Percora_a	ANCESTRAL SPECIES	10	ENSGT00940000157304	ENSGT00550000074997	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000163703.a #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000162354	ENSGT00940000158854	ENSGT00940000163703.a #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
Caprinae	ANCESTRAL SPECIES	21	ENSGT00940000157304	ENSGT00550000074997	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000163703.a #18	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
Goat	MODERN SPECIES	4	ZNFX1 (ENSCHIG00000018393) #7	KCNB1 (ENSCHIG00000025849) #8	PTGIS (ENSCHIG00000011304) #9	ENSCHIG00000023099 #10	B4GALT5 (ENSCHIG00000017253) #11	SLC9A8 (ENSCHIG00000019556) #12	ENSCHIG00000016542 #13	SPATA2 (ENSCHIG00000017318) #14	RNF114 (ENSCHIG00000011500) #15	SNAI1 (ENSCHIG00000014308) #16	ENSCHIG00000026963 #17	ENSCHIG00000025237 #18	CEBPB (ENSCHIG00000026165) #19	PTPN1 (ENSCHIG00000018438) #20	RIPOR3 (ENSCHIG00000021955) #21	PARD6B (ENSCHIG00000024844) #22	BCAS4 (ENSCHIG00000019980) #23	ADNP (ENSCHIG00000026866) #24	DPM1 (ENSCHIG00000024448) #25	MOCS3 (ENSCHIG00000002985) #26	KCNG1 (ENSCHIG00000023574) #27	NFATC2 (ENSCHIG00000013486) #28	ATP9A (ENSCHIG00000017687) #29	SALL4 (ENSCHIG00000026270) #30	ZFP64 (ENSCHIG00000013734) #31	TSHZ2 (ENSCHIG00000012906) #32	ENSCHIG00000002437 #33	ZNF217 (ENSCHIG00000015816) #34	BCAS1 (ENSCHIG00000014229) #35	CYP24A1 (ENSCHIG00000009239) #36	ENSCHIG00000019520 #37
Rambouillet Sheep	MODERN SPECIES	4	CSE1L (ENSOARG00020023584)	STAU1 (ENSOARG00020023667)	DDX27 (ENSOARG00020023789)	ZNFX1 (ENSOARG00020023841) #7	KCNB1 (ENSOARG00020010013) #8	PTGIS (ENSOARG00020010083) #9	B4GALT5 (ENSOARG00020010276) #11	SLC9A8 (ENSOARG00020010491) #12	SPATA2 (ENSOARG00020010771) #14	RNF114 (ENSOARG00020010828) #15	SNAI1 (ENSOARG00020010897) #16	UBE2V1 (ENSOARG00020010955)	ENSOARG00020011139 #18	CEBPB (ENSOARG00020011295) #19	PTPN1 (ENSOARG00020011319) #20	PARD6B (ENSOARG00020011957) #22	BCAS4 (ENSOARG00020011987) #23	ADNP (ENSOARG00020012056) #24	DPM1 (ENSOARG00020012189) #25	MOCS3 (ENSOARG00020012279) #26	KCNG1 (ENSOARG00020012313) #27	NFATC2 (ENSOARG00020012410) #28	ATP9A (ENSOARG00020013019) #29	SALL4 (ENSOARG00020013545) #30	ZFP64 (ENSOARG00020013675) #31	TSHZ2 (ENSOARG00020013957) #32	ENSOARG00020013991 #33	CYP24A1 (ENSOARG00020014269) #36	ENSOARG00020014624 #37	DOK5 (ENSOARG00020014697)	CBLN4 (ENSOARG00020014929)
Bovinae	ANCESTRAL SPECIES	23	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT01010000224211.B	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000162354	ENSGT00960000190565	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
American bison	DUPLICATION
American bison	MODERN SPECIES	2976	DDX27 (ENSBBBG00000011032)	ZNFX1 (ENSBBBG00000001981) #7	KCNB1 (ENSBBBG00000010994) #8	PTGIS (ENSBBBG00000010988) #9	RUM1 (ENSBBBG00000010979)	B4GALT5 (ENSBBBG00000010976) #11	SLC9A8 (ENSBBBG00000008144) #12	SPATA2 (ENSBBBG00000010928) #14	RNF114 (ENSBBBG00000010917) #15	SNAI1 (ENSBBBG00000010850) #16	ENSBBBG00000010845 #17	PEDS1 (ENSBBBG00000008727)	ENSBBBG00000010817	PTPN1 (ENSBBBG00000010813) #20	RIPOR3 (ENSBBBG00000010794) #21	ENSBBBG00000010784 #22	ENSBBBG00000001888 #23	ADNP (ENSBBBG00000010772) #24	DPM1 (ENSBBBG00000010763) #25	MOCS3 (ENSBBBG00000001882) #26	KCNG1 (ENSBBBG00000007300) #27	NFATC2 (ENSBBBG00000010742) #28
American bison	MODERN SPECIES	3252	ENSBBBG00000017210	ENSBBBG00000017110	SNRPE (ENSBBBG00000017104)	ENSBBBG00000017089	SOX13 (ENSBBBG00000017084)	ENSBBBG00000017052	ENSBBBG00000017041	REN (ENSBBBG00000017030)	ENSBBBG00000017012	GOLT1A (ENSBBBG00000016995)	PLEKHA6 (ENSBBBG00000004202)	PPP1R15B (ENSBBBG00000007662)	PIK3C2B (ENSBBBG00000006769)	ENSBBBG00000016701	LRRN2 (ENSBBBG00000008377)	ENSBBBG00000016546 #22	NFASC (ENSBBBG00000016499)	CNTN2 (ENSBBBG00000003994)	TMEM81 (ENSBBBG00000016030)	RBBP5 (ENSBBBG00000016023)	DSTYK (ENSBBBG00000015985)	TMCC2 (ENSBBBG00000003970)	NUAK2 (ENSBBBG00000015919)	KLHDC8A (ENSBBBG00000015896)	LEMD1 (ENSBBBG00000015870)	CDK18 (ENSBBBG00000015848)	MFSD4A (ENSBBBG00000015805)	ELK4 (ENSBBBG00000000783)	SLC45A3 (ENSBBBG00000003926)	NUCKS1 (ENSBBBG00000015727)	RAB29 (ENSBBBG00000015710)
Bos	ANCESTRAL SPECIES	24	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT01010000224211.B	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000162354	ENSGT00960000190565	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
Bos_a	ANCESTRAL SPECIES	7	ENSGT00940000157304	ENSGT00550000074997	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00740000115534.a.a #17	ENSGT00940000162354	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00560000078660 #33	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37
Wild yak	MODERN SPECIES	1112		DDX27 (ENSBMUG00000011955)	ZNFX1 (ENSBMUG00000011933) #7	KCNB1 (ENSBMUG00000011862) #8	PTGIS (ENSBMUG00000011831) #9	B4GALT5 (ENSBMUG00000011807) #11	ENSBMUG00000011746 #12	ENSBMUG00000011733 #14	RNF114 (ENSBMUG00000011709) #15	SNAI1 (ENSBMUG00000011700) #16	ENSBMUG00000011684 #17	PEDS1 (ENSBMUG00000011633)	ENSBMUG00000011615	PTPN1 (ENSBMUG00000011606) #20	RIPOR3 (ENSBMUG00000011578) #21	PARD6B (ENSBMUG00000011544) #22	BCAS4 (ENSBMUG00000011522) #23	ADNP (ENSBMUG00000011507) #24	DPM1 (ENSBMUG00000011486) #25	MOCS3 (ENSBMUG00000011469) #26	KCNG1 (ENSBMUG00000011454) #27	NFATC2 (ENSBMUG00000011413) #28	ATP9A (ENSBMUG00000009140) #29	ENSBMUG00000008019 #30	ENSBMUG00000008004 #31	ZFP64 (ENSBMUG00000007990) #31
Bos_b	ANCESTRAL SPECIES	26	ENSGT00940000155154.b #7	ENSGT00940000154899 #8	ENSGT00940000153709.A #9	ENSGT01010000224211.B	ENSGT00940000158019 #11	ENSGT00940000157210 #12	ENSGT00530000063956.a #14	ENSGT00950000182909.b.b.a #15	ENSGT00940000154681.a #16	ENSGT00940000158854	ENSGT00940000162354	ENSGT00960000190565	ENSGT00940000162137 #19	ENSGT00940000158041 #20	ENSGT00940000153717.a.b #21	ENSGT00950000183211.a.a.a #22	ENSGT00390000006790.a #23	ENSGT00530000063631.b #24	ENSGT00940000153481.B #25	ENSGT00940000160847 #26	ENSGT00940000159686 #27	ENSGT00940000156230 #28	ENSGT00940000159181 #29	ENSGT00940000155384.a #30	ENSGT00940000156405 #31	ENSGT00950000183051.a.b #32	ENSGT00940000159884 #34	ENSGT00390000003167 #35	ENSGT00950000182905.b #36	ENSGT00390000006696 #37	ENSGT00940000160725
Cow	MODERN SPECIES	4	ZNFX1 (ENSBTAG00000020166) #7	KCNB1 (ENSBTAG00000027320) #8	PTGIS (ENSBTAG00000017537) #9	RUM1 (ENSBTAG00000053443)	B4GALT5 (ENSBTAG00000012626) #11	SLC9A8 (ENSBTAG00000008969) #12	SPATA2 (ENSBTAG00000018063) #14	RNF114 (ENSBTAG00000027317) #15	SNAI1 (ENSBTAG00000014554) #16	UBE2V1 (ENSBTAG00000027316)	PEDS1 (ENSBTAG00000010135)	ENSBTAG00000049867	CEBPB (ENSBTAG00000051972) #19	PTPN1 (ENSBTAG00000006616) #20	RIPOR3 (ENSBTAG00000012297) #21	PARD6B (ENSBTAG00000021601) #22	BCAS4 (ENSBTAG00000038929) #23	ADNP (ENSBTAG00000000340) #24	DPM1 (ENSBTAG00000007721) #25	MOCS3 (ENSBTAG00000049509) #26	KCNG1 (ENSBTAG00000003398) #27	NFATC2 (ENSBTAG00000018270) #28	ATP9A (ENSBTAG00000007962) #29	SALL4 (ENSBTAG00000003101) #30	ENSBTAG00000053699 #31	ZFP64 (ENSBTAG00000001512) #31	TSHZ2 (ENSBTAG00000007917) #32	ZNF217 (ENSBTAG00000030556) #34	BCAS1 (ENSBTAG00000000835) #35	CYP24A1 (ENSBTAG00000002765) #36	PFDN4 (ENSBTAG00000008812) #37
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	4	ZNFX1 (ENSBIXG00005019475) #7	KCNB1 (ENSBIXG00005019551) #8	PTGIS (ENSBIXG00005019610) #9	ENSBIXG00005019642	ENSBIXG00005019648	B4GALT5 (ENSBIXG00005019674) #11	SLC9A8 (ENSBIXG00005019931) #12	SPATA2 (ENSBIXG00005019973) #14	RNF114 (ENSBIXG00005019999) #15	SNAI1 (ENSBIXG00005020012) #16	UBE2V1 (ENSBIXG00005003288)	PEDS1 (ENSBIXG00005020099)	CEBPB (ENSBIXG00005003302) #19	PTPN1 (ENSBIXG00005020158) #20	RIPOR3 (ENSBIXG00005003360) #21	ENSBIXG00005003390 #22	ENSBIXG00005020294 #23	ADNP (ENSBIXG00005020336) #24	ENSBIXG00005020382 #25	KCNG1 (ENSBIXG00005003446) #27	NFATC2 (ENSBIXG00005020482) #28	ATP9A (ENSBIXG00005020806) #29	SALL4 (ENSBIXG00005020915) #30	ENSBIXG00005020944	ZFP64 (ENSBIXG00005021039) #31	ENSBIXG00005021084	TSHZ2 (ENSBIXG00005021102) #32	ZNF217 (ENSBIXG00005021153) #34	BCAS1 (ENSBIXG00005021258) #35	CYP24A1 (ENSBIXG00005021353) #36	ENSBIXG00005021386
Hybrid Bos Indicus	MODERN SPECIES	7	ENSBIXG00005013493	ENSBIXG00005013483	ENSBIXG00005007531	SNRPE (ENSBIXG00005013431)	SOX13 (ENSBIXG00005013395)	ETNK2 (ENSBIXG00005001579)	REN (ENSBIXG00005013325)	ENSBIXG00005001568	GOLT1A (ENSBIXG00005013281)	PLEKHA6 (ENSBIXG00005013197)	PPP1R15B (ENSBIXG00005012957)	PIK3C2B (ENSBIXG00005012930)	ENSBIXG00005000283	ENSBIXG00005012584	LRRN2 (ENSBIXG00005012570)	ENSBIXG00005012536 #22	NFASC (ENSBIXG00005001357)	CNTN2 (ENSBIXG00005012349)	RBBP5 (ENSBIXG00005000379)	TMEM81 (ENSBIXG00005012289)	DSTYK (ENSBIXG00005001284)	TMCC2 (ENSBIXG00005012217)	NUAK2 (ENSBIXG00005012148)	KLHDC8A (ENSBIXG00005012119)	LEMD1 (ENSBIXG00005012033)	CDK18 (ENSBIXG00005011999)	MFSD4A (ENSBIXG00005000433)	ELK4 (ENSBIXG00005001160)	SLC45A3 (ENSBIXG00005011725)	ENSBIXG00005011686	SLC41A1 (ENSBIXG00005011597)
Siberian musk deer	MODERN SPECIES	156	ENSMMSG00000000842	PTGIS (ENSMMSG00000000818) #9	ENSMMSG00000000799	B4GALT5 (ENSMMSG00000000771) #11	SLC9A8 (ENSMMSG00000000731) #12	SPATA2 (ENSMMSG00000000719) #14	RNF114 (ENSMMSG00000000644) #15	SNAI1 (ENSMMSG00000000625) #16	ENSMMSG00000000577 #17	ENSMMSG00000000519 #18	ENSMMSG00000000499	CEBPB (ENSMMSG00000000488) #19	ENSMMSG00000000476	PTPN1 (ENSMMSG00000000433) #20	RIPOR3 (ENSMMSG00000000362) #21	PARD6B (ENSMMSG00000000327) #22	BCAS4 (ENSMMSG00000000296) #23	ADNP (ENSMMSG00000000269) #24	DPM1 (ENSMMSG00000000236) #25	ENSMMSG00000000184 #26	KCNG1 (ENSMMSG00000015644) #27	NFATC2 (ENSMMSG00000015490) #28	ATP9A (ENSMMSG00000015245) #29	SALL4 (ENSMMSG00000015115) #30	ZFP64 (ENSMMSG00000014981) #31	ENSMMSG00000014970	TSHZ2 (ENSMMSG00000014943) #32	ENSMMSG00000014933 #33	ZNF217 (ENSMMSG00000014894) #34	ENSMMSG00000014879	BCAS1 (ENSMMSG00000014841) #35