Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000163703.a	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00910000146955	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Glires	ANCESTRAL SPECIES	17	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000163703.a	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00910000146955	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000163703.a	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00910000146955	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854 #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Prairie vole	MODERN SPECIES	357	Stau1 (ENSMOCG00000018743) #7	Ddx27 (ENSMOCG00000019594) #8	Znfx1 (ENSMOCG00000005411) #9	Kcnb1 (ENSMOCG00000001197) #10	Ptgis (ENSMOCG00000012430) #11	B4galt5 (ENSMOCG00000011995) #12	Slc9a8 (ENSMOCG00000004864) #13	Spata2 (ENSMOCG00000017632) #14	Rnf114 (ENSMOCG00000015529) #15	Snai1 (ENSMOCG00000007847) #16	Ube2v1 (ENSMOCG00000012071) #17	Peds1 (ENSMOCG00000010275) #18	Cebpb (ENSMOCG00000010607) #19	Ptpn1 (ENSMOCG00000001636) #20	Ripor3 (ENSMOCG00000010739) #21	Pard6b (ENSMOCG00000003321) #22	ENSMOCG00000001467 #23	Dpm1 (ENSMOCG00000015289) #24	Mocs3 (ENSMOCG00000003624) #25	Kcng1 (ENSMOCG00000009238) #26	Nfatc2 (ENSMOCG00000000259) #27	Atp9a (ENSMOCG00000016994) #28	Sall4 (ENSMOCG00000018245) #29	Zfp64 (ENSMOCG00000004895) #30	ENSMOCG00000013704 #31	Zfp217 (ENSMOCG00000018704) #32	Bcas1 (ENSMOCG00000004294) #33	Cyp24a1 (ENSMOCG00000016929) #34	ENSMOCG00000000248 #35	ENSMOCG00000013934 #36	Dok5 (ENSMOCG00000006196) #37
Northern American deer mouse	MODERN SPECIES	17	Cse1l (ENSPEMG00000000944)	Stau1 (ENSPEMG00000022045) #7	Ddx27 (ENSPEMG00000023215) #8	Znfx1 (ENSPEMG00000008042) #9	ENSPEMG00000001839	Ptgis (ENSPEMG00000018632) #11	ENSPEMG00000000220	Slc9a8 (ENSPEMG00000022094) #13	Spata2 (ENSPEMG00000027358) #14	ENSPEMG00000023570	Snai1 (ENSPEMG00000023213) #16	ENSPEMG00000001442 ##17	Peds1 (ENSPEMG00000006010) #18	Ptpn1 (ENSPEMG00000012811) #20	Ripor3 (ENSPEMG00000011182) #21	Pard6b (ENSPEMG00000015881) #22	Adnp (ENSPEMG00000028284) #23	Dpm1 (ENSPEMG00000022392) #24	ENSPEMG00000023371 #25	Kcng1 (ENSPEMG00000021560) #26	Nfatc2 (ENSPEMG00000022457) #27	ENSPEMG00000028160	Atp9a (ENSPEMG00000022700) #28	Sall4 (ENSPEMG00000022706) #29	Zfp64 (ENSPEMG00000014980) #30	ENSPEMG00000014233	Tshz2 (ENSPEMG00000029085) #31	ENSPEMG00000029761	Zfp217 (ENSPEMG00000011097) #32	Bcas1 (ENSPEMG00000000354) #33	Cyp24a1 (ENSPEMG00000014776) #34
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Golden Hamster	MODERN SPECIES	664	Cse1l (ENSMAUG00000001362)	Stau1 (ENSMAUG00000013846) #7	Ddx27 (ENSMAUG00000000552) #8	Znfx1 (ENSMAUG00000016416) #9	Kcnb1 (ENSMAUG00000019058) #10	Ptgis (ENSMAUG00000016166) #11	B4galt5 (ENSMAUG00000015144) #12	Slc9a8 (ENSMAUG00000018259) #13	Spata2 (ENSMAUG00000020910) #14	Rnf114 (ENSMAUG00000019385) #15	Snai1 (ENSMAUG00000021592) #16	Ube2v1 (ENSMAUG00000020962) ##17	Peds1 (ENSMAUG00000016961) #18	Ptpn1 (ENSMAUG00000010010) #20	Ripor3 (ENSMAUG00000010157) #21	Pard6b (ENSMAUG00000010497) #22	Adnp (ENSMAUG00000020819) #23	Dpm1 (ENSMAUG00000016233) #24	Mocs3 (ENSMAUG00000007351) #25	Kcng1 (ENSMAUG00000015676) #26	Nfatc2 (ENSMAUG00000011773) #27	Atp9a (ENSMAUG00000004916) #28	Sall4 (ENSMAUG00000015814) #29	Zfp64 (ENSMAUG00000015438) #30	ENSMAUG00000003995 #31	ENSMAUG00000015308 #33	Cyp24a1 (ENSMAUG00000013246) #34	Pfdn4 (ENSMAUG00000002277)	ENSMAUG00000001483	Cbln4 (ENSMAUG00000013556)	Mc3r (ENSMAUG00000006998)
Chinese hamster chok1gshd	MODERN SPECIES	195	Stau1 (ENSCGRG00001013453) #7	Ddx27 (ENSCGRG00001015330) #8	Znfx1 (ENSCGRG00001017355) #9	Kcnb1 (ENSCGRG00001019221) #10	Ptgis (ENSCGRG00001019919) #11	B4galt5 (ENSCGRG00001021312) #12	Slc9a8 (ENSCGRG00001022939) #13	Spata2 (ENSCGRG00001005279) #14	Rnf114 (ENSCGRG00001006890) #15	Snai1 (ENSCGRG00001007749) #16	Ube2v1 (ENSCGRG00001009565) #17	Peds1 (ENSCGRG00001010523) #18	Cebpb (ENSCGRG00001001737) #19	Ptpn1 (ENSCGRG00001012267) #20	Ripor3 (ENSCGRG00001013099) #21	Pard6b (ENSCGRG00001014206) #22	Adnp (ENSCGRG00001004111) #23	Dpm1 (ENSCGRG00001007175) #24	Mocs3 (ENSCGRG00001003680) #25	Kcng1 (ENSCGRG00001009827) #26	Nfatc2 (ENSCGRG00001012491) #27	Atp9a (ENSCGRG00001017172) #28	Sall4 (ENSCGRG00001019569) #29	Zfp64 (ENSCGRG00001020443) #30	ENSCGRG00001015533	Tshz2 (ENSCGRG00001000496) #31	ENSCGRG00001007530	Zfp217 (ENSCGRG00001002600) #32	Bcas1 (ENSCGRG00001007157) #33	Cyp24a1 (ENSCGRG00001010160) #34	Pfdn4 (ENSCGRG00001010542)
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Mus	ANCESTRAL SPECIES	1	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT01090000262946
Mus_A	ANCESTRAL SPECIES		ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B.g.b #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT01090000262946
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B.g.b #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT00940000160725 #37
Mouse	MODERN SPECIES	11	Ddx27 (ENSMUSG00000017999) #8	Znfx1 (ENSMUSG00000039501) #9	Kcnb1 (ENSMUSG00000050556) #10	Ptgis (ENSMUSG00000017969) #11	B4galt5 (ENSMUSG00000017929) #12	Slc9a8 (ENSMUSG00000039463) #13	Spata2 (ENSMUSG00000047030) #14	Rnf114 (ENSMUSG00000006418) #15	Snai1 (ENSMUSG00000042821) #16	Ube2v1 (ENSMUSG00000078923) #17	Gm20431 (ENSMUSG00000089739)	Peds1 (ENSMUSG00000090213) #18	Cebpb (ENSMUSG00000056501) #19	Ptpn1 (ENSMUSG00000027540) #20	Ripor3 (ENSMUSG00000074577) #21	Pard6b (ENSMUSG00000044641) #22	Adnp (ENSMUSG00000051149) #23	Dpm1 (ENSMUSG00000078919) #24	Mocs3 (ENSMUSG00000074576) #25	Kcng1 (ENSMUSG00000074575) #26	Nfatc2 (ENSMUSG00000027544) #27	Atp9a (ENSMUSG00000027546) #28	Sall4 (ENSMUSG00000027547) #29	Zfp64 (ENSMUSG00000027551) #30	Tshz2 (ENSMUSG00000047907) #31	Zfp217 (ENSMUSG00000052056) #32	Bcas1 (ENSMUSG00000013523) #33	Cyp24a1 (ENSMUSG00000038567) #34	Pfdn4 (ENSMUSG00000052033)	Dok5 (ENSMUSG00000027560) #37	Cbln4 (ENSMUSG00000067578)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00700000106212	ENSGT00390000008325.b.b	ENSGT00940000155268	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854.ib.b.b #17	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00530000063631.b #23	ENSGT00940000153481.B.g.b #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696	ENSGT01090000262956
Steppe mouse	MODERN SPECIES	2968	ENSMSIG00000031338	Kcnb1 (ENSMSIG00000031340) #10	Ptgis (ENSMSIG00000031341) #11	B4galt5 (ENSMSIG00000031348) #12	Slc9a8 (ENSMSIG00000031352) #13	ENSMSIG00000031374 #14	Rnf114 (ENSMSIG00000031377) #15	ENSMSIG00000031378	ENSMSIG00000031380	Snai1 (ENSMSIG00000031381) #16	Ube2v1 (ENSMSIG00000031383) #17	ENSMSIG00000031391 #19	ENSMSIG00000031393	Ptpn1 (ENSMSIG00000031396) #20	Ripor3 (ENSMSIG00000031399) #21	Pard6b (ENSMSIG00000031403) #22	Adnp (ENSMSIG00000031404) #23	ENSMSIG00000031406 #24	Mocs3 (ENSMSIG00000031411) #25	ENSMSIG00000031412	Kcng1 (ENSMSIG00000031413) #26
spretus	MODERN SPECIES	11	Ddx27 (MGP_SPRETEiJ_G0025620) #8	Znfx1 (MGP_SPRETEiJ_G0025621) #9	MGP_SPRETEiJ_G0025622	Kcnb1 (MGP_SPRETEiJ_G0025623) #10	Ptgis (MGP_SPRETEiJ_G0025624) #11	B4galt5 (MGP_SPRETEiJ_G0025625) #12	Slc9a8 (MGP_SPRETEiJ_G0025626) #13	Spata2 (MGP_SPRETEiJ_G0025627) #14	Rnf114 (MGP_SPRETEiJ_G0025628) #15	Snai1 (MGP_SPRETEiJ_G0025629) #16	MGP_SPRETEiJ_G0025630 #17	Peds1 (MGP_SPRETEiJ_G0025631) #18	Cebpb (MGP_SPRETEiJ_G0025632) #19	Ptpn1 (MGP_SPRETEiJ_G0025633) #20	Ripor3 (MGP_SPRETEiJ_G0025634) #21	Pard6b (MGP_SPRETEiJ_G0025635) #22	Adnp (MGP_SPRETEiJ_G0025636) #23	MGP_SPRETEiJ_G0025637 #24	MGP_SPRETEiJ_G0025638 #24	Mocs3 (MGP_SPRETEiJ_G0025639) #25	Kcng1 (MGP_SPRETEiJ_G0025640) #26	Nfatc2 (MGP_SPRETEiJ_G0025641) #27	Atp9a (MGP_SPRETEiJ_G0025642) #28	Sall4 (MGP_SPRETEiJ_G0025643) #29	Zfp64 (MGP_SPRETEiJ_G0025644) #30	Tshz2 (MGP_SPRETEiJ_G0025645) #31	Zfp217 (MGP_SPRETEiJ_G0025646) #32	Bcas1 (MGP_SPRETEiJ_G0025647) #33	Cyp24a1 (MGP_SPRETEiJ_G0025648) #34	Pfdn4 (MGP_SPRETEiJ_G0025649)	MGP_SPRETEiJ_G0025650
Ryukyu mouse	MODERN SPECIES	11	Ddx27 (MGP_CAROLIEiJ_G0024700) #8	Znfx1 (MGP_CAROLIEiJ_G0024701) #9	MGP_CAROLIEiJ_G0024702	Kcnb1 (MGP_CAROLIEiJ_G0024703) #10	Ptgis (MGP_CAROLIEiJ_G0024704) #11	B4galt5 (MGP_CAROLIEiJ_G0024705) #12	Slc9a8 (MGP_CAROLIEiJ_G0024706) #13	Spata2 (MGP_CAROLIEiJ_G0024707) #14	Rnf114 (MGP_CAROLIEiJ_G0024708) #15	Snai1 (MGP_CAROLIEiJ_G0024709) #16	MGP_CAROLIEiJ_G0024710 #17	Peds1 (MGP_CAROLIEiJ_G0024711) #18	Cebpb (MGP_CAROLIEiJ_G0024712) #19	Ptpn1 (MGP_CAROLIEiJ_G0024713) #20	Ripor3 (MGP_CAROLIEiJ_G0024714) #21	Pard6b (MGP_CAROLIEiJ_G0024715) #22	Adnp (MGP_CAROLIEiJ_G0024716) #23	MGP_CAROLIEiJ_G0024717 #24	MGP_CAROLIEiJ_G0024718 #24	Mocs3 (MGP_CAROLIEiJ_G0024719) #25	Kcng1 (MGP_CAROLIEiJ_G0024720) #26	Nfatc2 (MGP_CAROLIEiJ_G0024721) #27	Atp9a (MGP_CAROLIEiJ_G0024722) #28	Sall4 (MGP_CAROLIEiJ_G0024723) #29	Zfp64 (MGP_CAROLIEiJ_G0024724) #30	Tshz2 (MGP_CAROLIEiJ_G0024725) #31	Zfp217 (MGP_CAROLIEiJ_G0024726) #32	Bcas1 (MGP_CAROLIEiJ_G0024727) #33	Cyp24a1 (MGP_CAROLIEiJ_G0024728) #34	MGP_CAROLIEiJ_G0024729	MGP_CAROLIEiJ_G0024730
Shrew mouse	MODERN SPECIES	16	Ddx27 (MGP_PahariEiJ_G0026142) #8	Znfx1 (MGP_PahariEiJ_G0026143) #9	MGP_PahariEiJ_G0026144	Kcnb1 (MGP_PahariEiJ_G0026145) #10	Ptgis (MGP_PahariEiJ_G0026146) #11	B4galt5 (MGP_PahariEiJ_G0026147) #12	Slc9a8 (MGP_PahariEiJ_G0026148) #13	Spata2 (MGP_PahariEiJ_G0026149) #14	Rnf114 (MGP_PahariEiJ_G0026150) #15	Snai1 (MGP_PahariEiJ_G0026151) #16	MGP_PahariEiJ_G0026152 ##17	Peds1 (MGP_PahariEiJ_G0026153) #18	Cebpb (MGP_PahariEiJ_G0026154) #19	Ptpn1 (MGP_PahariEiJ_G0026155) #20	Ripor3 (MGP_PahariEiJ_G0026156) #21	Pard6b (MGP_PahariEiJ_G0026157) #22	MGP_PahariEiJ_G0026158 #23	Dpm1 (MGP_PahariEiJ_G0026159) #24	Mocs3 (MGP_PahariEiJ_G0026160) #25	Kcng1 (MGP_PahariEiJ_G0026161) #26	Nfatc2 (MGP_PahariEiJ_G0026162) #27	Atp9a (MGP_PahariEiJ_G0026163) #28	Sall4 (MGP_PahariEiJ_G0026164) #29	Zfp64 (MGP_PahariEiJ_G0026165) #30	Tshz2 (MGP_PahariEiJ_G0026166) #31	Zfp217 (MGP_PahariEiJ_G0026167) #32	Bcas1 (MGP_PahariEiJ_G0026168) #33	Cyp24a1 (MGP_PahariEiJ_G0026169) #34	Pfdn4 (MGP_PahariEiJ_G0026170)	MGP_PahariEiJ_G0026171	Dok5 (MGP_PahariEiJ_G0026172) #37
Rat	MODERN SPECIES	13	Ddx27 (ENSRNOG00000008081) #8	Znfx1 (ENSRNOG00000008194) #9	Kcnb1 (ENSRNOG00000046949) #10	AABR07054614.1 (ENSRNOG00000008245) #11	Rpl38-ps9 (ENSRNOG00000048701)	B4galt5 (ENSRNOG00000008283) #12	Slc9a8 (ENSRNOG00000008354) #13	Spata2 (ENSRNOG00000009207) #14	Rnf114 (ENSRNOG00000060821) #15	Snai1 (ENSRNOG00000009594) #16	LOC679539 (ENSRNOG00000025580) ##17	Peds1 (ENSRNOG00000060571) #18	Cebpb (ENSRNOG00000057347) #19	Ptpn1 (ENSRNOG00000010574) #20	Ripor3 (ENSRNOG00000010791) #21	Pard6b (ENSRNOG00000010883) #22	Adnp (ENSRNOG00000010975) #23	Dpm1 (ENSRNOG00000010993) #24	Mocs3 (ENSRNOG00000025067) #25	Kcng1 (ENSRNOG00000054314) #26	Nfatc2 (ENSRNOG00000012175) #27	Atp9a (ENSRNOG00000049484) #28	Sall4 (ENSRNOG00000050035) #29	Zfp93 (ENSRNOG00000012762) #30	ENSRNOG00000067568	Tshz2 (ENSRNOG00000048433) #31	ENSRNOG00000064332	Zfp217 (ENSRNOG00000021787) #32	Bcas1 (ENSRNOG00000012906) #33	ENSRNOG00000063885	ENSRNOG00000064257
Upper Galilee mountains blind mole rat	MODERN SPECIES	910								Spata2 (ENSNGAG00000018425) #14	Rnf114 (ENSNGAG00000017673) #15	Snai1 (ENSNGAG00000017185) #16	Ube2v1 (ENSNGAG00000015973) #17	ENSNGAG00000013302	Cebpb (ENSNGAG00000012015) #19	Ptpn1 (ENSNGAG00000010216) #20	Ripor3 (ENSNGAG00000013334) #21	Pard6b (ENSNGAG00000013685) #22	ENSNGAG00000011839 #23	ENSNGAG00000001117 #24	Mocs3 (ENSNGAG00000011771) #25	Kcng1 (ENSNGAG00000022351) #26	Nfatc2 (ENSNGAG00000010940) #27	ENSNGAG00000006990	Atp9a (ENSNGAG00000000818) #28	Sall4 (ENSNGAG00000017833) #29	Zfp64 (ENSNGAG00000018331) #30	ENSNGAG00000016474 #31	Zfp217 (ENSNGAG00000016391) #32	Bcas1 (ENSNGAG00000015655) #33	Cyp24a1 (ENSNGAG00000013537) #34	Pfdn4 (ENSNGAG00000001025)	Dok5 (ENSNGAG00000013135) #37
Lesser Egyptian jerboa	MODERN SPECIES	51	Adhfe1 (ENSJJAG00000010295)	ENSJJAG00000011507	Crh (ENSJJAG00000011598)	Trim55 (ENSJJAG00000013977)	Dnajc5b (ENSJJAG00000022487)	Pde7a (ENSJJAG00000023569)	Mtfr1 (ENSJJAG00000000405)	ENSJJAG00000021828	Cyp7b1 (ENSJJAG00000019809)	Bhlhe22 (ENSJJAG00000012012)	ENSJJAG00000000742	Ythdf3 (ENSJJAG00000017742)	Ttpa (ENSJJAG00000016673)	Ggh (ENSJJAG00000019965)	Nkain3 (ENSJJAG00000019686)	ENSJJAG00000006659 #22	ENSJJAG00000022655	Clvs1 (ENSJJAG00000014044)	Chd7 (ENSJJAG00000022064)	Rab2a (ENSJJAG00000000676)	Car8 (ENSJJAG00000000356)	Tox (ENSJJAG00000023957)	Nsmaf (ENSJJAG00000018732)	Sdcbp (ENSJJAG00000008505)	Cyp7a1 (ENSJJAG00000009993)	Ubxn2b (ENSJJAG00000017241)	Fam110b (ENSJJAG00000011482)	Bpnt2 (ENSJJAG00000016357)	Penk (ENSJJAG00000012141)	Sdr16c6 (ENSJJAG00000005653)	Sdr16c5 (ENSJJAG00000012889)
Kangaroo rat	MODERN SPECIES	394	Cse1l (ENSDORG00000013960)	Stau1 (ENSDORG00000030220) #7	Ddx27 (ENSDORG00000014137) #8	Znfx1 (ENSDORG00000014142) #9	Kcnb1 (ENSDORG00000026603) #10	Ptgis (ENSDORG00000013245) #11	B4galt5 (ENSDORG00000001984) #12	Slc9a8 (ENSDORG00000002709) #13	Spata2 (ENSDORG00000026324) #14	Rnf114 (ENSDORG00000014937) #15	Snai1 (ENSDORG00000025372) #16	ENSDORG00000027579	ENSDORG00000004219	Ptpn1 (ENSDORG00000013016) #20	Ripor3 (ENSDORG00000026878) #21	Pard6b (ENSDORG00000007031) #22	Adnp (ENSDORG00000024209) #23	Dpm1 (ENSDORG00000010186) #24	Mocs3 (ENSDORG00000029643) #25	Kcng1 (ENSDORG00000008510) #26	Nfatc2 (ENSDORG00000028181) #27	Atp9a (ENSDORG00000008732) #28	Sall4 (ENSDORG00000012841) #29	Zfp64 (ENSDORG00000024389) #30	ENSDORG00000028111 #31	ENSDORG00000027670	Zfp217 (ENSDORG00000023982) #32	Bcas1 (ENSDORG00000002327) #33	Cyp24a1 (ENSDORG00000016127) #34	ENSDORG00000006644 #35	Dok5 (ENSDORG00000007241) #37
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000163703.a	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00910000146955	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000157304.i.a #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00910000146955	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Naked mole-rat female	MODERN SPECIES	6	ZNFX1 (ENSHGLG00000008068) #9	ENSHGLG00000049086	KCNB1 (ENSHGLG00000038195) #10	PTGIS (ENSHGLG00000007083) #11	B4GALT5 (ENSHGLG00000006719) #12	SLC9A8 (ENSHGLG00000006337) #13	SPATA2 (ENSHGLG00000000487) #14	RNF114 (ENSHGLG00000005669) #15	SNAI1 (ENSHGLG00000005310) #16	ENSHGLG00000049806	PEDS1 (ENSHGLG00000005163) #18	ENSHGLG00000042761 #19	PTPN1 (ENSHGLG00000005082) #20	ENSHGLG00000012434	RIPOR3 (ENSHGLG00000012260) #21	PARD6B (ENSHGLG00000012058) #22	ENSHGLG00000034848	ADNP (ENSHGLG00000011922) #23	ENSHGLG00000011694 #24	MOCS3 (ENSHGLG00000020809) #25	KCNG1 (ENSHGLG00000011040) #26	NFATC2 (ENSHGLG00000010406) #27	ENSHGLG00000044936	ATP9A (ENSHGLG00000009412) #28	SALL4 (ENSHGLG00000009043) #29	ENSHGLG00000044690	ENSHGLG00000008937	ENSHGLG00000033028 #30	ENSHGLG00000049099 #31	ENSHGLG00000050175	ENSHGLG00000048236
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000157304.j #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696.ac.a
Guinea pig	MODERN SPECIES	96														PTPN1 (ENSCPOG00000033436) #20	RIPOR3 (ENSCPOG00000010650) #21	PARD6B (ENSCPOG00000021603) #22	ADNP (ENSCPOG00000001591) #23	DPM1 (ENSCPOG00000033471) #24	MOCS3 (ENSCPOG00000026680) #25	KCNG1 (ENSCPOG00000015203) #26	NFATC2 (ENSCPOG00000012743) #27	ATP9A (ENSCPOG00000012747) #28	ENSCPOG00000038489 #29	ENSCPOG00000036300 #29	ZFP64 (ENSCPOG00000025271) #30	TSHZ2 (ENSCPOG00000002986) #31	ENSCPOG00000038107	ZNF217 (ENSCPOG00000027399) #32	BCAS1 (ENSCPOG00000009194) #33	CYP24A1 (ENSCPOG00000010077) #34	ENSCPOG00000032848
Hystricomorpha_b	ANCESTRAL SPECIES	16	ENSGT00940000157304.j #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000162354 #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696.ac.a.b
Degu	MODERN SPECIES	118	STAU1 (ENSODEG00000006523) #7	DDX27 (ENSODEG00000006281) #8	ZNFX1 (ENSODEG00000006490) #9	KCNB1 (ENSODEG00000007239) #10	PTGIS (ENSODEG00000006946) #11	ENSODEG00000006524 #12	SLC9A8 (ENSODEG00000007225) #13	SPATA2 (ENSODEG00000006882) #14	RNF114 (ENSODEG00000006139) #15	SNAI1 (ENSODEG00000007856) #16	ENSODEG00000006622	PEDS1 (ENSODEG00000006093) #18	CEBPB (ENSODEG00000007763) #19	PTPN1 (ENSODEG00000009073) #20	RIPOR3 (ENSODEG00000005970) #21	PARD6B (ENSODEG00000005877) #22	ADNP (ENSODEG00000007210) #23	ENSODEG00000006312 #24	MOCS3 (ENSODEG00000019332) #25	KCNG1 (ENSODEG00000005905) #26	ENSODEG00000007977	NFATC2 (ENSODEG00000006560) #27	ATP9A (ENSODEG00000006908) #28	ENSODEG00000006762 #29	ENSODEG00000006564	ZFP64 (ENSODEG00000005735) #30	ENSODEG00000019550 #31	ENSODEG00000019595	ZNF217 (ENSODEG00000006753) #32	ENSODEG00000006282	CYP24A1 (ENSODEG00000005827) #34
Long-tailed chinchilla	MODERN SPECIES	152	ENSCLAG00000006516 #7	DDX27 (ENSCLAG00000008075) #8	ZNFX1 (ENSCLAG00000006567) #9	KCNB1 (ENSCLAG00000005669) #10	PTGIS (ENSCLAG00000005501) #11	B4GALT5 (ENSCLAG00000006323) #12	SLC9A8 (ENSCLAG00000004548) #13	SPATA2 (ENSCLAG00000017362) #14	RNF114 (ENSCLAG00000012925) #15	SNAI1 (ENSCLAG00000012285) #16	ENSCLAG00000006741	PEDS1 (ENSCLAG00000005635) #18	ENSCLAG00000006078	PTPN1 (ENSCLAG00000005789) #20	RIPOR3 (ENSCLAG00000004580) #21	PARD6B (ENSCLAG00000009267) #22	BCAS4 (ENSCLAG00000009069)	ENSCLAG00000013494	ADNP (ENSCLAG00000012575) #23	ENSCLAG00000016153 #24	MOCS3 (ENSCLAG00000017807) #25	KCNG1 (ENSCLAG00000006678) #26	NFATC2 (ENSCLAG00000006467) #27	ATP9A (ENSCLAG00000010633) #28	SALL4 (ENSCLAG00000010479) #29	ZFP64 (ENSCLAG00000008329) #30	TSHZ2 (ENSCLAG00000009630) #31	ENSCLAG00000017696	ENSCLAG00000006928 #32	BCAS1 (ENSCLAG00000006299) #33	CYP24A1 (ENSCLAG00000006942) #34
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000163703.a	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B.k #24	ENSGT00940000153481.B.l #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	3	ENSSVLG00005020751	ENSSVLG00005020782	ENSSVLG00005020823	ENSSVLG00005020855	ENSSVLG00005020890	ENSSVLG00005020924	ENSSVLG00005020973	ENSSVLG00005020985	ENSSVLG00005021014	ENSSVLG00005021055	ENSSVLG00005021066	ENSSVLG00005021091	ENSSVLG00005021128	ENSSVLG00005021177	ENSSVLG00005021226	ENSSVLG00005021275 #22	ENSSVLG00005021299	ENSSVLG00005021338	ENSSVLG00005021359	FZD8 (ENSSVLG00005021417)	GJD4 (ENSSVLG00005021504)	CCNY (ENSSVLG00005021552)	ENSSVLG00005021670	ENSSVLG00005021688	CREM (ENSSVLG00005021874)	CUL2 (ENSSVLG00005022796)	PARD3 (ENSSVLG00005022949)	ENSSVLG00005023205	ENSSVLG00005023228	NRP1 (ENSSVLG00005023267)	ITGB1 (ENSSVLG00005023311)
Eurasian red squirrel	MODERN SPECIES	11	STAU1 (ENSSVLG00005004230) #7	DDX27 (ENSSVLG00005004272) #8	ZNFX1 (ENSSVLG00005004315) #9	KCNB1 (ENSSVLG00005004367) #10	PTGIS (ENSSVLG00005004394) #11	B4GALT5 (ENSSVLG00005004427) #12	SLC9A8 (ENSSVLG00005004467) #13	SPATA2 (ENSSVLG00005004527) #14	RNF114 (ENSSVLG00005004552) #15	SNAI1 (ENSSVLG00005004568) #16	UBE2V1 (ENSSVLG00005004590) #17	ENSSVLG00005004618	CEBPB (ENSSVLG00005004641) #19	PTPN1 (ENSSVLG00005000174) #20	RIPOR3 (ENSSVLG00005000232) #21	ENSSVLG00005000290 #22	ENSSVLG00005000318	BCAS4 (ENSSVLG00005000345)	ADNP (ENSSVLG00005000370) #23	DPM1 (ENSSVLG00005000398) #24	MOCS3 (ENSSVLG00005000434) #25	KCNG1 (ENSSVLG00005000448) #26	NFATC2 (ENSSVLG00005000511) #27	ATP9A (ENSSVLG00005000658) #28	SALL4 (ENSSVLG00005000729) #29	ENSSVLG00005000761	ZFP64 (ENSSVLG00005000833) #30	TSHZ2 (ENSSVLG00005000893) #31	ENSSVLG00005000915	ENSSVLG00005000930	ZNF217 (ENSSVLG00005000945) #32
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000163703.a	ENSGT00940000162137 #19	ENSGT00940000158041.e #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B.l #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696
Alpin marmot	MODERN SPECIES		STAU1 (ENSMMMG00000007273) #7	ENSMMMG00000007315	DDX27 (ENSMMMG00000007319) #8	ZNFX1 (ENSMMMG00000007354) #9	KCNB1 (ENSMMMG00000007399) #10	PTGIS (ENSMMMG00000007402) #11	B4GALT5 (ENSMMMG00000007414) #12	SLC9A8 (ENSMMMG00000007474) #13	SPATA2 (ENSMMMG00000007555) #14	ENSMMMG00000007564	RNF114 (ENSMMMG00000007568) #15	SNAI1 (ENSMMMG00000007619) #16	UBE2V1 (ENSMMMG00000007630) #17	ENSMMMG00000007699 #20	RIPOR3 (ENSMMMG00000007709) #21	PARD6B (ENSMMMG00000007746) #22	ADNP (ENSMMMG00000007757) #23	ENSMMMG00000007768 #24	MOCS3 (ENSMMMG00000007809) #25	KCNG1 (ENSMMMG00000007813) #26	ENSMMMG00000007852 #27	ATP9A (ENSMMMG00000007891) #28	SALL4 (ENSMMMG00000008074) #29	ZFP64 (ENSMMMG00000008125) #30	TSHZ2 (ENSMMMG00000008206) #31	ENSMMMG00000008228	ZNF217 (ENSMMMG00000008233) #32	BCAS1 (ENSMMMG00000008267) #33	CYP24A1 (ENSMMMG00000008409) #34	PFDN4 (ENSMMMG00000008431)	DOK5 (ENSMMMG00000008468) #37
Marmotini_b	ANCESTRAL SPECIES	25	ENSGT00940000157304 #7	ENSGT00550000074997 #8	ENSGT00940000155154.b #9	ENSGT00940000154899 #10	ENSGT00940000153709.A #11	ENSGT00940000158019 #12	ENSGT00940000157210 #13	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a	ENSGT00940000163703.a	ENSGT00940000162137 #19	ENSGT00940000158041.e #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B.l #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28	ENSGT00940000155384.a #29	ENSGT00940000156405 #30	ENSGT00950000183051.a.b #31	ENSGT00560000078660	ENSGT00940000159884 #32	ENSGT00390000003167 #33	ENSGT00950000182905.b #34	ENSGT00390000006696
Squirrel	MODERN SPECIES	114	CSE1L (ENSSTOG00000003600)	STAU1 (ENSSTOG00000003634) #7	DDX27 (ENSSTOG00000003645) #8	ZNFX1 (ENSSTOG00000028176) #9	KCNB1 (ENSSTOG00000026242) #10	PTGIS (ENSSTOG00000019624) #11	B4GALT5 (ENSSTOG00000003851) #12	SLC9A8 (ENSSTOG00000027124) #13	SPATA2 (ENSSTOG00000025224) #14	RNF114 (ENSSTOG00000005727) #15	SNAI1 (ENSSTOG00000005866) #16	ENSSTOG00000014322	PEDS1 (ENSSTOG00000016416) #18	ENSSTOG00000025542 #20	RIPOR3 (ENSSTOG00000023513) #21	PARD6B (ENSSTOG00000009330) #22	ADNP (ENSSTOG00000023722) #23	ENSSTOG00000014659 #24	MOCS3 (ENSSTOG00000026585) #25	KCNG1 (ENSSTOG00000000015) #26	NFATC2 (ENSSTOG00000013460) #27	ATP9A (ENSSTOG00000024149) #28	SALL4 (ENSSTOG00000025002) #29	ZFP64 (ENSSTOG00000019989) #30	TSHZ2 (ENSSTOG00000008373) #31	ZNF217 (ENSSTOG00000013807) #32	BCAS1 (ENSSTOG00000028914) #33	CYP24A1 (ENSSTOG00000001968) #34	PFDN4 (ENSSTOG00000028253)	DOK5 (ENSSTOG00000028767) #37
Arctic ground squirrel	MODERN SPECIES	83	STAU1 (ENSUPAG00010022006) #7	DDX27 (ENSUPAG00010022011) #8	ZNFX1 (ENSUPAG00010022013) #9	KCNB1 (ENSUPAG00010000021) #10	PTGIS (ENSUPAG00010000049) #11	B4GALT5 (ENSUPAG00010000085) #12	SLC9A8 (ENSUPAG00010000132) #13	SPATA2 (ENSUPAG00010000256) #14	RNF114 (ENSUPAG00010000271) #15	SNAI1 (ENSUPAG00010000283) #16	ENSUPAG00010000293	ENSUPAG00010000318	CEBPB (ENSUPAG00010000335) #19	ENSUPAG00010000358 #20	RIPOR3 (ENSUPAG00010000410) #21	PARD6B (ENSUPAG00010000463) #22	ENSUPAG00010000474	ADNP (ENSUPAG00010000496) #23	ENSUPAG00010000511 #24	MOCS3 (ENSUPAG00010000719) #25	KCNG1 (ENSUPAG00010000726) #26	NFATC2 (ENSUPAG00010000747) #27	ATP9A (ENSUPAG00010000794) #28	SALL4 (ENSUPAG00010000889) #29	ZFP64 (ENSUPAG00010000898) #30	TSHZ2 (ENSUPAG00010000932) #31	ENSUPAG00010000940	ZNF217 (ENSUPAG00010000948) #32	BCAS1 (ENSUPAG00010000967) #33	CYP24A1 (ENSUPAG00010001072) #34	ENSUPAG00010001098
Lagomorpha	ANCESTRAL SPECIES	249														ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a	ENSGT00530000063631.b #23	ENSGT00940000153481.B #24	ENSGT00940000160847 #25	ENSGT00940000159686 #26	ENSGT00940000156230 #27	ENSGT00940000159181 #28
Rabbit	MODERN SPECIES	555														PTPN1 (ENSOCUG00000008605) #20	RIPOR3 (ENSOCUG00000016769) #21	PARD6B (ENSOCUG00000015993) #22	BCAS4 (ENSOCUG00000014694)	ADNP (ENSOCUG00000014704) #23	DPM1 (ENSOCUG00000014708) #24	MOCS3 (ENSOCUG00000014721) #25	ENSOCUG00000011013 #26	NFATC2 (ENSOCUG00000012556) #27	ATP9A (ENSOCUG00000021416) #28
Pika	MODERN SPECIES	4317														PTPN1 (ENSOPRG00000001024) #20	RIPOR3 (ENSOPRG00000001048) #21	ENSOPRG00000001071 #22
Tree shrew	MODERN SPECIES	4354															ENSTBEG00000001382 #21	PARD6B (ENSTBEG00000002270) #22	BCAS4 (ENSTBEG00000002498)	ADNP (ENSTBEG00000002890) #23	DPM1 (ENSTBEG00000003795) #24