCKDHA (ENSCLAG00000000736)	B3GNT8 (ENSCLAG00000001017)	DMAC2 (ENSCLAG00000001090)	ERICH4 (ENSCLAG00000000843)	ENSCLAG00000001267	CXCL17 (ENSCLAG00000001312)	LIPE (ENSCLAG00000001355)	CNFN (ENSCLAG00000001511)	MEGF8 (ENSCLAG00000002648)	TMEM145 (ENSCLAG00000003087)	PRR19 (ENSCLAG00000000685)	PAFAH1B3 (ENSCLAG00000000723) ##22	CIC (ENSCLAG00000000862)	ERF (ENSCLAG00000002511)	GSK3A (ENSCLAG00000002825)	ZNF526 (ENSCLAG00000002951)	DEDD2 (ENSCLAG00000002983)	POU2F2 (ENSCLAG00000004593)	ZNF574 (ENSCLAG00000006252)	GRIK5 (ENSCLAG00000006835)	ATP1A3 (ENSCLAG00000001351)	RABAC1 (ENSCLAG00000001671)	ERFL (ENSCLAG00000001752)	ENSCLAG00000001895	CD79A (ENSCLAG00000001020)	RPS19 (ENSCLAG00000001110)	DMRTC2 (ENSCLAG00000001131)
Naked mole-rat female	MODERN SPECIES	21	TGFB1 (ENSHGLG00000007211)	B9D2 (ENSHGLG00000005896)	TMEM91 (ENSHGLG00000036227)	EXOSC5 (ENSHGLG00000008975)	BCKDHA (ENSHGLG00000050952)	B3GNT8 (ENSHGLG00000010364)	ERICH4 (ENSHGLG00000048703)	ENSHGLG00000011199	ENSHGLG00000009638	ATP5SL (ENSHGLG00000039004)	LIPE (ENSHGLG00000002222)	CNFN (ENSHGLG00000046457)	MEGF8 (ENSHGLG00000010524)	TMEM145 (ENSHGLG00000010011)	PRR19 (ENSHGLG00000003163)	PAFAH1B3 (ENSHGLG00000003652) ##22	CIC (ENSHGLG00000019229)	ERF (ENSHGLG00000003539)	GSK3A (ENSHGLG00000004094)	ZNF526 (ENSHGLG00000002054)	DEDD2 (ENSHGLG00000002113)	POU2F2 (ENSHGLG00000002691)	ZNF574 (ENSHGLG00000003903)	GRIK5 (ENSHGLG00000004011)	ATP1A3 (ENSHGLG00000004227)	RABAC1 (ENSHGLG00000006853)	ERFL (ENSHGLG00000002910)	ARHGEF1 (ENSHGLG00000003059)	CD79A (ENSHGLG00000001725)	ENSHGLG00000040845	ENSHGLG00000050295
Sciuridae	ANCESTRAL SPECIES	5	ENSGT00940000153348.C.d	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.a.a	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Marmotini	ANCESTRAL SPECIES	7	ENSGT00940000153348.C.d	ENSGT00530000063174.b	ENSGT00940000161895	ENSGT00940000160500	ENSGT00390000006319	ENSGT01100000263479.D.a.c.b.b.b	ENSGT01100000263479.D.a.c.b.a.b	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Marmotini_b	ANCESTRAL SPECIES	49							ENSGT01100000263479.D.a.c.b.a.a	ENSGT00390000002861	ENSGT00940000171483	ENSGT00990000204044	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Squirrel	MODERN SPECIES	306										CXCL17 (ENSSTOG00000011599)	Lipe (ENSSTOG00000011564)	CNFN (ENSSTOG00000020414)	MEGF8 (ENSSTOG00000000868)	TMEM145 (ENSSTOG00000022861)	PRR19 (ENSSTOG00000024823)	PAFAH1B3 (ENSSTOG00000000864) ##22	CIC (ENSSTOG00000000852)	ERF (ENSSTOG00000000849)	GSK3A (ENSSTOG00000000841)	ZNF526 (ENSSTOG00000019390)	DEDD2 (ENSSTOG00000020972)	POU2F2 (ENSSTOG00000021390)	ZNF574 (ENSSTOG00000028612)	GRIK5 (ENSSTOG00000011995)	ATP1A3 (ENSSTOG00000004030)	RABAC1 (ENSSTOG00000022795)	ENSSTOG00000032462	ARHGEF1 (ENSSTOG00000003526)	CD79A (ENSSTOG00000003518)	ENSSTOG00000003502	DMRTC2 (ENSSTOG00000003484)
Arctic ground squirrel	MODERN SPECIES	297							ENSUPAG00010001516	CXCL17 (ENSUPAG00010001506)	ENSUPAG00010001502	ENSUPAG00010001487	LIPE (ENSUPAG00010001422)	CNFN (ENSUPAG00010001399)	MEGF8 (ENSUPAG00010001326)	TMEM145 (ENSUPAG00010001258)	PRR19 (ENSUPAG00010001251)	PAFAH1B3 (ENSUPAG00010001213) ##22	CIC (ENSUPAG00010000939)	ERF (ENSUPAG00010000918)	GSK3A (ENSUPAG00010000883)	ZNF526 (ENSUPAG00010000881)	DEDD2 (ENSUPAG00010000870)	POU2F2 (ENSUPAG00010000238)	ZNF574 (ENSUPAG00010000222)	GRIK5 (ENSUPAG00010000202)	ATP1A3 (ENSUPAG00010000095)	RABAC1 (ENSUPAG00010000053)	ERFL (ENSUPAG00010021971)	ARHGEF1 (ENSUPAG00010021957)	CD79A (ENSUPAG00010021954)	RPS19 (ENSUPAG00010021947)	DMRTC2 (ENSUPAG00010021944)
Alpin marmot	MODERN SPECIES	45	BCKDHA (ENSMMMG00000019648)	B3GNT8 (ENSMMMG00000019646)	DMAC2 (ENSMMMG00000019632)	ERICH4 (ENSMMMG00000019627)	ENSMMMG00000019076	ENSMMMG00000018966	CXCL17 (ENSMMMG00000018960)	ENSMMMG00000018958	ENSMMMG00000018948	LIPE (ENSMMMG00000018935)	CNFN (ENSMMMG00000018928)	MEGF8 (ENSMMMG00000018897)	TMEM145 (ENSMMMG00000018870)	ENSMMMG00000018865	PRR19 (ENSMMMG00000018862)	PAFAH1B3 (ENSMMMG00000018822) ##22	CIC (ENSMMMG00000018746)	ERF (ENSMMMG00000018735)	GSK3A (ENSMMMG00000018714)	ZNF526 (ENSMMMG00000018710)	DEDD2 (ENSMMMG00000018702)	POU2F2 (ENSMMMG00000018186)	ZNF574 (ENSMMMG00000018163)	GRIK5 (ENSMMMG00000018145)	ATP1A3 (ENSMMMG00000018094)	RABAC1 (ENSMMMG00000018088)	ERFL (ENSMMMG00000018083)	ARHGEF1 (ENSMMMG00000016411)	CD79A (ENSMMMG00000016388)	RPS19 (ENSMMMG00000016380)	DMRTC2 (ENSMMMG00000016375)
Eurasian red squirrel	MODERN SPECIES	8	ENSSVLG00005023388	BCKDHA (ENSSVLG00005023470)	B3GNT8 (ENSSVLG00005023527)	DMAC2 (ENSSVLG00005023559)	ERICH4 (ENSSVLG00005023663)	ENSSVLG00005023751	ENSSVLG00005024022	ENSSVLG00005024078	CXCL17 (ENSSVLG00005024192)	ENSSVLG00005024214	LIPE (ENSSVLG00005024237)	CNFN (ENSSVLG00005024319)	MEGF8 (ENSSVLG00005024356)	TMEM145 (ENSSVLG00005024411)	PRR19 (ENSSVLG00005024445)	PAFAH1B3 (ENSSVLG00005024469) ##22	CIC (ENSSVLG00005024515)	ERF (ENSSVLG00005024686)	GSK3A (ENSSVLG00005024717)	ZNF526 (ENSSVLG00005024751)	DEDD2 (ENSSVLG00005024774)	POU2F2 (ENSSVLG00005024957)	ZNF574 (ENSSVLG00005025008)	GRIK5 (ENSSVLG00005025036)	ATP1A3 (ENSSVLG00005025087)	RABAC1 (ENSSVLG00005025214)	ERFL (ENSSVLG00005025238)	ARHGEF1 (ENSSVLG00005025285)	CD79A (ENSSVLG00005025331)	RPS19 (ENSSVLG00005025346)	DMRTC2 (ENSSVLG00005025370)
Primates	ANCESTRAL SPECIES	15	ENSGT00730000111407	ENSGT00510000048991	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Strepsirrhini	ANCESTRAL SPECIES	16										ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Lemuriformes	ANCESTRAL SPECIES	15										ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Mouse lemur	MODERN SPECIES	14	ZNF580 (ENSMICG00000044200)	CCDC106 (ENSMICG00000030139)	U2AF2 (ENSMICG00000027681)	EPN1 (ENSMICG00000030667)	ENSMICG00000031661	ENSMICG00000042403	ENSMICG00000045244	ENSMICG00000036846	CXCL17 (ENSMICG00000047306)	LIPE (ENSMICG00000015308)	CNFN (ENSMICG00000041430)	MEGF8 (ENSMICG00000015225)	TMEM145 (ENSMICG00000015206)	PRR19 (ENSMICG00000015202)	CIC (ENSMICG00000030301)	PAFAH1B3 (ENSMICG00000015196) ##22	ERF (ENSMICG00000004694)	GSK3A (ENSMICG00000046754)	DEDD2 (ENSMICG00000015165)	POU2F2 (ENSMICG00000015156)	ZNF574 (ENSMICG00000014468)	GRIK5 (ENSMICG00000015136)	ATP1A3 (ENSMICG00000008581)	RABAC1 (ENSMICG00000008574)	ERFL (ENSMICG00000009519)	ARHGEF1 (ENSMICG00000009512)	CD79A (ENSMICG00000004558)	ENSMICG00000004554	DMRTC2 (ENSMICG00000004546)	LYPD4 (ENSMICG00000004542)	ENSMICG00000009289
Lemuriformes_a	ANCESTRAL SPECIES	5	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a.w	ENSGT01100000263479.D.a.c.b.j.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	568	IRGQ (ENSPCOG00000020543)	PINLYP (ENSPCOG00000014942)	XRCC1 (ENSPCOG00000024704)	ZNF575 (ENSPCOG00000019955)	ETHE1 (ENSPCOG00000023403)	PHLDB3 (ENSPCOG00000026283)	LYPD3 (ENSPCOG00000013646)	TEX101 (ENSPCOG00000024580)	CD177 (ENSPCOG00000005033)	ENSPCOG00000018850	CXCL17 (ENSPCOG00000012786)	LIPE (ENSPCOG00000023640)	MEGF8 (ENSPCOG00000011104)	TMEM145 (ENSPCOG00000014640)	PRR19 (ENSPCOG00000013235)	ENSPCOG00000024389 ##22	CIC (ENSPCOG00000000853)	ERF (ENSPCOG00000021324)	GSK3A (ENSPCOG00000018246)	DEDD2 (ENSPCOG00000016557)	POU2F2 (ENSPCOG00000014028)	ZNF574 (ENSPCOG00000026282)	GRIK5 (ENSPCOG00000024041)	ATP1A3 (ENSPCOG00000021213)	RABAC1 (ENSPCOG00000002815)	ERFL (ENSPCOG00000020979)	ARHGEF1 (ENSPCOG00000016706)	CD79A (ENSPCOG00000022258)	RPS19 (ENSPCOG00000009850)	DMRTC2 (ENSPCOG00000008626)	LYPD4 (ENSPCOG00000022609)
Coquerels sifaka	MODERN SPECIES	112									LRRTM3 (ENSPCOG00000014466)	CTNNA3 (ENSPCOG00000023024)	DNAJC12 (ENSPCOG00000018434)	SIRT1 (ENSPCOG00000026548)	HERC4 (ENSPCOG00000022282)	ENSPCOG00000008830	MYPN (ENSPCOG00000027878)	ENSPCOG00000013324 ##22	PBLD (ENSPCOG00000019095)	HNRNPH3 (ENSPCOG00000028162)	RUFY2 (ENSPCOG00000020569)	ENSPCOG00000024631	DNA2 (ENSPCOG00000027108)	ENSPCOG00000026884	TET1 (ENSPCOG00000022641)	CCAR1 (ENSPCOG00000020489)	STOX1 (ENSPCOG00000018096)	DDX50 (ENSPCOG00000012574)	DDX21 (ENSPCOG00000019284)	KIFBP (ENSPCOG00000006398)	SRGN (ENSPCOG00000028219)	ENSPCOG00000018264	SUPV3L1 (ENSPCOG00000021435)
Greater bamboo lemur	MODERN SPECIES	426											LIPE (ENSPSMG00000017461)	CNFN (ENSPSMG00000017424)	MEGF8 (ENSPSMG00000017417)	TMEM145 (ENSPSMG00000017408)	PRR19 (ENSPSMG00000017364)	PAFAH1B3 (ENSPSMG00000017360) ##22	CIC (ENSPSMG00000017260)	ERF (ENSPSMG00000017164)	GSK3A (ENSPSMG00000017100)	ZNF526 (ENSPSMG00000017031)	DEDD2 (ENSPSMG00000017024)	POU2F2 (ENSPSMG00000016965)	ZNF574 (ENSPSMG00000016813)	GRIK5 (ENSPSMG00000016806)	ATP1A3 (ENSPSMG00000016692)	ERFL (ENSPSMG00000016248)	ARHGEF1 (ENSPSMG00000016214)	CD79A (ENSPSMG00000016063)	RPS19 (ENSPSMG00000016049)	DMRTC2 (ENSPSMG00000016031)	LYPD4 (ENSPSMG00000016018)
Bushbaby	MODERN SPECIES	267	IRGQ (ENSOGAG00000009518)	PINLYP (ENSOGAG00000009513)	XRCC1 (ENSOGAG00000009506)	ZNF575 (ENSOGAG00000027522)	ETHE1 (ENSOGAG00000009504)	PHLDB3 (ENSOGAG00000031884)	LYPD3 (ENSOGAG00000009282)	TEX101 (ENSOGAG00000009279)	CD177 (ENSOGAG00000010373)	ENSOGAG00000002909	LIPE (ENSOGAG00000013637)	CNFN (ENSOGAG00000032095)	MEGF8 (ENSOGAG00000013619)	TMEM145 (ENSOGAG00000027203)	PRR19 (ENSOGAG00000032028)	PAFAH1B3 (ENSOGAG00000030084) ##22	CIC (ENSOGAG00000003964)	ERF (ENSOGAG00000033523)	GSK3A (ENSOGAG00000008509)	ZNF526 (ENSOGAG00000031877)	DEDD2 (ENSOGAG00000027751)	POU2F2 (ENSOGAG00000007840)	ZNF574 (ENSOGAG00000030944)	GRIK5 (ENSOGAG00000015433)	ATP1A3 (ENSOGAG00000004731)	RABAC1 (ENSOGAG00000001786)	ARHGEF1 (ENSOGAG00000005684)	CD79A (ENSOGAG00000012001)	RPS19 (ENSOGAG00000026255)	DMRTC2 (ENSOGAG00000011998)	LYPD4 (ENSOGAG00000025037)
Haplorrhini	ANCESTRAL SPECIES	16	ENSGT00730000111407	ENSGT00510000048991	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Tarsier	MODERN SPECIES	5166									ENSTSYG00000026064	CXCL17 (ENSTSYG00000009285)	LIPE (ENSTSYG00000009283)	CNFN (ENSTSYG00000035277)	MEGF8 (ENSTSYG00000028698)	TMEM145 (ENSTSYG00000008141)	PRR19 (ENSTSYG00000008126)	PAFAH1B3 (ENSTSYG00000036403) ##22	CIC (ENSTSYG00000030592)
Simiiformes	ANCESTRAL SPECIES	16	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Platyrrhini	ANCESTRAL SPECIES	20	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799.b	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549.b	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Cebidae	ANCESTRAL SPECIES	8	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799.b	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549.b	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Cebidae_a	ANCESTRAL SPECIES	55								ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799.b	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549.b	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Bolivian squirrel monkey	MODERN SPECIES	218							ENSSBOG00000030354	CEACAM8 (ENSSBOG00000025143)	ENSSBOG00000021420	CXCL17 (ENSSBOG00000027519)	LIPE (ENSSBOG00000019446)	CNFN (ENSSBOG00000028577)	MEGF8 (ENSSBOG00000028003)	TMEM145 (ENSSBOG00000035029)	PRR19 (ENSSBOG00000019280)	PAFAH1B3 (ENSSBOG00000030086) ##22	CIC (ENSSBOG00000013569)	ERF (ENSSBOG00000020853)	GSK3A (ENSSBOG00000022542)	ZNF526 (ENSSBOG00000019562)	DEDD2 (ENSSBOG00000030981)	POU2F2 (ENSSBOG00000024365)	ZNF574 (ENSSBOG00000027597)	GRIK5 (ENSSBOG00000022110)	ATP1A3 (ENSSBOG00000026931)	RABAC1 (ENSSBOG00000018697)	ERFL (ENSSBOG00000028753)	ARHGEF1 (ENSSBOG00000034166)	CD79A (ENSSBOG00000026660)	RPS19 (ENSSBOG00000026946)	DMRTC2 (ENSSBOG00000016003)
Capuchin	MODERN SPECIES	306								CEACAM8 (ENSCCAG00000022335)	ENSCCAG00000022166	CXCL17 (ENSCCAG00000027291)	LIPE (ENSCCAG00000031538)	CNFN (ENSCCAG00000030183)	MEGF8 (ENSCCAG00000021324)	TMEM145 (ENSCCAG00000033785)	PRR19 (ENSCCAG00000028670)	PAFAH1B3 (ENSCCAG00000002974) ##22	CIC (ENSCCAG00000035181)	ERF (ENSCCAG00000027152)	GSK3A (ENSCCAG00000038124)	ZNF526 (ENSCCAG00000019875)	DEDD2 (ENSCCAG00000034550)	POU2F2 (ENSCCAG00000035483)	ZNF574 (ENSCCAG00000032818)	GRIK5 (ENSCCAG00000037408)	ATP1A3 (ENSCCAG00000034309)	RABAC1 (ENSCCAG00000031894)	ERFL (ENSCCAG00000030582)	ARHGEF1 (ENSCCAG00000036552)	CD79A (ENSCCAG00000037944)	RPS19 (ENSCCAG00000033416)	DMRTC2 (ENSCCAG00000019056)
Marmoset	MODERN SPECIES	14	TEX101 (ENSCJAG00000013643)	ENSCJAG00000013647	ENSCJAG00000054047	ENSCJAG00000080826	ENSCJAG00000017073	ENSCJAG00000047070	CEACAM8 (ENSCJAG00000046660)	ENSCJAG00000079965	ENSCJAG00000012987	CXCL17 (ENSCJAG00000012985)	LIPE (ENSCJAG00000012963)	CNFN (ENSCJAG00000012952)	ENSCJAG00000012930	TMEM145 (ENSCJAG00000012919)	PRR19 (ENSCJAG00000012914)	PAFAH1B3 (ENSCJAG00000012900) ##22	CIC (ENSCJAG00000012847)	ERF (ENSCJAG00000058052)	GSK3A (ENSCJAG00000012791)	ZNF526 (ENSCJAG00000012788)	DEDD2 (ENSCJAG00000012770)	POU2F2 (ENSCJAG00000012753)	ZNF574 (ENSCJAG00000043982)	GRIK5 (ENSCJAG00000012725)	ATP1A3 (ENSCJAG00000012623)	RABAC1 (ENSCJAG00000012607)	ERFL (ENSCJAG00000020277)	ARHGEF1 (ENSCJAG00000020252)	CD79A (ENSCJAG00000020247)	ENSCJAG00000020243	DMRTC2 (ENSCJAG00000020238)
Mas night monkey	DUPLICATION
Mas night monkey	MODERN SPECIES	472							CEACAM8 (ENSANAG00000030725)	ENSANAG00000024195	ENSANAG00000013269	CXCL17 (ENSANAG00000034293)	LIPE (ENSANAG00000019026)	CNFN (ENSANAG00000028219)	MEGF8 (ENSANAG00000028714)	TMEM145 (ENSANAG00000022076)	PRR19 (ENSANAG00000035399)	ENSANAG00000000178 ##22	CIC (ENSANAG00000025026)	ERF (ENSANAG00000029577)	GSK3A (ENSANAG00000035264)	ZNF526 (ENSANAG00000035364)	DEDD2 (ENSANAG00000028365)	POU2F2 (ENSANAG00000035824)	ZNF574 (ENSANAG00000034608)	GRIK5 (ENSANAG00000038058)	ATP1A3 (ENSANAG00000023145)	ENSANAG00000019937	ERFL (ENSANAG00000027041)	ARHGEF1 (ENSANAG00000020006)	CD79A (ENSANAG00000034787)	RPS19 (ENSANAG00000036544)	DMRTC2 (ENSANAG00000033057)
Mas night monkey	MODERN SPECIES	442	KLHL7 (ENSANAG00000023416)	ENSANAG00000029090	GPNMB (ENSANAG00000037499)	MALSU1 (ENSANAG00000038181)	IGF2BP3 (ENSANAG00000022059)	ENSANAG00000022407	TRA2A (ENSANAG00000035184)	ENSANAG00000029761	CCDC126 (ENSANAG00000021445)	ENSANAG00000030837	FAM221A (ENSANAG00000025669)	STK31 (ENSANAG00000029927)	NPY (ENSANAG00000024297)	PALS2 (ENSANAG00000022814)	GSDME (ENSANAG00000035451)	ENSANAG00000026482 ##22	ENSANAG00000021188	OSBPL3 (ENSANAG00000028296)	ENSANAG00000033111	ENSANAG00000028593	ENSANAG00000033583	C7orf31 (ENSANAG00000027077)	NPVF (ENSANAG00000035252)	NFE2L3 (ENSANAG00000027774)	ENSANAG00000033016	CBX3 (ENSANAG00000022611)	SNX10 (ENSANAG00000021914)	SKAP2 (ENSANAG00000029886)	ENSANAG00000025984	HOXA1 (ENSANAG00000037615)	HOXA2 (ENSANAG00000025238)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.c	ENSGT01100000263479.D.a.c.a.b.d.a.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Cercopithecidae	ANCESTRAL SPECIES	12	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES	7								ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.w ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Black snub-nosed monkey	MODERN SPECIES	1480									ENSRBIG00000038958	CEACAM8 (ENSRBIG00000036569)	ENSRBIG00000029372	CXCL17 (ENSRBIG00000034024)	LIPE (ENSRBIG00000026032)	MEGF8 (ENSRBIG00000030430)	TMEM145 (ENSRBIG00000027953)	ENSRBIG00000036695 ##22	CIC (ENSRBIG00000037882)	ERF (ENSRBIG00000044831)	GSK3A (ENSRBIG00000026755)	DEDD2 (ENSRBIG00000036819)	POU2F2 (ENSRBIG00000033424)	ENSRBIG00000002228	ZNF574 (ENSRBIG00000039444)	GRIK5 (ENSRBIG00000039241)	ATP1A3 (ENSRBIG00000040005)	RABAC1 (ENSRBIG00000043920)	ERFL (ENSRBIG00000027943)	ARHGEF1 (ENSRBIG00000037210)	OLFM3 (ENSRBIG00000035890)
Golden snub-nosed monkey	MODERN SPECIES	826								CEACAM8 (ENSRROG00000030909)	ENSRROG00000031807	CXCL17 (ENSRROG00000032330)	LIPE (ENSRROG00000031425)	CNFN (ENSRROG00000034326)	MEGF8 (ENSRROG00000029639)	TMEM145 (ENSRROG00000030044)	PRR19 (ENSRROG00000045744)	PAFAH1B3 (ENSRROG00000039439) ##22	CIC (ENSRROG00000031194)	ERF (ENSRROG00000030775)	GSK3A (ENSRROG00000018920)	DEDD2 (ENSRROG00000036764)	POU2F2 (ENSRROG00000039207)	ENSRROG00000043003	ZNF574 (ENSRROG00000039347)	GRIK5 (ENSRROG00000023216)	ATP1A3 (ENSRROG00000030951)	RABAC1 (ENSRROG00000038065)
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.x ##22
Black snub-nosed monkey	MODERN SPECIES	1258	PRKD1 (ENSRBIG00000023650)	ENSRBIG00000044315	ENSRBIG00000021976	G2E3 (ENSRBIG00000038648)	SCFD1 (ENSRBIG00000035795)	COCH (ENSRBIG00000024567)	STRN3 (ENSRBIG00000034106)	ENSRBIG00000031706	HECTD1 (ENSRBIG00000014027)	HEATR5A (ENSRBIG00000035494)	DTD2 (ENSRBIG00000031412)	NUBPL (ENSRBIG00000033232)	ENSRBIG00000038307	ARHGAP5 (ENSRBIG00000016020)	AKAP6 (ENSRBIG00000038045)	ENSRBIG00000032788 ##22	NPAS3 (ENSRBIG00000032686)	ENSRBIG00000019858	EGLN3 (ENSRBIG00000039961)	SPTSSA (ENSRBIG00000039846)	EAPP (ENSRBIG00000044230)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.b.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00510000048142.i.b	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A
Macaca	DUPLICATION
Macaca	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b.y ##22
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000016029	ENSGT00940000155015	ENSGT01100000263539.b.b.b.b.b.a.a.a.b.b	ENSGT00950000183196.B	ENSGT00940000155708	ENSGT00390000003738.a.b.g.a	ENSGT00940000154509	ENSGT00940000155893.b	ENSGT00890000139496	ENSGT00940000158435	ENSGT00940000153497.E	ENSGT00940000154964	ENSGT00390000015520	ENSGT00390000002757	ENSGT00940000160075	ENSGT00950000183199.a.b.y ##22	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00940000157208	ENSGT00390000004096	ENSGT00390000015980	ENSGT00940000158168	ENSGT00390000017913.c	ENSGT00940000160751	ENSGT00390000018298	ENSGT00940000157023	ENSGT00940000158681	ENSGT00940000161633
Rhesus	MODERN SPECIES	11	ENSMMUG00000062587	TNIK (ENSMMUG00000022262)	SLC2A2 (ENSMMUG00000014385)	EIF5A2 (ENSMMUG00000022880)	RPL22L1 (ENSMMUG00000022881)	ENSMMUG00000050772	ENSMMUG00000059352	SLC7A14 (ENSMMUG00000013987)	CLDN11 (ENSMMUG00000059260)	SKIL (ENSMMUG00000039099)	PRKCI (ENSMMUG00000011222)	PHC3 (ENSMMUG00000022199)	GPR160 (ENSMMUG00000022196)	SEC62 (ENSMMUG00000021899)	SAMD7 (ENSMMUG00000058204)	ENSMMUG00000021893 ##22	LRRC31 (ENSMMUG00000021889)	LRRIQ4 (ENSMMUG00000021884)	LRRC34 (ENSMMUG00000021879)	MYNN (ENSMMUG00000021875)	ACTRT3 (ENSMMUG00000021874)	ENSMMUG00000051641	MECOM (ENSMMUG00000002242)	ENSMMUG00000053615	GOLIM4 (ENSMMUG00000020734)	ENSMMUG00000047393	SERPINI1 (ENSMMUG00000005939)	PDCD10 (ENSMMUG00000005938)	WDR49 (ENSMMUG00000022925)	ZBBX (ENSMMUG00000023045)	BCHE (ENSMMUG00000003742)
Crab-eating macaque	MODERN SPECIES	11	TMEM212 (ENSMFAG00000001516)	PLD1 (ENSMFAG00000002954)	ENSMFAG00000059130	TNIK (ENSMFAG00000039273)	SLC2A2 (ENSMFAG00000038078)	EIF5A2 (ENSMFAG00000032595)	RPL22L1 (ENSMFAG00000041383)	SLC7A14 (ENSMFAG00000032560)	CLDN11 (ENSMFAG00000040128)	SKIL (ENSMFAG00000029995)	PRKCI (ENSMFAG00000042910)	PHC3 (ENSMFAG00000034130)	GPR160 (ENSMFAG00000028035)	SEC62 (ENSMFAG00000017749)	SAMD7 (ENSMFAG00000044546)	ENSMFAG00000031148 ##22	LRRC31 (ENSMFAG00000003366)	LRRIQ4 (ENSMFAG00000033658)	LRRC34 (ENSMFAG00000002615)	MYNN (ENSMFAG00000034575)	ACTRT3 (ENSMFAG00000039587)	MECOM (ENSMFAG00000033167)	ENSMFAG00000058968	GOLIM4 (ENSMFAG00000057001)	ENSMFAG00000003100	SERPINI1 (ENSMFAG00000032238)	ENSMFAG00000045071	ENSMFAG00000054365	WDR49 (ENSMFAG00000043934)	ZBBX (ENSMFAG00000042164)	ENSMFAG00000050005
Macaca	ANCESTRAL SPECIES	12	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.b.b	ENSGT01100000263479.D.a.c.a.b.c.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.z ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00510000048142.i.b	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.a	ENSGT01100000263479.D.a.c.a.b.c.a.b.a.a.a.b.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT01100000263539.b.a.a.a.b.b.a.b.b.b.b.b.a	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b.z ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.f	ENSGT00940000161904
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000052971	ENSMFAG00000038834	ENSMFAG00000046378	ENSMFAG00000047658	ENSMFAG00000065464	ENSMFAG00000001177	CEACAM8 (ENSMFAG00000000741)	ENSMFAG00000046367	CXCL17 (ENSMFAG00000050563)	LIPE (ENSMFAG00000030784)	CNFN (ENSMFAG00000035661)	ENSMFAG00000059804	MEGF8 (ENSMFAG00000043792)	TMEM145 (ENSMFAG00000037390)	PRR19 (ENSMFAG00000036917)	ENSMFAG00000031090 ##22	CIC (ENSMFAG00000042927)	ERF (ENSMFAG00000035885)	ZNF526 (ENSMFAG00000044402)	GSK3A (ENSMFAG00000001497)	POU2F2 (ENSMFAG00000030322)	ENSMFAG00000049974	ENSMFAG00000049208	GRIK5 (ENSMFAG00000039157)	ATP1A3 (ENSMFAG00000000209)	RABAC1 (ENSMFAG00000030347)	ARHGEF1 (ENSMFAG00000032261)	CD79A (ENSMFAG00000001013)	ENSMFAG00000045611	ENSMFAG00000049391	DMRTC2 (ENSMFAG00000045593)
Rhesus	MODERN SPECIES	10	ENSMMUG00000049459	ENSMMUG00000064250	ENSMMUG00000050799	ENSMMUG00000063977	ENSMMUG00000039210	ENSMMUG00000056518	CEACAM8 (ENSMMUG00000044353)	ENSMMUG00000038920	CXCL17 (ENSMMUG00000058656)	LIPE (ENSMMUG00000017916)	CNFN (ENSMMUG00000052163)	ENSMMUG00000053094	MEGF8 (ENSMMUG00000014932)	TMEM145 (ENSMMUG00000012170)	PRR19 (ENSMMUG00000012171)	PAFAH1B3 (ENSMMUG00000012172) ##22	CIC (ENSMMUG00000012174)	ERF (ENSMMUG00000014599)	ZNF526 (ENSMMUG00000045335)	DEDD2 (ENSMMUG00000041041)	POU2F2 (ENSMMUG00000013376)	ENSMMUG00000060814	ZNF574 (ENSMMUG00000013374)	GRIK5 (ENSMMUG00000017431)	ATP1A3 (ENSMMUG00000017427)	RABAC1 (ENSMMUG00000017426)	ENSMMUG00000022309	ARHGEF1 (ENSMMUG00000022305)	CD79A (ENSMMUG00000047772)	RPS19 (ENSMMUG00000013429)	DMRTC2 (ENSMMUG00000013426)
Pig-tailed macaque	MODERN SPECIES	218						ENSMNEG00000028622	ENSMNEG00000034629	CEACAM8 (ENSMNEG00000040447)	ENSMNEG00000043260	CXCL17 (ENSMNEG00000034675)	LIPE (ENSMNEG00000040343)	CNFN (ENSMNEG00000033488)	MEGF8 (ENSMNEG00000029250)	TMEM145 (ENSMNEG00000035718)	PRR19 (ENSMNEG00000036706)	PAFAH1B3 (ENSMNEG00000038654) ##22	CIC (ENSMNEG00000032857)	ERF (ENSMNEG00000035901)	GSK3A (ENSMNEG00000038536)	DEDD2 (ENSMNEG00000030378)	POU2F2 (ENSMNEG00000029149)	ENSMNEG00000020419	ZNF574 (ENSMNEG00000034279)	GRIK5 (ENSMNEG00000041919)	ENSMNEG00000033887	ATP1A3 (ENSMNEG00000032260)	RABAC1 (ENSMNEG00000041557)	ERFL (ENSMNEG00000033425)	ARHGEF1 (ENSMNEG00000028757)	CD79A (ENSMNEG00000043118)	RPS19 (ENSMNEG00000012619)
Cercopithecinae_b	ANCESTRAL SPECIES	24	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00510000048142.i.b	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A
Olive baboon	MODERN SPECIES	12	ETHE1 (ENSPANG00000013980)	ENSPANG00000038859	LYPD3 (ENSPANG00000026276)	TEX101 (ENSPANG00000007650)	CD177 (ENSPANG00000002968)	ENSPANG00000003143	ENSPANG00000001269	ENSPANG00000040562	ENSPANG00000005738	CXCL17 (ENSPANG00000011863)	LIPE (ENSPANG00000008662)	CNFN (ENSPANG00000009950)	MEGF8 (ENSPANG00000013862)	TMEM145 (ENSPANG00000007222)	PRR19 (ENSPANG00000010671)	PAFAH1B3 (ENSPANG00000012468) ##22	CIC (ENSPANG00000009039)	ERF (ENSPANG00000003832)	GSK3A (ENSPANG00000012948)	ZNF526 (ENSPANG00000023873)	DEDD2 (ENSPANG00000031170)	POU2F2 (ENSPANG00000008094)	ZNF574 (ENSPANG00000018272)	GRIK5 (ENSPANG00000021116)	ATP1A3 (ENSPANG00000002667)	RABAC1 (ENSPANG00000003146)	ERFL (ENSPANG00000025406)	ARHGEF1 (ENSPANG00000011864)	CD79A (ENSPANG00000013982)	ENSPANG00000008041	DMRTC2 (ENSPANG00000015477)
Cercopithecinae_d	ANCESTRAL SPECIES	84							ENSGT01100000263479.D.a.c.a.b.c.b	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.c.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00900000143631	ENSGT00940000161799	ENSGT00940000158852	ENSGT00510000048142.i.b	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b
Drill	MODERN SPECIES	126			ENSMLEG00000031160	ENSMLEG00000035352	ENSMLEG00000012311	ENSMLEG00000013245	ENSMLEG00000034726	CEACAM8 (ENSMLEG00000043769)	ENSMLEG00000007493	CXCL17 (ENSMLEG00000031431)	LIPE (ENSMLEG00000037329)	CNFN (ENSMLEG00000027949)	MEGF8 (ENSMLEG00000038649)	TMEM145 (ENSMLEG00000034677)	PRR19 (ENSMLEG00000040738)	PAFAH1B3 (ENSMLEG00000016205) ##22	CIC (ENSMLEG00000040615)	ERF (ENSMLEG00000031231)	DEDD2 (ENSMLEG00000030121)	POU2F2 (ENSMLEG00000037537)	ENSMLEG00000006945	ZNF574 (ENSMLEG00000039366)	GRIK5 (ENSMLEG00000036222)	ENSMLEG00000030091	ATP1A3 (ENSMLEG00000008811)	RABAC1 (ENSMLEG00000036383)	ERFL (ENSMLEG00000041558)	ARHGEF1 (ENSMLEG00000028557)	CD79A (ENSMLEG00000044014)	RPS19 (ENSMLEG00000031613)	DMRTC2 (ENSMLEG00000024359)
Sooty mangabey	MODERN SPECIES	274					ENSCATG00000034767	ENSCATG00000035421	ENSCATG00000038844	CEACAM8 (ENSCATG00000036104)	ENSCATG00000036965	CXCL17 (ENSCATG00000040602)	LIPE (ENSCATG00000040670)	CNFN (ENSCATG00000038745)	MEGF8 (ENSCATG00000004269)	TMEM145 (ENSCATG00000037682)	PRR19 (ENSCATG00000040460)	PAFAH1B3 (ENSCATG00000040291) ##22	CIC (ENSCATG00000039935)	ERF (ENSCATG00000031239)	GSK3A (ENSCATG00000045265)	DEDD2 (ENSCATG00000040748)	POU2F2 (ENSCATG00000037147)	ENSCATG00000043188	ZNF574 (ENSCATG00000037432)	ENSCATG00000034830	GRIK5 (ENSCATG00000030312)	ATP1A3 (ENSCATG00000040558)	RABAC1 (ENSCATG00000041833)	ERFL (ENSCATG00000030550)	ARHGEF1 (ENSCATG00000031490)	CD79A (ENSCATG00000012116)	RPS19 (ENSCATG00000033159)
Vervet Monkey	MODERN SPECIES	25	XRCC1 (ENSCSAG00000003402)	ZNF575 (ENSCSAG00000003403)	ETHE1 (ENSCSAG00000003404)	ENSCSAG00000003408	LYPD3 (ENSCSAG00000003412)	TEX101 (ENSCSAG00000003415)	CD177 (ENSCSAG00000003420)	CEACAM8 (ENSCSAG00000003425)	ENSCSAG00000003432	CXCL17 (ENSCSAG00000003434)	LIPE (ENSCSAG00000003440)	CNFN (ENSCSAG00000003441)	MEGF8 (ENSCSAG00000003447)	TMEM145 (ENSCSAG00000003454)	PRR19 (ENSCSAG00000003457)	PAFAH1B3 (ENSCSAG00000003459) ##22	ENSCSAG00000003462	ERF (ENSCSAG00000003467)	GSK3A (ENSCSAG00000003471)	ZNF526 (ENSCSAG00000019619)	DEDD2 (ENSCSAG00000003475)	POU2F2 (ENSCSAG00000003479)	ZNF574 (ENSCSAG00000019618)	GRIK5 (ENSCSAG00000003483)	ATP1A3 (ENSCSAG00000003487)	RABAC1 (ENSCSAG00000003491)	ARHGEF1 (ENSCSAG00000003495)	CD79A (ENSCSAG00000003499)	RPS19 (ENSCSAG00000003501)	DMRTC2 (ENSCSAG00000003507)	ENSCSAG00000003511
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Gibbon	MODERN SPECIES	7	ENSNLEG00000001299	ENSNLEG00000032412	ENSNLEG00000030339	ENSNLEG00000032602	ENSNLEG00000032718	ENSNLEG00000028913	ENSNLEG00000028328	ENSNLEG00000010828	CEACAM8 (ENSNLEG00000010809)	ENSNLEG00000010744	CXCL17 (ENSNLEG00000010731)	LIPE (ENSNLEG00000010707)	CNFN (ENSNLEG00000010692)	MEGF8 (ENSNLEG00000026558)	TMEM145 (ENSNLEG00000010654)	PAFAH1B3 (ENSNLEG00000010622) ##22	CIC (ENSNLEG00000010614)	GSK3A (ENSNLEG00000010609)	ZNF526 (ENSNLEG00000018866)	DEDD2 (ENSNLEG00000010600)	ENSNLEG00000010575	ENSNLEG00000035078	GRIK5 (ENSNLEG00000026639)	ATP1A3 (ENSNLEG00000013414)	RABAC1 (ENSNLEG00000013444)	ERFL (ENSNLEG00000013477)	ENSNLEG00000013480	CD79A (ENSNLEG00000013502)	ENSNLEG00000027781	DMRTC2 (ENSNLEG00000013548)	LYPD4 (ENSNLEG00000013578)
Hominidae	ANCESTRAL SPECIES		ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.b	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.e	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	10	ENSPPYG00000031180	ENSPPYG00000010053	ENSPPYG00000032845	PSG8 (ENSPPYG00000035850)	ENSPPYG00000041166	ENSPPYG00000036327	ENSPPYG00000010537	CEACAM8 (ENSPPYG00000010023)	CEACAM1 (ENSPPYG00000010050)	CXCL17 (ENSPPYG00000031148)	LIPE (ENSPPYG00000010048)	ENSPPYG00000041577	MEGF8 (ENSPPYG00000031085)	TMEM145 (ENSPPYG00000010044)	PRR19 (ENSPPYG00000010043)	ENSPPYG00000010042 ##22	ERF (ENSPPYG00000010040)	GSK3A (ENSPPYG00000010039)	ZNF526 (ENSPPYG00000010038)	DEDD2 (ENSPPYG00000010037)	POU2F2 (ENSPPYG00000010036)	ZNF574 (ENSPPYG00000010035)	GRIK5 (ENSPPYG00000010034)	ATP1A3 (ENSPPYG00000010033)	RABAC1 (ENSPPYG00000033290)	ERFL (ENSPPYG00000030541)	ARHGEF1 (ENSPPYG00000010031)	CD79A (ENSPPYG00000010030)	RPS19 (ENSPPYG00000010029)	DMRTC2 (ENSPPYG00000010028)	LYPD4 (ENSPPYG00000010027)
Orangutan	MODERN SPECIES	137																PAFAH1B3 (ENSPPYG00000035930) ##22	ENSPPYG00000010041
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00530000063351.b	ENSGT00530000063351.a.a.s.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.c	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.e	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00910000148701	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Gorilla	MODERN SPECIES	10	TEX101 (ENSGGOG00000016818)	ENSGGOG00000014979	PSG4 (ENSGGOG00000006433)	ENSGGOG00000012005	ENSGGOG00000010966	CEACAM8 (ENSGGOG00000012684)	ENSGGOG00000005936	ENSGGOG00000039327	CXCL17 (ENSGGOG00000000763)	LIPE (ENSGGOG00000000761)	CNFN (ENSGGOG00000000760)	MEGF8 (ENSGGOG00000000758)	TMEM145 (ENSGGOG00000024254)	ENSGGOG00000037328	PRR19 (ENSGGOG00000013249)	PAFAH1B3 (ENSGGOG00000013243) ##22	CIC (ENSGGOG00000000192)	ERF (ENSGGOG00000004656)	GSK3A (ENSGGOG00000004649)	DEDD2 (ENSGGOG00000009107)	POU2F2 (ENSGGOG00000011088)	ZNF574 (ENSGGOG00000027095)	GRIK5 (ENSGGOG00000013654)	ATP1A3 (ENSGGOG00000005963)	RABAC1 (ENSGGOG00000003948)	ERFL (ENSGGOG00000022280)	ARHGEF1 (ENSGGOG00000015282)	CD79A (ENSGGOG00000015280)	RPS19 (ENSGGOG00000015279)	DMRTC2 (ENSGGOG00000015274)	LYPD4 (ENSGGOG00000010514)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.c	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.b.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.e	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00910000148701	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904
Human	MODERN SPECIES	10	PSG2 (ENSG00000242221)	PSG11 (ENSG00000243130)	PSG7 (ENSG00000221878)	PSG6 (ENSG00000170848)	PSG1 (ENSG00000231924)	PSG8 (ENSG00000124467)	PSG3 (ENSG00000221826)	CEACAM8 (ENSG00000124469)	CEACAM1 (ENSG00000079385)	CXCL17 (ENSG00000189377)	LIPE (ENSG00000079435)	CNFN (ENSG00000105427)	MEGF8 (ENSG00000105429)	TMEM145 (ENSG00000167619)	PRR19 (ENSG00000188368)	PAFAH1B3 (ENSG00000079462) ##22	CIC (ENSG00000079432)	ERF (ENSG00000105722)	ENSG00000268643	GSK3A (ENSG00000105723)	ZNF526 (ENSG00000167625)	ENSG00000288671	DEDD2 (ENSG00000160570)	POU2F2 (ENSG00000028277)	ZNF574 (ENSG00000105732)	GRIK5 (ENSG00000105737)	ATP1A3 (ENSG00000105409)	RABAC1 (ENSG00000105404)	ERFL (ENSG00000268041)	ARHGEF1 (ENSG00000076928)	CD79A (ENSG00000105369)
Pan	ANCESTRAL SPECIES	9	ENSGT00530000063351.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.b.b	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.b.d.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.b.a.a	ENSGT01100000263479.D.a.c.a.b.d.a.b.b.a.a.a.a.a.a.a	ENSGT01100000263479.D.a.c.a.a.a.b	ENSGT01100000263479.D.a.c.a.a.a.a.f.b.a	ENSGT00940000156165.`b.b	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00910000148701	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000163212.A	ENSGT00940000161180	ENSGT00940000154363.A	ENSGT00390000013102.e.b	ENSGT00940000161904	ENSGT00530000063351.a.b
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000045990	ENSPTRG00000011067	ENSPTRG00000050518	ENSPTRG00000045330	ENSPTRG00000048170	CEACAM8 (ENSPTRG00000011032)	CEACAM1 (ENSPTRG00000011061)	ENSPTRG00000038866	CXCL17 (ENSPTRG00000011060)	LIPE (ENSPTRG00000011058)	CNFN (ENSPTRG00000011057)	MEGF8 (ENSPTRG00000011055)	TMEM145 (ENSPTRG00000011054)	ENSPTRG00000052388	PRR19 (ENSPTRG00000011053)	PAFAH1B3 (ENSPTRG00000011052) ##22	CIC (ENSPTRG00000011051)	ERF (ENSPTRG00000028999)	GSK3A (ENSPTRG00000011049)	DEDD2 (ENSPTRG00000011046)	POU2F2 (ENSPTRG00000011045)	ZNF574 (ENSPTRG00000011044)	GRIK5 (ENSPTRG00000011042)	ATP1A3 (ENSPTRG00000011041)	RABAC1 (ENSPTRG00000011040)	ERFL (ENSPTRG00000045867)	ARHGEF1 (ENSPTRG00000011039)	CD79A (ENSPTRG00000011038)	RPS19 (ENSPTRG00000011037)	DMRTC2 (ENSPTRG00000011036)	LYPD4 (ENSPTRG00000011035)
Bonobo	MODERN SPECIES	10	ENSPPAG00000031954	PSG1 (ENSPPAG00000036862)	ENSPPAG00000036685	ENSPPAG00000000864	PSG3 (ENSPPAG00000028128)	CEACAM8 (ENSPPAG00000038978)	ENSPPAG00000034140	ENSPPAG00000026064	CXCL17 (ENSPPAG00000000614)	LIPE (ENSPPAG00000042254)	CNFN (ENSPPAG00000037166)	MEGF8 (ENSPPAG00000026919)	TMEM145 (ENSPPAG00000038297)	ENSPPAG00000018447	PRR19 (ENSPPAG00000022293)	ENSPPAG00000026311 ##22	CIC (ENSPPAG00000034281)	ERF (ENSPPAG00000027990)	GSK3A (ENSPPAG00000036611)	DEDD2 (ENSPPAG00000042718)	POU2F2 (ENSPPAG00000038336)	ZNF574 (ENSPPAG00000005476)	GRIK5 (ENSPPAG00000035623)	ATP1A3 (ENSPPAG00000039434)	RABAC1 (ENSPPAG00000038053)	ERFL (ENSPPAG00000032217)	ARHGEF1 (ENSPPAG00000039794)	CD79A (ENSPPAG00000038624)	RPS19 (ENSPPAG00000041030)	ENSPPAG00000042029	LYPD4 (ENSPPAG00000008791)
Atlantogenata	ANCESTRAL SPECIES	142								ENSGT00530000063351.a.a	ENSGT01100000263479.D.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549
Xenarthra	ANCESTRAL SPECIES	468													ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	2499			FERD3L (ENSDNOG00000037813)	TWIST1 (ENSDNOG00000037354)	HDAC9 (ENSDNOG00000049792)	SNX13 (ENSDNOG00000016319)	AHR (ENSDNOG00000003198)	ENSDNOG00000038850	AGR2 (ENSDNOG00000011923)	TSPAN13 (ENSDNOG00000011917)	BZW2 (ENSDNOG00000001663)	ANKMY2 (ENSDNOG00000047023)	ENSDNOG00000041863	LRRC72 (ENSDNOG00000001657)	SOSTDC1 (ENSDNOG00000037656)	ENSDNOG00000033359 ##22	CRPPA (ENSDNOG00000025297)	ENSDNOG00000033934	MEOX2 (ENSDNOG00000008959)	ENSDNOG00000043379
Armadillo	MODERN SPECIES	2010													MEGF8 (ENSDNOG00000032706)	TMEM145 (ENSDNOG00000031828)	PRR19 (ENSDNOG00000025300)	PAFAH1B3 (ENSDNOG00000002870) ##22	CIC (ENSDNOG00000047657)	GSK3A (ENSDNOG00000004543)	ZNF526 (ENSDNOG00000035898)	DEDD2 (ENSDNOG00000047718)	POU2F2 (ENSDNOG00000046180)	ZNF574 (ENSDNOG00000033618)
Afrotheria	ANCESTRAL SPECIES	22	ENSGT00510000048991	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549
Tenrec	MODERN SPECIES	8200															ENSETEG00000017280	PAFAH1B3 (ENSETEG00000017278) ##22	ENSETEG00000017271
Afrotheria_a	ANCESTRAL SPECIES	21	ENSGT00510000048991	ENSGT00730000111229	ENSGT00390000004140.a	ENSGT00940000162551	ENSGT00940000159046.C	ENSGT00940000160803	ENSGT00940000153599.B.a	ENSGT00530000063351.a.a	ENSGT01100000263479.D.a	ENSGT00390000002861	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00390000010703	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549
Elephant	MODERN SPECIES	375	ENSLAFG00000022948	ENSLAFG00000031988	ENSLAFG00000030722	ENSLAFG00000028809	ENSLAFG00000026795	ENSLAFG00000026510	ENSLAFG00000011795	ENSLAFG00000027437	ENSLAFG00000017467	CXCL17 (ENSLAFG00000016397)	LIPE (ENSLAFG00000028682)	CNFN (ENSLAFG00000022262)	ENSLAFG00000027309	TMEM145 (ENSLAFG00000023281)	PRR19 (ENSLAFG00000029797)	PAFAH1B3 (ENSLAFG00000031937) ##22	ERF (ENSLAFG00000021591)	GSK3A (ENSLAFG00000015460)	DEDD2 (ENSLAFG00000030947)	POU2F2 (ENSLAFG00000009508)	ZNF574 (ENSLAFG00000000308)	GRIK5 (ENSLAFG00000007733)	ATP1A3 (ENSLAFG00000003415)	RABAC1 (ENSLAFG00000011334)
Hyrax	MODERN SPECIES	4397										CXCL17 (ENSPCAG00000017044)	LIPE (ENSPCAG00000017036)	CNFN (ENSPCAG00000017035)	MEGF8 (ENSPCAG00000017025)	TMEM145 (ENSPCAG00000017017)	PRR19 (ENSPCAG00000017015)	PAFAH1B3 (ENSPCAG00000017013) ##22	CIC (ENSPCAG00000017001)	ERF (ENSPCAG00000016986)	GSK3A (ENSPCAG00000016967)	ZNF526 (ENSPCAG00000016959)	DEDD2 (ENSPCAG00000016955)
Platypus	MODERN SPECIES	16	BCAM (ENSOANG00000008975)	CBLC (ENSOANG00000046609)	BCL3 (ENSOANG00000046426)	CEACAM16 (ENSOANG00000012180)	ENSOANG00000050885	ENSOANG00000049127	ENSOANG00000044640	ENSOANG00000009705	ENSOANG00000044064	LIPE (ENSOANG00000039638)	ENSOANG00000041365	CNFN (ENSOANG00000004593)	MEGF8 (ENSOANG00000037647)	TMEM145 (ENSOANG00000012875)	ENSOANG00000037208	PAFAH1B3 (ENSOANG00000021299) ##22	CIC (ENSOANG00000036051)	ENSOANG00000045058	GSK3A (ENSOANG00000037968)	DEDD2 (ENSOANG00000036383)	POU2F2 (ENSOANG00000044045)	ZNF574 (ENSOANG00000047070)	GRIK5 (ENSOANG00000012545)	ATP1A3 (ENSOANG00000042242)	ENSOANG00000045537	ENSOANG00000013662	ARHGEF1 (ENSOANG00000013661)	CD79A (ENSOANG00000039470)	RPS19 (ENSOANG00000013660)	ENSOANG00000013938	ENSOANG00000013939
Anura	ANCESTRAL SPECIES	180										ENSGT01010000228732	ENSGT00730000111056	ENSGT00940000161202.b	ENSGT00940000160262	ENSGT00940000153981.B	ENSGT00940000163576	ENSGT00950000183199.a.b ##22	ENSGT00940000159960	ENSGT00940000157292	ENSGT00520000055635.c.b	ENSGT00940000162624	ENSGT00390000008714.b	ENSGT00940000160115	ENSGT00940000161799	ENSGT00940000158852	ENSGT00940000160476	ENSGT00390000010549	ENSGT00940000161180	ENSGT00940000154363.A
Frog	MODERN SPECIES	7	ENSXETG00000045717	ENSXETG00000041430	ENSXETG00000047761	ENSXETG00000046739	ENSXETG00000045122	ENSXETG00000044330	lipe (ENSXETG00000012042)	ENSXETG00000037499	cnfn.2 (ENSXETG00000032177)	cnfn.1 (ENSXETG00000026058)	cnfn.3 (ENSXETG00000012044)	ENSXETG00000038844	megf8 (ENSXETG00000034254)	tmem145 (ENSXETG00000012053)	tlr21 (ENSXETG00000032848)	pafah1b3 (ENSXETG00000012063) ##22	cic (ENSXETG00000030813)	erf (ENSXETG00000049427)	gsk3a (ENSXETG00000012072)	znf526 (ENSXETG00000033486)	dedd2 (ENSXETG00000012093)	pou2f2 (ENSXETG00000033156)	znf574 (ENSXETG00000027536)	grik5 (ENSXETG00000031503)	atp1a3 (ENSXETG00000023811)	rabac1 (ENSXETG00000023854)	ENSXETG00000040615	arhgef1 (ENSXETG00000033428)	cd79a (ENSXETG00000030585)	ENSXETG00000039529	ENSXETG00000040338
Leishan spiny toad	MODERN SPECIES	2	ENSLLEG00000021415	ENSLLEG00000021365	NR1H2 (ENSLLEG00000021278)	ENSLLEG00000021259	ENSLLEG00000020686	ENSLLEG00000020570	MED25 (ENSLLEG00000020334)	ENSLLEG00000020298	POLD1 (ENSLLEG00000017518)	ENSLLEG00000017208	AP2A1 (ENSLLEG00000016297)	ENSLLEG00000015796	ENSLLEG00000015728	ENSLLEG00000015628	ENSLLEG00000015455	PAFAH1B3 (ENSLLEG00000015175) ##22	CIC (ENSLLEG00000014745)	ENSLLEG00000014713	ENSLLEG00000014609	GSK3A (ENSLLEG00000014401)	ENSLLEG00000014367	ZNF526 (ENSLLEG00000014314)	DEDD2 (ENSLLEG00000014259)	POU2F2 (ENSLLEG00000013736)	ENSLLEG00000013650	ZNF574 (ENSLLEG00000013615)	ENSLLEG00000013600	ENSLLEG00000013575	GRIK5 (ENSLLEG00000013044)	ENSLLEG00000012995	ENSLLEG00000012947
Coelacanth	MODERN SPECIES	644															tlr21 (ENSLACG00000001078)	PAFAH1B3 (ENSLACG00000002167) ##22	CIC (ENSLACG00000002764)	ERF (ENSLACG00000006078)	GSK3A (ENSLACG00000006537)	ZNF526 (ENSLACG00000022108)	DEDD2 (ENSLACG00000007356)	POU2F2 (ENSLACG00000010150)	ENSLACG00000010744	GRIK5 (ENSLACG00000011972)	ATP1A3 (ENSLACG00000012768)	RABAC1 (ENSLACG00000013016)	ENSLACG00000013158	ENSLACG00000013285	ENSLACG00000013391	ENSLACG00000013519	ENSLACG00000013642
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00950000183199.a.b ##22
Lamprey	MODERN SPECIES	2075															ENSPMAG00000001401	pafah1b3 (ENSPMAG00000001410) ##22	ENSPMAG00000001413
Ciona	ANCESTRAL SPECIES																	ENSGT00950000183199 #22
Ciona savignyi	MODERN SPECIES	214	ENSCSAVG00000007414	ENSCSAVG00000007405	ENSCSAVG00000007368	ENSCSAVG00000007360	ENSCSAVG00000007345	ENSCSAVG00000007344	ENSCSAVG00000007295	ENSCSAVG00000007291	ENSCSAVG00000007271	ENSCSAVG00000007264	ENSCSAVG00000007242	ENSCSAVG00000007218	ENSCSAVG00000007215	ENSCSAVG00000007185	ENSCSAVG00000007182	ENSCSAVG00000007161 #22	ENSCSAVG00000007148	ENSCSAVG00000007138	ENSCSAVG00000006910	ENSCSAVG00000006872	ENSCSAVG00000006870	ENSCSAVG00000006852	ENSCSAVG00000006851	ENSCSAVG00000006436	ENSCSAVG00000006434	ENSCSAVG00000006404	ENSCSAVG00000006400	ENSCSAVG00000006394	ENSCSAVG00000006392	ENSCSAVG00000006334	ENSCSAVG00000006330
Ciona intestinalis	MODERN SPECIES	8	ENSCING00000001383	ENSCING00000023270	ENSCING00000018140	ENSCING00000001388	ENSCING00000001396	ENSCING00000022532	ENSCING00000010119	ENSCING00000020831	ENSCING00000004184	ENSCING00000004187	ENSCING00000004176	ENSCING00000021691	ENSCING00000023821	ENSCING00000013607	ENSCING00000020344	ENSCING00000013608 #22	ENSCING00000013609	ENSCING00000024933	ENSCING00000004211	ENSCING00000004239	ENSCING00000019644	ENSCING00000023451	ENSCING00000004272	ENSCING00000013611	ENSCING00000021860	ENSCING00000021428	ENSCING00000020079	ENSCING00000013612	ENSCING00000013613	ENSCING00000004275	ENSCING00000025067
Ecdysozoa	ANCESTRAL SPECIES																	ENSGT00950000183199 #22
Fruitfly	MODERN SPECIES	26	CG15914 (FBgn0030700)	UBL3 (FBgn0026076)	sun (FBgn0014391)	CG8578 (FBgn0030699)	ArgRS (FBgn0027093)	CG8565 (FBgn0030697)	Chc (FBgn0000319)	CG8509 (FBgn0030696)	sd (FBgn0003345)	PGRP-LE (FBgn0030695)	CG15602 (FBgn0030694)	sordd2 (FBgn0052581)	sordd1 (FBgn0030693)	Rhp (FBgn0026374)	mRpS30 (FBgn0030692)	Paf-AHalpha (FBgn0025809) #22	Efhc1.1 (FBgn0030691)	CG43673 (FBgn0263748)	CG43672 (FBgn0263747)	CG33172 (FBgn0053172)	CG8952 (FBgn0030688)	Polr3A (FBgn0030687)	mRpL3 (FBgn0030686)	CG8260 (FBgn0030684)	Graf (FBgn0030685)	Mvd (FBgn0030683)	CCT6 (FBgn0027329)	CG8944 (FBgn0030680)	CG8206 (FBgn0030679)	CG11679 (FBgn0030678)	Arp6 (FBgn0011741)