Artiodactyla_a	ANCESTRAL SPECIES	17																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT01030000234871
Artiodactyla_b	ANCESTRAL SPECIES	10																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT01030000234871
Cetacea	ANCESTRAL SPECIES	11																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a #26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT01030000234871
Odontoceti	ANCESTRAL SPECIES	10																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787
Odontoceti_a	ANCESTRAL SPECIES	9																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787
Odontoceti_b	ANCESTRAL SPECIES	10																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT00890000139472.f.b #35	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37
Monodontidae	ANCESTRAL SPECIES	8																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a.a.a #26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT00890000139472.f.b #35	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37
Beluga whale	MODERN SPECIES	25																PARD6G (ENSDLEG00000004916) #22	ADNP2 (ENSDLEG00000004923) #23	RBFA (ENSDLEG00000004928) #24	ENSDLEG00000004936 #25	TXNL4A (ENSDLEG00000004939) #26	ENSDLEG00000004942 #27	PQLC1 (ENSDLEG00000004948) #28	KCNG2 (ENSDLEG00000004952) #29	CTDP1 (ENSDLEG00000004958) #30	ENSDLEG00000004966 #31	NFATC1 (ENSDLEG00000004971) #32	ATP9B (ENSDLEG00000005315) #33	SALL3 (ENSDLEG00000007843) #34	ENSDLEG00000007848 #35	GALR1 (ENSDLEG00000007850) #36	MBP (ENSDLEG00000007855) #37
Narwhal	MODERN SPECIES	295																PARD6G (ENSMMNG00015001889) #22	ADNP2 (ENSMMNG00015001907) #23	RBFA (ENSMMNG00015003973) #24	ENSMMNG00015003996	ENSMMNG00015004029 #26	HSBP1L1 (ENSMMNG00015004051)	SLC66A2 (ENSMMNG00015004076) #28	KCNG2 (ENSMMNG00015004101) #29	CTDP1 (ENSMMNG00015004114) #30	NFATC1 (ENSMMNG00015004144) #32	ATP9B (ENSMMNG00015004205) #33	SALL3 (ENSMMNG00015004296) #34	GALR1 (ENSMMNG00015004319) #36	MBP (ENSMMNG00015004355) #37	ZNF236 (ENSMMNG00015004434)	ENSMMNG00015004498
Vaquita	MODERN SPECIES	5																PARD6G (ENSPSNG00000012198) #22	ADNP2 (ENSPSNG00000012241) #23	RBFA (ENSPSNG00000012259) #24	ENSPSNG00000012284	TXNL4A (ENSPSNG00000012378) ##26	ENSPSNG00000012460	ENSPSNG00000012516 #28	KCNG2 (ENSPSNG00000012622) #29	CTDP1 (ENSPSNG00000012690) #30	ENSPSNG00000012721 #31	NFATC1 (ENSPSNG00000012745) #32	ATP9B (ENSPSNG00000012909) #33	SALL3 (ENSPSNG00000013174) #34	ENSPSNG00000013413 #35	GALR1 (ENSPSNG00000013471) #36	MBP (ENSPSNG00000013612) #37
Dolphin	MODERN SPECIES	3137																PARD6G (ENSTTRG00000002401) #22	ADNP2 (ENSTTRG00000002400) #23
Sperm whale	MODERN SPECIES	10																PARD6G (ENSPCTG00005015672) #22	ADNP2 (ENSPCTG00005015654) #23	RBFA (ENSPCTG00005015634) #24	TXNL4A (ENSPCTG00005015555) ##26	HSBP1L1 (ENSPCTG00005015498)	PQLC1 (ENSPCTG00005015359) #28	KCNG2 (ENSPCTG00005015311) #29	CTDP1 (ENSPCTG00005014437) #30	ENSPCTG00005014376 #32	ATP9B (ENSPCTG00005014193) #33	SALL3 (ENSPCTG00005013970) #34	GALR1 (ENSPCTG00005013906) #36	MBP (ENSPCTG00005013054) #37	ZNF236 (ENSPCTG00005012375)	ZNF516 (ENSPCTG00005012183)	TSHZ1 (ENSPCTG00005012158)
Blue whale	MODERN SPECIES	5																PARD6G (ENSBMSG00010009629) #22	ADNP2 (ENSBMSG00010009611) #23	RBFA (ENSBMSG00010009594) #24	TXNL4A (ENSBMSG00010009583) #26	SLC66A2 (ENSBMSG00010009573) #28	KCNG2 (ENSBMSG00010009563) #29	CTDP1 (ENSBMSG00010009542) #30	ENSBMSG00010009531 #31	NFATC1 (ENSBMSG00010009496) #32	ATP9B (ENSBMSG00010009457) #33	SALL3 (ENSBMSG00010009423) #34	ENSBMSG00010009414	GALR1 (ENSBMSG00010009407) #36	MBP (ENSBMSG00010009319) #37	ENSBMSG00010009296	ENSBMSG00010009291
Pecora	ANCESTRAL SPECIES	26																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT01030000234871
Yarkand deer	MODERN SPECIES	19														ENSCHYG00000014407	ENSCHYG00000014347	PARD6G (ENSCHYG00000014295) #22	ADNP2 (ENSCHYG00000014078) #23	RBFA (ENSCHYG00000026035) #24	ENSCHYG00000026029	TXNL4A (ENSCHYG00000026004) ##26	HSBP1L1 (ENSCHYG00000025985)	SLC66A2 (ENSCHYG00000025926) #28	KCNG2 (ENSCHYG00000025901) #29	CTDP1 (ENSCHYG00000025858) #30	ENSCHYG00000025845 #31	NFATC1 (ENSCHYG00000025717) #32	ATP9B (ENSCHYG00000025490) #33	SALL3 (ENSCHYG00000025411) #34	ENSCHYG00000025397	GALR1 (ENSCHYG00000025374) #36	MBP (ENSCHYG00000025251) #37
Percora_a	ANCESTRAL SPECIES	28																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787
Bovidae	ANCESTRAL SPECIES	28															ENSGT01100000263496.A.b	ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787
Caprinae	ANCESTRAL SPECIES	25									ENSGT01100000263496.D.a.u.b.b	ENSGT01100000263496.D.b.a.e.t.b.b	ENSGT01100000263496.D.a.u.b.a.b	ENSGT01100000263496.D.a.u.b.a.a	ENSGT01100000263496.C.c.a.t	ENSGT01050000244815.A.c.a.a.b.a.b	ENSGT01100000263496.A.b	ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787	ENSGT01030000234871
Rambouillet Sheep	MODERN SPECIES	15													ENSOARG00020011052	ENSOARG00020011254	ENSOARG00020011414	PARD6G (ENSOARG00020011549) #22	ADNP2 (ENSOARG00020011588) #23	ENSOARG00020011645 #24	ENSOARG00020011706	TXNL4A (ENSOARG00020011771) ##26	HSBP1L1 (ENSOARG00020011927)	SLC66A2 (ENSOARG00020011960) #28	KCNG2 (ENSOARG00020012110) #29	CTDP1 (ENSOARG00020012196) #30	NFATC1 (ENSOARG00020012783) #32	ATP9B (ENSOARG00020014579) #33	GALR1 (ENSOARG00020015092) #36	ZNF236 (ENSOARG00020015393)	ENSOARG00020015995	TSHZ1 (ENSOARG00020016102)	PTGR3 (ENSOARG00020016189)
Goat	MODERN SPECIES	16										ENSCHIG00000000424	ENSCHIG00000000470	ENSCHIG00000019233	ENSCHIG00000019729	ENSCHIG00000014102	ENSCHIG00000019017	PARD6G (ENSCHIG00000021859) #22	ADNP2 (ENSCHIG00000010631) #23	RBFA (ENSCHIG00000012122) #24	ENSCHIG00000016104	TXNL4A (ENSCHIG00000019218) ##26	ENSCHIG00000021857 #27	SLC66A2 (ENSCHIG00000001513) #28	KCNG2 (ENSCHIG00000011977) #29	CTDP1 (ENSCHIG00000016412) #30	NFATC1 (ENSCHIG00000020951) #32	ATP9B (ENSCHIG00000018159) #33	SALL3 (ENSCHIG00000000145) #34	ENSCHIG00000000252	GALR1 (ENSCHIG00000000288) #36	ENSCHIG00000000358 #37	ZNF236 (ENSCHIG00000000391)
Bovinae	ANCESTRAL SPECIES	28															ENSGT01100000263496.A.b.d.b	ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT01030000234871
Bos	ANCESTRAL SPECIES	29															ENSGT01100000263496.A.b.d.b	ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.b.a.b	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641.h #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37
Bos_b	ANCESTRAL SPECIES	34															ENSGT01100000263496.A.b.d.b	ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.b.a.b	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641.h #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37
Cow	MODERN SPECIES	16														OR9M1 (ENSBTAG00000051525)	OR9M1D (ENSBTAG00000050400)	PARD6G (ENSBTAG00000005917) #22	ADNP2 (ENSBTAG00000005916) #23	RBFA (ENSBTAG00000036297) #24	ENSBTAG00000036298	TXNL4A (ENSBTAG00000013587) ##26	ENSBTAG00000050688 #27	SLC66A2 (ENSBTAG00000054103) #28	KCNG2 (ENSBTAG00000013665) #29	CTDP1 (ENSBTAG00000053484) #30	NFATC1 (ENSBTAG00000000656) #32	ATP9B (ENSBTAG00000001224) #33	SALL3 (ENSBTAG00000050200) #34	GALR1 (ENSBTAG00000021003) #36	MBP (ENSBTAG00000022890) #37	ZNF236 (ENSBTAG00000017517)	ENSBTAG00000053937
Hybrid Bos Indicus	MODERN SPECIES	16									ENSBIXG00005023887	ENSBIXG00005023870	ENSBIXG00005023830	ENSBIXG00005004076	ENSBIXG00005023773	ENSBIXG00005023762	ENSBIXG00005023753	PARD6G (ENSBIXG00005006840) #22	ADNP2 (ENSBIXG00005004059) #23	ENSBIXG00005023670	RBFA (ENSBIXG00005023663) #24	ENSBIXG00005023644	TXNL4A (ENSBIXG00005023620) ##26	HSBP1L1 (ENSBIXG00005023541)	ENSBIXG00005023522 #28	KCNG2 (ENSBIXG00005004008) #29	CTDP1 (ENSBIXG00005023401) #30	ENSBIXG00005023369 #31	NFATC1 (ENSBIXG00005023346) #32	ATP9B (ENSBIXG00005006472) #33	SALL3 (ENSBIXG00005023059) #34	ENSBIXG00005023023	GALR1 (ENSBIXG00005023001) #36
Bos_a	ANCESTRAL SPECIES	73																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT01100000263480.a.a.b.b.b.a.b.a.b.b.a.b	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.b ##26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641.h #30	ENSGT00940000155163.b #31	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37
Domestic yak	MODERN SPECIES	13	ENSBGRG00000019835	ZNF24 (ENSBGRG00000019773)	INO80C (ENSBGRG00000019595)	GALNT1 (ENSBGRG00000019395)	C18orf21 (ENSBGRG00000019254)	RPRD1A (ENSBGRG00000019009)	SLC39A6 (ENSBGRG00000018855)	ELP2 (ENSBGRG00000017287)	MOCOS (ENSBGRG00000016605)	FHOD3 (ENSBGRG00000015603)	TPGS2 (ENSBGRG00000015437)	ENSBGRG00000015416	KIAA1328 (ENSBGRG00000015254)	ENSBGRG00000015192	ENSBGRG00000015067	PARD6G (ENSBGRG00000014943) #22	ADNP2 (ENSBGRG00000024707) #23	ENSBGRG00000024692	ENSBGRG00000024671 #24	ENSBGRG00000024626	TXNL4A (ENSBGRG00000024576) ##26	HSBP1L1 (ENSBGRG00000024554)	ENSBGRG00000024398 #28	KCNG2 (ENSBGRG00000024339) #29	CTDP1 (ENSBGRG00000024256) #30	ENSBGRG00000024239 #31	NFATC1 (ENSBGRG00000023817) #32	ATP9B (ENSBGRG00000023552) #33	SALL3 (ENSBGRG00000023520) #34	GALR1 (ENSBGRG00000023482) #36	ENSBGRG00000023225 #37
Wild yak	MODERN SPECIES	1987																PARD6G (ENSBMUG00000018236) #22	ADNP2 (ENSBMUG00000018260) #23	RBFA (ENSBMUG00000018295) #24	ENSBMUG00000018308	TXNL4A (ENSBMUG00000018332) ##26	ENSBMUG00000018359 #27	SLC66A2 (ENSBMUG00000018392) #28	ENSBMUG00000018406 #29	CTDP1 (ENSBMUG00000018428) #30	ENSBMUG00000018444	ENSBMUG00000018452 #32
American bison	MODERN SPECIES	3267																PARD6G (ENSBBBG00000003274) #22	ADNP2 (ENSBBBG00000014358) #23	ENSBBBG00000014378	TXNL4A (ENSBBBG00000014383) ##26	HSBP1L1 (ENSBBBG00000014388)	SLC66A2 (ENSBBBG00000003309) #28	CTDP1 (ENSBBBG00000003330) #30	ENSBBBG00000014441 #32	ATP9B (ENSBBBG00000009131) #33	SALL3 (ENSBBBG00000003511) #34	GALR1 (ENSBBBG00000014588) #36	MBP (ENSBBBG00000014716) #37	ZNF236 (ENSBBBG00000007133)	ZNF516 (ENSBBBG00000014795)	TSHZ1 (ENSBBBG00000014803)	ENSBBBG00000002833
Siberian musk deer	MODERN SPECIES	373														ENSMMSG00000006868	ENSMMSG00000006895	PARD6G (ENSMMSG00000006923) #22	ENSMMSG00000006967	ADNP2 (ENSMMSG00000006994) #23	ENSMMSG00000007011	ENSMMSG00000007032	RBFA (ENSMMSG00000007047) #24	ENSMMSG00000007067	ENSMMSG00000007113 ##26	HSBP1L1 (ENSMMSG00000007184)	SLC66A2 (ENSMMSG00000007214) #28	KCNG2 (ENSMMSG00000007319) #29	CTDP1 (ENSMMSG00000007350) #30	NFATC1 (ENSMMSG00000007403) #32	ATP9B (ENSMMSG00000007533) #33	SALL3 (ENSMMSG00000007960) #34	GALR1 (ENSMMSG00000008077) #36
Camelidae	ANCESTRAL SPECIES	53																ENSGT00950000183211.a.b #22	ENSGT00530000063631.a #23	ENSGT00390000011362 #24	ENSGT00940000162740	ENSGT00390000010779.a.a.a.a #26	ENSGT00550000076117	ENSGT00390000002381.a #28	ENSGT00940000160858 #29	ENSGT00390000015641 #30	ENSGT00940000157616 #32	ENSGT00940000157071 #33	ENSGT00940000159356.a.a #34	ENSGT01050000244841.A.b.a.b.a.a #36	ENSGT00390000014772 #37	ENSGT00940000156787	ENSGT00940000160839
Arabian camel	MODERN SPECIES	23																PARD6G (ENSCDRG00005019778) #22	ADNP2 (ENSCDRG00005019800) #23	RBFA (ENSCDRG00005019809) #24	ENSCDRG00005008919	ENSCDRG00005008969 #26	HSBP1L1 (ENSCDRG00005009081)	SLC66A2 (ENSCDRG00005009135) #28	KCNG2 (ENSCDRG00005009403) #29	CTDP1 (ENSCDRG00005009526) #30	NFATC1 (ENSCDRG00005009800) #32	ATP9B (ENSCDRG00005009917) #33	SALL3 (ENSCDRG00005010105) #34	GALR1 (ENSCDRG00005010287) #36	MBP (ENSCDRG00005010386) #37	ZNF236 (ENSCDRG00005011227)	ZNF516 (ENSCDRG00005011507)
Alpaca	MODERN SPECIES	2211																PARD6G (ENSVPAG00000007958) #22