Gnathostomata	ANCESTRAL SPECIES	415															ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30
Euteleostomi	ANCESTRAL SPECIES	144			ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00390000010866 #13	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b
Sarcopterygii	ANCESTRAL SPECIES	169				ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b
Tetrapoda	ANCESTRAL SPECIES	97				ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Mammalia	ANCESTRAL SPECIES	65	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Theria	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Eutheria	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Primates	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Simiiformes	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Hominidae	ANCESTRAL SPECIES	7	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866.i.a #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866.i.a #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Pan	ANCESTRAL SPECIES	21	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531.g #7	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866.i.a #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b.l #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Chimpanzee	MODERN SPECIES	18	ENSPTRG00000044900 #7	TERT (ENSPTRG00000016696) #8	SLC6A3 (ENSPTRG00000016699) #9	ENSPTRG00000045264 #10	LPCAT1 (ENSPTRG00000016701) #11	ENSPTRG00000051244 #12	MRPL36 (ENSPTRG00000016705) #13	NDUFS6 (ENSPTRG00000016706) #14	IRX4 (ENSPTRG00000046893) #15	IRX2 (ENSPTRG00000016708) #16	IRX2-DT (ENSPTRG00000028783) #17	ENSPTRG00000050428 #18	IRX1 (ENSPTRG00000016709) #19	ENSPTRG00000048810 #20	ADAMTS16 (ENSPTRG00000016710) #21	ICE1 (ENSPTRG00000016711) #22	MED10 (ENSPTRG00000016713) #23	UBE2QL1 (ENSPTRG00000033811) #24	NSUN2 (ENSPTRG00000016715) #25	SRD5A1 (ENSPTRG00000016716) #26	TENT4A (ENSPTRG00000016717) #27	ENSPTRG00000051937 #28	ADCY2 (ENSPTRG00000049665) #29	CFAP90 (ENSPTRG00000034032) #30	FASTKD3 (ENSPTRG00000016720) #31	MTRR (ENSPTRG00000016721) #32	SEMA5A (ENSPTRG00000016722) #33	TAS2R1 (ENSPTRG00000016723) #34	ATPSCKMT (ENSPTRG00000016724) #35	CCT5 (ENSPTRG00000016725) #36	CMBL (ENSPTRG00000045109) #37
Bonobo	MODERN SPECIES	18	SLC12A7 (ENSPPAG00000029396)	SLC6A19 (ENSPPAG00000038033)	SLC6A18 (ENSPPAG00000031319)	TERT (ENSPPAG00000029560) #7	CLPTM1L (ENSPPAG00000015621)	SLC6A3 (ENSPPAG00000027557) #9	LPCAT1 (ENSPPAG00000041910) #11	MRPL36 (ENSPPAG00000012362) #13	ENSPPAG00000038799 #14	IRX4 (ENSPPAG00000008767) #15	ENSPPAG00000035929 #17	ENSPPAG00000031042 #18	IRX1 (ENSPPAG00000038233) #19	ENSPPAG00000039847 #20	ADAMTS16 (ENSPPAG00000041798) #21	ICE1 (ENSPPAG00000039831) #22	MED10 (ENSPPAG00000031009) #23	NSUN2 (ENSPPAG00000036124) #25	SRD5A1 (ENSPPAG00000038450) #26	ENSPPAG00000034356 #27	ADCY2 (ENSPPAG00000035118) #29	CFAP90 (ENSPPAG00000041883) #30	FASTKD3 (ENSPPAG00000036254) #31	MTRR (ENSPPAG00000043987) #32	SEMA5A (ENSPPAG00000043389) #33	TAS2R1 (ENSPPAG00000010439) #34	ATPSCKMT (ENSPPAG00000042235) #35	CCT5 (ENSPPAG00000029058) #36	CMBL (ENSPPAG00000033069) #37	MARCHF6 (ENSPPAG00000036651)	ROPN1L (ENSPPAG00000027569)
Human	MODERN SPECIES	17	TRIP13 (ENSG00000071539)	NKD2 (ENSG00000145506)	SLC12A7 (ENSG00000113504)	SLC6A19 (ENSG00000174358)	SLC6A18 (ENSG00000164363)	TERT (ENSG00000164362) #8	CLPTM1L (ENSG00000049656)	SLC6A3 (ENSG00000142319) #9	LPCAT1 (ENSG00000153395) #11	MRPL36 (ENSG00000171421) ##13	NDUFS6 (ENSG00000145494) #14	IRX4 (ENSG00000113430) #15	IRX2 (ENSG00000170561) #16	IRX1 (ENSG00000170549) #19	ADAMTS16 (ENSG00000145536) #21	ICE1 (ENSG00000164151) #22	MED10 (ENSG00000133398) #23	UBE2QL1 (ENSG00000215218) #24	NSUN2 (ENSG00000037474) #25	SRD5A1 (ENSG00000145545) #26	TENT4A (ENSG00000112941) #27	ADCY2 (ENSG00000078295) #29	CFAP90 (ENSG00000215217) #30	MTRR (ENSG00000124275) #32	FASTKD3 (ENSG00000124279) #31	SEMA5A (ENSG00000112902) #33	TAS2R1 (ENSG00000169777) #34	ATPSCKMT (ENSG00000150756) #35	CCT5 (ENSG00000150753) #36	CMBL (ENSG00000164237) #37	MARCHF6 (ENSG00000145495)
Gorilla	MODERN SPECIES	8	ENSGGOG00000038696	TERT (ENSGGOG00000002607) #8	CLPTM1L (ENSGGOG00000015622)	SLC6A3 (ENSGGOG00000015631) #9	LPCAT1 (ENSGGOG00000015639) #11	ENSGGOG00000016949 #13	NDUFS6 (ENSGGOG00000016951) #14	ENSGGOG00000039292 #15	IRX2 (ENSGGOG00000015712) #16	ENSGGOG00000015708 #17	ENSGGOG00000040574 #18	ENSGGOG00000042850 #19	ENSGGOG00000042745 #19	ENSGGOG00000039993 #20	ADAMTS16 (ENSGGOG00000014865) #21	ICE1 (ENSGGOG00000025867) #22	MED10 (ENSGGOG00000003086) #23	UBE2QL1 (ENSGGOG00000024242) #24	NSUN2 (ENSGGOG00000016583) #25	SRD5A1 (ENSGGOG00000016593) #26	TENT4A (ENSGGOG00000013866) #27	ENSGGOG00000025545 #28	ENSGGOG00000043809	ADCY2 (ENSGGOG00000011188) #29	CFAP90 (ENSGGOG00000011202) #30	FASTKD3 (ENSGGOG00000015994) #31	MTRR (ENSGGOG00000000958) #32	SEMA5A (ENSGGOG00000011428) #33	TAS2R1 (ENSGGOG00000013791) #34	ATPSCKMT (ENSGGOG00000014109) #35	CCT5 (ENSGGOG00000024064) #36
Orangutan	MODERN SPECIES	18	SLC6A19 (ENSPPYG00000015313)	SLC6A18 (ENSPPYG00000015314)	ENSPPYG00000015315 #8	ENSPPYG00000039637 #8	CLPTM1L (ENSPPYG00000015316)	SLC6A3 (ENSPPYG00000015318) #9	LPCAT1 (ENSPPYG00000015319) #11	ENSPPYG00000031434	MRPL36 (ENSPPYG00000015322) #13	ENSPPYG00000015323 #14	IRX4 (ENSPPYG00000015324) #15	IRX2 (ENSPPYG00000015325) #16	ENSPPYG00000015326 #17	ENSPPYG00000015327 #19	ADAMTS16 (ENSPPYG00000015328) #21	ICE1 (ENSPPYG00000015329) #22	MED10 (ENSPPYG00000015330) #23	UBE2QL1 (ENSPPYG00000015331) #24	NSUN2 (ENSPPYG00000015332) #25	SRD5A1 (ENSPPYG00000031135) #26	TENT4A (ENSPPYG00000015334) #27	ADCY2 (ENSPPYG00000015335) #29	ENSPPYG00000015336 #30	FASTKD3 (ENSPPYG00000015337) #31	MTRR (ENSPPYG00000015338) #32	SEMA5A (ENSPPYG00000015339) #33	TAS2R1 (ENSPPYG00000015340) #34	ATPSCKMT (ENSPPYG00000015341) #35	CCT5 (ENSPPYG00000015342) #36	CMBL (ENSPPYG00000015343) #37	MARCHF6 (ENSPPYG00000015344)
Gibbon	MODERN SPECIES	21	ENSNLEG00000011012	SLC12A7 (ENSNLEG00000011016)	SLC6A19 (ENSNLEG00000026638)	SLC6A18 (ENSNLEG00000011105)	TERT (ENSNLEG00000011118) #8	CLPTM1L (ENSNLEG00000011133)	SLC6A3 (ENSNLEG00000011157) #9	LPCAT1 (ENSNLEG00000011167) #11	MRPL36 (ENSNLEG00000011197) #13	ENSNLEG00000011199 #14	ENSNLEG00000011213 #15	IRX2 (ENSNLEG00000011219) #16	ENSNLEG00000011229 #17	ENSNLEG00000027652 #18	ADAMTS16 (ENSNLEG00000011241) #21	ICE1 (ENSNLEG00000011296) #22	MED10 (ENSNLEG00000034999) #23	NSUN2 (ENSNLEG00000011344) #25	ENSNLEG00000011414 ##26	TENT4A (ENSNLEG00000011434) #27	ADCY2 (ENSNLEG00000011468) #29	CFAP90 (ENSNLEG00000011506) #30	FASTKD3 (ENSNLEG00000011510) #31	MTRR (ENSNLEG00000011522) #32	SEMA5A (ENSNLEG00000011566) #33	ATPSCKMT (ENSNLEG00000027427) #35	CCT5 (ENSNLEG00000032559) #36	CMBL (ENSNLEG00000011601) #37	MARCHF6 (ENSNLEG00000011608)	ROPN1L (ENSNLEG00000011687)	ENSNLEG00000032298
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00960000188468	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a.k.a #25	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00960000188468	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00890000139491.f #18	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.k.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00960000188468	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT01100000263493.a.b.a.b.a.b.a.a.a.a.b	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a.k.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37
Rhesus	MODERN SPECIES	16	SLC6A18 (ENSMMUG00000010938)	TERT (ENSMMUG00000010940) #8	CLPTM1L (ENSMMUG00000005193)	SLC6A3 (ENSMMUG00000005198) #9	LPCAT1 (ENSMMUG00000005199) #11	ENSMMUG00000059497	MRPL36 (ENSMMUG00000004451) #13	NDUFS6 (ENSMMUG00000004447) #14	IRX4 (ENSMMUG00000004220) #15	ENSMMUG00000057427	IRX2 (ENSMMUG00000005802) #16	ENSMMUG00000015889 #17	ENSMMUG00000050148	IRX1 (ENSMMUG00000002613) #19	ADAMTS16 (ENSMMUG00000019205) #21	ICE1 (ENSMMUG00000001063) #22	ENSMMUG00000064022	MED10 (ENSMMUG00000051644) #23	UBE2QL1 (ENSMMUG00000055877) #24	NSUN2 (ENSMMUG00000002561) #25	SRD5A1 (ENSMMUG00000013186) #26	TENT4A (ENSMMUG00000013189) #27	ENSMMUG00000058512	ENSMMUG00000063097	ADCY2 (ENSMMUG00000018742) #29	CFAP90 (ENSMMUG00000018745) #30	FASTKD3 (ENSMMUG00000018746) #31	MTRR (ENSMMUG00000018747) #32	SEMA5A (ENSMMUG00000020160) #33	TAS2R1 (ENSMMUG00000058066) #34	ENSMMUG00000064218
Crab-eating macaque	MODERN SPECIES	16	TERT (ENSMFAG00000033142) #8	CLPTM1L (ENSMFAG00000039815)	ENSMFAG00000065048	SLC6A3 (ENSMFAG00000003977) #9	ENSMFAG00000064340	ENSMFAG00000047980	ENSMFAG00000049680 #13	NDUFS6 (ENSMFAG00000032708) #14	IRX4 (ENSMFAG00000044841) #15	IRX2 (ENSMFAG00000064595) #16	ENSMFAG00000047364	ENSMFAG00000055380	IRX1 (ENSMFAG00000001989) #19	ENSMFAG00000052395 #20	ADAMTS16 (ENSMFAG00000000579) #21	ICE1 (ENSMFAG00000037172) #22	MED10 (ENSMFAG00000036824) #23	ENSMFAG00000054504	UBE2QL1 (ENSMFAG00000050565) #24	NSUN2 (ENSMFAG00000045240) #25	SRD5A1 (ENSMFAG00000002749) #26	TENT4A (ENSMFAG00000038658) #27	ENSMFAG00000056143	ENSMFAG00000060338	ENSMFAG00000056296	ADCY2 (ENSMFAG00000001655) #29	ENSMFAG00000051771	CFAP90 (ENSMFAG00000036254) #30	FASTKD3 (ENSMFAG00000040312) #31	MTRR (ENSMFAG00000036712) #32	SEMA5A (ENSMFAG00000038895) #33
Pig-tailed macaque	MODERN SPECIES	156													IRX1 (ENSMNEG00000030402) #19	ENSMNEG00000008964 #20	ADAMTS16 (ENSMNEG00000038384) #21	ICE1 (ENSMNEG00000035013) #22	MED10 (ENSMNEG00000030169) #23	UBE2QL1 (ENSMNEG00000041286) #24	ENSMNEG00000037437	NSUN2 (ENSMNEG00000033485) #25	SRD5A1 (ENSMNEG00000040802) #26	TENT4A (ENSMNEG00000029090) #27	ADCY2 (ENSMNEG00000045116) #29	CFAP90 (ENSMNEG00000036392) #30	FASTKD3 (ENSMNEG00000017265) #31	MTRR (ENSMNEG00000043016) #32	SEMA5A (ENSMNEG00000043946) #33	ENSMNEG00000041629	ATPSCKMT (ENSMNEG00000029572) #35	CCT5 (ENSMNEG00000037967) #36	CMBL (ENSMNEG00000015077) #37
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00940000153875.c	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00960000188468	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37
Olive baboon	MODERN SPECIES	15	SLC6A18 (ENSPANG00000014913)	SLC6A19 (ENSPANG00000012179)	SLC12A7 (ENSPANG00000025613)	NKD2 (ENSPANG00000012309)	TRIP13 (ENSPANG00000020838)	BRD9 (ENSPANG00000004217)	ENSPANG00000023865	MRPL36 (ENSPANG00000046315) #13	NDUFS6 (ENSPANG00000021407) #14	IRX4 (ENSPANG00000014386) #15	ENSPANG00000039393	IRX2 (ENSPANG00000003730) #16	ENSPANG00000004028 #17	IRX1 (ENSPANG00000019076) #19	ADAMTS16 (ENSPANG00000014911) #21	ICE1 (ENSPANG00000050694) #22	MED10 (ENSPANG00000016714) #23	UBE2QL1 (ENSPANG00000015779) #24	NSUN2 (ENSPANG00000004215) #25	SRD5A1 (ENSPANG00000010793) #26	TENT4A (ENSPANG00000004005) #27	ADCY2 (ENSPANG00000014159) #29	CFAP90 (ENSPANG00000003028) #30	FASTKD3 (ENSPANG00000004214) #31	MTRR (ENSPANG00000014385) #32	ENSPANG00000039496	SEMA5A (ENSPANG00000012025) #33	TAS2R1 (ENSPANG00000047467) #34	ATPSCKMT (ENSPANG00000015778) #35	CCT5 (ENSPANG00000006999) #36	CMBL (ENSPANG00000004379) #37
Cercopithecinae_d	ANCESTRAL SPECIES	117		ENSGT00940000161608.n	ENSGT00940000153875.c	ENSGT00530000063884.a	ENSGT00940000158616	ENSGT01030000234613.a.a	ENSGT00940000154486.a.b	ENSGT00940000160982	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a.l #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00910000147919	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988.u.b #36	ENSGT00390000000183 #37
Drill	MODERN SPECIES	1627												NDUFS6 (ENSMLEG00000031436) #14	IRX4 (ENSMLEG00000008142) #15	ENSMLEG00000035820	ADAMTS16 (ENSMLEG00000034561) #21	ICE1 (ENSMLEG00000033241) #22	MED10 (ENSMLEG00000032308) #23	UBE2QL1 (ENSMLEG00000031870) #24	ENSMLEG00000031622	NSUN2 (ENSMLEG00000017173) #25	SRD5A1 (ENSMLEG00000031030) #26	TENT4A (ENSMLEG00000030994) #27	ENSMLEG00000030823
Sooty mangabey	MODERN SPECIES	651		ENSCATG00000034475	TPPP (ENSCATG00000044991)	CEP72 (ENSCATG00000032209)	SLC9A3 (ENSCATG00000039469)	EXOC3 (ENSCATG00000009813)	AHRR (ENSCATG00000044957)	PDCD6 (ENSCATG00000043812)	NDUFS6 (ENSCATG00000032465) #14	IRX4 (ENSCATG00000031325) #15	IRX2 (ENSCATG00000007699) #16	ENSCATG00000003877 #17	IRX1 (ENSCATG00000039676) #19	ENSCATG00000015549 #20	ADAMTS16 (ENSCATG00000010955) #21	ICE1 (ENSCATG00000039347) #22	MED10 (ENSCATG00000041948) #23	UBE2QL1 (ENSCATG00000032120) #24	ENSCATG00000029481	ENSCATG00000045020 #25	SRD5A1 (ENSCATG00000031904) #26	TENT4A (ENSCATG00000034531) #27	ENSCATG00000042677	ADCY2 (ENSCATG00000033939) #29	CFAP90 (ENSCATG00000036277) #30	FASTKD3 (ENSCATG00000028957) #31	MTRR (ENSCATG00000045027) #32	SEMA5A (ENSCATG00000042404) #33	ENSCATG00000029390	ATPSCKMT (ENSCATG00000040712) #35	CCT5 (ENSCATG00000030742) #36
Vervet Monkey	MODERN SPECIES	23	NKD2 (ENSCSAG00000017405)	SLC12A7 (ENSCSAG00000017399)	SLC6A19 (ENSCSAG00000017393)	SLC6A18 (ENSCSAG00000017392)	TERT (ENSCSAG00000017381) #8	CLPTM1L (ENSCSAG00000017368)	SLC6A3 (ENSCSAG00000017367) #9	LPCAT1 (ENSCSAG00000017363) #11	MRPL36 (ENSCSAG00000018986) #13	NDUFS6 (ENSCSAG00000017360) #14	IRX4 (ENSCSAG00000017357) #15	IRX2 (ENSCSAG00000017353) #16	ENSCSAG00000017351 #17	IRX1 (ENSCSAG00000017349) #19	ADAMTS16 (ENSCSAG00000017347) #21	ICE1 (ENSCSAG00000017344) #22	MED10 (ENSCSAG00000017342) #23	UBE2QL1 (ENSCSAG00000017341) #24	NSUN2 (ENSCSAG00000017339) #25	SRD5A1 (ENSCSAG00000017337) #26	TENT4A (ENSCSAG00000017336) #27	ADCY2 (ENSCSAG00000017334) #29	CFAP90 (ENSCSAG00000017332) #30	FASTKD3 (ENSCSAG00000017331) #31	MTRR (ENSCSAG00000017329) #32	SEMA5A (ENSCSAG00000017328) #33	TAS2R1 (ENSCSAG00000018987) #34	ATPSCKMT (ENSCSAG00000017326) #35	CCT5 (ENSCSAG00000017323) #36	CMBL (ENSCSAG00000017321) #37	MARCHF6 (ENSCSAG00000017319)
Rhinopithecus	ANCESTRAL SPECIES	309									ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00910000147015 #20	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00910000147277	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32
Black snub-nosed monkey	MODERN SPECIES	2428																ICE1 (ENSRBIG00000027772) #22	MED10 (ENSRBIG00000042305) #23	UBE2QL1 (ENSRBIG00000031668) #24	ENSRBIG00000036497	NSUN2 (ENSRBIG00000035794) #25	SRD5A1 (ENSRBIG00000035766) #26
Golden snub-nosed monkey	MODERN SPECIES	1911										IRX4 (ENSRROG00000038516) #15	IRX2 (ENSRROG00000029509) #16	ENSRROG00000031597 #17	IRX1 (ENSRROG00000027117) #19	ENSRROG00000030016 #20	ADAMTS16 (ENSRROG00000030301) #21	ICE1 (ENSRROG00000031153) #22	MED10 (ENSRROG00000032049) #23	UBE2QL1 (ENSRROG00000030330) #24	ENSRROG00000032289	NSUN2 (ENSRROG00000035277) #25	ENSRROG00000039857
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183.l #37	ENSGT00940000155171.a.b
Cebidae	ANCESTRAL SPECIES	6	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183.l #37	ENSGT00940000155171.a.b
Cebidae_a	ANCESTRAL SPECIES	82	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183.l #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Capuchin	MODERN SPECIES	185													IRX2 (ENSCCAG00000024198) #16	IRX1 (ENSCCAG00000033188) #19	ADAMTS16 (ENSCCAG00000027839) #21	ICE1 (ENSCCAG00000027588) #22	MED10 (ENSCCAG00000034010) #23	UBE2QL1 (ENSCCAG00000021337) #24	ENSCCAG00000025648 #25	SRD5A1 (ENSCCAG00000026779) #26	TENT4A (ENSCCAG00000006730) #27
Bolivian squirrel monkey	MODERN SPECIES	92	ENSSBOG00000025272	BRD9 (ENSSBOG00000003529)	TRIP13 (ENSSBOG00000026544)	NKD2 (ENSSBOG00000027973)	SLC12A7 (ENSSBOG00000021997)	SLC6A19 (ENSSBOG00000024736)	SLC6A18 (ENSSBOG00000025040)	TERT (ENSSBOG00000030569) #8	CLPTM1L (ENSSBOG00000027261)	SLC6A3 (ENSSBOG00000018794) #9	LPCAT1 (ENSSBOG00000021403) #11	NDUFS6 (ENSSBOG00000029679) #14	IRX4 (ENSSBOG00000035465) #15	IRX1 (ENSSBOG00000031823) #19	ADAMTS16 (ENSSBOG00000031786) #21	ICE1 (ENSSBOG00000018773) #22	MED10 (ENSSBOG00000030219) #23	UBE2QL1 (ENSSBOG00000025393) #24	NSUN2 (ENSSBOG00000035262) #25	SRD5A1 (ENSSBOG00000032790) #26	TENT4A (ENSSBOG00000035549) #27	ADCY2 (ENSSBOG00000025740) #29	CFAP90 (ENSSBOG00000024374) #30	FASTKD3 (ENSSBOG00000020653) #31	MTRR (ENSSBOG00000028252) #32	SEMA5A (ENSSBOG00000032395) #33	ATPSCKMT (ENSSBOG00000021099) #35	CCT5 (ENSSBOG00000022734) #36	CMBL (ENSSBOG00000021093) #37	MARCHF6 (ENSSBOG00000020372)	ROPN1L (ENSSBOG00000021335)
Marmoset	MODERN SPECIES	11	NKD2 (ENSCJAG00000043259)	SLC12A7 (ENSCJAG00000077601)	SLC6A19 (ENSCJAG00000011196)	SLC6A18 (ENSCJAG00000036709)	TERT (ENSCJAG00000048026) #8	ENSCJAG00000047667	SLC6A3 (ENSCJAG00000011089) #9	LPCAT1 (ENSCJAG00000011062) #11	ENSCJAG00000083587 #13	ENSCJAG00000075297 #14	IRX4 (ENSCJAG00000009376) #15	IRX2 (ENSCJAG00000008516) #16	IRX1 (ENSCJAG00000039020) #19	ENSCJAG00000086287	ADAMTS16 (ENSCJAG00000008588) #21	ICE1 (ENSCJAG00000008637) #22	MED10 (ENSCJAG00000008674) #23	UBE2QL1 (ENSCJAG00000008686) #24	NSUN2 (ENSCJAG00000008689) #25	SRD5A1 (ENSCJAG00000008724) #26	TENT4A (ENSCJAG00000008742) #27	ENSCJAG00000087014	ENSCJAG00000084205	ADCY2 (ENSCJAG00000008816) #29	CFAP90 (ENSCJAG00000076097) #30	FASTKD3 (ENSCJAG00000008921) #31	MTRR (ENSCJAG00000008934) #32	SEMA5A (ENSCJAG00000008962) #33	TAS2R1 (ENSCJAG00000077757) #34	ATPSCKMT (ENSCJAG00000070705) #35	ENSCJAG00000008977 #36
Mas night monkey	MODERN SPECIES	837	NKD2 (ENSANAG00000018792)	SLC12A7 (ENSANAG00000033651)	SLC6A19 (ENSANAG00000030219)	SLC6A18 (ENSANAG00000031192)	TERT (ENSANAG00000032128) #8	CLPTM1L (ENSANAG00000027142)	SLC6A3 (ENSANAG00000027816) #9	LPCAT1 (ENSANAG00000027756) #11	NDUFS6 (ENSANAG00000009591) #14	IRX4 (ENSANAG00000023256) #15	IRX2 (ENSANAG00000023050) #16	ENSANAG00000036927	ENSANAG00000019516	IRX1 (ENSANAG00000032866) #19	ADAMTS16 (ENSANAG00000025438) #21	ICE1 (ENSANAG00000023554) #22	ENSANAG00000018766	MED10 (ENSANAG00000030701) #23	UBE2QL1 (ENSANAG00000025279) #24	NSUN2 (ENSANAG00000034451) #25	SRD5A1 (ENSANAG00000020870) #26	TENT4A (ENSANAG00000037806) #27	ADCY2 (ENSANAG00000023768) #29	CFAP90 (ENSANAG00000032842) #30	FASTKD3 (ENSANAG00000021217) #31	MTRR (ENSANAG00000023571) #32	SEMA5A (ENSANAG00000021223) #33	ATPSCKMT (ENSANAG00000022943) #35	CCT5 (ENSANAG00000026097) #36	CMBL (ENSANAG00000029875) #37	MARCHF6 (ENSANAG00000037794)
Tarsier	MODERN SPECIES	3067															ADAMTS16 (ENSTSYG00000004013) #21	ENSTSYG00000035233 #22
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Lemuriformes	ANCESTRAL SPECIES	47	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Lemuriformes_a	ANCESTRAL SPECIES	135	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32
Greater bamboo lemur	MODERN SPECIES	11	ENSPSMG00000010472	NKD2 (ENSPSMG00000010442)	SLC12A7 (ENSPSMG00000010422)	SLC6A19 (ENSPSMG00000010402)	SLC6A18 (ENSPSMG00000010391)	ENSPSMG00000010376 #8	ENSPSMG00000010372	CLPTM1L (ENSPSMG00000010152)	SLC6A3 (ENSPSMG00000009991) #9	LPCAT1 (ENSPSMG00000009909) #11	NDUFS6 (ENSPSMG00000009866) #14	IRX4 (ENSPSMG00000009857) #15	IRX2 (ENSPSMG00000009849) #16	IRX1 (ENSPSMG00000009843) #19	ADAMTS16 (ENSPSMG00000009836) #21	ICE1 (ENSPSMG00000009793) #22	MED10 (ENSPSMG00000009767) #23	UBE2QL1 (ENSPSMG00000009761) #24	NSUN2 (ENSPSMG00000009727) #25	SRD5A1 (ENSPSMG00000009616) #26	TENT4A (ENSPSMG00000009588) #27	ADCY2 (ENSPSMG00000009550) #29	ENSPSMG00000009525 #30	FASTKD3 (ENSPSMG00000009521) #31	MTRR (ENSPSMG00000009513) #32	ENSPSMG00000009491 #33
Coquerels sifaka	MODERN SPECIES	515															ADAMTS16 (ENSPCOG00000015056) #21	ICE1 (ENSPCOG00000015680) #22	MED10 (ENSPCOG00000000065) #23	UBE2QL1 (ENSPCOG00000005715) #24	NSUN2 (ENSPCOG00000012979) #25	SRD5A1 (ENSPCOG00000001310) #26	ENSPCOG00000025593	TENT4A (ENSPCOG00000016295) #27
Mouse lemur	MODERN SPECIES	3	BRD9 (ENSMICG00000004306)	TRIP13 (ENSMICG00000028604)	NKD2 (ENSMICG00000029997)	SLC12A7 (ENSMICG00000028719)	SLC6A19 (ENSMICG00000033849)	SLC6A18 (ENSMICG00000010877)	TERT (ENSMICG00000010883) #8	CLPTM1L (ENSMICG00000000301)	SLC6A3 (ENSMICG00000017612) #9	LPCAT1 (ENSMICG00000032744) #11	NDUFS6 (ENSMICG00000014038) #14	IRX4 (ENSMICG00000029233) #15	IRX2 (ENSMICG00000013531) #16	IRX1 (ENSMICG00000011730) #19	ADAMTS16 (ENSMICG00000010718) #21	ICE1 (ENSMICG00000028221) #22	MED10 (ENSMICG00000013856) #23	UBE2QL1 (ENSMICG00000042851) #24	NSUN2 (ENSMICG00000016549) #25	SRD5A1 (ENSMICG00000016557) #26	TENT4A (ENSMICG00000016562) #27	ADCY2 (ENSMICG00000002952) #29	CFAP90 (ENSMICG00000034745) #30	FASTKD3 (ENSMICG00000002954) #31	MTRR (ENSMICG00000002955) #32	SEMA5A (ENSMICG00000002641) #33	ENSMICG00000010134	ATPSCKMT (ENSMICG00000043453) #35	CCT5 (ENSMICG00000000530) #36	CMBL (ENSMICG00000000533) #37	MARCHF6 (ENSMICG00000010632)
Bushbaby	MODERN SPECIES	303														IRX1 (ENSOGAG00000024732) #19	ADAMTS16 (ENSOGAG00000013842) #21	ICE1 (ENSOGAG00000029817) #22	MED10 (ENSOGAG00000005988) #23	UBE2QL1 (ENSOGAG00000032403) #24	NSUN2 (ENSOGAG00000015015) #25	SRD5A1 (ENSOGAG00000015026) #26	TENT4A (ENSOGAG00000015032) #27
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Glires	ANCESTRAL SPECIES	7	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Rodentia	ANCESTRAL SPECIES	7	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Kangaroo rat	MODERN SPECIES	340	Cep72 (ENSDORG00000014412)	Tppp (ENSDORG00000000450)	Zdhhc11 (ENSDORG00000003485)	Brd9 (ENSDORG00000003483)	Trip13 (ENSDORG00000003482)	Nkd2 (ENSDORG00000012275)	Slc12a7 (ENSDORG00000012278)	Slc6a19 (ENSDORG00000029059)	Slc6a18 (ENSDORG00000011176)	Clptm1l (ENSDORG00000010439)	Slc6a3 (ENSDORG00000001501) #9	Lpcat1 (ENSDORG00000012382) #11	Ndufs6 (ENSDORG00000024296) #14	Irx4 (ENSDORG00000015537) #15	Adamts16 (ENSDORG00000013854) #21	ENSDORG00000025435 #22	ENSDORG00000008413 #23	Ube2ql1 (ENSDORG00000026589) #24	Nsun2 (ENSDORG00000010247) #25	Srd5a1 (ENSDORG00000010248) #26	Tent4a (ENSDORG00000023216) #27	Adcy2 (ENSDORG00000010924) #29	Cfap90 (ENSDORG00000013670) #30	Fastkd3 (ENSDORG00000028341) #31	ENSDORG00000030090 #32	Sema5a (ENSDORG00000009214) #33	Cct5 (ENSDORG00000008787) #36	Cmbl (ENSDORG00000008783) #37	Marchf6 (ENSDORG00000009942)	Ropn1l (ENSDORG00000004133)	Dap (ENSDORG00000023386)
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Lesser Egyptian jerboa	MODERN SPECIES	128	Brd9 (ENSJJAG00000001706)	Zdhhc11 (ENSJJAG00000011440)	Tppp (ENSJJAG00000010294)	Cep72 (ENSJJAG00000008837)	Slc9a3 (ENSJJAG00000020607)	ENSJJAG00000020042	ENSJJAG00000017113	ENSJJAG00000015095	Hsd17b4 (ENSJJAG00000013321)	Ccnb1 (ENSJJAG00000007280)	Slc30a5 (ENSJJAG00000000942)	Pik3r1 (ENSJJAG00000020326)	Cd180 (ENSJJAG00000017107)	ENSJJAG00000011406	Adamts16 (ENSJJAG00000019243) #21	ENSJJAG00000010916 #22	ENSJJAG00000009945 #23	Ube2ql1 (ENSJJAG00000018046) #24	ENSJJAG00000017622	Nsun2 (ENSJJAG00000013996) #25	Srd5a1 (ENSJJAG00000009745) #26	Tent4a (ENSJJAG00000007205) #27
Muroidea	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000153165.a.b.a.a.a.a.a	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	891															Adamts16 (ENSNGAG00000022318) #21	ENSNGAG00000004793 #22	ENSNGAG00000012262	ENSNGAG00000012870	ENSNGAG00000013849 #23	Ube2ql1 (ENSNGAG00000014214) #24	Nsun2 (ENSNGAG00000007424) #25	Srd5a1 (ENSNGAG00000012895) #26	Tent4a (ENSNGAG00000006352) #27	Adcy2 (ENSNGAG00000018235) #29	Cfap90 (ENSNGAG00000001479) #30	Fastkd3 (ENSNGAG00000010644) #31	ENSNGAG00000021798 #32	ENSNGAG00000022210
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000153165.a.a.c.a	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775.d.a #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.d	ENSGT00940000154251.A	ENSGT00940000155274.a.b.c.a.b.c
Chinese hamster chok1gshd	MODERN SPECIES	1	Slc12a7 (ENSCGRG00001015337)	ENSCGRG00001012265	Slc6a19 (ENSCGRG00001011943)	Slc6a18 (ENSCGRG00001012926)	Tert (ENSCGRG00001012546) #8	Clptm1l (ENSCGRG00001016619)	Slc6a3 (ENSCGRG00001006359) #9	Lpcat1 (ENSCGRG00001005110) #11	Mrpl36 (ENSCGRG00001008138) #13	ENSCGRG00001016119 #14	Irx4 (ENSCGRG00001014881) #15	Irx2 (ENSCGRG00001014435) #16	ENSCGRG00001013677	Irx1 (ENSCGRG00001000951) #19	Adamts16 (ENSCGRG00001024673) #21	ENSCGRG00001024420 #22	ENSCGRG00001013263	MED10 (ENSCGRG00001014842) #23	Ube2ql1 (ENSCGRG00001007893) #24	Nsun2 (ENSCGRG00001003947) #25	Srd5a1 (ENSCGRG00001002045) #26	Tent4a (ENSCGRG00001014344) #27	Adcy2 (ENSCGRG00001012614) #29	Cfap90 (ENSCGRG00001012047) #30	Fastkd3 (ENSCGRG00001016248) #31	Mtrr (ENSCGRG00001015919) #32	ENSCGRG00001020262	ENSCGRG00001019143	ENSCGRG00001024688	ENSCGRG00001024555	ENSCGRG00001024303
Golden Hamster	MODERN SPECIES	619	Brd9 (ENSMAUG00000015050)	Trip13 (ENSMAUG00000018209)	Nkd2 (ENSMAUG00000011293)	Slc12a7 (ENSMAUG00000001535)	Slc6a19 (ENSMAUG00000021816)	Slc6a18 (ENSMAUG00000007818)	Tert (ENSMAUG00000008230) #8	Clptm1l (ENSMAUG00000011502)	Lpcat1 (ENSMAUG00000020192) #11	Ndufs6 (ENSMAUG00000011653) #14	Irx4 (ENSMAUG00000002904) #15	Irx2 (ENSMAUG00000014773) #16	ENSMAUG00000009392	Irx1 (ENSMAUG00000001495) #19	Adamts16 (ENSMAUG00000014925) #21	ENSMAUG00000008753 #22	ENSMAUG00000010296 #23	Ube2ql1 (ENSMAUG00000008423) #24	Nsun2 (ENSMAUG00000014207) #25	Srd5a1 (ENSMAUG00000020995) #26	Tent4a (ENSMAUG00000008017) #27	Adcy2 (ENSMAUG00000014023) #29	Cfap90 (ENSMAUG00000013591) #30	Fastkd3 (ENSMAUG00000016393) #31	Mtrr (ENSMAUG00000010077) #32	ENSMAUG00000014263	ENSMAUG00000019345	ENSMAUG00000016407	ENSMAUG00000016174	ENSMAUG00000016437	ENSMAUG00000014660
Cricetidae_B	ANCESTRAL SPECIES	37	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.b	ENSGT00940000158036 #33	ENSGT01100000263477.E #34
Prairie vole	MODERN SPECIES	6	Trip13 (ENSMOCG00000001629)	Nkd2 (ENSMOCG00000020604)	Slc12a7 (ENSMOCG00000005766)	Slc6a19 (ENSMOCG00000022361)	Slc6a18 (ENSMOCG00000014604)	Tert (ENSMOCG00000002105) #8	Clptm1l (ENSMOCG00000006930)	Slc6a3 (ENSMOCG00000000701) #9	Lpcat1 (ENSMOCG00000020107) #11	Mrpl36 (ENSMOCG00000004885) #13	Ndufs6 (ENSMOCG00000020730) #14	Irx4 (ENSMOCG00000003602) #15	Irx2 (ENSMOCG00000002016) #16	Irx1 (ENSMOCG00000001127) #19	Adamts16 (ENSMOCG00000006653) #21	ENSMOCG00000001781 #22	ENSMOCG00000016447	ENSMOCG00000012521 #23	ENSMOCG00000010244 #24	Nsun2 (ENSMOCG00000009613) #25	Srd5a1 (ENSMOCG00000013895) #26	Tent4a (ENSMOCG00000008477) #27	Adcy2 (ENSMOCG00000010329) #29	Cfap90 (ENSMOCG00000004801) #30	Fastkd3 (ENSMOCG00000018808) #31	Mtrr (ENSMOCG00000015617) #32	ENSMOCG00000021801	ENSMOCG00000019063	ENSMOCG00000016464	ENSMOCG00000000172	ENSMOCG00000020149
Northern American deer mouse	MODERN SPECIES	6	Trip13 (ENSPEMG00000006165)	Nkd2 (ENSPEMG00000009852)	Slc12a7 (ENSPEMG00000009080)	Slc6a19 (ENSPEMG00000016690)	Slc6a18 (ENSPEMG00000008103)	Tert (ENSPEMG00000013643) #8	Clptm1l (ENSPEMG00000007565)	Slc6a3 (ENSPEMG00000017495) #9	Lpcat1 (ENSPEMG00000015897) #11	Mrpl36 (ENSPEMG00000006495) #13	Ndufs6 (ENSPEMG00000012127) #14	Irx4 (ENSPEMG00000007372) #15	Irx2 (ENSPEMG00000000903) #16	Irx1 (ENSPEMG00000016721) #19	Adamts16 (ENSPEMG00000001407) #21	Ice1 (ENSPEMG00000029176) #22	ENSPEMG00000021408 #23	Ube2ql1 (ENSPEMG00000025343) #24	Nsun2 (ENSPEMG00000021790) #25	Srd5a1 (ENSPEMG00000021787) #26	Tent4a (ENSPEMG00000024121) #27	Adcy2 (ENSPEMG00000022387) #29	Cfap90 (ENSPEMG00000026544) #30	Fastkd3 (ENSPEMG00000021202) #31	Mtrr (ENSPEMG00000006807) #32	ENSPEMG00000011535	ENSPEMG00000022570	ENSPEMG00000025284	ENSPEMG00000020980	ENSPEMG00000027706	ENSPEMG00000020934
Murinae	ANCESTRAL SPECIES	39	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000153165.a.b.a.a.a.b.a.a.b	ENSGT00940000153165.a.b.a.a.a.b.a.a.a.b	ENSGT00940000155274.a.b.c.a.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000154251.A.h.a
Mus	ANCESTRAL SPECIES	22	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.a
Mus_A	ANCESTRAL SPECIES	14	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896.b	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b
Mus_B	ANCESTRAL SPECIES	13	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896.b	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866.m #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000153165.a.b.a.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b
Mouse	MODERN SPECIES	4	Trip13 (ENSMUSG00000021569)	Nkd2 (ENSMUSG00000021567)	Slc12a7 (ENSMUSG00000017756)	Slc6a19 (ENSMUSG00000021565)	Slc6a18 (ENSMUSG00000021612)	Tert (ENSMUSG00000021611) #8	Clptm1l (ENSMUSG00000021610)	Slc6a3 (ENSMUSG00000021609) #9	Lpcat1 (ENSMUSG00000021608) #11	Mrpl36 (ENSMUSG00000021607) #13	Ndufs6 (ENSMUSG00000021606) #14	Irx4 (ENSMUSG00000021604) #15	Irx2 (ENSMUSG00000001504) #16	Irx1 (ENSMUSG00000060969) #19	Adamts16 (ENSMUSG00000049538) #21	Ice1 (ENSMUSG00000034525) #22	Med10 (ENSMUSG00000021598)	Ube2ql1 (ENSMUSG00000052981) #24	Srd5a1 (ENSMUSG00000021594) #26	Nsun2 (ENSMUSG00000021595) #25	Tent4a (ENSMUSG00000034575) #27	Adcy2 (ENSMUSG00000021536) #29	Cfap90 (ENSMUSG00000021534) #30	Fastkd3 (ENSMUSG00000021532) #31	Mtrr (ENSMUSG00000034617) #32	BC048507 (ENSMUSG00000064063)	Gm10037 (ENSMUSG00000058246)	Zfp273 (ENSMUSG00000030446)	Zfp493 (ENSMUSG00000090659)	Zfp85 (ENSMUSG00000058331)	Zfp65 (ENSMUSG00000071281)
Mus_C	ANCESTRAL SPECIES	10	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896.b	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866.m #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00860000135976	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00390000000378.d.b.p	ENSGT00940000153165.a.b.a.a.a.a.a.a.a	ENSGT00940000153165.a.b.a.a.a.a.a.b	ENSGT00940000169481	ENSGT00940000154251.A.h.a.b	ENSGT00940000155274.a.b.c.a.b.a.b.a.b
Steppe mouse	MODERN SPECIES	3330	Slc12a7 (ENSMSIG00000016137)	ENSMSIG00000016283	Slc6a19 (ENSMSIG00000016300)	Slc6a18 (ENSMSIG00000016330)	Tert (ENSMSIG00000016999) #8	Clptm1l (ENSMSIG00000017023)	Slc6a3 (ENSMSIG00000017069) #9	Lpcat1 (ENSMSIG00000017129) #11	Mrpl36 (ENSMSIG00000017166) #13	Ndufs6 (ENSMSIG00000017174) #14	Irx4 (ENSMSIG00000017201) #15	Irx2 (ENSMSIG00000017231) #16	Irx1 (ENSMSIG00000017250) #19	ENSMSIG00000017283	Adamts16 (ENSMSIG00000017303) #21	Ice1 (ENSMSIG00000017478) #22	ENSMSIG00000017532	ENSMSIG00000017563 #23	ENSMSIG00000017620 #24	Nsun2 (ENSMSIG00000017636) #25	Srd5a1 (ENSMSIG00000017747) #26	ENSMSIG00000017762 #27	ENSMSIG00000017798
spretus	MODERN SPECIES	4	Nkd2 (MGP_SPRETEiJ_G0019593)	Slc12a7 (MGP_SPRETEiJ_G0019592)	Slc6a19 (MGP_SPRETEiJ_G0019591)	Slc6a18 (MGP_SPRETEiJ_G0019590)	Tert (MGP_SPRETEiJ_G0019589) #8	Clptm1l (MGP_SPRETEiJ_G0019588)	Slc6a3 (MGP_SPRETEiJ_G0019587) #9	Lpcat1 (MGP_SPRETEiJ_G0019586) #11	Mrpl36 (MGP_SPRETEiJ_G0019585) #13	Ndufs6 (MGP_SPRETEiJ_G0019584) #14	Irx4 (MGP_SPRETEiJ_G0019583) #15	Irx2 (MGP_SPRETEiJ_G0019582) #16	Irx1 (MGP_SPRETEiJ_G0019581) #19	MGP_SPRETEiJ_G0019580	Adamts16 (MGP_SPRETEiJ_G0019579) #21	Ice1 (MGP_SPRETEiJ_G0019578) #22	MGP_SPRETEiJ_G0019577 #23	MGP_SPRETEiJ_G0019576 #24	Srd5a1 (MGP_SPRETEiJ_G0019575) #26	Nsun2 (MGP_SPRETEiJ_G0019574) #25	Tent4a (MGP_SPRETEiJ_G0019573) #27	Adcy2 (MGP_SPRETEiJ_G0019572) #29	Cfap90 (MGP_SPRETEiJ_G0019571) #30	Fastkd3 (MGP_SPRETEiJ_G0019570) #31	Mtrr (MGP_SPRETEiJ_G0019569) #32	BC048507 (MGP_SPRETEiJ_G0019568)	MGP_SPRETEiJ_G0019567	Zfp493 (MGP_SPRETEiJ_G0019566)	MGP_SPRETEiJ_G0019565	Zfp65 (MGP_SPRETEiJ_G0019564)	MGP_SPRETEiJ_G0019563
Ryukyu mouse	MODERN SPECIES	4	Nkd2 (MGP_CAROLIEiJ_G0018709)	Slc12a7 (MGP_CAROLIEiJ_G0018708)	Slc6a19 (MGP_CAROLIEiJ_G0018707)	Slc6a18 (MGP_CAROLIEiJ_G0018706)	Tert (MGP_CAROLIEiJ_G0018705) #8	Clptm1l (MGP_CAROLIEiJ_G0018704)	Slc6a3 (MGP_CAROLIEiJ_G0018703) #9	Lpcat1 (MGP_CAROLIEiJ_G0018702) #11	Mrpl36 (MGP_CAROLIEiJ_G0018701) #13	Ndufs6 (MGP_CAROLIEiJ_G0018700) #14	Irx4 (MGP_CAROLIEiJ_G0018699) #15	Irx2 (MGP_CAROLIEiJ_G0018698) #16	Irx1 (MGP_CAROLIEiJ_G0018697) #19	MGP_CAROLIEiJ_G0018696	Adamts16 (MGP_CAROLIEiJ_G0018695) #21	Ice1 (MGP_CAROLIEiJ_G0018694) #22	MGP_CAROLIEiJ_G0018693 #23	Ube2ql1 (MGP_CAROLIEiJ_G0018692) #24	Srd5a1 (MGP_CAROLIEiJ_G0018691) #26	Nsun2 (MGP_CAROLIEiJ_G0018690) #25	Tent4a (MGP_CAROLIEiJ_G0018689) #27	Adcy2 (MGP_CAROLIEiJ_G0018688) #29	Cfap90 (MGP_CAROLIEiJ_G0018687) #30	Fastkd3 (MGP_CAROLIEiJ_G0018686) #31	Mtrr (MGP_CAROLIEiJ_G0018685) #32	BC048507 (MGP_CAROLIEiJ_G0018684)	Zfp493 (MGP_CAROLIEiJ_G0018683)	Zfp85 (MGP_CAROLIEiJ_G0018682)	MGP_CAROLIEiJ_G0018681	MGP_CAROLIEiJ_G0018680	Zfp729a (MGP_CAROLIEiJ_G0018679)
Shrew mouse	MODERN SPECIES	2	Nkd2 (MGP_PahariEiJ_G0015790)	Slc12a7 (MGP_PahariEiJ_G0015789)	Slc6a19 (MGP_PahariEiJ_G0015788)	Slc6a18 (MGP_PahariEiJ_G0015787)	Tert (MGP_PahariEiJ_G0015786) #8	Clptm1l (MGP_PahariEiJ_G0015785)	Slc6a3 (MGP_PahariEiJ_G0015784) #9	Lpcat1 (MGP_PahariEiJ_G0015783) #11	Mrpl36 (MGP_PahariEiJ_G0015782) #13	Ndufs6 (MGP_PahariEiJ_G0015781) #14	Irx4 (MGP_PahariEiJ_G0015780) #15	Irx2 (MGP_PahariEiJ_G0015779) #16	Irx1 (MGP_PahariEiJ_G0015778) #19	MGP_PahariEiJ_G0015777	Adamts16 (MGP_PahariEiJ_G0015776) #21	Ice1 (MGP_PahariEiJ_G0015775) #22	MGP_PahariEiJ_G0015774 #23	Ube2ql1 (MGP_PahariEiJ_G0015773) #24	Srd5a1 (MGP_PahariEiJ_G0015772) #26	Nsun2 (MGP_PahariEiJ_G0015771) #25	Tent4a (MGP_PahariEiJ_G0015770) #27	Adcy2 (MGP_PahariEiJ_G0015769) #29	Cfap90 (MGP_PahariEiJ_G0015768) #30	Fastkd3 (MGP_PahariEiJ_G0015767) #31	Mtrr (MGP_PahariEiJ_G0015766) #32	BC048507 (MGP_PahariEiJ_G0015765)	MGP_PahariEiJ_G0015764	MGP_PahariEiJ_G0015763	Zfp493 (MGP_PahariEiJ_G0015762)	MGP_PahariEiJ_G0015761	Zfp729a (MGP_PahariEiJ_G0015760)
Rat	MODERN SPECIES		Trip13 (ENSRNOG00000015810)	Nkd2 (ENSRNOG00000016103)	Slc12a7 (ENSRNOG00000016372)	Slc6a19 (ENSRNOG00000026501)	Slc6a18 (ENSRNOG00000016253)	Tert (ENSRNOG00000025327) #8	Clptm1l (ENSRNOG00000016923)	Slc6a3 (ENSRNOG00000017302) #9	Lpcat1 (ENSRNOG00000017930) #11	Mrpl36 (ENSRNOG00000023407) #13	Ndufs6l1 (ENSRNOG00000062531) #14	Irx4 (ENSRNOG00000012720) #15	Irx2 (ENSRNOG00000012742) #16	Irx1 (ENSRNOG00000033609) #19	Adamts16 (ENSRNOG00000016812) #21	Ice1 (ENSRNOG00000023053) #22	Dlat-ps1 (ENSRNOG00000017095)	Med10 (ENSRNOG00000017150) #23	Ube2ql1 (ENSRNOG00000034075) #24	Nsun2 (ENSRNOG00000017254) #25	Srd5a1 (ENSRNOG00000017601) #26	Tent4a (ENSRNOG00000017613) #27	Ap2b1-ps1 (ENSRNOG00000017678)	Adcy2 (ENSRNOG00000032150) #29	Cfap90 (ENSRNOG00000047406) #30	Fastkd3 (ENSRNOG00000027422) #31	Mtrr (ENSRNOG00000017826) #32	Zfp455l1 (ENSRNOG00000042308)	ENSRNOG00000068953	RGD1566325 (ENSRNOG00000017963)	LOC102547287 (ENSRNOG00000016462)
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000039877	PIK3R1 (ENSHGLG00000003228)	ENSHGLG00000009915	ENSHGLG00000002541	ENSHGLG00000002279	ENSHGLG00000036757	ENSHGLG00000047986	ENSHGLG00000004377	ENSHGLG00000000292	ENSHGLG00000000046	ENSHGLG00000035273	ENSHGLG00000048969	ENSHGLG00000003987 #16	IRX1 (ENSHGLG00000005060) #19	ADAMTS16 (ENSHGLG00000007184) #21	ICE1 (ENSHGLG00000004659) #22	ENSHGLG00000043670	ENSHGLG00000040324 #23	UBE2QL1 (ENSHGLG00000042708) #24	NSUN2 (ENSHGLG00000013825) #25	ENSHGLG00000018170 #26	TENT4A (ENSHGLG00000033481) #27	ENSHGLG00000016066	ENSHGLG00000040620	ADCY2 (ENSHGLG00000007112) #29	CFAP90 (ENSHGLG00000045658) #30	FASTKD3 (ENSHGLG00000004249) #31	MTRR (ENSHGLG00000005425) #32	SEMA5A (ENSHGLG00000017629) #33	ENSHGLG00000045152 #34	ENSHGLG00000049198 #34
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Guinea pig	MODERN SPECIES	144															ADAMTS16 (ENSCPOG00000009819) #21	ENSCPOG00000039980 #22	MED10 (ENSCPOG00000031737) #23	UBE2QL1 (ENSCPOG00000038178) #24	NSUN2 (ENSCPOG00000008196) #25	SRD5A1 (ENSCPOG00000032112) #26	TENT4A (ENSCPOG00000009006) #27
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Long-tailed chinchilla	MODERN SPECIES	211	BRD9 (ENSCLAG00000005681)	TRIP13 (ENSCLAG00000003450)	NKD2 (ENSCLAG00000003738)	SLC12A7 (ENSCLAG00000004556)	SLC6A19 (ENSCLAG00000005488)	SLC6A18 (ENSCLAG00000004695)	TERT (ENSCLAG00000006143) #8	CLPTM1L (ENSCLAG00000006371)	SLC6A3 (ENSCLAG00000006703) #9	LPCAT1 (ENSCLAG00000007581) #11	NDUFS6 (ENSCLAG00000007890) #14	IRX4 (ENSCLAG00000013236) #15	IRX2 (ENSCLAG00000010848) #16	IRX1 (ENSCLAG00000011133) #19	ADAMTS16 (ENSCLAG00000011357) #21	ICE1 (ENSCLAG00000006995) #22	MED10 (ENSCLAG00000003135) #23	NSUN2 (ENSCLAG00000003188) #25	SRD5A1 (ENSCLAG00000003581) #26	TENT4A (ENSCLAG00000003733) #27	ADCY2 (ENSCLAG00000004022) #29	CFAP90 (ENSCLAG00000005513) #30	FASTKD3 (ENSCLAG00000005534) #31	MTRR (ENSCLAG00000003599) #32	SEMA5A (ENSCLAG00000003796) #33
Degu	MODERN SPECIES	49	TRIP13 (ENSODEG00000018401)	NKD2 (ENSODEG00000018297)	SLC12A7 (ENSODEG00000018252)	SLC6A19 (ENSODEG00000018254)	SLC6A18 (ENSODEG00000018351)	TERT (ENSODEG00000018274) #8	CLPTM1L (ENSODEG00000018435)	SLC6A3 (ENSODEG00000018337) #9	LPCAT1 (ENSODEG00000018339) #11	ENSODEG00000018308 #13	NDUFS6 (ENSODEG00000018267) #14	IRX4 (ENSODEG00000018434) #15	IRX2 (ENSODEG00000018250) #16	IRX1 (ENSODEG00000018349) #19	ADAMTS16 (ENSODEG00000018405) #21	ENSODEG00000018278 #22	ENSODEG00000018433	MED10 (ENSODEG00000018285) #23	UBE2QL1 (ENSODEG00000018284) #24	ENSODEG00000018291	NSUN2 (ENSODEG00000018305) #25	SRD5A1 (ENSODEG00000018442) #26	TENT4A (ENSODEG00000018357) #27	ENSODEG00000018283	ADCY2 (ENSODEG00000018279) #29	FASTKD3 (ENSODEG00000018378) #31	ENSODEG00000018330 #32	SEMA5A (ENSODEG00000018380) #33	ENSODEG00000018296	ATPSCKMT (ENSODEG00000018372) #35	ENSODEG00000018260 #36
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Marmotini	ANCESTRAL SPECIES	75	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Marmotini_b	ANCESTRAL SPECIES	157													ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Arctic ground squirrel	MODERN SPECIES	255												IRX2 (ENSUPAG00010016403) #16	IRX1 (ENSUPAG00010016392) #19	ENSUPAG00010016375	ADAMTS16 (ENSUPAG00010016298) #21	ICE1 (ENSUPAG00010016270) #22
Squirrel	MODERN SPECIES	234													IRX2 (ENSSTOG00000003533) #16	IRX1 (ENSSTOG00000020840) #19	ADAMTS16 (ENSSTOG00000004197) #21	ICE1 (ENSSTOG00000028724) #22	NSUN2 (ENSSTOG00000004090) #25	TENT4A (ENSSTOG00000004554) #27
Alpin marmot	MODERN SPECIES	27	TRIP13 (ENSMMMG00000016193)	NKD2 (ENSMMMG00000016197)	SLC12A7 (ENSMMMG00000016228)	SLC6A19 (ENSMMMG00000016250)	SLC6A18 (ENSMMMG00000016257)	TERT (ENSMMMG00000016292) #8	CLPTM1L (ENSMMMG00000016350)	SLC6A3 (ENSMMMG00000016359) #9	LPCAT1 (ENSMMMG00000016379) #11	ENSMMMG00000016387 #13	NDUFS6 (ENSMMMG00000016391) #14	IRX4 (ENSMMMG00000016398) #15	IRX2 (ENSMMMG00000016418) #16	IRX1 (ENSMMMG00000016428) #19	ADAMTS16 (ENSMMMG00000016445) #21	ICE1 (ENSMMMG00000016467) #22	MED10 (ENSMMMG00000016704) #23	UBE2QL1 (ENSMMMG00000016713) #24	NSUN2 (ENSMMMG00000016722) #25	ENSMMMG00000016735 #26	TENT4A (ENSMMMG00000016743) #27	ADCY2 (ENSMMMG00000016776) #29	CFAP90 (ENSMMMG00000016801) #30	FASTKD3 (ENSMMMG00000016807) #31	MTRR (ENSMMMG00000016810) #32	ENSMMMG00000016828	SEMA5A (ENSMMMG00000016842) #33	TAS2R1 (ENSMMMG00000016854) #34	ATPSCKMT (ENSMMMG00000016857) #35	CCT5 (ENSMMMG00000016876) #36	CMBL (ENSMMMG00000016882) #37
Eurasian red squirrel	MODERN SPECIES	15	SLC12A7 (ENSSVLG00005007858)	SLC6A19 (ENSSVLG00005007759)	SLC6A18 (ENSSVLG00005007675)	TERT (ENSSVLG00005007516) #8	CLPTM1L (ENSSVLG00005007406)	SLC6A3 (ENSSVLG00005007330) #9	ENSSVLG00005007261 #11	ENSSVLG00005007224 #13	NDUFS6 (ENSSVLG00005007209) #14	IRX4 (ENSSVLG00005007188) #15	IRX2 (ENSSVLG00005007175) #16	ENSSVLG00005007165	IRX1 (ENSSVLG00005007138) #19	ENSSVLG00005007115	ADAMTS16 (ENSSVLG00005006885) #21	ICE1 (ENSSVLG00005006497) #22	MED10 (ENSSVLG00005006416) #23	UBE2QL1 (ENSSVLG00005006397) #24	NSUN2 (ENSSVLG00005006203) #25	SRD5A1 (ENSSVLG00005006147) #26	TENT4A (ENSSVLG00005006070) #27	ADCY2 (ENSSVLG00005006016) #29	CFAP90 (ENSSVLG00005005976) #30	FASTKD3 (ENSSVLG00005005935) #31	MTRR (ENSSVLG00005005871) #32	SEMA5A (ENSSVLG00005005842) #33	TAS2R1 (ENSSVLG00005005821) #34	ENSSVLG00005005790	ATPSCKMT (ENSSVLG00005005707) #35	ENSSVLG00005005577 #36	CMBL (ENSSVLG00005005537) #37
Lagomorpha	ANCESTRAL SPECIES	514															ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Rabbit	MODERN SPECIES	601															ADAMTS16 (ENSOCUG00000009507) #21	ICE1 (ENSOCUG00000022005) #22
Pika	MODERN SPECIES	1946															ADAMTS16 (ENSOPRG00000013210) #21	ENSOPRG00000013244 #22
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Common shrew	MODERN SPECIES	4466																ENSSARG00000004026 #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.a
Carnivora	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Felidae	ANCESTRAL SPECIES	6	ENSGT00940000157657	ENSGT00940000154896.f	ENSGT00940000154896.e	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Panthera	ANCESTRAL SPECIES	6	ENSGT00940000157657	ENSGT00940000154896.f	ENSGT00940000154896.e	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Tiger	MODERN SPECIES	523															ADAMTS16 (ENSPTIG00000013544) #21	ICE1 (ENSPTIG00000013477) #22	MED10 (ENSPTIG00000013384) #23	NSUN2 (ENSPTIG00000013257) #25	SRD5A1 (ENSPTIG00000013232) #26	TENT4A (ENSPTIG00000013200) #27
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00940000157657	ENSGT00940000154896.f	ENSGT00940000154896.e	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
leopard	MODERN SPECIES	19				ENSPPRG00000011435	SLC6A18 (ENSPPRG00000011628)	TERT (ENSPPRG00000006427) #8	CLPTM1L (ENSPPRG00000016169)	SLC6A3 (ENSPPRG00000018924) #9	LPCAT1 (ENSPPRG00000021187) #11	NDUFS6 (ENSPPRG00000022405) #14	IRX4 (ENSPPRG00000024448) #15	IRX2 (ENSPPRG00000024401) #16	ENSPPRG00000024272	IRX1 (ENSPPRG00000024209) #19	ADAMTS16 (ENSPPRG00000023920) #21	ENSPPRG00000022666 #22	MED10 (ENSPPRG00000000589) #23	UBE2QL1 (ENSPPRG00000000629) #24	NSUN2 (ENSPPRG00000001946) #25	SRD5A1 (ENSPPRG00000002054) #26	TENT4A (ENSPPRG00000002409) #27	ADCY2 (ENSPPRG00000003380) #29	CFAP90 (ENSPPRG00000003784) #30	FASTKD3 (ENSPPRG00000004141) #31	MTRR (ENSPPRG00000004545) #32	SEMA5A (ENSPPRG00000005014) #33	TAS2R1 (ENSPPRG00000014981) #34	ATPSCKMT (ENSPPRG00000005698) #35	CCT5 (ENSPPRG00000006386) #36	CMBL (ENSPPRG00000006791) #37	MARCHF6 (ENSPPRG00000012698)
lion	MODERN SPECIES		NKD2 (ENSPLOG00000003335)	SLC12A7 (ENSPLOG00000003362)	SLC6A19 (ENSPLOG00000003408)	SLC6A18 (ENSPLOG00000003576)	TERT (ENSPLOG00000003847) #8	CLPTM1L (ENSPLOG00000003877)	SLC6A3 (ENSPLOG00000003913) #9	LPCAT1 (ENSPLOG00000003938) #11	ENSPLOG00000003949 #13	NDUFS6 (ENSPLOG00000003955) #14	IRX4 (ENSPLOG00000003963) #15	IRX2 (ENSPLOG00000003976) #16	ENSPLOG00000003986	IRX1 (ENSPLOG00000003994) #19	ADAMTS16 (ENSPLOG00000004010) #21	ICE1 (ENSPLOG00000004038) #22	MED10 (ENSPLOG00000004055) #23	UBE2QL1 (ENSPLOG00000004071) #24	NSUN2 (ENSPLOG00000004085) #25	SRD5A1 (ENSPLOG00000004092) #26	TENT4A (ENSPLOG00000004144) #27	ADCY2 (ENSPLOG00000004170) #29	CFAP90 (ENSPLOG00000004188) #30	FASTKD3 (ENSPLOG00000004196) #31	MTRR (ENSPLOG00000010289) #32	SEMA5A (ENSPLOG00000010322) #33	TAS2R1 (ENSPLOG00000010440) #34	ENSPLOG00000010455	ATPSCKMT (ENSPLOG00000010468) #35	CCT5 (ENSPLOG00000010569) #36	CMBL (ENSPLOG00000010689) #37
Cat	MODERN SPECIES		SLC12A7 (ENSFCAG00000009540)	SLC6A19 (ENSFCAG00000009541)	SLC6A18 (ENSFCAG00000009542)	TERT (ENSFCAG00000009543) #8	CLPTM1L (ENSFCAG00000009544)	SLC6A3 (ENSFCAG00000002581) #9	LPCAT1 (ENSFCAG00000000783) #11	ENSFCAG00000026326 #13	NDUFS6 (ENSFCAG00000033856) #14	IRX4 (ENSFCAG00000022359) #15	IRX2 (ENSFCAG00000040664) #16	ENSFCAG00000044678	IRX1 (ENSFCAG00000036923) #19	ENSFCAG00000025379	ADAMTS16 (ENSFCAG00000003777) #21	ICE1 (ENSFCAG00000027435) #22	ENSFCAG00000037684	UBE2QL1 (ENSFCAG00000038630) #24	NSUN2 (ENSFCAG00000015602) #25	SRD5A1 (ENSFCAG00000015601) #26	TENT4A (ENSFCAG00000003474) #27	ADCY2 (ENSFCAG00000015101) #29	CFAP90 (ENSFCAG00000019341) #30	FASTKD3 (ENSFCAG00000015104) #31	MTRR (ENSFCAG00000015105) #32	SEMA5A (ENSFCAG00000012608) #33	TAS2R1 (ENSFCAG00000012611) #34	ENSFCAG00000048844	ATPSCKMT (ENSFCAG00000027158) #35	CCT5 (ENSFCAG00000003129) #36	CMBL (ENSFCAG00000028005) #37
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Canidae	ANCESTRAL SPECIES	62	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00390000013811.b.d	ENSGT00950000183199.b #22	ENSGT00950000186221	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Canis_lupus	ANCESTRAL SPECIES	49	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00390000013811.b.d	ENSGT00950000183199.b #22	ENSGT00950000186221	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00940000153052.c.b.a.a.a.a.b.j.b	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Dog	MODERN SPECIES	27	NKD2 (ENSCAFG00845027016)	SLC12A7 (ENSCAFG00845026600)	SLC6A19 (ENSCAFG00845026397)	SLC6A18 (ENSCAFG00845026287)	TERT (ENSCAFG00845025817) #8	CLPTM1L (ENSCAFG00845025532)	SLC6A3 (ENSCAFG00845025384) #9	LPCAT1 (ENSCAFG00845025093) #11	MRPL36 (ENSCAFG00845025034) #13	ENSCAFG00845024996 #14	IRX4 (ENSCAFG00845024941) #15	IRX2 (ENSCAFG00845024864) #16	IRX1 (ENSCAFG00845024655) #19	ADAMTS16 (ENSCAFG00845024365) #21	ENSCAFG00845024318	ICE1 (ENSCAFG00845024182) #22	ENSCAFG00845024145	MED10 (ENSCAFG00845024101) #23	UBE2QL1 (ENSCAFG00845024067) #24	NSUN2 (ENSCAFG00845023886) #25	SRD5A1 (ENSCAFG00845023819) #26	TENT4A (ENSCAFG00845023557) #27	ADCY2 (ENSCAFG00845023075) #29	CFAP90 (ENSCAFG00845022890) #30	FASTKD3 (ENSCAFG00845022802) #31	MTRR (ENSCAFG00845022722) #32	SEMA5A (ENSCAFG00845022219) #33	TAS2R1 (ENSCAFG00845022145) #34	ENSCAFG00845022120	ATPSCKMT (ENSCAFG00845021964) #35	CCT5 (ENSCAFG00845021786) #36
Dingo	MODERN SPECIES	159	NKD2 (ENSCAFG00020023031)	SLC12A7 (ENSCAFG00020023026)	SLC6A19 (ENSCAFG00020023014)	SLC6A18 (ENSCAFG00020022926)	TERT (ENSCAFG00020022919) #8	CLPTM1L (ENSCAFG00020022917)	SLC6A3 (ENSCAFG00020022906) #9	LPCAT1 (ENSCAFG00020022903) #11	MRPL36 (ENSCAFG00020022901) #13	NDUFS6 (ENSCAFG00020022900) #14	IRX4 (ENSCAFG00020022896) #15	IRX2 (ENSCAFG00020022893) #16	IRX1 (ENSCAFG00020022891) #19	ADAMTS16 (ENSCAFG00020022881) #21	ENSCAFG00020022878	ENSCAFG00020022877 #22	ENSCAFG00020022874	MED10 (ENSCAFG00020022869) #23	UBE2QL1 (ENSCAFG00020022868) #24	NSUN2 (ENSCAFG00020022862) #25	SRD5A1 (ENSCAFG00020022843) #26	TENT4A (ENSCAFG00020022835) #27	ENSCAFG00020022831	ADCY2 (ENSCAFG00020022544) #29	CFAP90 (ENSCAFG00020022543) #30	FASTKD3 (ENSCAFG00020022541) #31	MTRR (ENSCAFG00020022525) #32	SEMA5A (ENSCAFG00020022499) #33	TAS2R1 (ENSCAFG00020022493) #34	ENSCAFG00020022491	ATPSCKMT (ENSCAFG00020022486) #35
Red fox	MODERN SPECIES	138																ICE1 (ENSVVUG00000017667) #22	ENSVVUG00000017674	MED10 (ENSVVUG00000017687) #23	UBE2QL1 (ENSVVUG00000017689) #24	NSUN2 (ENSVVUG00000017691) #25	SRD5A1 (ENSVVUG00000017694) #26	TENT4A (ENSVVUG00000017702) #27	ADCY2 (ENSVVUG00000017710) #29	CFAP90 (ENSVVUG00000017732) #30	FASTKD3 (ENSVVUG00000017734) #31	MTRR (ENSVVUG00000017737) #32	ENSVVUG00000017745	SEMA5A (ENSVVUG00000017753) #33	TAS2R1 (ENSVVUG00000017784) #34	ENSVVUG00000017786	ATPSCKMT (ENSVVUG00000017833) #35
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Mustelinae	ANCESTRAL SPECIES	127	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32
American mink	MODERN SPECIES	131	TRIP13 (ENSNVIG00000022459)	ENSNVIG00000022473	SLC12A7 (ENSNVIG00000022621)	SLC6A19 (ENSNVIG00000024286)	SLC6A18 (ENSNVIG00000024290)	TERT (ENSNVIG00000024328) #8	CLPTM1L (ENSNVIG00000024366)	SLC6A3 (ENSNVIG00000024373) #9	LPCAT1 (ENSNVIG00000024375) #11	NDUFS6 (ENSNVIG00000024379) #14	IRX4 (ENSNVIG00000024384) #15	IRX2 (ENSNVIG00000000014) #16	ENSNVIG00000000020	IRX1 (ENSNVIG00000000063) #19	ADAMTS16 (ENSNVIG00000000104) #21	ICE1 (ENSNVIG00000000134) #22	MED10 (ENSNVIG00000000179) #23
Ferret	MODERN SPECIES	296	TERT (ENSMPUG00000008917) #8	CLPTM1L (ENSMPUG00000008908)	ENSMPUG00000008903	SLC6A3 (ENSMPUG00000007672) #9	LPCAT1 (ENSMPUG00000007662) #11	ENSMPUG00000019810	IRX4 (ENSMPUG00000007656) #15	IRX2 (ENSMPUG00000007647) #16	ENSMPUG00000007644	IRX1 (ENSMPUG00000007638) #19	ENSMPUG00000007631	ENSMPUG00000007624	ENSMPUG00000007621	ENSMPUG00000007616	ADAMTS16 (ENSMPUG00000007606) #21	ICE1 (ENSMPUG00000007595) #22	ENSMPUG00000007591	ENSMPUG00000007586	ENSMPUG00000007583	MED10 (ENSMPUG00000007576) #23	ENSMPUG00000019809	NSUN2 (ENSMPUG00000007561) #25	SRD5A1 (ENSMPUG00000007540) #26	TENT4A (ENSMPUG00000007530) #27	ENSMPUG00000019807	ADCY2 (ENSMPUG00000007159) #29	FASTKD3 (ENSMPUG00000007141) #31	ENSMPUG00000007134
Ursidae	ANCESTRAL SPECIES	24	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Giant Panda	MODERN SPECIES	13	ENSAMEG00000008326	ENSAMEG00000029733	BRD9 (ENSAMEG00000008289)	ENSAMEG00000008267	ENSAMEG00000010356	SLC6A18 (ENSAMEG00000010403)	TERT (ENSAMEG00000010578) #8	CLPTM1L (ENSAMEG00000010640)	SLC6A3 (ENSAMEG00000010690) #9	LPCAT1 (ENSAMEG00000010885) #11	NDUFS6 (ENSAMEG00000010930) #14	IRX4 (ENSAMEG00000010933) #15	IRX2 (ENSAMEG00000030165) #16	IRX1 (ENSAMEG00000001629) #19	ENSAMEG00000005402 #21	ICE1 (ENSAMEG00000005383) #22	NSUN2 (ENSAMEG00000002744) #25	SRD5A1 (ENSAMEG00000002796) #26	TENT4A (ENSAMEG00000002806) #27	ENSAMEG00000013734	ADCY2 (ENSAMEG00000028284) #29	FASTKD3 (ENSAMEG00000000793) #31	MTRR (ENSAMEG00000000762) #32	SEMA5A (ENSAMEG00000003884) #33	TAS2R1 (ENSAMEG00000003883) #34	ENSAMEG00000003878	ATPSCKMT (ENSAMEG00000003866) #35	CCT5 (ENSAMEG00000003838) #36	CMBL (ENSAMEG00000003820) #37	MARCHF6 (ENSAMEG00000003768)	ROPN1L (ENSAMEG00000003758)
Ursus	ANCESTRAL SPECIES	114	ENSGT00940000153875.c	ENSGT00940000161608	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Polar bear	MODERN SPECIES	324	CEP72 (ENSUMAG00000022135)	TPPP (ENSUMAG00000022129)	ENSUMAG00000022124	BRD9 (ENSUMAG00000022112)	TRIP13 (ENSUMAG00000022041)	ENSUMAG00000022013	SLC12A7 (ENSUMAG00000021868)	SLC6A19 (ENSUMAG00000021799)	SLC6A18 (ENSUMAG00000021793)	CLPTM1L (ENSUMAG00000021602)	SLC6A3 (ENSUMAG00000021572) #9	LPCAT1 (ENSUMAG00000021535) #11	ENSUMAG00000021510 #13	ENSUMAG00000021508 #14	ADAMTS16 (ENSUMAG00000021427) #21	ICE1 (ENSUMAG00000021400) #22	ENSUMAG00000021395	NSUN2 (ENSUMAG00000021149) #25	SRD5A1 (ENSUMAG00000021097) #26	TENT4A (ENSUMAG00000021088) #27	ADCY2 (ENSUMAG00000020819) #29
American black bear	DUPLICATION
American black bear	MODERN SPECIES	2798																ENSUAMG00000008419 #22
American black bear	MODERN SPECIES	1283															ADAMTS16 (ENSUAMG00000023549) #21	ENSUAMG00000023553 #22
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Equus	ANCESTRAL SPECIES	23	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT01090000260115	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000155163.a.a	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Donkey	MODERN SPECIES	1	TRIP13 (ENSEASG00005018251)	NKD2 (ENSEASG00005018295)	SLC12A7 (ENSEASG00005018301)	SLC6A19 (ENSEASG00005018308)	SLC6A18 (ENSEASG00005018374)	TERT (ENSEASG00005018543) #8	CLPTM1L (ENSEASG00005018545)	SLC6A3 (ENSEASG00005018547) #9	LPCAT1 (ENSEASG00005032107) #11	ENSEASG00005036706 #13	NDUFS6 (ENSEASG00005023604) #14	IRX4 (ENSEASG00005018554) #15	IRX2 (ENSEASG00005018557) #16	IRX1 (ENSEASG00005018560) #19	ADAMTS16 (ENSEASG00005018564) #21	ICE1 (ENSEASG00005018571) #22	ENSEASG00005018574	MED10 (ENSEASG00005018576) #23	UBE2QL1 (ENSEASG00005032765) #24	NSUN2 (ENSEASG00005018580) #25	ENSEASG00005018582	SRD5A1 (ENSEASG00005018581) #26	TENT4A (ENSEASG00005018583) #27	ADCY2 (ENSEASG00005018584) #29	CFAP90 (ENSEASG00005024888) #30	FASTKD3 (ENSEASG00005018587) #31	MTRR (ENSEASG00005018589) #32	ENSEASG00005026990	SEMA5A (ENSEASG00005018591) #33	TAS2R1 (ENSEASG00005018593) #34	ATPSCKMT (ENSEASG00005018594) #35
Horse	MODERN SPECIES	13	SLC12A7 (ENSECAG00000009911)	SLC6A19 (ENSECAG00000015357)	SLC6A18 (ENSECAG00000014930)	TERT (ENSECAG00000001347) #8	CLPTM1L (ENSECAG00000013231)	ENSECAG00000058649	SLC6A3 (ENSECAG00000024615) #9	LPCAT1 (ENSECAG00000021716) #11	MRPL36 (ENSECAG00000001222) #13	NDUFS6 (ENSECAG00000021690) #14	IRX4 (ENSECAG00000017403) #15	IRX2 (ENSECAG00000015758) #16	IRX1 (ENSECAG00000015273) #19	ENSECAG00000001110	ADAMTS16 (ENSECAG00000000787) #21	ICE1 (ENSECAG00000023968) #22	MED10 (ENSECAG00000023738)	ENSECAG00000035561 #24	NSUN2 (ENSECAG00000016357) #25	ENSECAG00000045164	SRD5A1 (ENSECAG00000012520) #26	TENT4A (ENSECAG00000010134) #27	ADCY2 (ENSECAG00000016266) #29	CFAP90 (ENSECAG00000015640) #30	FASTKD3 (ENSECAG00000014894) #31	MTRR (ENSECAG00000023073) #32	ENSECAG00000048611	ENSECAG00000045308	SEMA5A (ENSECAG00000016241) #33	TAS2R1 (ENSECAG00000005160) #34	ATPSCKMT (ENSECAG00000013194) #35
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00390000002325 #17	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Megabat	MODERN SPECIES	1891																ENSPVAG00000004215 #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Microbat	MODERN SPECIES	937	TRIP13 (ENSMLUG00000004237)	NKD2 (ENSMLUG00000004247)	SLC12A7 (ENSMLUG00000004253)	SLC6A19 (ENSMLUG00000012517)	SLC6A18 (ENSMLUG00000012527)	TERT (ENSMLUG00000012533) #8	CLPTM1L (ENSMLUG00000012546)	SLC6A3 (ENSMLUG00000015691) #9	LPCAT1 (ENSMLUG00000015702) #11	NDUFS6 (ENSMLUG00000016888) #14	ENSMLUG00000007563 #15	IRX2 (ENSMLUG00000002364) #16	ENSMLUG00000030572	ENSMLUG00000028897	ADAMTS16 (ENSMLUG00000016787) #21	ICE1 (ENSMLUG00000016799) #22	ENSMLUG00000007960 #23	UBE2QL1 (ENSMLUG00000029107) #24	NSUN2 (ENSMLUG00000009609) #25	SRD5A1 (ENSMLUG00000009652) #26	TENT4A (ENSMLUG00000004424) #27	ENSMLUG00000029028	ADCY2 (ENSMLUG00000013498) #29	CFAP90 (ENSMLUG00000017359) #30	FASTKD3 (ENSMLUG00000013518) #31	MTRR (ENSMLUG00000010391) #32	GOLPH3 (ENSMLUG00000007410)	PDZD2 (ENSMLUG00000007331)	C5orf22 (ENSMLUG00000002598)	DROSHA (ENSMLUG00000002581)	CDH6 (ENSMLUG00000002574)
Greater horseshoe bat	MODERN SPECIES	25	SLC6A19 (ENSRFEG00010001577)	SLC6A18 (ENSRFEG00010001792)	TERT (ENSRFEG00010002119) #8	CLPTM1L (ENSRFEG00010002171)	SLC6A3 (ENSRFEG00010002207) #9	LPCAT1 (ENSRFEG00010002236) #11	MRPL36 (ENSRFEG00010002262) #13	NDUFS6 (ENSRFEG00010002276) #14	IRX4 (ENSRFEG00010002288) #15	IRX2 (ENSRFEG00010002308) #16	ENSRFEG00010002333	ENSRFEG00010002345	ENSRFEG00010002361	IRX1 (ENSRFEG00010002369) #19	ADAMTS16 (ENSRFEG00010002424) #21	ICE1 (ENSRFEG00010002508) #22	MED10 (ENSRFEG00010002529) #23	UBE2QL1 (ENSRFEG00010002542) #24	NSUN2 (ENSRFEG00010002690) #25	SRD5A1 (ENSRFEG00010002875) #26	TENT4A (ENSRFEG00010002900) #27	ADCY2 (ENSRFEG00010002967) #29	CFAP90 (ENSRFEG00010003003) #30	FASTKD3 (ENSRFEG00010003029) #31	MTRR (ENSRFEG00010003071) #32	SEMA5A (ENSRFEG00010003116) #33	TAS2R1 (ENSRFEG00010003156) #34	ATPSCKMT (ENSRFEG00010003174) #35	CCT5 (ENSRFEG00010003237) #36	CMBL (ENSRFEG00010003311) #37	MARCHF6 (ENSRFEG00010003360)
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Suina	ANCESTRAL SPECIES	25	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00960000191710	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Chacoan peccary	MODERN SPECIES	7												IRX4 (ENSCWAG00000000416) #15	IRX2 (ENSCWAG00000000397) #16	IRX1 (ENSCWAG00000000355) #19	ADAMTS16 (ENSCWAG00000000282) #21	ICE1 (ENSCWAG00000000224) #22	MED10 (ENSCWAG00000005876) #23	UBE2QL1 (ENSCWAG00000005858) #24	NSUN2 (ENSCWAG00000005818) #25	SRD5A1 (ENSCWAG00000005799) #26	TENT4A (ENSCWAG00000005723) #27	ADCY2 (ENSCWAG00000005614) #29	CFAP90 (ENSCWAG00000005585) #30	FASTKD3 (ENSCWAG00000005559) #31	MTRR (ENSCWAG00000005530) #32	SEMA5A (ENSCWAG00000005493) #33	TAS2R1 (ENSCWAG00000005462) #34	ATPSCKMT (ENSCWAG00000005400) #35	CCT5 (ENSCWAG00000005226) #36	CMBL (ENSCWAG00000005191) #37	MARCHF6 (ENSCWAG00000005026)
Pig	MODERN SPECIES	7	TRIP13 (ENSSSCG00000034522)	NKD2 (ENSSSCG00000055161)	SLC12A7 (ENSSSCG00000034302)	SLC6A19 (ENSSSCG00000017120)	SLC6A18 (ENSSSCG00000017117)	TERT (ENSSSCG00000017118) #8	CLPTM1L (ENSSSCG00000017119)	SLC6A3 (ENSSSCG00000017121) #9	LPCAT1 (ENSSSCG00000017116) #11	MRPL36 (ENSSSCG00000040154) #13	NDUFS6 (ENSSSCG00000017114) #14	IRX4 (ENSSSCG00000017112) #15	IRX2 (ENSSSCG00000032074) #16	IRX1 (ENSSSCG00000034884) #19	ADAMTS16 (ENSSSCG00000017109) #21	ICE1 (ENSSSCG00000031547) #22	MED10 (ENSSSCG00000017106) #23	UBE2QL1 (ENSSSCG00000035825) #24	NSUN2 (ENSSSCG00000017104) #25	SRD5A1 (ENSSSCG00000017103) #26	TENT4A (ENSSSCG00000017102) #27	ADCY2 (ENSSSCG00000017101) #29	CFAP90 (ENSSSCG00000017098) #30	FASTKD3 (ENSSSCG00000017099) #31	MTRR (ENSSSCG00000017100) #32	ENSSSCG00000048414	SEMA5A (ENSSSCG00000017095) #33	TAS2R1 (ENSSSCG00000053250) #34	ATPSCKMT (ENSSSCG00000036387) #35	CCT5 (ENSSSCG00000024126) #36	CMBL (ENSSSCG00000039763) #37
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Arabian camel	MODERN SPECIES	22	TRIP13 (ENSCDRG00005013214)	NKD2 (ENSCDRG00005013068)	SLC12A7 (ENSCDRG00005007851)	SLC6A19 (ENSCDRG00005007586)	SLC6A18 (ENSCDRG00005007426)	TERT (ENSCDRG00005007091) #8	CLPTM1L (ENSCDRG00005006937)	SLC6A3 (ENSCDRG00005006584) #9	LPCAT1 (ENSCDRG00005006427) #11	MRPL36 (ENSCDRG00005006409) #13	NDUFS6 (ENSCDRG00005006367) #14	IRX4 (ENSCDRG00005005132) #15	IRX2 (ENSCDRG00005005106) #16	ENSCDRG00005005061	ENSCDRG00005004962 #21	ICE1 (ENSCDRG00005004943) #22	MED10 (ENSCDRG00005004916) #23	NSUN2 (ENSCDRG00005004622) #25	SRD5A1 (ENSCDRG00005004588) #26	TENT4A (ENSCDRG00005004536) #27	ADCY2 (ENSCDRG00005004299) #29	CFAP90 (ENSCDRG00005004257) #30	FASTKD3 (ENSCDRG00005004222) #31	MTRR (ENSCDRG00005004184) #32	ENSCDRG00005004152	SEMA5A (ENSCDRG00005003914) #33	TAS2R1 (ENSCDRG00005003868) #34	ATPSCKMT (ENSCDRG00005003839) #35	CCT5 (ENSCDRG00005003627) #36	CMBL (ENSCDRG00005003573) #37	MARCHF6 (ENSCDRG00005003229)
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00950000183198.c.b.a.t.a
Sperm whale	MODERN SPECIES	19	NKD2 (ENSPCTG00005001284)	SLC12A7 (ENSPCTG00005001313)	SLC6A19 (ENSPCTG00005001357)	TERT (ENSPCTG00005001408) #8	CLPTM1L (ENSPCTG00005001495)	SLC6A3 (ENSPCTG00005001531) #9	LPCAT1 (ENSPCTG00005001554) #11	MRPL36 (ENSPCTG00005001573) #13	NDUFS6 (ENSPCTG00005001580) #14	IRX4 (ENSPCTG00005001592) #15	IRX2 (ENSPCTG00005001610) #16	ENSPCTG00005001625	ENSPCTG00005001636 #16	IRX1 (ENSPCTG00005001645) #19	ADAMTS16 (ENSPCTG00005001733) #21	ICE1 (ENSPCTG00005002002) #22	ENSPCTG00005002020	MED10 (ENSPCTG00005002031) #23	ENSPCTG00005002052 #25	SRD5A1 (ENSPCTG00005002064) #26	TENT4A (ENSPCTG00005002085) #27	ADCY2 (ENSPCTG00005002147) #29	CFAP90 (ENSPCTG00005002289) #30	FASTKD3 (ENSPCTG00005002301) #31	MTRR (ENSPCTG00005002314) #32	SEMA5A (ENSPCTG00005002330) #33	ATPSCKMT (ENSPCTG00005002344) #35	CCT5 (ENSPCTG00005002365) #36	CMBL (ENSPCTG00005002401) #37	MARCH6 (ENSPCTG00005002477)	ENSPCTG00005002747
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00990000208225	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501.f #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Narwhal	MODERN SPECIES	298	NKD2 (ENSMMNG00015005039)	SLC12A7 (ENSMMNG00015005066)	SLC6A19 (ENSMMNG00015005102)	SLC6A18 (ENSMMNG00015005126)	TERT (ENSMMNG00015005153) #8	CLPTM1L (ENSMMNG00015005167)	SLC6A3 (ENSMMNG00015005189) #9	LPCAT1 (ENSMMNG00015005202) #11	MRPL36 (ENSMMNG00015005219) #13	NDUFS6 (ENSMMNG00015005230) #14	IRX4 (ENSMMNG00015005245) #15	IRX2 (ENSMMNG00015005260) #16	ENSMMNG00015005274	IRX1 (ENSMMNG00015005292) #19	ADAMTS16 (ENSMMNG00015005325) #21	ICE1 (ENSMMNG00015005372) #22	ENSMMNG00015005394 #23	UBE2QL1 (ENSMMNG00015005409) #24	NSUN2 (ENSMMNG00015005419) #25	SRD5A1 (ENSMMNG00015005441) #26	TENT4A (ENSMMNG00015005453) #27	ADCY2 (ENSMMNG00015005481) #29	CFAP90 (ENSMMNG00015005524) #30	FASTKD3 (ENSMMNG00015005536) #31	MTRR (ENSMMNG00015005557) #32	ENSMMNG00015005590	ENSMMNG00015005605	SEMA5A (ENSMMNG00015005625) #33	ATPSCKMT (ENSMMNG00015005677) #35	CCT5 (ENSMMNG00015005728) #36	CMBL (ENSMMNG00015005779) #37
Beluga whale	MODERN SPECIES	16	TRIP13 (ENSDLEG00000003445)	NKD2 (ENSDLEG00000003494)	SLC12A7 (ENSDLEG00000003522)	SLC6A19 (ENSDLEG00000003586)	SLC6A18 (ENSDLEG00000003661)	TERT (ENSDLEG00000003731) #8	CLPTM1L (ENSDLEG00000003766)	SLC6A3 (ENSDLEG00000003787) #9	LPCAT1 (ENSDLEG00000003802) #11	ENSDLEG00000003825 #13	NDUFS6 (ENSDLEG00000003836) #14	IRX4 (ENSDLEG00000003849) #15	IRX2 (ENSDLEG00000003871) #16	IRX1 (ENSDLEG00000003895) #19	ADAMTS16 (ENSDLEG00000000178) #21	ICE1 (ENSDLEG00000000235) #22	MED10 (ENSDLEG00000000283) #23	UBE2QL1 (ENSDLEG00000000392) #24	NSUN2 (ENSDLEG00000000437) #25	SRD5A1 (ENSDLEG00000000513) #26	PAPD7 (ENSDLEG00000000536) #27	ADCY2 (ENSDLEG00000000578) #29	CUNH5orf49 (ENSDLEG00000000660) #30	FASTKD3 (ENSDLEG00000000670) #31	MTRR (ENSDLEG00000000694) #32	SEMA5A (ENSDLEG00000000752) #33	ATPSCKMT (ENSDLEG00000000926) #35	CCT5 (ENSDLEG00000000940) #36	CMBL (ENSDLEG00000000961) #37	MARCH6 (ENSDLEG00000000992)	ROPN1L (ENSDLEG00000001073)
Vaquita	MODERN SPECIES	14	SLC12A7 (ENSPSNG00000002551)	SLC6A19 (ENSPSNG00000002478)	SLC6A18 (ENSPSNG00000002444)	TERT (ENSPSNG00000002372) #8	CLPTM1L (ENSPSNG00000002275)	SLC6A3 (ENSPSNG00000002215) #9	LPCAT1 (ENSPSNG00000002146) #11	ENSPSNG00000002113 #13	NDUFS6 (ENSPSNG00000002096) #14	IRX4 (ENSPSNG00000002071) #15	IRX2 (ENSPSNG00000002053) #16	ENSPSNG00000002036	IRX1 (ENSPSNG00000002005) #19	ENSPSNG00000001985	ADAMTS16 (ENSPSNG00000001929) #21	ICE1 (ENSPSNG00000001876) #22	ENSPSNG00000001827 #23	UBE2QL1 (ENSPSNG00000001807) #24	NSUN2 (ENSPSNG00000001768) #25	SRD5A1 (ENSPSNG00000001754) #26	TENT4A (ENSPSNG00000001714) #27	ADCY2 (ENSPSNG00000001660) #29	CFAP90 (ENSPSNG00000001622) #30	FASTKD3 (ENSPSNG00000001602) #31	MTRR (ENSPSNG00000001565) #32	ENSPSNG00000001545	SEMA5A (ENSPSNG00000001504) #33	ATPSCKMT (ENSPSNG00000001462) #35	CCT5 (ENSPSNG00000001419) #36	CMBL (ENSPSNG00000001379) #37	MARCHF6 (ENSPSNG00000001274)
Dolphin	MODERN SPECIES	4748																ENSTTRG00000017079 #22
Blue whale	MODERN SPECIES	14	SLC12A7 (ENSBMSG00010012799)	SLC6A19 (ENSBMSG00010013817)	ENSBMSG00010013849	TERT (ENSBMSG00010013889) #8	CLPTM1L (ENSBMSG00010014019)	SLC6A3 (ENSBMSG00010014310) #9	LPCAT1 (ENSBMSG00010014400) #11	MRPL36 (ENSBMSG00010014493) #13	NDUFS6 (ENSBMSG00010014513) #14	ENSBMSG00010014531 #15	ENSBMSG00010014549 #15	IRX2 (ENSBMSG00010014578) #16	ENSBMSG00010014609	IRX1 (ENSBMSG00010014662) #19	ADAMTS16 (ENSBMSG00010014738) #21	ICE1 (ENSBMSG00010014997) #22	MED10 (ENSBMSG00010015064) #23	ENSBMSG00010015095 #24	NSUN2 (ENSBMSG00010015114) #25	SRD5A1 (ENSBMSG00010015152) #26	TENT4A (ENSBMSG00010015190) #27	ADCY2 (ENSBMSG00010015273) #29	CFAP90 (ENSBMSG00010015403) #30	FASTKD3 (ENSBMSG00010015428) #31	MTRR (ENSBMSG00010015453) #32	SEMA5A (ENSBMSG00010015493) #33	ENSBMSG00010015568	ATPSCKMT (ENSBMSG00010015593) #35	CCT5 (ENSBMSG00010015626) #36	CMBL (ENSBMSG00010015715) #37	MARCHF6 (ENSBMSG00010015821)
Pecora	ANCESTRAL SPECIES	25	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Yarkand deer	MODERN SPECIES	17	TRIP13 (ENSCHYG00000021703)	NKD2 (ENSCHYG00000021646)	SLC12A7 (ENSCHYG00000021056)	SLC6A19 (ENSCHYG00000020930)	SLC6A18 (ENSCHYG00000020702)	TERT (ENSCHYG00000020414) #8	ENSCHYG00000020359	CLPTM1L (ENSCHYG00000020066)	ENSCHYG00000019585 #9	LPCAT1 (ENSCHYG00000019379) #11	ENSCHYG00000019353 #13	ENSCHYG00000019290 #14	IRX4 (ENSCHYG00000019198) #15	IRX1 (ENSCHYG00000019067) #19	ADAMTS16 (ENSCHYG00000018678) #21	ICE1 (ENSCHYG00000018552) #22	ENSCHYG00000018521	ENSCHYG00000018501	MED10 (ENSCHYG00000018459) #23	UBE2QL1 (ENSCHYG00000018406) #24	NSUN2 (ENSCHYG00000018182) #25	SRD5A1 (ENSCHYG00000018150) #26	TENT4A (ENSCHYG00000018057) #27	ADCY2 (ENSCHYG00000017238) #29	ENSCHYG00000017205	CFAP90 (ENSCHYG00000017169) #30	FASTKD3 (ENSCHYG00000017127) #31	MTRR (ENSCHYG00000016969) #32	SEMA5A (ENSCHYG00000016807) #33	TAS2R1 (ENSCHYG00000016763) #34	ENSCHYG00000016710
Percora_a	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Siberian musk deer	MODERN SPECIES	1233															ADAMTS16 (ENSMMSG00000019291) #21	ICE1 (ENSMMSG00000020525) #22	MED10 (ENSMMSG00000020585) #23	UBE2QL1 (ENSMMSG00000020605) #24	NSUN2 (ENSMMSG00000020641) #25	ENSMMSG00000020746 #26	TENT4A (ENSMMSG00000020780) #27	ADCY2 (ENSMMSG00000020881) #29	ENSMMSG00000021030	CFAP90 (ENSMMSG00000021039) #30	FASTKD3 (ENSMMSG00000021063) #31	MTRR (ENSMMSG00000021088) #32	SEMA5A (ENSMMSG00000021177) #33	ENSMMSG00000021301	ENSMMSG00000021350 #34	ATPSCKMT (ENSMMSG00000021397) #35	CCT5 (ENSMMSG00000021573) #36
Bovidae	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Caprinae	ANCESTRAL SPECIES	24	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Goat	MODERN SPECIES	12	TPPP (ENSCHIG00000012981)	SLC6A19 (ENSCHIG00000009247)	SLC6A18 (ENSCHIG00000017593)	TERT (ENSCHIG00000008229) #8	BRD9 (ENSCHIG00000015801)	TRIP13 (ENSCHIG00000022332)	NKD2 (ENSCHIG00000022698)	SLC12A7 (ENSCHIG00000018789)	SLC6A3 (ENSCHIG00000021410) #9	LPCAT1 (ENSCHIG00000008758) #11	NDUFS6 (ENSCHIG00000020281) #14	IRX4 (ENSCHIG00000023690) #15	IRX2 (ENSCHIG00000011251) #16	IRX1 (ENSCHIG00000017851) #19	ADAMTS16 (ENSCHIG00000010517) #21	ICE1 (ENSCHIG00000024007) #22	MED10 (ENSCHIG00000020899) #23	UBE2QL1 (ENSCHIG00000002861) #24	NSUN2 (ENSCHIG00000019385) #25	SRD5A1 (ENSCHIG00000012029) #26	TENT4A (ENSCHIG00000017328) #27	ENSCHIG00000025402	ADCY2 (ENSCHIG00000023502) #29	CFAP90 (ENSCHIG00000025918) #30	FASTKD3 (ENSCHIG00000018823) #31	MTRR (ENSCHIG00000019340) #32	ENSCHIG00000001904	SEMA5A (ENSCHIG00000013180) #33	ENSCHIG00000019011	ATPSCKMT (ENSCHIG00000018299) #35	CCT5 (ENSCHIG00000018198) #36
Rambouillet Sheep	MODERN SPECIES	7	BRD9 (ENSOARG00020013591)	TRIP13 (ENSOARG00020013528)	SLC12A7 (ENSOARG00020012793)	SLC6A19 (ENSOARG00020012724)	SLC6A18 (ENSOARG00020011151)	TERT (ENSOARG00020010728) #8	CLPTM1L (ENSOARG00020010550)	SLC6A3 (ENSOARG00020010397) #9	LPCAT1 (ENSOARG00020010211) #11	ENSOARG00020010180 #13	NDUFS6 (ENSOARG00020010127) #14	IRX4 (ENSOARG00020010022) #15	IRX2 (ENSOARG00020023975) #16	IRX1 (ENSOARG00020023933) #19	ADAMTS16 (ENSOARG00020023792) #21	ICE1 (ENSOARG00020023470) #22	MED10 (ENSOARG00020023421) #23	UBE2QL1 (ENSOARG00020023404) #24	NSUN2 (ENSOARG00020023145) #25	SRD5A1 (ENSOARG00020023075) #26	TENT4A (ENSOARG00020022831) #27	ENSOARG00020022762	ADCY2 (ENSOARG00020022595) #29	CFAP90 (ENSOARG00020022548) #30	FASTKD3 (ENSOARG00020022521) #31	MTRR (ENSOARG00020022449) #32	ENSOARG00020022435	SEMA5A (ENSOARG00020022080) #33	ENSOARG00020022027 #34	ATPSCKMT (ENSOARG00020021986) #35	CCT5 (ENSOARG00020021843) #36
Bovinae	ANCESTRAL SPECIES	25	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #29	ENSGT00910000148650	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35
Bos	ANCESTRAL SPECIES	26	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Bos_a	ANCESTRAL SPECIES	38	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Wild yak	MODERN SPECIES	2679																ENSBMUG00000022596 #22
Domestic yak	MODERN SPECIES	15	SLC12A7 (ENSBGRG00000007178)	ENSBGRG00000007512	SLC6A19 (ENSBGRG00000007536)	SLC6A18 (ENSBGRG00000007711)	TERT (ENSBGRG00000007850) #8	CLPTM1L (ENSBGRG00000008008)	SLC6A3 (ENSBGRG00000008417) #9	LPCAT1 (ENSBGRG00000008483) #11	ENSBGRG00000008559 #13	ENSBGRG00000008576 #14	IRX4 (ENSBGRG00000008624) #15	IRX2 (ENSBGRG00000008666) #16	IRX1 (ENSBGRG00000008805) #19	ADAMTS16 (ENSBGRG00000008878) #21	ENSBGRG00000009083	ENSBGRG00000009109 #22	ENSBGRG00000009147 #23	ENSBGRG00000009193 #24	ENSBGRG00000009262	NSUN2 (ENSBGRG00000009320) #25	SRD5A1 (ENSBGRG00000009686) #26	TENT4A (ENSBGRG00000009794) #27	ADCY2 (ENSBGRG00000009979) #29	CFAP90 (ENSBGRG00000011468) #30	FASTKD3 (ENSBGRG00000011515) #31	MTRR (ENSBGRG00000011588) #32	SEMA5A (ENSBGRG00000011867) #33	ENSBGRG00000012367	ATPSCKMT (ENSBGRG00000012505) #35	CCT5 (ENSBGRG00000012720) #36	CMBL (ENSBGRG00000013187) #37
Bos_b	ANCESTRAL SPECIES	29	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657.e	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00950000186039	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT01050000244868.a.a.a.b.a.b.a.a.a.a.b.d	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263481.n.a.a.a.a.a.a.b.b.a.a.b.b	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35
Hybrid Bos Indicus	MODERN SPECIES	12	SLC12A7 (ENSBIXG00005026843)	SLC6A19 (ENSBIXG00005026916)	SLC6A18 (ENSBIXG00005026953)	TERT (ENSBIXG00005004650) #8	CLPTM1L (ENSBIXG00005006940)	SLC6A3 (ENSBIXG00005004683) #9	LPCAT1 (ENSBIXG00005027232) #11	ENSBIXG00005027272 #13	NDUFS6 (ENSBIXG00005004700) #14	IRX4 (ENSBIXG00005027355) #15	ENSBIXG00005027401	IRX2 (ENSBIXG00005027442) #16	IRX1 (ENSBIXG00005027510) #19	ENSBIXG00005027561	ADAMTS16 (ENSBIXG00005027878) #21	ICE1 (ENSBIXG00005006625) #22	MED10 (ENSBIXG00005006964) #23	ENSBIXG00005004816	UBE2QL1 (ENSBIXG00005028040) #24	NSUN2 (ENSBIXG00005028093) #25	SRD5A1 (ENSBIXG00005028127) #26	TENT4A (ENSBIXG00005028210) #27	ADCY2 (ENSBIXG00005028463) #29	CFAP90 (ENSBIXG00005006543) #30	FASTKD3 (ENSBIXG00005028543) #31	MTRR (ENSBIXG00005006640) #32	ENSBIXG00005002382	ENSBIXG00005028663	TAS2R1 (ENSBIXG00005028671) #34	ATPSCKMT (ENSBIXG00005028756) #35	CCT5 (ENSBIXG00005005013) #36
Cow	MODERN SPECIES	12	SLC12A7 (ENSBTAG00000006775)	ENSBTAG00000049547	SLC6A19 (ENSBTAG00000045695)	SLC6A18 (ENSBTAG00000012559)	TERT (ENSBTAG00000012567) #8	CLPTM1L (ENSBTAG00000001329)	SLC6A3 (ENSBTAG00000015843) #9	LPCAT1 (ENSBTAG00000000944) #11	ENSBTAG00000050317 #13	NDUFS6 (ENSBTAG00000009914) #14	IRX4 (ENSBTAG00000015907) #15	ENSBTAG00000054006	IRX2 (ENSBTAG00000047499) #16	IRX1 (ENSBTAG00000000809) #19	ADAMTS16 (ENSBTAG00000018460) #21	ICE1 (ENSBTAG00000018501) #22	ENSBTAG00000049304	MED10 (ENSBTAG00000008130) #23	UBE2QL1 (ENSBTAG00000048851) #24	NSUN2 (ENSBTAG00000015466) #25	SRD5A1 (ENSBTAG00000015478) #26	TENT4A (ENSBTAG00000003381) #27	ENSBTAG00000032442	ADCY2 (ENSBTAG00000019210) #29	CFAP90 (ENSBTAG00000055034) #30	FASTKD3 (ENSBTAG00000009400) #31	MTRR (ENSBTAG00000009401) #32	ENSBTAG00000051674	SEMA5A (ENSBTAG00000005021) #33	ENSBTAG00000052324	TAS2R1 (ENSBTAG00000032508) #34
American bison	MODERN SPECIES	3291	SLC9A3 (ENSBBBG00000017032)	CEP72 (ENSBBBG00000004199)	TPPP (ENSBBBG00000016941)	ENSBBBG00000004187	BRD9 (ENSBBBG00000016929)	TRIP13 (ENSBBBG00000016892)	SLC12A7 (ENSBBBG00000008296)	SLC6A19 (ENSBBBG00000016767)	SLC6A18 (ENSBBBG00000000711)	CLPTM1L (ENSBBBG00000016737)	SLC6A3 (ENSBBBG00000016720) #9	LPCAT1 (ENSBBBG00000016651) #11	ENSBBBG00000004122 #13	NDUFS6 (ENSBBBG00000016621) #14	ADAMTS16 (ENSBBBG00000004110) #21	ENSBBBG00000000735 #22	ENSBBBG00000000745	MED10 (ENSBBBG00000000761) #23	NSUN2 (ENSBBBG00000016571) #25	TENT4A (ENSBBBG00000016484) #27	ADCY2 (ENSBBBG00000016455) #29	ENSBBBG00000016418	CFAP90 (ENSBBBG00000016415) #30	FASTKD3 (ENSBBBG00000016411) #31	MTRR (ENSBBBG00000016406) #32
Atlantogenata	ANCESTRAL SPECIES					ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Xenarthra	ANCESTRAL SPECIES	1746															ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Armadillo	MODERN SPECIES	276														ENSDNOG00000036615	ADAMTS16 (ENSDNOG00000001714) #21	ICE1 (ENSDNOG00000048762) #22
Sloth	MODERN SPECIES	5120																ENSCHOG00000004455 #22
Afrotheria	ANCESTRAL SPECIES	139				ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Tenrec	MODERN SPECIES	5597																ENSETEG00000010960 #22
Afrotheria_a	ANCESTRAL SPECIES	140				ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a
Elephant	MODERN SPECIES	526	DAP (ENSLAFG00000011209)	ANKRD33B (ENSLAFG00000011206)	ENSLAFG00000029202	SLC6A19 (ENSLAFG00000005422)	SLC6A18 (ENSLAFG00000006023)	TERT (ENSLAFG00000013077) #8	CLPTM1L (ENSLAFG00000012245)	SLC6A3 (ENSLAFG00000003040) #9	ENSLAFG00000011431 #11	ENSLAFG00000005707 #13	ENSLAFG00000005708 #14	IRX4 (ENSLAFG00000000460) #15	IRX2 (ENSLAFG00000031893) #16	IRX1 (ENSLAFG00000012017) #19	ADAMTS16 (ENSLAFG00000011253) #21	ICE1 (ENSLAFG00000001334) #22	MED10 (ENSLAFG00000016146) #23	UBE2QL1 (ENSLAFG00000027273) #24	NSUN2 (ENSLAFG00000009411) #25	ENSLAFG00000012945 #26	TENT4A (ENSLAFG00000004787) #27	ADCY2 (ENSLAFG00000004954) #29	FASTKD3 (ENSLAFG00000016130) #31	MTRR (ENSLAFG00000018552) #32	SEMA5A (ENSLAFG00000003820) #33	ATPSCKMT (ENSLAFG00000022748) #35	CCT5 (ENSLAFG00000006113) #36	ENSLAFG00000028191 #37	MARCHF6 (ENSLAFG00000007224)	ROPN1L (ENSLAFG00000011860)
Hyrax	MODERN SPECIES	4725																ENSPCAG00000002369 #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775.k #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000155584.db	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775.k #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000155584.db	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775.k #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00390000017432	ENSGT00440000033589.d	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775.k #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01100000263477.E #34	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183 #37	ENSGT00940000155171.a.b
Common wonbat	MODERN SPECIES	1028	SLC12A7 (ENSVURG00010021732)	SLC6A19 (ENSVURG00010021711)	SLC6A18 (ENSVURG00010021703)	ENSVURG00010021696 #8	CLPTM1L (ENSVURG00010021677)	SLC6A3 (ENSVURG00010021583) #9	LPCAT1 (ENSVURG00010021564) #11	ENSVURG00010021553	MRPL36 (ENSVURG00010021548) #13	ENSVURG00010021544 #14	IRX4 (ENSVURG00010021536) #15	IRX2 (ENSVURG00010021523) #16	IRX1 (ENSVURG00010021515) #19	ENSVURG00010021507	ENSVURG00010021496 #21	ENSVURG00010021480 #22	MED10 (ENSVURG00010021467) #23	UBE2QL1 (ENSVURG00010021464) #24	NSUN2 (ENSVURG00010021458) #25	SRD5A1 (ENSVURG00010021454) #26	TENT4A (ENSVURG00010021451) #27	ENSVURG00010021441	ADCY2 (ENSVURG00010021414) #29	CFAP90 (ENSVURG00010021395) #30	FASTKD3 (ENSVURG00010021388) #31	MTRR (ENSVURG00010021377) #32	ENSVURG00010021370	SEMA5A (ENSVURG00010021360) #33	ENSVURG00010021351 #34	ENSVURG00010021349 #34	ATPSCKMT (ENSVURG00010021339) #35
koala	MODERN SPECIES	103															ADAMTS16 (ENSPCIG00000012782) #21	ENSPCIG00000012781 #22	ENSPCIG00000017587	ENSPCIG00000011859 #24	NSUN2 (ENSPCIG00000011853) #25	SRD5A1 (ENSPCIG00000011847) #26	TENT4A (ENSPCIG00000017056) #27	ADCY2 (ENSPCIG00000014091) #29	CFAP90 (ENSPCIG00000014077) #30	FASTKD3 (ENSPCIG00000013486) #31	MTRR (ENSPCIG00000013485) #32	ENSPCIG00000037244	SEMA5A (ENSPCIG00000023524) #33	ENSPCIG00000026977 #34	ENSPCIG00000032710 #34	ENSPCIG00000036637 #34	ENSPCIG00000032320
Wallaby	MODERN SPECIES	6959																ENSMEUG00000008560 #22
Tasmanian devil	MODERN SPECIES		SLC12A7 (ENSSHAG00000014012)	SLC6A19 (ENSSHAG00000015547)	SLC6A18 (ENSSHAG00000015730)	ENSSHAG00000015951 #8	CLPTM1L (ENSSHAG00000016099)	SLC6A3 (ENSSHAG00000016299) #9	LPCAT1 (ENSSHAG00000016583) #11	MRPL36 (ENSSHAG00000024894) #13	NDUFS6 (ENSSHAG00000028770) #14	IRX4 (ENSSHAG00000023225) #15	IRX2 (ENSSHAG00000001675) #16	IRX1 (ENSSHAG00000013463) #19	ENSSHAG00000018018	ADAMTS16 (ENSSHAG00000018320) #21	ENSSHAG00000027523	ENSSHAG00000018751 #22	MED10 (ENSSHAG00000020951) #23	ENSSHAG00000030712 #24	NSUN2 (ENSSHAG00000011056) #25	SRD5A1 (ENSSHAG00000025750) #26	TENT4A (ENSSHAG00000012100) #27	ADCY2 (ENSSHAG00000002581) #29	CFAP90 (ENSSHAG00000027105) #30	FASTKD3 (ENSSHAG00000006423) #31	MTRR (ENSSHAG00000006711) #32	ENSSHAG00000004959	SEMA5A (ENSSHAG00000025721) #33	ENSSHAG00000030169 #34	ATPSCKMT (ENSSHAG00000031295) #35	ENSSHAG00000025425 #36	CMBL (ENSSHAG00000027779) #37
Opossum	MODERN SPECIES	2	SLC6A19 (ENSMODG00000000905)	SLC6A18 (ENSMODG00000000921)	ENSMODG00000000966 #8	CLPTM1L (ENSMODG00000000991)	SLC6A3 (ENSMODG00000001344) #9	LPCAT1 (ENSMODG00000001420) #11	ENSMODG00000050731	MRPL36 (ENSMODG00000025120) #13	ENSMODG00000001425 #14	IRX4 (ENSMODG00000001437) #15	IRX2 (ENSMODG00000001446) #16	ENSMODG00000041368	IRX1 (ENSMODG00000001451) #19	ENSMODG00000040922	ADAMTS16 (ENSMODG00000001523) #21	ENSMODG00000001540 #22	ENSMODG00000043624	MED10 (ENSMODG00000002025) #23	ENSMODG00000028962 #24	NSUN2 (ENSMODG00000002039) #25	SRD5A1 (ENSMODG00000002043) #26	TENT4A (ENSMODG00000002052) #27	ADCY2 (ENSMODG00000002081) #29	ENSMODG00000028752	C5orf49 (ENSMODG00000044895) #30	FASTKD3 (ENSMODG00000002094) #31	MTRR (ENSMODG00000002110) #32	ENSMODG00000029155	ENSMODG00000025110	SEMA5A (ENSMODG00000002138) #33	ENSMODG00000002327
Platypus	MODERN SPECIES	86	FHOD3 (ENSOANG00000014458)	MOCOS (ENSOANG00000014461)	PTPN3 (ENSOANG00000014464)	EPB41L4B (ENSOANG00000001740)	TMEM245 (ENSOANG00000001742)	INO80C (ENSOANG00000001743)	GALNT1 (ENSOANG00000001744)	ENSOANG00000001745	RPRD1A (ENSOANG00000001746)	ENSOANG00000047544	ENSOANG00000043142 #14	IRX4 (ENSOANG00000039153) #15	IRX2 (ENSOANG00000001748) #16	IRX1 (ENSOANG00000001749) #19	ADAMTS16 (ENSOANG00000001750) #21	ENSOANG00000001751 #22	MED10 (ENSOANG00000001752) #23	ENSOANG00000001753 #24	NSUN2 (ENSOANG00000009243) #25	SRD5A1 (ENSOANG00000041870) #26	TENT4A (ENSOANG00000011579) #27	ADCY2 (ENSOANG00000011580) #29	C5orf49 (ENSOANG00000036348) #30	MTRR (ENSOANG00000011583) #32	SEMA5A (ENSOANG00000011586) #33	ATPSCKMT (ENSOANG00000011590) #35	CCT5 (ENSOANG00000011592) #36	CMBL (ENSOANG00000011594) #37	MARCHF6 (ENSOANG00000011595)	ROPN1L (ENSOANG00000011597)	ENSOANG00000011598
Sauria	ANCESTRAL SPECIES		ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00390000000183.g.a #37	ENSGT00390000000183.g.b #37
Lepidosauria	DUPLICATION
Lepidosauria	ANCESTRAL SPECIES	105				ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT01030000235349	ENSGT00390000014771.a #35	ENSGT00550000074988 #36
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000156996
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000164218	ENSGT00940000166261.a
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000011409	ENSPMRG00000011548	TERT (ENSPMRG00000011747) #8	CLPTM1L (ENSPMRG00000011767)	LPCAT1 (ENSPMRG00000011784) #11	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794) #14	ENSPMRG00000011796 #15	ENSPMRG00000011802 #16	IRX2 (ENSPMRG00000011806) #16	ENSPMRG00000011810	IRX1 (ENSPMRG00000011814) #19	ADAMTS16 (ENSPMRG00000011831) #21	ENSPMRG00000011923	ENSPMRG00000011964 #22	ENSPMRG00000011956 #22	MED10 (ENSPMRG00000011969) #23	UBE2QL1 (ENSPMRG00000011973) #24	NSUN2 (ENSPMRG00000012047) #25	SRD5A1 (ENSPMRG00000012693) #26	NAA16 (ENSPMRG00000012722)	ENSPMRG00000012863	RGCC (ENSPMRG00000012868)	VWA8 (ENSPMRG00000012925)	DGKH (ENSPMRG00000013494)	AKAP11 (ENSPMRG00000014100)	TNFSF11 (ENSPMRG00000014191)	ENSPMRG00000014214	DNAJC15 (ENSPMRG00000005799)	ENOX1 (ENSPMRG00000005813)	ENSPMRG00000005845
Argentine black and white tegu	MODERN SPECIES	36	SLC12A7 (ENSSMRG00000015175)	ENSSMRG00000015179	SLC6A19 (ENSSMRG00000015180)	SLC6A18 (ENSSMRG00000015183)	TERT (ENSSMRG00000015501) #8	CLPTM1L (ENSSMRG00000015502)	LPCAT1 (ENSSMRG00000015505) #11	ENSSMRG00000015507	ENSSMRG00000015508 #14	IRX4 (ENSSMRG00000015509) #15	IRX2 (ENSSMRG00000015513) #16	ENSSMRG00000015516	IRX1 (ENSSMRG00000015517) #19	ENSSMRG00000015520	ADAMTS16 (ENSSMRG00000015527) #21	ICE1 (ENSSMRG00000015530) #22	MED10 (ENSSMRG00000015532) #23	UBE2QL1 (ENSSMRG00000015533) #24	NSUN2 (ENSSMRG00000015535) #25	SRD5A1 (ENSSMRG00000015538) #26	TENT4A (ENSSMRG00000015539) #27	ADCY2 (ENSSMRG00000015544) #29	ENSSMRG00000016193	CFAP90 (ENSSMRG00000016195) #30	FASTKD3 (ENSSMRG00000016197) #31	MTRR (ENSSMRG00000016199) #32	SEMA5A (ENSSMRG00000016201) #33	ATPSCKMT (ENSSMRG00000016204) #35	CCT5 (ENSSMRG00000016206) #36	ENSSMRG00000016209	CST3 (ENSSMRG00000016211)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Indian cobra	MODERN SPECIES	2	TMEFF1 (ENSNNAG00000001223)	CAVIN4 (ENSNNAG00000001218)	SLC12A7 (ENSNNAG00000001119)	SLC6A19 (ENSNNAG00000001042)	SLC6A18 (ENSNNAG00000000999)	TERT (ENSNNAG00000000941) #8	CLPTM1L (ENSNNAG00000000922)	LPCAT1 (ENSNNAG00000000898) #11	ENSNNAG00000000889	NDUFS6 (ENSNNAG00000000877) #14	IRX4 (ENSNNAG00000000859) #15	IRX2 (ENSNNAG00000000840) #16	IRX1 (ENSNNAG00000000813) #19	ADAMTS16 (ENSNNAG00000014273) #21	ENSNNAG00000014247	ENSNNAG00000014147 #22	MED10 (ENSNNAG00000014120) #23	UBE2QL1 (ENSNNAG00000014111) #24	NSUN2 (ENSNNAG00000014006) #25	SRD5A1 (ENSNNAG00000013987) #26	TENT4A (ENSNNAG00000013975) #27	ADCY2 (ENSNNAG00000012796) #29	CFAP90 (ENSNNAG00000012693) #30	FASTKD3 (ENSNNAG00000012636) #31	MTRR (ENSNNAG00000012393) #32	SEMA5A (ENSNNAG00000012300) #33	ENSNNAG00000012269	CCT5 (ENSNNAG00000012242) #36	ENSNNAG00000012223	ENSNNAG00000012207	ENSNNAG00000012195
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000156996
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312	ENSGT00940000155999
Eastern brown snake	MODERN SPECIES	15	CAVIN4 (ENSPTXG00000004134)	SLC12A7 (ENSPTXG00000004132)	SLC6A19 (ENSPTXG00000004129)	ENSPTXG00000004128	TERT (ENSPTXG00000004127) #8	ENSPTXG00000004126	CLPTM1L (ENSPTXG00000004125)	LPCAT1 (ENSPTXG00000004123) #11	ENSPTXG00000004122	NDUFS6 (ENSPTXG00000004121) #14	IRX4 (ENSPTXG00000004120) #15	IRX2 (ENSPTXG00000004119) #16	IRX1 (ENSPTXG00000004118) #19	ADAMTS16 (ENSPTXG00000004117) #21	ENSPTXG00000004116 #22	ENSPTXG00000004115 #22	MED10 (ENSPTXG00000004114) #23	UBE2QL1 (ENSPTXG00000004113) #24	NSUN2 (ENSPTXG00000003936) #25	SRD5A1 (ENSPTXG00000003935) #26	TENT4A (ENSPTXG00000003934) #27	ADCY2 (ENSPTXG00000003858) #29	CFAP90 (ENSPTXG00000003856) #30	FASTKD3 (ENSPTXG00000003854) #31	MTRR (ENSPTXG00000003852) #32	SEMA5A (ENSPTXG00000003851) #33	ATPSCKMT (ENSPTXG00000003849) #35	CCT5 (ENSPTXG00000003847) #36	ENSPTXG00000003846	ENSPTXG00000003845	FOXA2 (ENSPTXG00000003844)
Mainland tiger snake	MODERN SPECIES	45	ABITRAM (ENSNSUG00000010032)	SLC39A6 (ENSNSUG00000010034)	TMEFF1 (ENSNSUG00000010036)	CAVIN4 (ENSNSUG00000010038)	SLC12A7 (ENSNSUG00000010041)	SLC6A19 (ENSNSUG00000010044)	TERT (ENSNSUG00000010047) #8	CLPTM1L (ENSNSUG00000010147)	LPCAT1 (ENSNSUG00000010206) #11	ENSNSUG00000010207	ENSNSUG00000010208 #14	IRX4 (ENSNSUG00000010212) #15	IRX2 (ENSNSUG00000010220) #16	IRX1 (ENSNSUG00000010225) #19	ADAMTS16 (ENSNSUG00000010227) #21	ENSNSUG00000010240 #22	MED10 (ENSNSUG00000010241) #23	UBE2QL1 (ENSNSUG00000010242) #24	NSUN2 (ENSNSUG00000010245) #25	SRD5A1 (ENSNSUG00000010410) #26	ENSNSUG00000010413	TENT4A (ENSNSUG00000010414) #27	ADCY2 (ENSNSUG00000010421) #29	ENSNSUG00000010690 #30	FASTKD3 (ENSNSUG00000010691) #31	MTRR (ENSNSUG00000010692) #32	SEMA5A (ENSNSUG00000010721) #33	ATPSCKMT (ENSNSUG00000010722) #35	CCT5 (ENSNSUG00000010732) #36	ENSNSUG00000010733	ENSNSUG00000010734
Blue-lipped sea krait	MODERN SPECIES	10728																ENSLLTG00000011284 #22
Lizard	MODERN SPECIES	825															ADAMTS16 (ENSACAG00000000648) #21	ICE1 (ENSACAG00000039643) #22	MED10 (ENSACAG00000000792) #23	UBE2QL1 (ENSACAG00000038943) #24	ENSACAG00000005628	ENSACAG00000005665	HENMT1 (ENSACAG00000005696)	ENSACAG00000028682	ENSACAG00000042891	STXBP3 (ENSACAG00000005770)	ENSACAG00000037276	ENSACAG00000036406	GPSM2 (ENSACAG00000006029)	CLCC1 (ENSACAG00000006088)	WDR47 (ENSACAG00000006120)	CAMSAP2 (ENSACAG00000006193)	DDX59 (ENSACAG00000006225)
tuatara	MODERN SPECIES	1802														ADAMTS16 (ENSSPUG00000014801) #21	ENSSPUG00000014789	ENSSPUG00000014759 #22
Lepidosauria	ANCESTRAL SPECIES																	ENSGT00950000183199.b.b #22
Episquamata	ANCESTRAL SPECIES	1	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000164218
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00940000156387	ENSGT00940000160714	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00390000010866 #13	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000156387	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000156387.i	ENSGT00940000160714.c	ENSGT00950000182910.a.b	ENSGT00940000157657	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT01030000234574.A.a #11	ENSGT00940000173658	ENSGT00390000015775 #14	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429 #19	ENSGT00940000159433 #21	ENSGT00950000183199.b.b #22	ENSGT00950000183199.b.a #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a.h #35	ENSGT00550000074988 #36	ENSGT00940000154755	ENSGT00940000167312
Eastern brown snake	MODERN SPECIES	15	TMEFF1 (ENSPTXG00000004135)	CAVIN4 (ENSPTXG00000004134)	SLC12A7 (ENSPTXG00000004132)	SLC6A19 (ENSPTXG00000004129)	ENSPTXG00000004128	TERT (ENSPTXG00000004127) #8	ENSPTXG00000004126	CLPTM1L (ENSPTXG00000004125)	LPCAT1 (ENSPTXG00000004123) #11	ENSPTXG00000004122	NDUFS6 (ENSPTXG00000004121) #14	IRX4 (ENSPTXG00000004120) #15	IRX2 (ENSPTXG00000004119) #16	IRX1 (ENSPTXG00000004118) #19	ADAMTS16 (ENSPTXG00000004117) #21	ENSPTXG00000004116 #22	ENSPTXG00000004115 #22	MED10 (ENSPTXG00000004114) #23	UBE2QL1 (ENSPTXG00000004113) #24	NSUN2 (ENSPTXG00000003936) #25	SRD5A1 (ENSPTXG00000003935) #26	TENT4A (ENSPTXG00000003934) #27	ADCY2 (ENSPTXG00000003858) #29	CFAP90 (ENSPTXG00000003856) #30	FASTKD3 (ENSPTXG00000003854) #31	MTRR (ENSPTXG00000003852) #32	SEMA5A (ENSPTXG00000003851) #33	ATPSCKMT (ENSPTXG00000003849) #35	CCT5 (ENSPTXG00000003847) #36	ENSPTXG00000003846	ENSPTXG00000003845
Laterata	ANCESTRAL SPECIES																	ENSGT00950000183199.b.b #22
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000011377	ENSPMRG00000011409	ENSPMRG00000011548	TERT (ENSPMRG00000011747) #8	CLPTM1L (ENSPMRG00000011767)	LPCAT1 (ENSPMRG00000011784) #11	ENSPMRG00000011792	NDUFS6 (ENSPMRG00000011794) #14	ENSPMRG00000011796 #15	ENSPMRG00000011802 #16	IRX2 (ENSPMRG00000011806) #16	ENSPMRG00000011810	IRX1 (ENSPMRG00000011814) #19	ADAMTS16 (ENSPMRG00000011831) #21	ENSPMRG00000011923	ENSPMRG00000011964 #22	ENSPMRG00000011956 #22	MED10 (ENSPMRG00000011969) #23	UBE2QL1 (ENSPMRG00000011973) #24	NSUN2 (ENSPMRG00000012047) #25	SRD5A1 (ENSPMRG00000012693) #26	NAA16 (ENSPMRG00000012722)	ENSPMRG00000012863	RGCC (ENSPMRG00000012868)	VWA8 (ENSPMRG00000012925)	DGKH (ENSPMRG00000013494)	AKAP11 (ENSPMRG00000014100)	TNFSF11 (ENSPMRG00000014191)	ENSPMRG00000014214	DNAJC15 (ENSPMRG00000005799)	ENOX1 (ENSPMRG00000005813)
Archelosauria	ANCESTRAL SPECIES	5															ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.g.b #37
Cryptodira	ANCESTRAL SPECIES	46	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #19	ENSGT00940000161198 #16	ENSGT00940000158596 #15	ENSGT00390000015775 #14	ENSGT00390000010866 #13	ENSGT01030000234574.A.a #11	ENSGT00530000063461.A	ENSGT00390000018531 #8	ENSGT00940000158906	ENSGT00940000154896	ENSGT00940000157657	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.h #37
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #19	ENSGT00940000161198 #16	ENSGT00940000158596 #15	ENSGT00390000015775 #14	ENSGT00390000010866 #13	ENSGT01030000234574.A.a #11	ENSGT00530000063461.A	ENSGT00390000018531 #8	ENSGT00940000158906	ENSGT00940000154896	ENSGT00940000156325	ENSGT00940000157657	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.h #37
Emydidae	ANCESTRAL SPECIES	58	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #19	ENSGT00940000161198 #16	ENSGT00940000158596 #15	ENSGT00390000015775 #14	ENSGT00390000010866 #13	ENSGT01030000234574.A.a #11	ENSGT00530000063461.A	ENSGT00390000018531 #8	ENSGT00940000158906	ENSGT00940000154896	ENSGT00940000157657	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.h #37
Three-toed box turtle	DUPLICATION
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	2575																ENSTMTG00000013521 #22
Three-toed box turtle	MODERN SPECIES	2572																ENSTMTG00000013482 #22
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	280													ENSTMTG00000009916	ENSTMTG00000010300	ENSTMTG00000010347 #21	ENSTMTG00000010368 #22	ENSTMTG00000010389 #22	MED10 (ENSTMTG00000010416) #23	UBE2QL1 (ENSTMTG00000010432) #24	NSUN2 (ENSTMTG00000003351) #25	SRD5A1 (ENSTMTG00000003412) #26	ENSTMTG00000003488	TENT4A (ENSTMTG00000003526) #27	ADCY2 (ENSTMTG00000003668) #29	CFAP90 (ENSTMTG00000004150) #30	FASTKD3 (ENSTMTG00000004174) #31	MTRR (ENSTMTG00000004193) #32	SEMA5A (ENSTMTG00000004239) #33	ATPSCKMT (ENSTMTG00000004376) #35	CCT5 (ENSTMTG00000004387) #36	SBK2 (ENSTMTG00000004421)
Three-toed box turtle	MODERN SPECIES	280												ENSTMTG00000009916	ENSTMTG00000010300	ENSTMTG00000010347 #21	ENSTMTG00000010368 #22	ENSTMTG00000010389 #22	MED10 (ENSTMTG00000010416) #23	UBE2QL1 (ENSTMTG00000010432) #24	NSUN2 (ENSTMTG00000003351) #25	SRD5A1 (ENSTMTG00000003412) #26	ENSTMTG00000003488	TENT4A (ENSTMTG00000003526) #27	ADCY2 (ENSTMTG00000003668) #29	CFAP90 (ENSTMTG00000004150) #30	FASTKD3 (ENSTMTG00000004174) #31	MTRR (ENSTMTG00000004193) #32	SEMA5A (ENSTMTG00000004239) #33	ATPSCKMT (ENSTMTG00000004376) #35	CCT5 (ENSTMTG00000004387) #36	SBK2 (ENSTMTG00000004421)	ENSTMTG00000004453 #37
painted turtle	MODERN SPECIES	1159																ENSCPBG00000016289 #22
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000155783	ENSGT00940000157173	ENSGT00940000157664	ENSGT00940000160429 #19	ENSGT00940000161198 #16	ENSGT00940000158596 #15	ENSGT00390000015775 #14	ENSGT00390000010866 #13	ENSGT01030000234574.A.a #11	ENSGT00530000063461.A	ENSGT00390000018531 #8	ENSGT00940000158906	ENSGT00940000154896	ENSGT00940000156325	ENSGT00940000157657	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.h #37
Goode s thornscrub tortoise	MODERN SPECIES	11	GALNT12 (ENSGEVG00005001835)	ANKS6 (ENSGEVG00005001910)	IRX1 (ENSGEVG00005001973) #19	IRX2 (ENSGEVG00005001979) #16	IRX4 (ENSGEVG00005001991) #15	NDUFS6 (ENSGEVG00005002002) #14	MRPL36 (ENSGEVG00005002011) #13	LPCAT1 (ENSGEVG00005002021) #11	CLPTM1L (ENSGEVG00005002056)	TERT (ENSGEVG00005002124) #8	SLC6A18 (ENSGEVG00005002163)	SLC6A19 (ENSGEVG00005002227)	ENSGEVG00005002238	NFX1 (ENSGEVG00005002297)	SLC12A7 (ENSGEVG00005002517)	ICE1 (ENSGEVG00005002555) #22	MED10 (ENSGEVG00005002588) #23	UBE2QL1 (ENSGEVG00005002594) #24	NSUN2 (ENSGEVG00005002603) #25	SRD5A1 (ENSGEVG00005002624) #26	ENSGEVG00005002633	TENT4A (ENSGEVG00005002646) #27	ADCY2 (ENSGEVG00005002733) #29	ENSGEVG00005002928	CFAP90 (ENSGEVG00005002941) #30	FASTKD3 (ENSGEVG00005002955) #31	MTRR (ENSGEVG00005002968) #32	ENSGEVG00005002987	SEMA5A (ENSGEVG00005003004) #33	ATPSCKMT (ENSGEVG00005003039) #35	CCT5 (ENSGEVG00005003051) #36
Abingdon island giant tortoise	MODERN SPECIES	2256													NFX1 (ENSCABG00000008184)	ENSCABG00000008899	ENSCABG00000008902	ENSCABG00000008906 #22
Chinese turtle	MODERN SPECIES	1365															ENSPSIG00000008803	ENSPSIG00000014439 #22	ENSPSIG00000000027	MED10 (ENSPSIG00000015211) #23	UBE2QL1 (ENSPSIG00000015214) #24	NSUN2 (ENSPSIG00000015282) #25	SRD5A1 (ENSPSIG00000015950) #26	TENT4A (ENSPSIG00000015964) #27	ENSPSIG00000005586	ENSPSIG00000005902	ENSPSIG00000006888	ENSPSIG00000007164	FBXO3 (ENSPSIG00000007269)	LMO2 (ENSPSIG00000007568)	CAPRIN1 (ENSPSIG00000007750)
Archosauria	ANCESTRAL SPECIES		ENSGT00530000067915	ENSGT00390000020276.rb	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00530000063884.a	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.g.b #37
Australian saltwater crocodile	MODERN SPECIES		NR4A3 (ENSCPRG00005013476)	SEC61B (ENSCPRG00005013467)	ALG2 (ENSCPRG00005013466)	ENSCPRG00005013457	GLIPR2 (ENSCPRG00005013455)	ENSCPRG00005013453	RECK (ENSCPRG00005013445)	ENSCPRG00005013435	TGFBR1 (ENSCPRG00005013433)	ENSCPRG00005013429	SLC9A3 (ENSCPRG00005013422)	CEP72 (ENSCPRG00005013408)	TPPP (ENSCPRG00005013403)	SLC12A7 (ENSCPRG00005012667)	NFX1 (ENSCPRG00005012491)	ENSCPRG00005012478 #22	TNS3 (ENSCPRG00005012409)	IGFBP3 (ENSCPRG00005012380)	IGFBP1 (ENSCPRG00005012333)	ADCY1 (ENSCPRG00005012310)	RAMP3 (ENSCPRG00005012244)	PDIA4 (ENSCPRG00005012218)	EZH2 (ENSCPRG00005012115)	CUL1 (ENSCPRG00005012085)	CNTNAP2 (ENSCPRG00005012040)	TPK1 (ENSCPRG00005011870)	SEC61G (ENSCPRG00005011725)	ENSCPRG00005011724	EGFR (ENSCPRG00005011649)	LANCL2 (ENSCPRG00005011572)	VOPP1 (ENSCPRG00005011565)
Aves	ANCESTRAL SPECIES	24	ENSGT00550000075033	ENSGT00530000067915	ENSGT00390000020276.rb	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000162507.A	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT01030000234607.A.a.a.a #31	ENSGT00940000155822 #32	ENSGT00940000158036 #33	ENSGT00390000014771.a #35	ENSGT00550000074988 #36	ENSGT00940000161663	ENSGT00390000000183.g.a #37	ENSGT00390000000183.g.b #37
Neognathae	ANCESTRAL SPECIES		ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000164061	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Passeriformes	ANCESTRAL SPECIES		ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.a.b	ENSGT00960000190022	ENSGT00960000189317	ENSGT00940000153143.a.b.a.a.b	ENSGT00940000153143.a.b.a.a.a	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT00940000159827	ENSGT00390000005586	ENSGT00940000155331.A	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Great tit	MODERN SPECIES	11	RPS21 (ENSPMJG00000018126)	POU6F2 (ENSPMJG00000018124)	VPS41 (ENSPMJG00000018123)	AMPH (ENSPMJG00000018122)	ENSPMJG00000018121	ENSPMJG00000018120	ENSPMJG00000018067	LRRFIP2 (ENSPMJG00000018066)	GOLGA4 (ENSPMJG00000018065)	ITGA9 (ENSPMJG00000018064)	NEUROD6 (ENSPMJG00000018063)	ENSPMJG00000018062	PDE1C (ENSPMJG00000018061)	ENSPMJG00000018060	NFX1 (ENSPMJG00000018059)	ENSPMJG00000018057 #22	HUS1 (ENSPMJG00000018055)	YAE1 (ENSPMJG00000018053)	ENSPMJG00000018052	RALA (ENSPMJG00000018050)	CDK13 (ENSPMJG00000018048)	MPLKIP (ENSPMJG00000018047)	SUGCT (ENSPMJG00000018046)	INHBA (ENSPMJG00000018042)	GLI3 (ENSPMJG00000018041)	C7orf25 (ENSPMJG00000018040)	PSMA2 (ENSPMJG00000018039)	MRPL32 (ENSPMJG00000018038)	TNS3 (ENSPMJG00000018037)	COA1 (ENSPMJG00000018036)	STK17A (ENSPMJG00000018035)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000156175	ENSGT00390000000481	ENSGT00950000182882.A.b.a	ENSGT00940000153143.a.b.a.b	ENSGT00960000190022	ENSGT00960000189317	ENSGT00940000153143.a.b.a.a.b	ENSGT00530000063564.a	ENSGT00730000111139	ENSGT00940000156503	ENSGT00940000159827	ENSGT00390000005586	ENSGT00940000155331.A	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Passeriformes_g	ANCESTRAL SPECIES	3												ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Passeroidea	ANCESTRAL SPECIES	2												ENSGT00940000155331.A	ENSGT00390000005586	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000158302.e	ENSGT00940000156394	ENSGT00390000018540	ENSGT00530000063631.a
Zebra finch	MODERN SPECIES	12	ENSTGUG00000026378	ADNP2 (ENSTGUG00000006688)	RECK (ENSTGUG00000006692)	TGFBR1 (ENSTGUG00000006726)	COL15A1 (ENSTGUG00000025718)	TRIP13 (ENSTGUG00000006756)	BRD9 (ENSTGUG00000006776)	TPPP (ENSTGUG00000006796)	SLC9A3 (ENSTGUG00000006804)	LRRC14B (ENSTGUG00000006854)	PDE1C (ENSTGUG00000006857)	PPP1R17 (ENSTGUG00000006926)	ENSTGUG00000019076	ENSTGUG00000006931	NFX1 (ENSTGUG00000007055)	ENSTGUG00000007087 #22	HUS1 (ENSTGUG00000007091)	TNS3 (ENSTGUG00000007104)	RAMP3 (ENSTGUG00000025072)	ADCY1 (ENSTGUG00000007142)	IGFBP1 (ENSTGUG00000007176)	IGFBP3 (ENSTGUG00000028736)	CDH18 (ENSTGUG00000007189)	BASP1 (ENSTGUG00000007269)	MYO10 (ENSTGUG00000007271)	ZNF622 (ENSTGUG00000007377)	MARCHF11 (ENSTGUG00000007392)	FBXL7 (ENSTGUG00000027230)	ANKH (ENSTGUG00000007404)	OTULIN (ENSTGUG00000007427)	OTULINL (ENSTGUG00000007437)
Common canary	MODERN SPECIES	36	CMTM3 (ENSSCAG00000010838)	TK2 (ENSSCAG00000010828)	ENSSCAG00000010823	CDH5 (ENSSCAG00000010812)	CDH11 (ENSSCAG00000010804)	ENSSCAG00000010799	ENSSCAG00000010795	SNRPA (ENSSCAG00000010792)	ENSSCAG00000010787	NEUROD6 (ENSSCAG00000010784)	ENSSCAG00000010778	PDE1C (ENSSCAG00000010755)	PPP1R17 (ENSSCAG00000010734)	ENSSCAG00000010722	NFX1 (ENSSCAG00000010694)	ENSSCAG00000010663 #22	ENSSCAG00000010553	ARPP21 (ENSSCAG00000010517)	STAC (ENSSCAG00000010507)	DCLK3 (ENSSCAG00000010500)	TRANK1 (ENSSCAG00000010488)	MLH1 (ENSSCAG00000010474)	STARD3NL (ENSSCAG00000010471)	EPDR1 (ENSSCAG00000010467)	SFRP4 (ENSSCAG00000010462)	ENSSCAG00000010456	ENSSCAG00000010449	ENSSCAG00000010445	GPR141 (ENSSCAG00000010442)	ELMO1 (ENSSCAG00000010176)	AOAH (ENSSCAG00000010102)
Medium ground finch	MODERN SPECIES	142												PPP1R17 (ENSGFOG00000002988)	ENSGFOG00000002968	ENSGFOG00000002808	NFX1 (ENSGFOG00000002757)	ENSGFOG00000002742 #22	HUS1 (ENSGFOG00000002727)	ENSGFOG00000002721	TNS3 (ENSGFOG00000002178)	ENSGFOG00000014580	IGFBP1 (ENSGFOG00000014576)	ADCY1 (ENSGFOG00000014571)	ENSGFOG00000014568	RAMP3 (ENSGFOG00000014564)
Flycatcher	MODERN SPECIES	11	ENSFALG00000025369	YAE1 (ENSFALG00000027550)	POU6F2 (ENSFALG00000005224)	VPS41 (ENSFALG00000005238)	AMPH (ENSFALG00000012192)	ENSFALG00000012205	ENSFALG00000023119	LRRFIP2 (ENSFALG00000012219)	ENSFALG00000013077	ITGA9 (ENSFALG00000013091)	ENSFALG00000014089	PDE1C (ENSFALG00000013120)	PPP1R17 (ENSFALG00000023160)	ENSFALG00000013128	ENSFALG00000013143	ENSFALG00000026671 #22	HUS1 (ENSFALG00000013176)	TNS3 (ENSFALG00000013179)	ENSFALG00000028134	ENSFALG00000013184	IGFBP1 (ENSFALG00000013189)	ADCY1 (ENSFALG00000013204)	RAMP3 (ENSFALG00000013222)	ENSFALG00000013224	SLC9A3 (ENSFALG00000013226)	TPPP (ENSFALG00000024481)	ENSFALG00000024175	BRD9 (ENSFALG00000013234)	TRIP13 (ENSFALG00000013242)	ENSFALG00000013256	ENSFALG00000013285
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT00390000017432	ENSGT00950000183170.b.a	ENSGT00940000153875.c	ENSGT00940000158616	ENSGT01030000234531.C	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT01040000241072	ENSGT00530000063186.b.a
Golden eagle	MODERN SPECIES	9	ENSACCG00020011964	RBFA (ENSACCG00020011987)	ADNP2 (ENSACCG00020012003)	RECK (ENSACCG00020012029)	ENSACCG00020012067	TGFBR1 (ENSACCG00020012084)	ENSACCG00020012112	ENSACCG00020012183	TRIP13 (ENSACCG00020012230)	BRD9 (ENSACCG00020012343)	TPPP (ENSACCG00020012482)	SLC9A3 (ENSACCG00020012518)	LRRC14B (ENSACCG00020012554)	ENSACCG00020012615	NFX1 (ENSACCG00020012785)	ENSACCG00020012901 #22	HUS1 (ENSACCG00020012940)	TNS3 (ENSACCG00020012993)	IGFBP3 (ENSACCG00020013050)	IGFBP1 (ENSACCG00020013063)	ADCY1 (ENSACCG00020013088)	RAMP3 (ENSACCG00020013106)
Kakapo	MODERN SPECIES		ENSSHBG00005002797	ENSSHBG00005002856	CPNE4 (ENSSHBG00005002917)	MRPL3 (ENSSHBG00005002927)	NEK11 (ENSSHBG00005002944)	ENSSHBG00005002958	ENSSHBG00005002972	LARS2 (ENSSHBG00005003085)	LIMD1 (ENSSHBG00005003457)	SACM1L (ENSSHBG00005003481)	SNRPD1 (ENSSHBG00005003518)	SLC6A20 (ENSSHBG00005003531)	LZTFL1 (ENSSHBG00005003574)	ENSSHBG00005003595	NFX1 (ENSSHBG00005003734)	ENSSHBG00005004278 #22	HUS1 (ENSSHBG00005004285)	TNS3 (ENSSHBG00005004318)	IGFBP3 (ENSSHBG00005004372)	IGFBP1 (ENSSHBG00005004376)	ENSSHBG00005004383	ENSSHBG00005004393	RAMP3 (ENSSHBG00005004397)	PDIA4 (ENSSHBG00005004401)	EZH2 (ENSSHBG00005004420)	CUL1 (ENSSHBG00005004427)	CNTNAP2 (ENSSHBG00005004659)	TPK1 (ENSSHBG00005013825)	ENSSHBG00005013830	SEC61G (ENSSHBG00005013838)	ENSSHBG00005000018
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000158957	ENSGT00730000111020.b.a	ENSGT00390000007302	ENSGT00940000159220	ENSGT00940000156479.a	ENSGT00940000156206	ENSGT00940000156595	ENSGT00390000005939.a.a	ENSGT00940000156245	ENSGT00390000017955.d	ENSGT00390000007346	ENSGT00940000153253.a	ENSGT00390000001263	ENSGT00940000154772.c.b	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Pink-footed goose	MODERN SPECIES	202													PAK1IP1 (ENSABRG00000013624)	ENSABRG00000013619	NFX1 (ENSABRG00000013561)	ENSABRG00000013533 #22	HUS1 (ENSABRG00000013525)	TNS3 (ENSABRG00000013486)	IGFBP3 (ENSABRG00000013479)	IGFBP1 (ENSABRG00000013476)	ADCY1 (ENSABRG00000013454)
Duck	MODERN SPECIES	10	ENSAPLG00000030801	RNF182 (ENSAPLG00000001505)	CD83 (ENSAPLG00000020318)	JARID2 (ENSAPLG00000004296)	DTNBP1 (ENSAPLG00000013450)	ENSAPLG00000025659	MYLIP (ENSAPLG00000008040)	GMPR (ENSAPLG00000007973)	ATXN1 (ENSAPLG00000029862)	RBM24 (ENSAPLG00000007828)	CAP2 (ENSAPLG00000007343)	FAM8A1 (ENSAPLG00000020765)	PAK1IP1 (ENSAPLG00000005241)	ENSAPLG00000005452	NFX1 (ENSAPLG00000005524)	ENSAPLG00000027178 #22	HUS1 (ENSAPLG00000006454)	TNS3 (ENSAPLG00000006520)	IGFBP3 (ENSAPLG00000016379)	IGFBP1 (ENSAPLG00000025569)	ADCY1 (ENSAPLG00000001037)	RAMP3 (ENSAPLG00000023187)	PDIA4 (ENSAPLG00000010645)	EZH2 (ENSAPLG00000010543)	CUL1 (ENSAPLG00000010478)	CNTNAP2 (ENSAPLG00000010463)	ENSAPLG00000022224	ENSAPLG00000017666	TPK1 (ENSAPLG00000002852)	ENSAPLG00000021755	SEC61G (ENSAPLG00000002944)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT00940000158302.e	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Japanese quail	DUPLICATION
Japanese quail	MODERN SPECIES	11	ENSCJPG00005017997	ENSCJPG00005017998	RBFA (ENSCJPG00005017999)	ADNP2 (ENSCJPG00005018000)	RECK (ENSCJPG00005018001)	TGFBR1 (ENSCJPG00005018020)	ENSCJPG00005018021	LRRC14B (ENSCJPG00005018023)	SLC9A3 (ENSCJPG00005018024)	TPPP (ENSCJPG00005018028)	BRD9 (ENSCJPG00005018029)	TRIP13 (ENSCJPG00005018033)	SLC12A7 (ENSCJPG00005018048)	NFX1 (ENSCJPG00005018637)	ENSCJPG00005018728 #22	ENSCJPG00005018729 #22	HUS1 (ENSCJPG00005018730)	TNS3 (ENSCJPG00005018731)	IGFBP3 (ENSCJPG00005019177)	IGFBP1 (ENSCJPG00005019178)	ADCY1 (ENSCJPG00005000050)	ENSCJPG00005000104	ENSCJPG00005000137	SEC61G (ENSCJPG00005000142)	EGFR (ENSCJPG00005000163)	LANCL2 (ENSCJPG00005000198)	VOPP1 (ENSCJPG00005000210)	BLVRA (ENSCJPG00005000222)	ENSCJPG00005000233	STK17A (ENSCJPG00005000239)	HECW1 (ENSCJPG00005000252)
Japanese quail	MODERN SPECIES	11	ENSCJPG00005017995	ENSCJPG00005017997	ENSCJPG00005017998	RBFA (ENSCJPG00005017999)	ADNP2 (ENSCJPG00005018000)	RECK (ENSCJPG00005018001)	TGFBR1 (ENSCJPG00005018020)	ENSCJPG00005018021	LRRC14B (ENSCJPG00005018023)	SLC9A3 (ENSCJPG00005018024)	TPPP (ENSCJPG00005018028)	BRD9 (ENSCJPG00005018029)	TRIP13 (ENSCJPG00005018033)	SLC12A7 (ENSCJPG00005018048)	NFX1 (ENSCJPG00005018637)	ENSCJPG00005018728 #22	ENSCJPG00005018729 #22	HUS1 (ENSCJPG00005018730)	TNS3 (ENSCJPG00005018731)	IGFBP3 (ENSCJPG00005019177)	IGFBP1 (ENSCJPG00005019178)	ADCY1 (ENSCJPG00005000050)	ENSCJPG00005000104	ENSCJPG00005000137	SEC61G (ENSCJPG00005000142)	EGFR (ENSCJPG00005000163)	LANCL2 (ENSCJPG00005000198)	VOPP1 (ENSCJPG00005000210)	BLVRA (ENSCJPG00005000222)	ENSCJPG00005000233	STK17A (ENSCJPG00005000239)
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00390000010779.a.b.a	ENSGT00940000162740.f.a	ENSGT00940000162740.f.b	ENSGT00940000162740.e	ENSGT00390000011362	ENSGT00530000063631.a	ENSGT00390000018540	ENSGT00940000156394	ENSGT01030000234531.C	ENSGT00940000158616	ENSGT00940000153875.c	ENSGT00950000183170.b.a	ENSGT00390000017432	ENSGT00940000157657	ENSGT00940000156325	ENSGT00950000183199.b #22	ENSGT00390000000706	ENSGT00940000156328.b	ENSGT00940000158092	ENSGT00940000157394	ENSGT00940000154872.C	ENSGT00940000161026	ENSGT00940000157738	ENSGT00940000155013	ENSGT00940000154774	ENSGT00940000154516.b	ENSGT00390000016016.A	ENSGT00390000001319	ENSGT00940000155450	ENSGT00530000063186.b.a	ENSGT00390000015821
Turkey	DUPLICATION
Turkey	MODERN SPECIES	22													ENSMGAG00000001054	ENSMGAG00000022268	ENSMGAG00000001256	ENSMGAG00000020769 #22	ENSMGAG00000001202	ENSMGAG00000022584 #22	ENSMGAG00000001538	PDIA4 (ENSMGAG00000001335)	EZH2 (ENSMGAG00000001370)	CUL1 (ENSMGAG00000001436)	CNTNAP2 (ENSMGAG00000001546)	TPK1 (ENSMGAG00000001560)	ENSMGAG00000001792	ENSMGAG00000017931	SLC12A7 (ENSMGAG00000001576)	TRIP13 (ENSMGAG00000001806)	BRD9 (ENSMGAG00000001853)	TPPP (ENSMGAG00000001895)	ENSMGAG00000001943
Turkey	MODERN SPECIES	22											ENSMGAG00000001054	ENSMGAG00000022268	ENSMGAG00000001256	ENSMGAG00000020769 #22	ENSMGAG00000001202	ENSMGAG00000022584 #22	ENSMGAG00000001538	PDIA4 (ENSMGAG00000001335)	EZH2 (ENSMGAG00000001370)	CUL1 (ENSMGAG00000001436)	CNTNAP2 (ENSMGAG00000001546)	TPK1 (ENSMGAG00000001560)	ENSMGAG00000001792	ENSMGAG00000017931	SLC12A7 (ENSMGAG00000001576)	TRIP13 (ENSMGAG00000001806)	BRD9 (ENSMGAG00000001853)	TPPP (ENSMGAG00000001895)	ENSMGAG00000001943	ENSMGAG00000001949	ENSMGAG00000002050
Chicken	MODERN SPECIES	11	ENSGALG00010008097	ENSGALG00010008091	ENSGALG00010008018	RBFA (ENSGALG00010008052)	ADNP2 (ENSGALG00010008011)	RECK (ENSGALG00010007982)	TGFBR1 (ENSGALG00010007951)	ENSGALG00010007936	LRRC14B (ENSGALG00010007929)	SLC9A3 (ENSGALG00010007655)	TPPP (ENSGALG00010007624)	BRD9 (ENSGALG00010007580)	TRIP13 (ENSGALG00010007567)	SLC12A7 (ENSGALG00010007521)	NFX1 (ENSGALG00010007479)	ENSGALG00010007118 #22	HUS1 (ENSGALG00010006912)	ENSGALG00010008452	TNS3 (ENSGALG00010008448)	IGFBP3 (ENSGALG00010008429)	IGFBP1 (ENSGALG00010008417)	ADCY1 (ENSGALG00010008388)	RAMP3 (ENSGALG00010008362)	PDIA4 (ENSGALG00010008340)	EZH2 (ENSGALG00010008330)	CUL1 (ENSGALG00010008300)	ENSGALG00010008281	ENSGALG00010008269	CNTNAP2 (ENSGALG00010008264)	ENSGALG00010008256	ENSGALG00010008253
African ostrich	MODERN SPECIES	281												PLEKHG4B (ENSSCUG00000006312)	LRRC14B (ENSSCUG00000006316)	ENSSCUG00000006358	NFX1 (ENSSCUG00000006429)	ICE1 (ENSSCUG00000006476) #22	MED10 (ENSSCUG00000006484) #23	UBE2QL1 (ENSSCUG00000006485) #24	NSUN2 (ENSSCUG00000006496) #25	SRD5A1 (ENSSCUG00000006504) #26	TENT4A (ENSSCUG00000006506) #27	ADCY2 (ENSSCUG00000000320) #29	CFAP90 (ENSSCUG00000000340) #30	FASTKD3 (ENSSCUG00000000343) #31	MTRR (ENSSCUG00000000347) #32	SEMA5A (ENSSCUG00000000357) #33	ATPSCKMT (ENSSCUG00000000370) #35	CCT5 (ENSSCUG00000000372) #36	ENSSCUG00000000381 #37	ENSSCUG00000000387 #37	MARCHF6 (ENSSCUG00000000393)
Anura	ANCESTRAL SPECIES	463																ENSGT00950000183199.b #22	ENSGT00940000157173	ENSGT00940000163607
Leishan spiny toad	MODERN SPECIES	8	ENSLLEG00000018329	ENSLLEG00000018396	ADAMTS16 (ENSLLEG00000018466) #21	ENSLLEG00000019170	ENSLLEG00000019189	ENSLLEG00000019214	ENSLLEG00000019264	ENSLLEG00000019756	EXOC3 (ENSLLEG00000019995)	ANKS6 (ENSLLEG00000020112)	PDCD6 (ENSLLEG00000020241)	ENSLLEG00000020304	PIGM (ENSLLEG00000020327)	ENSLLEG00000020388	CRTAP (ENSLLEG00000020422)	ENSLLEG00000020580 #22	GALNT12 (ENSLLEG00000020928)	ENSLLEG00000021079	ENSLLEG00000021270	ENSLLEG00000021294	ENSLLEG00000021366	ENSLLEG00000021386	PDE1C (ENSLLEG00000021436)	ENSLLEG00000022109	ENSLLEG00000022145	ENSLLEG00000022207	ENSLLEG00000022233	ENSLLEG00000022338	ENSLLEG00000022352	ENSLLEG00000022370	ENSLLEG00000022398
Frog	MODERN SPECIES	6	ENSXETG00000043416	ENSXETG00000043092	MRPL36 (ENSXETG00000040435) #13	ndufs6 (ENSXETG00000008889) #14	irx4 (ENSXETG00000008892) #15	irx2 (ENSXETG00000012653) #16	ENSXETG00000047167	irx1 (ENSXETG00000006958) #19	ENSXETG00000043083	ENSXETG00000043926	ENSXETG00000046413	adamts16 (ENSXETG00000019022) #21	ENSXETG00000040484	ENSXETG00000046469	exoc3 (ENSXETG00000006195)	ice1 (ENSXETG00000037852) #22	galnt12 (ENSXETG00000027025)	galnt4 (ENSXETG00000006191)	anks6 (ENSXETG00000006189)	ENSXETG00000046001	pdcd6 (ENSXETG00000027021)	pigm (ENSXETG00000006188)	ahrr (ENSXETG00000006186)	znfx1.2 (ENSXETG00000003560)	ENSXETG00000025628	cmbl (ENSXETG00000025629) #37	marchf6 (ENSXETG00000003553)	ropn1l (ENSXETG00000003552)	ENSXETG00000042529	ankrd33b (ENSXETG00000038702)	dap (ENSXETG00000025633)
Coelacanth	MODERN SPECIES	948													ENSLACG00000003061	ENSLACG00000008777	ENSLACG00000008868	ENSLACG00000009652 #22	ENSLACG00000010569	ENSLACG00000010596	MED10 (ENSLACG00000011409) #23	ENSLACG00000012908	ENSLACG00000012985	ENSLACG00000013379
Actinopterygii	ANCESTRAL SPECIES	2	ENSGT00400000022168.a	ENSGT00940000170761	ENSGT00950000183094.b.b	ENSGT00510000049601	ENSGT00940000154807.b	ENSGT00940000154896	ENSGT00940000158906	ENSGT00390000018531 #8	ENSGT00530000063461.A	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00950000182942.a.a	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A
Neopterygii	ANCESTRAL SPECIES	23	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a #11	ENSGT00940000158596 #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00390000014501 #23	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811 #27	ENSGT00940000156424 #29	ENSGT00390000015121 #30	ENSGT00940000155533.d	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00950000182942.a.a	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A
Osteoglossocephalai	ANCESTRAL SPECIES	44	ENSGT00940000155112.B.a	ENSGT00950000183108.a.c	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000166335	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #29	ENSGT00390000015121 #30
Osteoglossiformes	ANCESTRAL SPECIES	165	ENSGT00940000156272	ENSGT00940000158932	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000161612 #24	ENSGT00940000153665.a #25	ENSGT00950000182886.b.b #26	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #29	ENSGT00390000015121 #30	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT00940000155909.o.a.h
Asian bonytongue	MODERN SPECIES	9	MTSS1 (ENSSFOG00015004132)	ndufb9 (ENSSFOG00015027706)	TMEM65 (ENSSFOG00015033091)	mboat1 (ENSSFOG00015025225)	ENSSFOG00015004019	CDKAL1 (ENSSFOG00015004003)	ENSSFOG00015003934	nrsn1 (ENSSFOG00015024787)	ENSSFOG00015003896	slc6a3 (ENSSFOG00015003829) #9	LPCAT1 (ENSSFOG00015003762) #11	irx4a (ENSSFOG00015003670) #15	irx2a (ENSSFOG00015003644) #16	irx1a (ENSSFOG00015003629) #19	ADAMTS16 (ENSSFOG00015003545) #21	ENSSFOG00015003528 #22	ENSSFOG00015033114 #24	TENT4A (ENSSFOG00015028711) #27	ADCY2 (ENSSFOG00015003228) #29	DNAH5 (ENSSFOG00015002965)	trioa (ENSSFOG00015002766)	ENSSFOG00015002733	CCR8 (ENSSFOG00015002711)	glb1 (ENSSFOG00015002680)	CCR8 (ENSSFOG00015002617)	CCR8 (ENSSFOG00015002606)	ENSSFOG00015002604	cobl (ENSSFOG00015002577)	GRB10 (ENSSFOG00015002512)	ddc (ENSSFOG00015002454)	entpd3 (ENSSFOG00015002030)
P. kingsleyae	MODERN SPECIES	1	ndufb9 (ENSPKIG00000019952)	rnf139 (ENSPKIG00000019977)	TMEM65 (ENSPKIG00000020023)	mboat1 (ENSPKIG00000020096)	ENSPKIG00000020122	CDKAL1 (ENSPKIG00000020135)	sox4b (ENSPKIG00000020154)	nrsn1 (ENSPKIG00000020163)	DCDC2 (ENSPKIG00000020174)	slc6a3 (ENSPKIG00000020190) #9	LPCAT1 (ENSPKIG00000020226) #11	irx4a (ENSPKIG00000020245) #15	irx2a (ENSPKIG00000020276) #16	irx1a (ENSPKIG00000020325) #19	ADAMTS16 (ENSPKIG00000020385) #21	ice1 (ENSPKIG00000020458) #22	UBE2QL1 (ENSPKIG00000020483) #24	TENT4A (ENSPKIG00000020499) #27	ADCY2 (ENSPKIG00000020549) #29	DNAH5 (ENSPKIG00000020741)	trioa (ENSPKIG00000021187)	ENSPKIG00000021251	ENSPKIG00000021262	c1qtnf9 (ENSPKIG00000021279)	ENSPKIG00000021286	zgc:136493 (ENSPKIG00000021305)	rbfa (ENSPKIG00000021329)	ZFAT (ENSPKIG00000021355)	dync1i1 (ENSPKIG00000021394)	pon1 (ENSPKIG00000021420)	ENSPKIG00000021446
Clupeocephala	ANCESTRAL SPECIES	24	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000177739	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000157811.b.b #27	ENSGT00940000156424.b #29	ENSGT00390000015121 #30	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004
Otomorpha	ANCESTRAL SPECIES	153																ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Otophysi	ANCESTRAL SPECIES	58	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Characiphysae	ANCESTRAL SPECIES	49	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a
Channel catfish	MODERN SPECIES		ENSIPUG00000000617	ENSIPUG00000000620	ENSIPUG00000000623	CCR8 (ENSIPUG00000000625)	ENSIPUG00000000629	ENSIPUG00000000635	ENSIPUG00000000643	ENSIPUG00000000668	DNAH5 (ENSIPUG00000000709)	Adcy2 (ENSIPUG00000000788) #29	TENT4A (ENSIPUG00000000878) #27	PRPF3 (ENSIPUG00000000902)	ENSIPUG00000001009	ENSIPUG00000000997	ENSIPUG00000001016	ice1 (ENSIPUG00000001024) #22	ca14 (ENSIPUG00000001038)	taf2 (ENSIPUG00000001047)	ENPP2 (ENSIPUG00000001082)	ENSIPUG00000001113	Pdcd6 (ENSIPUG00000001129)	si:ch211-196f5.2 (ENSIPUG00000001166)	ipo4 (ENSIPUG00000001185)	nanog (ENSIPUG00000001246)	tm9sf1 (ENSIPUG00000001255)	fen1 (ENSIPUG00000001277)	esco1 (ENSIPUG00000001346)	ENSIPUG00000001361	tmem241 (ENSIPUG00000001378)	Riok3 (ENSIPUG00000001406)	ENSIPUG00000001477
Characiphysae_b	ANCESTRAL SPECIES	99	ENSGT00940000155115.a.a.a.b	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000164936.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a	ENSGT00940000159641
Characoidei	ANCESTRAL SPECIES	60	ENSGT01030000234564.a.a.a.a.a	ENSGT00390000017802.d	ENSGT00950000183156.a.b.b.b.b.a.d	ENSGT00950000183108.a.c.c	ENSGT00940000155112.B.a	ENSGT00940000162635.ob	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000159963	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000156893	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.u	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT00940000164178.db.a	ENSGT00390000012596.f	ENSGT00440000033742.a.a	ENSGT00940000153801.a	ENSGT00940000159641
Red-bellied piranha	MODERN SPECIES	70	mboat1 (ENSPNAG00000001569)	TMEM65 (ENSPNAG00000011182)	MTSS1 (ENSPNAG00000011302)	scgn (ENSPNAG00000001675)	CARMIL1 (ENSPNAG00000011382)	ENSPNAG00000001714	TNFRSF11B (ENSPNAG00000011418)	si:ch211-93i7.4 (ENSPNAG00000011397)	mal2 (ENSPNAG00000011425)	CCN3 (ENSPNAG00000011433)	enpp2 (ENSPNAG00000001739)	taf2 (ENSPNAG00000001742)	ca14 (ENSPNAG00000001753)	ENSPNAG00000001758	prpf3 (ENSPNAG00000001799)	ice1 (ENSPNAG00000001809) #22	TENT4A (ENSPNAG00000011603) #27	ADCY2 (ENSPNAG00000001857) #29	DNAH5 (ENSPNAG00000001933)	ENSPNAG00000012018	ENSPNAG00000002082	CCR8 (ENSPNAG00000012062)	CCR8 (ENSPNAG00000002086)	ENSPNAG00000012073	cobl (ENSPNAG00000012144)	GRB10 (ENSPNAG00000002153)	ddc (ENSPNAG00000012267)	ENSPNAG00000012300	AGL (ENSPNAG00000012454)	ENSPNAG00000002266	rab11fip3 (ENSPNAG00000012528)
Mexicana tetra	MODERN SPECIES	2	ENSAMXG00000007229	ENSAMXG00000025195	ENSAMXG00000035390	scgn (ENSAMXG00000037361)	CARMIL1 (ENSAMXG00000007246)	ENSAMXG00000040250	TNFRSF11B (ENSAMXG00000035635)	si:ch211-93i7.4 (ENSAMXG00000033176)	mal2 (ENSAMXG00000040616)	CCN3 (ENSAMXG00000035188)	enpp2 (ENSAMXG00000007268)	taf2 (ENSAMXG00000007296)	ca14 (ENSAMXG00000036060)	ENSAMXG00000038153	prpf3 (ENSAMXG00000007306)	ice1 (ENSAMXG00000042159) #22	TENT4A (ENSAMXG00000039964) #27	ADCY2 (ENSAMXG00000038314) #29	ENSAMXG00000038886	DNAH5 (ENSAMXG00000007429)	ENSAMXG00000007530	ENSAMXG00000040867	ENSAMXG00000041813	ENSAMXG00000043119	CCR8 (ENSAMXG00000029794)	CX3CR1 (ENSAMXG00000032773)	cobl (ENSAMXG00000019415)	ENSAMXG00000036059	GRB10 (ENSAMXG00000019421)	ddc (ENSAMXG00000019455)	ENSAMXG00000019467
Electric eel	MODERN SPECIES	174	cog7 (ENSEEEG00000011451)	kcnc3b (ENSEEEG00000011456)	ENSEEEG00000011457	SBK1 (ENSEEEG00000011458)	ENSEEEG00000011459	ENSEEEG00000011461	NLRC3 (ENSEEEG00000011464)	cluap1 (ENSEEEG00000011471)	ENSEEEG00000011474	enpp2 (ENSEEEG00000011475)	ENSEEEG00000011477	taf2 (ENSEEEG00000011482)	ca14 (ENSEEEG00000011858)	ENSEEEG00000011859	prpf3 (ENSEEEG00000011861)	ENSEEEG00000011864 #22	TENT4A (ENSEEEG00000011867) #27	ADCY2 (ENSEEEG00000011871) #29	DNAH5 (ENSEEEG00000011873)	ENSEEEG00000011893
Cyprinoidei	ANCESTRAL SPECIES	86		ENSGT00940000155167.b.a.a	ENSGT00940000155167.b.b	ENSGT00940000159374	ENSGT00940000159514	ENSGT00940000155778.B	ENSGT00390000000420	ENSGT00940000157006.m	ENSGT01030000234542.b.b.a.a.a.a	ENSGT00390000002049.d	ENSGT00940000156893	ENSGT00390000018878	ENSGT00940000157873.c	ENSGT00390000018360.a	ENSGT00390000011497	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a	ENSGT00940000157537
Cyprininae	ANCESTRAL SPECIES	292											ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb	ENSGT00940000164936.a	ENSGT00390000018360.a	ENSGT00390000011497.b	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a.a.a #29	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c	ENSGT00940000157537.t
Goldfish	MODERN SPECIES	7	dcst2 (ENSCARG00000065614)	ENSCARG00000065604	ADAM15 (ENSCARG00000065535)	abcb4 (ENSCARG00000055458)	crot (ENSCARG00000054864)	acbd7 (ENSCARG00000054833)	rpp38 (ENSCARG00000054825)	nmt2 (ENSCARG00000054408)	FAM171A1 (ENSCARG00000054300)	ITGA8 (ENSCARG00000053400)	mindy3 (ENSCARG00000053338)	sox4b (ENSCARG00000053331)	ENSCARG00000053322	ENSCARG00000053315	ENSCARG00000053305	ice1 (ENSCARG00000053282) #22	ndufb9 (ENSCARG00000053250)	ENSCARG00000053243	ENSCARG00000053238	ENSCARG00000053235	ENSCARG00000053221	ENSCARG00000053217	CDKAL1 (ENSCARG00000052622)	sox4b (ENSCARG00000052578)	ENSCARG00000052559	nrsn1 (ENSCARG00000052546)	DCDC2 (ENSCARG00000052541)	slc6a3 (ENSCARG00000051383) #9	LPCAT1 (ENSCARG00000051265) #11	ENSCARG00000051253	irx4a (ENSCARG00000051226) #15
Cyprininae_a	ANCESTRAL SPECIES	184											ENSGT00390000000420	ENSGT01020000230359.B.a.i.b	ENSGT00940000156893.mb	ENSGT00390000018360.a	ENSGT00390000011497.b	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a.a.a #29	ENSGT00940000155533.d.`b	ENSGT00940000154766.b.a	ENSGT01020000230359.B.a.i.a.a	ENSGT01020000230359.B.b.m	ENSGT01020000230359.A.y.a	ENSGT00530000063608.A	ENSGT00940000155909.o.a.e	ENSGT00940000156004.k	ENSGT01100000263542.A.a	ENSGT00420000029769.a.k	ENSGT00940000160695.a	ENSGT00940000155365.a.a.c	ENSGT00940000157537.t
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	1063										taf2 (ENSSGRG00000016236)	ENSSGRG00000016227	ENSSGRG00000016226	ca14 (ENSSGRG00000016225)	ENSSGRG00000016222	prpf3 (ENSSGRG00000016192)	ice1 (ENSSGRG00000016190) #22	trmt44 (ENSSGRG00000016187)	rpl34 (ENSSGRG00000016185)
Golden-line barbel	MODERN SPECIES	1801															prpf3 (ENSSGRG00000016966)	ice1 (ENSSGRG00000016965) #22	TENT4A (ENSSGRG00000016963) #27
Common carp reference	MODERN SPECIES	47	DCDC2 (ENSCCRG00000074477)	nrsn1 (ENSCCRG00000063262)	ENSCCRG00000009226	ENSCCRG00000055302	sox4b (ENSCCRG00000064749)	CDKAL1 (ENSCCRG00000078434)	ENSCCRG00000070793	ENSCCRG00000032799	ENSCCRG00000059401	ENSCCRG00000021581	ENSCCRG00000065962	ENSCCRG00000000786	ca14 (ENSCCRG00000073224)	prpf3 (ENSCCRG00000028229)	ENSCCRG00000054903	ENSCCRG00000004176 #22	ENSCCRG00000060732	ENSCCRG00000027486 #29	ENSCCRG00000058089	ENSCCRG00000037038	ENSCCRG00000018516	ENSCCRG00000028569	cobl (ENSCCRG00000022649)	ENSCCRG00000077123	ddc (ENSCCRG00000022014)	entpd3 (ENSCCRG00000018339)	GASK1A (ENSCCRG00000082810)	pomgnt2 (ENSCCRG00000078667)	ano10a (ENSCCRG00000069517)	ABHD5 (ENSCCRG00000051222)	snrka (ENSCCRG00000073103)
Zebrafish	MODERN SPECIES	7	ano10a (ENSDARG00000057736)	snrka (ENSDARG00000070832)	pomgnt2 (ENSDARG00000010941)	GASK1A (ENSDARG00000076862)	entpd3 (ENSDARG00000035309)	ddc (ENSDARG00000016494)	GRB10 (ENSDARG00000035308)	cobl (ENSDARG00000091006)	ENSDARG00000079829	ENSDARG00000105363	ENSDARG00000105467	CCR8 (ENSDARG00000086616)	ENSDARG00000000370	DNAH5 (ENSDARG00000087373)	ADCY2 (ENSDARG00000058392) #29	ice1 (ENSDARG00000058461) #22	ENSDARG00000095789	prpf3 (ENSDARG00000086425)	ENSDARG00000078162	ca14 (ENSDARG00000061697)	taf2 (ENSDARG00000102307)	enpp2 (ENSDARG00000011257)	mal2 (ENSDARG00000077637)	COLEC10 (ENSDARG00000104752)	ENSDARG00000105239	pip5k1ab (ENSDARG00000024642)	psmd4b (ENSDARG00000023279)	vamp1b (ENSDARG00000097576)	ENSDARG00000058351	grhl2a (ENSDARG00000058342)	ncalda (ENSDARG00000070688)
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000183199.b #22
Denticle herring	MODERN SPECIES	15	smc5 (ENSDCDG00000027386)	tjp2a (ENSDCDG00000027413)	pip5k1ba (ENSDCDG00000027588)	NIPBL (ENSDCDG00000027806)	skp2 (ENSDCDG00000028247)	nadk2 (ENSDCDG00000028249)	idh3b (ENSDCDG00000028276)	slc1a3b (ENSDCDG00000028721)	DMD (ENSDCDG00000028820)	gnrh2 (ENSDCDG00000029490)	ptpra (ENSDCDG00000029648)	pcnp (ENSDCDG00000032649)	mxa (ENSDCDG00000032679)	efnb2b (ENSDCDG00000033116)	arglu1b (ENSDCDG00000033120)	ENSDCDG00000033123 #22	ENSDCDG00000033125 #19	irx2a (ENSDCDG00000033126) #16	irx4a (ENSDCDG00000033130) #15	LPCAT1 (ENSDCDG00000033145) #11	slc6a3 (ENSDCDG00000000384) #9	DCDC2 (ENSDCDG00000000532)	nrsn1 (ENSDCDG00000000539)	sox4b (ENSDCDG00000000547)	CDKAL1 (ENSDCDG00000000592)	ENSDCDG00000000676	ENSDCDG00000000680	mboat1 (ENSDCDG00000000702)	TMEM14C (ENSDCDG00000000765)	DNAH5 (ENSDCDG00000000794)	hacl1 (ENSDCDG00000000855)
Atlantic herring	MODERN SPECIES	2	atg12 (ENSCHAG00000017434)	ENSCHAG00000017426	rcvrn2 (ENSCHAG00000017412)	rxrbb (ENSCHAG00000017392)	FHOD3 (ENSCHAG00000017110)	slc6a19b (ENSCHAG00000016766)	ENSCHAG00000016702	ENSCHAG00000016505	CFAP418 (ENSCHAG00000016493)	ENSCHAG00000016475	pimr50 (ENSCHAG00000016456)	plekhf2 (ENSCHAG00000016451)	NDUFAF6 (ENSCHAG00000016235)	nagpa (ENSCHAG00000016220)	pycr3 (ENSCHAG00000016190)	ENSCHAG00000016139 #22	ADCY2 (ENSCHAG00000015587) #29	DNAH5 (ENSCHAG00000013376)	ENSCHAG00000011435	ENSCHAG00000011361	CCR8 (ENSCHAG00000011352)	ENSCHAG00000011344	ENSCHAG00000011328	ENSCHAG00000011308	ENSCHAG00000011277	cobl (ENSCHAG00000011205)	ADAMTS16 (ENSCHAG00000011060) #21	irx1a (ENSCHAG00000011027) #19	irx2a (ENSCHAG00000011016) #16	irx4a (ENSCHAG00000011003) #15	LPCAT1 (ENSCHAG00000010974) #11
Euteleosteomorpha	ANCESTRAL SPECIES	77	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00420000029769.a	ENSGT00940000160695	ENSGT00940000155365.a.a
Acanthomorphata	ANCESTRAL SPECIES	124	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00390000015121 #30	ENSGT00940000154766.a.a	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b
Euacanthomorphacea	ANCESTRAL SPECIES	71	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae	ANCESTRAL SPECIES		ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT01030000234574.A.a.f #11	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000177739	ENSGT00940000179084	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Tetraodon	MODERN SPECIES	23	ENSTNIG00000009625	MTSS1 (ENSTNIG00000009624)	TMEM65 (ENSTNIG00000009623)	mboat1 (ENSTNIG00000009622)	E2F3 (ENSTNIG00000009621)	CDKAL1 (ENSTNIG00000009620)	sox4b (ENSTNIG00000009619)	nrsn1 (ENSTNIG00000007216)	DCDC2 (ENSTNIG00000007217)	slc6a3 (ENSTNIG00000007218) #9	LPCAT1 (ENSTNIG00000007219) #11	ENSTNIG00000001193	irx4a (ENSTNIG00000007220) #15	irx2a (ENSTNIG00000007221) #16	ADAMTS16 (ENSTNIG00000003742) #21	ENSTNIG00000000537 #22	ENSTNIG00000003741 #27	ADCY2 (ENSTNIG00000004420) #29	ENSTNIG00000004421	ENSTNIG00000019063	ENSTNIG00000019124	CCR8 (ENSTNIG00000019123)	ENSTNIG00000019122	ENSTNIG00000001750	cobl (ENSTNIG00000019121)	ENSTNIG00000019120	entpd3 (ENSTNIG00000019119)	rbms3 (ENSTNIG00000013819)	azi2 (ENSTNIG00000019118)	cmc1 (ENSTNIG00000019117)	eomesb (ENSTNIG00000019116)
Fugu	MODERN SPECIES	19	MTSS1 (ENSTRUG00000009080)	TMEM65 (ENSTRUG00000022028)	mboat1 (ENSTRUG00000008619)	E2F3 (ENSTRUG00000025067)	CDKAL1 (ENSTRUG00000008317)	sox4b (ENSTRUG00000008283)	nrsn1 (ENSTRUG00000008167)	DCDC2 (ENSTRUG00000020536)	LPCAT1 (ENSTRUG00000007993) #11	irx4a (ENSTRUG00000007775) #15	irx2a (ENSTRUG00000007607) #16	irx1a (ENSTRUG00000007467) #19	ENSTRUG00000030730	ADAMTS16 (ENSTRUG00000006843) #21	ENSTRUG00000032277	ENSTRUG00000006735 #22	TENT4A (ENSTRUG00000006698) #27	ADCY2 (ENSTRUG00000004979) #29	DNAH5 (ENSTRUG00000003584)	CCR8 (ENSTRUG00000010083)	ENSTRUG00000010075	ENSTRUG00000032932	cobl (ENSTRUG00000009979)	ENSTRUG00000009828	ddc (ENSTRUG00000009415)	entpd3 (ENSTRUG00000009318)	rbms3 (ENSTRUG00000021719)	azi2 (ENSTRUG00000026808)	cmc1 (ENSTRUG00000009107)	eomesb (ENSTRUG00000008966)	ANKIB1 (ENSTRUG00000008837)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Ballan wrasse	MODERN SPECIES	69	mal2 (ENSLBEG00000022749)	MTSS1 (ENSLBEG00000022637)	TMEM65 (ENSLBEG00000022553)	mboat1 (ENSLBEG00000022521)	ENSLBEG00000022497	CDKAL1 (ENSLBEG00000022455)	sox4b (ENSLBEG00000022430)	ENSLBEG00000022163	nrsn1 (ENSLBEG00000022002)	slc6a3 (ENSLBEG00000021954) #9	LPCAT1 (ENSLBEG00000021887) #11	irx4a (ENSLBEG00000021844) #15	irx2a (ENSLBEG00000021820) #16	irx1a (ENSLBEG00000021794) #19	ADAMTS16 (ENSLBEG00000021681) #21	ENSLBEG00000021621 #22	TENT4A (ENSLBEG00000021596) #27	ADCY2 (ENSLBEG00000021518) #29	DNAH5 (ENSLBEG00000021135)	ENSLBEG00000021026
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.l.b	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A.f	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.l.b	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A.f	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
European seabass	MODERN SPECIES	6	E2F3 (ENSDLAG00005028801)	CDKAL1 (ENSDLAG00005013192)	sox4b (ENSDLAG00005028717)	ENSDLAG00005013418	ENSDLAG00005013434	nrsn1 (ENSDLAG00005032271)	DCDC2 (ENSDLAG00005026563)	slc6a3 (ENSDLAG00005013489) #9	ENSDLAG00005014159 #11	irx4a (ENSDLAG00005014202) #15	irx2a (ENSDLAG00005027283) #16	irx1a (ENSDLAG00005014217) #19	ENSDLAG00005034153	ENSDLAG00005029488	ADAMTS16 (ENSDLAG00005014230) #21	ENSDLAG00005014513 #22	ENSDLAG00005014528 #27	ENSDLAG00005014639 #29	ENSDLAG00005015456	ENSDLAG00005016176	ENSDLAG00005019868	ENSDLAG00005031638	ENSDLAG00005033027	ENSDLAG00005024611	cobl (ENSDLAG00005019888)	ENSDLAG00005019972	ddc (ENSDLAG00005020771)	entpd3 (ENSDLAG00005020794)	RBMS3 (ENSDLAG00005020807)	azi2 (ENSDLAG00005020872)	ENSDLAG00005030140
Large yellow croaker	MODERN SPECIES	484	mal2 (ENSLCRG00005017206)	MTSS1 (ENSLCRG00005017258)	TMEM65 (ENSLCRG00005017317)	mboat1 (ENSLCRG00005017319)	e2f3 (ENSLCRG00005017336)	CDKAL1 (ENSLCRG00005017341)	sox4b (ENSLCRG00005017359)	nrsn1 (ENSLCRG00005017362)	DCDC2 (ENSLCRG00005017367)	slc6a3 (ENSLCRG00005017387) #9	LPCAT1 (ENSLCRG00005017854) #11	irx4a (ENSLCRG00005017874) #15	irx2a (ENSLCRG00005017881) #16	irx1a (ENSLCRG00005017890) #19	ADAMTS16 (ENSLCRG00005017931) #21	ENSLCRG00005018119 #22	TENT4A (ENSLCRG00005018122) #27	ADCY2 (ENSLCRG00005018148) #29	DNAH5 (ENSLCRG00005018334)	ENSLCRG00005018467	CCR8 (ENSLCRG00005018580)	CCR8 (ENSLCRG00005018582)	ENSLCRG00005018584	cobl (ENSLCRG00005018600)	ENSLCRG00005018618	ddc (ENSLCRG00005018653)	entpd3 (ENSLCRG00005018721)	rbms3 (ENSLCRG00005018759)	azi2 (ENSLCRG00005019121)	cmc1 (ENSLCRG00005019130)	eomesb (ENSLCRG00005019138)
Gilthead seabream	MODERN SPECIES	8	E2F3 (ENSSAUG00010022002)	ENSSAUG00010022001	CDKAL1 (ENSSAUG00010022000)	sox4b (ENSSAUG00010021998)	ENSSAUG00010021996	ENSSAUG00010021993	nrsn1 (ENSSAUG00010021988)	DCDC2 (ENSSAUG00010021987)	ENSSAUG00010021985	slc6a3 (ENSSAUG00010021894) #9	LPCAT1 (ENSSAUG00010021683) #11	irx4a (ENSSAUG00010021674) #15	irx2a (ENSSAUG00010021671) #16	irx1a (ENSSAUG00010021667) #19	ADAMTS16 (ENSSAUG00010021654) #21	ENSSAUG00010021644 #22	TENT4A (ENSSAUG00010021639) #27	ADCY2 (ENSSAUG00010021610) #29	DNAH5 (ENSSAUG00010021567)	ENSSAUG00010021300	CCR8 (ENSSAUG00010021298)	CCR8 (ENSSAUG00010021297)	ENSSAUG00010021295	cobl (ENSSAUG00010021291)	GRB10 (ENSSAUG00010020325)	ENSSAUG00010020297	ddc (ENSSAUG00010020250)	ENSSAUG00010020249	entpd3 (ENSSAUG00010020245)	rbms3 (ENSSAUG00010020213)	azi2 (ENSSAUG00010020210)
Perciformes	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Lumpfish	MODERN SPECIES	7	TMEM65 (ENSCLMG00005006240)	mboat1 (ENSCLMG00005006235)	ENSCLMG00005006230	ENSCLMG00005006229	CDKAL1 (ENSCLMG00005004820)	sox4b (ENSCLMG00005004791)	nrsn1 (ENSCLMG00005004787)	DCDC2 (ENSCLMG00005004675)	ENSCLMG00005004650	slc6a3 (ENSCLMG00005004616) #9	ENSCLMG00005004593 #11	irx4a (ENSCLMG00005004426) #15	irx2a (ENSCLMG00005004346) #16	irx1a (ENSCLMG00005010621) #19	ADAMTS16 (ENSCLMG00005010617) #21	ENSCLMG00005010611 #22	TENT4A (ENSCLMG00005010606) #27	ADCY2 (ENSCLMG00005010602) #29	DNAH5 (ENSCLMG00005010582)	ENSCLMG00005009872	CCR8 (ENSCLMG00005009860)	cobl (ENSCLMG00005009857)	GRB10 (ENSCLMG00005009342)	ddc (ENSCLMG00005009335)	ddc (ENSCLMG00005009331)	ddc (ENSCLMG00005009330)	ddc (ENSCLMG00005006173)	ENSCLMG00005006164	entpd3 (ENSCLMG00005006162)	rbms3 (ENSCLMG00005006160)	azi2 (ENSCLMG00005006159)
Stickleback	MODERN SPECIES	19	si:ch211-93i7.4 (ENSGACG00000006686)	ENSGACG00000006682	mal2 (ENSGACG00000006665)	MTSS1 (ENSGACG00000006650)	TMEM65 (ENSGACG00000006642)	E2F3 (ENSGACG00000006632)	CDKAL1 (ENSGACG00000006622)	sox4b (ENSGACG00000006620)	slc6a3 (ENSGACG00000006614) #9	LPCAT1 (ENSGACG00000006610) #11	irx4a (ENSGACG00000006607) #15	nrsn1 (ENSGACG00000006587)	irx2a (ENSGACG00000006581) #16	irx1a (ENSGACG00000006572) #19	ADAMTS16 (ENSGACG00000006552) #21	ENSGACG00000006535 #22	TENT4A (ENSGACG00000006531) #27	ADCY2 (ENSGACG00000006520) #29	DNAH5 (ENSGACG00000006485)	ENSGACG00000006462	CCR8 (ENSGACG00000006459)	CCR8 (ENSGACG00000006457)	ENSGACG00000006455	cobl (ENSGACG00000006446)	ENSGACG00000006438	ddc (ENSGACG00000006397)	entpd3 (ENSGACG00000006387)	rbms3 (ENSGACG00000006377)	azi2 (ENSGACG00000006371)	cmc1 (ENSGACG00000006355)	eomesb (ENSGACG00000006345)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Channel bull blenny	MODERN SPECIES	7	mal2 (ENSCGOG00000017357)	MTSS1 (ENSCGOG00000017359)	TMEM65 (ENSCGOG00000017715)	mboat1 (ENSCGOG00000017719)	E2F3 (ENSCGOG00000017795)	CDKAL1 (ENSCGOG00000017807)	sox4b (ENSCGOG00000018189)	ENSCGOG00000018191	nrsn1 (ENSCGOG00000018198)	slc6a3 (ENSCGOG00000018213) #9	LPCAT1 (ENSCGOG00000018622) #11	irx4a (ENSCGOG00000018626) #15	irx2a (ENSCGOG00000018629) #16	irx1a (ENSCGOG00000018630) #19	ADAMTS16 (ENSCGOG00000018633) #21	ENSCGOG00000018638 #22	ENSCGOG00000018639 #27	ADCY2 (ENSCGOG00000018652) #29	DNAH5 (ENSCGOG00000019126)	ENSCGOG00000019345	CCR8 (ENSCGOG00000019392)	ENSCGOG00000019394	ENSCGOG00000019397	ENSCGOG00000019400	ENSCGOG00000019403	ENSCGOG00000019411	ddc (ENSCGOG00000019524)	entpd3 (ENSCGOG00000019643)	rbms3 (ENSCGOG00000019662)	azi2 (ENSCGOG00000020909)	cmc1 (ENSCGOG00000020914)
Pike perch	MODERN SPECIES	15	ENSSLUG00000005414	ENSSLUG00000005411	ENSSLUG00000005398	ENSSLUG00000005310	ENSSLUG00000005276	nrsn1 (ENSSLUG00000005268)	DCDC2 (ENSSLUG00000005251)	slc6a3 (ENSSLUG00000005214) #9	ENSSLUG00000005204 #11	ENSSLUG00000005197	ENSSLUG00000005191	irx4a (ENSSLUG00000005163) #15	irx2a (ENSSLUG00000005099) #16	irx1a (ENSSLUG00000005071) #19	ADAMTS16 (ENSSLUG00000005044) #21	ENSSLUG00000005027 #22	TENT4A (ENSSLUG00000004991) #27	ADCY2 (ENSSLUG00000004890) #29	DNAH5 (ENSSLUG00000004788)	ENSSLUG00000001747	CCR8 (ENSSLUG00000001356)	CCR8 (ENSSLUG00000001353)
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Siamese fighting fish	MODERN SPECIES	7	MTSS1 (ENSBSLG00000016789)	ENSBSLG00000017334	mboat1 (ENSBSLG00000017351)	E2F3 (ENSBSLG00000017543)	CDKAL1 (ENSBSLG00000017574)	sox4b (ENSBSLG00000017876)	ENSBSLG00000017888	nrsn1 (ENSBSLG00000017902)	ENSBSLG00000017917	slc6a3 (ENSBSLG00000017958) #9	LPCAT1 (ENSBSLG00000018557) #11	irx4a (ENSBSLG00000018764) #15	irx2a (ENSBSLG00000018817) #16	irx1a (ENSBSLG00000018830) #19	ADAMTS16 (ENSBSLG00000018867) #21	ENSBSLG00000019271 #22	TENT4A (ENSBSLG00000019278) #27	ADCY2 (ENSBSLG00000019448) #29	DNAH5 (ENSBSLG00000019890)	ENSBSLG00000020981	ENSBSLG00000021015	ENSBSLG00000021062	ENSBSLG00000021087	cobl (ENSBSLG00000021140)	GRB10 (ENSBSLG00000021356)	ddc (ENSBSLG00000022416)	entpd3 (ENSBSLG00000022804)	rbms3 (ENSBSLG00000022849)	azi2 (ENSBSLG00000022908)	cmc1 (ENSBSLG00000022927)	eomesb (ENSBSLG00000022981)
Climbing perch	MODERN SPECIES	7	ENSATEG00000024074	MBOAT1 (ENSATEG00000024078)	E2F3 (ENSATEG00000024083)	CDKAL1 (ENSATEG00000024092)	sox4b (ENSATEG00000024103)	ENSATEG00000024120	ENSATEG00000024141	nrsn1 (ENSATEG00000024148)	DCDC2 (ENSATEG00000028429)	slc6a3 (ENSATEG00000024157) #9	ENSATEG00000024162 #11	irx4a (ENSATEG00000024168) #15	irx2a (ENSATEG00000024174) #16	irx1a (ENSATEG00000024177) #19	ADAMTS16 (ENSATEG00000024185) #21	ENSATEG00000024192 #22	ENSATEG00000024197 #27	ENSATEG00000024202 #29	ENSATEG00000024212	ENSATEG00000024239	ENSATEG00000025734	ENSATEG00000026108	ENSATEG00000024255	ENSATEG00000024258	ENSATEG00000024261	ENSATEG00000030154	cobl (ENSATEG00000024278)	ENSATEG00000024287	ddc (ENSATEG00000024290)	entpd3 (ENSATEG00000024293)	RBMS3 (ENSATEG00000024295)
Carangaria	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Seriola	ANCESTRAL SPECIES	16	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Greater amberjack	MODERN SPECIES	75	MTSS1 (ENSSDUG00000015414)	TMEM65 (ENSSDUG00000015376)	mboat1 (ENSSDUG00000015361)	E2F3 (ENSSDUG00000015325)	ENSSDUG00000015311	CDKAL1 (ENSSDUG00000015207)	sox4b (ENSSDUG00000015143)	ENSSDUG00000015132	nrsn1 (ENSSDUG00000015122)	slc6a3 (ENSSDUG00000015097) #9	LPCAT1 (ENSSDUG00000015038) #11	irx4a (ENSSDUG00000015004) #15	irx2a (ENSSDUG00000014985) #16	irx1a (ENSSDUG00000014947) #19	ADAMTS16 (ENSSDUG00000014889) #21	ENSSDUG00000014846 #22	ENSSDUG00000014825 #27	ADCY2 (ENSSDUG00000014787) #29	DNAH5 (ENSSDUG00000014206)	ENSSDUG00000013907	CCR8 (ENSSDUG00000013883)	CCR8 (ENSSDUG00000013878)	ENSSDUG00000013869	cobl (ENSSDUG00000013828)	ENSSDUG00000013788	ddc (ENSSDUG00000013766)	entpd3 (ENSSDUG00000013701)	rbms3 (ENSSDUG00000013656)	azi2 (ENSSDUG00000013637)	cmc1 (ENSSDUG00000013626)	eomesb (ENSSDUG00000013615)
Yellowtail amberjack	MODERN SPECIES	3198						CDKAL1 (ENSSLDG00000020382)	sox4b (ENSSLDG00000020371)	nrsn1 (ENSSLDG00000020352)	ENSSLDG00000020335	slc6a3 (ENSSLDG00000020009) #9	LPCAT1 (ENSSLDG00000019924) #11	irx4a (ENSSLDG00000019887) #15	irx2a (ENSSLDG00000019856) #16	irx1a (ENSSLDG00000019846) #19	ADAMTS16 (ENSSLDG00000019799) #21	ENSSLDG00000019767 #22	ENSSLDG00000019746 #27
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Turbot	MODERN SPECIES		MAL2 (ENSSMAG00000032230)	ENSSMAG00000003409	ENSSMAG00000003513	MBOAT1 (ENSSMAG00000003534)	E2F3 (ENSSMAG00000003546)	CDKAL1 (ENSSMAG00000003573)	sox4b (ENSSMAG00000003637)	nrsn1 (ENSSMAG00000003641)	DCDC2 (ENSSMAG00000003653)	slc6a3 (ENSSMAG00000003672) #9	ENSSMAG00000003739 #11	irx4a (ENSSMAG00000003773) #15	irx2a (ENSSMAG00000022904) #16	irx1a (ENSSMAG00000003852) #19	ADAMTS16 (ENSSMAG00000003857) #21	ENSSMAG00000003922 #22	ENSSMAG00000003989 #27	ENSSMAG00000004024 #29	ENSSMAG00000004127	ENSSMAG00000004603	ENSSMAG00000025062	ENSSMAG00000004706	ENSSMAG00000004713	cobl (ENSSMAG00000004725)	ENSSMAG00000004849	ddc (ENSSMAG00000022350)	entpd3 (ENSSMAG00000004976)	RBMS3 (ENSSMAG00000004997)	azi2 (ENSSMAG00000005187)	ENSSMAG00000022104	eomesb (ENSSMAG00000005213)
Tongue sole	MODERN SPECIES	4	ENSCSEG00000004117	ENSCSEG00000004057	ENSCSEG00000004047	mios (ENSCSEG00000004036)	ENSCSEG00000004029	ENSCSEG00000004026	sox4b (ENSCSEG00000004025)	nrsn1 (ENSCSEG00000004021)	DCDC2 (ENSCSEG00000004017)	slc6a3 (ENSCSEG00000004002) #9	LPCAT1 (ENSCSEG00000003975) #11	irx4a (ENSCSEG00000003963) #15	irx2a (ENSCSEG00000003955) #16	irx1a (ENSCSEG00000003947) #19	ADAMTS16 (ENSCSEG00000003913) #21	ENSCSEG00000003893 #22	ENSCSEG00000003887 #27	ADCY2 (ENSCSEG00000003855) #29	mal2 (ENSCSEG00000003844)	ENSCSEG00000003841	TNFRSF11B (ENSCSEG00000003835)	ENSCSEG00000003830	CARMIL1 (ENSCSEG00000003813)	scgn (ENSCSEG00000003802)	CCN3 (ENSCSEG00000003798)	ENSCSEG00000003793	ctnnb1 (ENSCSEG00000003769)	ENSCSEG00000003765	TRAK1 (ENSCSEG00000003758)	ccka (ENSCSEG00000003756)	ENSCSEG00000003744
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT01030000234574.A.a.f #11	ENSGT00940000177739	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT01030000234574.A.a.f #11	ENSGT00940000177739	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Pomacentridae	ANCESTRAL SPECIES	23	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT01030000234574.A.a.f #11	ENSGT00940000177739	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Amphiprion	ANCESTRAL SPECIES	54	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Clown anemonefish	MODERN SPECIES	1360															ADAMTS16 (ENSAOCG00000000852) #21	ENSAOCG00000013520 #22	TENT4A (ENSAOCG00000013501) #27	ADCY2 (ENSAOCG00000013485) #29	DNAH5 (ENSAOCG00000013443)	ENSAOCG00000013177	CCR8 (ENSAOCG00000013010)	ENSAOCG00000013002	ENSAOCG00000012993	cobl (ENSAOCG00000002209)	GRB10 (ENSAOCG00000012855)	ddc (ENSAOCG00000002147)
Orange clownfish	MODERN SPECIES	21	MTSS1 (ENSAPEG00000014560)	TMEM65 (ENSAPEG00000014616)	mboat1 (ENSAPEG00000014677)	E2F3 (ENSAPEG00000014727)	CDKAL1 (ENSAPEG00000014801)	sox4b (ENSAPEG00000014937)	ENSAPEG00000014975	nrsn1 (ENSAPEG00000015059)	DCDC2 (ENSAPEG00000015093)	slc6a3 (ENSAPEG00000015126) #9	LPCAT1 (ENSAPEG00000015191) #11	irx4a (ENSAPEG00000015290) #15	irx2a (ENSAPEG00000015314) #16	irx1a (ENSAPEG00000015338) #19	ADAMTS16 (ENSAPEG00000015350) #21	ENSAPEG00000015492 #22	TENT4A (ENSAPEG00000015522) #27	ENSAPEG00000015540 #29	DNAH5 (ENSAPEG00000015612)	ENSAPEG00000015798	CCR8 (ENSAPEG00000016031)	ENSAPEG00000016039	ENSAPEG00000016049	cobl (ENSAPEG00000016068)	GRB10 (ENSAPEG00000016152)	ddc (ENSAPEG00000016234)	entpd3 (ENSAPEG00000016291)	rbms3 (ENSAPEG00000016299)	azi2 (ENSAPEG00000016346)	cmc1 (ENSAPEG00000016367)	eomesb (ENSAPEG00000016400)
Spiny chromis	MODERN SPECIES	308																ENSAPOG00000018115 #22	TENT4A (ENSAPOG00000018106) #27	ADCY2 (ENSAPOG00000018092) #29	fads2 (ENSAPOG00000017946)	LRRC10B (ENSAPOG00000017866)	ENSAPOG00000017852	SYT7 (ENSAPOG00000017822)	ENSAPOG00000017771	ENSAPOG00000017704	PNPLA2 (ENSAPOG00000017699)	ENSAPOG00000017659	pgghg (ENSAPOG00000017622)	ENSAPOG00000017598	fth1b (ENSAPOG00000017534)	BEST1 (ENSAPOG00000017526)	RAB3IL1 (ENSAPOG00000017469)
Bicolor damselfish	MODERN SPECIES	1232															ADAMTS16 (ENSSPAG00000017452) #21	ENSSPAG00000017429 #22	TENT4A (ENSSPAG00000017401) #27	ADCY2 (ENSSPAG00000017329) #29
Cichlidae	ANCESTRAL SPECIES	26	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.a	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.b	ENSGT01020000230359.A.e.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a
Burton s mouthbrooder	MODERN SPECIES	465								nrsn1 (ENSHBUG00000005109)	ENSHBUG00000005117	slc6a3 (ENSHBUG00000005189) #9	LPCAT1 (ENSHBUG00000005255) #11	irx4a (ENSHBUG00000005281) #15	irx2a (ENSHBUG00000000945) #16	irx1a (ENSHBUG00000005321) #19	ADAMTS16 (ENSHBUG00000005402) #21	ENSHBUG00000005427 #22	ENSHBUG00000001038 #27	ADCY2 (ENSHBUG00000005498) #29	DNAH5 (ENSHBUG00000005677)	ENSHBUG00000005837	CCR8 (ENSHBUG00000005857)	ENSHBUG00000005868
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A.e.b	ENSGT01020000230359.A.e.a.b.a	ENSGT01020000230359.A.e.a.b.b.b	ENSGT01020000230359.A.e.a.a.a	ENSGT01020000230359.A.f.a	ENSGT01020000230359.A.f.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a
Haplochromini_B	ANCESTRAL SPECIES	50	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT01060000248575.D.c.b.a.b.a.e	ENSGT01060000248575.D.c.b.a.b.a.f.a.b	ENSGT01060000248575.D.c.b.a.b.a.f.a.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000178259.a
Zebra mbuna	MODERN SPECIES	1093	sox4b (ENSMZEG00005025621)	ENSMZEG00005025628	ENSMZEG00005025705	ENSMZEG00005000064	ENSMZEG00005000103	ENSMZEG00005000172	ENSMZEG00005001482	nrsn1 (ENSMZEG00005001555)	DCDC2 (ENSMZEG00005001579)	slc6a3 (ENSMZEG00005001594) #9	LPCAT1 (ENSMZEG00005001635) #11	irx4a (ENSMZEG00005001663) #15	irx2a (ENSMZEG00005001683) #16	irx1a (ENSMZEG00005001700) #19	ADAMTS16 (ENSMZEG00005001714) #21	ENSMZEG00005001791 #22	ENSMZEG00005001805 #27	ADCY2 (ENSMZEG00005001837) #29	ENSMZEG00005001884	ENSMZEG00005001894	ENSMZEG00005001909	ENSMZEG00005001925	ENSMZEG00005001934	trmt11 (ENSMZEG00005001961)	hint3 (ENSMZEG00005002001)	ENSMZEG00005002011	ENSMZEG00005002128	ENSMZEG00005002215	ENSMZEG00005002247	ENSMZEG00005002265	ctnnb1 (ENSMZEG00005002279)
Eastern happy	MODERN SPECIES	2	ENSACLG00000014932	ENSACLG00000015148	ENSACLG00000015940	ENSACLG00000016003	ENSACLG00000016234	ENSACLG00000016261	nrsn1 (ENSACLG00000016280)	DCDC2 (ENSACLG00000016296)	slc6a3 (ENSACLG00000016313) #9	LPCAT1 (ENSACLG00000016419) #11	irx4a (ENSACLG00000016472) #15	ENSACLG00000016515	irx2a (ENSACLG00000016529) #16	irx1a (ENSACLG00000016599) #19	ADAMTS16 (ENSACLG00000016662) #21	ENSACLG00000016786 #22	ENSACLG00000016812 #27	ADCY2 (ENSACLG00000016838) #29	DNAH5 (ENSACLG00000017018)	ENSACLG00000017507	ENSACLG00000017508	ENSACLG00000017522	ENSACLG00000017530	ENSACLG00000017546	ENSACLG00000017737	ENSACLG00000017953	ENSACLG00000017967	ENSACLG00000017980	ENSACLG00000017989	ENSACLG00000017997	ENSACLG00000018007
P. nyererei	MODERN SPECIES	441	mal2 (ENSPNYG00000008827)	MTSS1 (ENSPNYG00000008734)	TMEM65 (ENSPNYG00000008687)	mboat1 (ENSPNYG00000008612)	E2F3 (ENSPNYG00000008585)	CDKAL1 (ENSPNYG00000008533)	sox4b (ENSPNYG00000008483)	ENSPNYG00000008473	nrsn1 (ENSPNYG00000008454)	slc6a3 (ENSPNYG00000008419) #9	LPCAT1 (ENSPNYG00000008381) #11	irx4a (ENSPNYG00000008347) #15	irx2a (ENSPNYG00000008324) #16	irx1a (ENSPNYG00000008294) #19	ADAMTS16 (ENSPNYG00000008224) #21	ENSPNYG00000008193 #22	ENSPNYG00000008164 #27	ADCY2 (ENSPNYG00000008105) #29	ENSPNYG00000008086
Lyretail cichlid	MODERN SPECIES	411							sox4b (ENSNBRG00000009576)	nrsn1 (ENSNBRG00000009557)	DCDC2 (ENSNBRG00000009546)	slc6a3 (ENSNBRG00000009507) #9	LPCAT1 (ENSNBRG00000009465) #11	irx4a (ENSNBRG00000009447) #15	irx2a (ENSNBRG00000009422) #16	irx1a (ENSNBRG00000009359) #19	ADAMTS16 (ENSNBRG00000009277) #21	ENSNBRG00000009248 #22	ENSNBRG00000009218 #27	ADCY2 (ENSNBRG00000009156) #29	ENSNBRG00000009139	DNAH5 (ENSNBRG00000009027)	ENSNBRG00000008924	ENSNBRG00000008858	ENSNBRG00000008707	CCR8 (ENSNBRG00000008639)	ENSNBRG00000008619	ENSNBRG00000008590	ENSNBRG00000008574	ENSNBRG00000008550	CX3CR1 (ENSNBRG00000008528)	ENSNBRG00000008521	ENSNBRG00000008507
Nile tilapia	MODERN SPECIES	2	ENSONIG00000038591	E2F3 (ENSONIG00000007069)	CDKAL1 (ENSONIG00000007075)	ENSONIG00000034194	sox4b (ENSONIG00000020748)	ENSONIG00000027348	ENSONIG00000007077	nrsn1 (ENSONIG00000007078)	DCDC2 (ENSONIG00000031993)	slc6a3 (ENSONIG00000007082) #9	LPCAT1 (ENSONIG00000007105) #11	irx4a (ENSONIG00000036951) #15	irx2a (ENSONIG00000038017) #16	irx1a (ENSONIG00000007113) #19	ADAMTS16 (ENSONIG00000007117) #21	ENSONIG00000007128 #22	ENSONIG00000007130 #27	ADCY2 (ENSONIG00000007131) #29	ENSONIG00000037862	ENSONIG00000032288	DNAH5 (ENSONIG00000007143)	ENSONIG00000029926	ENSONIG00000007147	CCR8 (ENSONIG00000029685)	ENSONIG00000035731	ENSONIG00000027766	ENSONIG00000027997	ENSONIG00000043017	ENSONIG00000035016	ENSONIG00000007156	ENSONIG00000022826
Midas cichlid	MODERN SPECIES	442													irx2a (ENSACIG00000014050) #16	irx1a (ENSACIG00000014076) #19	ADAMTS16 (ENSACIG00000014143) #21	ENSACIG00000014216 #22	ENSACIG00000014234 #27
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT01020000230359.A	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l	ENSGT00940000157621
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT01020000230359.A.a	ENSGT01020000230359.A.b	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a.v	ENSGT01020000230359.B.a.u	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Javanese ricefish	MODERN SPECIES	7	mal2 (ENSOJAG00000017944)	MTSS1 (ENSOJAG00000017957)	TMEM65 (ENSOJAG00000018004)	mboat1 (ENSOJAG00000018014)	E2F3 (ENSOJAG00000018065)	CDKAL1 (ENSOJAG00000018116)	sox4b (ENSOJAG00000018493)	nrsn1 (ENSOJAG00000018497)	slc6a3 (ENSOJAG00000018621) #9	LPCAT1 (ENSOJAG00000019608) #11	irx4a (ENSOJAG00000019927) #15	irx2a (ENSOJAG00000019936) #16	irx1a (ENSOJAG00000019942) #19	lin7b (ENSOJAG00000019948)	ADAMTS16 (ENSOJAG00000020022) #21	ENSOJAG00000020320 #22	ENSOJAG00000020354 #27	ADCY2 (ENSOJAG00000020466) #29	ENSOJAG00000020758	ENSOJAG00000020767	CCR8 (ENSOJAG00000020774)	ENSOJAG00000020779	CCR8 (ENSOJAG00000020789)	trioa (ENSOJAG00000020834)	cobl (ENSOJAG00000021465)	GRB10 (ENSOJAG00000021551)	ddc (ENSOJAG00000022050)	entpd3 (ENSOJAG00000022084)	rbms3 (ENSOJAG00000022101)	azi2 (ENSOJAG00000022113)	cmc1 (ENSOJAG00000022115)
Indian medaka	MODERN SPECIES	5	MTSS1 (ENSOMEG00000013271)	TMEM65 (ENSOMEG00000013323)	mboat1 (ENSOMEG00000013368)	E2F3 (ENSOMEG00000013401)	CDKAL1 (ENSOMEG00000013480)	sox4b (ENSOMEG00000013539)	yipf2 (ENSOMEG00000013568)	nrsn1 (ENSOMEG00000013622)	ENSOMEG00000013653	slc6a3 (ENSOMEG00000013700) #9	LPCAT1 (ENSOMEG00000013762) #11	irx4a (ENSOMEG00000000923) #15	irx2a (ENSOMEG00000013826) #16	irx1a (ENSOMEG00000013869) #19	ADAMTS16 (ENSOMEG00000013974) #21	ENSOMEG00000014033 #22	ENSOMEG00000014052 #27	ADCY2 (ENSOMEG00000014190) #29	ENSOMEG00000014223	ENSOMEG00000014234	ENSOMEG00000014244	CCR8 (ENSOMEG00000014277)	ENSOMEG00000014299	ENSOMEG00000014385	cobl (ENSOMEG00000014589)	GRB10 (ENSOMEG00000014643)	ddc (ENSOMEG00000014693)	entpd3 (ENSOMEG00000014729)	rbms3 (ENSOMEG00000014805)	azi2 (ENSOMEG00000014829)	cmc1 (ENSOMEG00000014859)
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT01020000230359.A.d	ENSGT01020000230359.A.c	ENSGT01020000230359.B.b	ENSGT01020000230359.B.a.x	ENSGT01020000230359.B.a.w	ENSGT00940000154766.b	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Japanese Medaka HdrR	MODERN SPECIES	7	mboat1 (ENSORLG00000004964)	E2F3 (ENSORLG00000027588)	CDKAL1 (ENSORLG00000004979)	ENSORLG00000022696	sox4b (ENSORLG00000005001)	ENSORLG00000027453	nrsn1 (ENSORLG00000005016)	DCDC2 (ENSORLG00000005024)	slc6a3 (ENSORLG00000005085) #9	LPCAT1 (ENSORLG00000005120) #11	irx4a (ENSORLG00000005134) #15	irx2a (ENSORLG00000005150) #16	irx1a (ENSORLG00000005157) #19	ENSORLG00000023181	ADAMTS16 (ENSORLG00000005170) #21	ENSORLG00000005184 #22	ENSORLG00000027691 #27	ADCY2 (ENSORLG00000030004) #29	ENSORLG00000022103	ENSORLG00000005194	ENSORLG00000005197	ENSORLG00000005211	CCR8 (ENSORLG00000023783)	ENSORLG00000005279	cobl (ENSORLG00000005289)	ENSORLG00000024198	GRB10 (ENSORLG00000005315)	ddc (ENSORLG00000005340)	RBMS3 (ENSORLG00000005370)	azi2 (ENSORLG00000005382)	cmc1 (ENSORLG00000005385)
Chinese medaka	MODERN SPECIES	632															ADAMTS16 (ENSOSIG00000018400) #21	ENSOSIG00000018404 #22	ENSOSIG00000018405 #27	ADCY2 (ENSOSIG00000018449) #29
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Aplocheiloidei	ANCESTRAL SPECIES	26	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Mangrove rivulus	MODERN SPECIES	14	MTSS1 (ENSKMAG00000019293)	TMEM65 (ENSKMAG00000019384)	mboat1 (ENSKMAG00000019402)	ENSKMAG00000019420	CDKAL1 (ENSKMAG00000019441)	sox4b (ENSKMAG00000019466)	ENSKMAG00000019476	nrsn1 (ENSKMAG00000019486)	DCDC2 (ENSKMAG00000019506)	slc6a3 (ENSKMAG00000019572) #9	LPCAT1 (ENSKMAG00000019716) #11	irx4a (ENSKMAG00000019771) #15	irx2a (ENSKMAG00000019798) #16	irx1a (ENSKMAG00000019814) #19	ADAMTS16 (ENSKMAG00000019844) #21	ENSKMAG00000019901 #22	TENT4A (ENSKMAG00000019925) #27	ADCY2 (ENSKMAG00000019954) #29	DNAH5 (ENSKMAG00000020011)	ENSKMAG00000020157	ENSKMAG00000020257	CCR8 (ENSKMAG00000020291)	CCR8 (ENSKMAG00000020303)	ENSKMAG00000020309	ENSKMAG00000020324	GRB10 (ENSKMAG00000020363)	ddc (ENSKMAG00000020433)	entpd3 (ENSKMAG00000020472)	rbms3 (ENSKMAG00000020500)	azi2 (ENSKMAG00000020524)	cmc1 (ENSKMAG00000020538)
Turquoise killifish	MODERN SPECIES	1614	nrsn1 (ENSNFUG00015006820)	DCDC2 (ENSNFUG00015006817)	ENSNFUG00015006813	SLC6A3 (ENSNFUG00015006613) #9	CABZ01078889.1 (ENSNFUG00015006507) #11	ENSNFUG00015006495	irx4a (ENSNFUG00015006485) #15	ENSNFUG00015006482	ENSNFUG00015006478	ENSNFUG00015006474	irx2a (ENSNFUG00015006457) #16	ENSNFUG00015006449	IRX1A (ENSNFUG00015006443) #19	ENSNFUG00015006439	ADAMTS16 (ENSNFUG00015006275) #21	ENSNFUG00015006233 #22	PAPD7 (ENSNFUG00015006218) #27	ENSNFUG00015006212	ADCY2A (ENSNFUG00015005842) #29	ENSNFUG00015005785	DNAH5 (ENSNFUG00015005683)	ENSNFUG00015005565	CCR8 (ENSNFUG00015005539)	ENSNFUG00015005530	ENSNFUG00015005522	COBL (ENSNFUG00015005488)	GRB10 (ENSNFUG00015005208)	DDC (ENSNFUG00015005032)	ENTPD3 (ENSNFUG00015004988)	ENSNFUG00015004981	ENSNFUG00015004976
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Poecilia	ANCESTRAL SPECIES		ENSGT00940000159514	ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
NAME_6	ANCESTRAL SPECIES	117		ENSGT00950000183156.a.b.b.b.b.a.c.a	ENSGT00390000017802.d	ENSGT01030000234564.a.a.a.a.a	ENSGT00940000155115.a.a.a.b	ENSGT00940000155952	ENSGT00940000161470.a.a	ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT00940000166969.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989
Sailfin molly	MODERN SPECIES	763															ADAMTS16 (ENSPLAG00000004518) #21	ENSPLAG00000000079 #22	TENT4A (ENSPLAG00000004468) #27
Amazon molly	MODERN SPECIES	252	MTSS1 (ENSPFOG00000016007)	TMEM65 (ENSPFOG00000016069)	mboat1 (ENSPFOG00000016108)	E2F3 (ENSPFOG00000016235)	CDKAL1 (ENSPFOG00000016282)	sox4b (ENSPFOG00000016372)	nrsn1 (ENSPFOG00000016379)	DCDC2 (ENSPFOG00000023870)	slc6a3 (ENSPFOG00000016403) #9	LPCAT1 (ENSPFOG00000016509) #11	ENSPFOG00000016580	irx4a (ENSPFOG00000016581) #15	irx2a (ENSPFOG00000016596) #16	irx1a (ENSPFOG00000016622) #19	ADAMTS16 (ENSPFOG00000016644) #21	ENSPFOG00000016745 #22	TENT4A (ENSPFOG00000016762) #27	ADCY2 (ENSPFOG00000016794) #29	DNAH5 (ENSPFOG00000016948)	ENSPFOG00000017405	CCR8 (ENSPFOG00000020862)	CCR8 (ENSPFOG00000017755)	ENSPFOG00000017756	cobl (ENSPFOG00000017759)	GRB10 (ENSPFOG00000017779)	ddc (ENSPFOG00000017822)	entpd3 (ENSPFOG00000017854)	rbms3 (ENSPFOG00000017887)	azi2 (ENSPFOG00000017923)	cmc1 (ENSPFOG00000017932)	eomesb (ENSPFOG00000017938)
Guppy	MODERN SPECIES	446	TMEM65 (ENSPREG00000010739)	mboat1 (ENSPREG00000010764)	ENSPREG00000010821	ENSPREG00000010836	CDKAL1 (ENSPREG00000010873)	sox4b (ENSPREG00000010954)	nrsn1 (ENSPREG00000010983)	DCDC2 (ENSPREG00000011016)	slc6a3 (ENSPREG00000011037) #9	LPCAT1 (ENSPREG00000011063) #11	irx4a (ENSPREG00000011089) #15	irx2a (ENSPREG00000011115) #16	irx1a (ENSPREG00000011131) #19	ENSPREG00000011164	ADAMTS16 (ENSPREG00000011180) #21	ENSPREG00000011224 #22	ENSPREG00000011244	TENT4A (ENSPREG00000011257) #27	ADCY2 (ENSPREG00000011307) #29	DNAH5 (ENSPREG00000011353)	ENSPREG00000011453	CCR8 (ENSPREG00000011557)	ENSPREG00000011565	ENSPREG00000011591	cobl (ENSPREG00000011603)	GRB10 (ENSPREG00000011626)	ddc (ENSPREG00000011646)	entpd3 (ENSPREG00000011705)	rbms3 (ENSPREG00000011880)	ENSPREG00000011985	azi2 (ENSPREG00000012001)
Platyfish	MODERN SPECIES	17	mal2 (ENSXMAG00000009738)	MTSS1 (ENSXMAG00000009708)	TMEM65 (ENSXMAG00000009701)	mboat1 (ENSXMAG00000009682)	E2F3 (ENSXMAG00000021029)	CDKAL1 (ENSXMAG00000009663)	ENSXMAG00000023721	ENSXMAG00000009656	nrsn1 (ENSXMAG00000005256)	ENSXMAG00000005263	slc6a3 (ENSXMAG00000022758) #9	irx4a (ENSXMAG00000005284) #15	irx2a (ENSXMAG00000021240) #16	irx1a (ENSXMAG00000022002) #19	ADAMTS16 (ENSXMAG00000013842) #21	ENSXMAG00000013833 #22	TENT4A (ENSXMAG00000026228) #27	ADCY2 (ENSXMAG00000000886) #29	DNAH5 (ENSXMAG00000000884)	ENSXMAG00000000815	CCR8 (ENSXMAG00000000814)	ENSXMAG00000025402	ENSXMAG00000020910	cobl (ENSXMAG00000025699)	GRB10 (ENSXMAG00000000791)	ddc (ENSXMAG00000000755)	entpd3 (ENSXMAG00000000746)	rbms3 (ENSXMAG00000021783)	azi2 (ENSXMAG00000014311)	cmc1 (ENSXMAG00000014309)	eomesb (ENSXMAG00000014284)
NAME_4	ANCESTRAL SPECIES	179								ENSGT00530000063877.b.a	ENSGT00940000159377	ENSGT00940000161224 #9	ENSGT01030000234574.A.a.e.a #11	ENSGT00940000158596.a.a #15	ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22	ENSGT00940000157811.b.a #27	ENSGT00940000156424.a #29	ENSGT00940000155533.d	ENSGT00940000154766.b	ENSGT01020000230359.B.a	ENSGT01020000230359.B.b	ENSGT01020000230359.A	ENSGT00530000063608.A	ENSGT00940000155909.o.a	ENSGT00940000156004	ENSGT01100000263542.A	ENSGT00940000157131.b	ENSGT00940000153704.A.q	ENSGT00940000166989	ENSGT00940000158728.l
Mummichog	MODERN SPECIES	2213													irx2a (ENSFHEG00000006215) #16	irx1a (ENSFHEG00000006196) #19	ADAMTS16 (ENSFHEG00000000773) #21	ENSFHEG00000006100 #22	TENT4A (ENSFHEG00000006086) #27	ADCY2 (ENSFHEG00000006074) #29	DNAH5 (ENSFHEG00000005963)	ENSFHEG00000005122	CCR8 (ENSFHEG00000004989)	CCR8 (ENSFHEG00000004985)	ENSFHEG00000004960	cobl (ENSFHEG00000004950)	GRB10 (ENSFHEG00000004890)	ddc (ENSFHEG00000004850)	entpd3 (ENSFHEG00000004810)	rbms3 (ENSFHEG00000004787)	azi2 (ENSFHEG00000004614)	cmc1 (ENSFHEG00000004600)	eomesb (ENSFHEG00000004590)
Sheepshead minnow	MODERN SPECIES	211													irx2a (ENSCVAG00000008630) #16	irx1a (ENSCVAG00000008606) #19	ADAMTS16 (ENSCVAG00000008587) #21	ENSCVAG00000008487 #22	TENT4A (ENSCVAG00000008463) #27	ADCY2 (ENSCVAG00000008423) #29	ENSCVAG00000008140	CARMIL1 (ENSCVAG00000008107)	scgn (ENSCVAG00000008001)	CCN3 (ENSCVAG00000007933)	ENSCVAG00000007929	ENSCVAG00000007919	ENSCVAG00000007906	ENSCVAG00000007898	ENSCVAG00000007827	ENSCVAG00000007806	ENSCVAG00000007799	ENSCVAG00000007793	ENSCVAG00000007737
Tiger tail seahorse	MODERN SPECIES	288								nrsn1 (ENSHCOG00000000963)	ENSHCOG00000000960	slc6a3 (ENSHCOG00000000952) #9	LPCAT1 (ENSHCOG00000000944) #11	irx4a (ENSHCOG00000000938) #15	irx2a (ENSHCOG00000000935) #16	irx1a (ENSHCOG00000000932) #19	ADAMTS16 (ENSHCOG00000000925) #21	ENSHCOG00000000919 #22	TENT4A (ENSHCOG00000000915) #27	ADCY2 (ENSHCOG00000000902) #29	DNAH5 (ENSHCOG00000000887)	ENSHCOG00000021087	CCR8 (ENSHCOG00000021093)	ENSHCOG00000021096	CX3CR1 (ENSHCOG00000021098)	cobl (ENSHCOG00000021103)	GRB10 (ENSHCOG00000021109)	cndp1 (ENSHCOG00000021112)	taf2 (ENSHCOG00000021114)	enpp2 (ENSHCOG00000021118)	ADGRB1 (ENSHCOG00000021123)	ENSHCOG00000021125	cep162 (ENSHCOG00000021128)
Pinecone sodierfish	MODERN SPECIES	7	E2F3 (ENSMMDG00005017765)	CDKAL1 (ENSMMDG00005017430)	sox4b (ENSMMDG00005017419)	ENSMMDG00005001972	ENSMMDG00005001206	nrsn1 (ENSMMDG00005024108)	DCDC2 (ENSMMDG00005024107)	slc6a3 (ENSMMDG00005024105) #9	LPCAT1 (ENSMMDG00005024104) #11	irx4a (ENSMMDG00005024102) #15	irx2a (ENSMMDG00005024101) #16	irx1a (ENSMMDG00005024099) #19	ADAMTS16 (ENSMMDG00005024097) #21	ENSMMDG00005024095 #21	ENSMMDG00005024094 #21	ENSMMDG00005024091 #22	ENSMMDG00005024084 #27	ADCY2 (ENSMMDG00005024018) #29	DNAH5 (ENSMMDG00005023978)	ENSMMDG00005023954	CCR8 (ENSMMDG00005023940)	ENSMMDG00005023935	ENSMMDG00005023933	GRB10 (ENSMMDG00005023522)	ddc (ENSMMDG00005023491)	entpd3 (ENSMMDG00005023476)	rbms3 (ENSMMDG00005023469)	azi2 (ENSMMDG00005023467)	cmc1 (ENSMMDG00005023465)	eomesb (ENSMMDG00005023437)	ANKIB1 (ENSMMDG00005023419)
Cod	MODERN SPECIES	2	ENSGMOG00000034747	MBOAT1 (ENSGMOG00000014199)	E2F3 (ENSGMOG00000014178)	CDKAL1 (ENSGMOG00000001207)	sox4b (ENSGMOG00000031834)	ENSGMOG00000031953	nrsn1 (ENSGMOG00000026344)	DCDC2 (ENSGMOG00000029908)	slc6a3 (ENSGMOG00000006703) #9	ENSGMOG00000006686 #11	irx4a (ENSGMOG00000006681) #15	irx2a (ENSGMOG00000033075) #16	ENSGMOG00000033032	irx1a (ENSGMOG00000006669) #19	ADAMTS16 (ENSGMOG00000005407) #21	ENSGMOG00000028748 #22	ENSGMOG00000026013 #27	ENSGMOG00000023662	ENSGMOG00000004768 #29	ENSGMOG00000022719	ENSGMOG00000033263	ENSGMOG00000036436	ENSGMOG00000004653	cobl (ENSGMOG00000032107)	ENSGMOG00000004480	ddc (ENSGMOG00000036492)	ddc (ENSGMOG00000004282)	entpd3 (ENSGMOG00000003928)	RBMS3 (ENSGMOG00000032451)	ENSGMOG00000029549	azi2 (ENSGMOG00000003761)
Protacanthopterygii	ANCESTRAL SPECIES	263													ENSGT00940000161198 #16	ENSGT00940000160429.h.a #19	ENSGT00940000159433 #21	ENSGT00950000183199.b #22
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Huchen	DUPLICATION
Huchen	MODERN SPECIES	4659														ENSHHUG00000044620	ENSHHUG00000044627	ENSHHUG00000044635 #22	ENSHHUG00000044637
Huchen	MODERN SPECIES	8855																ENSHHUG00000000684 #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.a #22
Coho salmon	DUPLICATION
Coho salmon	MODERN SPECIES	31								irx4a (ENSOKIG00005027230) #15	ENSOKIG00005027219	ENSOKIG00005027187	irx2a (ENSOKIG00005027170) #16	irx1a (ENSOKIG00005027150) #19	ENSOKIG00005027148	ENSOKIG00005027127	ENSOKIG00005027103 #22	ENSOKIG00005027068 #22	FAM210A (ENSOKIG00005027051)	ldlrad4b (ENSOKIG00005027022)	ENSOKIG00005027001	ENSOKIG00005026958	ENSOKIG00005026936	SEH1L (ENSOKIG00005026610)	ptpn2a (ENSOKIG00005026578)	cep76 (ENSOKIG00005026474)	id4 (ENSOKIG00005026460)	ENSOKIG00005026446	NXPE3 (ENSOKIG00005018374)	ncalda (ENSOKIG00005018360)	ENSOKIG00005018355	ENSOKIG00005018205	ENSOKIG00005017998
Coho salmon	MODERN SPECIES	31									irx4a (ENSOKIG00005027230) #15	ENSOKIG00005027219	ENSOKIG00005027187	irx2a (ENSOKIG00005027170) #16	irx1a (ENSOKIG00005027150) #19	ENSOKIG00005027148	ENSOKIG00005027127	ENSOKIG00005027103 #22	ENSOKIG00005027068 #22	FAM210A (ENSOKIG00005027051)	ldlrad4b (ENSOKIG00005027022)	ENSOKIG00005027001	ENSOKIG00005026958	ENSOKIG00005026936	SEH1L (ENSOKIG00005026610)	ptpn2a (ENSOKIG00005026578)	cep76 (ENSOKIG00005026474)	id4 (ENSOKIG00005026460)	ENSOKIG00005026446	NXPE3 (ENSOKIG00005018374)	ncalda (ENSOKIG00005018360)	ENSOKIG00005018355	ENSOKIG00005018205
Rainbow trout	MODERN SPECIES	142															ENSOMYG00000071895	ENSOMYG00000051334 #22	ENSOMYG00000070626 #22	ENSOMYG00000066089	mc2r (ENSOMYG00000023652)	FAM210A (ENSOMYG00000065862)	ldlrad4b (ENSOMYG00000038984)	ENSOMYG00000060198	CEP192 (ENSOMYG00000056302)	SEH1L (ENSOMYG00000038901)	ENSOMYG00000069998	PTPN2 (ENSOMYG00000055302)	CEP76 (ENSOMYG00000066050)	ENSOMYG00000074957	ENSOMYG00000052390
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.a.b #22
Huchen	MODERN SPECIES	9702																ENSHHUG00000007658 #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
Salmo	ANCESTRAL SPECIES																	ENSGT00950000183199.b.m.b #22
River trout	DUPLICATION
River trout	MODERN SPECIES	234												ENSSTUG00000041071	fam210ab (ENSSTUG00000041063)	mc2r (ENSSTUG00000041045)	ENSSTUG00000040980 #22	ENSSTUG00000040962 #22	ENSSTUG00000040939 #22	mc2r (ENSSTUG00000040930)	fam210ab (ENSSTUG00000040923)
River trout	MODERN SPECIES	234											ENSSTUG00000041071	fam210ab (ENSSTUG00000041063)	mc2r (ENSSTUG00000041045)	ENSSTUG00000040980 #22	ENSSTUG00000040962 #22	ENSSTUG00000040939 #22	mc2r (ENSSTUG00000040930)	fam210ab (ENSSTUG00000040923)
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000183199.b.n #22
Salmoninae_a	ANCESTRAL SPECIES	284																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c
Salmo	ANCESTRAL SPECIES	322																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	250																ENSSSAG00000092660 #22	mc2r (ENSSSAG00000020389)	fam210ab (ENSSSAG00000090105)	ldlrad4b (ENSSSAG00000098836)
Atlantic salmon	MODERN SPECIES	413															ENSSSAG00000108349	ENSSSAG00000087379 #22	ENSSSAG00000093585
Atlantic salmon	MODERN SPECIES	412																ENSSSAG00000112107 #22
Atlantic salmon	MODERN SPECIES	818																ENSSSAG00000118968 #22	mc2r (ENSSSAG00000090475)	ENSSSAG00000120298	ldlrad4b (ENSSSAG00000098527)
Atlantic salmon	MODERN SPECIES	819																ENSSSAG00000057270 #22	ENSSSAG00000122126	mc2r (ENSSSAG00000107026)	ENSSSAG00000089072	ldlrad4b (ENSSSAG00000009571)
River trout	MODERN SPECIES	234												fam210ab (ENSSTUG00000040923)	mc2r (ENSSTUG00000040930)	ENSSTUG00000040939 #22	ENSSTUG00000040962 #22	ENSSTUG00000040980 #22	mc2r (ENSSTUG00000041045)	fam210ab (ENSSTUG00000041063)	ENSSTUG00000041071
Oncorhynchus	ANCESTRAL SPECIES	100																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a	ENSGT00390000000724.c.b.c	ENSGT00940000154686.b.e.a	ENSGT00390000000781.g	ENSGT00940000162435	ENSGT00940000154697.a.a.a.a	ENSGT00420000029792.qb.a.e.a	ENSGT00390000017478	ENSGT00940000159321	ENSGT00940000160344	ENSGT00940000160530	ENSGT00940000154684.cb.a.a.a	ENSGT00500000044936.c.a	ENSGT00530000063692.a
Rainbow trout	MODERN SPECIES	142														ENSOMYG00000071895	ENSOMYG00000051334 #22	ENSOMYG00000070626 #22	ENSOMYG00000066089	mc2r (ENSOMYG00000023652)	FAM210A (ENSOMYG00000065862)	ldlrad4b (ENSOMYG00000038984)	ENSOMYG00000060198	CEP192 (ENSOMYG00000056302)	SEH1L (ENSOMYG00000038901)	ENSOMYG00000069998	PTPN2 (ENSOMYG00000055302)	CEP76 (ENSOMYG00000066050)	ENSOMYG00000074957	ENSOMYG00000052390
Oncorhynchus_a	ANCESTRAL SPECIES	368																ENSGT00950000183199.b.n #22	ENSGT01030000234510.a.a.b	ENSGT00940000156554.a.a	ENSGT00390000000724.c.b.c
Chinook salmon	MODERN SPECIES	1192															ENSOTSG00005023651	ENSOTSG00005023647 #22	mc2r (ENSOTSG00005023646)	fam210ab (ENSOTSG00005023645)
Northern pike	MODERN SPECIES	15	SEH1L (ENSELUG00000003728)	CEP192 (ENSELUG00000003767)	ldlrad4b (ENSELUG00000003793)	fam210ab (ENSELUG00000003811)	mc5rb (ENSELUG00000003825)	mc2r (ENSELUG00000003832)	irgf1 (ENSELUG00000003864)	IRGC (ENSELUG00000031960)	ENSELUG00000003885	irx2a (ENSELUG00000003905) #16	ENSELUG00000031605	ENSELUG00000026048	irx1a (ENSELUG00000003928) #19	ADAMTS16 (ENSELUG00000003956) #21	ENSELUG00000003940	ENSELUG00000031442 #22	ankrd10b (ENSELUG00000004002)	ing1 (ENSELUG00000029885)	naxd (ENSELUG00000004084)	rab20 (ENSELUG00000004092)	ENSELUG00000004187	ENSELUG00000030152	ENSELUG00000026538	ENSELUG00000004234	COL4A1 (ENSELUG00000004344)	IRS2 (ENSELUG00000004409)	MYO16 (ENSELUG00000004440)	tnfsf13b (ENSELUG00000004450)	abhd13 (ENSELUG00000004460)	NALF1 (ENSELUG00000004463)	CCKBR (ENSELUG00000004477)
Spotted gar	MODERN SPECIES	649	ENSLOCG00000008963	mboat1 (ENSLOCG00000008952)	e2f3 (ENSLOCG00000008942)	CDKAL1 (ENSLOCG00000008933)	sox4b (ENSLOCG00000018338)	nrsn1l (ENSLOCG00000008928)	DCDC2 (ENSLOCG00000008919)	slc6a3 (ENSLOCG00000008899) #9	lpcat1 (ENSLOCG00000008876) #11	mrpl36 (ENSLOCG00000008869) #13	irx4a (ENSLOCG00000008860) #15	ENSLOCG00000008854	irx2a (ENSLOCG00000008842) #16	irx1a (ENSLOCG00000008834) #19	ADAMTS16 (ENSLOCG00000008808) #21	ICE1 (ENSLOCG00000008797) #22	med10 (ENSLOCG00000008783) #23	UBE2QL1 (ENSLOCG00000008774) #24	nsun2 (ENSLOCG00000008755) #25	srd5a1 (ENSLOCG00000008745) #26	TENT4A (ENSLOCG00000008727) #27	zgc:91890 (ENSLOCG00000008715)	slc52a2 (ENSLOCG00000008703)	ENSLOCG00000008699	ENSLOCG00000008682	ENSLOCG00000008673	pleca (ENSLOCG00000008626)	vps28 (ENSLOCG00000008615)	mapk15 (ENSLOCG00000008598)	grinaa (ENSLOCG00000008582)	ENSLOCG00000008569
Reedfish	MODERN SPECIES	4	ENSECRG00000012599	slc6a19b (ENSECRG00000012551)	slc6a18 (ENSECRG00000012511)	TERT (ENSECRG00000012478) #8	clptm1l (ENSECRG00000012421)	slc6a3 (ENSECRG00000012348) #9	lpcat1 (ENSECRG00000012289) #11	mrpl36 (ENSECRG00000012269) #13	ndufs6 (ENSECRG00000012255) #14	irx4a (ENSECRG00000012242) #15	ENSECRG00000012221	irx2a (ENSECRG00000012213) #16	irx1a (ENSECRG00000012192) #19	tmed3 (ENSECRG00000012180)	ENSECRG00000012108 #21	ENSECRG00000012036 #22	ENSECRG00000012012	nsun2 (ENSECRG00000011957) #25	srd5a1 (ENSECRG00000011900) #26	TENT4A (ENSECRG00000011884) #27	adcy2b (ENSECRG00000011869) #29	CFAP90 (ENSECRG00000011845) #30	DNAH5 (ENSECRG00000011742)	ENSECRG00000011637	trioa (ENSECRG00000011501)	ENSECRG00000011449	glb1 (ENSECRG00000011418)	ENSECRG00000011387	ENSECRG00000011368	ENSECRG00000011343	CX3CR1 (ENSECRG00000018885)
Elephant shark	MODERN SPECIES	1564															ADAMTS16 (ENSCMIG00000007997) #21	ENSCMIG00000007981 #22	med10 (ENSCMIG00000007979) #23	nsun2 (ENSCMIG00000007868) #25	srd5a1 (ENSCMIG00000007840) #26	TENT4A (ENSCMIG00000007824) #27	adcy2b (ENSCMIG00000007660) #29	CFAP90 (ENSCMIG00000007612) #30	ENSCMIG00000007590	ENSCMIG00000007470	VPS4B (ENSCMIG00000007311)	kdsr (ENSCMIG00000007261)	BCL2 (ENSCMIG00000007255)	gsdme (ENSCMIG00000007253)	OSBPL3 (ENSCMIG00000007003)	cycsb (ENSCMIG00000006898)	ENSCMIG00000006893